Query 003451
Match_columns 819
No_of_seqs 787 out of 4091
Neff 11.3
Searched_HMMs 29240
Date Tue Mar 26 01:39:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003451.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003451hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.3E-39 4.3E-44 366.8 42.5 513 183-803 63-584 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.2E-39 4E-44 367.0 41.9 474 277-816 82-562 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-26 9.1E-31 242.6 49.2 333 425-802 39-372 (388)
4 4g26_A Pentatricopeptide repea 100.0 2.6E-29 8.9E-34 268.6 26.0 207 190-396 7-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.2E-26 7.4E-31 243.3 46.9 342 463-815 8-350 (388)
6 4g26_A Pentatricopeptide repea 100.0 4.8E-29 1.7E-33 266.5 26.1 205 226-431 8-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 2.2E-24 7.6E-29 237.6 38.1 455 315-806 7-486 (514)
8 2gw1_A Mitochondrial precursor 99.9 9.7E-23 3.3E-27 224.5 40.8 459 278-774 5-488 (514)
9 3fp2_A TPR repeat-containing p 99.9 3.1E-22 1.1E-26 221.7 40.3 444 314-805 25-498 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 1.6E-21 5.6E-26 210.6 39.9 351 418-802 25-414 (450)
11 3fp2_A TPR repeat-containing p 99.9 4.5E-21 1.5E-25 212.4 40.1 439 278-763 24-491 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 3.7E-21 1.3E-25 207.8 37.9 333 438-805 11-365 (450)
13 1xi4_A Clathrin heavy chain; a 99.9 4.3E-17 1.5E-21 183.5 64.3 306 457-812 988-1322(1630)
14 1xi4_A Clathrin heavy chain; a 99.9 3.1E-16 1E-20 176.7 66.4 565 134-790 986-1584(1630)
15 2xm6_A Protein corresponding t 99.9 1.1E-17 3.9E-22 181.8 52.0 377 397-805 56-474 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 5.5E-19 1.9E-23 184.3 39.7 320 453-805 2-342 (359)
17 2xm6_A Protein corresponding t 99.9 3.4E-17 1.2E-21 178.1 52.5 366 403-801 26-435 (490)
18 3ieg_A DNAJ homolog subfamily 99.9 4.6E-18 1.6E-22 177.3 40.7 332 418-781 2-352 (359)
19 3hym_B Cell division cycle pro 99.8 3.9E-18 1.3E-22 175.5 29.6 270 528-804 26-305 (330)
20 2ooe_A Cleavage stimulation fa 99.8 3.4E-16 1.2E-20 172.0 46.4 433 337-801 2-495 (530)
21 3hym_B Cell division cycle pro 99.8 9.5E-18 3.2E-22 172.6 31.6 292 487-786 20-322 (330)
22 2ooe_A Cleavage stimulation fa 99.8 8.2E-16 2.8E-20 169.0 46.4 218 542-763 256-492 (530)
23 1fch_A Peroxisomal targeting s 99.8 7.7E-18 2.6E-22 176.2 25.2 262 527-797 67-358 (368)
24 4g1t_A Interferon-induced prot 99.8 2.5E-16 8.7E-21 170.9 34.3 388 384-805 51-466 (472)
25 4eqf_A PEX5-related protein; a 99.8 1.5E-17 5.3E-22 173.6 20.7 262 527-796 68-354 (365)
26 1fch_A Peroxisomal targeting s 99.8 5.7E-17 2E-21 169.6 23.9 309 428-762 34-358 (368)
27 1b89_A Protein (clathrin heavy 99.8 2E-16 6.7E-21 160.2 25.6 239 220-501 15-253 (449)
28 3mkr_A Coatomer subunit epsilo 99.8 3.6E-16 1.2E-20 156.0 27.5 255 534-805 9-271 (291)
29 4eqf_A PEX5-related protein; a 99.7 5.9E-17 2E-21 169.2 21.3 267 490-760 66-353 (365)
30 3cv0_A Peroxisome targeting si 99.7 3.1E-16 1.1E-20 160.9 25.8 283 490-800 22-317 (327)
31 1b89_A Protein (clathrin heavy 99.7 8.1E-16 2.8E-20 155.7 27.2 281 326-650 15-303 (449)
32 3mkr_A Coatomer subunit epsilo 99.7 1.3E-15 4.4E-20 151.9 27.7 277 497-792 7-288 (291)
33 4g1t_A Interferon-induced prot 99.7 4.4E-15 1.5E-19 161.1 33.8 381 351-764 53-460 (472)
34 3spa_A Mtrpol, DNA-directed RN 99.7 9.3E-18 3.2E-22 183.1 10.7 117 279-395 127-247 (1134)
35 3cv0_A Peroxisome targeting si 99.7 1.5E-15 5.1E-20 155.8 26.5 282 453-762 20-314 (327)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.9E-17 6.5E-22 180.7 10.6 153 311-468 124-286 (1134)
37 2pl2_A Hypothetical conserved 99.7 1E-14 3.6E-19 138.7 22.3 198 592-796 3-212 (217)
38 1ouv_A Conserved hypothetical 99.7 1.4E-13 4.9E-18 136.7 31.4 231 558-806 5-259 (273)
39 3uq3_A Heat shock protein STI1 99.6 1.9E-14 6.6E-19 141.7 24.0 222 563-799 9-237 (258)
40 3e4b_A ALGK; tetratricopeptide 99.6 1.5E-14 5.2E-19 154.3 23.6 346 355-764 9-388 (452)
41 3e4b_A ALGK; tetratricopeptide 99.6 3.9E-14 1.3E-18 151.2 26.0 380 319-762 8-420 (452)
42 3uq3_A Heat shock protein STI1 99.6 7.3E-14 2.5E-18 137.5 24.2 223 527-763 8-236 (258)
43 3u4t_A TPR repeat-containing p 99.6 7.1E-14 2.4E-18 138.9 24.1 236 565-805 9-257 (272)
44 2h6f_A Protein farnesyltransfe 99.6 1.1E-13 3.7E-18 142.7 25.8 245 561-815 99-364 (382)
45 2ho1_A Type 4 fimbrial biogene 99.6 4.5E-13 1.6E-17 131.3 26.8 208 594-805 37-245 (252)
46 4e6h_A MRNA 3'-END-processing 99.6 5.4E-11 1.8E-15 130.8 45.3 448 331-805 49-577 (679)
47 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-13 4.3E-18 134.4 22.1 209 594-807 23-231 (243)
48 2pl2_A Hypothetical conserved 99.6 1.7E-13 6E-18 130.3 22.2 198 558-761 4-212 (217)
49 1ouv_A Conserved hypothetical 99.6 4.9E-12 1.7E-16 125.5 32.8 224 523-764 5-252 (273)
50 2vq2_A PILW, putative fimbrial 99.6 1.4E-12 4.7E-17 125.2 27.5 210 593-805 7-218 (225)
51 3u4t_A TPR repeat-containing p 99.6 5.9E-13 2E-17 132.2 25.1 249 527-781 6-267 (272)
52 2h6f_A Protein farnesyltransfe 99.6 7.3E-13 2.5E-17 136.4 25.4 249 524-781 97-365 (382)
53 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.8E-13 1.3E-17 133.8 22.5 247 536-792 17-269 (275)
54 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.5E-13 1.5E-17 133.3 21.1 229 571-805 17-251 (275)
55 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-12 4.1E-17 121.1 22.2 170 628-802 4-174 (184)
56 4e6h_A MRNA 3'-END-processing 99.5 1.5E-10 5.2E-15 127.3 41.6 454 296-779 49-584 (679)
57 4a1s_A PINS, partner of inscut 99.5 1.6E-13 5.3E-18 145.8 17.1 282 491-804 50-378 (411)
58 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-12 4.3E-17 127.3 21.5 210 561-777 25-235 (243)
59 2ho1_A Type 4 fimbrial biogene 99.5 8E-12 2.7E-16 122.3 26.4 203 562-770 40-243 (252)
60 3sf4_A G-protein-signaling mod 99.5 1.3E-12 4.4E-17 138.4 21.3 282 488-801 8-339 (406)
61 3sf4_A G-protein-signaling mod 99.5 6.7E-13 2.3E-17 140.6 18.4 305 451-787 6-365 (406)
62 2vq2_A PILW, putative fimbrial 99.5 2.2E-11 7.7E-16 116.7 27.5 204 561-769 10-215 (225)
63 3ro2_A PINS homolog, G-protein 99.5 8.2E-13 2.8E-17 135.8 18.0 279 492-802 8-336 (338)
64 2ond_A Cleavage stimulation fa 99.5 4.9E-11 1.7E-15 120.4 30.1 223 576-803 33-275 (308)
65 4abn_A Tetratricopeptide repea 99.5 2.9E-12 9.9E-17 137.6 22.0 212 575-795 84-318 (474)
66 4a1s_A PINS, partner of inscut 99.4 1.1E-12 3.6E-17 139.3 16.8 281 454-763 48-372 (411)
67 3ulq_A Response regulator aspa 99.4 8.8E-12 3E-16 130.6 23.2 232 566-800 110-370 (383)
68 3vtx_A MAMA; tetratricopeptide 99.4 3.4E-11 1.2E-15 111.2 22.8 171 593-769 4-174 (184)
69 2ond_A Cleavage stimulation fa 99.4 2.3E-10 7.9E-15 115.4 29.2 219 541-763 33-270 (308)
70 3nf1_A KLC 1, kinesin light ch 99.4 1.3E-11 4.3E-16 125.3 19.0 242 558-801 26-310 (311)
71 4abn_A Tetratricopeptide repea 99.4 2.1E-11 7.1E-16 130.9 21.5 189 610-805 84-294 (474)
72 3as5_A MAMA; tetratricopeptide 99.4 3.7E-11 1.2E-15 111.1 19.9 171 630-804 9-179 (186)
73 3ro2_A PINS homolog, G-protein 99.4 1.5E-11 5E-16 126.3 18.4 275 176-483 8-332 (338)
74 3ulq_A Response regulator aspa 99.4 4.8E-11 1.6E-15 125.0 22.5 230 530-762 109-367 (383)
75 4i17_A Hypothetical protein; T 99.4 7E-11 2.4E-15 113.5 21.7 202 592-805 5-216 (228)
76 4gyw_A UDP-N-acetylglucosamine 99.4 2.2E-11 7.6E-16 135.7 20.0 167 628-800 8-176 (723)
77 3q15_A PSP28, response regulat 99.3 1.5E-10 5E-15 121.0 23.2 227 568-798 110-365 (378)
78 1hz4_A MALT regulatory protein 99.3 1.8E-09 6.1E-14 112.6 30.7 233 565-805 99-356 (373)
79 3nf1_A KLC 1, kinesin light ch 99.3 2E-11 6.8E-16 123.8 13.8 133 279-411 27-180 (311)
80 1hz4_A MALT regulatory protein 99.3 1.4E-09 4.7E-14 113.4 27.8 268 533-800 23-324 (373)
81 4i17_A Hypothetical protein; T 99.2 9.4E-10 3.2E-14 105.5 22.4 208 556-777 4-222 (228)
82 3q15_A PSP28, response regulat 99.2 1.3E-09 4.6E-14 113.6 24.4 227 532-762 109-364 (378)
83 4gyw_A UDP-N-acetylglucosamine 99.2 4.9E-10 1.7E-14 124.9 21.4 166 592-762 7-173 (723)
84 3as5_A MAMA; tetratricopeptide 99.2 1.9E-09 6.3E-14 99.4 20.1 165 595-763 9-173 (186)
85 1qqe_A Vesicular transport pro 99.2 2.6E-10 9.1E-15 113.9 15.1 198 603-802 46-273 (292)
86 3urz_A Uncharacterized protein 99.2 6.5E-10 2.2E-14 104.6 16.8 131 668-803 58-191 (208)
87 3edt_B KLC 2, kinesin light ch 99.2 3E-10 1E-14 113.1 15.3 227 570-798 12-281 (283)
88 3rjv_A Putative SEL1 repeat pr 99.2 2.6E-09 8.9E-14 100.7 20.6 187 612-810 4-209 (212)
89 3qky_A Outer membrane assembly 99.2 2.9E-09 9.8E-14 104.5 21.6 171 630-805 16-231 (261)
90 3mv2_B Coatomer subunit epsilo 99.1 1.5E-08 5.1E-13 98.4 24.3 186 613-805 85-289 (310)
91 2fo7_A Synthetic consensus TPR 99.1 3.9E-09 1.3E-13 91.2 18.4 133 666-801 3-135 (136)
92 4ga2_A E3 SUMO-protein ligase 99.1 4.4E-10 1.5E-14 99.2 11.1 130 670-805 3-136 (150)
93 1qqe_A Vesicular transport pro 99.1 2.2E-09 7.6E-14 107.1 17.2 182 609-805 32-235 (292)
94 3edt_B KLC 2, kinesin light ch 99.1 1.4E-09 4.7E-14 108.3 15.6 227 535-762 12-280 (283)
95 3mv2_B Coatomer subunit epsilo 99.1 5.3E-08 1.8E-12 94.5 24.4 184 578-770 85-287 (310)
96 3qky_A Outer membrane assembly 99.0 9.4E-09 3.2E-13 100.8 18.6 188 596-787 17-250 (261)
97 4ga2_A E3 SUMO-protein ligase 99.0 1E-09 3.5E-14 96.8 10.3 143 635-784 3-149 (150)
98 2pzi_A Probable serine/threoni 99.0 3.4E-09 1.2E-13 119.1 16.9 173 605-784 402-583 (681)
99 3dra_A Protein farnesyltransfe 99.0 8.4E-08 2.9E-12 94.4 24.6 222 576-802 50-292 (306)
100 3urz_A Uncharacterized protein 99.0 9.6E-09 3.3E-13 96.5 17.1 138 634-777 59-198 (208)
101 2uy1_A Cleavage stimulation fa 99.0 8.5E-07 2.9E-11 94.8 34.0 125 630-762 287-412 (493)
102 2uy1_A Cleavage stimulation fa 99.0 4.7E-07 1.6E-11 96.8 31.9 378 361-797 6-412 (493)
103 2vsy_A XCC0866; transferase, g 99.0 9.9E-09 3.4E-13 113.5 19.2 155 643-802 3-161 (568)
104 4gco_A Protein STI-1; structur 99.0 7E-09 2.4E-13 88.0 13.9 109 695-806 8-118 (126)
105 2pzi_A Probable serine/threoni 99.0 2.7E-09 9.3E-14 119.9 14.6 163 640-809 402-574 (681)
106 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.6E-08 8.8E-13 95.0 19.4 186 595-804 5-219 (225)
107 2ifu_A Gamma-SNAP; membrane fu 99.0 6.5E-09 2.2E-13 104.6 15.1 224 536-790 3-253 (307)
108 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.9E-08 9.9E-13 93.8 18.6 89 634-727 11-99 (213)
109 2fo7_A Synthetic consensus TPR 98.9 4.4E-08 1.5E-12 84.4 17.6 130 631-763 3-132 (136)
110 3dra_A Protein farnesyltransfe 98.9 6.1E-07 2.1E-11 88.3 27.2 232 540-777 49-301 (306)
111 3rjv_A Putative SEL1 repeat pr 98.9 1E-07 3.5E-12 89.6 20.8 175 578-764 5-198 (212)
112 2r5s_A Uncharacterized protein 98.9 1.3E-08 4.6E-13 92.6 14.0 161 632-797 9-172 (176)
113 3qou_A Protein YBBN; thioredox 98.9 2.6E-08 9E-13 98.8 16.8 164 628-797 116-283 (287)
114 3gyz_A Chaperone protein IPGC; 98.9 1.8E-08 6E-13 88.2 13.6 101 699-803 36-138 (151)
115 2qfc_A PLCR protein; TPR, HTH, 98.9 3E-07 1E-11 91.7 23.7 168 631-799 77-267 (293)
116 3u3w_A Transcriptional activat 98.9 5.6E-07 1.9E-11 89.7 24.7 165 634-798 80-266 (293)
117 2ifu_A Gamma-SNAP; membrane fu 98.8 6.2E-08 2.1E-12 97.4 16.8 224 501-755 3-253 (307)
118 4f3v_A ESX-1 secretion system 98.8 1.4E-07 4.7E-12 90.4 18.0 197 606-810 18-247 (282)
119 2vgx_A Chaperone SYCD; alterna 98.8 1E-08 3.6E-13 89.9 9.2 115 685-804 8-124 (148)
120 2yhc_A BAMD, UPF0169 lipoprote 98.8 3E-07 1E-11 87.5 19.4 185 558-763 3-213 (225)
121 3qou_A Protein YBBN; thioredox 98.8 1.2E-07 4.2E-12 94.0 16.9 168 591-762 114-283 (287)
122 2r5s_A Uncharacterized protein 98.8 6.4E-08 2.2E-12 88.1 13.6 161 598-762 10-172 (176)
123 4gco_A Protein STI-1; structur 98.8 1.5E-07 5.2E-12 79.7 15.0 110 665-778 14-124 (126)
124 3sz7_A HSC70 cochaperone (SGT) 98.8 9.9E-08 3.4E-12 85.6 14.1 108 699-809 11-119 (164)
125 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.3E-07 1.5E-11 85.6 18.8 143 667-814 9-166 (213)
126 2e2e_A Formate-dependent nitri 98.7 9.2E-08 3.1E-12 87.2 13.2 126 675-804 21-150 (177)
127 2vsy_A XCC0866; transferase, g 98.7 2.5E-07 8.7E-12 102.1 18.9 152 608-763 3-157 (568)
128 3dss_A Geranylgeranyl transfer 98.7 8.6E-06 2.9E-10 80.5 26.9 195 610-812 90-317 (331)
129 1a17_A Serine/threonine protei 98.7 4.8E-07 1.6E-11 81.2 16.5 130 665-798 14-146 (166)
130 3u3w_A Transcriptional activat 98.7 6.2E-06 2.1E-10 82.0 25.8 163 600-762 81-265 (293)
131 3gw4_A Uncharacterized protein 98.7 2E-07 6.8E-12 87.1 13.4 161 640-801 3-179 (203)
132 3upv_A Heat shock protein STI1 98.7 3.5E-07 1.2E-11 77.7 13.6 98 699-799 4-102 (126)
133 3q7a_A Farnesyltransferase alp 98.7 9E-06 3.1E-10 80.7 25.3 221 576-801 71-335 (349)
134 2xcb_A PCRH, regulatory protei 98.7 1.7E-07 5.7E-12 81.7 11.5 103 699-804 18-121 (142)
135 1hxi_A PEX5, peroxisome target 98.7 2E-07 6.8E-12 78.3 11.4 99 701-803 19-119 (121)
136 2qfc_A PLCR protein; TPR, HTH, 98.6 3.9E-06 1.3E-10 83.5 22.6 164 599-762 80-265 (293)
137 3gyz_A Chaperone protein IPGC; 98.6 5.2E-07 1.8E-11 78.8 14.1 102 664-770 36-138 (151)
138 1p5q_A FKBP52, FK506-binding p 98.6 6.5E-07 2.2E-11 90.9 16.5 131 664-797 147-293 (336)
139 4gcn_A Protein STI-1; structur 98.6 3.4E-07 1.2E-11 77.7 12.0 100 699-802 8-116 (127)
140 2c2l_A CHIP, carboxy terminus 98.6 2.4E-07 8.3E-12 91.4 12.5 196 593-800 3-201 (281)
141 3q49_B STIP1 homology and U bo 98.6 6.4E-07 2.2E-11 77.4 13.9 101 698-801 8-109 (137)
142 3q7a_A Farnesyltransferase alp 98.6 1.8E-05 6.1E-10 78.6 25.2 231 541-777 71-345 (349)
143 2vyi_A SGTA protein; chaperone 98.6 1.2E-06 4.2E-11 74.6 15.0 115 666-784 14-129 (131)
144 2lni_A Stress-induced-phosphop 98.6 8.6E-07 2.9E-11 75.9 14.1 103 699-804 16-119 (133)
145 2hr2_A Hypothetical protein; a 98.6 2.2E-07 7.4E-12 80.0 9.9 103 701-805 13-138 (159)
146 1elw_A TPR1-domain of HOP; HOP 98.6 1E-06 3.6E-11 73.4 14.0 104 699-805 4-108 (118)
147 1na0_A Designed protein CTPR3; 98.6 2.1E-06 7.1E-11 72.4 16.0 104 699-804 9-112 (125)
148 1na0_A Designed protein CTPR3; 98.6 1.2E-06 4.2E-11 73.9 14.4 116 664-783 9-125 (125)
149 2lni_A Stress-induced-phosphop 98.6 7.8E-07 2.7E-11 76.2 13.3 120 661-784 13-133 (133)
150 4gcn_A Protein STI-1; structur 98.6 7.9E-07 2.7E-11 75.4 12.7 108 665-775 9-122 (127)
151 2kck_A TPR repeat; tetratricop 98.6 9.3E-07 3.2E-11 72.9 13.0 104 698-803 5-111 (112)
152 3gw4_A Uncharacterized protein 98.5 2.2E-06 7.7E-11 79.8 16.6 156 606-762 4-175 (203)
153 2dba_A Smooth muscle cell asso 98.5 1.5E-06 5.1E-11 76.1 14.5 104 698-805 27-135 (148)
154 1a17_A Serine/threonine protei 98.5 3.1E-06 1.1E-10 75.8 16.9 130 630-762 14-145 (166)
155 3dss_A Geranylgeranyl transfer 98.5 2.3E-05 7.8E-10 77.5 23.7 155 645-804 90-273 (331)
156 4f3v_A ESX-1 secretion system 98.5 3.2E-06 1.1E-10 80.9 16.8 140 631-775 104-247 (282)
157 3rkv_A Putative peptidylprolyl 98.5 8.6E-07 3E-11 79.2 12.1 69 735-805 64-133 (162)
158 2vgx_A Chaperone SYCD; alterna 98.5 8.6E-07 2.9E-11 77.6 11.8 99 663-763 20-118 (148)
159 2vyi_A SGTA protein; chaperone 98.5 2.1E-06 7.2E-11 73.1 13.9 106 698-806 11-117 (131)
160 2e2e_A Formate-dependent nitri 98.5 1.2E-06 4E-11 79.7 12.2 121 640-763 21-144 (177)
161 3upv_A Heat shock protein STI1 98.5 2.8E-06 9.5E-11 72.0 13.7 97 665-763 5-101 (126)
162 2c2l_A CHIP, carboxy terminus 98.4 1.3E-06 4.5E-11 86.1 12.7 166 628-803 3-169 (281)
163 3k9i_A BH0479 protein; putativ 98.4 2.8E-07 9.7E-12 77.0 6.7 101 712-814 3-107 (117)
164 2fbn_A 70 kDa peptidylprolyl i 98.4 3.2E-06 1.1E-10 78.4 14.7 130 665-798 39-186 (198)
165 2xev_A YBGF; tetratricopeptide 98.4 1.7E-06 5.7E-11 73.7 11.8 101 702-805 5-112 (129)
166 2fbn_A 70 kDa peptidylprolyl i 98.4 4.1E-07 1.4E-11 84.6 8.1 132 671-805 11-158 (198)
167 1elw_A TPR1-domain of HOP; HOP 98.4 1.1E-05 3.7E-10 67.1 15.6 111 664-778 4-115 (118)
168 3ro3_A PINS homolog, G-protein 98.4 1.6E-06 5.4E-11 77.3 11.0 136 666-801 11-161 (164)
169 2xcb_A PCRH, regulatory protei 98.4 1.4E-06 4.8E-11 75.7 10.1 98 664-763 18-115 (142)
170 1elr_A TPR2A-domain of HOP; HO 98.4 5.6E-06 1.9E-10 70.4 13.4 100 700-800 5-110 (131)
171 1elr_A TPR2A-domain of HOP; HO 98.4 3.3E-06 1.1E-10 71.9 11.8 113 665-780 5-123 (131)
172 3q49_B STIP1 homology and U bo 98.4 6.1E-06 2.1E-10 71.0 13.5 101 661-763 6-106 (137)
173 2dba_A Smooth muscle cell asso 98.3 1.6E-05 5.3E-10 69.4 16.0 113 662-779 26-143 (148)
174 3sz7_A HSC70 cochaperone (SGT) 98.3 6.2E-06 2.1E-10 73.7 13.5 99 663-763 10-108 (164)
175 1p5q_A FKBP52, FK506-binding p 98.3 1.1E-05 3.7E-10 81.9 16.7 130 629-762 147-293 (336)
176 1dce_A Protein (RAB geranylger 98.3 2.8E-05 9.4E-10 84.5 20.4 161 642-807 42-230 (567)
177 1wao_1 Serine/threonine protei 98.3 1.6E-06 5.6E-11 92.5 10.4 128 670-801 12-153 (477)
178 2if4_A ATFKBP42; FKBP-like, al 98.3 1.3E-06 4.4E-11 88.7 8.9 155 629-805 179-335 (338)
179 1dce_A Protein (RAB geranylger 98.3 5.7E-06 2E-10 89.8 14.0 188 608-801 43-270 (567)
180 1hxi_A PEX5, peroxisome target 98.2 1.1E-05 3.7E-10 67.6 11.4 93 667-762 20-113 (121)
181 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.6E-05 5.5E-10 84.4 15.0 122 666-790 270-406 (457)
182 4b4t_Q 26S proteasome regulato 98.2 9.2E-05 3.1E-09 78.4 20.6 166 632-797 58-244 (434)
183 1klx_A Cysteine rich protein B 98.2 2.1E-05 7.2E-10 67.5 12.6 112 678-800 9-128 (138)
184 1ihg_A Cyclophilin 40; ppiase 98.2 1.8E-05 6E-10 81.2 13.9 119 667-789 226-361 (370)
185 1zu2_A Mitochondrial import re 98.2 6.2E-06 2.1E-10 70.7 8.6 89 712-803 15-125 (158)
186 2kck_A TPR repeat; tetratricop 98.2 1.7E-05 5.7E-10 65.1 11.3 97 664-763 6-106 (112)
187 2xev_A YBGF; tetratricopeptide 98.1 4.9E-05 1.7E-09 64.3 14.3 96 668-768 6-108 (129)
188 3rkv_A Putative peptidylprolyl 98.1 1.8E-05 6.2E-10 70.4 11.9 100 666-768 13-129 (162)
189 4b4t_Q 26S proteasome regulato 98.1 9.6E-05 3.3E-09 78.3 19.4 56 531-586 11-82 (434)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.3E-05 7.7E-10 83.3 13.4 126 678-806 248-388 (457)
191 1ihg_A Cyclophilin 40; ppiase 98.1 2E-05 6.7E-10 80.9 12.2 104 700-805 224-343 (370)
192 3ro3_A PINS homolog, G-protein 98.1 1.8E-05 6.2E-10 70.2 10.7 132 631-762 11-157 (164)
193 3k9i_A BH0479 protein; putativ 98.1 7.2E-06 2.5E-10 68.3 7.4 87 676-763 2-90 (117)
194 2hr2_A Hypothetical protein; a 98.1 6.1E-05 2.1E-09 64.8 13.0 97 666-762 13-130 (159)
195 2if4_A ATFKBP42; FKBP-like, al 98.1 1.1E-05 3.6E-10 81.9 9.6 122 664-806 179-301 (338)
196 1wao_1 Serine/threonine protei 98.0 2E-05 6.8E-10 84.1 11.8 118 603-723 15-134 (477)
197 1klx_A Cysteine rich protein B 98.0 0.00023 7.9E-09 60.9 15.1 111 643-764 9-127 (138)
198 2kat_A Uncharacterized protein 98.0 2.3E-05 7.8E-10 64.9 8.4 82 717-801 3-85 (115)
199 2l6j_A TPR repeat-containing p 97.9 1.1E-05 3.8E-10 66.3 6.2 94 699-795 4-104 (111)
200 3n71_A Histone lysine methyltr 97.9 0.00014 4.7E-09 76.9 15.2 125 675-799 320-465 (490)
201 3ma5_A Tetratricopeptide repea 97.8 3.6E-05 1.2E-09 61.7 7.3 68 733-802 6-74 (100)
202 2l6j_A TPR repeat-containing p 97.8 0.00016 5.5E-09 59.1 11.0 68 733-802 3-71 (111)
203 1zu2_A Mitochondrial import re 97.7 9.5E-05 3.3E-09 63.4 8.4 95 676-775 14-130 (158)
204 3n71_A Histone lysine methyltr 97.7 0.00031 1.1E-08 74.1 14.2 125 638-762 318-463 (490)
205 1na3_A Designed protein CTPR2; 97.7 0.00017 5.9E-09 56.3 9.0 68 735-804 10-78 (91)
206 1na3_A Designed protein CTPR2; 97.7 0.00036 1.2E-08 54.4 10.9 82 699-783 9-91 (91)
207 1pc2_A Mitochondria fission pr 97.6 0.00038 1.3E-08 58.9 10.7 89 715-805 14-107 (152)
208 2kc7_A BFR218_protein; tetratr 97.6 0.00045 1.5E-08 55.0 10.1 86 706-802 7-94 (99)
209 2kat_A Uncharacterized protein 97.5 0.00056 1.9E-08 56.3 10.4 79 682-762 3-81 (115)
210 2kc7_A BFR218_protein; tetratr 97.5 0.00021 7.3E-09 56.9 6.7 67 739-807 5-73 (99)
211 3bee_A Putative YFRE protein; 97.5 0.00069 2.4E-08 52.8 9.3 68 732-801 4-75 (93)
212 2v5f_A Prolyl 4-hydroxylase su 97.4 0.00098 3.4E-08 53.5 9.9 73 733-805 4-82 (104)
213 3ly7_A Transcriptional activat 97.4 0.0022 7.4E-08 63.5 13.7 139 661-803 191-344 (372)
214 3ma5_A Tetratricopeptide repea 97.3 0.00086 2.9E-08 53.4 8.4 64 698-762 6-69 (100)
215 3qww_A SET and MYND domain-con 97.2 0.0016 5.4E-08 67.5 10.7 94 712-805 311-423 (433)
216 1nzn_A CGI-135 protein, fissio 97.1 0.0028 9.6E-08 51.4 9.5 97 714-812 16-118 (126)
217 3ly7_A Transcriptional activat 97.1 0.0077 2.6E-07 59.6 13.8 142 626-773 191-347 (372)
218 3qww_A SET and MYND domain-con 97.0 0.0037 1.3E-07 64.8 11.5 86 677-762 311-410 (433)
219 3qwp_A SET and MYND domain-con 97.0 0.0044 1.5E-07 64.4 12.1 99 707-805 295-412 (429)
220 3u64_A Protein TP_0956; tetrat 96.9 0.11 3.8E-06 49.1 19.4 83 715-801 179-272 (301)
221 3o48_A Mitochondria fission 1 96.9 0.014 4.8E-07 47.4 11.3 84 729-812 35-122 (134)
222 3u64_A Protein TP_0956; tetrat 96.9 0.13 4.4E-06 48.7 19.6 107 679-797 178-297 (301)
223 3qwp_A SET and MYND domain-con 96.8 0.012 4E-07 61.1 13.3 91 672-762 295-399 (429)
224 1y8m_A FIS1; mitochondria, unk 96.7 0.041 1.4E-06 45.4 13.2 83 730-812 35-121 (144)
225 3mkq_A Coatomer beta'-subunit; 96.6 0.092 3.1E-06 60.4 21.1 123 325-480 610-733 (814)
226 1pc2_A Mitochondria fission pr 96.6 0.015 5E-07 49.3 10.1 85 680-768 14-103 (152)
227 2v5f_A Prolyl 4-hydroxylase su 96.4 0.035 1.2E-06 44.2 10.7 68 699-768 5-78 (104)
228 4h7y_A Dual specificity protei 96.3 0.072 2.5E-06 44.2 12.0 102 698-802 12-127 (161)
229 3mkq_A Coatomer beta'-subunit; 96.0 0.21 7.2E-06 57.3 19.2 129 283-444 633-761 (814)
230 3bee_A Putative YFRE protein; 96.0 0.039 1.3E-06 42.7 8.8 63 698-762 5-71 (93)
231 3mkq_B Coatomer subunit alpha; 95.8 0.58 2E-05 40.6 16.1 101 324-445 15-115 (177)
232 3mkq_B Coatomer subunit alpha; 95.5 0.82 2.8E-05 39.7 16.0 100 640-760 16-115 (177)
233 1nzn_A CGI-135 protein, fissio 95.5 0.06 2E-06 43.7 8.2 88 677-768 14-106 (126)
234 4h7y_A Dual specificity protei 95.4 0.21 7.2E-06 41.5 11.1 102 663-767 12-127 (161)
235 1wy6_A Hypothetical protein ST 95.2 0.99 3.4E-05 36.6 14.5 66 454-520 91-156 (172)
236 1wy6_A Hypothetical protein ST 94.7 1.4 4.7E-05 35.8 15.4 139 642-802 20-158 (172)
237 4ady_A RPN2, 26S proteasome re 94.5 8.1 0.00028 43.5 45.4 151 569-727 500-657 (963)
238 4b4t_P 26S proteasome regulato 94.3 3.8 0.00013 42.4 20.5 271 503-800 30-326 (445)
239 3lvg_A Clathrin heavy chain 1; 93.6 8.3E-05 2.8E-09 74.5 -15.3 195 172-397 82-276 (624)
240 4gns_B Protein CSD3, chitin bi 93.5 0.34 1.2E-05 53.4 10.9 54 741-796 344-398 (754)
241 3o48_A Mitochondria fission 1 93.1 1.2 4E-05 36.3 10.7 71 696-768 37-110 (134)
242 4ady_A RPN2, 26S proteasome re 93.0 15 0.0005 41.5 49.5 265 497-772 382-664 (963)
243 1y8m_A FIS1; mitochondria, unk 92.9 3 0.0001 34.4 13.0 71 696-768 36-109 (144)
244 3lvg_A Clathrin heavy chain 1; 92.3 0.0014 4.8E-08 65.9 -8.7 236 278-544 82-324 (624)
245 4gns_B Protein CSD3, chitin bi 91.1 0.88 3E-05 50.1 10.5 130 210-340 250-397 (754)
246 1v54_E Cytochrome C oxidase po 91.0 2 6.7E-05 32.8 8.9 65 749-814 25-89 (109)
247 3ffl_A Anaphase-promoting comp 90.3 4.8 0.00016 34.3 11.9 121 668-801 24-154 (167)
248 4b4t_P 26S proteasome regulato 89.4 21 0.00073 36.8 20.6 96 667-762 140-246 (445)
249 3ffl_A Anaphase-promoting comp 89.3 2 6.8E-05 36.6 8.8 133 632-779 23-165 (167)
250 3txn_A 26S proteasome regulato 88.8 21 0.00072 35.9 20.2 93 284-376 104-208 (394)
251 3lpz_A GET4 (YOR164C homolog); 88.1 20 0.00069 34.8 22.1 82 627-727 134-215 (336)
252 2y69_E Cytochrome C oxidase su 87.2 4.4 0.00015 32.8 8.9 64 750-814 69-132 (152)
253 4fhn_B Nucleoporin NUP120; pro 86.9 14 0.00049 43.7 17.6 87 419-507 899-989 (1139)
254 2ff4_A Probable regulatory pro 86.5 3.9 0.00013 41.5 10.9 70 701-771 173-247 (388)
255 1zbp_A Hypothetical protein VP 86.4 2.2 7.6E-05 39.7 8.0 53 709-762 7-59 (273)
256 1zbp_A Hypothetical protein VP 85.6 23 0.0008 33.0 14.5 53 674-727 7-59 (273)
257 2wpv_A GET4, UPF0363 protein Y 85.0 28 0.00097 33.5 22.0 82 627-727 132-216 (312)
258 2ff4_A Probable regulatory pro 84.9 5.7 0.0002 40.2 11.3 72 667-739 174-250 (388)
259 1v54_E Cytochrome C oxidase po 84.6 12 0.0004 28.7 9.7 62 644-706 25-86 (109)
260 4fhn_B Nucleoporin NUP120; pro 83.8 14 0.00048 43.8 15.5 167 564-752 817-989 (1139)
261 3lpz_A GET4 (YOR164C homolog); 83.8 33 0.0011 33.3 23.1 111 317-442 38-159 (336)
262 2p58_C Putative type III secre 82.7 8.7 0.0003 29.1 8.1 78 294-379 22-99 (116)
263 2uwj_G Type III export protein 80.8 8.5 0.00029 29.2 7.4 78 294-379 21-98 (115)
264 2wpv_A GET4, UPF0363 protein Y 80.8 42 0.0014 32.4 22.5 168 209-411 34-215 (312)
265 3esl_A Checkpoint serine/threo 80.0 21 0.00071 31.6 11.1 67 701-768 82-149 (202)
266 3txn_A 26S proteasome regulato 79.8 53 0.0018 33.0 23.8 92 599-690 104-207 (394)
267 3esl_A Checkpoint serine/threo 79.6 11 0.00037 33.4 9.2 57 677-733 92-149 (202)
268 4b4t_R RPN7, 26S proteasome re 79.6 21 0.00073 36.6 13.3 60 667-726 134-195 (429)
269 2y69_E Cytochrome C oxidase su 79.5 20 0.0007 29.1 9.7 62 644-706 68-129 (152)
270 1qsa_A Protein (soluble lytic 78.3 79 0.0027 34.1 34.8 204 572-795 227-439 (618)
271 4b4t_R RPN7, 26S proteasome re 77.1 18 0.00061 37.2 11.8 99 630-728 132-237 (429)
272 4a1g_A Mitotic checkpoint seri 67.9 26 0.0009 29.4 8.4 52 716-767 82-134 (152)
273 3mv2_A Coatomer subunit alpha; 66.4 41 0.0014 32.3 10.3 18 675-692 125-142 (325)
274 4a1g_A Mitotic checkpoint seri 64.7 61 0.0021 27.2 10.0 50 683-732 84-134 (152)
275 2wvi_A Mitotic checkpoint seri 63.8 37 0.0013 28.9 8.6 54 716-769 77-131 (164)
276 2p58_C Putative type III secre 62.9 48 0.0017 25.2 8.6 77 328-414 21-99 (116)
277 2uwj_G Type III export protein 62.7 47 0.0016 25.3 7.7 77 328-414 20-98 (115)
278 2wvi_A Mitotic checkpoint seri 59.3 83 0.0028 26.8 10.3 55 751-805 77-132 (164)
279 1qsa_A Protein (soluble lytic 57.8 2.1E+02 0.0071 30.9 36.5 330 282-657 10-347 (618)
280 4aez_C MAD3, mitotic spindle c 50.3 36 0.0012 30.7 6.6 52 716-767 131-183 (223)
281 3eiq_C Programmed cell death p 48.6 83 0.0028 31.0 9.6 66 667-733 220-287 (358)
282 3mkr_B Coatomer subunit alpha; 42.8 61 0.0021 31.1 7.3 19 674-692 112-130 (320)
283 1wdy_A 2-5A-dependent ribonucl 42.4 44 0.0015 31.4 6.8 12 404-415 199-210 (285)
284 4gq2_M Nucleoporin NUP120; bet 41.1 1.5E+02 0.0051 34.1 11.8 127 670-814 816-942 (950)
285 3eiq_C Programmed cell death p 41.1 1.4E+02 0.0049 29.3 9.9 64 353-417 221-286 (358)
286 2d2s_A Exocyst complex compone 40.8 1.8E+02 0.0063 26.5 10.1 21 321-341 25-45 (235)
287 1wdy_A 2-5A-dependent ribonucl 40.8 60 0.0021 30.4 7.5 10 287-296 10-19 (285)
288 2zu6_B Programmed cell death p 39.4 1E+02 0.0035 29.6 8.4 66 667-733 169-236 (307)
289 4aez_C MAD3, mitotic spindle c 34.9 1E+02 0.0034 27.8 7.0 48 647-694 132-180 (223)
290 3ltm_A Alpha-REP4; protein eng 33.2 2.5E+02 0.0085 24.6 17.7 92 662-762 93-184 (211)
291 3eu9_A Huntingtin-interacting 32.3 43 0.0015 30.5 4.7 18 214-231 45-62 (240)
292 2ijq_A Hypothetical protein; s 31.9 2.3E+02 0.008 23.9 8.7 60 176-236 36-103 (161)
293 2nsz_A Programmed cell death p 31.2 1.4E+02 0.0047 24.2 6.8 24 353-376 11-34 (129)
294 3eu9_A Huntingtin-interacting 30.5 53 0.0018 29.8 5.0 16 321-336 46-61 (240)
295 1k1a_A B-cell lymphoma 3-encod 30.3 85 0.0029 28.4 6.4 14 325-338 87-100 (241)
296 2d2s_A Exocyst complex compone 29.6 2.8E+02 0.0095 25.3 9.3 22 286-307 25-46 (235)
297 1k1a_A B-cell lymphoma 3-encod 29.0 77 0.0026 28.8 5.8 84 286-373 13-100 (241)
298 4b4t_S RPN3, 26S proteasome re 28.6 3.2E+02 0.011 28.5 10.4 64 630-693 232-299 (523)
299 3ax2_A Mitochondrial import re 28.0 1.4E+02 0.0049 21.2 5.4 24 739-762 22-45 (73)
300 3pvs_A Replication-associated 27.4 5.1E+02 0.017 26.4 13.7 54 711-764 267-325 (447)
301 3kae_A CDC27, possible protein 27.1 2.9E+02 0.01 23.6 12.4 55 708-762 71-142 (242)
302 4gq2_M Nucleoporin NUP120; bet 26.6 4E+02 0.014 30.5 12.2 49 420-468 898-950 (950)
303 4b4t_S RPN3, 26S proteasome re 26.2 1.5E+02 0.0053 30.7 7.6 64 699-762 231-298 (523)
304 2zu6_B Programmed cell death p 26.1 1.2E+02 0.0039 29.2 6.4 24 317-340 6-29 (307)
305 3kea_A K1L; tropism, ANK repea 26.1 1.1E+02 0.0038 28.8 6.5 14 321-334 66-79 (285)
306 3pvs_A Replication-associated 25.2 5.5E+02 0.019 26.1 13.5 55 361-415 267-326 (447)
307 3kae_A CDC27, possible protein 23.9 3.4E+02 0.012 23.2 17.6 151 641-801 45-240 (242)
308 2nsz_A Programmed cell death p 23.7 2.9E+02 0.0098 22.2 9.6 63 668-731 11-75 (129)
309 2xig_A Ferric uptake regulatio 23.3 3.2E+02 0.011 22.7 8.0 58 199-257 18-75 (150)
310 2ion_A PDCD4, programmed cell 23.2 1.4E+02 0.0049 25.0 5.7 84 352-436 12-97 (152)
311 1oyz_A Hypothetical protein YI 22.9 4.5E+02 0.015 24.2 22.3 150 646-814 127-277 (280)
312 3jxi_A Vanilloid receptor-rela 22.9 42 0.0014 31.2 2.7 8 325-332 101-108 (260)
313 3bqo_A Telomeric repeat-bindin 22.5 3.5E+02 0.012 23.7 7.8 119 209-330 24-166 (211)
314 2w2u_A Hypothetical P60 katani 22.3 87 0.003 23.0 3.6 19 744-762 29-47 (83)
315 3ubw_A 14-3-3E, 14-3-3 protein 22.1 4.7E+02 0.016 24.1 11.6 170 593-762 30-227 (261)
316 3hra_A Ankyrin repeat family p 21.4 1.1E+02 0.0038 26.7 5.1 13 474-486 158-170 (201)
317 2xig_A Ferric uptake regulatio 21.4 3.2E+02 0.011 22.6 7.6 44 495-538 32-75 (150)
318 3jxi_A Vanilloid receptor-rela 21.3 55 0.0019 30.3 3.2 25 286-314 97-121 (260)
319 2ijq_A Hypothetical protein; s 21.1 3.8E+02 0.013 22.7 8.3 51 677-727 45-103 (161)
320 2v6y_A AAA family ATPase, P60 20.5 99 0.0034 22.7 3.6 19 744-762 21-39 (83)
321 3mv2_A Coatomer subunit alpha; 20.4 5.8E+02 0.02 24.5 12.1 17 605-621 125-141 (325)
322 2keb_A DNA polymerase subunit 20.4 2.8E+02 0.0097 21.0 7.0 31 718-748 28-58 (101)
323 1o9d_A 14-3-3-like protein C; 20.3 5.2E+02 0.018 23.9 13.5 40 600-639 14-55 (260)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-39 Score=366.83 Aligned_cols=513 Identities=11% Similarity=-0.000 Sum_probs=304.2
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHH
Q 003451 183 LGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNK 262 (819)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~ 262 (819)
..+.|.+..+...+..+. .++...|+.++..|.+.|++++|+.+|++|.+. .|+..++..++.+|.+.| ++++
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~~~ 135 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTG-DYAR 135 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTT-CHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcC-cHHH
Confidence 445566666655555443 236778888888888888888888888888754 457777888888888888 7888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 003451 263 IMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKI 342 (819)
Q Consensus 263 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 342 (819)
|..+|+++... .++..+++.++.+|.+.|++++|.++|+++.. +.. ....+.+.++ ..
