Query 003454
Match_columns 819
No_of_seqs 230 out of 950
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 23:43:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2189 Vacuolar H+-ATPase V0 100.0 5E-207 1E-211 1722.0 73.2 795 10-817 1-826 (829)
2 PF01496 V_ATPase_I: V-type AT 100.0 1E-143 3E-148 1300.3 12.7 749 35-812 1-759 (759)
3 PRK05771 V-type ATP synthase s 100.0 3E-97 6E-102 882.3 64.7 636 15-816 2-645 (646)
4 COG1269 NtpI Archaeal/vacuolar 100.0 1.1E-90 2.5E-95 819.2 63.3 499 189-818 157-658 (660)
5 PF14257 DUF4349: Domain of un 90.2 2.2 4.8E-05 45.7 10.8 87 21-119 97-183 (262)
6 PRK05771 V-type ATP synthase s 84.3 23 0.00051 43.1 16.2 96 96-224 213-309 (646)
7 PF05767 Pox_A14: Poxvirus vir 64.4 35 0.00075 30.3 7.3 52 548-599 13-64 (92)
8 PF10805 DUF2730: Protein of u 62.9 40 0.00087 31.0 8.0 60 65-134 42-101 (106)
9 PF05377 FlaC_arch: Flagella a 60.5 26 0.00056 28.4 5.3 33 100-132 2-34 (55)
10 COG1269 NtpI Archaeal/vacuolar 54.9 74 0.0016 39.0 10.7 39 14-52 1-39 (660)
11 PF14182 YgaB: YgaB-like prote 50.7 1.1E+02 0.0023 26.7 7.7 19 61-79 20-38 (79)
12 PF09902 DUF2129: Uncharacteri 50.1 14 0.0003 31.5 2.5 39 13-51 24-62 (71)
13 COG5185 HEC1 Protein involved 50.1 4.7E+02 0.01 30.4 14.8 31 99-129 331-361 (622)
14 PRK02302 hypothetical protein; 49.8 18 0.0004 32.1 3.3 52 14-66 31-82 (89)
15 PRK10692 hypothetical protein; 48.1 66 0.0014 28.4 6.2 49 548-606 12-60 (92)
16 PF01496 V_ATPase_I: V-type AT 45.4 2.3E+02 0.0049 35.4 13.2 28 189-216 289-316 (759)
17 PF10158 LOH1CR12: Tumour supp 44.6 2.1E+02 0.0045 27.5 9.8 49 99-147 57-105 (131)
18 KOG0995 Centromere-associated 44.5 1.3E+02 0.0028 35.6 9.8 13 203-215 381-393 (581)
19 PF03223 V-ATPase_C: V-ATPase 44.4 5.2E+02 0.011 29.3 26.1 158 189-365 179-339 (371)
20 PRK10884 SH3 domain-containing 44.4 1.3E+02 0.0029 31.1 9.1 85 42-134 66-154 (206)
21 PF10762 DUF2583: Protein of u 42.3 80 0.0017 27.7 5.8 49 548-606 12-60 (89)
22 PF06160 EzrA: Septation ring 40.6 2.6E+02 0.0057 33.5 12.2 53 65-124 75-127 (560)
23 PF05529 Bap31: B-cell recepto 40.6 98 0.0021 31.5 7.5 32 100-131 156-187 (192)
24 PF05377 FlaC_arch: Flagella a 39.3 1.3E+02 0.0027 24.5 6.2 35 100-134 9-43 (55)
25 PF00261 Tropomyosin: Tropomyo 38.4 94 0.002 32.8 7.2 28 100-127 136-163 (237)
26 COG1382 GimC Prefoldin, chaper 37.5 2.2E+02 0.0048 26.9 8.5 38 96-133 68-105 (119)
27 KOG2189 Vacuolar H+-ATPase V0 37.2 4.5E+02 0.0097 32.6 13.0 89 277-366 91-199 (829)
28 PF06570 DUF1129: Protein of u 36.1 5E+02 0.011 26.7 13.5 18 412-429 84-101 (206)
29 PF04102 SlyX: SlyX; InterPro 33.8 1.5E+02 0.0032 25.0 6.3 14 66-79 5-18 (69)
30 KOG0964 Structural maintenance 33.3 1.1E+03 0.025 30.0 16.6 39 280-318 680-718 (1200)
31 PRK02886 hypothetical protein; 33.2 49 0.0011 29.4 3.3 38 14-51 29-66 (87)
32 PRK00295 hypothetical protein; 32.8 2.4E+02 0.0051 23.8 7.3 14 66-79 6-19 (68)
33 COG4477 EzrA Negative regulato 32.5 1.6E+02 0.0036 34.5 8.2 67 51-132 343-409 (570)
34 PRK02793 phi X174 lysis protei 32.2 1.9E+02 0.0042 24.6 6.7 14 66-79 9-22 (72)
35 COG4942 Membrane-bound metallo 31.7 1.9E+02 0.0041 33.2 8.4 66 56-133 43-108 (420)
36 PF04977 DivIC: Septum formati 31.6 1.2E+02 0.0026 25.7 5.6 44 99-142 18-62 (80)
37 PF07106 TBPIP: Tat binding pr 31.0 3E+02 0.0066 27.2 9.1 91 26-126 30-137 (169)
38 COG4471 Uncharacterized protei 30.8 62 0.0013 28.7 3.5 53 14-67 30-82 (90)
39 PF10481 CENP-F_N: Cenp-F N-te 30.8 1.9E+02 0.0041 31.1 7.7 72 63-146 16-87 (307)
40 PRK04325 hypothetical protein; 30.4 2.5E+02 0.0054 24.1 7.1 14 66-79 10-23 (74)
41 PF12725 DUF3810: Protein of u 30.3 92 0.002 34.5 5.7 58 427-487 23-81 (318)
42 COG2433 Uncharacterized conser 30.2 1.2E+02 0.0025 36.3 6.6 36 97-132 473-508 (652)
43 COG3323 Uncharacterized protei 29.9 43 0.00093 30.9 2.5 34 17-50 3-36 (109)
44 PF10392 COG5: Golgi transport 29.9 4.3E+02 0.0092 25.1 9.6 41 104-144 85-125 (132)
45 TIGR03185 DNA_S_dndD DNA sulfu 29.1 2.8E+02 0.006 34.0 10.1 64 59-132 392-455 (650)
46 PF05667 DUF812: Protein of un 28.7 1.1E+03 0.024 28.5 17.1 26 278-303 447-472 (594)
47 PF07666 MpPF26: M penetrans p 28.5 2.3E+02 0.005 27.2 7.2 80 402-485 40-120 (130)
48 KOG0804 Cytoplasmic Zn-finger 28.4 2.1E+02 0.0045 33.0 7.9 77 57-140 333-410 (493)
49 PF15372 DUF4600: Domain of un 28.3 4E+02 0.0086 25.6 8.6 69 56-124 6-77 (129)
50 KOG4603 TBP-1 interacting prot 27.2 1.4E+02 0.0031 29.8 5.6 53 69-131 97-149 (201)
51 PRK00736 hypothetical protein; 26.9 3.3E+02 0.0071 23.0 7.2 13 66-78 6-18 (68)
52 PHA02898 virion envelope prote 26.7 2.8E+02 0.006 24.7 6.7 44 548-591 13-56 (92)
53 TIGR02338 gimC_beta prefoldin, 26.6 1.7E+02 0.0037 26.9 6.0 33 100-132 69-101 (110)
54 COG4942 Membrane-bound metallo 26.4 9.4E+02 0.02 27.8 12.7 64 65-133 38-101 (420)
55 PF05529 Bap31: B-cell recepto 25.8 1.2E+02 0.0026 30.8 5.2 32 97-128 160-191 (192)
56 PRK15028 cytochrome bd-II oxid 24.5 5.1E+02 0.011 29.5 10.3 66 419-489 73-142 (378)
57 PRK10263 DNA translocase FtsK; 24.4 1.2E+03 0.025 31.2 14.3 155 544-798 22-190 (1355)
58 PF08181 DegQ: DegQ (SacQ) fam 24.3 2E+02 0.0043 21.7 4.6 33 99-131 5-37 (46)
59 PF01102 Glycophorin_A: Glycop 23.8 66 0.0014 30.5 2.6 13 421-433 67-79 (122)
60 TIGR02209 ftsL_broad cell divi 23.8 2.2E+02 0.0047 24.6 5.8 44 100-143 26-69 (85)
61 PF04949 Transcrip_act: Transc 23.7 6.8E+02 0.015 24.6 9.3 65 59-131 53-117 (159)
62 PF10168 Nup88: Nuclear pore c 23.3 1.5E+03 0.033 28.1 17.4 16 249-264 610-625 (717)
63 PRK13729 conjugal transfer pil 23.1 1.9E+02 0.0042 33.7 6.7 56 57-127 68-126 (475)
64 PF06005 DUF904: Protein of un 23.0 3.9E+02 0.0084 22.9 6.9 33 100-132 6-38 (72)
65 KOG4403 Cell surface glycoprot 22.9 1.2E+03 0.026 26.9 13.5 73 67-146 254-326 (575)
66 PRK10869 recombination and rep 22.7 3.4E+02 0.0074 32.5 9.1 44 64-119 295-338 (553)
67 PF11023 DUF2614: Protein of u 22.5 1.8E+02 0.0039 27.1 5.1 18 723-740 8-25 (114)
68 PF00170 bZIP_1: bZIP transcri 22.3 3.2E+02 0.0068 22.4 6.2 34 99-132 27-60 (64)
