BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003452
(819 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 194 bits (493), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/332 (35%), Positives = 182/332 (54%), Gaps = 8/332 (2%)
Query: 366 KGAAEMILAMCSSYYDASGNIKYLDDNEKERFQQIIQ--GMASSSLRCIAFAHKQVP-EE 422
KGA E ++ C+ Y + KE+ +I+ G +LRC+A A + P +
Sbjct: 514 KGAPEGVIDRCN-YVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 572
Query: 423 EHRNEKDQKKLIE--DNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAK 480
E D K +E +LT +G+VG+ DP R V +++ C+ AG+ + MITGDN TA
Sbjct: 573 EEMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 632
Query: 481 AIATECGILKPGQDTSTGAVLEGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLK 540
AI GI +D + A G EF + E+ E + C AR P K +V+ L+
Sbjct: 633 AICRRIGIFGENEDVADRA-YTGREFDDLPLAEQREACRRACCFARVEPTHKSKIVEYLQ 691
Query: 541 QKGHVVAVTRDGTNDAPALKETDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGR 600
+ A+T DG NDAPALK+ +IG++MG GT VAK +S++V+ DDNF+++ + GR
Sbjct: 692 SFDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGR 750
Query: 601 CVHTNIQKLIQFQLTANVAALLINFVAAVYAGEIPLTAVQLLWVNLIMDTLGALALATEK 660
++ N+++ I++ +++NV ++ F+ A L VQLLWVNL+ D L A AL
Sbjct: 751 AIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNP 810
Query: 661 PTKELMDKPPVGRTEPLITNIMWRNLVAQALY 692
P ++MD+PP EPLI+ ++ +A Y
Sbjct: 811 PDLDIMDRPPRTPKEPLISGWLFFRYMAIGGY 842
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 35/250 (14%)
Query: 118 GNDQDIARRH-EAFSSNTYKKPPSKSLFYFVVDALKDLTILILLGCAVLSLAFGIKEHGL 176
G D +RH E + N KSL+ V++ +DL + ILL A +S
Sbjct: 23 GLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVRILLLAACISFVLA------ 76
Query: 177 KEGWYEGGSILVAVF-------LVIAVSAGSNFTQNRQFDKFSKVSNNIQID---VIRNG 226
W+E G V F L++ +A Q R + + + + V R
Sbjct: 77 ---WFEEGEETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRAD 133
Query: 227 RR--QQISIFEIVVGDVICLKIGDQVPANG--LFLDGHSLQVDESSMTGES----DHVE- 277
R+ Q+I +IV GD++ + +GD+VPA+ L + +L+VD+S +TGES H E
Sbjct: 134 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEP 193
Query: 278 ------VNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQMMSQISRDNSEQTPLQARL 331
VN + LFSGT +A G A + + G+ T G++ Q++ ++TPLQ +L
Sbjct: 194 VPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAATEQDKTPLQQKL 253
Query: 332 NKLTSSTGKI 341
++ K+
Sbjct: 254 DEFGEQLSKV 263
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 182/332 (54%), Gaps = 8/332 (2%)
Query: 366 KGAAEMILAMCSSYYDASGNIKYLDDNEKERFQQIIQ--GMASSSLRCIAFAHKQVP--- 420
KGA E ++ C+ Y + KE+ +I+ G +LRC+A A + P
Sbjct: 515 KGAPEGVIDRCN-YVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 573
Query: 421 EEEHRNEKDQKKLIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAK 480
EE ++ + E +LT +G+VG+ DP R V +++ C+ AG+ + MITGDN TA
Sbjct: 574 EEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 633
Query: 481 AIATECGILKPGQDTSTGAVLEGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLK 540
AI GI ++ + A G EF + E+ E + C AR P K +V+ L+
Sbjct: 634 AICRRIGIFGENEEVADRA-YTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQ 692
Query: 541 QKGHVVAVTRDGTNDAPALKETDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGR 600
+ A+T DG NDAPALK+ +IG++MG GT VAK +S++V+ DDNF+++ + GR
Sbjct: 693 SYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGR 751
Query: 601 CVHTNIQKLIQFQLTANVAALLINFVAAVYAGEIPLTAVQLLWVNLIMDTLGALALATEK 660
++ N+++ I++ +++NV ++ F+ A L VQLLWVNL+ D L A AL
Sbjct: 752 AIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNP 811
Query: 661 PTKELMDKPPVGRTEPLITNIMWRNLVAQALY 692
P ++MD+PP EPLI+ ++ +A Y
Sbjct: 812 PDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 843
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 117/250 (46%), Gaps = 35/250 (14%)
Query: 118 GNDQDIARRH-EAFSSNTYKKPPSKSLFYFVVDALKDLTILILLGCAVLSLAFGIKEHGL 176
G D +RH E + N KSL+ V++ +DL + ILL A +S
Sbjct: 23 GLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA------ 76
Query: 177 KEGWYEGGSILVAVF-------LVIAVSAGSNFTQNRQFDKFSKVSNNIQID---VIRNG 226
W+E G + F L++ +A Q R + + + + V R