T Consensus 136 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~ 193 (597)
T 2xpi_A 136 AKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QD 193 (597)
T ss_dssp HHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CC
T ss_pred HHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------cc
Confidence 88888776532 45667777777777777777777777764211 110 0001111110 11
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCH
Q 003451 343 NGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAM--KV-FEEMRSAGCKPNI 419 (819)
Q Consensus 343 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~ 419 (819)
.|...+..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+...+...+..+.+. .+ +..+...+.....
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 234456778888888888888888888888888876422 4445555544433322222111 11 3333333333344
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003451 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAY 499 (819)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 499 (819)
.+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++..|.+.|++++|.++|+++.+.+.. +..++..++.++
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 349 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASL 349 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHH
Confidence 55666667777777777777777776654 456666666666666666666666666666655422 455566666666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003451 500 SRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQML 579 (819)
Q Consensus 500 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 579 (819)
.+.|++++|.++++.+.+... .+..+++.++..|.+.|++++|.++|+++.+.. +.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---------------------- 405 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQ---------------------- 405 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT----------------------
T ss_pred HHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CC----------------------
Confidence 666666666666666654322 245555555555555565555555555554321 11
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC
Q 003451 580 ALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG 659 (819)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 659 (819)
+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 406 ------------------------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 406 ------------------------------------------------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33344444444555555555555555554432
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--
Q 003451 660 FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD-- 733 (819)
Q Consensus 660 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-- 733 (819)
+.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+
T Consensus 438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~ 515 (597)
T 2xpi_A 438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515 (597)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGG
T ss_pred -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhH
Confidence 3345566666666666666666666666666542 225666666667777777777777777666654 45565
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCC
Q 003451 734 VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 734 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
..+|..++.+|.+.|++++|+++++++.+.+ ..+..+|..++.+|.+.|++++|.+.++++.+++|+++
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 5677777777777777777777777777642 22667777777777777777777777777777777663
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-39 Score=367.05 Aligned_cols=474 Identities=11% Similarity=-0.042 Sum_probs=310.1
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 003451 277 PDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLI 356 (819)
Q Consensus 277 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 356 (819)
++...|+.++..|.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|..+|+++.. ..++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence 45666777777777777777777777776643 45666666677777777777777777766643 244666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 003451 357 SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFV 436 (819)
Q Consensus 357 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 436 (819)
.+|.+.|++++|.++|+++.. +.. ...++...++ ...+...+..+|+.++.+|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHH
Confidence 666666777766666664211 110 0000000000 01123334555555555555555555
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHH
Q 003451 437 EMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSI-YKRM 515 (819)
Q Consensus 437 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~ 515 (819)
+|+++|+++.+.+ +.+...+..+...+...+..+.+.. ..+ +..+
T Consensus 218 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~---------------------------------~~l~~~~~ 263 (597)
T 2xpi_A 218 RAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLV---------------------------------LKLNYSTY 263 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHH---------------------------------HHSCTHHH
T ss_pred HHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHH---------------------------------HhcCCccc
Confidence 5555555555432 2233333333333322221111100 000 2222
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 003451 516 LEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAV 595 (819)
Q Consensus 516 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 595 (819)
...+......+|+.++..|.+.|++++|.++|+++.+. +++..++..++.+|.+.|++++|+.+++++.+.+ +.+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 340 (597)
T 2xpi_A 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLD 340 (597)
T ss_dssp HGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCT
T ss_pred ccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHH
Confidence 22222223333444444455555555555555555443 3455555555555555555555555555555433 22444
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 003451 596 LLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS 675 (819)
Q Consensus 596 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 675 (819)
++..++.++.+.|++++|..+++++.+.. +.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 418 (597)
T 2xpi_A 341 VYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFA 418 (597)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 55556666666666666667776666543 3467888999999999999999999999998753 456889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003451 676 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 755 (819)
+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. ..+..+|..++..|.+.|++++|++
T Consensus 419 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 419 IEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999999864 3478999999999999999999999999999853 3378899999999999999999999
Q ss_pred HHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Q 003451 756 VVRYMIKQ----GCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRIAK 816 (819)
Q Consensus 756 ~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~~ 816 (819)
+++++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+|++ ...|..+...+.+
T Consensus 497 ~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND-ANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH
Confidence 99999876 66786 7899999999999999999999999999999876 4566666665543
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.7e-26 Score=242.61 Aligned_cols=333 Identities=13% Similarity=0.065 Sum_probs=153.1
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003451 425 LIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGS 504 (819)
Q Consensus 425 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 504 (819)
+...+...|++++|...++...+.. +.+...|..+...|.+.|++++|...|+++.+.. +.+..++..++..+...|+
T Consensus 39 l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 39 LSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCC
Confidence 3333334444444444443333321 2233334444444444444444444444443321 1123334444444444444
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 003451 505 FDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEE 584 (819)
Q Consensus 505 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 584 (819)
+++|.+.|+++.+.+.. +...+..+...+...|++++|.+.|+++.... +.+..+|..+...+...|++++|+..+++
T Consensus 117 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp SSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444444444443221 23334444444444455555555555444321 22233444444444444444444444444
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH
Q 003451 585 IYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL 664 (819)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~ 664 (819)
+++.. +. +...+..+...+...|++++|...+++..+.. +.+.
T Consensus 195 al~~~-p~-----------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 195 AVTLD-PN-----------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHHC-TT-----------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHhcC-CC-----------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence 43322 12 33344444444445555555555555444432 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003451 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 744 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 744 (819)
.++..++.+|...|++++|++.|+++++.+ +.+..+|..++.++.+.|++++|.+.++++.+.. ..+..++..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 445555555555555555555555555432 1134455555555555555555555555555431 22444555555555
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 745 AADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
...|++++|+..++++++. .| +..++..++.+|.+.|++++|...++++.+..|+.
T Consensus 316 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 5555555555555555542 23 34555555555555555555555555555555544
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=2.6e-29 Score=268.60 Aligned_cols=207 Identities=15% Similarity=0.164 Sum_probs=130.7
Q ss_pred HHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--------CH
Q 003451 190 SVAASLLHGLHKDGFDIDV-YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGM--------PW 260 (819)
Q Consensus 190 ~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~--------~~ 260 (819)
..++.+...+.+.+....+ .+++.+|++|++.|++++|+.+|++|.+.|+.||..+||+||.+|++.+. ..
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3444555556555554433 35777888888888888888888888888888888888888888876651 14
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHH
Q 003451 261 NKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (819)
Q Consensus 261 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 340 (819)
++|.++|++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003451 341 KINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK 396 (819)
Q Consensus 341 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~ 396 (819)
.+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666666666666666666666666666666666666666666554
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.2e-26 Score=243.29 Aligned_cols=342 Identities=10% Similarity=0.056 Sum_probs=253.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003451 463 VFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQ 542 (819)
Q Consensus 463 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 542 (819)
.+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+... .+...|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHH
Confidence 3444555555555555554432 12334445555555566666666666665555432 255666666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 003451 543 SEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKK 622 (819)
Q Consensus 543 A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 622 (819)
|+..|+++.... +.+..+|..+..++...|++++|...++++++.. +.+...+..++..+...|++++|...|+++.+
T Consensus 86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665532 2334456666666666666666666666666543 33445566677777778888888888888777
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 003451 623 KGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISY 702 (819)
Q Consensus 623 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 702 (819)
.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 63 2367889999999999999999999999999864 4567789999999999999999999999999863 2358899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003451 703 NTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCK 781 (819)
Q Consensus 703 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 781 (819)
..++.+|...|++++|.+.++++.+. .| +..+|..++.++.+.|++++|+..++++++.. ..+..++..++..+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 99999999999999999999999985 34 56789999999999999999999999999852 3478999999999999
Q ss_pred cCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Q 003451 782 LNQRYEAITFVNNLSKLDPHVTKELECKLSDRIA 815 (819)
Q Consensus 782 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l~ 815 (819)
.|++++|...++++.+..|++. ..+..+...+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~ 350 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFA-AAHSNLASVLQ 350 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCH-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHH
Confidence 9999999999999999998874 44555555543
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=4.8e-29 Score=266.50 Aligned_cols=205 Identities=18% Similarity=0.302 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC---------H
Q 003451 226 EAVMVFKKMEEEGCKPTL-ITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSL---------H 295 (819)
Q Consensus 226 ~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~---------~ 295 (819)
.+..+++++.+.+..... ..++.+|++|++.| ++++|.++|++|.+.|+.||..||++||.+|++.+. +
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G-~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKG-DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSC-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 445555666665554433 34666777777777 677777777777777777777777777777765543 5
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003451 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQM 375 (819)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 375 (819)
++|.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003451 376 VEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (819)
Q Consensus 376 ~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (819)
.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..++.
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777766654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.2e-24 Score=237.63 Aligned_cols=455 Identities=11% Similarity=0.045 Sum_probs=279.3
Q ss_pred HhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003451 315 VTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGF 394 (819)
Q Consensus 315 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~ 394 (819)
..+..+...+.+.|++++|...|+++.+.. |+..+|..++.+|.+.|++++|++.++++.+.+ +.+..++..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345555666666777777777777666643 466666666667777777777777777666653 22445666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003451 395 EKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVS 474 (819)
Q Consensus 395 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 474 (819)
...|++++|...|+++.+.+. .+......++..+........+.+.+..+...+..++...+........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------- 153 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKD--------- 153 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHh---------
Confidence 666666666666666666542 2333333333333332222333332222222211111111111000000
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Q 003451 475 GVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR---GGMWEQSEKIFAEMK 551 (819)
Q Consensus 475 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~ 551 (819)
.....|+.......+..+...... .......+...+......+.. .|++++|..+|+++.
T Consensus 154 -------~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 154 -------KQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred -------hccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 001111111111110000000000 000001123444444444443 677777777777776
Q ss_pred h-----CCC--------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 003451 552 G-----GRC--------KPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFL 618 (819)
Q Consensus 552 ~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 618 (819)
+ ... +.+..++..+...+...|++++|...++++++.... ...+..++.++...|++++|...++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~ 294 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFD 294 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5 211 122445666777777888888888888887775433 6777778888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003451 619 ELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD 698 (819)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 698 (819)
++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..|...|++++|...++++.+.. +.+
T Consensus 295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 371 (514)
T 2gw1_A 295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA 371 (514)
T ss_dssp HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence 887654 2356677888888888888888888888888764 4456778888888888889999999888888753 235
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCC-CH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV-PD----VITYNTFVASYAA---DSLFVEALDVVRYMIKQGCKP-NQ 769 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p-~~ 769 (819)
...+..++..|...|++++|...++++.+.... ++ ...+..++..+.. .|++++|+..++++++. .| +.
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~ 449 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSE 449 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccH
Confidence 677888888888889999999888888763211 11 3378888888888 88899999999888874 34 67
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.++..++.+|.+.|++++|...++++.+.+|+++...
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 7888888888899999999999999999888775553
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.7e-23 Score=224.48 Aligned_cols=459 Identities=10% Similarity=-0.034 Sum_probs=319.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 003451 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS 357 (819)
Q Consensus 278 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 357 (819)
....+......+.+.|++++|...|+++...+ |+..+|..+..+|.+.|++++|...++++.+.+ +.+..+|..++.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35567788889999999999999999999985 789999999999999999999999999998863 447789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003451 358 AYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVE 437 (819)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 437 (819)
+|.+.|++++|.+.|+++.+.+. ++......++..+........+.+.+..+...+..++..........
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------- 151 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER--------- 151 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH---------
Confidence 99999999999999999998753 34444455555555544455555555554444333332221111100
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHH
Q 003451 438 MMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR---CGSFDQAMSIYKR 514 (819)
Q Consensus 438 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 514 (819)
.. .....|+.......+..+....... ....+.+...+......+.. .|++++|..+|++
T Consensus 152 ----~~---~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 152 ----KD---KQENLPSVTSMASFFGIFKPELTFA----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCS----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred ----Hh---hccCCchhHHHHHHHhhcCHHHHHH----------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 00 0011233222221111111110000 00001123334444444443 6777888887777
Q ss_pred HHH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003451 515 MLE-----AGV--------TPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLAL 581 (819)
Q Consensus 515 ~~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 581 (819)
+.+ ... ..+...+..+...+...|++++|...|+++.+.. |+...+..+..+|...|++++|+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGH
T ss_pred HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 776 311 1134566777778888888888888888887653 3367777788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 003451 582 SEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT 661 (819)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 661 (819)
+++++... +.+...+..++.++...|++++|...++++.+.... +...+..++..+...|++++|.+.++++.+.. +
T Consensus 293 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 369 (514)
T 2gw1_A 293 FDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-P 369 (514)
T ss_dssp HHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-c
Confidence 88887764 445667788888888899999999999988876433 56778888889999999999999999988753 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCC
Q 003451 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCR---NGRMKEASRIFSEMRDSGLVPD 733 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~ 733 (819)
.+...+..++..|...|++++|...++++.+.... ++ ...+..++.++.. .|++++|.+.++++.+.. ..+
T Consensus 370 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 448 (514)
T 2gw1_A 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRS 448 (514)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTC
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-ccc
Confidence 46678888999999999999999999998864211 11 3388899999999 999999999999998853 235
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHH
Q 003451 734 VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNS 774 (819)
Q Consensus 734 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 774 (819)
..++..++.++...|++++|...++++++. .|+ ...+..
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~ 488 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTMEEKLQA 488 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccHHHHHH
Confidence 678889999999999999999999999984 564 344433
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=3.1e-22 Score=221.72 Aligned_cols=444 Identities=14% Similarity=0.061 Sum_probs=258.6
Q ss_pred HHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003451 314 KVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSG 393 (819)
Q Consensus 314 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~ 393 (819)
...+..+...+.+.|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4556677777788888888888888877652 3467777777778888888888888888877764 3356677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHhc
Q 003451 394 FEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCN------CKPDIVTWNTLLAVFGQN 467 (819)
Q Consensus 394 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~ 467 (819)
+...|++++|...|+.+ .. .|+ .....+..+...+...+|...++++.... ..|+. ..+..+...
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~ 173 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGI 173 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHh
Confidence 77777777777777533 22 111 11222333444445566666666664421 11111 122222223
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003451 468 GMDSEVSGVFKEMKRAGFIPERD-TFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKI 546 (819)
Q Consensus 468 g~~~~a~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 546 (819)
.+.+.+...+...... .+... ....+...+...+ .......|++++|..+
T Consensus 174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~ 224 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDM 224 (537)
T ss_dssp SCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHH
Confidence 3333322222111110 01100 1111111111100 0001112355666666
Q ss_pred HHHHHhCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 003451 547 FAEMKGGRCKPNE-------LTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLE 619 (819)
Q Consensus 547 ~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 619 (819)
++++.+.. +.+. .++..+...+...|++++|...++++++.. |+...+..++..+...|++++|...+++
T Consensus 225 ~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 225 YHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66666542 1121 234444455666677777777777766643 3355666667777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 003451 620 LKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDI 699 (819)
Q Consensus 620 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 699 (819)
+.+.. +.+..++..++..+...|++++|.+.++++.+.. +.+...+..++.+|...|++++|..+++++.+.. +.+.
T Consensus 302 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 378 (537)
T 3fp2_A 302 AVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLP 378 (537)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCT
T ss_pred HhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh
Confidence 76653 2356667777777777777777777777777653 3345667777777777778888888777777653 2346
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcC
Q 003451 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDSG-----LVPDVITYNTFVASYAAD----------SLFVEALDVVRYMIKQG 764 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 764 (819)
..+..++..+...|++++|.+.++++.+.. .......+...+.++... |++++|+..++++++.
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~- 457 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL- 457 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh-
Confidence 677777777777788888887777776531 111122344555666666 7788888888877764
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 765 CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 765 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.| +..++..++.+|.+.|++++|...++++.++.|.....
T Consensus 458 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 458 -DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHH
T ss_pred -CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 34 56777777778888888888888888888877776554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=1.6e-21 Score=210.57 Aligned_cols=351 Identities=11% Similarity=0.091 Sum_probs=229.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003451 418 NICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLIS 497 (819)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 497 (819)
+...+..++..+.+.|++++|+.+|+++.... +.+...|..+..++...|++++|...|+++.+.+.. +..++..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 34455555555555555555555555554432 234455555555555555555555555555544321 3444445555
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 003451 498 AYSRCGSFDQAMSIYKRMLEAGVTPDL---STYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGRE 574 (819)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 574 (819)
.|...|++++|.+.|+++.+.... +. ..+..++..+... .+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 555555555555555555443211 12 2333332221000 11122334666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003451 575 IDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHF 654 (819)
Q Consensus 575 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 654 (819)
+++|+..++++++.. +.+...+..++.+|...|++++|...|+++.+.. +.+..++..++..|...|++++|++.+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777777643 4566677777788888888888888888877653 33677788888888888888888888888
Q ss_pred HhhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHhcCCHHH
Q 003451 655 MNDSGFTPSLTTYNTL------------MYMYSRSENFARAEDVLREILAKGIKPD-----IISYNTVIFAYCRNGRMKE 717 (819)
Q Consensus 655 ~~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~ 717 (819)
+.+.. +.+...+..+ +.+|...|++++|..+|+++++. .|+ ...|..++.++.+.|++++
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 87653 3344444444 78899999999999999999875 344 4478888999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH------------HHhcC-
Q 003451 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG------------YCKLN- 783 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~------------~~~~g- 783 (819)
|...++++.+.. ..+..+|..++.+|...|++++|+..++++++ +.| +..++..++.+ |...|
T Consensus 314 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 314 AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999998742 22678899999999999999999999999998 567 56777777733 44445
Q ss_pred ----CHhHHHHHHHH-hhhcCCCC
Q 003451 784 ----QRYEAITFVNN-LSKLDPHV 802 (819)
Q Consensus 784 ----~~~~A~~~~~~-~~~~~p~~ 802 (819)
+.+++.+.+++ +.+..|+.
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGG
T ss_pred CccCCHHHHHHHHHHHHHHhCCCC
Confidence 66788998887 77777764
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=4.5e-21 Score=212.40 Aligned_cols=439 Identities=8% Similarity=-0.011 Sum_probs=297.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 003451 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS 357 (819)
Q Consensus 278 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 357 (819)
....+..+...+.+.|++++|...|+++.... +.+..++..+..+|.+.|++++|++.++++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35678888999999999999999999999874 4578899999999999999999999999998863 447889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHc
Q 003451 358 AYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG------CKPNICTFNALIKMHGN 431 (819)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~ 431 (819)
.+...|++++|++.|+ .... .|+.. ...+..+...+..++|...++++.... ..|+. ..+..+..
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHH
Confidence 9999999999999996 3332 23322 223445566677788999999986541 22333 33444556
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 003451 432 RGNFVEMMKVFDEINKCNCKPDIV-TWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMS 510 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 510 (819)
..+.+.+...+...... .+... ....+...+...+ . ......|++++|..
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~---------------------~------~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATD---------------------E------GYLVANDLLTKSTD 223 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSH---------------------H------HHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhh---------------------h------hhHHHHHHHHHHHH
Confidence 66777666555443322 22222 2222222222211 0 01111234455555
Q ss_pred HHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 003451 511 IYKRMLEAGVTPD-------LSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSE 583 (819)
Q Consensus 511 ~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 583 (819)
+++.+.+.... + ..++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|+..++
T Consensus 224 ~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 224 MYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55555443221 1 123444455566666777777777766654 3445666666666677777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC
Q 003451 584 EIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS 663 (819)
Q Consensus 584 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 663 (819)
++++.. +.+...+..++.++...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+
T Consensus 301 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 377 (537)
T 3fp2_A 301 KAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTL 377 (537)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 766643 44566677777777777888888888877776542 245677888888888889999998888888764 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 003451 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGI-----KPDIISYNTVIFAYCRN----------GRMKEASRIFSEMRDS 728 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 728 (819)
...+..++..+...|++++|.+.|+++++... ......+..+..++... |++++|...++++.+.
T Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 67788888889999999999999998875321 11122344556677777 9999999999998885
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 729 GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 729 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
. ..+..++..++.++...|++++|...++++++.
T Consensus 458 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 458 D-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3 225678888999999999999999999999884
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=3.7e-21 Score=207.76 Aligned_cols=333 Identities=13% Similarity=0.089 Sum_probs=257.0
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 438 MMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE 517 (819)
Q Consensus 438 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 517 (819)
+...+.++.... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|...|+.+.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444332 4456777778888888888888888888877653 23667777788888888888888888888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 003451 518 AGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNE----LTYSSLLHAYANGREIDQMLALSEEIYSGIIEPH 593 (819)
Q Consensus 518 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 593 (819)
.+.. +...+..+...|.+.|++++|...|+++.+. .|+. ..+..+...+...
T Consensus 89 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~--------------------- 144 (450)
T 2y4t_A 89 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQ--------------------- 144 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHH---------------------
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHH---------------------
Confidence 6543 5677777888888888888888888888765 3333 4444444432211
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003451 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 673 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 673 (819)
.+..++..+...|++++|...|+++.+.. +.+...+..++..|.+.|++++|.+.++++.+.. +.+..++..++.+
T Consensus 145 --~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 145 --RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTL 220 (450)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 12334556788999999999999999864 3478889999999999999999999999998764 5678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHH
Q 003451 674 YSRSENFARAEDVLREILAKGIKPDIISYNTV------------IFAYCRNGRMKEASRIFSEMRDSGLVPD-----VIT 736 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~ 736 (819)
|...|++++|+..|+++.+.. +.+...+..+ +..|.+.|++++|.+.|+++.+. .|+ ...
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~ 297 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRS 297 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHH
Confidence 999999999999999999753 2245555554 88999999999999999999984 444 347
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 737 YNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 737 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+..++.++.+.|++++|+..++++++. .| +..+|..++.+|...|++++|...++++.+++|++...
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 888999999999999999999999984 45 78999999999999999999999999999999998554
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=4.3e-17 Score=183.45 Aligned_cols=306 Identities=11% Similarity=0.091 Sum_probs=198.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHH---------------------------HHHhcCChHH
Q 003451 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGF--IPERDTFNTLIS---------------------------AYSRCGSFDQ 507 (819)
Q Consensus 457 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~---------------------------~~~~~g~~~~ 507 (819)
....+++|...|.+.+|++++++..-.+- ..+....+.++. .+...|.+++
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEE 1067 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHH
Confidence 34566778888999999999988874321 112233333333 3444555556
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 003451 508 AMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYS 587 (819)
Q Consensus 508 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 587 (819)
|..+|++... .....+.++ ...|++++|.++.++. -+..+|..+..++...|++++|+..|.+.
T Consensus 1068 Af~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1068 AFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 6665555321 112222222 1455566666665543 24566777777777777777777777553
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHH
Q 003451 588 GIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTY 667 (819)
Q Consensus 588 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 667 (819)
.+...+..++.++.+.|++++|.++|....+.. ++....+.++.+|++.+++++..... + .++...|
T Consensus 1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 455666667777777777777777777766543 23333345777777777766433332 2 3455566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 003451 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD 747 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 747 (819)
..++..|...|++++|..+|..+ ..|..++.+|++.|++++|.+.+++. .+..+|..+..+|...
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 66777777788888888877774 36777777788888888888877765 2456777777777777
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 003451 748 SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSD 812 (819)
Q Consensus 748 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 812 (819)
|++..|....... ..++..+..++..|.+.|.+++|+.++++++.+++.+ ...+..|.-
T Consensus 1264 ~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH-~gmftELai 1322 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLERAH-MGMFTELAI 1322 (1630)
T ss_pred hHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhH-hHHHHHHHH
Confidence 7777777655532 3356677789999999999999999999999998654 334433333
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=3.1e-16 Score=176.68 Aligned_cols=565 Identities=11% Similarity=0.160 Sum_probs=274.4
Q ss_pred hcHHHHHHhhccCCChHHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 003451 134 ADLLGIVKGLGFHKKTDLALDVFEWFRSCCSKDGNLVLRGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTS 213 (819)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 213 (819)
.++..+++++...|.+.+|+++++.+... +..+.-.....+.++..-.+. +.....++.+..... ....
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~e 1054 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPD 1054 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHH
Confidence 34455555555555566666665555421 011111223333333333333 233333333333211 1223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Q 003451 214 LITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGS 293 (819)
Q Consensus 214 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g 293 (819)
+...+...|.+++|..+|++.. -.....+.++. ..+ ++++|.++.++.. +..+|..+..++...|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~-nldrAiE~Aervn------~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIG-NLDRAYEFAERCN------EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHh-hHHHHHHHHHhcC------CHHHHHHHHHHHHhCC
Confidence 4455555666666666666531 12222222322 333 4566666555441 3455556666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003451 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
++++|...|.+. .|...|..++..+.+.|++++|.+.|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 666666665332 245555556666666666666666665554432 22222223555666665555422221
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC
Q 003451 374 QMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD 453 (819)
Q Consensus 374 ~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 453 (819)
+ .++...|..+...|...|++++|..+|..+ ..|..++..|++.|++++|.+.+++. .+
T Consensus 1191 ---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1191 ---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred ---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 1 224444555556666666666666666653 24556666666666666666666554 24
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003451 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAA 533 (819)
Q Consensus 454 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 533 (819)
..+|..+..+|...|++..|...... +..+...+..++..|.+.|.+++|+.+++...... .-....|+-+...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiL 1323 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 1323 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHH
Confidence 45566666666666665555554332 22244455556666666666666666665554432 1233344444444
Q ss_pred HHhc--CCHHHHHHHHHHHHhCCCC------CCHHHHHHHHHHHHccCCHHHHHHHHHH-------------HHhCCCCC
Q 003451 534 LARG--GMWEQSEKIFAEMKGGRCK------PNELTYSSLLHAYANGREIDQMLALSEE-------------IYSGIIEP 592 (819)
Q Consensus 534 ~~~~--g~~~~A~~~~~~m~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------------~~~~~~~~ 592 (819)
+++. ++..++.++|..-.. ++ -+...|..+.-.|.+.++++.|....-+ .+. ...
T Consensus 1324 yaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~ 1399 (1630)
T 1xi4_A 1324 YSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVA 1399 (1630)
T ss_pred HHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccc
Confidence 4432 233344444433221 11 1334455555556666666655522111 111 122
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003451 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
+..++...+..|. +...++..-+...+...+. +...+..+.+.+++.-+...++..... .+...=..+..
T Consensus 1400 n~elyykai~Fyl--~~~P~~lndLl~~l~~rlD-----~~R~V~l~~~~~~l~lik~yl~~vq~~---n~~~Vneal~e 1469 (1630)
T 1xi4_A 1400 NVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLD-----HTRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNN 1469 (1630)
T ss_pred cHHHHHHHHHHHH--hhChHHHHHHHHHhhhcCC-----hHHHHHHHHHcCChHHhHHHHHHHHHh---cchhhhHHHHH
Confidence 3334444444443 1111122111111111011 122233333444444444444443322 12222234444
Q ss_pred HHHhcCCHHHHHHHH------------HHHHHCCCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 003451 673 MYSRSENFARAEDVL------------REILAKGIKPDIISYNTVI-FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNT 739 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~------------~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 739 (819)
.|...++++.-..-. +++.+. +..-+..++ ..|.+.|+|+.|.+++++.. -|.-
T Consensus 1470 l~ieeed~~~Lr~si~~~~nfd~~~La~~lekh----eLl~frrIAa~ly~~n~~~~~ai~l~k~d~---------l~~d 1536 (1630)
T 1xi4_A 1470 LFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELIEFRRIAAYLFKGNNRWKQSVELCKKDS---------LYKD 1536 (1630)
T ss_pred HhcCccchHHHHHHHhhccCcCHHHHHHHhhhh----hHHHHHHHHHHHHHhcCcHHHHHHHHHhcc---------CHHH
Confidence 455555543222111 111111 222233344 44556699999999887642 3555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHH
Q 003451 740 FVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 740 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
.+....++|+.+.+.+++.-..+. -+...|...+..|+..-+.+-+.+
T Consensus 1537 Am~~a~~S~d~e~~e~ll~~F~~~---~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1537 AMQYASESKDTELAEELLQWFLQE---EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CChhHHHHHHHHHhccCCchHHHH
Confidence 677888999999999999998875 356677778888887777776665
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=1.1e-17 Score=181.81 Aligned_cols=377 Identities=13% Similarity=0.057 Sum_probs=229.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cC
Q 003451 397 AGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGN----RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ----NG 468 (819)
Q Consensus 397 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 468 (819)
.+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.+ +...+..|...|.. .+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 129 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKV 129 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 344444444444444332 23333334444443 444444444444444322 33333344444443 44
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 003451 469 MDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR----CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR----GGMW 540 (819)
Q Consensus 469 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 540 (819)
++++|...|++..+.| +...+..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .++.
T Consensus 130 ~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 130 DKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCH
Confidence 4445555554444433 33444444444444 455666666666655542 45555555555555 5666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----CCCHHH
Q 003451 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK----SDLLMD 612 (819)
Q Consensus 541 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 612 (819)
++|.+.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +......+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 66666666665543 44455555555554 566666666666666543 33444555555555 677777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 003451 613 TERAFLELKKKGFSPDIPTLNAMISIYGRR-----QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE---NFARAE 684 (819)
Q Consensus 613 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~ 684 (819)
|...|++..+.| +...+..+...|... +++++|.+.+++..+.| +...+..+...|...| ++++|+
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 777777777653 556677777777766 78888888888888764 4566777777777755 788899
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHH
Q 003451 685 DVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDV 756 (819)
Q Consensus 685 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 756 (819)
++|++..+.+ +...+..+...|.. .+++++|.++|++..+.| +...+..++..|.. .+++++|..+
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999888863 67788888888888 788999999999988864 56788888888887 7899999999
Q ss_pred HHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 757 VRYMIKQGCK-P-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 757 ~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++++.+.+.. | +......++..+.. +.++|.+..++..+..|+....
T Consensus 426 ~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 426 FDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999886533 2 44455555554433 3455555556655555544333
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=5.5e-19 Score=184.28 Aligned_cols=320 Identities=12% Similarity=0.080 Sum_probs=246.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003451 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA 532 (819)
Q Consensus 453 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 532 (819)
++..+..+...+...|++++|...|+++.+... .+..++..+...+...|++++|...++.+.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 355677777888888888888888888877643 35677777888888888888888888888776433 5677777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC
Q 003451 533 ALARGGMWEQSEKIFAEMKGGRCKP----NELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSD 608 (819)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 608 (819)
.+...|++++|...|+++.+. .| +...+..+...+. ......++..+...|
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 888888888888888887765 34 2222222221110 011233466788889
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003451 609 LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLR 688 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 688 (819)
++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988764 3467888889999999999999999999998864 5677888999999999999999999999
Q ss_pred HHHHCCCCCCHhHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHH
Q 003451 689 EILAKGIKPDIISYN------------TVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVE 752 (819)
Q Consensus 689 ~~~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~ 752 (819)
++.+.. +.+...+. .++..+.+.|++++|.+.++++.+.... +. ..+..++.++...|++++
T Consensus 213 ~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 213 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHH
Confidence 998753 22344333 3367789999999999999999985322 23 235568889999999999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 753 ALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 753 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
|+..++++++. .| +..++..++.+|...|++++|...++++.+.+|++...
T Consensus 291 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 291 AIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 99999999985 45 78899999999999999999999999999999988654
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.87 E-value=3.4e-17 Score=178.06 Aligned_cols=366 Identities=13% Similarity=0.042 Sum_probs=314.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHH
Q 003451 403 AMKVFEEMRSAGCKPNICTFNALIKMHGN----RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQ----NGMDSEVS 474 (819)
Q Consensus 403 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 474 (819)
+...+....+.| +...+..+...|.. .+++++|+..|++..+.+ +...+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345555555544 67777888888887 899999999999998864 67788889999988 99999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 003451 475 GVFKEMKRAGFIPERDTFNTLISAYSR----CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR----GGMWEQSEKI 546 (819)
Q Consensus 475 ~~~~~m~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 546 (819)
+.|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|++.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998875 66778888888888 789999999999999875 67888888888887 7899999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHH
Q 003451 547 FAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK----SDLLMDTERAFL 618 (819)
Q Consensus 547 ~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 618 (819)
|++..+.+ +...+..+...|.. .++.++|+..+++..+.+ +......+...|.. .+++++|...|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998864 67888888888887 899999999999998864 56677778888875 899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 003451 619 ELKKKGFSPDIPTLNAMISIYGR----RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS-----ENFARAEDVLRE 689 (819)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~ 689 (819)
+..+.+ +...+..+...|.. .++.++|++.+++..+.| +...+..+...|... +++++|+..|++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998864 66778888888877 899999999999998864 566778888888887 899999999999
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHH
Q 003451 690 ILAKGIKPDIISYNTVIFAYCRNG---RMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIK 762 (819)
Q Consensus 690 ~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 762 (819)
..+.+ +...+..+...|...| ++++|.++|++..+.| +...+..++..|.. .+++++|+.+++++.+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99864 5678888888888866 7999999999999863 67889999999998 8999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHhhhcCCC
Q 003451 763 QGCKPNQNTYNSIVDGYCK----LNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 763 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~ 801 (819)
.| +...+..++..|.. .++.++|..+++++.+.+|+
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 67888999999998 89999999999999999965
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=4.6e-18 Score=177.26 Aligned_cols=332 Identities=11% Similarity=0.057 Sum_probs=233.3
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003451 418 NICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLIS 497 (819)
Q Consensus 418 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 497 (819)
+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 45678888999999999999999999998764 55688999999999999999999999999988743 36788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 003451 498 AYSRCGSFDQAMSIYKRMLEAGVT--PDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREI 575 (819)
Q Consensus 498 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 575 (819)
.+...|++++|.+.|+.+.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999986430 13344443321100 01122233344455555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 576 DQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFM 655 (819)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 655 (819)
++|+..++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+++.
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554432 3344455555555555566666666555555542 224555666666666666666666666666
Q ss_pred hhCCCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCCHHHHH
Q 003451 656 NDSGFTPSLTTY------------NTLMYMYSRSENFARAEDVLREILAKGIKPDI----ISYNTVIFAYCRNGRMKEAS 719 (819)
Q Consensus 656 ~~~~~~p~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 719 (819)
.+.. +.+...+ ..++..+.+.|++++|...++++.+.... +. ..+..++.++...|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 6542 2222222 23366788999999999999999875322 33 33556788999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 003451 720 RIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCK 781 (819)
Q Consensus 720 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 781 (819)
+.++++.+.. ..+..++..++.++...|++++|...++++++ +.| +..++..+..++..
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHH
Confidence 9999998852 22677899999999999999999999999998 457 56666666665543
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.9e-18 Score=175.49 Aligned_cols=270 Identities=13% Similarity=0.017 Sum_probs=148.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC
Q 003451 528 NAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKS 607 (819)
Q Consensus 528 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 607 (819)
..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++++.. +.+...+..++..+...
T Consensus 26 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 26 VSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 333344444444444444444443321 1222233333344444444444444444444432 22334444444555555
Q ss_pred C-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003451 608 D-LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDV 686 (819)
Q Consensus 608 ~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 686 (819)
| ++++|...|+++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..++..|...|++++|.+.
T Consensus 104 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 5 5555555555555432 1234455566666666666666666666666543 23344555566666666666666666
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003451 687 LREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG--------LVPDVITYNTFVASYAADSLFVEALDVVR 758 (819)
Q Consensus 687 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 758 (819)
++++.+.. +.+...+..++..+...|++++|...++++.+.. ...+..++..++.++...|++++|+..++
T Consensus 182 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66666542 2245666666666666677777776666666521 02223466666667777777777777777
Q ss_pred HHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 759 YMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 759 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
++++. .| +...+..++.+|.+.|++++|.+.++++.+.+|++..
T Consensus 261 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 305 (330)
T 3hym_B 261 QALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305 (330)
T ss_dssp HHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHH
T ss_pred HHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchH
Confidence 76663 23 5566667777777777777777777777777666533
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.82 E-value=3.4e-16 Score=172.04 Aligned_cols=433 Identities=9% Similarity=0.041 Sum_probs=289.0
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003451 337 LREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCK 416 (819)
Q Consensus 337 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 416 (819)
|++..+. .+-+...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|++++|..+|++++...
T Consensus 2 le~al~~-~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEE-NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHH-CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhh-CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 3444443 2347778888887 47788888888888888875 34466678888888888888888888888888763
Q ss_pred CCHHHHHHHHHHH-HccCCHHHHHH----HHHHHhhC-CCC-CCHHHHHHHHHHHHh---------cCChHHHHHHHHHH
Q 003451 417 PNICTFNALIKMH-GNRGNFVEMMK----VFDEINKC-NCK-PDIVTWNTLLAVFGQ---------NGMDSEVSGVFKEM 480 (819)
Q Consensus 417 ~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~m 480 (819)
|+...|..++... ...|+.++|.+ +|+..... |.. .+...|..++..... .|+.+.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666676666433 34566655554 66655432 322 345667666665544 56677777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HhCC
Q 003451 481 KRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEM------KGGR 554 (819)
Q Consensus 481 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m------~~~~ 554 (819)
++.........|..........|. .+...++. .+.++++.|..++.++ .+..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 662111001222221111000010 00011110 1234556666666552 2221
Q ss_pred ---CCCC--------HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc-------CC
Q 003451 555 ---CKPN--------ELTYSSLLHAYANG----REI----DQMLALSEEIYSGIIEPHAVLLKTLILVYSK-------SD 608 (819)
Q Consensus 555 ---~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~ 608 (819)
++|+ ...|...+...... ++. +.+..+|++++... +.+..++..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2333 23444444322221 222 46778888888753 5567788888877765 78
Q ss_pred CHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-H-HHHHHHHHHHHhcCC
Q 003451 609 LLM-------DTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS-L-TTYNTLMYMYSRSEN 679 (819)
Q Consensus 609 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~-~~~~~l~~~~~~~g~ 679 (819)
+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|.++|+++.+. .|+ . ..|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcC
Confidence 877 89999999886322446888999999999999999999999999985 454 3 578889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003451 680 FARAEDVLREILAKGIKPDIISYNTVIFA-YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVR 758 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 758 (819)
+++|.++|++.++.. +.+...|...+.. +...|++++|.++|++.++.. .-+...|..++..+.+.|+.++|..+++
T Consensus 372 ~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 372 IKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 999999999999752 2233334333322 346899999999999998852 2257789999999999999999999999
Q ss_pred HHHHcC-CCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 759 YMIKQG-CKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 759 ~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
++++.+ ..| ...+|...+......|+.+.+..+.+++.+..|+
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999853 223 2458888888888999999999999999999884
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=9.5e-18 Score=172.56 Aligned_cols=292 Identities=8% Similarity=-0.058 Sum_probs=220.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003451 487 PERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLL 566 (819)
Q Consensus 487 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 566 (819)
.+...+..++..+...|++++|.++|+.+.+.... +...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34455666666777777777777777777665433 44455556666677777777777777776642 33456666777
Q ss_pred HHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003451 567 HAYANGR-EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 645 (819)
Q Consensus 567 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 645 (819)
..+...| ++++|...++++++.. +.+...+..++.++...|++++|...++++.+.... +...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 7777777 7777777777777654 344566777778888888888888888888776422 456677788889999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHhHHHHHHHHHHhcCCHHH
Q 003451 646 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKG--------IKPDIISYNTVIFAYCRNGRMKE 717 (819)
Q Consensus 646 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~ 717 (819)
++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. .......+..++.+|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998864 5567888999999999999999999999988631 12336788899999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH-HhcCCHh
Q 003451 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY-CKLNQRY 786 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~ 786 (819)
|.+.++++.+... .+...+..++.++...|++++|...++++++ +.| +...+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999988532 2567889999999999999999999999988 456 678888888888 4666643
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=8.2e-16 Score=168.95 Aligned_cols=218 Identities=11% Similarity=0.009 Sum_probs=155.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC
Q 003451 542 QSEKIFAEMKGGRCKPNELTYSSLLHAYAN-------GREID-------QMLALSEEIYSGIIEPHAVLLKTLILVYSKS 607 (819)
Q Consensus 542 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 607 (819)
.+..+|++.... .+.+...|..++..+.. .|+++ +|..++++.++...+.+..++..++..+.+.