69 PF10168 Nup88: Nuclear pore c 22.1 4.5E+02 0.0098 32.6 10.1 39 107-145 581-620 (717)
70 PF10046 BLOC1_2: Biogenesis o 21.9 2.4E+02 0.0051 25.6 5.8 66 57-131 34-99 (99)
71 PF01920 Prefoldin_2: Prefoldi 21.9 2.1E+02 0.0045 25.6 5.6 34 99-132 63-96 (106)
72 KOG1962 B-cell receptor-associ 21.3 3.7E+02 0.0081 28.1 7.7 19 34-52 62-80 (216)
73 PF08946 Osmo_CC: Osmosensory 21.2 1.8E+02 0.004 22.5 4.0 21 100-120 14-34 (46)
74 PF08261 Carcinustatin: Carcin 20.8 50 0.0011 16.1 0.6 7 521-527 2-8 (8)
75 PF06103 DUF948: Bacterial pro 20.5 5.8E+02 0.013 22.3 8.8 31 280-310 35-65 (90)
76 KOG2391 Vacuolar sorting prote 20.5 5E+02 0.011 29.0 8.7 32 99-130 247-278 (365)
77 PF06120 Phage_HK97_TLTM: Tail 20.2 3.4E+02 0.0074 29.9 7.6 51 30-83 56-106 (301)
78 PF03233 Cauli_AT: Aphid trans 20.2 3.4E+02 0.0074 27.0 6.8 50 64-122 110-159 (163)
79 PF06156 DUF972: Protein of un 20.1 3.2E+02 0.007 25.3 6.3 35 105-139 8-42 (107)
80 TIGR02449 conserved hypothetic 20.0 4.9E+02 0.011 21.9 6.7 37 100-136 2-38 (65)
No 1
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=100.00 E-value=5e-207 Score=1722.03 Aligned_cols=795 Identities=51% Similarity=0.877 Sum_probs=709.3
Q ss_pred CCccccccccceEEEEcccccHHHHHHHhcccCceeeeecCCCCCchhhhhhHhHhhhHHHHHHHHHHHHHHHhcCCCCC
Q 003454 10 PMDLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSS 89 (819)
Q Consensus 10 ~mslfRSe~M~~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln~~~~~fqR~f~~~i~RceE~erkL~fl~~~i~k~~i~~~ 89 (819)
++|+||||+|++|||++|+|+|++||++|||+|+|||+|||+++++|||+|++|||||||||||+||+++|+.|++++..
T Consensus 1 ~~s~fRSE~M~L~Ql~l~~eaAy~~vaeLGelGlvqFrDLN~~v~afQR~fv~evrRcdemeRklrfl~~ei~k~~i~~~ 80 (829)
T KOG2189|consen 1 MGSLFRSEEMCLVQLFLQSEAAYQCVAELGELGLVQFRDLNPDVSAFQRKFVNEVRRCDEMERKLRFLESEIKKAGIPLP 80 (829)
T ss_pred CccccccccceeeEEEecHHHHHHHHHHhhccCeeEeeeCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999988754
Q ss_pred ---CCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhhhhhhhhhccc
Q 003454 90 ---VHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSM 166 (819)
Q Consensus 90 ---~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 166 (819)
..+++|.+++++++|++++++|+|++|+++|.++|+++++++.|+++||+++++|++.......+.+..
T Consensus 81 ~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~~Ff~~~~~~~~~~~~~-------- 152 (829)
T KOG2189|consen 81 DLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTDEFFSTSVQESFEDDET-------- 152 (829)
T ss_pred CccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhcchhh--------
Confidence 456678899999999999999999999999999999999999999999999999998743211100000
Q ss_pred CcccccccchhhhhccCCCCCCcceEEEeEEecccHHHHHHHHHHhhCCcEEeeecCCCccccCcccccccceEEEEEEE
Q 003454 167 NDYADTASLLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFF 246 (819)
Q Consensus 167 ~~~~~~~ll~~~e~~~~~~~~~~~~~i~G~I~~~~~~~f~~~l~R~~rgn~~~~~~~i~~~~~~~~~~~~~~k~vfvv~~ 246 (819)
......++.. .+ .++....+++|++|+|++++...|||+|||+||||+|+++.++|+++.||.+|+..+|+||+|++
T Consensus 153 ~~~~~~~~~~-~~--~~~~~~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn~f~r~~~ie~~l~dp~Tge~~~K~vFivF~ 229 (829)
T KOG2189|consen 153 ADLGEGPLES-AE--KGPFDGLKLGFVAGVINREKVFAFERMLWRACRGNLFIRQSDIEEPLEDPKTGEPVEKNVFIVFF 229 (829)
T ss_pred hhhcccccch-hc--cCCCCcccceeEEeeechhHHHHHHHHHHHHhccceEEEeecccccccCCccCCcceeEEEEEEe
Confidence 0000111111 11 11223347999999999999999999999999999999999999999999999999999999999
Q ss_pred eChhhHHHHHHHHhhcCceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003454 247 SGEQARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVY 326 (819)
Q Consensus 247 ~~~~~~~kv~kI~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~iy 326 (819)
+|++++.||+|||++|+++.||||+++.++++++.+++.||+|++.++.++++++.++|..+++++..|...++|+|+||
T Consensus 230 ~Geql~~kIkKIcd~f~a~~yp~p~~~~er~~~~~~v~~ri~DL~~Vl~~t~~~r~~vL~~~~~~l~~W~~~v~K~KaIy 309 (829)
T KOG2189|consen 230 QGEQLKQKIKKICDGFGATLYPCPESPEERKEMLLEVNTRISDLQTVLDQTEDHRSRVLQAAAKNLPSWLIKVRKEKAIY 309 (829)
T ss_pred ecHHHHHHHHHHHhccCcEeecCCCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccCceEEEEEeeecccHHHHHHHHHhhhccCCCceeeEeeecCCCCCCCccccccchhhHHHHHHHhhcCC
Q 003454 327 DTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVA 406 (819)
Q Consensus 327 ~~ln~~~~~~t~~~~~~~gWvP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~pPt~l~nn~~~~pFe~iv~~Yg~P 406 (819)
|+||+|++|+|++|+++|||||..|++.++++|++.+..+|++|+.+++.+++++.||||+||||||++||.|||+||++
T Consensus 310 htLN~fn~Dvt~KCLIaE~W~P~~dl~~vq~aL~~~~~~sgS~v~~i~nv~~T~e~PPTy~RTNKFT~~FQ~IvDaYGVa 389 (829)
T KOG2189|consen 310 HTLNMFNFDVTQKCLIAEGWCPVADLPDLQRALERGSEESGSQVPSILNVMETNEMPPTYFRTNKFTAGFQNIVDAYGVA 389 (829)
T ss_pred HHHhccCccccCceEEEEeecchhhHHHHHHHHHHhhhhcCCcchhhHhheecCCCCCcchhcchhhHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhccccch-hhHHHhhhhHHHHHHHHhHHHHHHHHHh
Q 003454 407 RYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKL-GSFMEMLFGGRYVLLLMSLFSIYCGLIY 485 (819)
Q Consensus 407 ~Y~EidPt~~~~itFp~~FG~MfGD~G~Glll~l~~~~l~~~~~~~~~~~~-~~~~~~~~~~ryil~~~gi~si~~G~ly 485 (819)
+|+|+||+|+++|||||+||+||||+|||++|+++|+|+++++||+..++. +|+++|+|+||||+++||+||||+|+||
T Consensus 390 ~YrEvNPa~yTiITFPFLFAVMFGD~GHG~imlL~al~~Vl~Ekkl~~~k~~~EI~~mfF~GRYIIlLMGlFSiYTGliY 469 (829)
T KOG2189|consen 390 SYREVNPAPYTIITFPFLFAVMFGDLGHGLIMLLAALWMVLNEKKLASQKIGDEIFNMFFGGRYIILLMGLFSIYTGLIY 469 (829)
T ss_pred cccccCCCceeEeehHHHHHHHhcccchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999987774 6999999999999999999999999999
Q ss_pred cccccCcccccCCccccccCCCC----CCccc---ccccccCCCCCCcCCCCCCCCCCCccccchhHHHHHHHHHHHHHH
Q 003454 486 NEFFSVPYHIFGGSAYRCRDTTC----SDAYT---AGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMN 558 (819)
Q Consensus 486 g~fFg~~~~~fg~s~~~~~~~~~----~~~~~---~~~~~~~~~y~fgidp~w~~~~~~l~f~ns~~m~~SiiiGv~~m~ 558 (819)
||||++++++|| |+|.++++.. ++... .+.....+|||||+||+|+.+.|+++|.||+|||+|||+|++||+
T Consensus 470 ND~FSks~niFg-S~W~~~~~~~~~~~~e~~~~p~~~~~~~~gpYPfGvDPiW~~a~N~L~FLNS~KMKmSIIlGi~hM~ 548 (829)