Sbjct: 77 ---WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRAD 133
Query: 227 RR--QQISIFEIVVGDVICLKIGDQVPANG--LFLDGHSLQVDESSMTGES----DHVE- 277
R+ Q+I +IV GD++ + +GD+VPA+ L + +L+VD+S +TGES H E
Sbjct: 134 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEP 193
Query: 278 ------VNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQMMSQISRDNSEQTPLQARL 331
VN + LFSGT +A G A + + G++T G++ Q++ ++TPLQ +L
Sbjct: 194 VPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKL 253
Query: 332 NKLTSSTGKI 341
++ K+
Sbjct: 254 DEFGEQLSKV 263
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 182/332 (54%), Gaps = 8/332 (2%)
Query: 366 KGAAEMILAMCSSYYDASGNIKYLDDNEKERFQQIIQ--GMASSSLRCIAFAHKQVP--- 420
KGA E ++ C+ Y + KE+ +I+ G +LRC+A A + P
Sbjct: 516 KGAPEGVIDRCN-YVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 574
Query: 421 EEEHRNEKDQKKLIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAK 480
EE ++ + E +LT +G+VG+ DP R V +++ C+ AG+ + MITGDN TA
Sbjct: 575 EEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 634
Query: 481 AIATECGILKPGQDTSTGAVLEGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLK 540
AI GI ++ + A G EF + E+ E + C AR P K +V+ L+
Sbjct: 635 AICRRIGIFGENEEVADRA-YTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQ 693
Query: 541 QKGHVVAVTRDGTNDAPALKETDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGR 600
+ A+T DG NDAPALK+ +IG++MG GT VAK +S++V+ DDNF+++ + GR
Sbjct: 694 SYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGR 752
Query: 601 CVHTNIQKLIQFQLTANVAALLINFVAAVYAGEIPLTAVQLLWVNLIMDTLGALALATEK 660
++ N+++ I++ +++NV ++ F+ A L VQLLWVNL+ D L A AL
Sbjct: 753 AIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNP 812
Query: 661 PTKELMDKPPVGRTEPLITNIMWRNLVAQALY 692
P ++MD+PP EPLI+ ++ +A Y
Sbjct: 813 PDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 844
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 117/250 (46%), Gaps = 35/250 (14%)
Query: 118 GNDQDIARRH-EAFSSNTYKKPPSKSLFYFVVDALKDLTILILLGCAVLSLAFGIKEHGL 176
G D +RH E + N KSL+ V++ +DL + ILL A +S
Sbjct: 24 GLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA------ 77
Query: 177 KEGWYEGGSILVAVF-------LVIAVSAGSNFTQNRQFDKFSKVSNNIQID---VIRNG 226
W+E G + F L++ +A Q R + + + + V R
Sbjct: 78 ---WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRAD 134
Query: 227 RR--QQISIFEIVVGDVICLKIGDQVPANG--LFLDGHSLQVDESSMTGES----DHVE- 277
R+ Q+I +IV GD++ + +GD+VPA+ L + +L+VD+S +TGES H E
Sbjct: 135 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEP 194
Query: 278 ------VNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQMMSQISRDNSEQTPLQARL 331
VN + LFSGT +A G A + + G++T G++ Q++ ++TPLQ +L
Sbjct: 195 VPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKL 254
Query: 332 NKLTSSTGKI 341
++ K+
Sbjct: 255 DEFGEQLSKV 264
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 182/332 (54%), Gaps = 8/332 (2%)
Query: 366 KGAAEMILAMCSSYYDASGNIKYLDDNEKERFQQIIQ--GMASSSLRCIAFAHKQVP--- 420
KGA E ++ C+ Y + KE+ +I+ G +LRC+A A + P
Sbjct: 515 KGAPEGVIDRCN-YVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 573
Query: 421 EEEHRNEKDQKKLIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAK 480
EE ++ + E +LT +G+VG+ DP R V +++ C+ AG+ + MITGDN TA
Sbjct: 574 EEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 633
Query: 481 AIATECGILKPGQDTSTGAVLEGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLK 540
AI GI ++ + A G EF + E+ E + C AR P K +V+ L+
Sbjct: 634 AICRRIGIFGENEEVADRA-YTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQ 692
Query: 541 QKGHVVAVTRDGTNDAPALKETDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGR 600
+ A+T DG NDAPALK+ +IG++MG GT VAK +S++V+ DDNF+++ + GR
Sbjct: 693 SYDEITAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGR 751
Query: 601 CVHTNIQKLIQFQLTANVAALLINFVAAVYAGEIPLTAVQLLWVNLIMDTLGALALATEK 660
++ N+++ I++ +++NV ++ F+ A L VQLLWVNL+ D L A AL
Sbjct: 752 AIYNNMKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNP 811
Query: 661 PTKELMDKPPVGRTEPLITNIMWRNLVAQALY 692
P ++MD+PP EPLI+ ++ +A Y
Sbjct: 812 PDLDIMDRPPRSPKEPLISGWLFFRYMAIGGY 843