T Consensus 256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 556666666654 23455666666666554 56655 7777777777633345677777777778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 003451 608 DLLMDTERAFLELKKKGFSPDI-PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM-YSRSENFARAED 685 (819)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~ 685 (819)
|++++|..+|+++++.... +. ..|..++..+.+.|++++|.++|++..+.. +.+...|...+.. +...|+.++|..
T Consensus 335 g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHH
Confidence 8888888888888775311 32 477788888888888999999999888753 2233333333322 346899999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 686 VLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD--VITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 686 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+|++.++.. +.+...|..++..+.+.|+.++|..+|++++..+. .|+ ...|..++......|+.+.+..+.+++.+
T Consensus 413 ~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 413 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999888753 23578888899989999999999999999988632 232 34777778777888999999999999887
Q ss_pred c
Q 003451 763 Q 763 (819)
Q Consensus 763 ~ 763 (819)
.
T Consensus 492 ~ 492 (530)
T 2ooe_A 492 A 492 (530)
T ss_dssp H
T ss_pred H
Confidence 3
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=7.7e-18 Score=176.25 Aligned_cols=262 Identities=9% Similarity=0.004 Sum_probs=176.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 003451 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK 606 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 606 (819)
+..+...+.+.|++++|...|+++.+.. +.+..++..+..+|...|++++|+..++++++.. +.+...+..++.++..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444444444332 2233444444444444
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHH
Q 003451 607 SDLLMDTERAFLELKKKGFSPDIPT----------------LNAMISIYGRRQMVAKTNEILHFMNDSGFTP--SLTTYN 668 (819)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~ 668 (819)
.|++++|...++++.+.... +... +..+...+ ..|++++|.+.++++.+.. +. +..++.
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~ 221 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQC 221 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHH
Confidence 44444444444444443211 1111 11233333 7889999999999998864 22 578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003451 669 TLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS 748 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 748 (819)
.++.+|...|++++|+..++++++.. +.+...|..++.++...|++++|...++++.+.. ..+..++..++.++...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999763 3358899999999999999999999999998853 235678999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCC-C-----------HHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 749 LFVEALDVVRYMIKQGCKP-N-----------QNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~~~~p-~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
++++|+..++++++. .| + ..+|..++.+|...|++++|..++++.++
T Consensus 300 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 300 AHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 999999999999874 33 2 68899999999999999999999886654
No 24
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.5e-16 Score=170.86 Aligned_cols=388 Identities=10% Similarity=0.008 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhC-----C-
Q 003451 384 VFTYTTLLSGFEKAGKDESAMKVFEEMRSA--------GCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKC-----N- 449 (819)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~- 449 (819)
...|+.|...+...|+.++|++.|++..+. .......+|+.+...|...|++++|...++++.+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 457888888888888999998888876542 11223567888888888888888888888776532 0
Q ss_pred -CCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCC
Q 003451 450 -CKPDIVTWNTLLAVFGQ--NGMDSEVSGVFKEMKRAGFIPERDTFNTLISA---YSRCGSFDQAMSIYKRMLEAGVTPD 523 (819)
Q Consensus 450 -~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~ 523 (819)
......++..+..++.. .+++++|++.|++..+.... +...+..+... +...++.++|++.+++..+.+.. +
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 01124455555444443 34567777777777665322 34444444333 23445666677777766665433 4
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 003451 524 LSTYNAVLAALAR----GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKT 599 (819)
Q Consensus 524 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 599 (819)
...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|+..++++++.. +.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4555444443333 345666777776665542 3455566666667777777777777777766643 334555555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 003451 600 LILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN 679 (819)
Q Consensus 600 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 679 (819)
++.+|...+... .... ...........+..++|...+++..+.. +.+..++..+...|...|+
T Consensus 287 lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 554443211000 0000 0000000111233677888888887653 3455668889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCH--hHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003451 680 FARAEDVLREILAKGIKPDI--ISYNTVIF-AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDV 756 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 756 (819)
+++|++.|+++++....+.. ..+..+.. .+...|++++|+..|++.++ +.|+..... +....+.++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~---------~~~~~l~~~ 418 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKE---------KMKDKLQKI 418 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHH---------HHHHHHHHH
Confidence 99999999999986433321 22333332 34578899999999999988 455543222 223455666
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 757 VRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 757 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+++.++. .| +..+|..++.+|...|++++|++.++++++.+|.++..
T Consensus 419 ~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 419 AKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHH--CC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 7777764 35 78899999999999999999999999999999887654
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=1.5e-17 Score=173.65 Aligned_cols=262 Identities=11% Similarity=0.003 Sum_probs=175.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 003451 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK 606 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 606 (819)
+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..+|...|++++|+..++++++.. +.+...+..++.+|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4444444444455555555554444432 2234444444445555555555555555544432 2334445555555555
Q ss_pred CCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHH
Q 003451 607 SDLLMDTERAFLELKKKGFS---------PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTP--SLTTYNTLMYMYS 675 (819)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 675 (819)
.|++++|...++++.+.... .....+..+...+...|++++|++.++++.+.. +. +..++..++..|.
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHHH
Confidence 55555555555555442100 012334456778889999999999999998864 23 6788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHH
Q 003451 676 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
..|++++|++.|+++++.. +.+..+|..++.+|...|++++|.+.|+++.+. .| +..++..++.+|...|++++|+
T Consensus 225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999863 336889999999999999999999999999985 34 4778999999999999999999
Q ss_pred HHHHHHHHcCCCC-------------CHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 003451 755 DVVRYMIKQGCKP-------------NQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 755 ~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
..++++++. .| +..+|..++.++...|+.+.|.+..++..
T Consensus 302 ~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 302 SNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp HHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 999999873 22 26789999999999999999988877643
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.76 E-value=5.7e-17 Score=169.61 Aligned_cols=309 Identities=12% Similarity=0.017 Sum_probs=194.3
Q ss_pred HHHccCCHHHHHH-HHHHHhhCCCC-C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003451 428 MHGNRGNFVEMMK-VFDEINKCNCK-P--DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCG 503 (819)
Q Consensus 428 ~~~~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 503 (819)
.+...|++++|.. .+++....... | +...+..+...+...|++++|...|+++.+... .+..++..+...+...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCc
Confidence 3445566666666 55544432110 1 233455555666666666666666666655432 24455555666666666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHH
Q 003451 504 SFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNEL-TYSSLLHAYANGREIDQMLALS 582 (819)
Q Consensus 504 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 582 (819)
++++|.+.|+++.+.... +..++..+...+...|++++|...++++.... |+.. .+..+... ...
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~---- 178 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AGG---- 178 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-------------------
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hhh----
Confidence 666666666665554322 45555555566666666666666666655432 2111 11100000 000
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC
Q 003451 583 EEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT 661 (819)
Q Consensus 583 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 661 (819)
.........+...+ ..|++++|...++++.+..... +..++..++..|...|++++|++.++++.+.. +
T Consensus 179 --------~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 248 (368)
T 1fch_A 179 --------AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P 248 (368)
T ss_dssp ---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred --------hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 00000111233333 7788999999999988764322 57888999999999999999999999998763 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---------
Q 003451 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--------- 732 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--------- 732 (819)
.+..++..++.++...|++++|+..++++++.. +.+...+..++.+|.+.|++++|...|+++.+.....
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 567889999999999999999999999998763 3368889999999999999999999999998732111
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 733 -DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 733 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
...+|..++.++...|++++|..++++.++
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 157899999999999999999988876543
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=2e-16 Score=160.20 Aligned_cols=239 Identities=11% Similarity=0.087 Sum_probs=64.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 003451 220 SNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAA 299 (819)
Q Consensus 220 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 299 (819)
+.|+.++|.++++++. +..+|..++.++.+.| ++++|++.|.+. +|..+|..++.++...|++++|.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g-~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKG-MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcC-CHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3344555555555441 1224555555555555 455555555331 24445555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003451 300 GVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIG 379 (819)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 379 (819)
.+++...+. .++..+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 544443332 2334455555555555555555555553 134445555555555555555555555544
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 003451 380 ITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNT 459 (819)
Q Consensus 380 ~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 459 (819)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|+..|+++.|......+ ...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 13555555555555555555555555 14555555555555555555554333221 122222334
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003451 460 LLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSR 501 (819)
Q Consensus 460 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 501 (819)
++..|.+.|++++|..+++...... +-....|+-+...|++
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 5555555555555555555554432 2234445555444444
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=3.6e-16 Score=155.96 Aligned_cols=255 Identities=15% Similarity=0.106 Sum_probs=168.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHH
Q 003451 534 LARGGMWEQSEKIFAEMKGGRCKPNE--LTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLM 611 (819)
Q Consensus 534 ~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 611 (819)
....|++..|+..++..... .|+. .....+..+|...|+++.|+..++. ..+++...+..++..+...++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 33456666666666554432 2322 2334455666666666666654433 12445556666667777777777
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003451 612 DTERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREI 690 (819)
Q Consensus 612 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 690 (819)
+|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7777777776654333 455566666777777888888777765 356677777777888888888888888887
Q ss_pred HHCCCCCCHhHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003451 691 LAKGIKPDIISY---NTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 691 ~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 767 (819)
.+.. |+.... ..++..+...|++++|..+|+++.+. ...+...++.++.++.+.|++++|+..++++++. .|
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p 231 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DS 231 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Confidence 7653 442211 12233344457788888888888775 2346667777888888888888888888888774 45
Q ss_pred -CHHHHHHHHHHHHhcCCHhH-HHHHHHHhhhcCCCCCHH
Q 003451 768 -NQNTYNSIVDGYCKLNQRYE-AITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 768 -~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~ 805 (819)
+..++..++..+...|+.++ +.++++++.+.+|+++.+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 67777788888888888765 467778888888877655
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.75 E-value=5.9e-17 Score=169.23 Aligned_cols=267 Identities=9% Similarity=-0.052 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003451 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 569 (819)
..+..+...+.+.|++++|.++|+.+.+.... +...+..+...+...|++++|+..|+++.+.. +.+..++..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34666666777777777777777777665433 56677777777777777777777777776542 33466677777777
Q ss_pred HccCCHHHHHHHHHHHHhCCCC---------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 003451 570 ANGREIDQMLALSEEIYSGIIE---------PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFS-PDIPTLNAMISIY 639 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 639 (819)
...|++++|+..++++++.... .....+..++..+...|++++|...++++.+.... .+..++..++..|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 7777777777777777653210 01223345578889999999999999999886432 1688899999999
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 003451 640 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEAS 719 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 719 (819)
...|++++|++.++++.+.. +.+..++..++.+|...|++++|+..|+++++.. +.+..+|..++.+|.+.|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998864 5578899999999999999999999999999863 335889999999999999999999
Q ss_pred HHHHHHHHCCCC---C--------CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 720 RIFSEMRDSGLV---P--------DVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 720 ~~~~~~~~~g~~---p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
..|+++.+.... + +...|..++.++...|+.+.|..+.++.
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999999873111 0 2468899999999999999888776653
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=3.1e-16 Score=160.93 Aligned_cols=283 Identities=12% Similarity=0.022 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003451 490 DTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAY 569 (819)
Q Consensus 490 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 569 (819)
..+..+...+...|++++|..+|+++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34566677777788888888888887775433 66777777777778888888888887777652 34566666777777
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhcCChHH
Q 003451 570 ANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAM-IS-IYGRRQMVAK 647 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~ 647 (819)
...|++++|...++++.+.... +...+..+... .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 7777777777777777664321 11111111000 0111111122 22 3667788999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 648 TNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 648 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
|.+.++++.+.. +.+...+..++..|...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+
T Consensus 157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999988764 4577889999999999999999999999998763 33578899999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 003451 728 SGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-----------NQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 728 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
.. ..+..++..++.++...|++++|...++++++..... +..+|..++.++.+.|++++|..++++++
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 53 2357788999999999999999999999998743121 36788899999999999999999998876
Q ss_pred hcCC
Q 003451 797 KLDP 800 (819)
Q Consensus 797 ~~~p 800 (819)
+..|
T Consensus 314 ~~~~ 317 (327)
T 3cv0_A 314 EPFA 317 (327)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 6533
No 31
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=8.1e-16 Score=155.71 Aligned_cols=281 Identities=13% Similarity=0.179 Sum_probs=112.6
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003451 326 KCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMK 405 (819)
Q Consensus 326 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~ 405 (819)
+.|++++|.++++++. +..+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6677888888888872 2347888888888888888888888653 366688888888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003451 406 VFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGF 485 (819)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 485 (819)
.++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 77766664 3456778888888888888888877764 366678888888888888888888888865
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 003451 486 IPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSL 565 (819)
Q Consensus 486 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 565 (819)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 36788888888888888888888877 267888888888888888888865554322 233334457
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHH
Q 003451 566 LHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKS--DLLMDTERAFLELKKKGFSP------DIPTLNAMIS 637 (819)
Q Consensus 566 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~ 637 (819)
+..|.+.|.+++|+.+++..+... +.....+..+..+|++- +++.+..+.|..-+ .+++ +...|..++.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHH
Confidence 777888888888888888777654 55566666666666554 23334443333111 0000 2334666666
Q ss_pred HHHhcCChHHHHH
Q 003451 638 IYGRRQMVAKTNE 650 (819)
Q Consensus 638 ~~~~~~~~~~A~~ 650 (819)
.|.+.++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 6666677776655
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.3e-15 Score=151.92 Aligned_cols=277 Identities=13% Similarity=0.070 Sum_probs=203.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 003451 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREID 576 (819)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 576 (819)
+-....|++..|+..++................+..+|...|++++|+..++.. .+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 344566888888887776544321111234455677888888888888766441 3556667777788888888888
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 577 QMLALSEEIYSGII-EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFM 655 (819)
Q Consensus 577 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 655 (819)
+|++.+++++..+. +.+...+..++.++...|++++|...+++ +.+...+..++..|.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888877653 44566777778888888999999888876 357788888899999999999999999999
Q ss_pred hhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003451 656 NDSGFTPSLTTY---NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 732 (819)
Q Consensus 656 ~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 732 (819)
.+.. |+.... ..++..+...|++++|..+|+++++. .+.+...|+.++.++.+.|++++|.+.++++++... -
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 8763 543211 22334445568999999999999986 345788999999999999999999999999988532 2
Q ss_pred CHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHH
Q 003451 733 DVITYNTFVASYAADSLFVE-ALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFV 792 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 792 (819)
+..++..++..+...|+.++ +.++++++++ +.|+... +.+...+.+.++++..-|
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~---~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF---IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH---HHHHHHHHHHHHHHHHHc
Confidence 66789999999999999876 5688999988 4675432 233455666666666544
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=4.4e-15 Score=161.08 Aligned_cols=381 Identities=8% Similarity=-0.072 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-C-
Q 003451 351 TYNSLISAYARDGLLEEAMELKTQMVEI--------GITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSA-----G-C- 415 (819)
Q Consensus 351 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~- 415 (819)
.||.|...+...|++++|++.|++..+. .-.....+|..+...|...|++++|...++++.+. + .
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 3444444444444444444444443321 01112234455555555555555555555444321 0 0
Q ss_pred CCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCCHH
Q 003451 416 KPNICTFNALIKMHGN--RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAV---FGQNGMDSEVSGVFKEMKRAGFIPERD 490 (819)
Q Consensus 416 ~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~ 490 (819)
.....++..+..++.+ .+++++|++.|++..+.. +.+...+..+..+ +...++.++|++.+++..+.... +..
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~ 210 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQY 210 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chH
Confidence 0123334333333332 345666666666665542 2234444443333 33456666677777666655322 444
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 003451 491 TFNTLISAYSR----CGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLL 566 (819)
Q Consensus 491 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 566 (819)
.+..+...+.. .|++++|.+++++....... +...+..+...|...|++++|+..+++..+.. +.+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 45444444433 35667777777777765433 66777777778888888888888888777642 33455555555
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 003451 567 HAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVA 646 (819)
Q Consensus 567 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 646 (819)
.+|...+.... ... .. .........+..+.|...+++..+.. +.+...+..+...|...|+++
T Consensus 289 ~~y~~~~~~~~---------~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 289 CCYRAKVFQVM---------NLR-EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhh---------hHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHH
Confidence 55432111100 000 00 00000111123566777777777653 224556778888899999999
Q ss_pred HHHHHHHHHhhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 003451 647 KTNEILHFMNDSGFTPSLT--TYNTLMY-MYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFS 723 (819)
Q Consensus 647 ~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 723 (819)
+|++.|++..+....+... .+..+.. .....|++++|+..|++.++. .|+..... +..+.+.++++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~ 420 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHH
Confidence 9999999988764222211 2233332 345778999999999999885 44432222 12344556666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003451 724 EMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 724 ~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 764 (819)
+.++.+ ..+..+|..++.+|...|++++|++.++++++.|
T Consensus 421 ~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 421 MRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666542 2356689999999999999999999999999854
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=9.3e-18 Score=183.09 Aligned_cols=117 Identities=18% Similarity=0.164 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 003451 279 SYTFNTLISCCRRGSLHEEAAGVFEEMKL---AGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSL 355 (819)
Q Consensus 279 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 355 (819)
..||++||++||+.|++++|.++|++|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655442 355666666666666666666666666666666666666666666666
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003451 356 ISAYARDGL-LEEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (819)
Q Consensus 356 i~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~ 395 (819)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 666666665 3556666666666666666666666554443
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=1.5e-15 Score=155.79 Aligned_cols=282 Identities=8% Similarity=-0.072 Sum_probs=218.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003451 453 DIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLA 532 (819)
Q Consensus 453 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 532 (819)
+...+..+...+...|++++|..+|+++.+... .+...+..+...+...|++++|.+.++++.+.... +...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence 344567788899999999999999999988753 37788899999999999999999999999987543 7888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHhcCCCH
Q 003451 533 ALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLIL--VYSKSDLL 610 (819)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 610 (819)
.+...|++++|.+.++++.+.. +.+...+..+...+ ++......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccH
Confidence 9999999999999999998763 11222222221110 11111112212 25667788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003451 611 MDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREI 690 (819)
Q Consensus 611 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 690 (819)
++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++
T Consensus 155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888764 2367888889999999999999999999988764 456788999999999999999999999999
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003451 691 LAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-----------DVITYNTFVASYAADSLFVEALDVVRY 759 (819)
Q Consensus 691 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 759 (819)
++.. +.+...+..++.+|...|++++|.+.++++.+..... +..++..++.++...|++++|..++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8763 3367889999999999999999999999998742221 356888999999999999999998876
Q ss_pred HHH
Q 003451 760 MIK 762 (819)
Q Consensus 760 ~~~ 762 (819)
+++
T Consensus 312 ~l~ 314 (327)
T 3cv0_A 312 NVE 314 (327)
T ss_dssp CSH
T ss_pred HHH
Confidence 543
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=180.67 Aligned_cols=153 Identities=18% Similarity=0.259 Sum_probs=125.6
Q ss_pred CCCHHhHHHHHHHHHhCCChHHHHHHHHHHHH---CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003451 311 SPDKVTYNALLDVYGKCRRPKEAMQVLREMKI---NGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTY 387 (819)
Q Consensus 311 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 387 (819)
..-..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33456899999999999999999999988764 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC------HHHHHHH
Q 003451 388 TTLLSGFEKAGK-DESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD------IVTWNTL 460 (819)
Q Consensus 388 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l 460 (819)
+++|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++.++++ .-+..|+ +.+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999998 478999999999999999999999998765443 333334333 2223332 3344455
Q ss_pred HHHHHhcC
Q 003451 461 LAVFGQNG 468 (819)
Q Consensus 461 ~~~~~~~g 468 (819)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 56666554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.66 E-value=1e-14 Score=138.75 Aligned_cols=198 Identities=13% Similarity=-0.029 Sum_probs=144.6
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003451 592 PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM 671 (819)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 671 (819)
++...+..++..+...|++++|...|++.++.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 344455566666666777777777777766653 2356667777777777777777777777777653 44556677777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003451 672 YMYSRS-----------ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 740 (819)
Q Consensus 672 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 740 (819)
.++... |++++|+..+++.++.. +-+...|..+..+|...|++++|+..|+++++.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 99999999999999863 2257888999999999999999999999999876 678899999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 003451 741 VASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
+.++...|++++|+..++++++. .| +...+..++..+...|++++|+..++++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999984 56 67888999999999999999999998764
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=1.4e-13 Score=136.70 Aligned_cols=231 Identities=13% Similarity=0.019 Sum_probs=181.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003451 558 NELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSK----SDLLMDTERAFLELKKKGFSPDIPTLN 633 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 633 (819)
+..++..+...|...+++++|+..+++..+ +.+...+..++..|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 344455555556666666666666666665 2334555566666666 777777777777777764 677778
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 003451 634 AMISIYGR----RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIKPDIISYNTV 705 (819)
Q Consensus 634 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 705 (819)
.+...|.. .+++++|++.+++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 888999999998888864 67788888888888 899999999999998864 56778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003451 706 IFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 777 (819)
Q Consensus 706 ~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 777 (819)
...|.. .+++++|.+.|++..+.+ +...+..++..|.. .+++++|+.+++++.+.+ +...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 899999999999998853 56788889999999 999999999999999854 3677888999
Q ss_pred HHHh----cCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 778 GYCK----LNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 778 ~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
.|.. .|++++|.++++++.+.+|++....
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998 8999999999999999988754433
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.9e-14 Score=141.69 Aligned_cols=222 Identities=12% Similarity=0.067 Sum_probs=157.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--CCC----HHHHHHHH
Q 003451 563 SSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF--SPD----IPTLNAMI 636 (819)
Q Consensus 563 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~ 636 (819)
..+...+...|++++|+..++++++.. .+...+..++.++...|++++|...++++.+... .++ ...+..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333334444444444444444444333 3334444444445555555555555554443211 111 46677778
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHH
Q 003451 637 SIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMK 716 (819)
Q Consensus 637 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 716 (819)
..+...|++++|.+.++++.+. .|+. ..+...|++++|...++++.... +.+...+..++..+...|+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHH
Confidence 8888888888888888888775 3443 34666788999999999988753 224678888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 003451 717 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 717 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
+|.+.++++.+.. ..+..++..++.++...|++++|+..++++++. .| +...|..++.+|.+.|++++|...++++
T Consensus 157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999998853 235778889999999999999999999999985 45 6788999999999999999999999999
Q ss_pred hhcC
Q 003451 796 SKLD 799 (819)
Q Consensus 796 ~~~~ 799 (819)
.+.+
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9998
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=1.5e-14 Score=154.31 Aligned_cols=346 Identities=12% Similarity=0.055 Sum_probs=150.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 003451 355 LISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKD---ESAMKVFEEMRSAGCKPNICTFNALIKMHGN 431 (819)
Q Consensus 355 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 431 (819)
+...+.+.|++++|+++|++..+.| +...+..+...|...|+. ++|...|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666677777777777766655 222344444555555665 6666666666543 33444445443333
Q ss_pred cC-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003451 432 RG-----NFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDS---EVSGVFKEMKRAGFIPERDTFNTLISAYSRCG 503 (819)
Q Consensus 432 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 503 (819)
.+ ++++|+..|++..+.+. ++ .+..|...|...+..+ ++.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 33 55666666666655442 11 3444444444433322 2233333333222 1223333444444444
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC---CHHHHHH
Q 003451 504 SFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR---EIDQMLA 580 (819)
Q Consensus 504 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~ 580 (819)
.++++.. ++..+++..... .|+ .+..+...|...| +.++|+.
T Consensus 156 ~~~~~~~-------------------------------~a~~~~~~a~~~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 156 TYDQHLD-------------------------------DVERICKAALNT--TDI--CYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp CGGGGHH-------------------------------HHHHHHHHHTTT--CTT--HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcccCHH-------------------------------HHHHHHHHHHcC--CHH--HHHHHHHHHHHcCCcccHHHHHH
Confidence 3222222 222222222211 111 3344444444444 4444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChHHHHHHHH
Q 003451 581 LSEEIYSGIIEPHAVLLKTLILVYSKS----DLLMDTERAFLELKKKGFSPDIPTLNAMISI-Y--GRRQMVAKTNEILH 653 (819)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~ 653 (819)
.+++..+.+ +++...+..+..+|... +++++|...|++.. .| +...+..+... + ...+++++|.+.|+
T Consensus 201 ~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 444444443 23333333344444332 45555555555544 22 33444444444 2 34556666666666
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHH
Q 003451 654 FMNDSGFTPSLTTYNTLMYMYSRSE-----NFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSE 724 (819)
Q Consensus 654 ~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 724 (819)
+..+.| +...+..+...|. .| ++++|.++|++.. .| +...+..|...|.. ..++++|.++|++
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 665544 4445555555554 33 6666666666655 22 44555555555544 2256666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 003451 725 MRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 725 ~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 764 (819)
..+.|. ......++..|.. ..+.++|..+++++.+.|
T Consensus 348 Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 348 AARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 665442 2244455555443 335666666666666654
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.64 E-value=3.9e-14 Score=151.16 Aligned_cols=380 Identities=9% Similarity=-0.003 Sum_probs=211.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003451 319 ALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLL---EEAMELKTQMVEIGITPDVFTYTTLLSGFE 395 (819)
Q Consensus 319 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~ 395 (819)
.+...+.+.|++++|.++|++..+.| +..++..|...|...|+. ++|++.|++..+. +...+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 36677889999999999999998875 455667777888888888 9999999999865 4555666666555
Q ss_pred hcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003451 396 KAG-----KDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFV---EMMKVFDEINKCNCKPDIVTWNTLLAVFGQN 467 (819)
Q Consensus 396 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 467 (819)
..| +.++|...|++..+.|.. ..+..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 555 789999999999987643 36777777777665543 3455555554433 345666777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCH
Q 003451 468 GMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCG---SFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARG----GMW 540 (819)
Q Consensus 468 g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 540 (819)
+.++++......+.+.-...+...+..+...|...| +.++|++.|+...+.|.. +...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence 765555444333332212223336666667777777 677777777777666543 444444455555433 456
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--hcCCCHHHHHHHHH
Q 003451 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVY--SKSDLLMDTERAFL 618 (819)
Q Consensus 541 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~ 618 (819)
++|+..|++.. . -+...+..+...| + ...+++++|...|+
T Consensus 234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~----------------------------------~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 234 KTAQALLEKIA-P---GYPASWVSLAQLL----------------------------------YDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHHHHG-G---GSTHHHHHHHHHH----------------------------------HHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHc-C---CCHHHHHHHHHHH----------------------------------HhCCCCCCHHHHHHHHH
Confidence 66666666554 2 2233333333331 2 23455555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 003451 619 ELKKKGFSPDIPTLNAMISIYGRRQ-----MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLRE 689 (819)
Q Consensus 619 ~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 689 (819)
+..+.| +...+..|...|. .| ++++|.+.|++.. . -+...+..+...|.. ..++++|..+|++
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 555543 5555556665555 33 6777777777766 3 355566666666655 3478888888888
Q ss_pred HHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 690 ILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 690 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..+.| +......|..+|.. ..+.++|..+|+...+.|.. +.......+......++..+|..+.++..+
T Consensus 348 Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 348 AARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 77765 34455556666653 34678888888887776532 111111111111223345566666665543
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=7.3e-14 Score=137.52 Aligned_cols=223 Identities=10% Similarity=0.005 Sum_probs=150.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 003451 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIE--PH----AVLLKTL 600 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l 600 (819)
+..+...+...|++++|+..|+++.+.. .+...+..+..+|...|++++|+..++++++.... ++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444444444444444444444433 33444444444444455555555544444432110 01 3555666
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 003451 601 ILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENF 680 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 680 (819)
+.++...|++++|...|+++.+.. |+. ..+...|++++|.+.++.+.... +.+...+..++..+...|++
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCH
Confidence 667777777777777777776642 332 34555677888888888888753 33456788888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 681 ARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 681 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
++|...++++++.. +.+...|..++.+|...|++++|.+.++++.+.. ..+...+..++.++...|++++|...++++
T Consensus 156 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 156 PNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999998763 3367888899999999999999999999998853 225678889999999999999999999998
Q ss_pred HHc
Q 003451 761 IKQ 763 (819)
Q Consensus 761 ~~~ 763 (819)
++.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 873
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=7.1e-14 Score=138.93 Aligned_cols=236 Identities=13% Similarity=0.047 Sum_probs=161.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc
Q 003451 565 LLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSP--DIPTLNAMISIYGRR 642 (819)
Q Consensus 565 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 642 (819)
....+...|++++|+..++++++.. +.+...+..++.++...|++++|...++++.+....+ ....+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3444555555555555555555443 2233344555555666666666666666665522111 233467777777888
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003451 643 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIF 722 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 722 (819)
|++++|++.+++..+.. +.+..++..++.+|...|++++|++.++++++.. +.+...|..+...+...+++++|.+.+
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888877653 4455778888888888888888888888887752 335677777773444456889999998
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhcCCHhHHHHH
Q 003451 723 SEMRDSGLVP-DVITYNTFVASYAADSL---FVEALDVVRYMIKQG-CKPN------QNTYNSIVDGYCKLNQRYEAITF 791 (819)
Q Consensus 723 ~~~~~~g~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~ 791 (819)
+++.+. .| +...+..++.++...|+ +++|+..++++++.. -.|+ ..+|..++..|...|++++|...
T Consensus 166 ~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888874 33 35677778888888887 888888888887631 1133 25778899999999999999999
Q ss_pred HHHhhhcCCCCCHH
Q 003451 792 VNNLSKLDPHVTKE 805 (819)
Q Consensus 792 ~~~~~~~~p~~~~~ 805 (819)
++++++++|+++..
T Consensus 244 ~~~al~~~p~~~~a 257 (272)
T 3u4t_A 244 WKNILALDPTNKKA 257 (272)
T ss_dssp HHHHHHHCTTCHHH
T ss_pred HHHHHhcCccHHHH
Confidence 99999999987544
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=1.1e-13 Score=142.67 Aligned_cols=245 Identities=9% Similarity=0.079 Sum_probs=169.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003451 561 TYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDL-LMDTERAFLELKKKGFSPDIPTLNAMISIY 639 (819)
Q Consensus 561 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 639 (819)
.|..+...+...|++++|+..+++++... +.+...+..++.++...|+ +++|+..|+++++... .+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 34444455555556666666666655543 3445556666666666665 7777777777666542 2667777788888
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-cCCHHHH
Q 003451 640 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR-NGRMKEA 718 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A 718 (819)
...|++++|+..++++++.. +-+...|..+..++...|++++|+..++++++.+. -+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 88888888888888888764 45667788888888888888888888888887642 257788888888887 5555777
Q ss_pred -----HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC------
Q 003451 719 -----SRIFSEMRDSGLVP-DVITYNTFVASYAADS--LFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLN------ 783 (819)
Q Consensus 719 -----~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g------ 783 (819)
++.++++++. .| +...|..++.++...| ++++|++.++++ + ..| +...+..++++|.+.|
T Consensus 255 ~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccc
Confidence 4778887773 34 4557778888888777 578888888877 4 345 5677778888888764
Q ss_pred ---CHhHHHHHHHHh-hhcCCCCCHHHHHHHHHHHH
Q 003451 784 ---QRYEAITFVNNL-SKLDPHVTKELECKLSDRIA 815 (819)
Q Consensus 784 ---~~~~A~~~~~~~-~~~~p~~~~~~~~~l~~~l~ 815 (819)
.+++|+++++++ .+.+|... ..|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~-~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRK-EYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhH-HHHHHHHHHHH
Confidence 257888888888 78888663 44444554443
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=4.5e-13 Score=131.30 Aligned_cols=208 Identities=11% Similarity=0.022 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003451 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 673 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 673 (819)
...+..++..+...|++++|...|+++.+.. +.+...+..++..|...|++++|.+.++++.+.. +.+...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4556677778888888888888888888764 3367788888999999999999999999988764 4577888899999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003451 674 YSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE 752 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 752 (819)
|...|++++|.++++++.+.+..| +...+..++.++...|++++|.+.++++.+.. ..+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998732334 46788888999999999999999999998853 2257788899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 753 ALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 753 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
|...++++++.. ..+...+..++..+.+.|++++|..+++++.+..|++...
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999998742 2367788899999999999999999999999999987543
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=5.4e-11 Score=130.81 Aligned_cols=448 Identities=9% Similarity=0.038 Sum_probs=292.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 003451 331 KEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGK---DESAMKVF 407 (819)
Q Consensus 331 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~---~~~A~~~~ 407 (819)
.+....|++.+.. .+-|..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|+ .+.+..+|
T Consensus 49 ~d~i~~lE~~l~~-np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEE-QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3444455555554 3458999999999999999999999999999987 55567778888888788888 99999999
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHHhh-CCC-CC-CHHHHHHHHHHHHh---------
Q 003451 408 EEMRSAG-CKPNICTFNALIKMHGNRGNF--------VEMMKVFDEINK-CNC-KP-DIVTWNTLLAVFGQ--------- 466 (819)
Q Consensus 408 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~--------- 466 (819)
+..+... ..|+...|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9988763 136777888877766555443 334467776554 344 34 35677777765442
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003451 467 NGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKI 546 (819)
Q Consensus 467 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 546 (819)
.++.+.+..+|+..+......-..+|..... +.+.-+...+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHH---------------------hhHHHHHHHHH
Confidence 3345667777777664311111122222111 1111000011111111 01123334444
Q ss_pred HHHHHh------CCCC-----------C-----C---HHHHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCCCH
Q 003451 547 FAEMKG------GRCK-----------P-----N---ELTYSSLLHAYANGR-------EIDQMLALSEEIYSGIIEPHA 594 (819)
Q Consensus 547 ~~~m~~------~~~~-----------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~ 594 (819)
+.++.. ..++ | + ...|...+.--...+ ..+....+|++++... +...
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCH
Confidence 433211 0000 1 0 123444443222221 1234556788887753 5678
Q ss_pred HHHHHHHHHHhcCCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC---------CCCC-
Q 003451 595 VLLKTLILVYSKSDLLMDTE-RAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSG---------FTPS- 663 (819)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~p~- 663 (819)
.++...+..+...|+.++|. .+|++.... ++.+...+...+....+.|++++|.++|+.+.+.. -.|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 88888888888889988996 999998875 34466677788888889999999999999988631 0132
Q ss_pred -----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC
Q 003451 664 -----------LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN-GRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 664 -----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~ 731 (819)
..+|...+....+.|+.+.|..+|+++++.-.......|...+..-.+. ++.+.|.++|+..++. +.
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p 501 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FA 501 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HT
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CC
Confidence 2367788888888999999999999998751111234444444333444 4589999999999986 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 732 PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 732 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
-+...|..++......|+.+.|..+|+++++....+ ...+|...+..-.+.|+.+.+.++.+++.+..|+++..
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 466677788888888999999999999999853222 34788888888889999999999999999999987644
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.3e-13 Score=134.44 Aligned_cols=209 Identities=12% Similarity=0.094 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 003451 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM 673 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 673 (819)
...+..++..+...|++++|...|+++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..++..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 4455666777778888888888888887753 3367788888888999999999999999888764 4577888889999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003451 674 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 753 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 753 (819)
|...|++++|.++++++.+.. +.+...+..++..+...|++++|.+.++++.+.. ..+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998764 3467888899999999999999999999998853 23677888999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHH
Q 003451 754 LDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELE 807 (819)
Q Consensus 754 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 807 (819)
+..++++++.. ..+..++..++.+|...|++++|...++++.+.+|++....+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 231 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALH 231 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHH
Confidence 99999998852 336888999999999999999999999999999998866543
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=1.7e-13 Score=130.25 Aligned_cols=198 Identities=14% Similarity=0.002 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003451 558 NELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMIS 637 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 637 (819)
+...+..+...+...|++++|+..+++.++.. +.+...+..++.++...|++++|...+++.++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34445555555555566666666665555543 3445555556666666666666666666666543 224566666666
Q ss_pred HHHhc-----------CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003451 638 IYGRR-----------QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 706 (819)
Q Consensus 638 ~~~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 706 (819)
.+... |++++|+..+++..+.. +.+...+..+..++...|++++|+..|+++++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 66666 88888888888888753 4456778888888888999999999999888775 5788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
.+|...|++++|+..|+++.+... .+...+..++.++...|++++|+..+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888899999999999998887422 255678888888888899999988887764
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=4.9e-12 Score=125.50 Aligned_cols=224 Identities=13% Similarity=-0.005 Sum_probs=164.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 003451 523 DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN----GREIDQMLALSEEIYSGIIEPHAVLLK 598 (819)
Q Consensus 523 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 598 (819)
+...+..+...+...|++++|+..|++..+. -+...+..+...|.. .+++++|+..+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555556666666666666665552 234455555555665 666666666666666543 455566
Q ss_pred HHHHHHhc----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 003451 599 TLILVYSK----SDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGR----RQMVAKTNEILHFMNDSGFTPSLTTYNTL 670 (819)
Q Consensus 599 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 670 (819)
.++..|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 777777777777777654 66777888888887 888888888888888764 56677778
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003451 671 MYMYSR----SENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 671 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887 889999999999988763 56778888888888 899999999999988853 3667888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcC
Q 003451 743 SYAA----DSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 743 ~~~~----~g~~~~A~~~~~~~~~~~ 764 (819)
.|.. .+++++|+++++++.+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888 889999999999998854
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.4e-12 Score=125.23 Aligned_cols=210 Identities=10% Similarity=-0.008 Sum_probs=170.8
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003451 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566677777888888888888888877754 3357788888888999999999999999888764 456778888999
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 003451 673 MYSRS-ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLF 750 (819)
Q Consensus 673 ~~~~~-g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 750 (819)
.+... |++++|...++++++.+..|+ ...+..++.++...|++++|...++++.+.. ..+...+..++..+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999987322333 6788888999999999999999999998853 22577888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 751 VEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 751 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++|..+++++++.....+...+..++..+...|+.++|..+++.+.+..|++...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999885321467777788888899999999999999999998887544
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.56 E-value=5.9e-13 Score=132.19 Aligned_cols=249 Identities=9% Similarity=0.049 Sum_probs=172.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHH
Q 003451 527 YNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSGII--EPHAVLLKTLILVY 604 (819)
Q Consensus 527 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~ 604 (819)
+......+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|+..++++++... ......+..++.++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344455556666666666666665542 22333555556666666666666666666665221 11233466677777
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 003451 605 SKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAE 684 (819)
Q Consensus 605 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 684 (819)
...|++++|...|++..+... .+...+..+...|...|++++|++.+++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888887776542 356788889999999999999999999988763 556677777773444556999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCChHHHH
Q 003451 685 DVLREILAKGIKPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSG-LVPD------VITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 685 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A~ 754 (819)
+.|+++++.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..++..|...|++++|+
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999863 2347788888888888888 888999999988731 1233 257888999999999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHh
Q 003451 755 DVVRYMIKQGCKP-NQNTYNSIVDGYCK 781 (819)
Q Consensus 755 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 781 (819)
..++++++. .| +...+..+......
T Consensus 242 ~~~~~al~~--~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 242 AAWKNILAL--DPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHC-----
T ss_pred HHHHHHHhc--CccHHHHHHHhhhhhcc
Confidence 999999984 56 56666665554433
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=7.3e-13 Score=136.43 Aligned_cols=249 Identities=8% Similarity=0.015 Sum_probs=186.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003451 524 LSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGRE-IDQMLALSEEIYSGIIEPHAVLLKTLIL 602 (819)
Q Consensus 524 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 602 (819)
...|..+...+.+.|++++|+..+++++... +-+...|..+..++...|+ +++|+..++++++.. +.+...+..++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3455666666777777777777777776643 3455667777777777775 777777777777654 456677777777
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHH
Q 003451 603 VYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR-SENFA 681 (819)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~ 681 (819)
++...|++++|+..|+++++... .+...|..+..++.+.|++++|++.++++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 88888888888888888887643 367888888888889999999999999988864 4567788888888888 55546
Q ss_pred HH-----HHHHHHHHHCCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------
Q 003451 682 RA-----EDVLREILAKGIKPDIISYNTVIFAYCRNG--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS------ 748 (819)
Q Consensus 682 ~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g------ 748 (819)
+| ++.+++++... +-+...|+.+...+...| ++++|.+.+.++ +. -..+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 76 58888888753 225788888888888888 689999999887 42 2335668888999988864
Q ss_pred ---ChHHHHHHHHHH-HHcCCCC-CHHHHHHHHHHHHh
Q 003451 749 ---LFVEALDVVRYM-IKQGCKP-NQNTYNSIVDGYCK 781 (819)
Q Consensus 749 ---~~~~A~~~~~~~-~~~~~~p-~~~~~~~l~~~~~~ 781 (819)
.+++|+++++++ ++ +.| ....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 358999999999 66 567 56677777766653
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=3.8e-13 Score=133.82 Aligned_cols=247 Identities=8% Similarity=-0.080 Sum_probs=132.1
Q ss_pred hcCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHH
Q 003451 536 RGGMWEQSEKIFAEMKGGRC---KPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMD 612 (819)
Q Consensus 536 ~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 612 (819)
..|++++|+..|+++.+... +.+..++..+...+...|++++|+..++++++.. +.+...+..++.++...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45667777777777765421 1123455566666666677777777666666543 3345566666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 613 TERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILA 692 (819)
Q Consensus 613 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 692 (819)
|...|+++.+... .+...+..++..|...|++++|.+.++++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 6666666665431 244556666666666666666666666666542 3333333333344555666666666655554
Q ss_pred CCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003451 693 KGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV--P-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 693 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 769 (819)
.. +++...+ .++..+...++.++|.+.++++.+.... | +...+..++..+...|++++|...++++++. .|+.