T KOG2189|consen 470 NDFFSKSMNIFG-SSWSNPYNVTAVLCSEALLTPEIGGAKFGGPYPFGVDPIWHLADNKLSFLNSMKMKMSIILGIIHMT 548 (829)
T ss_pred hhhccccccccc-CcccCccccchhccccccccCCCCcccccCCCCCcCChhhhcccccchhhhhhHHHHHHHHHHHHHH
Confidence 999999999999 9998775432 11111 122223569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHh-----cC-CCchHHHHHHHHhcCCCCCCCccccc
Q 003454 559 LGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWC-----TG-SQADLYHVMIYMFLSPTDDLGENELF 632 (819)
Q Consensus 559 ~G~~l~~~n~~~~~~~~~~~~~~ip~~~fl~~~fgyl~~lii~kw~-----~~-~~p~l~~~~i~m~l~~~~~~~~~~l~ 632 (819)
+|+++++.|++++|++.|++++|+||++||.|+|||||++|+|||+ ++ +|||+++++||||++|+...+ ..+|
T Consensus 549 fGv~lS~~N~~~Fk~~~~I~~~FIPq~iFl~~iFgYL~~~IiyKW~~~~~~~~~~aPslLi~lInMFl~~~~~~~-~~ly 627 (829)
T KOG2189|consen 549 FGVILSVFNHIYFKSKLDIILVFIPQLIFLLSLFGYLVFLIIYKWLVFWAKTSNCAPSLLIMLINMFLFPGTDAG-FQLY 627 (829)
T ss_pred HHHHHHHHHHHHhccchheeeeccHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCchHHHHHHHHHhCCCCCCc-cccC
Confidence 9999999999999999999999999999999999999999999999 44 599999999999999986432 2899
Q ss_pred cCchHHHHHHHHHHHHhhhhhccchhhHHhhhhhcc----ccCccccccCCCccccC----CCCC---ccccCCCCCchh
Q 003454 633 WGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTER----FQGRTYGILGTSEMDLE----VEPD---SARQHHEDFNFS 701 (819)
Q Consensus 633 ~g~~~~~~~ll~~~~~~v~~ml~~~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~ 701 (819)
|||..+|.+++++|++||||||++||++++++|+++ ..+..++.....++... +..+ .++++++++++|
T Consensus 628 p~Q~~vQ~~ll~~Al~cVPwmLl~KPl~l~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~fs 707 (829)
T KOG2189|consen 628 PGQKQVQLILLVLALVCVPWMLLGKPLYLRRRHKNRLRERHQGQSAGRLDSTDGSVHGPTSDAEDGGGVGDGEEEEFEFS 707 (829)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcchHHHHHHhhhccccccccchhcccccccccccCCccccccCCCCCCCCcCccchh
Confidence 999999999999999999999999999999888764 22222332211111110 0111 112455678999
Q ss_pred HHHHHHHHHHhHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCc---hHHHHHHHHHHHHHHHHHHHHHH
Q 003454 702 EIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDN---LVIRLVGLAVFAFATAFILLMME 778 (819)
Q Consensus 702 e~~i~q~i~tiE~~lg~isnt~SYlRL~AL~LAh~~La~vf~~~~~~~~~~~~~---~~~~~~g~~i~~~~~~~vll~me 778 (819)
|+||||+||||||||||+||||||||||||||||||||+|+|+|++.++++.++ .+++++-+.+|+++|++|+++||
T Consensus 708 eI~iHQaIHTIEf~LgcVShTASYLRLWALSLAHAQLSeVLW~Mvl~~g~~~~~~~g~i~~~~if~~f~~lTv~ILv~ME 787 (829)
T KOG2189|consen 708 EIFIHQAIHTIEFVLGCVSHTASYLRLWALSLAHAQLSEVLWTMVLRIGLGLGGYVGVIGLVALFGVFAVLTVAILVLME 787 (829)
T ss_pred hHHhhhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998876432 34455566799999999999999
Q ss_pred HhHHHHhhhhhhhhhhccCccccCCcccccccccccccc
Q 003454 779 TLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDE 817 (819)
Q Consensus 779 ~L~aflH~LRL~~vEFf~KFY~G~G~~F~Pf~~~~~~~~ 817 (819)
|||||+||||||||||+||||+|.||+|.||+|+.++++
T Consensus 788 GLSAfLHaLRLHWVEFqsKFy~G~Gy~F~PFsF~~~~~~ 826 (829)
T KOG2189|consen 788 GLSAFLHALRLHWVEFQSKFYEGTGYKFEPFSFKLILDE 826 (829)
T ss_pred hHHHHHHHHHHHHHHHhhhhcCCCCcccccceeehhhhh
Confidence 999999999999999999999999999999999988763
No 2
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=100.00 E-value=1.5e-143 Score=1300.29 Aligned_cols=749 Identities=44% Similarity=0.712 Sum_probs=154.7
Q ss_pred HHHhcccCceeeeecCCCCCchhhhhhHhHhhhHHHHHHHHHHHHHHHhcCCCCC---CCCCCCCCCcHHHHHHHHHHHH
Q 003454 35 VSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSS---VHPVSGPDLDLEELEIQLAEHE 111 (819)
Q Consensus 35 v~~Lgelg~Vqf~Dln~~~~~fqR~f~~~i~RceE~erkL~fl~~~i~k~~i~~~---~~~~~~~~~~l~elE~~l~~~e 111 (819)
|++||++|+|||+|+|++++.|||+|+++++||||++|+|+++++++.+.+.... ..+..+...+++++|+++++++
T Consensus 1 V~eLgelG~VqF~Dln~~~~~fqr~f~~ev~r~de~erkL~~le~~I~k~~~~~~~~~~~~~~~~~~~i~~le~~l~~le 80 (759)
T PF01496_consen 1 VNELGELGLVQFRDLNEDVSAFQRKFVNEVRRCDEMERKLRFLEEEIKKLKIPLPEKNDKPDAPKPKEIDELEEELEELE 80 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CchhhcCCcEEEEECccchhHHHHHhhhccccHHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999998876543 1233445568999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhhhhhhhhhcccCcccccccchhhhhccCCCCCCcce
Q 003454 112 HELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLEQDIRAGPSNQSGLR 191 (819)
Q Consensus 112 ~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~e~~~~~~~~~~~~ 191 (819)
+++++++++.++|.++++++.|.+++|++..+.+++.. .+.++.|.+- +.+...+. .....+++
T Consensus 81 ~~l~e~~~~~e~L~~~~~~L~E~~~~L~~~~~~l~~~~------~~~l~~~~~l---~~~~~~l~-------~~~~~~~~ 144 (759)
T PF01496_consen 81 EELRELNENLEKLEEELNELEEEKNVLEEEIEFLEELK------LEELEPWKNL---DIDLEELE-------SSKFLNLG 144 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhhhhhhhhc---ccchhhhc-------cccceeee
Confidence 99999999999999999999999999999888776531 1122333210 01111111 01224567
Q ss_pred EEEeEEecccHHHHHHHHHHhhCCcEEeeecCCCccccCcccccccceEEEEEEEeChhhHHHHHHHHhhcCceEeeCCC
Q 003454 192 FISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYPVSE 271 (819)
Q Consensus 192 ~i~G~I~~~~~~~f~~~l~R~~rgn~~~~~~~i~~~~~~~~~~~~~~k~vfvv~~~~~~~~~kv~kI~~~~~~~~~~~p~ 271 (819)
+++|+||+++.++|++.+||+++||+|++..++++...|+. +.+++++|+|++++++.++++++||+++||+++++|+
T Consensus 145 f~~G~I~~~~~~~f~~~l~r~~~~N~fi~~~~Ie~~~~d~~--e~~~k~v~vv~~~~~~~~~kv~~il~~~~f~~~~~p~ 222 (759)
T PF01496_consen 145 FIAGVIPREKIESFERILWRATRGNIFIRFSEIEEILEDPK--EEVEKEVFVVFFSGKELEEKVKKILRSFGFERYDLPE 222 (759)
T ss_dssp -------HHHHHHHHHHHHHHHTT-----S------EEEE---EE-SSSEEEEEEEEGGGHHHHHHHHHTTT--B----G
T ss_pred EEEEEEehhhHHHHHHHHHHhccCCeEEEEEeeeccccccc--ceeeeeeEEEEEEchhhHHHHHHHhhccCceecCCCC
Confidence 89999999999999999999999999999999887766655 5567889999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCceEEEEEeeeccc
Q 003454 272 DLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCPIFA 351 (819)
Q Consensus 272 ~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~iy~~ln~~~~~~t~~~~~~~gWvP~~~ 351 (819)
.++++.+.++++++++++++++++++++++++.++++.+.+..|+.++++++++|+++|.+..+.+ ++++++||||+++