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 117/250 (46%), Gaps = 35/250 (14%)
Query: 118 GNDQDIARRH-EAFSSNTYKKPPSKSLFYFVVDALKDLTILILLGCAVLSLAFGIKEHGL 176
G D +RH E + N KSL+ V++ +DL + ILL A +S
Sbjct: 23 GLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLA------ 76
Query: 177 KEGWYEGGSILVAVF-------LVIAVSAGSNFTQNRQFDKFSKVSNNIQID---VIRNG 226
W+E G + F L++ +A Q R + + + + V R
Sbjct: 77 ---WFEEGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMGKVYRAD 133
Query: 227 RR--QQISIFEIVVGDVICLKIGDQVPANG--LFLDGHSLQVDESSMTGES----DHVE- 277
R+ Q+I +IV GD++ + +GD+VPA+ L + +L+VD+S +TGES H E
Sbjct: 134 RKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEP 193
Query: 278 ------VNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQMMSQISRDNSEQTPLQARL 331
VN + LFSGT +A G A + + G++T G++ Q++ ++TPLQ +L
Sbjct: 194 VPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAATEQDKTPLQQKL 253
Query: 332 NKLTSSTGKI 341
++ K+
Sbjct: 254 DEFGEQLSKV 263
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 180/330 (54%), Gaps = 26/330 (7%)
Query: 366 KGAAEMILAMCSSYYDASGNIKYLDDNEKERFQQIIQGMASSSLRCIAFAHKQVPEEEHR 425
KGA E IL CSS G + LD+ K+ FQ + R + F H +P+E+
Sbjct: 483 KGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFP 541
Query: 426 N----EKDQKKLIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKA 481
+ D DNL +GL+ + DP R V AV C+ AG+ + M+TGD+ TAKA
Sbjct: 542 EGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA 601
Query: 482 IATECGILKPGQDT-------------------STGAVLEGEEFRNYTHEE--RMEKVDK 520
IA GI+ G +T + V+ G + ++ T E+ + K
Sbjct: 602 IAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHT 661
Query: 521 ICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDAPALKETDIGLSMGIQGTEVAKESS 580
V AR+SP KL++V+ +++G +VAVT DG ND+PA K+ DIG++MGI G++V+K+++
Sbjct: 662 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAA 721
Query: 581 DIVILDDNFASVARVLRWGRCVHTNIQKLIQFQLTANVAALLINFVAAVYAGEIPLTAVQ 640
D+++LDDNFAS+ + GR + N++K I + LT+N+ + + + +PL V
Sbjct: 722 DMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVT 781
Query: 641 LLWVNLIMDTLGALALATEKPTKELMDKPP 670
+L ++L D + A++LA E+ ++M + P
Sbjct: 782 ILCIDLGTDMVPAISLAYEQAESDIMKRQP 811
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 122/272 (44%), Gaps = 33/272 (12%)
Query: 79 DQTSLVELVKMKD----LDKLHEFGGIRGVASALETDFDAGIFGNDQDIARRHEAFS--- 131
D L + V M D LD+LH G TD G+ AR E +
Sbjct: 6 DMDELKKEVSMDDHKLSLDELHRKYG---------TDLSRGL-----TPARAAEILARDG 51
Query: 132 SNTYKKPPSKSLFY-FVVDALKDLTILILLGCAVLSLAFGIKEHGLKEGWYEGGSILVAV 190
N PP+ + F ++L+ +G + LA+GI+ +E + + V +
Sbjct: 52 PNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVL 111
Query: 191 FLVIAVSAGSNFTQNRQFDKFSKVSNNI---QIDVIRNGRRQQISIFEIVVGDVICLKIG 247
V+ ++ ++ Q + K + N+ Q VIRNG + I+ E+VVGD++ +K G
Sbjct: 112 SAVVIITGCFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGG 171
Query: 248 DQVPANGLFLDGHSLQVDESSMTGESDHVEVN---SSQNPF-----LFSGTKVADGYARM 299
D++PA+ + + +VD SS+TGES+ + +++NP F T +G AR
Sbjct: 172 DRIPADLRIISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARG 231
Query: 300 LATSVGMNTTWGQMMSQISRDNSEQTPLQARL 331
+ G T G++ + S QTP+ A +
Sbjct: 232 IVVYTGDRTVMGRIATLASGLEGGQTPIAAEI 263
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 180/330 (54%), Gaps = 26/330 (7%)
Query: 366 KGAAEMILAMCSSYYDASGNIKYLDDNEKERFQQIIQGMASSSLRCIAFAHKQVPEEEHR 425
KGA E IL CSS G + LD+ K+ FQ + R + F H +P+E+
Sbjct: 477 KGAPERILDRCSSIL-IHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFP 535
Query: 426 N----EKDQKKLIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKA 481
+ D DNL +GL+ + DP R V AV C+ AG+ + M+TGD+ TAKA
Sbjct: 536 EGFQFDTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA 595
Query: 482 IATECGILKPGQDT-------------------STGAVLEGEEFRNYTHEE--RMEKVDK 520
IA GI+ G +T + V+ G + ++ T E+ + K
Sbjct: 596 IAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHT 655
Query: 521 ICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDAPALKETDIGLSMGIQGTEVAKESS 580
V AR+SP KL++V+ +++G +VAVT DG ND+PA K+ DIG++MGI G++V+K+++