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 32 2222222 2444555555566666666655442110 0 1245556666666666666666666666652 3421
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHH
Q 003451 770 NTYNSIVDGYCKLNQRYEAITFV 792 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~ 792 (819)
+...+.++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 112244455556666665554
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=4.5e-13 Score=133.29 Aligned_cols=229 Identities=11% Similarity=-0.013 Sum_probs=145.9
Q ss_pred ccCCHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 003451 571 NGREIDQMLALSEEIYSGII---EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAK 647 (819)
Q Consensus 571 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 647 (819)
..+++++|+..++++++... +.+...+..++..+...|++++|...|+++.+.. +.+...+..++..|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 44667777777777776432 1235566667777777777777777777777653 2256677777777777777777
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 648 TNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 648 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
|.+.++++.+.. +.+..++..++.+|...|++++|...++++.+. .|+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 777777777653 335566777777777777777777777777764 33333333344444566777777777766665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 728 SGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCK--P-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 728 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
.. .++... ..++..+...++.++|+..++++.+.... | +...+..++..|.+.|++++|...++++.+.+|.+..
T Consensus 173 ~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 173 KS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp HS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred cC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 32 222222 33555566667777777777776542110 0 1456677777777777777777777777777776644
Q ss_pred H
Q 003451 805 E 805 (819)
Q Consensus 805 ~ 805 (819)
.
T Consensus 251 ~ 251 (275)
T 1xnf_A 251 E 251 (275)
T ss_dssp H
T ss_pred H
Confidence 3
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=1.2e-12 Score=121.12 Aligned_cols=170 Identities=12% Similarity=0.027 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003451 628 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 707 (819)
Q Consensus 628 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 707 (819)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..++.+|.+.|++++|...++++.... ..+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 66788889999999999999999999998864 5577888999999999999999999999998763 336778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHh
Q 003451 708 AYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRY 786 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 786 (819)
.+...+++++|.+.+.+..+.. .-+...+..++.++...|++++|++.++++++. .| +..+|..++.+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHH
Confidence 9999999999999999998853 235678889999999999999999999999984 56 7888999999999999999
Q ss_pred HHHHHHHHhhhcCCCC
Q 003451 787 EAITFVNNLSKLDPHV 802 (819)
Q Consensus 787 ~A~~~~~~~~~~~p~~ 802 (819)
+|+..++++++++|++
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999998865
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.52 E-value=1.5e-10 Score=127.27 Aligned_cols=454 Identities=11% Similarity=0.061 Sum_probs=295.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCC---HHHHHHHH
Q 003451 296 EEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGL---LEEAMELK 372 (819)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~ 372 (819)
.+....|++.+..+ +-|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.|. ++.+.++|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 33444556665554 568999999999999999999999999999987 56678889999999888899 99999999
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHHc---------
Q 003451 373 TQMVEIG-ITPDVFTYTTLLSGFEKAGKD--------ESAMKVFEEMRS-AGC-KP-NICTFNALIKMHGN--------- 431 (819)
Q Consensus 373 ~~m~~~g-~~pd~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~--------- 431 (819)
++.+... ..|++..|...+....+.++. +...++|+.++. .|. .+ ....|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9999863 137888888877766665543 334577777654 455 44 45788888876542
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003451 432 RGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSI 511 (819)
Q Consensus 432 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 511 (819)
.++++.+.++|++++......-..+|......-...+. ..+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHH
Confidence 34578899999998863222123344333222111111 011111111 01123334444
Q ss_pred HHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCH
Q 003451 512 YKRMLEA--GVT---------------P-----D---LSTYNAVLAALARGG-------MWEQSEKIFAEMKGGRCKPNE 559 (819)
Q Consensus 512 ~~~~~~~--~~~---------------~-----~---~~~~~~l~~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~ 559 (819)
+.++... ++. | + ...|...+..-...+ ..+.+..+|++.... ++-..
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 4332210 110 0 0 234444444333322 123455677777664 34567
Q ss_pred HHHHHHHHHHHccCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---------CCC-
Q 003451 560 LTYSSLLHAYANGREIDQML-ALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF---------SPD- 628 (819)
Q Consensus 560 ~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~- 628 (819)
..|...+.-+...|+.++|. .+++..+.. .+.+..++...+......|++++|..+|+.+++... .|.
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~ 422 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTN 422 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcc
Confidence 77777777777778888886 888888764 355667777778888888888888888888775310 121
Q ss_pred -----------HHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 003451 629 -----------IPTLNAMISIYGRRQMVAKTNEILHFMNDS-GFTPSLTTYNTLMYMYSRS-ENFARAEDVLREILAKGI 695 (819)
Q Consensus 629 -----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 695 (819)
...|...+....+.|..+.|..+|+++.+. + ......|...+..-.+. ++.+.|.++|+..++. +
T Consensus 423 ~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 423 ESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred hhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 235667777777788899999999998875 2 22334444333333344 4589999999999876 4
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003451 696 KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYN 773 (819)
Q Consensus 696 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 773 (819)
.-+...|..++......|+.+.|+.+|++.+.....+ ....|..++..-...|+.+.+.++.+++.+. .|+..-..
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~ 578 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLE 578 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHH
Confidence 4467777788888888899999999999988753322 2246777777777889999999999999874 45433444
Q ss_pred HHHHHH
Q 003451 774 SIVDGY 779 (819)
Q Consensus 774 ~l~~~~ 779 (819)
.+.+-|
T Consensus 579 ~f~~ry 584 (679)
T 4e6h_A 579 EFTNKY 584 (679)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 444444
No 57
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.6e-13 Score=145.81 Aligned_cols=282 Identities=11% Similarity=0.044 Sum_probs=180.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH
Q 003451 491 TFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPDL----STYNAVLAALARGGMWEQSEKIFAEMKGGRC-KPNELTYSSL 565 (819)
Q Consensus 491 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l 565 (819)
.+..+...+...|++++|...|+++.+.+.. +. ..+..+...+...|++++|+..+++..+... ..+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------- 121 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND------- 121 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-------
Confidence 3444555666667777777777766665322 22 3555666666666677777666666543200 000
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHH
Q 003451 566 LHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK----GF-SPDIPTLNAMISIYG 640 (819)
Q Consensus 566 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~ 640 (819)
.+.....+..++..|...|++++|...+++..+. +- ......+..+...|.
T Consensus 122 ------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 122 ------------------------RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred ------------------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 0111223334444444455555555544444321 00 112335666666777
Q ss_pred hcCC-----------------hHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C
Q 003451 641 RRQM-----------------VAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENFARAEDVLREILAKGIK-P 697 (819)
Q Consensus 641 ~~~~-----------------~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p 697 (819)
..|+ +++|++.+++..+. +..+ ...++..+...|...|++++|+..+++.++.... .
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 7777 77777777665432 1111 2246778888899999999999999988753110 1
Q ss_pred C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C
Q 003451 698 D----IISYNTVIFAYCRNGRMKEASRIFSEMRDSG--LV---PDVITYNTFVASYAADSLFVEALDVVRYMIKQ----G 764 (819)
Q Consensus 698 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 764 (819)
+ ...+..++..|...|++++|.+.++++.+.. .. ....++..++..+...|++++|..+++++++. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 3378888999999999999999999987631 11 11357888999999999999999999998763 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 765 CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 765 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
..+ ...++..++..|...|++++|..+++++.++......
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhccc
Confidence 111 2457889999999999999999999999998765433
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.51 E-value=1.3e-12 Score=127.26 Aligned_cols=210 Identities=11% Similarity=0.053 Sum_probs=140.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003451 561 TYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYG 640 (819)
Q Consensus 561 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 640 (819)
.+..+...+...|++++|+..++++++.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34444444555555555555555555432 3345555556666666666666666666666543 235677777888888
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 003451 641 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 720 (819)
Q Consensus 641 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 720 (819)
..|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887754 4567778888888888999999999999888753 3367788888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 721 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 721 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
.++++.+.. ..+..++..++.++...|++++|...++++++. .| +...+..+..
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHHHHTC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHHHHHH
Confidence 999888753 235678888889999999999999999999884 45 4555544443
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.50 E-value=8e-12 Score=122.31 Aligned_cols=203 Identities=10% Similarity=-0.004 Sum_probs=144.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003451 562 YSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGR 641 (819)
Q Consensus 562 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 641 (819)
+..+...+...|++++|...++++++.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++..|..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3444444445555555555555544432 3344555556666666666666666666666543 2356677788888888
Q ss_pred cCChHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 003451 642 RQMVAKTNEILHFMNDSGFTP-SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASR 720 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 720 (819)
.|++++|.+.++++.+.+..| +...+..++.++...|++++|.++++++.+.. +.+...+..++..|...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888887732334 45667888888899999999999999888753 3357888888899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003451 721 IFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 721 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 770 (819)
.++++.+.. ..+...+..++..+...|++++|.++++++.+. .|+..
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~ 243 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSL 243 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCH
Confidence 999988743 235667888888888999999999999999884 45433
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.3e-12 Score=138.39 Aligned_cols=282 Identities=12% Similarity=0.029 Sum_probs=170.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH
Q 003451 488 ERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD----LSTYNAVLAALARGGMWEQSEKIFAEMKGGRC-KPNELTY 562 (819)
Q Consensus 488 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ 562 (819)
....+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...+++...... ..+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--- 83 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ--- 83 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccc---
Confidence 3444555666666667777777777666665322 2 24455566666666666666666665542100 0000
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHH
Q 003451 563 SSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SPD----IPTLNAMIS 637 (819)
Q Consensus 563 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~ 637 (819)
+.....+..++..+...|++++|...+++..+... ..+ ..++..+..
T Consensus 84 ----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 84 ----------------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 01122334444455555555555555554432100 011 335666666
Q ss_pred HHHhcCC--------------------hHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 638 IYGRRQM--------------------VAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENFARAEDVLREILA 692 (819)
Q Consensus 638 ~~~~~~~--------------------~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 692 (819)
.|...|+ +++|.+.+++..+. +..+ ...++..+...|...|++++|...+++.++
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777 77777777665432 1111 123567778888888888888888888764
Q ss_pred CCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 693 KGI-KPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD----VITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 693 ~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
... .++ ..++..++..|...|++++|...+++..+... ..+ ..++..++..+...|++++|+..++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 111 34777788888888888888888888775210 011 34677888888888888888888888775
Q ss_pred cC----CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 763 QG----CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 763 ~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.. ..+ ...++..++..|...|++++|...++++.+..+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 31 111 1567778888888888888888888888776443
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=6.7e-13 Score=140.61 Aligned_cols=305 Identities=12% Similarity=0.016 Sum_probs=210.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 003451 451 KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPE----RDTFNTLISAYSRCGSFDQAMSIYKRMLEA----GVTP 522 (819)
Q Consensus 451 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~ 522 (819)
......+......+...|++++|...|+++.+.+.. + ...+..+...+...|++++|...++++... +..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445667788889999999999999999999887433 3 356788899999999999999999987653 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HH
Q 003451 523 -DLSTYNAVLAALARGGMWEQSEKIFAEMKGGRC-KPN----ELTYSSLLHAYANGRE--------------------ID 576 (819)
Q Consensus 523 -~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~ 576 (819)
...++..+...+...|++++|...+++..+... ..+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 245677778888899999999999888764210 011 2244444555555555 44
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 577 QMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSP-DIPTLNAMISIYGRRQMVAKTNEILHFM 655 (819)
Q Consensus 577 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 655 (819)
+|+..+++.+.. + .+.+..+ ....+..+...|...|++++|.+.+++.
T Consensus 165 ~A~~~~~~al~~----------------------------~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 165 AAVDFYEENLSL----------------------------V---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHHHH----------------------------H---HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------------------H---HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444444333220 0 0111001 1345677777788888888888888777
Q ss_pred hhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003451 656 NDSGF-TPS----LTTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGRMKEASRIFSEM 725 (819)
Q Consensus 656 ~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 725 (819)
.+... .++ ..++..++..|...|++++|...+++.++.... .+ ..++..++..|...|++++|.+.++++
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 64310 112 236778888899999999999999988743100 11 567888889999999999999999998
Q ss_pred HHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHhH
Q 003451 726 RDSGL-VPD----VITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKP-NQNTYNSIVDGYCKLNQRYE 787 (819)
Q Consensus 726 ~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~ 787 (819)
.+... ..+ ..++..++..|...|++++|..+++++++. +..+ ...++..++..+...|+...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 76311 112 347888999999999999999999998753 2122 35677788888888887643
No 62
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=2.2e-11 Score=116.65 Aligned_cols=204 Identities=12% Similarity=0.011 Sum_probs=137.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003451 561 TYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYG 640 (819)
Q Consensus 561 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 640 (819)
.+..+...+...|++++|+..++++++.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444555555555555555554432 2334455555566666666666666666665543 235666777777788
Q ss_pred hc-CChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHH
Q 003451 641 RR-QMVAKTNEILHFMNDSGFTPS-LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEA 718 (819)
Q Consensus 641 ~~-~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 718 (819)
.. |++++|.+.++++.+.+..|+ ...+..++.++...|++++|+..++++.+.. +.+...+..++.++...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 88 888888888888776322333 4667778888888888888888888888753 23577788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003451 719 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 769 (819)
.+.++++.+.....+...+..++..+...|+.++|..+++.+.+. .|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~ 215 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYS 215 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCC
Confidence 888888877432135666777777778888888888888888763 4543
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.47 E-value=8.2e-13 Score=135.79 Aligned_cols=279 Identities=12% Similarity=0.037 Sum_probs=177.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH
Q 003451 492 FNTLISAYSRCGSFDQAMSIYKRMLEAGVTPD----LSTYNAVLAALARGGMWEQSEKIFAEMKGGRC-KPNELTYSSLL 566 (819)
Q Consensus 492 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~ 566 (819)
+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...+++...... ..+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-------- 78 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-------- 78 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc--------
Confidence 344455566666666666666666664322 2 24455566666666666666666665543100 000
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHh
Q 003451 567 HAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SPD----IPTLNAMISIYGR 641 (819)
Q Consensus 567 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~ 641 (819)
.+.....+..++..+...|++++|...+++..+... ..+ ..++..+...+..
T Consensus 79 -----------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 79 -----------------------QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 001122344445555555555555555555432100 011 2355666667777
Q ss_pred cCC--------------------hHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-
Q 003451 642 RQM--------------------VAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENFARAEDVLREILAKGI- 695 (819)
Q Consensus 642 ~~~--------------------~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~- 695 (819)
.|+ +++|.+.+++.... +..+ ...++..+...+...|++++|...++++.+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 777 77777777665432 1111 234677888889999999999999998874310
Q ss_pred CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 003451 696 KPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD----VITYNTFVASYAADSLFVEALDVVRYMIKQ--- 763 (819)
Q Consensus 696 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 763 (819)
..+ ..++..++..+...|++++|.+.+++..+... ..+ ..++..++..+...|++++|...++++++.
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 011 34788888999999999999999999876310 112 347788999999999999999999998763
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 764 -GCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 764 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+..+ ...++..++..|.+.|++++|...++++.+..+..
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 1111 24578899999999999999999999999887653
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.47 E-value=4.9e-11 Score=120.37 Aligned_cols=223 Identities=8% Similarity=-0.012 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-------cCCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003451 576 DQMLALSEEIYSGIIEPHAVLLKTLILVYS-------KSDLL-------MDTERAFLELKKKGFSPDIPTLNAMISIYGR 641 (819)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 641 (819)
++|...|++++... +.+...+..++..+. +.|++ ++|...|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34444555544432 334444444444433 34554 6777777777763112355677777777888
Q ss_pred cCChHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-hcCCHHHH
Q 003451 642 RQMVAKTNEILHFMNDSGFTPS-LT-TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC-RNGRMKEA 718 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 718 (819)
.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++++.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888774 343 33 67778888888888888888888888753 223444544333322 26888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 003451 719 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQG-CKP--NQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
.++|+++++.. .-+...|..++..+...|++++|..+++++++.. +.| ...+|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888887742 2256677788888888888888888888888752 344 4567778888888888888888888888
Q ss_pred hhcCCCCC
Q 003451 796 SKLDPHVT 803 (819)
Q Consensus 796 ~~~~p~~~ 803 (819)
.+..|++.
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 88888744
No 65
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.47 E-value=2.9e-12 Score=137.60 Aligned_cols=212 Identities=10% Similarity=-0.016 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 003451 575 IDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLL-MDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILH 653 (819)
Q Consensus 575 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 653 (819)
+++++..+++..... +.+...+..++..+...|++ ++|+..|++.++.. +.+...+..+...|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455556666555432 45677788888888888888 88888888888764 2357888999999999999999999999
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc--------CCHH
Q 003451 654 FMNDSGFTPSLTTYNTLMYMYSRS---------ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRN--------GRMK 716 (819)
Q Consensus 654 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 716 (819)
+..+. .|+...+..+..+|... |++++|++.++++++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99876 47778888899999998 99999999999999864 33588899999999988 9999
Q ss_pred HHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHH
Q 003451 717 EASRIFSEMRDSGLVP----DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITF 791 (819)
Q Consensus 717 ~A~~~~~~~~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 791 (819)
+|.+.|+++.+. .| +...|..++.+|...|++++|+..++++++. .| +...+..++.++...|++++|+..
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999984 44 6778999999999999999999999999984 56 677888999999999999999876
Q ss_pred HHHh
Q 003451 792 VNNL 795 (819)
Q Consensus 792 ~~~~ 795 (819)
+.++
T Consensus 315 ~~~~ 318 (474)
T 4abn_A 315 KGKT 318 (474)
T ss_dssp TTTC
T ss_pred hccc
Confidence 6554
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.1e-12 Score=139.34 Aligned_cols=281 Identities=12% Similarity=-0.005 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCH
Q 003451 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPER----DTFNTLISAYSRCGSFDQAMSIYKRMLEA----G-VTPDL 524 (819)
Q Consensus 454 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~ 524 (819)
...+..+...+...|++++|...|+++.+.+.. +. ..+..+...|...|++++|.+.++++.+. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 445566778899999999999999999987433 33 46888899999999999999999998763 1 11234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhCC
Q 003451 525 STYNAVLAALARGGMWEQSEKIFAEMKGGR-----CKPNELTYSSLLHAYANGRE----------IDQMLALSEEIYSGI 589 (819)
Q Consensus 525 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~ 589 (819)
..+..+...|...|++++|...+++..+.. ......++..+...|...|+ .+++...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~-------- 198 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA-------- 198 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH--------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH--------
Confidence 667777888888999999999888876421 01112244444455555555 1111111
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC
Q 003451 590 IEPHAVLLKTLILVYSKSDLLMDTERAFLELKK----KGF-SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPS 663 (819)
Q Consensus 590 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~ 663 (819)
+++|...+++..+ .+. ......+..+...|...|++++|.+.+++..+... ..+
T Consensus 199 --------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 199 --------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 3334443333321 010 01234566777778888888888888877765310 012
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC
Q 003451 664 ----LTTYNTLMYMYSRSENFARAEDVLREILAKGI--K---PDIISYNTVIFAYCRNGRMKEASRIFSEMRDS----GL 730 (819)
Q Consensus 664 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~ 730 (819)
..++..+..+|...|++++|...++++++... . ....++..++..|...|++++|.+.++++.+. +.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 23677888899999999999999998875311 0 11567888899999999999999999998763 11
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 731 VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 731 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
.+ ...++..++..|...|++++|..+++++++.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 1347888999999999999999999999874
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=8.8e-12 Score=130.61 Aligned_cols=232 Identities=7% Similarity=-0.031 Sum_probs=166.1
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCC--CC--C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCC----CCHHHHHH
Q 003451 566 LHAYANGREIDQMLALSEEIYSGI--IE--P-HAVLLKTLILVYSKSDLLMDTERAFLELKKK--GFS----PDIPTLNA 634 (819)
Q Consensus 566 ~~~~~~~~~~~~a~~~~~~~~~~~--~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~ 634 (819)
...+...|++++|+..+++.+... .+ + ...++..++.+|...|++++|...+.+..+. ... ....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 344556677777777777766531 01 1 2355666777777778888877777776642 111 01346778
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHhHHHH
Q 003451 635 MISIYGRRQMVAKTNEILHFMNDSGF-TPS----LTTYNTLMYMYSRSENFARAEDVLREILAK----GI-KPDIISYNT 704 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~ 704 (819)
+...|...|++++|.+.+++..+... ..+ ..++..++.+|...|++++|++.+++.++. +. .....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 88889999999999999888775310 112 136788999999999999999999998862 22 223678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003451 705 VIFAYCRNGRMKEASRIFSEMRDSG--L-VPD-VITYNTFVASYAADSL---FVEALDVVRYMIKQGCKP-NQNTYNSIV 776 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~g--~-~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 776 (819)
++..|.+.|++++|.+.+++..+.. . .|. ...+..++..+...|+ +++|+.++++. +..+ ....+..++
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 346 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 9999999999999999999988631 0 111 2245678888888998 77777777766 2334 356788999
Q ss_pred HHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 777 DGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
..|...|++++|..+++++.+...
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999987644
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=3.4e-11 Score=111.20 Aligned_cols=171 Identities=15% Similarity=0.076 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003451 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
+..+|..++..|...|++++|+..|++.++..+ .+..++..+...|.+.|++++|.+.+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 455677777788888888888888888777642 367788888888888999999998888887754 456677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003451 673 MYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE 752 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 752 (819)
.+...++++.|...+++..+.. +.+...+..++.+|.+.|++++|++.|+++.+... .+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 8888999999999999888753 33678888888999999999999999999888532 256788899999999999999
Q ss_pred HHHHHHHHHHcCCCCCH
Q 003451 753 ALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 753 A~~~~~~~~~~~~~p~~ 769 (819)
|+..++++++ +.|+.
T Consensus 160 A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHh--CCccC
Confidence 9999999988 45643
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=2.3e-10 Score=115.43 Aligned_cols=219 Identities=11% Similarity=0.007 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhc
Q 003451 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYA-------NGREI-------DQMLALSEEIYSGIIEPHAVLLKTLILVYSK 606 (819)
Q Consensus 541 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 606 (819)
++|..+|++..... +.+...|..++..+. ..|++ ++|..++++.++.-.+.+...+..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666666666542 345556666655554 24664 7788888888774234556677778888888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 003451 607 SDLLMDTERAFLELKKKGFSPDIP-TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYS-RSENFARAE 684 (819)
Q Consensus 607 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~ 684 (819)
.|++++|..+|+++++.... +.. .|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888875322 333 78888888888899999999999988764 344455544443322 369999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 685 DVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG-LVP--DVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 685 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
++|+++++.. +.+...|..++..+.+.|++++|+.+|+++++.. +.| ....|..++..+...|++++|..+++++.
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998753 3368888899999999999999999999999853 354 35678888888889999999999999998
Q ss_pred Hc
Q 003451 762 KQ 763 (819)
Q Consensus 762 ~~ 763 (819)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.38 E-value=1.3e-11 Score=125.27 Aligned_cols=242 Identities=15% Similarity=0.154 Sum_probs=172.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------C
Q 003451 558 NELTYSSLLHAYANGREIDQMLALSEEIYSG-------IIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK------G 624 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 624 (819)
+..++..+...+...|++++|+..++++++. ..+.....+..++..+...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888999999999999999998873 23444667888899999999999999999998753 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 003451 625 F-SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS------GFTP-SLTTYNTLMYMYSRSENFARAEDVLREILAK--- 693 (819)
Q Consensus 625 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 693 (819)
- ......+..+...|...|++++|.+.++++.+. +..| ....+..++..|...|++++|+++++++++.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 123456788888999999999999999988864 2122 3356788889999999999999999998763
Q ss_pred ---CCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHhcCChHHHHH
Q 003451 694 ---GIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDS-------GLVPDV-------ITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 694 ---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~-------~~~~~l~~~~~~~g~~~~A~~ 755 (819)
+..| ...++..++.+|...|++++|.+.++++.+. ...+.. ..+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 2567888899999999999999999998862 111111 122333334445566777777
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 756 VVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 756 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.++..... .| +..++..++.+|.+.|++++|.+++++++++.|.
T Consensus 266 ~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 77777652 34 5678999999999999999999999999988664
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=2.1e-11 Score=130.89 Aligned_cols=189 Identities=12% Similarity=0.036 Sum_probs=165.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003451 610 LMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMV-AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLR 688 (819)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 688 (819)
++++...++...... ..+...+..+...+...|++ ++|++.+++..+.. +.+...|..+..+|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666665543 34788899999999999999 99999999999864 4567899999999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CChH
Q 003451 689 EILAKGIKPDIISYNTVIFAYCRN---------GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD--------SLFV 751 (819)
Q Consensus 689 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~--------g~~~ 751 (819)
++++. .|+...+..+..+|... |++++|.+.++++.+... -+...|..++.+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99985 56788999999999999 999999999999998532 2577899999999998 9999
Q ss_pred HHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 752 EALDVVRYMIKQGCKP----NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 752 ~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+|+..++++++. .| +...|..++.+|...|++++|...++++.+++|++...
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a 294 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999985 45 78899999999999999999999999999999998654
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=3.7e-11 Score=111.08 Aligned_cols=171 Identities=12% Similarity=0.113 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003451 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 709 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 709 (819)
..+..++..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456677788889999999999999888753 4577888999999999999999999999998763 34678888999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 003451 710 CRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
...|++++|.+.++++.+.. ..+...+..++..+...|++++|+.+++++++.. ..+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998853 3367788899999999999999999999999853 336788999999999999999999
Q ss_pred HHHHHhhhcCCCCCH
Q 003451 790 TFVNNLSKLDPHVTK 804 (819)
Q Consensus 790 ~~~~~~~~~~p~~~~ 804 (819)
..++++.+..|+++.
T Consensus 165 ~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 165 PHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHCCCG
T ss_pred HHHHHHHHcCCCchh
Confidence 999999999887653
No 73
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=1.5e-11 Score=126.32 Aligned_cols=275 Identities=12% Similarity=0.050 Sum_probs=133.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHH
Q 003451 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDID----VYAYTSLITTYASNGRYREAVMVFKKMEEE----GCK-PTLITY 246 (819)
Q Consensus 176 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~ 246 (819)
+......+...|++++|...++.+.+.... + ..++..+...|...|++++|...|++..+. +.. ....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455666777777777777776665332 3 356667777777777777777777765432 111 123355
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHcCCC--------------------HHHHHHH
Q 003451 247 NVILNVYGKMGMPWNKIMALVEGMKSAGVK-PD----SYTFNTLISCCRRGSL--------------------HEEAAGV 301 (819)
Q Consensus 247 ~~ll~~~~~~g~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~~g~--------------------~~~a~~~ 301 (819)
..+...|...| ++++|...+++..+.... .+ ..++..+...+...|+ +++|.+.
T Consensus 87 ~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 87 GNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 55555666666 566666665554432100 01 2234444444444444 4444444
Q ss_pred HHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Q 003451 302 FEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCL-PSIVTYNSLISAYARDGLLEEAMELKTQMVEIG- 379 (819)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g- 379 (819)
+++..... ...+.. ....++..+...+...|++++|.+.+++..+..
T Consensus 166 ~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 166 YEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44432210 000000 012234444444555555555555554443320
Q ss_pred ---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC-
Q 003451 380 ---ITP-DVFTYTTLLSGFEKAGKDESAMKVFEEMRSAG----CKP-NICTFNALIKMHGNRGNFVEMMKVFDEINKCN- 449 (819)
Q Consensus 380 ---~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 449 (819)
..+ ...++..+...+...|++++|...+++..... ..+ ...++..+...+...|++++|...+++.....
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 000 01144444555555555555555555443210 000 13344555555556666666665555543320
Q ss_pred ---C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 003451 450 ---C-KPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRA 483 (819)
Q Consensus 450 ---~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 483 (819)
. .....++..+...|...|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0 011334555666666666666666666666553
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=4.8e-11 Score=124.99 Aligned_cols=230 Identities=7% Similarity=-0.054 Sum_probs=159.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC------CCCHHHHH
Q 003451 530 VLAALARGGMWEQSEKIFAEMKGGRC-KP----NELTYSSLLHAYANGREIDQMLALSEEIYSGII------EPHAVLLK 598 (819)
Q Consensus 530 l~~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 598 (819)
....+...|++++|+..|++..+... .+ ...++..+...|...|++++|+..+++.++... .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34455666777777777777654310 11 224566666667777777777777776654211 11134567
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CC-CCCHHHHH
Q 003451 599 TLILVYSKSDLLMDTERAFLELKKKGF-SPD----IPTLNAMISIYGRRQMVAKTNEILHFMNDS----GF-TPSLTTYN 668 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~p~~~~~~ 668 (819)
.++.+|...|++++|...+++..+... ..+ ..++..+...|...|++++|++.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 778888888888888888888764210 112 246788889999999999999999988862 22 33456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CC-CHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 003451 669 TLMYMYSRSENFARAEDVLREILAKGI---KP-DIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPD-VITYNTF 740 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~-~~~~~~l 740 (819)
.++.+|.+.|++++|...+++.++... .+ ....+..+...|...|+ +++|..++++. +..++ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 999999999999999999998875310 11 13335677888889998 77777777765 23332 2467789
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 003451 741 VASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+..|...|++++|...++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999876
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=7e-11 Score=113.48 Aligned_cols=202 Identities=13% Similarity=0.044 Sum_probs=149.1
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003451 592 PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM 671 (819)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 671 (819)
.++..+...+..+...|++++|...|++.++....++...+..+...+...|++++|++.+++..+.. +.+...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45677778888888889999999999988887543677777778888888899999999888888763 33456788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 003451 672 YMYSRSENFARAEDVLREILAKGIKPDI-------ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD---VITYNTFV 741 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~ 741 (819)
.+|...|++++|+..+++.++.. +.+. ..|..+...+...|++++|++.|+++++ ..|+ ...+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHH
Confidence 88888899999999998888753 2234 4577778888888889999999888887 4555 35677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 742 ASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.++...| ..+++++...+ ..+...|... .....|.+++|+..++++.+++|++...
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~ 216 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEI 216 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence 7776544 34455555532 2233444333 2345567899999999999999998544
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=2.2e-11 Score=135.71 Aligned_cols=167 Identities=10% Similarity=0.047 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003451 628 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 707 (819)
Q Consensus 628 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 707 (819)
+..+++.|...|.+.|++++|++.|++..+.. +-+..+|..++.+|.+.|++++|++.|+++++.+ +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35678888888888888888888888888763 4456788888888999999999999999888753 224788888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 003451 708 AYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQR 785 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 785 (819)
+|.+.|++++|++.|+++++. .| +...|..++.+|...|++++|+..++++++ +.| +...+..++.+|...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccH
Confidence 999999999999999998884 44 456888899999999999999999999988 456 678888999999999999
Q ss_pred hHHHHHHHHhhhcCC
Q 003451 786 YEAITFVNNLSKLDP 800 (819)
Q Consensus 786 ~~A~~~~~~~~~~~p 800 (819)
++|.+.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999888877644
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.32 E-value=1.5e-10 Score=120.95 Aligned_cols=227 Identities=11% Similarity=-0.002 Sum_probs=162.3
Q ss_pred HHHccCCHHHHHHHHHHHHhCCC--C---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CCC----CHHHHHHHH
Q 003451 568 AYANGREIDQMLALSEEIYSGII--E---PHAVLLKTLILVYSKSDLLMDTERAFLELKKKG--FSP----DIPTLNAMI 636 (819)
Q Consensus 568 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~ 636 (819)
.+...|++++|+..++++..... . ....++..++.+|...|++++|...+.+..+.. ... ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 35567777777777777665321 1 124456667777888888888888877766421 011 134677888
Q ss_pred HHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHHHHH
Q 003451 637 SIYGRRQMVAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENFARAEDVLREILA-----KGIKPDIISYNTVI 706 (819)
Q Consensus 637 ~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~~l~ 706 (819)
..|...|++++|.+.+++..+. +-.+ ...++..++.+|...|++++|++.+++.++ .. +....++..++
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 8889999999999988887753 1111 124678889999999999999999999886 42 22367888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003451 707 FAYCRNGRMKEASRIFSEMRDSGL---VPD-VITYNTFVASYAADSL---FVEALDVVRYMIKQGCKP-NQNTYNSIVDG 778 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 778 (819)
..|.+.|++++|...+++..+... .+. ...+..+...+...|+ +++|+.++++. +..+ ....+..++..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHH
Confidence 999999999999999999987311 122 2345666666777788 77777777763 2233 34567789999
Q ss_pred HHhcCCHhHHHHHHHHhhhc
Q 003451 779 YCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 779 ~~~~g~~~~A~~~~~~~~~~ 798 (819)
|...|++++|...++++.+.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=1.8e-09 Score=112.56 Aligned_cols=233 Identities=12% Similarity=0.058 Sum_probs=135.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC----CCHHHHH
Q 003451 565 LLHAYANGREIDQMLALSEEIYSG----IIE--P-HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFS----PDIPTLN 633 (819)
Q Consensus 565 l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~ 633 (819)
+...+...|++++|...+++.+.. +.. + ....+..+..++...|++++|...+++..+.... .....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 334444455555555555444321 111 1 1233444556666666677776666666543211 1234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHH
Q 003451 634 AMISIYGRRQMVAKTNEILHFMNDSGFTP-S-LTTYN----TLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNT 704 (819)
Q Consensus 634 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ 704 (819)
.+...+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 67777778888888888887776431111 1 11111 233446788888888888887765322111 234567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003451 705 VIFAYCRNGRMKEASRIFSEMRDS----GLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 705 l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 779 (819)
+...+...|++++|...++++.+. |..++. ..+..++.++...|++++|...++++.+.. +. ......+
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~~ 332 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISHF 332 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHHH
Confidence 778888889999998888887652 211122 256677788888899999999988887531 10 0112233
Q ss_pred HhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 780 CKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 780 ~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
...| .....+++++....|.+...
T Consensus 333 ~~~g--~~~~~ll~~~~~~~~~~~~~ 356 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLNTLPELE 356 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTTCSCHHH
T ss_pred HHcc--HHHHHHHHHHHhCCCCchHH
Confidence 4444 56677777777777754333
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=2e-11 Score=123.78 Aligned_cols=133 Identities=20% Similarity=0.134 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-------CCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHC------CC
Q 003451 279 SYTFNTLISCCRRGSLHEEAAGVFEEMKLA-------GFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKIN------GC 345 (819)
Q Consensus 279 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------g~ 345 (819)
..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++.... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345555556666666666666666665542 11223344555555566666666666666555432 11
Q ss_pred -CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 346 -LPSIVTYNSLISAYARDGLLEEAMELKTQMVEI------GITP-DVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (819)
Q Consensus 346 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-d~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 411 (819)
.....++..+...|...|++++|.+.++++.+. +..| ....+..+...+...|++++|.+.++++.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112334555555555555555555555555442 1111 12234444444444455555554444443
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=1.4e-09 Score=113.39 Aligned_cols=268 Identities=9% Similarity=-0.050 Sum_probs=179.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHH
Q 003451 533 ALARGGMWEQSEKIFAEMKGGRCKPNEL----TYSSLLHAYANGREIDQMLALSEEIYSGII-EPH----AVLLKTLILV 603 (819)
Q Consensus 533 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~ 603 (819)
.+...|++++|...+++........+.. .+..+...+...|++++|...+++.+.... ..+ ...+..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555554432111111 233344445556666666666665543110 011 2335667888
Q ss_pred HhcCCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC----CCHHHHHHHHH
Q 003451 604 YSKSDLLMDTERAFLELKKK----GFS--PD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFT----PSLTTYNTLMY 672 (819)
Q Consensus 604 ~~~~~~~~~a~~~~~~~~~~----~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~ 672 (819)
+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++..+.... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999988752 221 22 345667888899999999999999988764211 12356788889
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHH
Q 003451 673 MYSRSENFARAEDVLREILAKGIKPD-IISYN-----TVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVITYNTFVAS 743 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l~~~ 743 (819)
.+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++..+....+ ....+..++..
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 99999999999999999875311111 11222 23345779999999999999887632211 12356788889
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 744 YAADSLFVEALDVVRYMIKQ----GCKPNQ-NTYNSIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
+...|++++|...++++.+. |..++. ..+..++.++...|+.++|...++++.+..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999999999999998753 211222 3677889999999999999999999887644
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=9.4e-10 Score=105.51 Aligned_cols=208 Identities=10% Similarity=0.025 Sum_probs=161.7
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003451 556 KPNELTYSSLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAM 635 (819)
Q Consensus 556 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 635 (819)
..++..+......+...|++++|+..+++.++...+++...+..++.++...|++++|...+++..+.... +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 34667888889999999999999999999998764367777777999999999999999999999987422 56788999
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhHHHHH
Q 003451 636 ISIYGRRQMVAKTNEILHFMNDSGFTPSL-------TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD---IISYNTV 705 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 705 (819)
...|...|++++|++.+++..+.. +.+. ..|..+...+...|++++|++.|+++++. .|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999999863 3445 45788888999999999999999999985 444 5677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 706 IFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 706 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
..+|...| ...++++...+ ..+...+.... ....+.+++|+..++++++ +.| +..+...+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHH
Confidence 88776544 44556665542 22344444333 4456779999999999998 467 4555544443
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.23 E-value=1.3e-09 Score=113.59 Aligned_cols=227 Identities=9% Similarity=-0.042 Sum_probs=155.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC---C---CCHHHHHHH
Q 003451 532 AALARGGMWEQSEKIFAEMKGGRC-KPN----ELTYSSLLHAYANGREIDQMLALSEEIYSGII---E---PHAVLLKTL 600 (819)
Q Consensus 532 ~~~~~~g~~~~A~~~~~~m~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~---~~~~~~~~l 600 (819)
..+...|++++|+..|++..+... .++ ..++..+...|...|+++.|+..+++.++... . ....++..+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345566777777777776654310 112 23555566667777777777777766654210 1 123456677
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHhh-----CCCCCCHHHHHHH
Q 003451 601 ILVYSKSDLLMDTERAFLELKKK----GFSP-DIPTLNAMISIYGRRQMVAKTNEILHFMND-----SGFTPSLTTYNTL 670 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~~l 670 (819)
+.+|...|++++|...|++..+. +..+ ...++..+...|...|++++|++.+++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 77888888888888888776642 1111 134577888889999999999999998876 32 3335678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003451 671 MYMYSRSENFARAEDVLREILAKGI---KPD-IISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPDV-ITYNTFVA 742 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~---~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~-~~~~~l~~ 742 (819)
+.+|.+.|++++|...+++..+... .+. ...+..+...+...|+ +++|...+++. +..++. ..+..++.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHH
Confidence 9999999999999999999886421 111 3455666677777888 77777777762 223222 36678999
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 003451 743 SYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~ 762 (819)
.|...|++++|...++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999875
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=4.9e-10 Score=124.88 Aligned_cols=166 Identities=8% Similarity=0.011 Sum_probs=133.1
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003451 592 PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLM 671 (819)
Q Consensus 592 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 671 (819)
.+...+..++.+|.+.|++++|+..|++.++.. +.+..++..+..+|.+.|++++|++.|++..+.. +-+...|..++
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 345677778888888888888888888887764 2257788888888888888888888888888763 44567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCh
Q 003451 672 YMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLF 750 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 750 (819)
.+|...|++++|++.|+++++.. +-+...|+.++.+|.+.|++++|++.|+++++. .| +...+..++.++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccH
Confidence 88999999999999999888753 225788888888899999999999999998884 44 456888888888999999
Q ss_pred HHHHHHHHHHHH
Q 003451 751 VEALDVVRYMIK 762 (819)
Q Consensus 751 ~~A~~~~~~~~~ 762 (819)
++|.+.++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888765
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=1.9e-09 Score=99.41 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 003451 595 VLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMY 674 (819)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 674 (819)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344555666666777777777777666543 2356677777888888888888888888887653 45667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 003451 675 SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
...|++++|.++++++.+.. +.+...+..++..+...|++++|.+.++++.+.. ..+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88889999999888888753 3467788888888889999999999998888753 235678888888889999999999
Q ss_pred HHHHHHHHc
Q 003451 755 DVVRYMIKQ 763 (819)
Q Consensus 755 ~~~~~~~~~ 763 (819)
..++++++.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999888763
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.18 E-value=2.6e-10 Score=113.86 Aligned_cols=198 Identities=16% Similarity=0.042 Sum_probs=137.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC---CCC--HHHHHHHHH
Q 003451 603 VYSKSDLLMDTERAFLELKKK----GFSPD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF---TPS--LTTYNTLMY 672 (819)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~ 672 (819)
.|...|++++|...|.+..+. |-.++ ..+++.+...|.+.|++++|+..+++..+... .+. ..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666665432 11111 34677777778888888888887777764310 111 346788888
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCC-C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHH
Q 003451 673 MYSRS-ENFARAEDVLREILAKGIKP-D----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV------ITYNTF 740 (819)
Q Consensus 673 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l 740 (819)
+|... |++++|+..|++.++..... + ..++..++..|.+.|++++|+..|+++.+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 99996 99999999999988531110 1 456888899999999999999999999985322211 257788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--hcCCHhHHHHHHHHhhhcCCCC
Q 003451 741 VASYAADSLFVEALDVVRYMIKQGCKPNQ------NTYNSIVDGYC--KLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+.++...|++++|+..++++++ +.|+. ..+..++..|. ..+++++|+..++++.+++|..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 8889999999999999999987 45532 23445566664 4578999999999998887755
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=6.5e-10 Score=104.60 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 003451 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAA 746 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 746 (819)
..+..+|.+.|++++|+..|++.++.. +-+...+..++.+|...|++++|...|+++++. .| +..++..++.+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 348888999999999999999999864 236888999999999999999999999999984 44 56788888888876
Q ss_pred cCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCC
Q 003451 747 DSL--FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 747 ~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
.|+ .+.+...+++... ..|....+...+.++...|++++|+..+++++++.|+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred HhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 654 4455666666543 233334556678888889999999999999999999754
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=3e-10 Score=113.11 Aligned_cols=227 Identities=15% Similarity=0.125 Sum_probs=154.9
Q ss_pred HccCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHH
Q 003451 570 ANGREIDQMLALSEEIYS-------GIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKK------GFSP-DIPTLNAM 635 (819)
Q Consensus 570 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 635 (819)
...|++++|+..+++.++ ...+.....+..++.++...|++++|...++++.+. +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666665544 232344667888899999999999999999988753 2112 34567888
Q ss_pred HHHHHhcCChHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHhH
Q 003451 636 ISIYGRRQMVAKTNEILHFMNDS------G-FTPSLTTYNTLMYMYSRSENFARAEDVLREILAK------GIKP-DIIS 701 (819)
Q Consensus 636 ~~~~~~~~~~~~A~~~~~~~~~~------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 701 (819)
...|...|++++|.+.++++.+. . .+....++..++..|...|++++|..+++++++. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988764 1 1223456788888999999999999999988764 1122 2567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHhcCChHHHH------HHHHHHHHcCCCC
Q 003451 702 YNTVIFAYCRNGRMKEASRIFSEMRDS-------GLVPDV-ITYNTFVASYAADSLFVEAL------DVVRYMIKQGCKP 767 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~~-~~~~~l~~~~~~~g~~~~A~------~~~~~~~~~~~~p 767 (819)
+..++.+|...|++++|..+++++.+. ...+.. ..+..+...+...+....+. ..++.... ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCH
Confidence 888889999999999999999998863 112222 23444444444433332222 22222211 122
Q ss_pred -CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhc
Q 003451 768 -NQNTYNSIVDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 768 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
...++..++..|...|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999875
No 88
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.16 E-value=2.6e-09 Score=100.67 Aligned_cols=187 Identities=9% Similarity=0.001 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 003451 612 DTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE----NFARAEDVL 687 (819)
Q Consensus 612 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 687 (819)
+|...|++..+.| +...+..+...|...+++++|++.|++..+.| +...+..+...|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777777764 77888888888888899999999999988865 66777778888877 6 899999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHH
Q 003451 688 REILAKGIKPDIISYNTVIFAYCR----NGRMKEASRIFSEMRDSGLV-PDVITYNTFVASYAA----DSLFVEALDVVR 758 (819)
Q Consensus 688 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 758 (819)
++..+.| +...+..|...|.. .+++++|.++|++..+.|.. .....+..++..|.. .+++++|+.+++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998764 67788888888877 78999999999998875431 016688888988888 788999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHhHHHHHHHHhhhcCCCCCHHHHHHH
Q 003451 759 YMIKQGCKPNQNTYNSIVDGYCKL-N-----QRYEAITFVNNLSKLDPHVTKELECKL 810 (819)
Q Consensus 759 ~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~p~~~~~~~~~l 810 (819)
++.+. ..+...+..|+..|... | +.++|+.+++++.+.+.......+..|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~l 209 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDRI 209 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 99885 24566778888888653 3 899999999999998766554444433
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.16 E-value=2.9e-09 Score=104.52 Aligned_cols=171 Identities=11% Similarity=0.118 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-HhHHHH
Q 003451 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS---LTTYNTLMYMYSRSENFARAEDVLREILAKGI-KPD-IISYNT 704 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~ 704 (819)
..+..+...+.+.|++++|+..|+++.+.. +.+ ...+..++.+|.+.|++++|+..|+++++... .+. ...+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 334444444444555555555555544432 112 33444444555555555555555555544311 001 233444
Q ss_pred HHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-H-----------------HHHHHHHHHHhcCChHHHHHHHH
Q 003451 705 VIFAYCR--------NGRMKEASRIFSEMRDSGLVPDV-I-----------------TYNTFVASYAADSLFVEALDVVR 758 (819)
Q Consensus 705 l~~~~~~--------~g~~~~A~~~~~~~~~~g~~p~~-~-----------------~~~~l~~~~~~~g~~~~A~~~~~ 758 (819)
++.++.. .|++++|...|+++++. .|+. . .+..++..|...|++++|+..++
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444 55555555555555442 1111 1 13677888999999999999999
Q ss_pred HHHHcCCCCC----HHHHHHHHHHHHhc----------CCHhHHHHHHHHhhhcCCCCCHH
Q 003451 759 YMIKQGCKPN----QNTYNSIVDGYCKL----------NQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 759 ~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++++. .|+ ...+..++.+|... |++++|+..++++++..|+++..