T Consensus 223 ~~~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~GWvP~~~ 301 (759)
T PF01496_consen 223 DEGTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEALNKFASTET-NVFILEGWVPEKD 301 (759)
T ss_dssp GGGG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----SEEEEEEE-TTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cEEEEEEeccHHH
Confidence 888999999999999999999999999999999999999999999999999999999997764443 8999999999999
Q ss_pred HHHHHHHHHhhhccCCCceeeEeeecCCCCCCCccccccchhhHHHHHHHhhcCCCCCccCCchhHHHHHHHHHHHHhcc
Q 003454 352 KAQIQEVLQRATFDSNSQVGTIFHVMDSMESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLFAVMFGD 431 (819)
Q Consensus 352 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~pPt~l~nn~~~~pFe~iv~~Yg~P~Y~EidPt~~~~itFp~~FG~MfGD 431 (819)
+++++++|++.+.+....+....++++++++|||++|||+|++|||.+|+|||+|+|+|+||||++++|||+||||||||
T Consensus 302 ~~~l~~~l~~~~~~~~~~v~~~~~~~~~~~~pPt~lknn~~~~pFe~iv~~Yg~P~Y~EiDPt~~~ai~fp~fFG~MfGD 381 (759)
T PF01496_consen 302 VEELKKALEEATDGSEYSVPSIEEEPEEEEEPPTKLKNNKFTKPFEMIVDMYGLPKYREIDPTPFMAITFPFFFGMMFGD 381 (759)
T ss_dssp HHHHHHT--SS-EEEE----------------------------------------------------------------
T ss_pred HHHHHHHHHhhccccccccccccccccccCCCCeeecCchhhhHHHHHHHhcCCCCCCccccchHHHHHHHHHHHHHHhh
Confidence 99999999987654322122233445567889999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhHHHHHHHHhHHHHHHHHHhcccccCcccccCCccccccCCCCCCc
Q 003454 432 WGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRDTTCSDA 511 (819)
Q Consensus 432 ~G~Glll~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ryil~~~gi~si~~G~lyg~fFg~~~~~fg~s~~~~~~~~~~~~ 511 (819)
+|||++|+++|++++++.++.++++ ++++++++++||++++||++|||||+|||||||.++++|| +.|..........
T Consensus 382 ~GyGlll~l~~l~l~~~~~~~~~~~-~e~~~~~~~~~~il~~~gi~si~~G~iyg~~FG~~~~~f~-~~~~~~~~~~~~~ 459 (759)
T PF01496_consen 382 AGYGLLLLLFGLLLIKKFKKLKKMK-NEIFNMLFKLRYILLLMGISSIIFGFIYGSFFGDSLNIFG-SGWNWPMNIKEGE 459 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhccccchhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhcCcchhcC-ccccccccccCCc
Confidence 9999999999999998877766555 8999999999999999999999999999999999999998 7776542211100
Q ss_pred ccccccccCCCCCCcCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHHHHHHHH
Q 003454 512 YTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSL 591 (819)
Q Consensus 512 ~~~~~~~~~~~y~fgidp~w~~~~~~l~f~ns~~m~~SiiiGv~~m~~G~~l~~~n~~~~~~~~~~~~~~ip~~~fl~~~ 591 (819)
.....+..++||||+||.|+.+.|++.|.||++|++|+++|++||++|++++++|++++|++.|++.+++|+++|+.++
T Consensus 460 -~~~~~~~~~~yp~g~dp~~~~~~n~l~f~ns~~m~~SiiiGvi~m~~G~~l~~~n~i~~~~~~d~~~~~~~~~~~~~~l 538 (759)
T PF01496_consen 460 -SITLAPSVGPYPFGIDPIWNPATNELLFLNSFKMKLSIIIGVIHMLFGLILKIINNIRFKDKIDIFFAFIPQLLFLISL 538 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -eeeccCccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhhhcchHHHHHHHH
Confidence 0001112348999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC------CCchHHHHHHHHhcCCCCCCCccccccCchHHHHHHHHHHHHhhhhhccchhhHHhhhh
Q 003454 592 FGYLSLLIIIKWCTG------SQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLH 665 (819)
Q Consensus 592 fgyl~~lii~kw~~~------~~p~l~~~~i~m~l~~~~~~~~~~l~~g~~~~~~~ll~~~~~~v~~ml~~~p~~~~~~~ 665 (819)
||||+++|++||++. ++|++++++|+|++.|+.. .++|+||..+|.++++++++||||||++||+++++++
T Consensus 539 ~Gyl~~li~~kw~~~~~~~~~~~p~il~~li~m~l~~~~~---~~~~~~q~~~~~~l~~~~~~~vp~~l~~~p~~~~~~~ 615 (759)
T PF01496_consen 539 FGYLVFLIIYKWLTPWFADSICAPSILIGLINMFLFPGTV---QPLYPGQSTVQVILLLIALISVPWMLLPKPLILKRKH 615 (759)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhhhhhcccCCchHHHHHHHhhcCCCCh---hhhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999974 5799999999999999754 7899999999999999999999999999999988776
Q ss_pred hccccCccccccCCCccccCCCCCccccCCCCCchhHHHHHHHHHHhHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHH
Q 003454 666 TERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEK 745 (819)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~q~i~tiE~~lg~isnt~SYlRL~AL~LAh~~La~vf~~~ 745 (819)
++... ..++.... ..+... ...+++++++++||++|||+||+||+++|++|||+||+|||||||||++||.|||.|
T Consensus 616 ~~~~~--~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~sy~Rl~a~~la~~~l~~~~~~~ 691 (759)
T PF01496_consen 616 KKKQE--KEDLLEEE-EEESES-QEDEEEHEEFDFGEIFIHQGIETIEFVLGCISNTLSYLRLWALSLAHAQLSEVFNEM 691 (759)
T ss_dssp -------------------------------------------------SSSTTTTCHHHHHCHHHHCHHHHCCS-----
T ss_pred hhhcc--cccccccc-cccccc-ccccccccchhHHHHHHHHHHHHHHHHHhhhcchHhHHHHHHHhhhHHHHHHHHHHH
Confidence 65321 11111111 111111 122234677899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCc-hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhccCccccCCccccccccc
Q 003454 746 VLLLAWGYDN-LVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFA 812 (819)
Q Consensus 746 ~~~~~~~~~~-~~~~~~g~~i~~~~~~~vll~me~L~aflH~LRL~~vEFf~KFY~G~G~~F~Pf~~~ 812 (819)
+.+.+.+.++ +++.+++++++++++++++++||+|+||||+|||||||||||||+|+||+|+||+++
T Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lRL~~~E~~~kfy~g~g~~f~p~~~~ 759 (759)
T PF01496_consen 692 ALMLGLSSGGVPIAGIIGFIIIAILGHAILIGMEGLSAFLHALRLHWVEFFSKFYEGGGRPFEPFSFK 759 (759)
T ss_dssp --------------------------------------------------------------------
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCeecCCCCCC
Confidence 9887765554 555666777788888889999999999999999999999999999999999999975
No 3
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=100.00 E-value=3e-97 Score=882.35 Aligned_cols=636 Identities=22% Similarity=0.274 Sum_probs=467.2
Q ss_pred cccccceEEEEcccccHHHHHHHhcccCceeeeecCCCCC-chhhhhhHhHhhhHHHHHHHHHHHHHHHhcCCCCCCCCC
Q 003454 15 RSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKS-PFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPV 93 (819)
Q Consensus 15 RSe~M~~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln~~~~-~fqR~f~~~i~RceE~erkL~fl~~~i~k~~i~~~~~~~ 93 (819)
++++|++++++.|++.+++++++|+++|+||++|.+.+.+ ...+++ .++|+++.+.++++++..++.+...... .