Sbjct: 656 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAA 715
Query: 581 DIVILDDNFASVARVLRWGRCVHTNIQKLIQFQLTANVAALLINFVAAVYAGEIPLTAVQ 640
D+++LDDNFAS+ + GR + N++K I + LT+N+ + + + +PL V
Sbjct: 716 DMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVT 775
Query: 641 LLWVNLIMDTLGALALATEKPTKELMDKPP 670
+L ++L D + A++LA E+ ++M + P
Sbjct: 776 ILCIDLGTDMVPAISLAYEQAESDIMKRQP 805
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 119/264 (45%), Gaps = 33/264 (12%)
Query: 87 VKMKD----LDKLHEFGGIRGVASALETDFDAGIFGNDQDIARRHEAFS---SNTYKKPP 139
V M D LD+LH G TD G+ AR E + N PP
Sbjct: 8 VSMDDHKLSLDELHRKYG---------TDLSRGL-----TPARAAEILARDGPNALTPPP 53
Query: 140 SKSLFY-FVVDALKDLTILILLGCAVLSLAFGIKEHGLKEGWYEGGSILVAVFLVIAVSA 198
+ + F ++L+ +G + LA+GI+ +E + + V + V+ ++
Sbjct: 54 TTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQAATEEEPQNDNLYLGVVLSAVVIITG 113
Query: 199 GSNFTQNRQFDKFSKVSNNI---QIDVIRNGRRQQISIFEIVVGDVICLKIGDQVPANGL 255
++ Q + K + N+ Q VIRNG + I+ E+VVGD++ +K GD++PA+
Sbjct: 114 CFSYYQEAKSSKIMESFKNMVPQQALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLR 173
Query: 256 FLDGHSLQVDESSMTGESDHVEVN---SSQNPF-----LFSGTKVADGYARMLATSVGMN 307
+ + +VD SS+TGES+ + +++NP F T +G AR + G
Sbjct: 174 IISANGCKVDNSSLTGESEPQTRSPDFTNENPLETRNIAFFSTNCVEGTARGIVVYTGDR 233
Query: 308 TTWGQMMSQISRDNSEQTPLQARL 331
T G++ + S QTP+ A +
Sbjct: 234 TVMGRIATLASGLEGGQTPIAAEI 257
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 108/330 (32%), Positives = 182/330 (55%), Gaps = 26/330 (7%)
Query: 366 KGAAEMILAMCSSYYDASGNIKYLDDNEKERFQQIIQGMASSSLRCIAFAHKQVPEEEHR 425
KGA E IL CS+ +G + L ++ KE FQ + R + F H +PE+++
Sbjct: 513 KGAPERILDRCSTIL-LNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYN 571
Query: 426 N----EKDQKKLIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKA 481
+ D+ +L +GL+ + DP R V AV C+ AG+ + M+TGD+ TAKA
Sbjct: 572 EGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA 631
Query: 482 IATECGILKPGQDT-------------------STGAVLEGEEFRNYTHE--ERMEKVDK 520
IA GI+ G +T + V+ G + ++ + E + +
Sbjct: 632 IAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHT 691
Query: 521 ICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDAPALKETDIGLSMGIQGTEVAKESS 580
V AR+SP KL++V+ +++G +VAVT DG ND+PALK+ DIG++MGI G++V+K+++
Sbjct: 692 EIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQAA 751
Query: 581 DIVILDDNFASVARVLRWGRCVHTNIQKLIQFQLTANVAALLINFVAAVYAGEIPLTAVQ 640
D+++LDDNFAS+ + GR + N++K I + LT+N+ + V + +PL V
Sbjct: 752 DMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGTVT 811
Query: 641 LLWVNLIMDTLGALALATEKPTKELMDKPP 670
+L ++L D + A++LA E+ ++M + P
Sbjct: 812 ILCIDLGTDMVPAISLAYEQAESDIMKRQP 841
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 115/261 (44%), Gaps = 35/261 (13%)
Query: 87 VKMKD----LDKLHEFGGIRGVASALETDFDAGIFGNDQDIARRHEAFS---SNTYKKPP 139
V M D LD+LH G TD G+ AR E + N+ PP
Sbjct: 44 VSMDDHKLSLDELHNKYG---------TDLTRGLTN-----ARAKEILARDGPNSLTPPP 89
Query: 140 SKSLFY-FVVDALKDLTILILLGCAVLSLAFGIKEHGLKEGWYEGGSILVAVFLVIAVSA 198
+ + F +IL+ +G + LA+GI+ E + + V + V+ V+
Sbjct: 90 TTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTG 149
Query: 199 GSNFTQ----NRQFDKFSKVSNNIQIDVIRNGRRQQISIFEIVVGDVICLKIGDQVPANG 254
++ Q +R D F + Q VIR+G + I+ +V GD++ +K GD++PA+
Sbjct: 150 CFSYYQEAKSSRIMDSFKNMVPQ-QALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADL 208
Query: 255 LFLDGHSLQVDESSMTGESDHVEVN---SSQNPF-----LFSGTKVADGYARMLATSVGM 306
+ H +VD SS+TGES+ + SS+NP F T +G AR + G
Sbjct: 209 RIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGD 268
Query: 307 NTTWGQMMSQISRDNSEQTPL 327
T G++ + S +TP+
Sbjct: 269 RTVMGRIATLASGLEVGRTPI 289
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 170/330 (51%), Gaps = 26/330 (7%)
Query: 366 KGAAEMILAMCSSYYDASGNIKYLDDNEKERFQQIIQGMASSSLRCIAFAHKQVPEEEHR 425
KGA E +L CSS G LD+ +E FQ + R + F + E+++
Sbjct: 518 KGAPERVLERCSSIL-IKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYP 576
Query: 426 N----EKDQKKLIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKA 481
+ + L+ GLV + DP R V AV C+ AG+ + M+TGD+ TAKA
Sbjct: 577 PGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKA 636