T Consensus 173 ~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 173 AVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 99874 343 46778888888866 88899999999999999988755
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.13 E-value=1.5e-08 Score=98.36 Aligned_cols=186 Identities=11% Similarity=-0.019 Sum_probs=119.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 613 TERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPSLTTYNTLMYMYSRSENFARAEDVLREIL 691 (819)
Q Consensus 613 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 691 (819)
|...|+++.+.+ .++...+..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665543 34555556777777778888888888887765542 1245566777778888888888888888887
Q ss_pred HCCCCC-----CHhHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 692 AKGIKP-----DIISYNTVIFA--YCRNG--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 692 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+......+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 44 23444444444 33334 788888888887653 34432323333377788888888888886654
Q ss_pred c-----CC---CC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 763 Q-----GC---KP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 763 ~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
. +. .| |+.++..++......|+ +|.++++++.+..|+++.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 2 00 24 55666566555556676 7888888888888887665
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.12 E-value=3.9e-09 Score=91.24 Aligned_cols=133 Identities=15% Similarity=0.254 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003451 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 745 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 745 (819)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|.++++++.+.+ ..+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 46677788888899999999999888753 3357778888888889999999999999988753 235667888888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 746 ADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
..|++++|..+++++.+.. ..+...+..++..+...|++++|...++++.+.+|.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 9999999999999998752 336778888999999999999999999999988875
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=4.4e-10 Score=99.17 Aligned_cols=130 Identities=14% Similarity=0.086 Sum_probs=102.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 003451 670 LMYMYSRSENFARAEDVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAAD 747 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~ 747 (819)
|+.++...|++++|++.+++.... .| +...+..+...|.+.|++++|++.|+++++. .| +..+|..++.+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 445566778888999888887653 23 3566777888899999999999999999884 33 567888999999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHH-HHHhhhcCCCCCHH
Q 003451 748 SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITF-VNNLSKLDPHVTKE 805 (819)
Q Consensus 748 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~p~~~~~ 805 (819)
|++++|+..++++++ +.| +...|..++..|.+.|++++|.+. ++++++++|+++.+
T Consensus 79 ~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 79 ENTDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred CchHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 999999999999988 456 678888999999999998876654 68999999987544
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=2.2e-09 Score=107.10 Aligned_cols=182 Identities=12% Similarity=0.027 Sum_probs=137.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 003451 609 LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTPS-LTTYNTLMYMYSRSENFARA 683 (819)
Q Consensus 609 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A 683 (819)
++++|...|.+. +..|...|++++|.+.+.+..+. |-+++ ..+|+.++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477888777766 34577889999999999888753 21111 45789999999999999999
Q ss_pred HHHHHHHHHCCC---CC--CHhHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChHH
Q 003451 684 EDVLREILAKGI---KP--DIISYNTVIFAYCRN-GRMKEASRIFSEMRDSGLV-PD----VITYNTFVASYAADSLFVE 752 (819)
Q Consensus 684 ~~~~~~~~~~~~---~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~ 752 (819)
+..+++.++... .+ ...++..+..+|... |++++|+..|++.++.... .+ ..++..++..+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999875311 11 145788999999996 9999999999999873110 01 3468899999999999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 753 ALDVVRYMIKQGCKPNQ------NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 753 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
|+..++++++....... ..|..++.++...|++++|+..++++++++|.....
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 99999999985322211 257788999999999999999999999999986554
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=1.4e-09 Score=108.28 Aligned_cols=227 Identities=13% Similarity=0.083 Sum_probs=157.6
Q ss_pred HhcCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------C-CCCCHHHHHHH
Q 003451 535 ARGGMWEQSEKIFAEMKG-------GRCKPNELTYSSLLHAYANGREIDQMLALSEEIYSG------I-IEPHAVLLKTL 600 (819)
Q Consensus 535 ~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 600 (819)
...|++++|+.+|++..+ ...+....++..+...|...|++++|+..++++++. . .+.....+..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345666666666666543 222334567888889999999999999999998764 1 13346678889
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHc-----CC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC------CCCC-CHHH
Q 003451 601 ILVYSKSDLLMDTERAFLELKKK-----GF--SPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS------GFTP-SLTT 666 (819)
Q Consensus 601 ~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~ 666 (819)
+.+|...|++++|...+.+..+. +. +.....+..+...|...|++++|.+.++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998754 11 123566888999999999999999999998865 1122 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCC-
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAK-------GIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRD----SG-LVP- 732 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g-~~p- 732 (819)
+..++.+|...|++++|..+++++++. ...+. ...|..+...+...+....+.. +..+.. .+ ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence 888999999999999999999998853 11222 3344444444444333332222 222221 11 112
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 733 DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
...++..++..|...|++++|..+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234788899999999999999999999876
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.05 E-value=5.3e-08 Score=94.53 Aligned_cols=184 Identities=10% Similarity=-0.013 Sum_probs=122.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 003451 578 MLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGF-SPDIPTLNAMISIYGRRQMVAKTNEILHFMN 656 (819)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 656 (819)
++..+++.++.+ .++...+..++.++...|++++|++++.+.++.+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 556666665544 34444445667777777888888888877766543 1256677778888888888888888888887
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 657 DSGFTP-----SLTTYNTLMYM--YSRSE--NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 657 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 45 24455555544 33334 888889999988764 34433333444478888999999998887654
Q ss_pred C-----CC---CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003451 728 S-----GL---VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 728 ~-----g~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 770 (819)
. +. .| +..++.+++......|+ +|.++++++.+ ..|+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 2 00 13 44566677777777776 88888888888 567543
No 96
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.03 E-value=9.4e-09 Score=100.79 Aligned_cols=188 Identities=7% Similarity=-0.020 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-C-CCHHHHHHH
Q 003451 596 LLKTLILVYSKSDLLMDTERAFLELKKKGFSPD---IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF-T-PSLTTYNTL 670 (819)
Q Consensus 596 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~-p~~~~~~~l 670 (819)
.+...+..+.+.|++++|...|+++++.... + ...+..+..+|.+.|++++|+..|+++.+..- . .....+..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3333444444444444444444444443211 1 33444444445555555555555555444310 0 112234444
Q ss_pred HHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHhH-----------------HHHHHHHHHhcCCHHHHHHHHHHH
Q 003451 671 MYMYSR--------SENFARAEDVLREILAKGIKPDIIS-----------------YNTVIFAYCRNGRMKEASRIFSEM 725 (819)
Q Consensus 671 ~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~ 725 (819)
+.++.. .|++++|+..|+++++.... +... +..++..|.+.|++++|+..|+++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 444444 55555555555555543111 1111 356788899999999999999999
Q ss_pred HHCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHhH
Q 003451 726 RDSGLVP--DVITYNTFVASYAAD----------SLFVEALDVVRYMIKQGCKPNQ----NTYNSIVDGYCKLNQRYE 787 (819)
Q Consensus 726 ~~~g~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~ 787 (819)
++..... ....+..++.+|... |++++|+..++++++. .|+. .....+...+.+.|++++
T Consensus 175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 8842211 235778888888866 8899999999999984 4643 344455555555555444
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=1e-09 Score=96.83 Aligned_cols=143 Identities=9% Similarity=-0.010 Sum_probs=113.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 003451 635 MISIYGRRQMVAKTNEILHFMNDSGFTPS-LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG 713 (819)
Q Consensus 635 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 713 (819)
|...+...|++++|++.++..... .|+ ...+..+...|.+.|++++|++.|+++++.. +-+...|..+..+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 344556678889999998887764 232 3446678899999999999999999999864 236889999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHH-HHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 003451 714 RMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDV-VRYMIKQGCKP-NQNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 714 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 784 (819)
++++|...|+++++. .| +..++..++..|.+.|++++|.+. ++++++ +.| ++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999984 44 567899999999999999877665 688888 467 67888888888877775
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=3.4e-09 Score=119.10 Aligned_cols=173 Identities=8% Similarity=-0.065 Sum_probs=110.1
Q ss_pred hcCCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 003451 605 SKSDLLMDTERAFLELK--------KKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSR 676 (819)
Q Consensus 605 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 676 (819)
...|++++|.+.+++.. +.. +.+...+..+...+...|++++|++.++++.+.. +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34455555555555554 221 2245566666777777777777777777776643 4455667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 003451 677 SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDV 756 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 756 (819)
.|++++|++.|+++++.. +.+...|..+..+|.+.|++++ .+.|+++++.+.. +...|..++.++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777777653 2246667777777777777777 7777777764221 455677777777777777777777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 003451 757 VRYMIKQGCKPN-QNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 757 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 784 (819)
++++++ +.|+ ...+..++.++...|+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 777766 4563 4566666766655444
No 99
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.01 E-value=8.4e-08 Score=94.40 Aligned_cols=222 Identities=10% Similarity=0.054 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CChH
Q 003451 576 DQMLALSEEIYSGIIEPHAVLLKTLILVYSKSD--LLMDTERAFLELKKKGFSPDIPTLNAMISIY----GRR---QMVA 646 (819)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 646 (819)
++|+.++++++..+ +.+..+++.-..++...+ ++++++..++.++...+. +..+|+.-...+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 45555555555543 333444444444555555 666666666666655322 344444433333 333 6778
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC------HHHH
Q 003451 647 KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFA--RAEDVLREILAKGIKPDIISYNTVIFAYCRNGR------MKEA 718 (819)
Q Consensus 647 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~A 718 (819)
++++.++.+.+.. +-+..+|+.-..++.+.|.++ +++++++++++.+.. |...|+.-...+...|+ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 8888888887754 556777777777777777777 888888888876533 67777776666666666 7888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 003451 719 SRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE-ALDVVRYMIKQG-CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
++.+++++..... |...|+.+...+.+.|+..+ +..+++++.+.+ ..| +...+..++++|.+.|+.++|++.++.+
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 8888888875333 66778888877877777443 555666665432 123 6677888888888888888888888888
Q ss_pred hh-cCCCC
Q 003451 796 SK-LDPHV 802 (819)
Q Consensus 796 ~~-~~p~~ 802 (819)
.+ .+|..
T Consensus 285 ~~~~Dpir 292 (306)
T 3dra_A 285 KSKYNPIR 292 (306)
T ss_dssp HHTTCGGG
T ss_pred HhccChHH
Confidence 86 67765
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=9.6e-09 Score=96.51 Aligned_cols=138 Identities=9% Similarity=0.005 Sum_probs=105.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 003451 634 AMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG 713 (819)
Q Consensus 634 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 713 (819)
.+...|.+.|++++|+..+++..+.. +.+...+..++.+|...|++++|+..|+++++.. +.+...|..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 38888999999999999999999864 5577889999999999999999999999999864 235888888888887665
Q ss_pred C--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003451 714 R--MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVD 777 (819)
Q Consensus 714 ~--~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 777 (819)
+ .+.+...++.... ..|....+...+.++...|++++|+..++++++ +.|+......+..
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4 4455666665532 233333556667778889999999999999998 6788665544443
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=8.5e-07 Score=94.75 Aligned_cols=125 Identities=6% Similarity=0.021 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003451 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE-NFARAEDVLREILAKGIKPDIISYNTVIFA 708 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 708 (819)
..|...+....+.+..+.|..+|+++ +.. ..+...|...+..-...+ +.+.|..+|+..++. +.-+...|...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~-~~~~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK-HPDSTLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 34555555555667788888888887 321 234444443333222233 688888888888765 22235556667777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 709 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
..+.|+.+.|+.+|+++. -....|..++..-...|+.+.+..+++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777888888888888862 1455677766666677888888887777763
No 102
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.00 E-value=4.7e-07 Score=96.76 Aligned_cols=378 Identities=7% Similarity=-0.052 Sum_probs=219.7
Q ss_pred HcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHH
Q 003451 361 RDG-LLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGN-FVEM 438 (819)
Q Consensus 361 ~~g-~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 438 (819)
+.| +++.|..+|+.+.+. -|. |+.+.+..+|+..+.. .|+...|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 367777777777653 122 8899999999988875 4688888888877766653 3556
Q ss_pred HHHHHHHhhC-CC-CCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHH
Q 003451 439 MKVFDEINKC-NC-KPDIVTWNTLLAVFG----QNGMDSEVSGVFKEMKRAGFIPER-DTFNTLISAYSRCGSFDQAMSI 511 (819)
Q Consensus 439 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 511 (819)
..+|+..... |. ..+...|...+..+. .+|+.+.+..+|++.+..... +. ..|..... +........+..+
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~-fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDFEN-FELELNKITGKKI 145 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHH-HHHHhccccHHHH
Confidence 6777776643 32 346677877777654 245677788888888764211 11 12222211 1111112222222
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--C-----HHHHHHHHHH
Q 003451 512 YKRMLEAGVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR--E-----IDQMLALSEE 584 (819)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~ 584 (819)
..+.. +.+..|..+++++...-...+...|...+.--...+ - .+.+..+|++
T Consensus 146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 22111 123333433433332100012334544443322211 0 3345667777
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC---C--
Q 003451 585 IYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS---G-- 659 (819)
Q Consensus 585 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~-- 659 (819)
++... +....++...+..+...|+.++|..+|.+.+.. +.+...+.. |....+.++. ++.+.+. .
T Consensus 205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhcc
Confidence 77643 455777777777778888888888888888877 223322222 2221111121 2222211 0
Q ss_pred ----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCC
Q 003451 660 ----FTP---SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG-RMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 660 ----~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~ 731 (819)
..+ ....|...+....+.++.+.|..+|+++ +. ...+...|...+..-...| +.+.|..+|+...+.. .
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~ 351 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-P 351 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-T
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-C
Confidence 001 1245667777777888999999999999 32 1224445543333333333 6999999999998852 2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 732 PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 732 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
-+...+..++......|+.+.|..+++++. .....|...+..-...|+.+.+.++++++.+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 245566677877788999999999999973 2567888888888889999999998988874
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.99 E-value=9.9e-09 Score=113.47 Aligned_cols=155 Identities=8% Similarity=-0.102 Sum_probs=83.4
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 003451 643 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIF 722 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 722 (819)
|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++.++.. +.+...+..++.+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45566666666555432 3345556666666666666666666666666542 224556666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc---CCHhHHHHHHHHhhhc
Q 003451 723 SEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKL---NQRYEAITFVNNLSKL 798 (819)
Q Consensus 723 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 798 (819)
++..+.. ..+...+..++.++...|++++|++.++++++. .| +...+..++.++... |++++|...++++++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6666532 113456666666666666666666666666653 33 455666666666666 6666666666666666
Q ss_pred CCCC
Q 003451 799 DPHV 802 (819)
Q Consensus 799 ~p~~ 802 (819)
+|..
T Consensus 158 ~p~~ 161 (568)
T 2vsy_A 158 GVGA 161 (568)
T ss_dssp TCCC
T ss_pred CCcc
Confidence 6654
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=7e-09 Score=88.03 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=90.5
Q ss_pred CCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH
Q 003451 695 IKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTY 772 (819)
Q Consensus 695 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 772 (819)
+.|+ ...+...+..|.+.|++++|++.|++.++.. ..+...|..++.++...|++++|+..++++++. .| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHH
Confidence 3444 4567778888999999999999999988853 225678888999999999999999999999984 55 67889
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 773 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
..++.+|...|++++|++.++++++++|++....
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~ 118 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 9999999999999999999999999999886543
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=2.7e-09 Score=119.85 Aligned_cols=163 Identities=12% Similarity=0.009 Sum_probs=142.4
Q ss_pred HhcCChHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 003451 640 GRRQMVAKTNEILHFMN--------DSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR 711 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 711 (819)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|++.|+++++.+ +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 432 4566788899999999999999999999999863 2368899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 003451 712 NGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
.|++++|.+.|+++++. .| +...+..++.++...|++++ +..++++++. .| +...|..++.+|.+.|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999984 44 55788999999999999999 9999999984 56 7789999999999999999999
Q ss_pred HHHHHhhhcCCCCCHHHHHH
Q 003451 790 TFVNNLSKLDPHVTKELECK 809 (819)
Q Consensus 790 ~~~~~~~~~~p~~~~~~~~~ 809 (819)
..++++++++|++....++.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~ 574 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTS 574 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHH
T ss_pred HHHHhhcccCcccHHHHHHH
Confidence 99999999999886665443
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=2.6e-08 Score=94.97 Aligned_cols=186 Identities=8% Similarity=0.033 Sum_probs=114.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHH
Q 003451 595 VLLKTLILVYSKSDLLMDTERAFLELKKKGFS-PD-IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL----TTYN 668 (819)
Q Consensus 595 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~ 668 (819)
..+..++..+...|++++|...|+++++.... +. ...+..++.+|.+.|++++|++.++++.+.. |+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 34455566677777777777777777764322 11 2456666777777777777777777776642 221 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003451 669 TLMYMYSR------------------SENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSG 729 (819)
Q Consensus 669 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 729 (819)
.+..++.. .|++++|+..|+++++. .|+ ...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHH----
Confidence 44444443 34455555555555543 122 1111111000 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 730 LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN----QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
......++..|...|++++|+..++++++. .|+ ...+..++.+|.+.|++++|++.++++....|...+
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 011245677899999999999999999984 453 257889999999999999999999999999887654
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.97 E-value=6.5e-09 Score=104.59 Aligned_cols=224 Identities=10% Similarity=0.070 Sum_probs=147.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 003451 536 RGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYAN-GREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTE 614 (819)
Q Consensus 536 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 614 (819)
..|++++|.+++++..+.. +. .+.. .+++++|...|.++ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567888888888776531 11 1233 57788888777765 45677889999999
Q ss_pred HHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--C-CCC--HHHHHHHHHHHHhcCCHHHHH
Q 003451 615 RAFLELKKKGFS-PD----IPTLNAMISIYGRRQMVAKTNEILHFMNDSG--F-TPS--LTTYNTLMYMYSRSENFARAE 684 (819)
Q Consensus 615 ~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~g~~~~A~ 684 (819)
..|.+..+.... .+ ..+++.+...|...|++++|+..+++..+.. . .+. ..++..+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 988887642100 01 3467778888888888888888888776531 0 111 2456777778877 8888888
Q ss_pred HHHHHHHHCCCCC-C----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHH
Q 003451 685 DVLREILAKGIKP-D----IISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD-VITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 685 ~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~ 754 (819)
..|++.++..... + ..++..+...|.+.|++++|+..|+++.+. +..+. ...+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888887541111 1 456777888888888888888888888762 11111 125666667777778888888
Q ss_pred HHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHhHHHH
Q 003451 755 DVVRYMIKQGCKPN------QNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 755 ~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
..+++++ . .|+ ......++..+ ..|+.+.+..
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8888887 3 332 12344555544 5677666655
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.96 E-value=2.9e-08 Score=93.82 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=41.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 003451 634 AMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG 713 (819)
Q Consensus 634 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 713 (819)
.+...+...|++++|++.+++.. .|+...+..++.+|...|++++|++.+++.++.. +.+...|..++.+|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 34444444455555555544432 2344444444444555555555555555444432 123444444444444445
Q ss_pred CHHHHHHHHHHHHH
Q 003451 714 RMKEASRIFSEMRD 727 (819)
Q Consensus 714 ~~~~A~~~~~~~~~ 727 (819)
++++|.+.|+++.+
T Consensus 86 ~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 86 KYDLAIKDLKEALI 99 (213)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 55555555444444
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.94 E-value=4.4e-08 Score=84.40 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 003451 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYC 710 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 710 (819)
.+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45667777788888888888888887653 4466777788888888888888888888888753 335677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 711 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
..|++++|.++++++.+.. ..+...+..++..+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8899999999998888753 235667888888888999999999999888763
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.94 E-value=6.1e-07 Score=88.28 Aligned_cols=232 Identities=9% Similarity=0.036 Sum_probs=161.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----hcC---CCH
Q 003451 540 WEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR--EIDQMLALSEEIYSGIIEPHAVLLKTLILVY----SKS---DLL 610 (819)
Q Consensus 540 ~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 610 (819)
.++|+.+++.++..+ +-+...|+.--..+...+ ++++++..++.++.... .+..++..-..++ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 356666666666542 334445555555555555 67777777777666542 2222332222222 333 678
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 003451 611 MDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVA--KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN------FAR 682 (819)
Q Consensus 611 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~~~ 682 (819)
+++..+++.+.+... .+-.+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+...|. +++
T Consensus 127 ~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 888888888887653 37777877777777778777 8999999998865 4577778877777777776 899
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH-HHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003451 683 AEDVLREILAKGIKPDIISYNTVIFAYCRNGRM-KEASRIFSEMRDSG--LVPDVITYNTFVASYAADSLFVEALDVVRY 759 (819)
Q Consensus 683 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 759 (819)
+++.+++++.... -|...|+.+...+.+.|+. +++..+.+++.+.+ -..+...+..++.++.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 9999999998743 3788999998889888884 44566777766532 123677899999999999999999999999
Q ss_pred HHHcCCCC-CHHHHHHHHH
Q 003451 760 MIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 760 ~~~~~~~p-~~~~~~~l~~ 777 (819)
+.+. +.| +...|...+.
T Consensus 284 l~~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHT-TCGGGHHHHHHHHH
T ss_pred HHhc-cChHHHHHHHHHHh
Confidence 9864 456 5566655443
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.93 E-value=1e-07 Score=89.63 Aligned_cols=175 Identities=11% Similarity=-0.007 Sum_probs=118.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHH
Q 003451 578 MLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQ----MVAKTNEILH 653 (819)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~ 653 (819)
|+..+++..+. .+...+..+...|...+++++|...|++..+.| +...+..|...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 44455555543 245555556666666667777777777766654 56666667666666 5 7778888887
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHh----cCCHHHHHHHHHH
Q 003451 654 FMNDSGFTPSLTTYNTLMYMYSR----SENFARAEDVLREILAKGIK-PDIISYNTVIFAYCR----NGRMKEASRIFSE 724 (819)
Q Consensus 654 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 724 (819)
+..+.| +...+..+...|.. .+++++|+++|++..+.+.. .+...+..|...|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 777654 55666777777766 77888888888888775421 026677777777777 7778888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcC
Q 003451 725 MRDSGLVPDVITYNTFVASYAAD-S-----LFVEALDVVRYMIKQG 764 (819)
Q Consensus 725 ~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 764 (819)
..+. ..+...+..++..|... | ++++|+.+++++.+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8774 22445677777777653 3 7888888888888765
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=1.3e-08 Score=92.64 Aligned_cols=161 Identities=11% Similarity=0.033 Sum_probs=111.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HH
Q 003451 632 LNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA-YC 710 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 710 (819)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|+..++++.... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4455566777788888888887776643 4456677778888888888888888888776542 344333322212 12
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHH
Q 003451 711 RNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 788 (819)
..+...+|...+++..+. .| +...+..++.++...|++++|+..++++++....+ +...+..++.++...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 223334577888888774 34 46778888888888888888888888888743222 356788888888888888888
Q ss_pred HHHHHHhhh
Q 003451 789 ITFVNNLSK 797 (819)
Q Consensus 789 ~~~~~~~~~ 797 (819)
...+++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.91 E-value=2.6e-08 Score=98.83 Aligned_cols=164 Identities=9% Similarity=-0.068 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHH-HHH
Q 003451 628 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYN-TVI 706 (819)
Q Consensus 628 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~ 706 (819)
+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++... .|+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 45566777778888888888888888888753 446677888888888899999999988888764 34533332 223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcC
Q 003451 707 FAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN---QNTYNSIVDGYCKLN 783 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g 783 (819)
..+...++.++|...+++..+.. ..+...+..++..+...|++++|+..++++++. .|+ ...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHcC
Confidence 34667778888888888888753 225678888888899999999999999998874 442 677888899999999
Q ss_pred CHhHHHHHHHHhhh
Q 003451 784 QRYEAITFVNNLSK 797 (819)
Q Consensus 784 ~~~~A~~~~~~~~~ 797 (819)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999888888754
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.91 E-value=1.8e-08 Score=88.20 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=84.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 776 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 776 (819)
...+..+...+.+.|++++|...|+++++. .| +...|..++.+|...|++++|+..++++++ +.| +...|..++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCcHHHHHHH
Confidence 567777888888889999999999888874 33 566888888888999999999999999888 456 678888899
Q ss_pred HHHHhcCCHhHHHHHHHHhhhcCCCCC
Q 003451 777 DGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
.+|.+.|++++|+..+++++++.|+++
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999888764
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.89 E-value=3e-07 Score=91.67 Aligned_cols=168 Identities=12% Similarity=0.062 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CC--H
Q 003451 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSL------TTYNTLMYMYSRSENFARAEDVLREILAKGIK---PD--I 699 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~--~ 699 (819)
.+...+..+...|++++|.+.+.+..+.. +... ..+..++..+...|++++|+..+++..+.... +. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44455667788888999988888777653 1222 12344666778889999999999998853211 11 4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCC-C
Q 003451 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPD-----VITYNTFVASYAADSLFVEALDVVRYMIKQG----CKP-N 768 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p-~ 768 (819)
.+|+.++..|...|++++|...++++.+. ...|+ ..++..++..|...|++++|+.+++++++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 58888999999999999999999998731 01122 2588899999999999999999999987631 111 1
Q ss_pred HHHHHHHHHHHHhcCCHhHH-HHHHHHhhhcC
Q 003451 769 QNTYNSIVDGYCKLNQRYEA-ITFVNNLSKLD 799 (819)
Q Consensus 769 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 799 (819)
..+|..++.+|.+.|++++| ...++++.+..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 67888999999999999999 78788887653
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.86 E-value=5.6e-07 Score=89.73 Aligned_cols=165 Identities=13% Similarity=0.070 Sum_probs=125.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHH
Q 003451 634 AMISIYGRRQMVAKTNEILHFMNDSGF-TPSL----TTYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYN 703 (819)
Q Consensus 634 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~ 703 (819)
..+..+...|++++|.+++++..+... .++. ..+..++..+...|++++|+..++++++.... .+ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667888999999999999887421 1221 12345677777888999999999999974222 22 34689
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHH
Q 003451 704 TVIFAYCRNGRMKEASRIFSEMRDS-----GLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQ----GCKPN-QNTY 772 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~ 772 (819)
.++.+|...|++++|...++++.+. +..+.. .++..++..|...|++++|+.+++++++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999999999851 111122 37889999999999999999999998753 21222 6789
Q ss_pred HHHHHHHHhcCC-HhHHHHHHHHhhhc
Q 003451 773 NSIVDGYCKLNQ-RYEAITFVNNLSKL 798 (819)
Q Consensus 773 ~~l~~~~~~~g~-~~~A~~~~~~~~~~ 798 (819)
..++.+|.+.|+ +++|.+.++++.++
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 999999999995 69999999998765
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=6.2e-08 Score=97.38 Aligned_cols=224 Identities=10% Similarity=0.060 Sum_probs=153.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 003451 501 RCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALAR-GGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQML 579 (819)
Q Consensus 501 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 579 (819)
..|++++|.+++++..+.... .+.+ .+++++|...|.+. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 357788888888887653110 1222 57888888887765 34677889999999
Q ss_pred HHHHHHHhCCC---C--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--C-CCC--HHHHHHHHHHHHhcCChHHHH
Q 003451 580 ALSEEIYSGII---E--PHAVLLKTLILVYSKSDLLMDTERAFLELKKKG--F-SPD--IPTLNAMISIYGRRQMVAKTN 649 (819)
Q Consensus 580 ~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~~~~~~A~ 649 (819)
..+.+..+... . .....+..++.+|...|++++|...|++.++.. . .+. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 98888765311 1 114567788888999999999999999876531 1 111 3467778888888 9999999
Q ss_pred HHHHHHhhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCCHHHHH
Q 003451 650 EILHFMNDSGFTP-S----LTTYNTLMYMYSRSENFARAEDVLREILAK----GIKPD-IISYNTVIFAYCRNGRMKEAS 719 (819)
Q Consensus 650 ~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~ 719 (819)
+.+++..+..... + ..++..+...|.+.|++++|+..|+++++. +..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9998887641111 1 356788888999999999999999988753 11111 235666777788889999999
Q ss_pred HHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHH
Q 003451 720 RIFSEMRDSGLVPDV------ITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 720 ~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~ 755 (819)
..|++.. . .|+. ..+..++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999987 4 3321 1334445444 5677666655
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=1.4e-07 Score=90.40 Aligned_cols=197 Identities=13% Similarity=0.022 Sum_probs=144.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHhh------------CCCC-----
Q 003451 606 KSDLLMDTERAFLELKKKGFSPDIPTLNAM-------ISIYGRRQMVAKTNEILHFMND------------SGFT----- 661 (819)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~------------~~~~----- 661 (819)
..++...|.+.|.++....+. ....|..+ ...+.+.++..+++..+....+ .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 578888888888888876422 45667666 4455555555555555555443 1100
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----
Q 003451 662 ---PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV---- 734 (819)
Q Consensus 662 ---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---- 734 (819)
--......+..++...|++++|.+.|+.+...+ |+......+...+.+.|++++|+..|+.... .|+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~ 171 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAG 171 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHH
Confidence 002234456778889999999999999887643 5444777777889999999999999986654 2233
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHH
Q 003451 735 ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--QNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKL 810 (819)
Q Consensus 735 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 810 (819)
..+..++.++...|++++|+..+++.......|. ...+...+.++.+.|+.++|...|+++...+|. ......|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence 3788899999999999999999999986433263 457788999999999999999999999999998 4444444
No 119
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=1e-08 Score=89.92 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=89.2
Q ss_pred HHHHHHHHCCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 685 DVLREILAKGIKP-DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 685 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
..+++++.. .| +...+..+...+...|++++|...|+++.+... .+...|..++.++...|++++|+..++++++.
T Consensus 8 ~~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344555543 33 356677778888888999999999988887432 26677888888888999999999999998874
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 764 GCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 764 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
.| +...+..++.+|...|++++|+..++++++++|.++.
T Consensus 85 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 85 --DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp --STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 45 6788888899999999999999999999988887544
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.80 E-value=3e-07 Score=87.52 Aligned_cols=185 Identities=11% Similarity=-0.032 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-H-HHHH
Q 003451 558 NELTYSSLLHAYANGREIDQMLALSEEIYSGIIEP--HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPD-I-PTLN 633 (819)
Q Consensus 558 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~ 633 (819)
+...+..+...+...|++++|+..++++++..... ....+..++.++.+.|++++|...|+++++...... . ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44556667778999999999999999999854322 246788889999999999999999999998643321 1 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 003451 634 AMISIYGR------------------RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGI 695 (819)
Q Consensus 634 ~l~~~~~~------------------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 695 (819)
.+..++.. .|++++|+..|+++.+.. +-+...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----------HHHHHHH-----
Confidence 55555543 578999999999999863 2233333221111 0011111
Q ss_pred CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 696 KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 696 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
......++..|.+.|++++|+..|+++++. .|+. ..+..++.++.+.|++++|++.++.+...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 112235667888999999999999999884 3332 46888999999999999999999998874
No 121
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=1.2e-07 Score=93.97 Aligned_cols=168 Identities=11% Similarity=-0.033 Sum_probs=128.8
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH-H
Q 003451 591 EPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYN-T 669 (819)
Q Consensus 591 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~ 669 (819)
+.+...+..++..+...|++++|...|+++.+... .+...+..+...+.+.|++++|...++++... .|+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence 44455666777778888888888888888887642 36778888888999999999999999888765 35554332 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 003451 670 LMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADS 748 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g 748 (819)
....+...++.++|...+++.+... +.+...+..+...|...|++++|...|.++++..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 3334667778888899999888763 3368888899999999999999999999998843221 2467888999999999
Q ss_pred ChHHHHHHHHHHHH
Q 003451 749 LFVEALDVVRYMIK 762 (819)
Q Consensus 749 ~~~~A~~~~~~~~~ 762 (819)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999998888764
No 122
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=6.4e-08 Score=88.09 Aligned_cols=161 Identities=11% Similarity=-0.021 Sum_probs=116.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHh
Q 003451 598 KTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYM-YSR 676 (819)
Q Consensus 598 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 676 (819)
...+..+...|++++|...|++..+.. +.+...+..+...+...|++++|+..++++.+.. |+...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 345556677788888888887766543 2356778888888888899999998888877653 354443332222 222
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 003451 677 SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALD 755 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~ 755 (819)
.++..+|+..+++.++.. +.+...+..+..++...|++++|...|+++++....+ +...+..++.++...|+.++|+.
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 233345788888888753 2257888889999999999999999999998853322 34578888999999999999999
Q ss_pred HHHHHHH
Q 003451 756 VVRYMIK 762 (819)
Q Consensus 756 ~~~~~~~ 762 (819)
.+++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=1.5e-07 Score=79.68 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003451 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 744 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 744 (819)
..+...+..|.+.|++++|++.|+++++.. +.+...|..++.+|.+.|++++|+..+++.++... .+...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 457778889999999999999999998764 33688899999999999999999999999988432 2567889999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003451 745 AADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG 778 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 778 (819)
...|++++|++.++++++ +.| +...+..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHh
Confidence 999999999999999998 467 56666666554
No 124
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.77 E-value=9.9e-08 Score=85.63 Aligned_cols=108 Identities=8% Similarity=-0.001 Sum_probs=70.3
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
...|..+...+.+.|++++|++.|++.++... -+...|..++.+|...|++++|+..++++++. .| +...|..++.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45566666666667777777777776666321 14556666777777777777777777777663 34 4666667777
Q ss_pred HHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHH
Q 003451 778 GYCKLNQRYEAITFVNNLSKLDPHVTKELECK 809 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~ 809 (819)
+|...|++++|+..++++++++|++....+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 77777777777777777777777666544443
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.76 E-value=4.3e-07 Score=85.61 Aligned_cols=143 Identities=13% Similarity=0.045 Sum_probs=97.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA 746 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 746 (819)
+..++..+...|++++|++.|++++ .++...|..++.+|...|++++|.+.+++..+.. ..+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4455666777777777777777663 4466777777777777777777777777777642 2245677777777777
Q ss_pred cCChHHHHHHHHHHHHcC--------------CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHH
Q 003451 747 DSLFVEALDVVRYMIKQG--------------CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLS 811 (819)
Q Consensus 747 ~g~~~~A~~~~~~~~~~~--------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~ 811 (819)
.|++++|+..++++++.. ..| ....+..++.+|.+.|++++|...++++.+.+|.+........+
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 163 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM 163 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHH
Confidence 777777777777777632 011 12667777777777777777777777777777766554444444
Q ss_pred HHH
Q 003451 812 DRI 814 (819)
Q Consensus 812 ~~l 814 (819)
..+
T Consensus 164 ~~~ 166 (213)
T 1hh8_A 164 ECV 166 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=9.2e-08 Score=87.17 Aligned_cols=126 Identities=7% Similarity=0.051 Sum_probs=96.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 003451 675 SRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS-YAADSLF--V 751 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~--~ 751 (819)
...|++++|+..+++.++.. +.+...|..++..|...|++++|...|+++.+... .+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888888888887653 33677888888888888999999998888887432 256677788888 7788888 9
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 752 EALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 752 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+|+..++++++. .| +...+..++..|...|++++|...++++.+.+|.+..
T Consensus 99 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 999999998874 45 5778888888999999999999999999998887754
No 127
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.73 E-value=2.5e-07 Score=102.11 Aligned_cols=152 Identities=7% Similarity=-0.137 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 003451 608 DLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVL 687 (819)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 687 (819)
|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34445555555544432 1234555555555556666666666666655542 334455555666666666666666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHc
Q 003451 688 REILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD---SLFVEALDVVRYMIKQ 763 (819)
Q Consensus 688 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 763 (819)
++.++.. +.+...+..+..+|.+.|++++|.+.++++.+... .+...+..++.++... |++++|.+.++++++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6665542 22355555666666666666666666666655321 1344555566666666 6666666666666553
No 128
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.71 E-value=8.6e-06 Score=80.50 Aligned_cols=195 Identities=8% Similarity=0.033 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 003451 610 LMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQ--MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN-FARAEDV 686 (819)
Q Consensus 610 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 686 (819)
++++..+++.+....+ .+..+|+.-...+.+.+ .++++++.++.+.+.. +-+..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4567777777776543 36777777666666666 4788888888888764 5577788888888788887 6888999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 003451 687 LREILAKGIKPDIISYNTVIFAYCRN--------------GRMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD----- 747 (819)
Q Consensus 687 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----- 747 (819)
++++++..+. |...|+.....+... +.++++++.+++++..... |..+|+.+-..+...
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 9888876533 677777776666655 4578899999998874322 566776666666555
Q ss_pred ------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHH
Q 003451 748 ------SLFVEALDVVRYMIKQGCKPNQNTYNSIVDGY-----CKLNQRYEAITFVNNLSKLDPHVTKELECKLSD 812 (819)
Q Consensus 748 ------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 812 (819)
+.++++++.++++++ ..||. .|..+..++ ...|..++...++.++.+++|-- ...|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r-~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG-HHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch-hhHHHHHHH
Confidence 458899999999998 56754 344333322 25688889999999999999976 445555544
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.70 E-value=4.8e-07 Score=81.22 Aligned_cols=130 Identities=17% Similarity=0.118 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003451 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 744 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 744 (819)
..+..++..+...|++++|...|++.++.. +.+...+..++.++...|++++|.+.+++..+.. ..+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345667777888888888888888888753 2357788888888888888888888888888752 22566788888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH--HHHHHhcCCHhHHHHHHHHhhhc
Q 003451 745 AADSLFVEALDVVRYMIKQGCKP-NQNTYNSI--VDGYCKLNQRYEAITFVNNLSKL 798 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~ 798 (819)
...|++++|+..++++++. .| +...+..+ +..+.+.|++++|+..+++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 8889999999999888874 34 55555433 44477888899998888876543
No 130
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.69 E-value=6.2e-06 Score=82.03 Aligned_cols=163 Identities=11% Similarity=-0.001 Sum_probs=119.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC-CC----HHHHHH
Q 003451 600 LILVYSKSDLLMDTERAFLELKKKGF-SPDI----PTLNAMISIYGRRQMVAKTNEILHFMNDSGFT-PS----LTTYNT 669 (819)
Q Consensus 600 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 669 (819)
.+..+...|++++|...+++..+... .++. ..+..+...+...+++++|++.++++.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777888888888888776321 1121 12334666677788999999999988874222 22 236889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 003451 670 LMYMYSRSENFARAEDVLREILA----K-GIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPD-VITYN 738 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~-~~~~~ 738 (819)
++.+|...|++++|+.+|+++++ . +..+. ..+|..++..|.+.|++++|.+.+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999883 1 11112 457888999999999999999999988762 22222 46888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHH
Q 003451 739 TFVASYAADSL-FVEALDVVRYMIK 762 (819)
Q Consensus 739 ~l~~~~~~~g~-~~~A~~~~~~~~~ 762 (819)
.++.++.+.|+ +++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999999875
No 131
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.67 E-value=2e-07 Score=87.15 Aligned_cols=161 Identities=12% Similarity=0.015 Sum_probs=107.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhHHHHHHHHHHhcCC
Q 003451 640 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAK----GIKP-DIISYNTVIFAYCRNGR 714 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~ 714 (819)
...|++++|.+.++.+... ......++..+...+...|++++|...+++.++. +..+ ....+..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3457777777754444332 1234456777788888888888888888877641 1111 25667778888888888
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcC
Q 003451 715 MKEASRIFSEMRDS----GLVP--DVITYNTFVASYAADSLFVEALDVVRYMIKQGCK-PN----QNTYNSIVDGYCKLN 783 (819)
Q Consensus 715 ~~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g 783 (819)
+++|.+.+++..+. +-.+ ....+..++..+...|++++|...++++++..-. .+ ..++..++..+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888887763 1111 1235778888888889999998888887742111 12 234678888888999
Q ss_pred CHhHHHHHHHHhhhcCCC
Q 003451 784 QRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 784 ~~~~A~~~~~~~~~~~p~ 801 (819)
++++|...++++.++...