T Consensus 2 ~i~kM~kv~l~~~~~~~~~~l~~L~~lg~vhi~~~~~~~~~~~~~~~---~~~~~~~~~~l~~L~~~~~~~~~~~~~~-~ 77 (646)
T PRK05771 2 APVRMKKVLIVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKL---RSLLTKLSEALDKLRSYLPKLNPLREEK-K 77 (646)
T ss_pred CceeeEEEEEEEEHHHHHHHHHHHHhCCCEEEeecccccchhHHhHH---HHHHHHHHHHHHHHHHhccccccchhhh-c
Confidence 6799999999999999999999999999999999987754 334555 4556666777888888877765432211 1
Q ss_pred CCCCCcHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhhhhhhhhhcccCcc
Q 003454 94 SGPDLDLEE----LEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDY 169 (819)
Q Consensus 94 ~~~~~~l~e----lE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 169 (819)
+.+..+.++ .+..+++++++++++.++.++|+++.+++.+....|+ .|.+ .+
T Consensus 78 ~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~l~---------------------~~~~---ld 133 (646)
T PRK05771 78 KVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLE---------------------PWGN---FD 133 (646)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------hhhc---CC
Confidence 122234433 3556666666676666666666666666654443333 3311 00
Q ss_pred cccccchhhhhccCCCCCCcceEEEeEEecccHHHHHHHHHHhhCCcEEeeecCCCccccCcccccccceEEEEEEEeCh
Q 003454 170 ADTASLLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGE 249 (819)
Q Consensus 170 ~~~~ll~~~e~~~~~~~~~~~~~i~G~I~~~~~~~f~~~l~R~~rgn~~~~~~~i~~~~~~~~~~~~~~k~vfvv~~~~~ 249 (819)
.+...+ ....++.+..|++|+++.++.+ ...... ...++ ...+++++++++.++
T Consensus 134 ~~l~~~---------~~~~~~~~~~G~i~~~~~~~~~-----~~~~~~----------~~~~~--~~~~~~~~~vvv~~~ 187 (646)
T PRK05771 134 LDLSLL---------LGFKYVSVFVGTVPEDKLEELK-----LESDVE----------NVEYI--STDKGYVYVVVVVLK 187 (646)
T ss_pred CCHHHh---------CCCCcEEEEEEEecchhhhhHH-----hhccCc----------eEEEE--EecCCcEEEEEEEEh
Confidence 010101 0124688999999988876521 101111 11111 223445677777777
Q ss_pred hhHHHHHHHHhhcCceEeeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003454 250 QARTKILKICEAFGANCYPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTL 329 (819)
Q Consensus 250 ~~~~kv~kI~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~iy~~l 329 (819)
+..+++.++|++++|+++++|+ ++++.+.++++++++++++++++++++++++..+.....+..|+.++..++..++++
T Consensus 188 ~~~~~~~~~l~~~~f~~~~~p~-~~~p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 266 (646)
T PRK05771 188 ELSDEVEEELKKLGFERLELEE-EGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEAL 266 (646)
T ss_pred hhHHHHHHHHHHCCCEEecCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999 899999999999999999999999999999999888888888999999999999999
Q ss_pred hcccccccCceEEEEEeeecccHHHHHHHHHhhhccCCCceeeEeeec-CCCCCCCccccccchhhHHHHHHHhhcCCCC
Q 003454 330 NMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVM-DSMESPPTYFRTNRFTNAFQEIVDAYGVARY 408 (819)
Q Consensus 330 n~~~~~~t~~~~~~~gWvP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~pPt~l~nn~~~~pFe~iv~~Yg~P~Y 408 (819)
+++ ..|+++++++||||+++++++++.+++...+ .+.....++ +++++|||+++||+|++|||.+|+|||+|+|
T Consensus 267 ~~~--~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~~---~~~v~~~~~~~~~~~~Pt~l~N~~~~~pFE~lv~mYg~P~Y 341 (646)
T PRK05771 267 SKF--LKTDKTFAIEGWVPEDRVKKLKELIDKATGG---SAYVEFVEPDEEEEEVPTKLKNPKFIKPFESLTEMYSLPKY 341 (646)
T ss_pred Hhh--hcCCcEEEEEEEeehhHHHHHHHHHHHhcCC---cEEEEEeCCCCcCCCCCEEeeCCchhhhHHHHHHHcCCCCC
Confidence 854 5688999999999999999999999986533 233444555 4568899999999999999999999999999
Q ss_pred CccCCchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhHHHHHHHHhHHHHHHHHHhccc
Q 003454 409 QEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEF 488 (819)
Q Consensus 409 ~EidPt~~~~itFp~~FG~MfGD~G~Glll~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ryil~~~gi~si~~G~lyg~f 488 (819)
+|+||||++|+|||+||||||||+|||++++++|++++++.++. .+ .+...++++++||++|++||++||||
T Consensus 342 ~EiDPT~~~ai~f~lfFGmM~gD~GyGLil~l~~~~l~~~~~k~-----~~---~~~~~~~il~~~gi~sii~G~lyG~f 413 (646)
T PRK05771 342 NEIDPTPFLAIFFPLFFGMMLGDAGYGLLLLLIGLLLSFKLKKK-----SE---GLKRLLKILIYLGISTIIWGLLTGSF 413 (646)
T ss_pred CCcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccc-----cH---HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999887653221 11 23345789999999999999999999
Q ss_pred ccCcccccCCccccccCCCCCCcccccccccCCCCCCcCCCCCCCCCCCccccch-hHHHHHHHHHHHHHHHHHHHHHHH
Q 003454 489 FSVPYHIFGGSAYRCRDTTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNS-LKMKMSILLGVTQMNLGIILSYFD 567 (819)
Q Consensus 489 Fg~~~~~fg~s~~~~~~~~~~~~~~~~~~~~~~~y~fgidp~w~~~~~~l~f~ns-~~m~~SiiiGv~~m~~G~~l~~~n 567 (819)
||.+...++ ..| .+++..++.|..+.+ ++ .+|++|+++|++||++|++++++|
T Consensus 414 FG~~~~~~~-~~~--------------------~~~~~~~~~~~~~~~-----~~~~~l~lsl~iGvi~i~~g~~l~~~~ 467 (646)
T PRK05771 414 FGFSLPIFL-PGG--------------------YLELPEGYPSLSTEN-----DVMTILIISLLIGVIHLFLGLLLGFIN 467 (646)
T ss_pred hcCcccccc-ccc--------------------cccccCCccccCCCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998776554 211 111222223333322 22 358999999999999999999999
Q ss_pred hhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCCccccccCchHHHHHHHHHHH
Q 003454 568 ARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLAT 647 (819)
Q Consensus 568 ~~~~~~~~~~~~~~ip~~~fl~~~fgyl~~lii~kw~~~~~p~l~~~~i~m~l~~~~~~~~~~l~~g~~~~~~~ll~~~~ 647 (819)
++++|++.+++++.+||+++++|++.++...+. +. .+ ..+. ..+..+++++++
T Consensus 468 ~~~~~~~~~a~~~~~~w~l~~~g~~~~~~~~~~--~~----------------~~--------~~~~-~~~~~~~~~~g~ 520 (646)
T PRK05771 468 NVRKGDYKDAFLAQLGWLLILLGILLIVLGGFG--LV----------------VG--------LGPL-GLIGKYLIIGGV 520 (646)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhh--hh----------------cc--------chHH-HHHHHHHHHHHH
Confidence 999999999999999999998887443321100 00 00 0000 011112222222
Q ss_pred HhhhhhccchhhHHh-hhhhccccCccccccCCCccccCCCCCccccCCCCCchhHHHHHHHHHHhHhhhhhhhhhHHHH
Q 003454 648 VAVPWMLFPKPFILR-KLHTERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYL 726 (819)
Q Consensus 648 ~~v~~ml~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~q~i~tiE~~lg~isnt~SYl 726 (819)
+++ ++. +++.+ +.+..+. +.+.+| +++++|||+||+
T Consensus 521 ~~~---------~~~~~~~~~-------------------------------~~~~~~~--~~~~~~-~~~~~~d~lSY~ 557 (646)
T PRK05771 521 VLI---------ILGEGIDGK-------------------------------SLGGALG--GLGLYE-ITGYLGDVLSYA 557 (646)
T ss_pred HHH---------HHhcchhcc-------------------------------ccchhhh--hhhHHH-HHHHHHHHHHHH
Confidence 221 111 11110 0111111 456667 566999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhccCccccCCccc
Q 003454 727 RLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKF 806 (819)
Q Consensus 727 RL~AL~LAh~~La~vf~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~vll~me~L~aflH~LRL~~vEFf~KFY~G~G~~F 806 (819)
||+|+||||++||.|||.|+.+++. ..++++.++|+++++++|+ +|++|++|++|||++||||||||||||+|+|++|
T Consensus 558 RL~AlgLa~~~ia~~~n~la~~~~~-~~~~~~~i~~ili~v~Gh~-~ni~L~~L~~~vh~lRL~yvEff~kfyeg~G~~f 635 (646)
T PRK05771 558 RLMALGLAGAGIAMAFNLMAGLLPP-SIGVIGIIVGIIIFIFGHL-LNIALSILGAFVHGLRLHYVEFFGKFYEGGGKKF 635 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhhhhccCCCeec
Confidence 9999999999999999999987643 2356677788888888876 5899999999999999999999999999999999
Q ss_pred cccccccccc
Q 003454 807 RPFSFALIND 816 (819)
Q Consensus 807 ~Pf~~~~~~~ 816 (819)
+||+.++.+.