Query: 482 IATECGILKPGQDT-------------------STGAVLEGEEFRNYTHEERME--KVDK 520
IA GI+ G +T + V+ G + ++ E +E +
Sbjct: 637 IAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHP 696
Query: 521 ICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDAPALKETDIGLSMGIQGTEVAKESS 580
V AR+SP KL++V+ ++ G +VAVT DG ND+PALK+ DIG++MGI G++ AK ++
Sbjct: 697 EMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAA 756
Query: 581 DIVILDDNFASVARVLRWGRCVHTNIQKLIQFQLTANVAALLINFVAAVYAGEIPLTAVQ 640
D+++LDDNFAS+ + GR + N++K I + LT N+ L + + +PL +
Sbjct: 757 DMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCIT 816
Query: 641 LLWVNLIMDTLGALALATEKPTKELMDKPP 670
+L++ L D +++LA EK ++M P
Sbjct: 817 ILFIELCTDIFPSVSLAYEKAESDIMHLRP 846
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 21/208 (10%)
Query: 137 KPPSKSLFY--FVVDALKDLTILILLGCAVLSLAFGIKEHGLKEG-WYEGGSILVAVFLV 193
+PP + Y F L L+ + A+ +AF I+ EG ++ +A+ L+
Sbjct: 91 RPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAIQA---SEGDLTTDDNLYLALALI 147
Query: 194 IAVSAGSNFTQNRQFDKFSKVSN--NI---QIDVIRNGRRQQISIFEIVVGDVICLKIGD 248
V F ++F + +++ N+ Q VIR+G + QI+ ++VVGD++ +K GD
Sbjct: 148 AVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGD 207
Query: 249 QVPANGLFLDGHSLQVDESSMTGESD---------HVEVNSSQNPFLFSGTKVADGYARM 299
+VPA+ L +VD SS+TGES+ H ++N FS T +G A+
Sbjct: 208 RVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFS-TMCLEGTAQG 266
Query: 300 LATSVGMNTTWGQMMSQISRDNSEQTPL 327
L + G T G++ S S +E+TP+
Sbjct: 267 LVVNTGDRTIIGRIASLASGVENEKTPI 294
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 129/288 (44%), Gaps = 30/288 (10%)
Query: 366 KGAAEMILAMCSSYYDASGNIKYLDDNEKERFQQIIQGMASSSLRCIAFAHKQVPEEEHR 425
KGA E IL + + D S + + D ER LR +A A + VPE+
Sbjct: 423 KGAPEQILELAKASNDLSKKVLSIIDKYAER-----------GLRSLAVARQVVPEKTKE 471
Query: 426 NEKDQKKLIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATE 485
+ + + GL+ + DP R + + GVN+KMITGD + K
Sbjct: 472 SPGAPWEFV-------GLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRR 524
Query: 486 CGILKPGQDTSTGAVLEGEE----FRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQ 541
G+ G + + L G + EE +EK D A P K +V+ L++
Sbjct: 525 LGM---GTNMYPSSALLGTHKDANLASIPVEELIEKADG---FAGVFPEHKYEIVKKLQE 578
Query: 542 KGHVVAVTRDGTNDAPALKETDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGRC 601
+ H+V +T DG NDAPALK+ DIG+++ T+ A+ +SDIV+ + + + + R
Sbjct: 579 RKHIVGMTGDGVNDAPALKKADIGIAVA-DATDAARGASDIVLTEPGLSVIISAVLTSRA 637
Query: 602 VHTNIQKLIQFQLTANVAALLINFVAAVYAGEIPLTAVQLLWVNLIMD 649
+ ++ + ++ + ++ F+ E +A +L + ++ D
Sbjct: 638 IFQRMKNYTIYAVSITI-RIVFGFMLIALIWEFDFSAFMVLIIAILND 684
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 222 VIRNGRRQQISIFEIVVGDVICLKIGDQVPANGLFLDGHSLQVDESSMTGESDHVEVNSS 281
V+R+G+ + +V GD++ +K+GD +PA+ L+G L+VD+S++TGES V +
Sbjct: 134 VLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPG 193
Query: 282 QNPFLFSGTKVADGYARMLATSVGMNTTWGQMMSQISRDN 321
Q +FSG+ G + + G++T +G+ + N
Sbjct: 194 QE--VFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTN 231
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 39/217 (17%)
Query: 441 LGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECGILKPGQDTSTGAV 500
+ L+ ++DP + + + + Q +G+ I M+TGD+ TA+A+A GI K
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKK---------- 595
Query: 501 LEGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDAPALK 560
V+A P DK +V LK KG +VA+ DG NDAPAL
Sbjct: 596 ----------------------VVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALA 633
Query: 561 ETDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGRCVHTNIQKLIQFQLTANV-- 618
+ DIG++MG GT+VA ES+ + +L + +A+ R +NI++ + F NV
Sbjct: 634 KADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIYNVLG 692
Query: 619 ----AALLINFVAAVYAGEIPLTAVQLLWVNLIMDTL 651
A +L + + I A+ L V++I++ L
Sbjct: 693 VPLAAGVLYPLTGLLLSPMIAAAAMALSSVSVIINAL 729
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 224 RNGRRQQISIFEIVVGDVICLKIGDQVPANGLFLDGHSLQVDESSMTGESDHVEVNSSQN 283
+G +++S+ + VGD++ ++ G+++P +G +G S VDES +TGE V +S