T Consensus 162 ~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999888876443
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=3.5e-07 Score=77.69 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=77.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
...|..++..+.+.|++++|...|++.++.. ..+...|..++.++...|++++|+..++++++. .| +...|..++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 4456677777888888888888888887742 225677888888888888888888888888874 45 6778888888
Q ss_pred HHHhcCCHhHHHHHHHHhhhcC
Q 003451 778 GYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
+|...|++++|+..++++++++
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888888888
No 133
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.66 E-value=9e-06 Score=80.69 Aligned_cols=221 Identities=14% Similarity=0.080 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHH
Q 003451 576 DQMLALSEEIYSGIIEPHAVLLKTLILVYSKSD-LLMDTERAFLELKKKGFSPDIPTLNAMISIYGRR-Q-MVAKTNEIL 652 (819)
Q Consensus 576 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~ 652 (819)
++|+.++++++..+ +.+..+++.-..++...| .+++++.+++.++.... .+..+|+.-...+.+. + +++++++.+
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 34444444444432 223333333333344444 35566666666655432 2455555555444444 4 566777777
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-------HHH
Q 003451 653 HFMNDSGFTPSLTTYNTLMYMYSRSENFA--------RAEDVLREILAKGIKPDIISYNTVIFAYCRNGR-------MKE 717 (819)
Q Consensus 653 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~ 717 (819)
+.+.+.. +-+..+|+.-..++.+.|.++ +++++++++++.... |...|+.....+.+.++ +++
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 7776653 445566666555555555444 777777777765432 66677776666666665 577
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHcC----C-CCCHHHH
Q 003451 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLF--------------------VEALDVVRYMIKQG----C-KPNQNTY 772 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~-~p~~~~~ 772 (819)
+++.+++++..... |...|+.+...+.+.|+- .+..+....+...+ . .++...+
T Consensus 227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 77777777764222 555666666666655542 22333333332211 1 2356677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhh-hcCCC
Q 003451 773 NSIVDGYCKLNQRYEAITFVNNLS-KLDPH 801 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~ 801 (819)
.-+++.|...|+.++|.+.++.+. +.+|-
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 778888888888888888888876 44554
No 134
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.66 E-value=1.7e-07 Score=81.67 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=79.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
...+..+...+.+.|++++|...|+++.+... .+...|..++.++...|++++|+..++++++. .| +...+..++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHH
Confidence 45566677778888888888888888877432 25667778888888888888888888888874 45 6677788888
Q ss_pred HHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 778 GYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+|...|++++|+..++++++.+|.++.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 888888888888888888888876643
No 135
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.65 E-value=2e-07 Score=78.32 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003451 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG 778 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 778 (819)
.+..++..+.+.|++++|...|+++++. .| +...|..++.++...|++++|+..++++++. .| +...+..++.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVS 94 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 4556778888999999999999999884 33 6678889999999999999999999999984 56 67888899999
Q ss_pred HHhcCCHhHHHHHHHHhhhcCCCCC
Q 003451 779 YCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 779 ~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
|...|++++|+..++++++.+|...
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999988764
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.64 E-value=3.9e-06 Score=83.49 Aligned_cols=164 Identities=10% Similarity=-0.029 Sum_probs=118.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC---CCC--HHHHH
Q 003451 599 TLILVYSKSDLLMDTERAFLELKKKGFSPD-----IPTLNAMISIYGRRQMVAKTNEILHFMNDSGF---TPS--LTTYN 668 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~~ 668 (819)
..+..+...|++++|...+.+..+...... ...+..+...+...|++++|++.+++..+... .+. ..+++
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 345556677777777777777665432211 12234456667788899999999998875321 122 44788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH---HCCC-CC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 003451 669 TLMYMYSRSENFARAEDVLREIL---AKGI-KP--DIISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVP-DVITY 737 (819)
Q Consensus 669 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~ 737 (819)
.++..|...|++++|..++++++ +... .+ ...++..++..|...|++++|...+++..+. +... -..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999999999999999987 3211 11 1268889999999999999999999998763 1111 15688
Q ss_pred HHHHHHHHhcCChHHH-HHHHHHHHH
Q 003451 738 NTFVASYAADSLFVEA-LDVVRYMIK 762 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A-~~~~~~~~~ 762 (819)
..++.+|...|++++| ...++++++
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 8999999999999999 777888764
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.64 E-value=5.2e-07 Score=78.76 Aligned_cols=102 Identities=9% Similarity=0.039 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003451 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVA 742 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~ 742 (819)
...+..+...+.+.|++++|+..|++++... +.+...|..+..+|...|++++|++.|+++.+. .| +...|..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 3467778888889999999999999998763 236888888999999999999999999999884 33 4568888999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003451 743 SYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 770 (819)
+|...|++++|+..++++++. .|+..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999999884 56654
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.62 E-value=6.5e-07 Score=90.91 Aligned_cols=131 Identities=9% Similarity=-0.001 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003451 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--------------IISYNTVIFAYCRNGRMKEASRIFSEMRDSG 729 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 729 (819)
...+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..++++++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34566677777777777777777777776432211 4778888888888888888888888888742
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHH-HHHHHHhhh
Q 003451 730 LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEA-ITFVNNLSK 797 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 797 (819)
..+...|..++.+|...|++++|+..++++++. .| +..++..++.++.+.|++++| ...++++..
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 225667888888888888888888888888874 45 677788888888888888888 445666543
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.61 E-value=3.4e-07 Score=77.67 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=69.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--------H
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN--------Q 769 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~ 769 (819)
...+..++..+.+.|++++|++.|+++++. .| +...|..++.+|...|++++|+..++++++. .|+ .
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a 83 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHH
Confidence 345556677777777777777777777763 33 4556777777777777777777777777653 221 2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 770 NTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 770 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
.+|..++.++...|++++|++.++++++..|++
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 466677777888888888888888887776653
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=2.4e-07 Score=91.44 Aligned_cols=196 Identities=8% Similarity=-0.061 Sum_probs=131.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 003451 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMY 672 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 672 (819)
+...+..++..+...|++++|...|++.++.. +.+...+..+...|.+.|++++|++.+++..+.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556677778888888888888888888764 2367888889999999999999999999988764 456778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 003451 673 MYSRSENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFV 751 (819)
Q Consensus 673 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 751 (819)
+|...|++++|...|+++.+.+ |+ ...+...+....+ ..++... ..........+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 9999999999999999887642 21 1111111111111 1222222 222223344444444444332 368899
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc-CCHhHHHHHHHHhhhcCC
Q 003451 752 EALDVVRYMIKQGCKPNQ-NTYNSIVDGYCKL-NQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 752 ~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p 800 (819)
+|++.++++++ ..|+. .....+...+.+. +++++|.++|+++.+..+
T Consensus 153 ~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 153 RELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 99999998887 46643 4444555555555 678899999998877543
No 141
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.61 E-value=6.4e-07 Score=77.36 Aligned_cols=101 Identities=11% Similarity=-0.004 Sum_probs=74.8
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003451 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 776 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 776 (819)
+...|..++..+...|++++|...|++.++... .+...+..++.++...|++++|+..++++++. .| +...+..++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 466677777777777777777777777776422 24567777777778888888888888887774 34 567777788
Q ss_pred HHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 777 DGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.+|...|++++|+..++++++.+|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888877776
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.59 E-value=1.8e-05 Score=78.57 Aligned_cols=231 Identities=6% Similarity=-0.028 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcC-C-CHHHHHHHH
Q 003451 541 EQSEKIFAEMKGGRCKPNELTYSSLLHAYANGR-EIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKS-D-LLMDTERAF 617 (819)
Q Consensus 541 ~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~ 617 (819)
++|++++++++..+ +-+..+|+.--..+...+ .+++++..++.++... +.+..++..-..++... + ++++++.++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 44455554444432 223333444333333344 3555555555555443 23333333333333333 3 455555566
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-------HHH
Q 003451 618 LELKKKGFSPDIPTLNAMISIYGRRQMVA--------KTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN-------FAR 682 (819)
Q Consensus 618 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~ 682 (819)
+++++.... +..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+. +++
T Consensus 149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 655554322 4445544443333333333 7777777777754 4566677777777776665 688
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCCHHHH
Q 003451 683 AEDVLREILAKGIKPDIISYNTVIFAYCRNGRM--------------------KEASRIFSEMRDSG-----LVPDVITY 737 (819)
Q Consensus 683 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~g-----~~p~~~~~ 737 (819)
+++.+++++... +-|...|+.+-..+.+.|+. .+..++..++...+ -.++...+
T Consensus 227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 888888888764 23677787777777666653 23333333333221 13567788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 738 NTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
..++..|...|+.++|.++++.+.+. ..| ....|...+.
T Consensus 306 ~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 306 EYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHHHH
Confidence 89999999999999999999998754 456 4455554443
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.59 E-value=1.2e-06 Score=74.60 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 003451 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYA 745 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 745 (819)
.+..++..+...|++++|...++++.... +.+...+..++.++...|++++|.+.+++..+.. ..+...+..++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 34444455555555555555555555432 1234445555555555555555555555555431 112344555555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 003451 746 ADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 784 (819)
..|++++|...++++++. .| +...+..++.++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALEL--DPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhc
Confidence 555555555555555542 23 34444455555544444
No 144
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=8.6e-07 Score=75.94 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=54.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
...|..++..+...|++++|.+.++++.+.. ..+...+..++.++...|++++|+..++++++. .| +...+..++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 4444555555555555555555555555421 113445555555555555555555555555553 22 4455555555
Q ss_pred HHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 778 GYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+|...|++++|...++++.+.+|.+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 119 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKE 119 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchH
Confidence 555555555555555555555555433
No 145
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.59 E-value=2.2e-07 Score=79.96 Aligned_cols=103 Identities=13% Similarity=0.005 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 003451 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-------------VITYNTFVASYAADSLFVEALDVVRYMIKQ---- 763 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 763 (819)
.+......+.+.|++++|+..|++.++. .|+ ...|..++.++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3445555666667777777777776662 332 238888899999999999999999999883
Q ss_pred -CCCC-CHHHH----HHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 764 -GCKP-NQNTY----NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 764 -~~~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
-+.| +...| ...+.++...|++++|+..|+++++++|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 0167 45778 899999999999999999999999998876543
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.58 E-value=1e-06 Score=73.41 Aligned_cols=104 Identities=16% Similarity=0.091 Sum_probs=82.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
...+..++..+...|++++|...+++..+.. ..+...+..++.++...|++++|+..++++++. .| +...+..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 4566777778888888888888888887742 225667888888888888888888888888874 34 6778888888
Q ss_pred HHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 778 GYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++...|++++|...++++.+.+|.+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 108 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQL 108 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHH
Confidence 8888999999999999998888877443
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=2.1e-06 Score=72.40 Aligned_cols=104 Identities=16% Similarity=0.270 Sum_probs=60.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDG 778 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 778 (819)
...|..++..+...|++++|.++++++.+.. ..+..++..++..+...|++++|+.+++++.+.. ..+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455555556666666666666666665532 1234455566666666666666666666666531 2245556666666
Q ss_pred HHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 779 YCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 779 ~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
|...|++++|...++++.+.+|.+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~ 112 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAE 112 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence 66666666666666666666665533
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=1.2e-06 Score=73.89 Aligned_cols=116 Identities=13% Similarity=0.211 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003451 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
...+..++..+...|++++|.++++++.+.. +.+...+..++..+...|++++|..+++++.+.. ..+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678889999999999999999999999763 3467889999999999999999999999998853 3367788999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 003451 744 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLN 783 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 783 (819)
+...|++++|...++++.+. .| +...+..++..+...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999984 45 6677777777776544
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.57 E-value=7.8e-07 Score=76.22 Aligned_cols=120 Identities=11% Similarity=0.039 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003451 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 740 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 740 (819)
+.+...+..++..+...|++++|.+.|+++++.. +.+...+..++.++...|++++|.+.++++.+.. ..+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 3456678899999999999999999999999863 3368889999999999999999999999999853 2367789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 003451 741 VASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQ 784 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 784 (819)
+.++...|++++|+..++++++. .| +...+..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999984 45 56778888888877664
No 150
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.56 E-value=7.9e-07 Score=75.38 Aligned_cols=108 Identities=10% Similarity=0.116 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 003451 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSG--LVPD----VITYN 738 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--~~p~----~~~~~ 738 (819)
..+..++..+.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|++.+++.++.. ...+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356678888888999999999999888753 2357888888889999999999999998887631 1112 13677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003451 739 TFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI 775 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 775 (819)
.++.++...|++++|++.+++.++ ..||+.+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 888889999999999999999887 45776665444
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.56 E-value=9.3e-07 Score=72.92 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=87.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 003451 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP--NQNTYNSI 775 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l 775 (819)
+...+..++..+...|++++|...++++.+.. ..+...+..++..+...|++++|+..++++++.. .. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 45667778888889999999999999988753 2356788889999999999999999999999852 22 47888899
Q ss_pred HHHHHhc-CCHhHHHHHHHHhhhcCCCCC
Q 003451 776 VDGYCKL-NQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 776 ~~~~~~~-g~~~~A~~~~~~~~~~~p~~~ 803 (819)
+.+|... |++++|.+.++++.+..|.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 9999999 999999999999999988764
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=2.2e-06 Score=79.83 Aligned_cols=156 Identities=10% Similarity=-0.007 Sum_probs=104.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 003451 606 KSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDS----GFTP-SLTTYNTLMYMYSRSENF 680 (819)
Q Consensus 606 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~ 680 (819)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..+. +..+ ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644443321 1224556677777777778888887777776652 1111 234577788888889999
Q ss_pred HHHHHHHHHHHHC----CCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCC
Q 003451 681 ARAEDVLREILAK----GIKP--DIISYNTVIFAYCRNGRMKEASRIFSEMRDSG-LVPDV----ITYNTFVASYAADSL 749 (819)
Q Consensus 681 ~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~----~~~~~l~~~~~~~g~ 749 (819)
++|.+.+++.++. +-.+ ....+..+...+...|++++|...+++..+.. -..+. .++..++..+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999988887642 1111 24567778888889999999999998887521 01122 246788888999999
Q ss_pred hHHHHHHHHHHHH
Q 003451 750 FVEALDVVRYMIK 762 (819)
Q Consensus 750 ~~~A~~~~~~~~~ 762 (819)
+++|...++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988875
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=1.5e-06 Score=76.13 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=77.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHH
Q 003451 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTY 772 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~ 772 (819)
+...+..++..+...|++++|.+.|++..+ ..|+ ...+..++.++...|++++|+..++++++. .| +...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 456666777777777777777777777776 3455 456777777888888888888888888774 34 56777
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 773 NSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
..++.+|...|++++|...++++++.+|.+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 135 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 788888888888888888888888888776443
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.54 E-value=3.1e-06 Score=75.78 Aligned_cols=130 Identities=12% Similarity=0.039 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 003451 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAY 709 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 709 (819)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...+++.++.. +.+...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777888888888888888887753 4567788888888899999999999999888753 33577888888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 003451 710 CRNGRMKEASRIFSEMRDSGLVPDVITYN--TFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 710 ~~~g~~~~A~~~~~~~~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
...|++++|.+.++++.+.... +...+. ..+..+...|++++|+..+++..+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999998875322 444453 344447778899999988887654
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.52 E-value=2.3e-05 Score=77.45 Aligned_cols=155 Identities=12% Similarity=0.115 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-HHHHHHH
Q 003451 645 VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSE--NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR-MKEASRI 721 (819)
Q Consensus 645 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 721 (819)
+++++.+++.+.... +-+..+|+.-..++...| ++++++.+++++++.... |...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 678899999988764 567888998888888888 489999999999987533 78888888888888898 6999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc----
Q 003451 722 FSEMRDSGLVPDVITYNTFVASYAAD--------------SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKL---- 782 (819)
Q Consensus 722 ~~~~~~~g~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---- 782 (819)
++++++..+. |..+|+.....+... +.++++++.+++++. ..| |...|+.+...+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCcc
Confidence 9999986544 777888877777665 458999999999998 457 788888777777665
Q ss_pred -------CCHhHHHHHHHHhhhcCCCCCH
Q 003451 783 -------NQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 783 -------g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+.++++++.++++++..|++..
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKW 273 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccch
Confidence 4689999999999999998843
No 156
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.51 E-value=3.2e-06 Score=80.93 Aligned_cols=140 Identities=11% Similarity=0.004 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhHHHHHHHH
Q 003451 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD--IISYNTVIFA 708 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~ 708 (819)
....++..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..+
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 34456677888999999999999887653 555466667778899999999999998665531 121 3467788899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003451 709 YCRNGRMKEASRIFSEMRDSGLVPD--VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSI 775 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 775 (819)
+...|++++|+..|++.......|. .......+.++.+.|+.++|..+++++.+. .|+...+..|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 9999999999999999885332254 347778888999999999999999999984 5665544444
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.51 E-value=8.6e-07 Score=79.19 Aligned_cols=69 Identities=14% Similarity=0.060 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 735 ITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 735 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
..|..++.+|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..++++++++|++...
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 133 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH
Confidence 47888888899999999999999999884 56 67888899999999999999999999999999988634
No 158
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.50 E-value=8.6e-07 Score=77.56 Aligned_cols=99 Identities=11% Similarity=-0.006 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003451 663 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
+...+..+...+...|++++|+..|++++... +.+...|..+..+|...|++++|++.|+++++... .+...+..++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHH
Confidence 44567778888899999999999999988763 33688888899999999999999999999988432 25568888999
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003451 743 SYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+|...|++++|+..++++++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999873
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=2.1e-06 Score=73.10 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=92.9
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 003451 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIV 776 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 776 (819)
+...+..++..+...|++++|...++++.+.. ..+...+..++..+...|++++|+..++++++. .| +...+..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 45678888899999999999999999998853 236778899999999999999999999999985 45 688899999
Q ss_pred HHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 777 DGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 777 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
..|...|++++|...++++.+.+|.+....
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 117 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYK 117 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHH
Confidence 999999999999999999999999875443
No 160
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.46 E-value=1.2e-06 Score=79.68 Aligned_cols=121 Identities=7% Similarity=0.097 Sum_probs=90.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH-HHhcCCH--H
Q 003451 640 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA-YCRNGRM--K 716 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 716 (819)
...|++++|++.++...+.. +.+...+..++.+|...|++++|...|+++++.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34577788888888777653 4566778888888888889999999888888753 2357777778877 7788888 9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 717 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 717 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+|...++++.+... .+...+..++..+...|++++|+..++++++.
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999988887532 24667888888888999999999999998874
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.46 E-value=2.8e-06 Score=72.00 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003451 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY 744 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 744 (819)
..+..++..+.+.|++++|+..|++.++.. +.+...|..++.+|.+.|++++|+..++++++... .+...|..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 456677788888899999999998888753 33678888888889999999999999998888432 2466888888889
Q ss_pred HhcCChHHHHHHHHHHHHc
Q 003451 745 AADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 745 ~~~g~~~~A~~~~~~~~~~ 763 (819)
...|++++|+..++++++.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999988873
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.44 E-value=1.3e-06 Score=86.12 Aligned_cols=166 Identities=6% Similarity=-0.091 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 003451 628 DIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIF 707 (819)
Q Consensus 628 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 707 (819)
+...+..+...+.+.|++++|+..+++..+.. +.+...|..++.+|.+.|++++|+..++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677888899999999999999999998863 4477889999999999999999999999999863 235888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHh
Q 003451 708 AYCRNGRMKEASRIFSEMRDSGLVPDV-ITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRY 786 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 786 (819)
+|...|++++|...|+++.+. .|+. ..+...++...+. .++..+.. ..+.....+..+...+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRI---AKKKRWNS-IEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHH---HHHHHHHH-HHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHH---HHHHHHHH-HHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 999999999999999998873 2211 0111112221111 12222222 2222244466666666544 379999
Q ss_pred HHHHHHHHhhhcCCCCC
Q 003451 787 EAITFVNNLSKLDPHVT 803 (819)
Q Consensus 787 ~A~~~~~~~~~~~p~~~ 803 (819)
+|++.++++.+.+|.+.
T Consensus 153 ~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDG 169 (281)
T ss_dssp HHHTTTSGGGTTTSCHH
T ss_pred HHHHHHHhhhccccchh
Confidence 99999999999988653
No 163
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.44 E-value=2.8e-07 Score=76.97 Aligned_cols=101 Identities=13% Similarity=-0.001 Sum_probs=70.1
Q ss_pred cCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHH
Q 003451 712 NGRMKEASRIFSEMRDSGL-VP-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~~g~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 788 (819)
.|++++|+..|+++++.+. .| +...+..++.+|...|++++|+..++++++. .| +..++..++.+|...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 5777888888888877431 12 2346778888888888888888888888874 45 577778888888888888888
Q ss_pred HHHHHHhhhcCCCCCHH-HHHHHHHHH
Q 003451 789 ITFVNNLSKLDPHVTKE-LECKLSDRI 814 (819)
Q Consensus 789 ~~~~~~~~~~~p~~~~~-~~~~l~~~l 814 (819)
+..++++++..|.++.. .|...+..+
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 88888888888877554 333444433
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.44 E-value=3.2e-06 Score=78.44 Aligned_cols=130 Identities=14% Similarity=0.006 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----------------IISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
..+..++..+...|++++|+..|+++++.... + ...|..+..+|...|++++|+..++++++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIH-TEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTT-CTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566677777788888888888887764211 2 267778888888888888888888888874
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHH-HHHHHhhhc
Q 003451 729 GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI-TFVNNLSKL 798 (819)
Q Consensus 729 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 798 (819)
. ..+...+..++.++...|++++|+..++++++. .| +..++..+..++...|+.+++. ..++++...
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2 225667888888888888888888888888874 45 6677778888887777777776 455555444
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.44 E-value=1.7e-06 Score=73.72 Aligned_cols=101 Identities=18% Similarity=0.135 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C---HHHHHH
Q 003451 702 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDV---ITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-N---QNTYNS 774 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~~~~ 774 (819)
+..++..+...|++++|.+.|+++.+.... +. ..+..++.++...|++++|+..++++++. .| + ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHH
Confidence 344566677778888888888887764221 22 46677777888888888888888888774 34 3 566777
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 775 IVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 775 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
++.+|...|++++|...++++.+..|+++..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 8888888888888888888888888776544
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.42 E-value=4.1e-07 Score=84.59 Aligned_cols=132 Identities=11% Similarity=0.027 Sum_probs=98.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C---C-----------HH
Q 003451 671 MYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV-P---D-----------VI 735 (819)
Q Consensus 671 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p---~-----------~~ 735 (819)
+......|+++++.+.|+...... ......+..+...+...|++++|...|++.++.... + . ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 344455667777777776443321 113567778889999999999999999999984221 1 0 26
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
.+..++.++...|++++|+..++++++. .| +...+..++.+|...|++++|+..++++++++|.+...
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 8889999999999999999999999985 45 78899999999999999999999999999999988554
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.39 E-value=1.1e-05 Score=67.07 Aligned_cols=111 Identities=14% Similarity=0.040 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003451 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
...+..++..+...|++++|...++++.... +.+...+..++.++...|++++|...+++..+... .+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 3456677777888888888888888887653 23577788888888888888888888888887432 256678888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003451 744 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG 778 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 778 (819)
+...|++++|...++++.+. .| +...+..+...
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH--EANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHh
Confidence 88888888888888888873 45 45555555443
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.39 E-value=1.6e-06 Score=77.32 Aligned_cols=136 Identities=16% Similarity=0.137 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 003451 666 TYNTLMYMYSRSENFARAEDVLREILAKGIK-PD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGL-VPD----VI 735 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~----~~ 735 (819)
++..+...|...|++++|+..+++.++.... .+ ..++..+...+...|++++|.+.+++..+... ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4666777777888888888888777643100 11 24677788888888999999988888776210 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIKQ----GCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.+..++..+...|++++|+..++++++. +..+ ....+..++..|...|++++|.+.++++.+....
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999888753 1111 2456778899999999999999999998876443
No 169
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=1.4e-06 Score=75.69 Aligned_cols=98 Identities=8% Similarity=-0.094 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003451 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
...+..+...+.+.|++++|+..|++++..+ +.+...|..+..+|...|++++|...|+++++... .+...+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHH
Confidence 3456667778888999999999999988763 23678888888999999999999999999888532 245678888889
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 003451 744 YAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~ 763 (819)
+...|++++|+..++++++.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998873
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=5.6e-06 Score=70.40 Aligned_cols=100 Identities=13% Similarity=0.181 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCC----HHHHH
Q 003451 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGC--KPN----QNTYN 773 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 773 (819)
..|..++..+...|++++|...++++.+.. ..+...+..++..+...|++++|+..++++++... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 344555555666666666666666665532 22445555666666666666666666666655310 011 45566
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhhcCC
Q 003451 774 SIVDGYCKLNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 774 ~l~~~~~~~g~~~~A~~~~~~~~~~~p 800 (819)
.++.+|...|++++|...++++.+..|
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 666666666666666666666666665
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=3.3e-06 Score=71.92 Aligned_cols=113 Identities=10% Similarity=0.115 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 003451 665 TTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGL--VPD----VITYN 738 (819)
Q Consensus 665 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~p~----~~~~~ 738 (819)
..+..++..+...|++++|...|+++++.. +.+...+..++..+...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456677777888888888888888887653 33577777888888888888888888888876421 122 56778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003451 739 TFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYC 780 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 780 (819)
.++.++...|++++|...++++.+. .|+...+..+..+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 8888888889999999999888874 456666666655443
No 172
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.36 E-value=6.1e-06 Score=71.04 Aligned_cols=101 Identities=9% Similarity=0.017 Sum_probs=81.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 003451 661 TPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTF 740 (819)
Q Consensus 661 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 740 (819)
+.+...+..++..+...|++++|...|++.+... +.+...|..++.++...|++++|...++++++... .+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 3466778888888888899999999888888753 23577888888888889999999999988887532 256688888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 003451 741 VASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+.++...|++++|+..++++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999999999999888763
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=1.6e-05 Score=69.42 Aligned_cols=113 Identities=9% Similarity=-0.018 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 003451 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITY 737 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 737 (819)
.+...+..+...+...|++++|...|++.++. .|+ ...|..+..+|...|++++|...+++..+.. ..+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 45667777888888888888888888888875 344 6777888888888899999999888888742 2256678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 003451 738 NTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGY 779 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 779 (819)
..++.++...|++++|+..++++++. .| +...+..+....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHH
Confidence 88888888999999999999988874 45 455555555443
No 174
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.34 E-value=6.2e-06 Score=73.70 Aligned_cols=99 Identities=10% Similarity=0.024 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003451 663 SLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVA 742 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 742 (819)
+...+..+...+...|++++|++.|++.++.. +.+...|..+..+|...|++++|+..++++++... -+...|..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34567777888888888888888888888753 23677888888888888888888888888887432 24668888888
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 003451 743 SYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~~ 763 (819)
+|...|++++|+..++++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888873
No 175
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.34 E-value=1.1e-05 Score=81.87 Aligned_cols=130 Identities=8% Similarity=-0.043 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPS---------------LTTYNTLMYMYSRSENFARAEDVLREILAK 693 (819)
Q Consensus 629 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 693 (819)
...+..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++++++.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455666666677777777777777766643 112 467888889999999999999999999886
Q ss_pred CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 003451 694 GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEA-LDVVRYMIK 762 (819)
Q Consensus 694 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 762 (819)
. +.+...|..+..+|...|++++|...|+++++. .| +..++..++.++...|++++| ...+++|.+
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 336888888999999999999999999999884 34 556788888888889998888 456666654
No 176
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.32 E-value=2.8e-05 Score=84.47 Aligned_cols=161 Identities=12% Similarity=0.042 Sum_probs=133.6
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 003451 642 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSEN----------FARAEDVLREILAKGIKPDIISYNTVIFAYCR 711 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 711 (819)
....++|++.++++.+.. +-+..+|+.-..++...|+ +++++++++++++...+ +..+|..-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 344578899999998864 4455667777777777777 99999999999987533 78899998899999
Q ss_pred cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc-----
Q 003451 712 NG--RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADS-LFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKL----- 782 (819)
Q Consensus 712 ~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----- 782 (819)
.| +++++++.++++.+.... +..+|+.-..++...| .++++++.++++++. .| |...|+..+..+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhccccc
Confidence 99 779999999999996444 7789999999999999 899999999999984 56 788999888887763
Q ss_pred ---------CCHhHHHHHHHHhhhcCCCCCHHHH
Q 003451 783 ---------NQRYEAITFVNNLSKLDPHVTKELE 807 (819)
Q Consensus 783 ---------g~~~~A~~~~~~~~~~~p~~~~~~~ 807 (819)
+++++|++.++++++.+|++....+
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~ 230 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWF 230 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHhhCCCCccHHH
Confidence 6689999999999999999988754
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=1.6e-06 Score=92.47 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=92.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003451 670 LMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL 749 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 749 (819)
++..+.+.|++++|++.++++++.. +.+...|..++.+|.+.|++++|.+.++++.+... -+...+..++.+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3345667788888888888888753 22578888888888888888888888888888422 245678888888888889
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHH--HHhcCCHhHHHHHHH-----------HhhhcCCC
Q 003451 750 FVEALDVVRYMIKQGCKP-NQNTYNSIVDG--YCKLNQRYEAITFVN-----------NLSKLDPH 801 (819)
Q Consensus 750 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~p~ 801 (819)
+++|++.++++++. .| +...+..++.+ +.+.|++++|++.++ ++.+.+|.
T Consensus 90 ~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 90 FRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999888888874 45 44566666666 778888889988888 66666554
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=1.3e-06 Score=88.74 Aligned_cols=155 Identities=6% Similarity=-0.113 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 003451 629 IPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFA 708 (819)
Q Consensus 629 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 708 (819)
...+..+...+.+.|++++|+..|++..+. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 344555666666677777777777766653 233221 122233333322211 1377888899
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH-HHhcCCHh
Q 003451 709 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDG-YCKLNQRY 786 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~ 786 (819)
|.+.|++++|+..++++++.. ..+...|..++.+|...|++++|+..++++++ +.| +..++..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998842 22567899999999999999999999999987 456 55666666666 33557788
Q ss_pred HHHHHHHHhhhcCCCCCHH
Q 003451 787 EAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 787 ~A~~~~~~~~~~~p~~~~~ 805 (819)
++...++++....|.++..
T Consensus 317 ~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHhhCCCCCCCCC
Confidence 8999999999998887653
No 179
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.28 E-value=5.7e-06 Score=89.83 Aligned_cols=188 Identities=10% Similarity=0.051 Sum_probs=147.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 003451 608 DLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQM----------VAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS 677 (819)
Q Consensus 608 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 677 (819)
...++|.+.++++++.... +..+|+.-...+...|+ ++++++.++.+.+.. +-+..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3345678888888876422 56667766666666666 899999999999864 56778899999999999
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------
Q 003451 678 E--NFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG-RMKEASRIFSEMRDSGLVPDVITYNTFVASYAAD------- 747 (819)
Q Consensus 678 g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~------- 747 (819)
| +++++++.++++++.+.. +...|+.-...+.+.| .++++++.++++++.... +..+|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 9 779999999999987533 7888988888888999 899999999999886443 677888888777663
Q ss_pred -------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhH------------HHHHHHHhhhcCCC
Q 003451 748 -------SLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYE------------AITFVNNLSKLDPH 801 (819)
Q Consensus 748 -------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~~~~~p~ 801 (819)
+.+++|++.++++++ ..| |...|..+...+.+.|+.++ |+..|+++.+.+|.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred ccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 568999999999998 457 78999999999988888665 44446666666554
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.22 E-value=1.1e-05 Score=67.56 Aligned_cols=93 Identities=14% Similarity=0.047 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP-DVITYNTFVASYA 745 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~ 745 (819)
+..++..+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|+++++. .| +...+..++.++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3455667778888888888888888753 235778888888888888888888888888874 33 4567778888888
Q ss_pred hcCChHHHHHHHHHHHH
Q 003451 746 ADSLFVEALDVVRYMIK 762 (819)
Q Consensus 746 ~~g~~~~A~~~~~~~~~ 762 (819)
..|++++|+..++++++
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 88888888888888876
No 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.20 E-value=1.6e-05 Score=84.44 Aligned_cols=122 Identities=10% Similarity=-0.003 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003451 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKPD--------------IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
.+..+...|.+.|++++|+..|+++++...... ...|..+..+|.+.|++++|+..++++++...
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS- 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-
Confidence 445555566666666666666666654311110 46677777777777788888877777777422
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHH
Q 003451 732 PDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAIT 790 (819)
Q Consensus 732 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 790 (819)
.+...|..++.+|...|++++|+..++++++ +.| +..++..++.++.+.|++++|.+
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456777777777777888888888887776 455 55667777777777777766653
No 182
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=9.2e-05 Score=78.42 Aligned_cols=166 Identities=7% Similarity=-0.080 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HhH
Q 003451 632 LNAMISIYGRRQMVAKTNEILHFMNDSG-FTPSL----TTYNTLMYMYSRSENFARAEDVLREILA----KGIKPD-IIS 701 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~ 701 (819)
+..++..|...|++++|.+.+..+...- ..++. .+.+.+...+...|++++|..++++... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3444555555555555555554443210 00111 1122223333344555555555555442 111111 344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC-CC-C--HH
Q 003451 702 YNTVIFAYCRNGRMKEASRIFSEMRDS--GLV--P-DVITYNTFVASYAADSLFVEALDVVRYMIKQ--GC-KP-N--QN 770 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~--p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~p-~--~~ 770 (819)
+..++..|...|++++|..+++++... +.. + ...++...+..|...|++++|..+++++... .+ .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 555556666666666666666555432 111 1 1124555555566666666666666555431 01 11 0 23
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 771 TYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 771 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
++..++..+...|++++|...+.++.+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344455555555666666655555543
No 183
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.18 E-value=2.1e-05 Score=67.53 Aligned_cols=112 Identities=6% Similarity=-0.054 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHH
Q 003451 678 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEA 753 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A 753 (819)
+++++|+++|++..+.| .++.. +...|...+.+++|.++|++..+.| +...+..++..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677777777777665 22322 5566666666777777777777653 45667777777776 6777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHhhhcCC
Q 003451 754 LDVVRYMIKQGCKPNQNTYNSIVDGYCK----LNQRYEAITFVNNLSKLDP 800 (819)
Q Consensus 754 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p 800 (819)
+.+++++.+.| +...+..|+..|.. .++.++|..+++++.+.+.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777777654 55666777777776 6777777777777777654
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.16 E-value=1.8e-05 Score=81.20 Aligned_cols=119 Identities=9% Similarity=0.055 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--------------C-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKG--------------I-KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLV 731 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 731 (819)
+..+...+.+.|++++|++.|+++++.- . ..+...|..+..+|.+.|++++|++.++++++. .
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~ 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--D 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--C
Confidence 4555666666677777777666665410 0 112455666666666666666666666666653 2
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHH
Q 003451 732 P-DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 732 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
| +...+..++.+|...|++++|+..++++++. .| +..++..+..++.+.++.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3456666666666666666666666666663 34 4555556666666555555554
No 185
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.16 E-value=6.2e-06 Score=70.74 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 003451 712 NGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL----------FVEALDVVRYMIKQGCKP-NQNTYNSIVDGYC 780 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 780 (819)
.+.+++|++.+++.++.... +...|..++.++...++ +++|+..++++++ +.| +..+|..++.+|.
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHH
Confidence 34456666666666653211 44555556666555544 4588888888887 456 5677888888887
Q ss_pred hcC-----------CHhHHHHHHHHhhhcCCCCC
Q 003451 781 KLN-----------QRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 781 ~~g-----------~~~~A~~~~~~~~~~~p~~~ 803 (819)
..| ++++|+..|+++++++|++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 764 78888888888888888763
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.16 E-value=1.7e-05 Score=65.14 Aligned_cols=97 Identities=10% Similarity=-0.014 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHH
Q 003451 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP---DVITYNTF 740 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p---~~~~~~~l 740 (819)
...+..++..+...|++++|...++++++.. +.+...+..++.++...|++++|.+.++++.+. .| +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHH
Confidence 3456667777888888888888888887653 235677778888888888888888888888874 33 36677888
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHc
Q 003451 741 VASYAAD-SLFVEALDVVRYMIKQ 763 (819)
Q Consensus 741 ~~~~~~~-g~~~~A~~~~~~~~~~ 763 (819)
+.++... |++++|++.++++++.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 8888888 8888888888888764
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.14 E-value=4.9e-05 Score=64.34 Aligned_cols=96 Identities=11% Similarity=0.086 Sum_probs=74.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 003451 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDI---ISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD----VITYNTF 740 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l 740 (819)
..++..+...|++++|...|+++++... .+. ..+..++.++...|++++|...++++.+. .|+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHH
Confidence 3456677888899999999998887532 123 57778888888999999999999998874 333 5678888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003451 741 VASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 768 (819)
+.++...|++++|+..++++++. .|+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~--~p~ 108 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ--YPG 108 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCC
Confidence 88899999999999999998874 454
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=1.8e-05 Score=70.44 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC---------CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 666 TYNTLMYMYSRSENFARAEDVLREILAK--------GI---------KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
.+...+..+.+.|++++|+..|++.+.. .. +.+...|..+..+|.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3455566666667777777776666643 00 113467888889999999999999999999885
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003451 729 GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 729 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 768 (819)
. ..+...|..++.+|...|++++|+..++++++ +.|+
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~ 129 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPA 129 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGG
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCC
Confidence 3 22567888999999999999999999999998 4574
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=9.6e-05 Score=78.29 Aligned_cols=56 Identities=9% Similarity=0.132 Sum_probs=31.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 003451 531 LAALARGGMWEQSEKIFAEMKGGRCKPNE----------------LTYSSLLHAYANGREIDQMLALSEEIY 586 (819)
Q Consensus 531 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~ 586 (819)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|...+.++.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566778888888888777765322110 124445555555566666555555544
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=2.3e-05 Score=83.29 Aligned_cols=126 Identities=9% Similarity=0.075 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHH
Q 003451 678 ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD--------------VITYNTFVAS 743 (819)
Q Consensus 678 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--------------~~~~~~l~~~ 743 (819)
+++++|.+.|+...+.. .-....|..+...|.+.|++++|...|+++++...... ...|..++.+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555665555444321 11356788889999999999999999999998422211 4789999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 744 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..++++++++|.+....
T Consensus 327 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~ 388 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 388 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999984 56 788999999999999999999999999999999886553
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.08 E-value=2e-05 Score=80.87 Aligned_cols=104 Identities=13% Similarity=0.131 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 003451 700 ISYNTVIFAYCRNGRMKEASRIFSEMRDS--------------GLVP-DVITYNTFVASYAADSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 700 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 764 (819)
..+..+...+.+.|++++|++.|+++++. ...| +...|..++.+|.+.|++++|+..++++++
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 301 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE-- 301 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--
Confidence 45677888899999999999999999861 0122 345888999999999999999999999998
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 765 CKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 765 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+.| +...|..++.+|...|++++|+..++++++++|.+...
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~ 343 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAI 343 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence 456 78899999999999999999999999999999987554
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.08 E-value=1.8e-05 Score=70.22 Aligned_cols=132 Identities=10% Similarity=-0.080 Sum_probs=90.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----Hh
Q 003451 631 TLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPS----LTTYNTLMYMYSRSENFARAEDVLREILAKGI-KPD----II 700 (819)
Q Consensus 631 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~ 700 (819)
++..+...+...|++++|.+.+++..+... ..+ ..++..+...+...|++++|.+.+++..+... ..+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 455556666666777777666666554210 011 13567778888888888888888888764210 011 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 701 SYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+..+...+...|++++|.+.+++..+. +..+ ...++..++..+...|++++|.+.++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6777888888999999999998888753 1111 124677888889999999999999998876
No 193
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.08 E-value=7.2e-06 Score=68.26 Aligned_cols=87 Identities=10% Similarity=0.033 Sum_probs=62.3
Q ss_pred hcCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 003451 676 RSENFARAEDVLREILAKGI--KPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEA 753 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A 753 (819)
..|++++|+..|+++++.+. +.+...+..++.+|...|++++|.+.|+++++.... +...+..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 35777888888888877531 223567778888888888888888888888875322 466778888888888888888
Q ss_pred HHHHHHHHHc
Q 003451 754 LDVVRYMIKQ 763 (819)
Q Consensus 754 ~~~~~~~~~~ 763 (819)
+..++++++.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888774
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.07 E-value=6.1e-05 Score=64.75 Aligned_cols=97 Identities=10% Similarity=-0.045 Sum_probs=77.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------C-----HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C
Q 003451 666 TYNTLMYMYSRSENFARAEDVLREILAKGIKP------D-----IISYNTVIFAYCRNGRMKEASRIFSEMRDS-----G 729 (819)
Q Consensus 666 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g 729 (819)
.+...+..+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34556677778888888888888888642220 2 238999999999999999999999999983 1
Q ss_pred CCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 730 LVPDV-ITY----NTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 730 ~~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+.|+. ..| ...+.++...|++++|+..|+++++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 16765 477 8999999999999999999999987
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=1.1e-05 Score=81.92 Aligned_cols=122 Identities=11% Similarity=0.006 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003451 664 LTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVAS 743 (819)
Q Consensus 664 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 743 (819)
...+..+...+.+.|++++|+..|++++.. .|+... +...|+++++...+. ...|..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345667777788888888888888888764 333221 223344444443321 1378899999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHH
Q 003451 744 YAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKEL 806 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 806 (819)
|.+.|++++|+..++++++. .| +...|..++.+|...|++++|+..++++++++|.+....