T Consensus 636 ~Pf~~~~ky~ 645 (646)
T PRK05771 636 NPFKAIRKYT 645 (646)
T ss_pred CCcccccccC
Confidence 9999888765
No 4
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=100.00 E-value=1.1e-90 Score=819.23 Aligned_cols=499 Identities=29% Similarity=0.444 Sum_probs=414.9
Q ss_pred cceEEEeEEecccHHHHHHHHHHhhCCcEEeeecCCCccccCcccccccceEEEEEEEeChhhHHHHHHHHhhcCceEee
Q 003454 189 GLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFSGEQARTKILKICEAFGANCYP 268 (819)
Q Consensus 189 ~~~~i~G~I~~~~~~~f~~~l~R~~rgn~~~~~~~i~~~~~~~~~~~~~~k~vfvv~~~~~~~~~kv~kI~~~~~~~~~~ 268 (819)
......|..+.++.+.+.+.+-+. +....+...+.+++|+.++++...++++++++.+++.++
T Consensus 157 ~~~v~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~ 219 (660)
T COG1269 157 FLLVRLGLVRREKLEALVGVIEDE-----------------VALYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYE 219 (660)
T ss_pred eEEEEeeeehhhhhhHHHhhcccc-----------------cchhhhccccceEEEEEecccchHHHHHHHHhCCcEEee
Confidence 345666777777766665544110 000002334567888888999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCceEEEEEeee
Q 003454 269 VSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTLNMLNFDVTKKCLVGEGWCP 348 (819)
Q Consensus 269 ~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~iy~~ln~~~~~~t~~~~~~~gWvP 348 (819)
+|+.+..+.+.+.++++++++.++++++++++.+.+.++++..+..|+..+..|+.+++..+.++ .|+++++++||||
T Consensus 220 v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~e~~~~~~~~~~~--~t~~~~~~eGWvP 297 (660)
T COG1269 220 VPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEIEKALGDVLSKLA--RTEYTLAIEGWVP 297 (660)
T ss_pred ccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccceEEEEEEecc
Confidence 99987779999999999999999999999999999999999999999999999999999998654 5668999999999
Q ss_pred cccHHHHHHHHHhhhccCCCceeeEeeecCCC---CCCCccccccchhhHHHHHHHhhcCCCCCccCCchhHHHHHHHHH
Q 003454 349 IFAKAQIQEVLQRATFDSNSQVGTIFHVMDSM---ESPPTYFRTNRFTNAFQEIVDAYGVARYQEANPAVYAVITFPFLF 425 (819)
Q Consensus 349 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~pPt~l~nn~~~~pFe~iv~~Yg~P~Y~EidPt~~~~itFp~~F 425 (819)
+++++++++.+++++++ .+.++..+++ ++|||+++||+|++|||.+|+|||+|+|+|||||+++++|||+||
T Consensus 298 ~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~e~~Pt~l~n~~~i~~Fe~l~emY~iPkY~EidPt~~~a~~Fp~fF 372 (660)
T COG1269 298 ADEVEKLKKIINRATGG-----AAYFEVSETDEDKEEVPTKLRNPKFISPFESLTEMYGIPKYGEIDPTPFLALFFPLFF 372 (660)
T ss_pred HHHHHHHHHHHHHhcCC-----ceEEEeecCCCccCCCCEeecCCcccchHHHHHHHhcCCCCCCcCCcchHHHHHHHHH
Confidence 99999999999987652 2556665554 789999999999999999999999999999999999999999999
Q ss_pred HHHhcchhHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhHHHHHHHHhHHHHHHHHHhcccccCcccccCCccccccC
Q 003454 426 AVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPYHIFGGSAYRCRD 505 (819)
Q Consensus 426 G~MfGD~G~Glll~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ryil~~~gi~si~~G~lyg~fFg~~~~~fg~s~~~~~~ 505 (819)
|+||||+|||++++++|++++++.++...+..+++ ..+++++|++|++||++||+|||.+..
T Consensus 373 G~M~gD~gyGlll~l~sl~l~~~~~~~~~~~~~~l-------~~~~~~~~i~t~i~G~l~g~~fG~~~~----------- 434 (660)
T COG1269 373 GIMFGDLGYGLLLFLISLLLLRYFKKRLPEGLKKL-------GKILLYLGISTIIWGFLYGEFFGPAVL----------- 434 (660)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhcccccchhHHHH-------HHHHHHHHHHHHHHHHHhccccCCccc-----------
Confidence 99999999999999999999987663112222332 247889999999999999999996221
Q ss_pred CCCCCcccccccccCCCCCCcCCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHH
Q 003454 506 TTCSDAYTAGLVKYREPYPFGVDPSWRGSRSELPFLNSLKMKMSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQL 585 (819)
Q Consensus 506 ~~~~~~~~~~~~~~~~~y~fgidp~w~~~~~~l~f~ns~~m~~SiiiGv~~m~~G~~l~~~n~~~~~~~~~~~~~~ip~~ 585 (819)
.+.+|++++..|+...+.+.+ +++|++|+++|++||++|++++++|.++.+++.++ ++|++
T Consensus 435 --------------~~~~p~~~~~~~~~~~~~~~~--~~~m~~sl~iG~~hl~~G~~lg~~~~~~~~~~~~a---~~~~~ 495 (660)
T COG1269 435 --------------LSTLPIGLLFVYHGLDEGLLF--SNILILSLLIGVLHLSLGLLLGFINRVRSGDIKGA---ILPQL 495 (660)
T ss_pred --------------cccCCcccccccccccchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH---hhhhH
Confidence 114678888889888777766 66899999999999999999999999997777766 46777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCCccccccCchHHHHHHHHHHHHhhhhhccchhhHHhhhh
Q 003454 586 IFLNSLFGYLSLLIIIKWCTGSQADLYHVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLH 665 (819)
Q Consensus 586 ~fl~~~fgyl~~lii~kw~~~~~p~l~~~~i~m~l~~~~~~~~~~l~~g~~~~~~~ll~~~~~~v~~ml~~~p~~~~~~~ 665 (819)
+++.+++|++.+++.++|+. |.++.+.++++..++. + .+++++++|++
T Consensus 496 ~w~~~~~G~~~~~~~~~~~~---~~l~~~~~~~~~~~g~-------------~--~llvv~~i~~~-------------- 543 (660)
T COG1269 496 LWLLIILGLLLLILGYKWSV---PELLGMVGAMFGAFGI-------------L--GLLVVGLILVP-------------- 543 (660)
T ss_pred HHHHHHHHHHHHHHHhhhcc---cchhhHHHHHhhhccH-------------H--HHHHHHHHHcc--------------
Confidence 87888899999999999986 7888888877766541 0 13333444332
Q ss_pred hccccCccccccCCCccccCCCCCccccCCCCCchhHHHHHHHHHHhHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHH
Q 003454 666 TERFQGRTYGILGTSEMDLEVEPDSARQHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEK 745 (819)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~i~q~i~tiE~~lg~isnt~SYlRL~AL~LAh~~La~vf~~~ 745 (819)
+...++|.++++++|+|++||++||+||||+||||++||.++|.|
T Consensus 544 -----------------------------------~~~~~~~~i~~~~~~~~~~s~i~SY~RL~Al~La~~~ia~~~n~m 588 (660)
T COG1269 544 -----------------------------------GLVAIGQGILGFEGVLSLLSDVLSYLRLLALGLAGASIASVVNLM 588 (660)
T ss_pred -----------------------------------hHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234577899999999999999999999999999999999999999
Q ss_pred HHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhccCccccCCccccccccccccccC
Q 003454 746 VLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFALINDEE 818 (819)
Q Consensus 746 ~~~~~~~~~~~~~~~~g~~i~~~~~~~vll~me~L~aflH~LRL~~vEFf~KFY~G~G~~F~Pf~~~~~~~~~ 818 (819)
+..+..+... +.++|+++++++|++ |++|++|++|||+|||||||||||||+|+|++|+||+..+.++++
T Consensus 589 ~~~~~~~~~~--~~i~giii~i~Gh~~-n~~l~il~~~vH~lRLh~VEffskFyeG~G~~f~Pf~~~~~~~~~ 658 (660)
T COG1269 589 TGLLIGSVPF--GIILGIIILIFGHLL-NIALSILGAGVHGLRLHYVEFFSKFYEGGGRKFEPFRAERNYTEI 658 (660)
T ss_pred HHHhcccccc--hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccCCCcCCCccccccccccc
Confidence 9876643322 267889999988885 799999999999999999999999999999999999999988765
No 5
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=90.16 E-value=2.2 Score=45.74 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=55.2
Q ss_pred eEEEEcccccHHHHHHHhcccCceeeeecCCCCCchhhhhhHhHhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcH
Q 003454 21 FVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDL 100 (819)
Q Consensus 21 ~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln~~~~~fqR~f~~~i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l 100 (819)
.+++=+|.+.-++.+++|+++|.|.-++.+.++ ....|+..-.|++..+....-+.+.+.|.+ ...++
T Consensus 97 ~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~D--vT~~y~D~~arl~~l~~~~~rl~~ll~ka~----------~~~d~ 164 (262)
T PF14257_consen 97 SLTIRVPADKFDSFLDELSELGKVTSRNISSED--VTEQYVDLEARLKNLEAEEERLLELLEKAK----------TVEDL 164 (262)
T ss_pred EEEEEECHHHHHHHHHHHhccCceeeeeccccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CHHHH
Confidence 788999999999999999999988888887643 234454444455555444444445454432 22245
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003454 101 EELEIQLAEHEHELIETNS 119 (819)
Q Consensus 101 ~elE~~l~~~e~el~e~~~ 119 (819)
-++|.++.+++.|+.++..