Sbjct: 232 EDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKEASAK 290
Query: 284 PFLFSGTKVADGYARMLATSVGMNTTWGQMMSQISRDNSEQTPLQ 328
+ T G M A VG +T +++ +S + P+Q
Sbjct: 291 --VIGATINQTGSFVMKALHVGSDTMLARIVQMVSDAQRSRAPIQ 333
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 40/236 (16%)
Query: 422 EEHRNEKDQKKLIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKA 481
E+ E ++ N + G++ + D + K AV++ + G+ + MITGDN +A+A
Sbjct: 430 EKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEA 489
Query: 482 IATECGILKPGQDTSTGAVLEGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQ 541
I+ E + D VL ++ E+V K+ Q
Sbjct: 490 ISRELNL-----DLVIAEVLP---------HQKSEEVKKL-------------------Q 516
Query: 542 KGHVVAVTRDGTNDAPALKETDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGRC 601
VVA DG NDAPAL + D+G+++G G++VA ES DIV++ D+ V ++ R
Sbjct: 517 AKEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRK 575
Query: 602 VHTNIQKLIQFQLTANV------AALLINFVAAVYAGEIPLTAVQLLWVNLIMDTL 651
+ I++ I + L NV A LL V+ E A+ + V+++ ++L
Sbjct: 576 TMSKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSL 631
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 222 VIRNGRRQQISIFEIVVGDVICLKIGDQVPANGLFLDGHSLQVDESSMTGESDHVEVNSS 281
VIR+G+ + + E+ VGD++ ++ G+++P +G+ ++G S VDES ++GE V V S
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEP--VPVLKS 193
Query: 282 QNPFLFSGTKVADGYARMLATSVGMNTTWGQMMSQISRDNSEQTPLQARLNKLTS 336
+ +F T G ++ AT VG T Q++ + + P+Q +K+ +
Sbjct: 194 KGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVA 248
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 109/236 (46%), Gaps = 40/236 (16%)
Query: 422 EEHRNEKDQKKLIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKA 481
E+ E ++ N + G++ + D + K AV++ + G+ + MITGDN +A+A
Sbjct: 508 EKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEA 567
Query: 482 IATECGILKPGQDTSTGAVLEGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQ 541
I+ E + D VL ++ E+V K+ Q
Sbjct: 568 ISRELNL-----DLVIAEVL---------PHQKSEEVKKL-------------------Q 594
Query: 542 KGHVVAVTRDGTNDAPALKETDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGRC 601
VVA DG NDAPAL + D+G+++G G++VA ES DIV++ D+ V ++ R
Sbjct: 595 AKEVVAFVGDGINDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRK 653
Query: 602 VHTNIQKLIQFQLTANV------AALLINFVAAVYAGEIPLTAVQLLWVNLIMDTL 651
+ I++ I + L NV A LL V+ E A+ + V+++ ++L
Sbjct: 654 TMSKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSL 709
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 222 VIRNGRRQQISIFEIVVGDVICLKIGDQVPANGLFLDGHSLQVDESSMTGESDHVEVNSS 281
VIR+G+ + + E+ VGD++ ++ G+++P +G+ ++G S VDES ++GE V V S
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEP--VPVLKS 271
Query: 282 QNPFLFSGTKVADGYARMLATSVGMNTTWGQMMSQISRDNSEQTPLQARLNKLTS 336
+ +F T G ++ AT VG T Q++ + + P+Q +K+ +
Sbjct: 272 KGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLVEDAMGSKPPIQRLADKVVA 326
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 98/189 (51%), Gaps = 6/189 (3%)
Query: 431 KKLIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECGILK 490
+K E + +LG++ DP R K V + + G++IKM+TGD V A+ + + G+
Sbjct: 517 RKRGEGSWEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGL-- 574
Query: 491 PGQDTSTGAVLEGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTR 550
G + L + E + V+ A P K +V+ L+Q+G++VA+T
Sbjct: 575 -GTNIYNAERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTG 633
Query: 551 DGTNDAPALKETDIGLSMGIQG-TEVAKESSDIVILDDNFASVARVLRWGRCVHTNIQKL 609
DG NDAP+LK+ D G++ ++G ++ A+ ++DIV L ++ L+ R + +
Sbjct: 634 DGVNDAPSLKKADTGIA--VEGSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAY 691
Query: 610 IQFQLTANV 618
+ +++ ++
Sbjct: 692 VVYRIALSI 700
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 102/216 (47%), Gaps = 16/216 (7%)
Query: 99 GGIRGVAS-ALETDFDAGIFGNDQDIARRHEAFSSNTYKKPPSKSLFYFVVDALKDLTIL 157
GG R V L+TD G+ +++ +R + N K+ F+ + +
Sbjct: 70 GGGRVVPEDMLQTDTRVGL--TSEEVVQRRRKYGLNQMKEEKENHFLKFLGFFVGPIQ-F 126
Query: 158 ILLGCAVLSLAFGIKEHGLKEGWYEGGSILVAVFLVIAVSAGSNFTQNRQFDKFSKVSNN 217
++ G AVL+ E W + G I + L V F D+ K +