T Consensus 240 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~ 301 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999984 56 788999999999999999999999999999999876553
No 196
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.04 E-value=2e-05 Score=84.05 Aligned_cols=118 Identities=8% Similarity=-0.099 Sum_probs=59.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 003451 603 VYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFAR 682 (819)
Q Consensus 603 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 682 (819)
.+.+.|++++|...|++.++.. +.+...+..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 4455566666666666655542 1235555555556666666666666666555542 3344555555555666666666
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHH--HHhcCCHHHHHHHHH
Q 003451 683 AEDVLREILAKGIKPDIISYNTVIFA--YCRNGRMKEASRIFS 723 (819)
Q Consensus 683 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 723 (819)
|++.|+++++... .+...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665554321 123333333333 555555555555555
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.97 E-value=0.00023 Score=60.92 Aligned_cols=111 Identities=10% Similarity=-0.076 Sum_probs=83.5
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh----cCCHHHH
Q 003451 643 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCR----NGRMKEA 718 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 718 (819)
+++++|.+.|++..+.| .++.. +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35677888888877776 33333 6666777777888888888888764 66777777777777 7788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 003451 719 SRIFSEMRDSGLVPDVITYNTFVASYAA----DSLFVEALDVVRYMIKQG 764 (819)
Q Consensus 719 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 764 (819)
.++|++..+.| +...+..++..|.. .+++++|+.+++++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888888754 56677788888877 788888888888888765
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.96 E-value=2.3e-05 Score=64.90 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 003451 717 EASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 717 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
+|++.|+++.+.. ..+...+..++..+...|++++|+..++++++. .| +...|..++.+|...|++++|...++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555666665532 124556666666677777777777777776663 34 4566666777777777777777777777
Q ss_pred hhcCCC
Q 003451 796 SKLDPH 801 (819)
Q Consensus 796 ~~~~p~ 801 (819)
.+..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 666654
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.1e-05 Score=66.25 Aligned_cols=94 Identities=7% Similarity=0.083 Sum_probs=58.7
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-------QNT 771 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~ 771 (819)
...+..+...+...|++++|.+.|++.++.. ..+...+..++.++...|++++|+..++++++ +.|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHHH
Confidence 4455666666667777777777777766632 12455666777777777777777777777766 3443 455
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHh
Q 003451 772 YNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 772 ~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
+..++.++...|+.++|+..++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHh
Confidence 556666666666666665554443
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.91 E-value=0.00014 Score=76.85 Aligned_cols=125 Identities=9% Similarity=-0.036 Sum_probs=66.7
Q ss_pred HhcCCHHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHH
Q 003451 675 SRSENFARAEDVLREILAK---GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGL-VPDV-ITYNTF 740 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~-~p~~-~~~~~l 740 (819)
...|++++|+.++++.++. -+.++ ..+++.|+.+|..+|++++|..++++.++ .|. .|+. .+++.+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555555555554421 11111 34556666666666666666666666554 121 1222 256666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHhhhcC
Q 003451 741 VASYAADSLFVEALDVVRYMIKQ---GCKPN----QNTYNSIVDGYCKLNQRYEAITFVNNLSKLD 799 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 799 (819)
+..|...|++++|+.+++++++. -+.|| ..+...+..++...|++++|...+.++.+..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665531 11222 2344555666666666667766666666543
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.85 E-value=3.6e-05 Score=61.67 Aligned_cols=68 Identities=16% Similarity=0.160 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+...+..++.++...|++++|+..++++++. .| +...|..++.+|...|++++|+..+++++++.|..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 4456666777777777777777777777763 34 45666677777777777777777777777665543
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00016 Score=59.07 Aligned_cols=68 Identities=18% Similarity=0.185 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+...+..++..+...|++++|+..++++++. .| +...|..++.+|...|++++|+..++++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4567888999999999999999999999985 45 78899999999999999999999999999999987
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.74 E-value=9.5e-05 Score=63.39 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=66.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 003451 676 RSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM----------KEASRIFSEMRDSGLVP-DVITYNTFVASY 744 (819)
Q Consensus 676 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~ 744 (819)
+.+.+++|++.+++.++.. +.+...|..+..++...|++ ++|+..|++.++ +.| +..+|..++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 4456677777777777653 22566777777777766554 588888888887 444 445788888888
Q ss_pred HhcC-----------ChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003451 745 AADS-----------LFVEALDVVRYMIKQGCKPNQNTYNSI 775 (819)
Q Consensus 745 ~~~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l 775 (819)
...| ++++|+..|+++++ +.|+...|...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~a 130 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 7764 89999999999998 57865555433
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=0.00031 Score=74.15 Aligned_cols=125 Identities=8% Similarity=0.008 Sum_probs=88.9
Q ss_pred HHHhcCChHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HhHHH
Q 003451 638 IYGRRQMVAKTNEILHFMNDS---GFTP----SLTTYNTLMYMYSRSENFARAEDVLREILAK-----GI-KPD-IISYN 703 (819)
Q Consensus 638 ~~~~~~~~~~A~~~~~~~~~~---~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~ 703 (819)
.+...|++++|+.++++.++. -+.+ ...+++.++.+|...|++++|+.++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667788887777766542 1112 2245788888888889999888888887631 21 222 56788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 704 TVIFAYCRNGRMKEASRIFSEMRD-----SGLV-PDV-ITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.|+..|..+|++++|..+++++.+ .|.. |+. .+...+..++...+++++|..+++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999988875 2332 222 2556777778888899999999998876
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00017 Score=56.26 Aligned_cols=68 Identities=19% Similarity=0.348 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 735 ITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 735 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
..+..++..+...|++++|+..++++++. .| +..++..++.+|...|++++|...++++.+.+|.+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 78 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHH
Confidence 35556666666677777777777776663 33 5566666777777777777777777777777666533
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00036 Score=54.35 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=56.8
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVD 777 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 777 (819)
...+..+...+...|++++|...+++..+.. ..+...+..++.++...|++++|+..++++++. .| +...+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 4566667777777777888887777777642 224567777777788888888888888887774 34 5666667776
Q ss_pred HHHhcC
Q 003451 778 GYCKLN 783 (819)
Q Consensus 778 ~~~~~g 783 (819)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 665543
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.65 E-value=0.00038 Score=58.89 Aligned_cols=89 Identities=11% Similarity=0.203 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHhHHH
Q 003451 715 MKEASRIFSEMRDSGLVPDVITYNTFVASYAADS---LFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEAI 789 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 789 (819)
...+.+.|.+..+.|. ++..+...+++++++++ ++++++.+++...+.+ .| +...+..++-+|++.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4566677777766554 68888889999999988 6779999999998853 35 4567778888999999999999
Q ss_pred HHHHHhhhcCCCCCHH
Q 003451 790 TFVNNLSKLDPHVTKE 805 (819)
Q Consensus 790 ~~~~~~~~~~p~~~~~ 805 (819)
++++++++.+|++...
T Consensus 92 ~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhcCCCCHHH
Confidence 9999999999988665
No 208
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.59 E-value=0.00045 Score=54.95 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=43.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 003451 706 IFAYCRNGRMKEASRIFSEMRDSGLVPDVI-TYNTFVASYAADSLFVEALDVVRYMIKQGCKPN-QNTYNSIVDGYCKLN 783 (819)
Q Consensus 706 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 783 (819)
+..+...|++++|.+.++++.+... .+.. .+..++.++...|++++|+..++++++. .|+ ...+.. +
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------H
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------H
Confidence 3445555666666666666555321 1334 5555555666666666666666666553 332 222211 3
Q ss_pred CHhHHHHHHHHhhhcCCCC
Q 003451 784 QRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 784 ~~~~A~~~~~~~~~~~p~~ 802 (819)
.+.+|...++++.+.+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4455555555555554443
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.54 E-value=0.00056 Score=56.30 Aligned_cols=79 Identities=11% Similarity=0.074 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 003451 682 RAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMI 761 (819)
Q Consensus 682 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 761 (819)
+|++.|+++++.. +.+...+..++..|...|++++|...|++.++... .+...|..++.++...|++++|+..+++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3556666666542 22466666777777777777777777777766421 234566677777777777777777777776
Q ss_pred H
Q 003451 762 K 762 (819)
Q Consensus 762 ~ 762 (819)
+
T Consensus 81 ~ 81 (115)
T 2kat_A 81 A 81 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.47 E-value=0.00021 Score=56.90 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=51.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHH-HHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHH
Q 003451 739 TFVASYAADSLFVEALDVVRYMIKQGCKP-NQN-TYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELE 807 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 807 (819)
..+..+...|++++|+..++++++. .| +.. .+..++.+|...|++++|+..++++++.+|++....+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3456677888888888888888774 45 556 7778888888888888888888888888888776553
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.47 E-value=0.00069 Score=52.76 Aligned_cols=68 Identities=12% Similarity=-0.047 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 732 PDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 732 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
.+...+..++.+++..++ .++|..+++++++ ..| +...+..++..+.+.|++++|+..|+++++.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466778888888765544 7899999999988 456 6788888999999999999999999999999888
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.41 E-value=0.00098 Score=53.49 Aligned_cols=73 Identities=8% Similarity=0.032 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 733 DVITYNTFVASYAADSLFVEALDVVRYMIKQG------CKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 733 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+...+..++..+...|+++.|+.+++.+++.- -.+...++..++.+|.+.|++++|..++++++++.|++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34455677777778888888888877776531 11245677788888888888888888888888888877555
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.38 E-value=0.0022 Score=63.52 Aligned_cols=139 Identities=13% Similarity=0.039 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHH--Hhc---CCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHh---cC-C----HHHHHHHHHHHH
Q 003451 661 TPSLTTYNTLMYMY--SRS---ENFARAEDVLREILAKGIKPD-IISYNTVIFAYCR---NG-R----MKEASRIFSEMR 726 (819)
Q Consensus 661 ~p~~~~~~~l~~~~--~~~---g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~----~~~A~~~~~~~~ 726 (819)
+.+...|..++.+. ... .+..+|+.+|+++++. .|+ ...|..+..+|.. .+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 34445555554442 222 2346777777777764 344 3444433333321 11 1 111111222211
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCC
Q 003451 727 DS-GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVT 803 (819)
Q Consensus 727 ~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 803 (819)
.. ....+..+|..++..+...|++++|+..++++++.+ |+...|..++..+.-.|+.++|.+.++++..++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 11 124466788888877778899999999999999864 7877888889999999999999999999999998764
No 214
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.30 E-value=0.00086 Score=53.44 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=40.3
Q ss_pred CHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 698 DIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+...+..++.+|...|++++|++.|+++++.... +...|..++.+|...|++++|+..++++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666666666677777666666663211 344666666666677777777766666654
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.17 E-value=0.0016 Score=67.53 Aligned_cols=94 Identities=10% Similarity=-0.041 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC---H-HHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCC---C-HHHHHHHHH
Q 003451 712 NGRMKEASRIFSEMRDS---GLVPD---V-ITYNTFVASYAADSLFVEALDVVRYMIKQ---GCKP---N-QNTYNSIVD 777 (819)
Q Consensus 712 ~g~~~~A~~~~~~~~~~---g~~p~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p---~-~~~~~~l~~ 777 (819)
.|++++|+.++++.++. -+.|+ . .+++.++.+|...|+|++|+.+++++++. -+.| + ..+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666665541 11222 1 35666777777777777777777766531 1122 1 355777777
Q ss_pred HHHhcCCHhHHHHHHHHhhh-----cCCCCCHH
Q 003451 778 GYCKLNQRYEAITFVNNLSK-----LDPHVTKE 805 (819)
Q Consensus 778 ~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~ 805 (819)
.|..+|++++|..+++++++ +||+.+.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 77777777777777777654 35655433
No 216
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.14 E-value=0.0028 Score=51.44 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHhHH
Q 003451 714 RMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE---ALDVVRYMIKQGCKP--NQNTYNSIVDGYCKLNQRYEA 788 (819)
Q Consensus 714 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 788 (819)
....+.+.|.+....|. ++..+-..+++++.++....+ ++.+++.+.+.+ .| .......|+-++++.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34556666666655554 678888888999998887555 888888887753 24 345666888899999999999
Q ss_pred HHHHHHhhhcCCCCCHH-HHHHHHH
Q 003451 789 ITFVNNLSKLDPHVTKE-LECKLSD 812 (819)
Q Consensus 789 ~~~~~~~~~~~p~~~~~-~~~~l~~ 812 (819)
+++++.+++..|.+... ....+|+
T Consensus 94 ~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999988655 4444444
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.0077 Score=59.63 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHH--h---cCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHh---cC--C---HHHHHHHHHHHH
Q 003451 626 SPDIPTLNAMISIYG--R---RQMVAKTNEILHFMNDSGFTPS-LTTYNTLMYMYSR---SE--N---FARAEDVLREIL 691 (819)
Q Consensus 626 ~~~~~~~~~l~~~~~--~---~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g--~---~~~A~~~~~~~~ 691 (819)
+.+...|...+.+.. . .....+|+.+|++..+. .|+ ...|..+..+|.. .+ . .......++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 335555555554432 2 22356777788877765 343 3444444444321 01 1 111111222211
Q ss_pred HC-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 003451 692 AK-GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQN 770 (819)
Q Consensus 692 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 770 (819)
.. ....+...|..+...+...|++++|...+++++.. .|+...|..++..+...|++++|.+.++++.. +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 11 12346788888877777789999999999999985 47888888889999999999999999999988 567766
Q ss_pred HHH
Q 003451 771 TYN 773 (819)
Q Consensus 771 ~~~ 773 (819)
+|.
T Consensus 345 t~~ 347 (372)
T 3ly7_A 345 TLY 347 (372)
T ss_dssp HHH
T ss_pred hHH
Confidence 654
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.99 E-value=0.0037 Score=64.81 Aligned_cols=86 Identities=6% Similarity=-0.086 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHH
Q 003451 677 SENFARAEDVLREILAK---GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGL-VPDV-ITYNTFVA 742 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~-~p~~-~~~~~l~~ 742 (819)
.|++++|+.++++.++. -+.|+ ..+++.|+.+|..+|++++|+.+++++++ .|. .|+. .+++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45677777777766531 12222 46677788888888888888888888775 232 2333 36788888
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 003451 743 SYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 743 ~~~~~g~~~~A~~~~~~~~~ 762 (819)
.|...|++++|+.+++++++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888888764
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.99 E-value=0.0044 Score=64.36 Aligned_cols=99 Identities=7% Similarity=-0.151 Sum_probs=68.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHHH
Q 003451 707 FAYCRNGRMKEASRIFSEMRDS---GLVPDV----ITYNTFVASYAADSLFVEALDVVRYMIKQ---GCKPN----QNTY 772 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~~---g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~ 772 (819)
..+..+|++++|+.++++.++. -+.|+. .+++.++.+|...|+|++|+.+++++++. -+.|+ ..++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3355677888888888887753 122222 36778888888888888888888887642 12222 3567
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhh-----cCCCCCHH
Q 003451 773 NSIVDGYCKLNQRYEAITFVNNLSK-----LDPHVTKE 805 (819)
Q Consensus 773 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~ 805 (819)
+.|+..|..+|++++|..+++++++ +||+.+.+
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 7888888888888888888888764 36766544
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.90 E-value=0.11 Score=49.15 Aligned_cols=83 Identities=18% Similarity=0.230 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc-C
Q 003451 715 MKEASRIFSEMRDSGLVPD---VITYNTFVASYAAD-----SLFVEALDVVRYMIKQGCKP--NQNTYNSIVDGYCKL-N 783 (819)
Q Consensus 715 ~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-g 783 (819)
..+|...++++++ +.|+ ...|..++..|... |+.++|..+|+++++ +.| +..++...++.++.. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcC
Confidence 5677788888887 5676 34788888888884 899999999999998 456 377777888888874 8
Q ss_pred CHhHHHHHHHHhhhcCCC
Q 003451 784 QRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 784 ~~~~A~~~~~~~~~~~p~ 801 (819)
+.++|.+.+++++...|.
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 999999999999998887
No 221
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.88 E-value=0.014 Score=47.41 Aligned_cols=84 Identities=10% Similarity=0.075 Sum_probs=66.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 729 GLVPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 729 g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+-.|+..+-..+++++.++.. ..+++.+++.+.+.+..-....+..|+-++++.|++++|+++.+.+++..|++...
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 456788888899999998875 45788999998875421235677789999999999999999999999999999776
Q ss_pred -HHHHHHH
Q 003451 806 -LECKLSD 812 (819)
Q Consensus 806 -~~~~l~~ 812 (819)
....+|+
T Consensus 115 ~~Lk~~Ie 122 (134)
T 3o48_A 115 GALKSMVE 122 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 3444444
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.88 E-value=0.13 Score=48.73 Aligned_cols=107 Identities=12% Similarity=0.074 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-
Q 003451 679 NFARAEDVLREILAKGIKPD---IISYNTVIFAYCRN-----GRMKEASRIFSEMRDSGLVP--DVITYNTFVASYAAD- 747 (819)
Q Consensus 679 ~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~- 747 (819)
....|...++++++. .|+ -..|..++..|.+. |+.++|.+.|++.++ +.| +..++..++..++..
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhc
Confidence 367888889999884 566 56888999989884 999999999999999 455 367888888888885
Q ss_pred CChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHhhh
Q 003451 748 SLFVEALDVVRYMIKQGCK--PNQNTYNSIVDGYCKLNQRYEAITFVNNLSK 797 (819)
Q Consensus 748 g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 797 (819)
|+.++|.++++++++.+.. |+....+. +..++|..+++++.+
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQD 297 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHH
Confidence 9999999999999986555 55443333 344677777766544
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.79 E-value=0.012 Score=61.15 Aligned_cols=91 Identities=10% Similarity=0.036 Sum_probs=68.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC---CCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCCH-HHH
Q 003451 672 YMYSRSENFARAEDVLREILAK---GIKPD----IISYNTVIFAYCRNGRMKEASRIFSEMRD-----SG-LVPDV-ITY 737 (819)
Q Consensus 672 ~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g-~~p~~-~~~ 737 (819)
.-+...|++++|+.++++.++. -+.++ ..+++.++.+|...|++++|+.+++++++ .| ..|+. .++
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3355678888888888888743 12222 56788888899999999999999988875 22 22333 378
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 738 NTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+.++..|...|++++|+.+++++++
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 8999999999999999999998864
No 224
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.74 E-value=0.041 Score=45.38 Aligned_cols=83 Identities=8% Similarity=0.049 Sum_probs=64.2
Q ss_pred CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH-
Q 003451 730 LVPDVITYNTFVASYAADSL---FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE- 805 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~- 805 (819)
-.|+..+-..+++++.++.. ..+++.+++.+.+.+..-.......|+-++++.|++++|+++.+.+++..|.+...
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 35788888889999998875 55788889998875322234566688889999999999999999999999998665
Q ss_pred HHHHHHH
Q 003451 806 LECKLSD 812 (819)
Q Consensus 806 ~~~~l~~ 812 (819)
....+|+
T Consensus 115 ~Lk~~Ie 121 (144)
T 1y8m_A 115 ALKSMVE 121 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.64 E-value=0.092 Score=60.41 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=70.0
Q ss_pred HhCCChHHHHH-HHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003451 325 GKCRRPKEAMQ-VLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (819)
Q Consensus 325 ~~~g~~~~A~~-~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A 403 (819)
...+++++|.+ ++..+ ++......++..+.+.|..++|+++.+.- .. -.......|++++|
T Consensus 610 ~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~---------~~---~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ---------DQ---KFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH---------HH---HHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc---------ch---heehhhhcCCHHHH
Confidence 35677777766 44221 11222356666777777777777655321 11 12334556777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEM 480 (819)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 480 (819)
.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...|...|+.+...++.+..
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 7775432 2567777788888888888888887776542 333444444455555444443333
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.61 E-value=0.015 Score=49.25 Aligned_cols=85 Identities=13% Similarity=0.132 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHH
Q 003451 680 FARAEDVLREILAKGIKPDIISYNTVIFAYCRNG---RMKEASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFVEAL 754 (819)
Q Consensus 680 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~ 754 (819)
...+.+.|++..+.+. ++..+...+..++++.+ ++++++.++++..+.. .| ....+..++-++++.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555443 46666666666666666 4556777777666642 13 2345556666677777777777
Q ss_pred HHHHHHHHcCCCCC
Q 003451 755 DVVRYMIKQGCKPN 768 (819)
Q Consensus 755 ~~~~~~~~~~~~p~ 768 (819)
++++.+++ ++|+
T Consensus 92 ~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHH--HCTT
T ss_pred HHHHHHHh--cCCC
Confidence 77777776 4563
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.35 E-value=0.035 Score=44.17 Aligned_cols=68 Identities=6% Similarity=-0.031 Sum_probs=44.9
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDSG------LVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 768 (819)
..-+..++..+.+.|+++.|..+|+++.+.- -.+...++..++.++.+.|++++|+.+++++.+ +.|+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 3444556666677777777777777766520 112345677778888888888888888888877 4563
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.30 E-value=0.072 Score=44.24 Aligned_cols=102 Identities=11% Similarity=-0.004 Sum_probs=54.8
Q ss_pred CHhHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCHH--------HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 003451 698 DIISYNTVIFAYCRNGRM------KEASRIFSEMRDSGLVPDVI--------TYNTFVASYAADSLFVEALDVVRYMIKQ 763 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~g~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 763 (819)
|..+|...+...-+.|+. ++.+++|+++... +.|+.. .|..++ .+...++.++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 344555555555544555 5555555555542 333221 111111 112335666777777776654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCC
Q 003451 764 GCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHV 802 (819)
Q Consensus 764 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 802 (819)
+ +--..+|...+..-.++|+...|++++.+++..+|.+
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2 2225666666666667777777777777777776665
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.98 E-value=0.21 Score=57.34 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHc
Q 003451 283 NTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARD 362 (819)
Q Consensus 283 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 362 (819)
..++..+.+.|..++|.++.+.-. .-.......|++++|.++.+.+ .+...|..|...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555555666666655442111 1122344567777777665443 3556677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003451 363 GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVF 442 (819)
Q Consensus 363 g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 442 (819)
|+++.|.+.|.++.. |..+...+...|+.+...++-+.....|. ++.....|.+.|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777777776543 33344445555666555555444444321 122233344455555555554
Q ss_pred HH
Q 003451 443 DE 444 (819)
Q Consensus 443 ~~ 444 (819)
.+
T Consensus 760 ~~ 761 (814)
T 3mkq_A 760 IK 761 (814)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.97 E-value=0.039 Score=42.66 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=34.4
Q ss_pred CHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 698 DIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVP-DVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 698 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+...+..+..++...++ .++|..++++.++. .| +......++..+.+.|++++|+.+++++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555555543333 45666666666553 23 334555555666666666666666666655
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.58 Score=40.64 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=63.8
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003451 324 YGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESA 403 (819)
Q Consensus 324 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A 403 (819)
....|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 45677777777777665 2566777777777777888777777776543 33444455666777666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 003451 404 MKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKVFDEI 445 (819)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 445 (819)
.++-+.....| + ++.....+.-.|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 65555555443 1 233334455567777777776553
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.82 Score=39.69 Aligned_cols=100 Identities=10% Similarity=0.080 Sum_probs=56.7
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHH
Q 003451 640 GRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEAS 719 (819)
Q Consensus 640 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 719 (819)
...|+++.|.++.+.+ .+...|..+.......|+++-|++.|.+..+ +..+...|.-.|+.+.-.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3456677776666554 2456677777777777777777777665532 223333455556666555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 003451 720 RIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYM 760 (819)
Q Consensus 720 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 760 (819)
++-+.....| -++....++...|+++++++++.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5554444433 1233334455667777776666443
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.51 E-value=0.06 Score=43.69 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=57.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChH
Q 003451 677 SENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKE---ASRIFSEMRDSGLVP--DVITYNTFVASYAADSLFV 751 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~ 751 (819)
...+..+.+.|++....|. ++..+-..++.++.+..+..+ ++.+++.+.+.+ .| .......++-++++.|+|+
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3345556666665555443 566676777777777776554 777777776642 12 2335566777788888888
Q ss_pred HHHHHHHHHHHcCCCCC
Q 003451 752 EALDVVRYMIKQGCKPN 768 (819)
Q Consensus 752 ~A~~~~~~~~~~~~~p~ 768 (819)
+|.++++.+++ +.|+
T Consensus 92 ~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHH--hCCC
Confidence 88888888887 5673
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.40 E-value=0.21 Score=41.53 Aligned_cols=102 Identities=9% Similarity=0.070 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH--------hHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 663 SLTTYNTLMYMYSRSENF------ARAEDVLREILAKGIKPDI--------ISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 663 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
|..+|-..+....+.|+. ++.+++|+++... ++|+. ..|.-.+ .+...++.++|.++|+.++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 444454455544444555 5566666666543 34431 1111111 123446788888888888664
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003451 729 GLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 729 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 767 (819)
+-.- ...|...+..-.++|++..|.+++.+++..+..|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2222 5566666666777888888888888888765443
No 235
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.22 E-value=0.99 Score=36.61 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003451 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (819)
Q Consensus 454 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 520 (819)
....+..+..+...|..++-.+++.++.. +.+|++.....+..+|.+.|+..+|.+++.++.+.|+
T Consensus 91 se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 91 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 34444555555666666666666665433 2344555666666666666666666666666666554
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.73 E-value=1.4 Score=35.80 Aligned_cols=139 Identities=12% Similarity=0.048 Sum_probs=80.5
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 003451 642 RQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 721 (819)
Q Consensus 642 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 721 (819)
.|.+++..++..+.... .+..-||-++--....-+-+-..+.++.+-+. + | ...+|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--D----------is~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--C----------cHhhhcHHHHHHH
Confidence 46667777777666653 23344444443334444444445555544321 1 2 1233444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 722 FSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 722 ~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
+-.+ .-+...++..+..+..+|+-|+-.+++..+.. +.+|++.....++.+|.+.|+..+|.++++++-+.|..
T Consensus 84 ~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 84 GVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4332 11334455556667777777777777777543 24667778888888888888888888888888777654
Q ss_pred C
Q 003451 802 V 802 (819)
Q Consensus 802 ~ 802 (819)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 237
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.48 E-value=8.1 Score=43.54 Aligned_cols=151 Identities=5% Similarity=0.057 Sum_probs=67.4
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHH-H---HHHHHHHHhc
Q 003451 569 YANGREIDQMLALSEEIYSGIIEPHAVLLKT--LILVYSKSDLLMDTERAFLELKKKGFSPDIPT-L---NAMISIYGRR 642 (819)
Q Consensus 569 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~---~~l~~~~~~~ 642 (819)
+...|+.+....++..+.+.. +..+... +.-++...|+.+.+..+.+.+... .+... | ..+.-+|+..
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence 344555555555555554421 2222222 222333556666666666655542 12221 1 1233345566
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC-HHHHHHH
Q 003451 643 QMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR-MKEASRI 721 (819)
Q Consensus 643 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 721 (819)
|+.....+++..+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|+ ..+|.++
T Consensus 574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~ 651 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV 651 (963)
T ss_dssp CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 66655555666666531 1122222222233334455555555555444432 3333333333333333433 2566666
Q ss_pred HHHHHH
Q 003451 722 FSEMRD 727 (819)
Q Consensus 722 ~~~~~~ 727 (819)
+..+..
T Consensus 652 L~~L~~ 657 (963)
T 4ady_A 652 LDPLTK 657 (963)
T ss_dssp HHHHHT
T ss_pred HHHHcc
Confidence 666653
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.33 E-value=3.8 Score=42.44 Aligned_cols=271 Identities=9% Similarity=0.072 Sum_probs=138.9
Q ss_pred CChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 003451 503 GSFDQAMSIYKRMLEA-----GVTPDLSTYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLHAYANGREIDQ 577 (819)
Q Consensus 503 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 577 (819)
|+++.|.+.+..+.+. +..........++..|...|+|+...+.+.-+....-.. ......+++.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~------- 101 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVM------- 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHH-------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHH-------
Confidence 6788888877665542 344456777888888888898888877776655432111 222223332211
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 003451 578 MLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSP---DIPTLNAMISIYGRRQMVAKTNEILHF 654 (819)
Q Consensus 578 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~ 654 (819)
..+... ...+..+...++..... ..+..+-- .......|+..|...|++.+|.+++..
T Consensus 102 --~~l~~~----~~~d~~~~~~~i~~l~~-------------vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~ 162 (445)
T 4b4t_P 102 --EYLKSS----KSLDLNTRISVIETIRV-------------VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCE 162 (445)
T ss_dssp --HHHHHH----CTTHHHHHHHHHHCCSS-------------SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred --HHHhcC----CchhHHHHHHHHHHHHH-------------HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 111110 00111111111110000 00000001 112234566777778888888888877
Q ss_pred HhhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHH
Q 003451 655 MNDS--GFTPS---LTTYNTLMYMYSRSENFARAEDVLREIL----AKGIKPD--IISYNTVIFAYCRNGRMKEASRIFS 723 (819)
Q Consensus 655 ~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 723 (819)
+... |.... ...+...++.|...+++.+|..+++++. .....|+ ...+...+..+...+++.+|.+.|.
T Consensus 163 l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~ 242 (445)
T 4b4t_P 163 LQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQ 242 (445)
T ss_dssp HHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 7532 21111 1345666778888889988888888764 2222222 3456667777788888888888888
Q ss_pred HHHHC-CCCCCHHH----HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHhHHHHHHHHhh
Q 003451 724 EMRDS-GLVPDVIT----YNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKL--NQRYEAITFVNNLS 796 (819)
Q Consensus 724 ~~~~~-g~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~ 796 (819)
++.+. ...-|... ...++.+..-.+...+--.++.+..+...-++...|..++.+|... .++..+.+.++..+
T Consensus 243 e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 243 EIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 77652 11112221 2222222222222222222333332221223556777788877643 45666666666555
Q ss_pred hcCC
Q 003451 797 KLDP 800 (819)
Q Consensus 797 ~~~p 800 (819)
..++
T Consensus 323 ~~~~ 326 (445)
T 4b4t_P 323 NEDD 326 (445)
T ss_dssp TTCC
T ss_pred cccc
Confidence 4443
No 239
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.56 E-value=8.3e-05 Score=74.55 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003451 172 RGSVIAVLISMLGKEGKVSVAASLLHGLHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILN 251 (819)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 251 (819)
+++.|..++.+..+.|.+++...++.-.++... ++.+=+.|+-+|++.++..+-.+++. .|++.-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 334455555555555555555555544443311 23334455555555555443222221 233333344444
Q ss_pred HHHhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChH
Q 003451 252 VYGKMGMPWNKIMALVEGMKSAGVKPDSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPK 331 (819)
Q Consensus 252 ~~~~~g~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 331 (819)
-|...| .++.|.-+|..+.. |..|...+.+.|++.+|.+.-+ + ..+..||-.+-.+|...+++.
T Consensus 153 rcf~e~-lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaAr---K---Ans~ktWKeV~~ACvd~~Efr 216 (624)
T 3lvg_A 153 RCYDEK-MYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR---K---ANSTRTWKEVCFACVDGKEFR 216 (624)
T ss_dssp HHHHSC-CSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTT---T---CCSSCSHHHHTHHHHHSCTTT
T ss_pred HHHHcc-CHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHH---h---cCChhHHHHHHHHHhCchHHH
Confidence 444444 34444433332221 1122233334444443332211 1 224455555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003451 332 EAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKA 397 (819)
Q Consensus 332 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~ 397 (819)
-|.-.--.+.-. ++ ....++..|-..|.+++-+.+++.-... -......|+-|.-.|++-
T Consensus 217 LAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 217 LAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 444333232211 11 1222444555556666655555554421 123444555555555443
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.48 E-value=0.34 Score=53.36 Aligned_cols=54 Identities=11% Similarity=0.051 Sum_probs=44.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhh
Q 003451 741 VASYAADSLFVEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLS 796 (819)
Q Consensus 741 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 796 (819)
+..+...|+++-|+++.++++. ..| +..+|..|+.+|.+.|+++.|+-.++-+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3445677888999999888887 466 68889999999999999999988888875
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.08 E-value=1.2 Score=36.29 Aligned_cols=71 Identities=8% Similarity=0.023 Sum_probs=43.4
Q ss_pred CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003451 696 KPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 696 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 768 (819)
.|+..+-..++.++.+..+ ..+++.+++++.+.+..-....+..++-++.+.|++++|.++++.+++ +.|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 4555666666666666654 345666666666543211234556666677777777777777777776 5663
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.97 E-value=15 Score=41.53 Aligned_cols=265 Identities=12% Similarity=0.036 Sum_probs=147.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-----CCHHHHHHHHH
Q 003451 497 SAYSRCGSFDQAMSIYKRMLEAGVTPDL--STYNAVLAALARGGMWEQSEKIFAEMKGGRC--K-----PNELTYSSLLH 567 (819)
Q Consensus 497 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~-----~~~~~~~~l~~ 567 (819)
-+....|+.++++.+++.....+-..+. ..=..+.-+....|..+++..++.......- . +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3566778888888887766542111122 2223334456667776778887777664311 0 11111222222
Q ss_pred HHHccCC-HHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003451 568 AYANGRE-IDQMLALSEEIYSGIIE-PHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMV 645 (819)
Q Consensus 568 ~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 645 (819)
++...|. -+++...+..++..... ........++..+.-.|+-+-...++..+.+.. ..+..-...+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 3332332 24556666666553211 011233345566777888877778877776642 11222233344444577888
Q ss_pred HHHHHHHHHHhhCCCCCCHHH-H---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 003451 646 AKTNEILHFMNDSGFTPSLTT-Y---NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRI 721 (819)
Q Consensus 646 ~~A~~~~~~~~~~~~~p~~~~-~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 721 (819)
+.+..+++.+... .+... | .++.-+|+..|+.....+++..+... ...++.-...+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 8888888888764 33333 2 23455678889988877799988864 222344444444555567777767777
Q ss_pred HHHHHHCCCCCCHHHHH--HHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHH
Q 003451 722 FSEMRDSGLVPDVITYN--TFVASYAADSL-FVEALDVVRYMIKQGCKPNQNTY 772 (819)
Q Consensus 722 ~~~~~~~g~~p~~~~~~--~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~ 772 (819)
++.+.+.+ |..+-. .++-+....|. ..+|+..+..+.. .+|..+-
T Consensus 617 v~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 76665532 343333 33333333443 3788999999974 4554443
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.93 E-value=3 Score=34.45 Aligned_cols=71 Identities=8% Similarity=0.023 Sum_probs=40.6
Q ss_pred CCCHhHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003451 696 KPDIISYNTVIFAYCRNGR---MKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 696 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 768 (819)
.++..+-..+..++.+..+ ..+++.+++.+.+.+..-.......++-++++.|+|++|.++.+.+++ +.|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 3455555555666665554 335566666665533222233455566666777777777777777766 4563
No 244
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.30 E-value=0.0014 Score=65.93 Aligned_cols=236 Identities=10% Similarity=0.083 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 003451 278 DSYTFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS 357 (819)
Q Consensus 278 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 357 (819)
|...|..++....+.|.+++-.+.+.-..+. ..+...=+.|+-+|+|.++..+-++++ ..||..-...+..
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHH
Confidence 5667778888888888888777777554443 234445567788888888776655444 2356666677777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 003451 358 AYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVE 437 (819)
Q Consensus 358 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 437 (819)
-|...|.++.|.-+|..+.. |..|...+...|++..|.+.-++ ..++.||..+-.+|...+++.-
T Consensus 153 rcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrL 217 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRL 217 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTT
T ss_pred HHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHH
Confidence 77778887777666654322 34455556677777666544222 2366788888889999888877
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 438 MMKVFDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNTLISAYSRCGSFDQAMSIYKRMLE 517 (819)
Q Consensus 438 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 517 (819)
|...--.+.-. ......++..|-..|.+++-+.+++.-... -......|+-|.-.|++- ++++.++-++..-.
T Consensus 218 AqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~s 290 (624)
T 3lvg_A 218 AQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWS 290 (624)
T ss_dssp TTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSS
T ss_pred HHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 66554444322 112234677788999999999998887643 234667888888888875 44554444443322
Q ss_pred C-CCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 003451 518 A-GVTP------DLSTYNAVLAALARGGMWEQSE 544 (819)
Q Consensus 518 ~-~~~~------~~~~~~~l~~~~~~~g~~~~A~ 544 (819)
+ +++- ....|.-++-.|.+-.+++.|.
T Consensus 291 riNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 291 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp SSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred hccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 2 2221 1233555555666666666554
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.14 E-value=0.88 Score=50.15 Aligned_cols=130 Identities=11% Similarity=0.027 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhC------CCC-CCHH-
Q 003451 210 AYTSLITTYASNGR-YREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMALVEGMKSA------GVK-PDSY- 280 (819)
Q Consensus 210 ~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~~~~~~~~~------~~~-p~~~- 280 (819)
.-..++..+...|+ .+.|..+|+++.+....-+......++..+.+.+..--+|.+++.+..+. ... -+..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34455555555666 57899999998877432223233344444444332233455555444321 111 1111
Q ss_pred ---------HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHH
Q 003451 281 ---------TFNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREM 340 (819)
Q Consensus 281 ---------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 340 (819)
....=...|...|+++.|+++-++....- +.+-.+|..|+.+|.+.|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11111233445666666666666665541 223456666666666666666666666554
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=91.00 E-value=2 Score=32.78 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003451 749 LFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 749 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
+.-+..+-++.+...++.|++.+....+.+|.+.+|+.-|.++++-+..+-... ..+|..+++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-hhhHHHHHHHH
Confidence 344666666677666777777777777777777777777777777776554333 34566665544
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.26 E-value=4.8 Score=34.30 Aligned_cols=121 Identities=7% Similarity=0.015 Sum_probs=61.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC-------HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH-HH
Q 003451 668 NTLMYMYSRSENFARAEDVLREILAKG-IKPD-------IISYNTVIFAYCRNGRMKEASRIFSEMRDSG-LVPDVI-TY 737 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~-~~ 737 (819)
..-+..+...|.++.|+-+.+.+.... ..++ ..++..+++++...|++..|...|++.+... .-+... +.
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 334555666777777777666654210 1122 1345556667777777777777777765421 111110 00
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 738 NTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 738 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
..+. -...... ......+...-..++.+|.+.|++++|+.+++.+......
T Consensus 104 ~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 104 PSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred cccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 0000 0000000 0012223455557888889999999999998887655443
No 248
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.44 E-value=21 Score=36.78 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH--H
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAK--GIKPD---IISYNTVIFAYCRNGRMKEASRIFSEMRDS----GLVPDV--I 735 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~--~ 735 (819)
...|...|...|++.+|.+++..+... +.... ...+...+..|...+++..|..++.++... ...|+. .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788899999999999999998732 22211 456777789999999999999999987531 122222 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 736 TYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 736 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.+...+..+...++|.+|...|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 556777788899999999999888865
No 249
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.30 E-value=2 Score=36.61 Aligned_cols=133 Identities=6% Similarity=0.016 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhH
Q 003451 632 LNAMISIYGRRQMVAKTNEILHFMNDS-GFTPSL-------TTYNTLMYMYSRSENFARAEDVLREILAKG--IKPDIIS 701 (819)
Q Consensus 632 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~ 701 (819)
+-.-+..+...|.++.|+-+.+.+... +..++. .++..+++++...|++.+|...|++.++.. +.-....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344456677889999999888876543 123442 256778899999999999999999986421 1111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003451 702 YNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGY 779 (819)
Q Consensus 702 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 779 (819)
...+. ....... ......+.+.-..++.+|.+.|++++|+.+++.+-.. .-++.+-..|++.|
T Consensus 103 ~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k--~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 103 RPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR--QRTPKINMLLANLY 165 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG--GCCHHHHHHHHHHC
T ss_pred ccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch--hcCHHHHHHHHHHh
Confidence 11110 0000000 0112334556666888899999999999988776432 22455555555544
No 250
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.81 E-value=21 Score=35.87 Aligned_cols=93 Identities=15% Similarity=0.031 Sum_probs=49.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhCCChHHHHHHHHHHHHC--C--CCCCHhhHHH
Q 003451 284 TLISCCRRGSLHEEAAGVFEEMKLAGFSPD-----KVTYNALLDVYGKCRRPKEAMQVLREMKIN--G--CLPSIVTYNS 354 (819)
Q Consensus 284 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g--~~~~~~~~~~ 354 (819)
.++..|...|++.+|.+++..+.+.--..| ..+|..-++.|...+++.++...+...... . ++|.....--
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456667777777777777766665311111 223444566677777777777777665432 1 1222211111
Q ss_pred H--HHHHH-HcCCHHHHHHHHHHHH
Q 003451 355 L--ISAYA-RDGLLEEAMELKTQMV 376 (819)
Q Consensus 355 l--i~~~~-~~g~~~~A~~~~~~m~ 376 (819)
. ...+. ..++|..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1 12234 5677777776665543
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.12 E-value=20 Score=34.83 Aligned_cols=82 Identities=11% Similarity=0.149 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003451 627 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 706 (819)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 706 (819)
-|+.....+...|.+.+++.+|...|- . |-.++...+..++.-+...+...+ .+...-..++
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL 195 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL 195 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH
Confidence 467777788888888888888877762 2 323333555444444433332111 1222222222
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 003451 707 FAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 707 ~~~~~~g~~~~A~~~~~~~~~ 727 (819)
.|.-.++...|..+++...+
T Consensus 196 -~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 -PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHhCCHHHHHHHHHHHHH
Confidence 34556788888877666554
No 252
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.24 E-value=4.4 Score=32.81 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003451 750 FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 750 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
.-+..+-++.+...++.|++.+....+.+|.+.+|+--|.++++-+..+--+. ..+|..+++.|
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~-~~iY~y~lqEl 132 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYPYVIQEL 132 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-hhhHHHHHHHH
Confidence 34556666666666777888888888888888888888888887776654332 34566666554
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.87 E-value=14 Score=43.67 Aligned_cols=87 Identities=10% Similarity=0.144 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003451 419 ICTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD----IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDTFNT 494 (819)
Q Consensus 419 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 494 (819)
..-|.-++..+-+.+.++.+.++-....+.....+ ...|..+.+.+...|++++|...+-.+.+... -...+..