T Consensus 165 l~ie~~L~~v~~eIe~~~~ 183 (262)
T PF14257_consen 165 LEIERELSRVRSEIEQLEG 183 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666655555555544444
No 6
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=84.35 E-value=23 Score=43.11 Aligned_cols=96 Identities=19% Similarity=0.140 Sum_probs=59.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHhhhhhhccCCCcchhhhhhhhhhcccCccccccc
Q 003454 96 PDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLE-FKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDYADTAS 174 (819)
Q Consensus 96 ~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E-~~~vL~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 174 (819)
+...++++++++++++++++++.++.+++.+.+..+.. ....+....+..+ .
T Consensus 213 p~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------~ 265 (646)
T PRK05771 213 PSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAE---------------------------A 265 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------H
Confidence 44567788888888888888877777776666554432 2222221111000 0
Q ss_pred chhhhhccCCCCCCcceEEEeEEecccHHHHHHHHHHhhCCcEEeeecCC
Q 003454 175 LLEQDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPA 224 (819)
Q Consensus 175 l~~~e~~~~~~~~~~~~~i~G~I~~~~~~~f~~~l~R~~rgn~~~~~~~i 224 (819)
.+ . .....++-.+.|.||.++.+++++.+.+.+.+.+++...+.
T Consensus 266 ~~---~---~~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~~~~~v~~~~~ 309 (646)
T PRK05771 266 LS---K---FLKTDKTFAIEGWVPEDRVKKLKELIDKATGGSAYVEFVEP 309 (646)
T ss_pred HH---h---hhcCCcEEEEEEEeehhHHHHHHHHHHHhcCCcEEEEEeCC
Confidence 00 0 00123577889999999999999999998877666655443
No 7
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=64.43 E-value=35 Score=30.34 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHHHHHHHHHHHHHHHH
Q 003454 548 MSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLI 599 (819)
Q Consensus 548 ~SiiiGv~~m~~G~~l~~~n~~~~~~~~~~~~~~ip~~~fl~~~fgyl~~li 599 (819)
-.++.|++.+.++.++.+++.-+.++..+-.+..+.-+.|..|+.--+..+|
T Consensus 13 ~vli~GiiLL~~aCIfAfidfsK~~~~~~~~wRalSii~FI~giil~lG~~i 64 (92)
T PF05767_consen 13 GVLIGGIILLIAACIFAFIDFSKNTKPTDYTWRALSIICFILGIILTLGIVI 64 (92)
T ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999988777766666666667666533333333
No 8
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=62.86 E-value=40 Score=31.02 Aligned_cols=60 Identities=25% Similarity=0.363 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003454 65 KRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEF 134 (819)
Q Consensus 65 ~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~ 134 (819)
.|.++.++++.-+|..+.. -|...++.+|+-.+.+...+++.++.+.+.+.....-|.|.
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~----------LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEH----------LPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445558888888887753 24667899999999999999999998888887776666543
No 9
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=60.48 E-value=26 Score=28.36 Aligned_cols=33 Identities=18% Similarity=0.364 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQTYNELL 132 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~ 132 (819)
++++|.++.+++..+..+.++.+.+++...++.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666655555555555544
No 10
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=54.91 E-value=74 Score=38.98 Aligned_cols=39 Identities=31% Similarity=0.432 Sum_probs=36.7
Q ss_pred ccccccceEEEEcccccHHHHHHHhcccCceeeeecCCC
Q 003454 14 MRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSD 52 (819)
Q Consensus 14 fRSe~M~~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln~~ 52 (819)
+|+++|+++.++.+++..+++++.||+.|++|++|++.+
T Consensus 1 ~~~~~M~kv~i~~~~~~~~~vi~~L~~~g~~~~~d~~~~ 39 (660)
T COG1269 1 MRPEKMKKVSIIGLKSELDPVLAELHDFGLVHLEDLEEG 39 (660)
T ss_pred CchhhheeEEEEeehhhhhHHHHHHHHcCeEEeeccccc
Confidence 489999999999999999999999999999999999754
No 11
>PF14182 YgaB: YgaB-like protein
Probab=50.65 E-value=1.1e+02 Score=26.70 Aligned_cols=19 Identities=21% Similarity=0.630 Sum_probs=13.6
Q ss_pred hHhHhhhHHHHHHHHHHHH
Q 003454 61 VNQVKRCGEMSRKLRFFKE 79 (819)
Q Consensus 61 ~~~i~RceE~erkL~fl~~ 79 (819)
.+++.||.++|+.|.-++.
T Consensus 20 QsElERCqeIE~eL~~l~~ 38 (79)
T PF14182_consen 20 QSELERCQEIEKELKELER 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567888888877776655
No 12
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=50.13 E-value=14 Score=31.53 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=34.1
Q ss_pred cccccccceEEEEcccccHHHHHHHhcccCceeeeecCC
Q 003454 13 LMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNS 51 (819)
Q Consensus 13 lfRSe~M~~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln~ 51 (819)
.+-|.+|.++.|++..|.+++++++|.++.-|.=.+.+.
T Consensus 24 ~Y~Skk~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~ 62 (71)
T PF09902_consen 24 HYVSKKMKYVVLYVNEEDVEEIIEKLKKLKFVKKVEPSP 62 (71)
T ss_pred EEEECCccEEEEEECHHHHHHHHHHHhcCCCeeEEeccC
Confidence 367999999999999999999999999999887666543
No 13
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=50.13 E-value=4.7e+02 Score=30.39 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=21.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYN 129 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~ 129 (819)
-++++..+++..|+|++.+..+.+.|+.+..
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3677777777777777777777777666543
No 14
>PRK02302 hypothetical protein; Provisional
Probab=49.77 E-value=18 Score=32.14 Aligned_cols=52 Identities=15% Similarity=0.276 Sum_probs=40.1
Q ss_pred ccccccceEEEEcccccHHHHHHHhcccCceeeeecCCCCCchhhhhhHhHhh
Q 003454 14 MRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKR 66 (819)
Q Consensus 14 fRSe~M~~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln~~~~~fqR~f~~~i~R 66 (819)
+-|.+|.++-|++..+.+++++..|.++..|.=.+.+.- +-....|+..+-|
T Consensus 31 Y~Skk~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~~-~~l~~~f~~~l~r 82 (89)
T PRK02302 31 YHSKRSRYLVLYVNKEDVEQKLEELSKLKFVKKVRPSAI-DEIDQNFVGNLYR 82 (89)
T ss_pred EEeccccEEEEEECHHHHHHHHHHHhcCCCeeEEcccCc-hhccchhhhhhhc
Confidence 569999999999999999999999999999987777642 1223444444444
No 15
>PRK10692 hypothetical protein; Provisional
Probab=48.05 E-value=66 Score=28.39 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 003454 548 MSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTG 606 (819)
Q Consensus 548 ~SiiiGv~~m~~G~~l~~~n~~~~~~~~~~~~~~ip~~~fl~~~fgyl~~lii~kw~~~ 606 (819)
+-..+|.+-|..|+..++.|++..=+ +||++.-.+++|..+-. ..|++|
T Consensus 12 ~lMglGmv~Mv~gigysi~~~i~~L~--------Lp~~~~~gal~~IFiGA--llWL~G 60 (92)
T PRK10692 12 VLMGLGLVVMVVGVGYSILNQLPQLN--------LPQFFAHGALLSIFVGA--LLWLAG 60 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCC--------chHHHHhhHHHHHHHHH--HHHHhc
Confidence 34568999999999999999977544 47766555555543322 246654
No 16
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=45.38 E-value=2.3e+02 Score=35.41 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=19.2
Q ss_pred cceEEEeEEecccHHHHHHHHHHhhCCc
Q 003454 189 GLRFISGIICKSKVLRFERMLFRATRGN 216 (819)
Q Consensus 189 ~~~~i~G~I~~~~~~~f~~~l~R~~rgn 216 (819)
++-.+.|.||.++.+++++.+.+.+.+.