Sbjct: 127 VMEGAAVLAAGL--------EDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKK-TLA 177
Query: 218 IQIDVIRNGRRQQISIFEIVVGDVICLKIGDQVPANG-LFLDGHSLQVDESSMTGESDHV 276
++ V+R+G ++I E+V GD++ ++ G +PA+G + D LQVD+S++TGES +
Sbjct: 178 LKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGES--L 235
Query: 277 EVNSSQNPFLFSGTKVADGYARMLATSVGMNTTWGQ 312
V+ + +F+ + V G A ++ T+ G NT G+
Sbjct: 236 AVDKHKGDQVFASSAVKRGEAFVVITATGDNTFVGR 271
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 85/171 (49%), Gaps = 34/171 (19%)
Query: 437 NLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECGILKPGQDTS 496
N + G++ + D RP ++A+ + G+ M+TGDN F AK +A E G+
Sbjct: 132 NGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL-------- 183
Query: 497 TGAVLEGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDA 556
+ F E+ EKV ++ Q+ +V A+ DG NDA
Sbjct: 184 ------DDYFAEVLPHEKAEKVKEV-------------------QQKYVTAMVGDGVNDA 218
Query: 557 PALKETDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGRCVHTNIQ 607
PAL + D+G+++G GT+VA E++DIV++ ++ VA ++ R ++ ++
Sbjct: 219 PALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 34/173 (19%)
Query: 437 NLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECGILKPGQDTS 496
N + G++ + D RP ++A+ + G+ M+TGDN F AK +A E G+
Sbjct: 132 NGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL-------- 183
Query: 497 TGAVLEGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDA 556
+ F E+ EKV ++ Q+ +V A+ DG NDA
Sbjct: 184 ------DDYFAEVLPHEKAEKVKEV-------------------QQKYVTAMVGDGVNDA 218
Query: 557 PALKETDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGRCVHTNIQKL 609
PAL + D+G+++G GT+VA E++DIV++ ++ VA ++ R ++ L
Sbjct: 219 PALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKFHGL 270
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 34/166 (20%)
Query: 442 GLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECGILKPGQDTSTGAVL 501
G++ + D + K AV++ + G+ + MITGDN +A+AI+ E +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 502 EGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDAPALKE 561
V+A P K V+ L+ K VVA DG NDAPAL +
Sbjct: 203 -------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQ 242
Query: 562 TDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGRCVHTNIQ 607
D+G+++G G++VA ES DIV++ D+ V ++ R + I+
Sbjct: 243 ADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 34/166 (20%)
Query: 442 GLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECGILKPGQDTSTGAVL 501
G++ + D + K AV++ + G+ + MITGDN +A+AI+ E +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 502 EGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDAPALKE 561
V+A P K V+ L+ K VVA DG NDAPAL +
Sbjct: 203 -------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQ 242
Query: 562 TDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGRCVHTNIQ 607
D+G+++G G++VA ES DIV++ D+ V ++ R + I+
Sbjct: 243 ADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 34/168 (20%)
Query: 433 LIEDNLTLLGLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECGILKPG 492
++ N + G++ + D + K AV++ + G+ + ITGDN +A+AI+ E +
Sbjct: 127 IVARNGRVEGIIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRELNL---- 182
Query: 493 QDTSTGAVLEGEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTRDG 552
V+A P K V+ L+ K VVA DG
Sbjct: 183 ----------------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDG 213
Query: 553 TNDAPALKETDIGLSMGIQGTEVAKESSDIVILDDNFASVARVLRWGR 600
NDAPAL + D+G+++G G++VA ES DIV++ D+ V ++ R
Sbjct: 214 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 222 VIRNGRRQQISIFEIVVGDVICLKIGDQVPANGLFLDGHSLQVDESSMTGESDHVEVNSS 281
VIR+G+ + + E+ VGD++ ++ G+++P +G+ ++G S VDES ++GE V V S
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEP--VPVLKS 72
Query: 282 QNPFLFSGTKVADGYARMLATSVGMNTTWGQMMSQI 317
+ +F T G ++ AT VG T Q++ +
Sbjct: 73 KGDEVFGATINNTGVLKIRATRVGGETLLAQIVKLV 108
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 46/150 (30%)
Query: 443 LVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECGILKPGQDTSTGAVLE 502
L +K+ +P AV++ + G+ + ITGDN +A+AI+ E +