T Consensus 899 ~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~ 976 (1139)
T 4fhn_B 899 SCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLD 976 (1139)
T ss_dssp HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHH
Confidence 34566667777777777777766665544321112 12577778888888888888887777665533 3456666
Q ss_pred HHHHHHhcCChHH
Q 003451 495 LISAYSRCGSFDQ 507 (819)
Q Consensus 495 l~~~~~~~g~~~~ 507 (819)
|+..+|..|..+.
T Consensus 977 LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 977 FVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHCCHHH
T ss_pred HHHHHHhCCChhh
Confidence 7777776666543
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.46 E-value=3.9 Score=41.52 Aligned_cols=70 Identities=13% Similarity=0.082 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 003451 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK-----QGCKPNQNT 771 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 771 (819)
....++..+...|++++|...+..+.... .-+...+..++.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44455666667777777777777766532 22555677777777777777777777766542 466666544
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.39 E-value=2.2 Score=39.70 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=29.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 709 YCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 709 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+.+.|.+++|++....-++... -|...-..++..+|-.|+|+.|.+-++.+.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P-~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3455566666666555555421 1444445555666666666666666666555
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.56 E-value=23 Score=32.98 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=30.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 674 YSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
..+.|++++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 345566666666666555543 22455555556666666666666666666555
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.05 E-value=28 Score=33.52 Aligned_cols=82 Identities=13% Similarity=0.089 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhHHH
Q 003451 627 PDIPTLNAMISIYGRRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRS---ENFARAEDVLREILAKGIKPDIISYN 703 (819)
Q Consensus 627 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~ 703 (819)
-++.....+...|.+.+++.+|...|-. |-.-|...+..++.-+... |...++--++- .
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------R 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------H
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------H
Confidence 3677788888888888888888776642 1111344444444443333 33333222111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 003451 704 TVIFAYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~ 727 (819)
.++ .|.-.|+...|..+++...+
T Consensus 194 aVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 LVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCHHHHHHHHHHHHH
Confidence 222 24456788888888887653
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.91 E-value=5.7 Score=40.25 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=52.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRD-----SGLVPDVITYNT 739 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~ 739 (819)
...++.++...|++++|...++.+.... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445666777888888888888777652 33677888888888888888888888877764 378887765433
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=84.59 E-value=12 Score=28.67 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003451 644 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 706 (819)
Q Consensus 644 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 706 (819)
+.-+..+-+..+....+.|++.+..+.+.+|.+.+++.-|.++|+-+..+ ......+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 45566666666666677788888888888888888888888888777643 223344555544
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.82 E-value=14 Score=43.79 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=91.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003451 564 SLLHAYANGREIDQMLALSEEIYSGIIEPHAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQ 643 (819)
Q Consensus 564 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 643 (819)
.++..+...+.++-+.++..- .+.+......++.++...|++++|.+.|.+... |+..+... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l----------~~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQ----------FA 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCS----------CS
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchh----------hh
Confidence 344455555555554443321 233444445566677777777777777765432 11111000 00
Q ss_pred ChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhHHHHHHHHHHhcCCHHH
Q 003451 644 MVAKTNEILHFMNDSG--FTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPD----IISYNTVIFAYCRNGRMKE 717 (819)
Q Consensus 644 ~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~ 717 (819)
.... +..+.... ...-..-|..++..+.+.+.++.+.++-+.+++.....+ ...|..+...+...|++++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0000 01111100 011223466777778888888888888877775421112 2357778888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 003451 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADSLFVE 752 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 752 (819)
|...+-.+..... -...+..++..+|..|..++
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence 9888877766433 34566777777776665433
No 261
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.76 E-value=33 Score=33.30 Aligned_cols=111 Identities=16% Similarity=0.114 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHHH
Q 003451 317 YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELK----TQMVEIGITPDVFTYTTLLS 392 (819)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~pd~~~~~~l~~ 392 (819)
|.++..-|.+.+++++|.+++-.- ...+.+.|+...|-++. +-+.+.++++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555577788888888876543 23355566666555544 44445567777766666666
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----CC--CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 003451 393 GFEKAGKDE-SAMKVFEEMRS----AG--CKPNICTFNALIKMHGNRGNFVEMMKVF 442 (819)
Q Consensus 393 ~~~~~g~~~-~A~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 442 (819)
.+.....-+ .-..+++++++ .| -.-|......+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 665443211 11223333321 12 2236667777888888888888888776
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.71 E-value=8.7 Score=29.14 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003451 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+ +.||.+.|-.|.. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45566655555555432 1111111133455666666666665554 4566666555543 24555555555554
Q ss_pred HHHHcC
Q 003451 374 QMVEIG 379 (819)
Q Consensus 374 ~m~~~g 379 (819)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 554443
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.77 E-value=8.5 Score=29.15 Aligned_cols=78 Identities=18% Similarity=0.096 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 003451 294 LHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYARDGLLEEAMELKT 373 (819)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 373 (819)
..++|..+-+.+...+. ...+--.-+..+...|++++|..+.+.+ +.||.+.|-.|.. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45566655555555432 1111111133455666666666665554 4566666555443 24555555555555
Q ss_pred HHHHcC
Q 003451 374 QMVEIG 379 (819)
Q Consensus 374 ~m~~~g 379 (819)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555443
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.75 E-value=42 Score=32.35 Aligned_cols=168 Identities=15% Similarity=0.038 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCHHHHHH----HHHHHHhCCCCCCHHHHHH
Q 003451 209 YAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMGMPWNKIMA----LVEGMKSAGVKPDSYTFNT 284 (819)
Q Consensus 209 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~~a~~----~~~~~~~~~~~p~~~~~~~ 284 (819)
..|.++...|.+++++++|++++..-.. .+.+.| ++..|.+ +++-..+.+++++......
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~-Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAK-QGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTT-CHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCC-CcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3566778889999999999988754321 122333 3433333 3455555667777777777
Q ss_pred HHHHHHcCCCHH-HHHHHHHHH----HHCCC--CCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 003451 285 LISCCRRGSLHE-EAAGVFEEM----KLAGF--SPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLIS 357 (819)
Q Consensus 285 ll~~~~~~g~~~-~a~~~~~~~----~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 357 (819)
++..+.....-+ +=.++++++ .+.|- .-+......+...|.+.|++.+|+..|-- |..-+...+..++.
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~ 173 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLW 173 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHH
Confidence 776655432111 112222333 22221 23556677777888888888888776631 11113444444444
Q ss_pred HHHHc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 358 AYARD---GLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMR 411 (819)
Q Consensus 358 ~~~~~---g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 411 (819)
-+... |...++-- ..-.. +-.|...|+...|..+++...
T Consensus 174 ~w~~~~~~~~~~e~dl--------------f~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 174 DWLCQVDDIEDSTVAE--------------FFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHTTCCCHHHHHH--------------HHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcchHHH--------------HHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 44443 44333211 11112 223445677888877777654
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.04 E-value=21 Score=31.61 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 003451 701 SYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPN 768 (819)
Q Consensus 701 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 768 (819)
.|..+++.+ ..++..++.++|..|...|+--. ...|...+..+...|++.+|..+++.-++.+-+|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344444432 24557799999999988776543 34677888888889999999999999998877883
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.83 E-value=53 Score=32.96 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=41.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHhhC--CCCCCHHHH----
Q 003451 599 TLILVYSKSDLLMDTERAFLELKKK--GFSPD---IPTLNAMISIYGRRQMVAKTNEILHFMNDS--GFTPSLTTY---- 667 (819)
Q Consensus 599 ~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~---- 667 (819)
.++..|...|++.+|..++..+.+. ..... ...+..-+..|...+++.++...+...... .+.+++...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3555566666666666555555431 11101 122334444555566666666655554322 112222221
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHH
Q 003451 668 NTLMYMYS-RSENFARAEDVLREI 690 (819)
Q Consensus 668 ~~l~~~~~-~~g~~~~A~~~~~~~ 690 (819)
..-+..+. ..+++..|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 11122334 556666665555544
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.59 E-value=11 Score=33.40 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 003451 677 SENFARAEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPD 733 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 733 (819)
.++..++.++|..|...|+.-. ...|...+..+...|++++|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4558899999999998776544 77888888999999999999999999998877773
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.58 E-value=21 Score=36.62 Aligned_cols=60 Identities=15% Similarity=0.040 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAK--GIKPDIISYNTVIFAYCRNGRMKEASRIFSEMR 726 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 726 (819)
...++..|.+.|++++|.+.+.++... +..--...+..++..+...+++..+...+.++.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334445555555555555555554432 111113444444444555555555555544443
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=79.48 E-value=20 Score=29.05 Aligned_cols=62 Identities=18% Similarity=0.191 Sum_probs=41.8
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 003451 644 MVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVI 706 (819)
Q Consensus 644 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 706 (819)
+.-+..+-+..+....+.|++.+....+.+|.+.+|+.-|.++|+-+..+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44455666666666677788888888888888888888888888777643 233444565554
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=78.29 E-value=79 Score=34.09 Aligned_cols=204 Identities=8% Similarity=-0.048 Sum_probs=110.5
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHH
Q 003451 572 GREIDQMLALSEEIYSGI-IEPHA--VLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKT 648 (819)
Q Consensus 572 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 648 (819)
..+.+.|...+....... ..+.. .....++......+...++...+....... .+.....-.+....+.|+++.|
T Consensus 227 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 347788888888876433 22211 122333334444453556666666655442 3433344444444567899999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 649 NEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 649 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
...|+.|.... .......--+..++...|+.++|..+|+.+.+. . ..|..+. ..+.|..-.. . . .
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~lA--a~~Lg~~~~~-~----~--~ 369 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMVA--AQRIGEEYEL-K----I--D 369 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHHH--HHHTTCCCCC-C----C--C
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHHH--HHHcCCCCCC-C----C--C
Confidence 99998886532 123333344566777889999999999988752 1 1233221 2223321000 0 0 0
Q ss_pred CCCC---CHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHh
Q 003451 729 GLVP---DVI---TYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNL 795 (819)
Q Consensus 729 g~~p---~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 795 (819)
...+ ... .-...+..+...|...+|...+..+.+. .+..-...++......|..+.++....+.
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0000 000 1122344577788888888888777653 23333345555566777777776655543
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.14 E-value=18 Score=37.22 Aligned_cols=99 Identities=9% Similarity=-0.006 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHhH--H
Q 003451 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGF--TPSLTTYNTLMYMYSRSENFARAEDVLREILA---KGIKPDIIS--Y 702 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~--~ 702 (819)
.+...++..|.+.|++++|.+.+.++..... ..-...+-..++.+...+++..+...++++.. .+..++... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3567899999999999999999999987532 23345677888999999999999999998863 232333221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 703 NTVIFAYCRNGRMKEASRIFSEMRDS 728 (819)
Q Consensus 703 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 728 (819)
..-+..+...+++.+|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11223345678899999988887654
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=67.93 E-value=26 Score=29.37 Aligned_cols=52 Identities=15% Similarity=0.225 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003451 716 KEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 767 (819)
+++.++|..|...|+--. ...|...+..+...|++.+|..+++.-++.+-+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346677777776655432 2355566666667777777777777777666666
No 273
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=66.37 E-value=41 Score=32.31 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=11.4
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 003451 675 SRSENFARAEDVLREILA 692 (819)
Q Consensus 675 ~~~g~~~~A~~~~~~~~~ 692 (819)
...|++++|+..|+.++.
T Consensus 125 ~t~gKf~eAl~~Fr~iL~ 142 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAIY 142 (325)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHH
Confidence 456667777666666653
No 274
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.71 E-value=61 Score=27.18 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=29.8
Q ss_pred HHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 003451 683 AEDVLREILAKGIKPD-IISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVP 732 (819)
Q Consensus 683 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 732 (819)
+.++|..|..+|+.-. ...|...+..+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5666666665554332 4555566666666666666666666666655555
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=63.79 E-value=37 Score=28.94 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 003451 716 KEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQ 769 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 769 (819)
+++.++|..|...|+--. ...|...+..+...|++.+|.++++..++.+-+|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 346667777777665433 335566666677778888888888887777767743
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.91 E-value=48 Score=25.25 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003451 328 RRPKEAMQVLREMKINGCLPSIVTYNSLI--SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMK 405 (819)
Q Consensus 328 g~~~~A~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~ 405 (819)
...++|..+-+.+...|. .-...|| ..+...|+|++|..+.+.+ +.||...|..|.. .+.|..+++..
T Consensus 21 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE----EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 345666666666665532 2222333 3466788888888876544 4678777766543 36777777777
Q ss_pred HHHHHHHCC
Q 003451 406 VFEEMRSAG 414 (819)
Q Consensus 406 ~~~~~~~~~ 414 (819)
.+..+..+|
T Consensus 91 rL~~la~sg 99 (116)
T 2p58_C 91 RLNRLARSQ 99 (116)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHhCC
Confidence 777776665
No 277
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.67 E-value=47 Score=25.29 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHhhHHHHH--HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003451 328 RRPKEAMQVLREMKINGCLPSIVTYNSLI--SAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMK 405 (819)
Q Consensus 328 g~~~~A~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~ 405 (819)
...++|..+-+.+...|. .-...|| ..+...|+|++|..+.+.+ +.||...|..|.. .+.|..+++..
T Consensus 20 H~HqEA~tIAdwL~~~~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ----DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc----HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 345666666666655432 2222333 3466788888888776543 4678777766543 47788888877
Q ss_pred HHHHHHHCC
Q 003451 406 VFEEMRSAG 414 (819)
Q Consensus 406 ~~~~~~~~~ 414 (819)
.+..+..+|
T Consensus 90 rL~~la~sg 98 (115)
T 2uwj_G 90 RLAGLGGSS 98 (115)
T ss_dssp HHHHHHTCS
T ss_pred HHHHHHhCC
Confidence 777777665
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.29 E-value=83 Score=26.78 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHH
Q 003451 751 VEALDVVRYMIKQGCKP-NQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKE 805 (819)
Q Consensus 751 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 805 (819)
+++.++|..|...|+-- -+..|...+..+-..|++.+|.++++..++.+-.+...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 45888999999988777 46778889999999999999999999999988777444
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=57.77 E-value=2.1e+02 Score=30.85 Aligned_cols=330 Identities=11% Similarity=0.064 Sum_probs=158.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHH
Q 003451 282 FNTLISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVTYNSLISAYAR 361 (819)
Q Consensus 282 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 361 (819)
|.....+ .+.|+...+..+...+...-+. ....|..|.... .....++....+++-.. .+.....-+..+..+.+
T Consensus 10 ~~~a~~a-~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 10 YAQIKQA-WDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANPT--LPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHH-HHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHh
Confidence 3333333 3456777666665554332111 111333322221 12244555555444311 11111222334555666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 003451 362 DGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGKDESAMKVFEEMRSAGCKPNICTFNALIKMHGNRGNFVEMMKV 441 (819)
Q Consensus 362 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 441 (819)
.+++...+.++.. .+.+...-+....+....|+.++|......+-..|-. .......++..+.+.|.+
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l------ 152 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ------ 152 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS------
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC------
Confidence 6676666654432 1334444455566666777766666666555544322 222233344444333322
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 003451 442 FDEINKCNCKPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFIPERDT-FNTLISAYSRCGSFDQAMSIYKRMLEAGV 520 (819)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 520 (819)
.+...|.- +......|+...|..+...+ .++... ...++..+.. ...+...... .
T Consensus 153 ----------t~~~~~~R-~~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~~---p~~~~~~~~~---~-- 208 (618)
T 1qsa_A 153 ----------DPLAYLER-IRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLANN---PNTVLTFART---T-- 208 (618)
T ss_dssp ----------CHHHHHHH-HHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHHC---GGGHHHHHHH---S--
T ss_pred ----------CHHHHHHH-HHHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHhC---hHhHHHHHhc---c--
Confidence 11122222 23344455555555544322 222222 2223322222 2222222211 1
Q ss_pred CCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHccCCHHHHHHHHHHHHhCCCCCC
Q 003451 521 TPDLS---TYNAVLAALARGGMWEQSEKIFAEMKGGRCKPNELTYSSLLH----AYANGREIDQMLALSEEIYSGIIEPH 593 (819)
Q Consensus 521 ~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~ 593 (819)
.++.. .+...+.-+.+ .+.+.|...+....+.. ..+......+-. .....+...++...+....... .+
T Consensus 209 ~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~ 284 (618)
T 1qsa_A 209 GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QS 284 (618)
T ss_dssp CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CC
T ss_pred CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CC
Confidence 12222 12222333333 47899999998886533 234333333322 2333442445555666555432 33
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 003451 594 AVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGRRQMVAKTNEILHFMND 657 (819)
Q Consensus 594 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 657 (819)
.....-.+....+.|+++.|...|..+..... ......--+..++...|+.++|..+|..+..
T Consensus 285 ~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 285 TSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 33344444445567999999999998865321 1344455666778889999999999999875
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.30 E-value=36 Score=30.67 Aligned_cols=52 Identities=21% Similarity=0.344 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 003451 716 KEASRIFSEMRDSGLVPD-VITYNTFVASYAADSLFVEALDVVRYMIKQGCKP 767 (819)
Q Consensus 716 ~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 767 (819)
+++.++|..|...|+--. ...|...+..+...|++.+|..+|+.-++.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 567778888887766433 3456677777778888888888888888777777
No 281
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=48.60 E-value=83 Score=30.98 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR--MKEASRIFSEMRDSGLVPD 733 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~ 733 (819)
...++.-|...|+.++|...++++..-.+. ...+...+..++-+.++ .+...+++..+...|+-..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 467777888889999999999888532111 13344444455544333 4557777777777766543
No 282
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.77 E-value=61 Score=31.08 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=12.4
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 003451 674 YSRSENFARAEDVLREILA 692 (819)
Q Consensus 674 ~~~~g~~~~A~~~~~~~~~ 692 (819)
+...|++++|+..|+.++.
T Consensus 112 ~~t~gKf~eAl~~Fr~iL~ 130 (320)
T 3mkr_B 112 LTTVGKFEEAVEKFRSILL 130 (320)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHH
Confidence 3456677777777776664
No 283
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=42.43 E-value=44 Score=31.41 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=5.0
Q ss_pred HHHHHHHHHCCC
Q 003451 404 MKVFEEMRSAGC 415 (819)
Q Consensus 404 ~~~~~~~~~~~~ 415 (819)
.++++.+.+.|.
T Consensus 199 ~~i~~~Ll~~g~ 210 (285)
T 1wdy_A 199 EAITHLLLDHGA 210 (285)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 344444444443
No 284
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.11 E-value=1.5e+02 Score=34.11 Aligned_cols=127 Identities=10% Similarity=0.103 Sum_probs=70.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 003451 670 LMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL 749 (819)
Q Consensus 670 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 749 (819)
++..+...|.++-|.++. .. ++.++..-..++.+|...|++++|...|+++- .|+..+..... .
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~-~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~----------~ 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------V 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GG-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCG----------G
T ss_pred HHHHHHHhcHHHHHHHHH----hh-cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCccccc----------c
Confidence 556666777776655433 21 23344444456778888888888888887753 23322110000 0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCHHHHHHHHHHH
Q 003451 750 FVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTKELECKLSDRI 814 (819)
Q Consensus 750 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~l 814 (819)
......++... +. .......|.+++..+-+.|-++.++.+.+.+++.-..+++..-..|...+
T Consensus 880 ~~~~~~ll~~~-e~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~ 942 (950)
T 4gq2_M 880 LREFQEIAEKY-HH-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHET 942 (950)
T ss_dssp GHHHHHHHHHT-TT-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHH
T ss_pred hhhhhhccCcc-cc-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 00111111100 00 01123467788888889999999999999998765555555333444443
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.08 E-value=1.4e+02 Score=29.32 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 003451 353 NSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGK--DESAMKVFEEMRSAGCKP 417 (819)
Q Consensus 353 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~ 417 (819)
+.++.-|...|+.++|.+.++++..-.+. .......+..++-+.++ .+...+++..+...|+-.
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 55667777778888888887777532111 12334444444443332 344666666666665443
No 286
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.77 E-value=1.8e+02 Score=26.48 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=11.7
Q ss_pred HHHHHhCCChHHHHHHHHHHH
Q 003451 321 LDVYGKCRRPKEAMQVLREMK 341 (819)
Q Consensus 321 ~~~~~~~g~~~~A~~~~~~~~ 341 (819)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 445555566666665555543
No 287
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=40.75 E-value=60 Score=30.41 Aligned_cols=10 Identities=0% Similarity=-0.240 Sum_probs=4.5
Q ss_pred HHHHcCCCHH
Q 003451 287 SCCRRGSLHE 296 (819)
Q Consensus 287 ~~~~~~g~~~ 296 (819)
...++.|+.+
T Consensus 10 ~~A~~~g~~~ 19 (285)
T 1wdy_A 10 IKAVQNEDVD 19 (285)
T ss_dssp HHHHHTTCHH
T ss_pred HHHHHcCCHH
Confidence 3344445544
No 288
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=39.45 E-value=1e+02 Score=29.64 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 003451 667 YNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR--MKEASRIFSEMRDSGLVPD 733 (819)
Q Consensus 667 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~p~ 733 (819)
...++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+...+++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 456777788889999999999888521111 12333444444444333 4556677777776666543
No 289
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.85 E-value=1e+02 Score=27.83 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=20.9
Q ss_pred HHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 003451 647 KTNEILHFMNDSGFTPS-LTTYNTLMYMYSRSENFARAEDVLREILAKG 694 (819)
Q Consensus 647 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 694 (819)
++.++|..|...|+.-. ...|......+...|++++|.++|+.-++.+
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34444444444443222 2234444444444455555555554444433
No 290
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=33.22 E-value=2.5e+02 Score=24.62 Aligned_cols=92 Identities=11% Similarity=-0.028 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003451 662 PSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFV 741 (819)
Q Consensus 662 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 741 (819)
++..+-...+.++.+.++. ++...+.++.+ .++..+-...+.++...|.. ++...+.++.+ .++..+-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 3444444444444444442 22333333332 23444444444444444442 23333333332 23444444444
Q ss_pred HHHHhcCChHHHHHHHHHHHH
Q 003451 742 ASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 742 ~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.++...+. .++...+..+.+
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHhCc-hhHHHHHHHHHh
Confidence 45554443 444444555443
No 291
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.31 E-value=43 Score=30.47 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=9.3
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 003451 214 LITTYASNGRYREAVMVF 231 (819)
Q Consensus 214 li~~~~~~g~~~~A~~~~ 231 (819)
.+...++.|+.+-+..++
T Consensus 45 ~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHH
Confidence 445556667655443333
No 292
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=31.94 E-value=2.3e+02 Score=23.92 Aligned_cols=60 Identities=3% Similarity=-0.056 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHH------HHHHcCCHHHHHHHHHHHHH
Q 003451 176 IAVLISMLGKEGKVSVAASLLHGLHKDGFDI--DVYAYTSLIT------TYASNGRYREAVMVFKKMEE 236 (819)
Q Consensus 176 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~ 236 (819)
|...+..+.. |++-+|-++++.+.+....+ ....|..||. ...+.|+...|..+|.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3333444433 88888888888887765444 4556667776 23468999999999988765
No 293
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.17 E-value=1.4e+02 Score=24.16 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 003451 353 NSLISAYARDGLLEEAMELKTQMV 376 (819)
Q Consensus 353 ~~li~~~~~~g~~~~A~~~~~~m~ 376 (819)
..++.-|...|+.++|.+.++++.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555555553
No 294
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.50 E-value=53 Score=29.78 Aligned_cols=16 Identities=13% Similarity=-0.159 Sum_probs=7.3
Q ss_pred HHHHHhCCChHHHHHH
Q 003451 321 LDVYGKCRRPKEAMQV 336 (819)
Q Consensus 321 ~~~~~~~g~~~~A~~~ 336 (819)
+...++.|+.+-+.-+
T Consensus 46 L~~A~~~~~~~~v~~L 61 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYY 61 (240)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHHhCCHHHHHHH
Confidence 3444555655443333
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.33 E-value=85 Score=28.45 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=6.1
Q ss_pred HhCCChHHHHHHHH
Q 003451 325 GKCRRPKEAMQVLR 338 (819)
Q Consensus 325 ~~~g~~~~A~~~~~ 338 (819)
+..|+.+-+..+++
T Consensus 87 ~~~~~~~~~~~Ll~ 100 (241)
T 1k1a_A 87 CEHRSPTCLRALLD 100 (241)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455444444433
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.56 E-value=2.8e+02 Score=25.29 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=13.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 003451 286 ISCCRRGSLHEEAAGVFEEMKL 307 (819)
Q Consensus 286 l~~~~~~g~~~~a~~~~~~~~~ 307 (819)
++.+....++++|.+++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4455666667777666665543
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=28.95 E-value=77 Score=28.76 Aligned_cols=84 Identities=10% Similarity=-0.025 Sum_probs=39.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHh--HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHH
Q 003451 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVT--YNALLDVYGKCRRPKEAMQVLREMKINGCLPSIVT--YNSLISAYAR 361 (819)
Q Consensus 286 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~--~~~li~~~~~ 361 (819)
+...++.|+.+.+..+++.+...|..++... ..+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~ 88 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLACE 88 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHHH
Confidence 4445566777777777766666554443221 11233444556665433 33334444433221 1122333445
Q ss_pred cCCHHHHHHHHH
Q 003451 362 DGLLEEAMELKT 373 (819)
Q Consensus 362 ~g~~~~A~~~~~ 373 (819)
.|+.+-+..+++
T Consensus 89 ~~~~~~~~~Ll~ 100 (241)
T 1k1a_A 89 HRSPTCLRALLD 100 (241)
T ss_dssp TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 666554444443
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.55 E-value=3.2e+02 Score=28.46 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHH--HH-HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 003451 630 PTLNAMISIYGRRQMVAKTNEILHFMNDSGF-TPSLT--TY-NTLMYMYSRSENFARAEDVLREILAK 693 (819)
Q Consensus 630 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~--~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 693 (819)
..+|.++..|...+.++.|..+..+..--.. .++.. .| -.++..+.-.+++.+|.+.+..+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4466777777777777777777776642100 11111 12 23345556667777777777766653
No 299
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=27.99 E-value=1.4e+02 Score=21.20 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=12.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 003451 739 TFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 739 ~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
.++..+...|++++|...+-+++.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~ 45 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIA 45 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555555555554444444
No 300
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=27.44 E-value=5.1e+02 Score=26.39 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----hHHHHHHHHHHHHcC
Q 003451 711 RNGRMKEASRIFSEMRDSGLVPDVITYNTFVASYAADSL-----FVEALDVVRYMIKQG 764 (819)
Q Consensus 711 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~ 764 (819)
+.++.+.|+.++.+|.+.|..|....-..+..+.-.-|. ..-|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 457888899999999888877655444444444444443 333444444444444
No 301
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=27.12 E-value=2.9e+02 Score=23.55 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=30.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CC--------------H-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 708 AYCRNGRMKEASRIFSEMRDSGLV--PD--------------V-ITYNTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 708 ~~~~~g~~~~A~~~~~~~~~~g~~--p~--------------~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
+|.+.+++..|...++.+++..+. || . ..++.++..+...|+.+||++.+..--.
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 455667777777777777754333 21 1 1344455555556666666666555443
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.65 E-value=4e+02 Score=30.55 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcC
Q 003451 420 CTFNALIKMHGNRGNFVEMMKVFDEINKCNCKPD----IVTWNTLLAVFGQNG 468 (819)
Q Consensus 420 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g 468 (819)
.-|..++..+-+.+.++.+.++-+...+.--.-| ...|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 4667777778888888888777777665422222 235666676666544
No 303
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.20 E-value=1.5e+02 Score=30.74 Aligned_cols=64 Identities=17% Similarity=0.182 Sum_probs=34.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH--HHH-HHHHHHHHhcCChHHHHHHHHHHHH
Q 003451 699 IISYNTVIFAYCRNGRMKEASRIFSEMRDS-GLVPDV--ITY-NTFVASYAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 699 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~ 762 (819)
...+|.+++.|...+.++.|..+..+..-- .-.++. ..| ..++..+.-.++|.+|.+.+..+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 455666666666666666666666665310 000111 122 2344555566666666666666654
No 304
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.11 E-value=1.2e+02 Score=29.24 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=15.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 003451 317 YNALLDVYGKCRRPKEAMQVLREM 340 (819)
Q Consensus 317 ~~~l~~~~~~~g~~~~A~~~~~~~ 340 (819)
...++.-|...|+.++|...++++
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el 29 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDL 29 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh
Confidence 345666666777777777776665
No 305
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.07 E-value=1.1e+02 Score=28.83 Aligned_cols=14 Identities=14% Similarity=-0.017 Sum_probs=6.4
Q ss_pred HHHHHhCCChHHHH
Q 003451 321 LDVYGKCRRPKEAM 334 (819)
Q Consensus 321 ~~~~~~~g~~~~A~ 334 (819)
+...+..|+.+-+.
T Consensus 66 L~~A~~~g~~~~v~ 79 (285)
T 3kea_A 66 LHQAATLEDTKIVK 79 (285)
T ss_dssp HHHHTTSSSCHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 33344555554333
No 306
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.23 E-value=5.5e+02 Score=26.09 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=33.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHCCC
Q 003451 361 RDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEKAGK-----DESAMKVFEEMRSAGC 415 (819)
Q Consensus 361 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~ 415 (819)
+.++.+.|+..+.+|.+.|..|....-..+..+....|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 346777777777788777766655555555555544443 3345555555555553
No 307
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=23.93 E-value=3.4e+02 Score=23.18 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=81.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC---------------HhHHH
Q 003451 641 RRQMVAKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIK--PD---------------IISYN 703 (819)
Q Consensus 641 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~---------------~~~~~ 703 (819)
-.|.+..++-++.... +..+.-.-.-+|.+.+++..|+..++.++...+. || ...|+
T Consensus 45 yngEY~R~Lf~L~~lN------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 45 LNGEYTRALFHLHKLN------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HTTCHHHHHHHHHTCC------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hcchHhHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 3566666665554321 1111111223456677777777777777743222 11 34567
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----------HhcCC-------hHHHH--------HHH
Q 003451 704 TVIFAYCRNGRMKEASRIFSEMRDSGLVPDVITYNTFVASY-----------AADSL-------FVEAL--------DVV 757 (819)
Q Consensus 704 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-----------~~~g~-------~~~A~--------~~~ 757 (819)
.++..|.+.|+.+||+..+..-... .|=..+...++-.- ...|+ +.... ..+
T Consensus 119 l~a~lltq~g~r~EaI~y~~~Sf~~--~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~i 196 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVRSFGK--SFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLV 196 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHhcCHHHhhhHhhhhcCC--ccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHH
Confidence 7778888888888888877654432 11111111111000 00000 01111 223
Q ss_pred HHHHHcCCCCCHHHHH--HHHHHHHhcCCHhHHHHHHHHhhhcCCC
Q 003451 758 RYMIKQGCKPNQNTYN--SIVDGYCKLNQRYEAITFVNNLSKLDPH 801 (819)
Q Consensus 758 ~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 801 (819)
++-.+ ..|-...|. ..+..|...|..++.+..+..+..++|.
T Consensus 197 kkY~n--~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 197 KKYME--HVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHT--STTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHH--hCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 33333 566544433 4566788999999999999999999885
No 308
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=23.67 E-value=2.9e+02 Score=22.24 Aligned_cols=63 Identities=17% Similarity=0.330 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 003451 668 NTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGR--MKEASRIFSEMRDSGLV 731 (819)
Q Consensus 668 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~g~~ 731 (819)
..++.-|...|+.++|...++++..-.+. ...+...+..++-+.+. .+.+.+++..+.+.|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34555566666666666666665311000 12223333333333321 34455555555555544
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.25 E-value=3.2e+02 Score=22.66 Aligned_cols=58 Identities=12% Similarity=0.211 Sum_probs=31.3
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003451 199 LHKDGFDIDVYAYTSLITTYASNGRYREAVMVFKKMEEEGCKPTLITYNVILNVYGKMG 257 (819)
Q Consensus 199 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 257 (819)
+.+.|.. ....-..++..+...+..-.|.++++.+.+.+...+..|--..+..+...|
T Consensus 18 l~~~g~r-~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLK-NSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC---CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCC-CCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344544 233444555555555555666677776666655555555555555555555
No 310
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.21 E-value=1.4e+02 Score=24.97 Aligned_cols=84 Identities=8% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 003451 352 YNSLISAYARDGLLEEAMELKTQMVEIGITPDVFTYTTLLSGFEK--AGKDESAMKVFEEMRSAGCKPNICTFNALIKMH 429 (819)
Q Consensus 352 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 429 (819)
.+.++.-|...|+.++|.+.++++..-.+. .......+..++-+ ....+.+..++..+...++-........+...+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Q ss_pred HccCCHH
Q 003451 430 GNRGNFV 436 (819)
Q Consensus 430 ~~~g~~~ 436 (819)
....++.
T Consensus 91 ~~ldDl~ 97 (152)
T 2ion_A 91 NEIPDIN 97 (152)
T ss_dssp HHHHHHH
T ss_pred HhChHhc
No 311
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=22.90 E-value=4.5e+02 Score=24.22 Aligned_cols=150 Identities=15% Similarity=0.093 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC-CHHHHHHHHHH
Q 003451 646 AKTNEILHFMNDSGFTPSLTTYNTLMYMYSRSENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNG-RMKEASRIFSE 724 (819)
Q Consensus 646 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 724 (819)
..+...+..+.. .++..+-...+.++...|+. .+...+..+.+ .++...-...+.++...| ...++...+..
T Consensus 127 ~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~ 199 (280)
T 1oyz_A 127 PKIVEQSQITAF---DKSTNVRRATAFAISVINDK-ATIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVE 199 (280)
T ss_dssp HHHHHHHHHHTT---CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 344455444443 35666666666666666653 34455555554 245544445555555554 23455555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHhhhcCCCCCH
Q 003451 725 MRDSGLVPDVITYNTFVASYAADSLFVEALDVVRYMIKQGCKPNQNTYNSIVDGYCKLNQRYEAITFVNNLSKLDPHVTK 804 (819)
Q Consensus 725 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 804 (819)
+.+ .++..+-...+.++...|. .+++..+..+.+. ++ +-...+.++.+.|+ .++...+.++.+..++.
T Consensus 200 ~l~---d~~~~vR~~A~~aL~~~~~-~~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~~~~-- 267 (280)
T 1oyz_A 200 MLQ---DKNEEVRIEAIIGLSYRKD-KRVLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLYKFDDN-- 267 (280)
T ss_dssp HTT---CSCHHHHHHHHHHHHHTTC-GGGHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTSSCC--
T ss_pred Hhc---CCCHHHHHHHHHHHHHhCC-HhhHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcCCCc--
Confidence 553 4566666677777777775 4555555555542 33 22344556666676 46777777777654433
Q ss_pred HHHHHHHHHH
Q 003451 805 ELECKLSDRI 814 (819)
Q Consensus 805 ~~~~~l~~~l 814 (819)
......+..+
T Consensus 268 ~~~~~~~~~l 277 (280)
T 1oyz_A 268 EIITSAIDKL 277 (280)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 2224444444
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.89 E-value=42 Score=31.23 Aligned_cols=8 Identities=13% Similarity=-0.234 Sum_probs=3.8
Q ss_pred HhCCChHH
Q 003451 325 GKCRRPKE 332 (819)
Q Consensus 325 ~~~g~~~~ 332 (819)
+..|+.+-
T Consensus 101 ~~~g~~~~ 108 (260)
T 3jxi_A 101 IERRCKHY 108 (260)
T ss_dssp HHTTCHHH
T ss_pred HHcCCHHH
Confidence 44555443
No 313
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=22.50 E-value=3.5e+02 Score=23.70 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHh----------------cCCCHHHHHHHHH
Q 003451 209 YAYTSLITTYA--SNGRYREAVMVFKKMEEEGCKPTLITYNV--ILNVYGK----------------MGMPWNKIMALVE 268 (819)
Q Consensus 209 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--ll~~~~~----------------~g~~~~~a~~~~~ 268 (819)
+.+..+.+++. +.+++.+.+.+++.+.......+...-.. +...+.+ .. .++.|+.+++
T Consensus 24 fyf~~~c~aFR~~r~~dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~LD~~Fd~d~~lT-PLESAl~v~~ 102 (211)
T 3bqo_A 24 FLCLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTLDAQFENDERIT-PLESALMIWG 102 (211)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCC-HHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCCCCccCCCCCCC-hHHHHHHHHH
Q ss_pred HHHhCCCCCCHHHHHHH----HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhCCCh
Q 003451 269 GMKSAGVKPDSYTFNTL----ISCCRRGSLHEEAAGVFEEMKLAGFSPDKVTYNALLDVYGKCRRP 330 (819)
Q Consensus 269 ~~~~~~~~p~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 330 (819)
.+.+.--.+....-..+ +..|.+.|.+++|.++|++.... .++..-....+....+..+.
T Consensus 103 ~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~--~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 103 SIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD--PNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp TSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-------CCTTHHHHHHHHHTTCT
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC--CCCchHHHHHHHHHHHccCC
No 314
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=22.31 E-value=87 Score=22.98 Aligned_cols=19 Identities=16% Similarity=0.065 Sum_probs=13.1
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 003451 744 YAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~ 762 (819)
+-+.|++++|+.+|...++
T Consensus 29 ~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4567777777777776665
No 315
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=22.06 E-value=4.7e+02 Score=24.15 Aligned_cols=170 Identities=9% Similarity=0.046 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 003451 593 HAVLLKTLILVYSKSDLLMDTERAFLELKKKGFSPDIPTLNAMISIYGR-RQMVAKTNEILHFMNDSGFTPSLTTYNTLM 671 (819)
Q Consensus 593 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 671 (819)
+..-+..++....+.+++++.....+.+.+.+...+..-.|.|-.+|-. .|....+.+++..+.+..-.........++
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~i 109 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 109 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHHH
Q ss_pred HHHHhc--CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHH---CC
Q 003451 672 YMYSRS--ENFARAEDVLREILAKGIKPDIISYNTVIFAYCRNGRM-----------------KEASRIFSEMRD---SG 729 (819)
Q Consensus 672 ~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-----------------~~A~~~~~~~~~---~g 729 (819)
..|.+. ..+..-..-.-.+++..+-|+..+-..-+..+--.|++ +.|.+.|+++.+ ..
T Consensus 110 ~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~ 189 (261)
T 3ubw_A 110 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 189 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred CCCCHHHHHHHHHHHH-----hcCChHHHHHHHHHHHH
Q 003451 730 LVPDVITYNTFVASYA-----ADSLFVEALDVVRYMIK 762 (819)
Q Consensus 730 ~~p~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~ 762 (819)
+.|...+...++-.|. -.++.++|..+.+.+.+
T Consensus 190 L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 190 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 316
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.43 E-value=1.1e+02 Score=26.65 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=5.6
Q ss_pred HHHHHHHHHCCCC
Q 003451 474 SGVFKEMKRAGFI 486 (819)
Q Consensus 474 ~~~~~~m~~~~~~ 486 (819)
.++.+.+.+.|..
T Consensus 158 ~~~v~~Ll~~ga~ 170 (201)
T 3hra_A 158 QDIVKLLMENGAD 170 (201)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHCCCC
Confidence 3344444444443
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.38 E-value=3.2e+02 Score=22.63 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=21.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003451 495 LISAYSRCGSFDQAMSIYKRMLEAGVTPDLSTYNAVLAALARGG 538 (819)
Q Consensus 495 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 538 (819)
++..+...+..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444445555555555555444444444444444444444
No 318
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.26 E-value=55 Score=30.33 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=12.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCCH
Q 003451 286 ISCCRRGSLHEEAAGVFEEMKLAGFSPDK 314 (819)
Q Consensus 286 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 314 (819)
+...+..|..+- .+.+.+.|..++.
T Consensus 97 L~~A~~~g~~~~----v~~Ll~~ga~~~~ 121 (260)
T 3jxi_A 97 LHIAIERRCKHY----VELLVEKGADVHA 121 (260)
T ss_dssp HHHHHHTTCHHH----HHHHHHTTCCTTC
T ss_pred HHHHHHcCCHHH----HHHHHhCCCCcCc
Confidence 344455566653 3444445555443
No 319
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.12 E-value=3.8e+02 Score=22.65 Aligned_cols=51 Identities=8% Similarity=0.007 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 003451 677 SENFARAEDVLREILAKGIKP--DIISYNTVIF------AYCRNGRMKEASRIFSEMRD 727 (819)
Q Consensus 677 ~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 727 (819)
.|++=+|-++|+.+-.....+ ....|..||. ...+.|+..-|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777766543333 3444544544 22356777777777777665
No 320
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=20.53 E-value=99 Score=22.67 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=14.3
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 003451 744 YAADSLFVEALDVVRYMIK 762 (819)
Q Consensus 744 ~~~~g~~~~A~~~~~~~~~ 762 (819)
+-+.|++++|+.+|...++
T Consensus 21 ~D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 21 ADKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4577888888888777765
No 321
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.41 E-value=5.8e+02 Score=24.51 Aligned_cols=17 Identities=18% Similarity=-0.130 Sum_probs=9.8
Q ss_pred hcCCCHHHHHHHHHHHH
Q 003451 605 SKSDLLMDTERAFLELK 621 (819)
Q Consensus 605 ~~~~~~~~a~~~~~~~~ 621 (819)
...|++++|...|+.++
T Consensus 125 ~t~gKf~eAl~~Fr~iL 141 (325)
T 3mv2_A 125 FKLNKPDIAIECFREAI 141 (325)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 44566666666665554
No 322
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.41 E-value=2.8e+02 Score=20.97 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 003451 718 ASRIFSEMRDSGLVPDVITYNTFVASYAADS 748 (819)
Q Consensus 718 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 748 (819)
|.++.++....|+.|+..++..++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 4455555555566666666666666655554
No 323
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=20.33 E-value=5.2e+02 Score=23.92 Aligned_cols=40 Identities=5% Similarity=0.014 Sum_probs=22.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 003451 600 LILVYSKSDLLMDTERAFLELKKKG--FSPDIPTLNAMISIY 639 (819)
Q Consensus 600 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~ 639 (819)
++....+.+++++.....+++.+.+ ...+..-.|.|-.+|
T Consensus 14 ~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaY 55 (260)
T 1o9d_A 14 MAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAY 55 (260)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 3444455566666666666666654 444555455554444
Done!