Sbjct: 20 LTKLKESAKP----AVQELKRXGIKVGXITGDNWRSAEAISRELNL-------------- 61
Query: 503 GEEFRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDAPALKET 562
V+A P K V+ L+ K VVA DG NDAPAL +
Sbjct: 62 ------------------DLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQA 102
Query: 563 DIGLSMGIQGTEVAKESSDIVILDDNFASV 592
D+G+++G S DIV++ D+ V
Sbjct: 103 DLGIAVG---------SGDIVLIRDDLRDV 123
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 33/152 (21%)
Query: 446 IKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECGILKPGQDTSTGAVLEGEE 505
I D RP +K +E + G+ I +++GD K ++ E I E
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 506 FRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDAPALKETDIG 565
+ N SP DK+ +++ LKQ G+ V + DG NDA AL D+
Sbjct: 179 YSNL------------------SPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVS 220
Query: 566 LSMGIQGTEVAKESSDIVILDDNFASVARVLR 597
++MG G +++K +DI+++ ++ ++ +++
Sbjct: 221 VAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 33/152 (21%)
Query: 446 IKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECGILKPGQDTSTGAVLEGEE 505
I D RP +K +E + G+ I +++GD K ++ E I E
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 506 FRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDAPALKETDIG 565
+ N SP DK+ +++ LKQ G+ V + DG NDA AL D+
Sbjct: 179 YSNL------------------SPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVS 220
Query: 566 LSMGIQGTEVAKESSDIVILDDNFASVARVLR 597
++MG G +++K +DI+++ ++ ++ +++
Sbjct: 221 VAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 33/152 (21%)
Query: 446 IKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECGILKPGQDTSTGAVLEGEE 505
I D RP +K +E + G+ I +++GD K ++ E I E
Sbjct: 133 ISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI--------------QEY 178
Query: 506 FRNYTHEERMEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTRDGTNDAPALKETDIG 565
+ N SP DK+ +++ LKQ G+ V + DG NDA AL D+
Sbjct: 179 YSNL------------------SPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVS 220
Query: 566 LSMGIQGTEVAKESSDIVILDDNFASVARVLR 597
++MG G +++K +DI+++ ++ ++ +++
Sbjct: 221 VAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 366 KGAAEMILAMCSSYYDASGNIKYLDDNEKERFQQIIQGMASSSLRCIAFAHKQVPEEEHR 425
KGA E IL CSS G + LD+ K+ FQ + R + F H +P+E+
Sbjct: 126 KGAPERILDRCSSIL-LHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLLLPDEQFP 184
Query: 426 N----EKDQKKLIEDNLTLLGLVGIKDP 449
+ D+ DNL +GL+ + DP
Sbjct: 185 EGFQFDTDEVNFPVDNLCFVGLISMIDP 212
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 228 RQQISIFEIVVGDVICLKIGDQVPANGLFLDGHSLQVDESSMTGESDHVEVNSSQNPFLF 287
+Q+ + + GD+I + G + P +G ++GHS+ VDES +TGE+ + V +
Sbjct: 34 EEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEA--MPVAKKPGSTVI 90
Query: 288 SGTKVADGYARMLATSVGMNTTWGQMM 314
+G+ +G + AT VG +TT Q++
Sbjct: 91 AGSINQNGSLLICATHVGADTTLSQIV 117
>pdb|1LTL|A Chain A, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|B Chain B, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|C Chain C, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|D Chain D, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|E Chain E, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
pdb|1LTL|F Chain F, The Dodecamer Structure Of Mcm From Archaeal M.
Thermoautotrophicum
Length = 279
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 442 GLVGIKDPCRPGVKKAVEDCQYAGVNIKMITGDNVFTAKAIATECG 487
G+V D RP + KAV +C+ + + N+ T ++ +ECG
Sbjct: 118 GIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECG 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,538,621
Number of Sequences: 62578
Number of extensions: 891950
Number of successful extensions: 2129
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2042
Number of HSP's gapped (non-prelim): 51
length of query: 819
length of database: 14,973,337
effective HSP length: 107
effective length of query: 712
effective length of database: 8,277,491
effective search space: 5893573592
effective search space used: 5893573592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)