T Consensus 289 ~~~~~~GWvP~~~~~~l~~~l~~~~~~~ 316 (759)
T PF01496_consen 289 NVFILEGWVPEKDVEELKKALEEATDGS 316 (759)
T ss_dssp -SEEEEEEE-TTTHHHHHHT--SS-EEE
T ss_pred cEEEEEEeccHHHHHHHHHHHHhhcccc
Confidence 4668899999999999999986665543
No 17
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=44.55 E-value=2.1e+02 Score=27.50 Aligned_cols=49 Identities=14% Similarity=0.308 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVS 147 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~~~l~~ 147 (819)
.+.++|..+.++.+++.+-.++.++.-+.++++.|++..|.+++..+++
T Consensus 57 riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~ 105 (131)
T PF10158_consen 57 RIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQ 105 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888888888888888888877654
No 18
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.48 E-value=1.3e+02 Score=35.62 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhCC
Q 003454 203 LRFERMLFRATRG 215 (819)
Q Consensus 203 ~~f~~~l~R~~rg 215 (819)
..+...+.|++.+
T Consensus 381 ~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 381 IDLNSLIRRIKLG 393 (581)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 19
>PF03223 V-ATPase_C: V-ATPase subunit C; InterPro: IPR004907 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C subunit that is part of the V1 complex, and is localised to the interface between the V1 and V0 complexes []. This subunit does not show any homology with F-ATPase subunits. The C subunit plays an essential role in controlling the assembly of V-ATPase, acting as a flexible stator that holds together the catalytic (V1) and membrane (V0) sectors of the enzyme []. The release of subunit C from the ATPase complex results in the dissociation of the V1 and V0 subcomplexes, which is an important mechanism in controlling V-ATPase activity in cells. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033180 proton-transporting V-type ATPase, V1 domain; PDB: 1U7L_A.
Probab=44.40 E-value=5.2e+02 Score=29.33 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=71.8
Q ss_pred cceEEEeEEecccHHHHHHHHHHhhCCcEEeeecCCCccccCcccccccceEEE-EEEEeChhhHHHHHHHHhhcCceEe
Q 003454 189 GLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIF-VVFFSGEQARTKILKICEAFGANCY 267 (819)
Q Consensus 189 ~~~~i~G~I~~~~~~~f~~~l~R~~rgn~~~~~~~i~~~~~~~~~~~~~~k~vf-vv~~~~~~~~~kv~kI~~~~~~~~~ 267 (819)
++..+.=+||+.....|.+.-.+.+.-.+ |.+. .-+..+. +...| |+.| +...++.+.-|+.-+|..-
T Consensus 179 yL~Tl~VvVPk~~~~ewl~~YEtL~~~VV-------PrSs-~~i~eD~-ey~L~~VtlF--kk~~~eF~~~~re~kf~vR 247 (371)
T PF03223_consen 179 YLTTLLVVVPKNSVKEWLKSYETLTDMVV-------PRSS-KKIAEDS-EYVLFSVTLF--KKVVDEFKNKCREKKFIVR 247 (371)
T ss_dssp SEEEEEEEEEGGGHHHHHHHGGGSSTTB--------TT---EEEEE-S-SEEEEEEEEE--GGGHHHHHHHHHHTT-EEE
T ss_pred cceEEEEEechhhHHHHHHHHhccCCccC-------CChH-HhhhcCC-CeEEEEEEEE--eccHHHHHHHHHHcCCeee
Confidence 57777889999999999987654432111 1000 0011222 23333 4444 5556788888998888877
Q ss_pred eCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHhhcccccccCceEEEEE
Q 003454 268 PVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALT-SIGFHLTKWMNMVRREKA-VYDTLNMLNFDVTKKCLVGEG 345 (819)
Q Consensus 268 ~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~-~i~~~l~~~~~~~~kek~-iy~~ln~~~~~~t~~~~~~~g 345 (819)
++.-+++... +..+++++++.+.++......+..+ ...+....|.- ++--+. +...| +++..-++..+--
T Consensus 248 dF~y~ee~~~----~~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiH-lKalRvFVESVL---RYGLP~~F~a~ll 319 (371)
T PF03223_consen 248 DFKYDEEESE----EEKEEREKLETEEKKQWGELLRWCKTNFSEAFSAWIH-LKALRVFVESVL---RYGLPPNFQAFLL 319 (371)
T ss_dssp -----HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HH-SS--EEEEEE
T ss_pred ecccCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhhhhh---hcCCCCCceEEEE
Confidence 6654444332 2223333333333222222222222 12233334421 111111 22333 4554444444444
Q ss_pred eeecccHHHHHHHHHhhhcc
Q 003454 346 WCPIFAKAQIQEVLQRATFD 365 (819)
Q Consensus 346 WvP~~~~~~l~~~l~~~~~~ 365 (819)
..+.+...++++.|.+.-..
T Consensus 320 ~p~~k~~kKl~~~L~~~f~~ 339 (371)
T PF03223_consen 320 KPNKKKEKKLRKELNKLFGY 339 (371)
T ss_dssp EE-TT-HHHHHHHHHHHHGG
T ss_pred EeCCchHHHHHHHHHHHhcc
Confidence 55567889999999876443
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.37 E-value=1.3e+02 Score=31.13 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=47.4
Q ss_pred CceeeeecCCCCCchhhhhh----HhHhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 003454 42 GLLQFRDLNSDKSPFQRTFV----NQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIET 117 (819)
Q Consensus 42 g~Vqf~Dln~~~~~fqR~f~----~~i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~ 117 (819)
|-.|++|-+...-=...+|. .-..|..++++.+.-+++++....- .-.....++++.+++.++++.++
T Consensus 66 ~w~~Vr~~~G~~GWV~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~--------~~~~~~~~l~~~~~~~~~~~~~L 137 (206)
T PRK10884 66 NYAQIRDSKGRTAWIPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDN--------TWNQRTAEMQQKVAQSDSVINGL 137 (206)
T ss_pred CEEEEEeCCCCEEeEEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777775533211122221 1245677778888888777754210 11134555666666666666666
Q ss_pred HhhHHHHHHHHHHHHHH
Q 003454 118 NSNSEKLRQTYNELLEF 134 (819)
Q Consensus 118 ~~n~~~L~~~~~~l~E~ 134 (819)
.+++++|++++.++...
T Consensus 138 ~~~n~~L~~~l~~~~~~ 154 (206)
T PRK10884 138 KEENQKLKNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666776666655433
No 21
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=42.33 E-value=80 Score=27.74 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Q 003454 548 MSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTG 606 (819)
Q Consensus 548 ~SiiiGv~~m~~G~~l~~~n~~~~~~~~~~~~~~ip~~~fl~~~fgyl~~lii~kw~~~ 606 (819)
.-..+|.+-|..|+..++.|++..=+ +||++.-.++++..+-. ..|++|
T Consensus 12 ~lMglGmv~Mv~gigysi~~~~~~L~--------Lp~~~~~gal~~IFiGA--llWL~G 60 (89)
T PF10762_consen 12 VLMGLGMVVMVGGIGYSILSQIPQLG--------LPQFLAHGALFSIFIGA--LLWLVG 60 (89)
T ss_pred HHHHHhHHHHHHhHHHHHHHhcccCC--------CcHHHHhhHHHHHHHHH--HHHHhc
Confidence 34567999999999999999977544 46666545554433222 246554
No 22
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=40.61 E-value=2.6e+02 Score=33.53 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=24.4
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003454 65 KRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKL 124 (819)
Q Consensus 65 ~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L 124 (819)
.+..+++..|--.++...+..... -...++++++.++.++.++.++.+.++.|
T Consensus 75 ~~~~~ie~~L~~ae~~~~~~rf~k-------a~~~i~~~~~~l~~~e~~i~~i~~~l~~L 127 (560)
T PF06160_consen 75 KQLPEIEEQLFEAEEYADKYRFKK-------AKQAIKEIEEQLDEIEEDIKEILDELDEL 127 (560)
T ss_pred HhhHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555443321 11235555555555555554444444443
No 23
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=40.61 E-value=98 Score=31.45 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQTYNEL 131 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l 131 (819)
.+..+++++++..|+.+.+++.+.|+++-..+
T Consensus 156 ~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 156 NKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555544444
No 24
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.32 E-value=1.3e+02 Score=24.49 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQTYNELLEF 134 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~ 134 (819)
+..++..++.+.+|..++.+..+.+.++..++..+
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666666666666555443
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=38.39 E-value=94 Score=32.82 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQT 127 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~ 127 (819)
.+.+|..+..++.+++.+.++++.|...
T Consensus 136 ~e~~E~ki~eLE~el~~~~~~lk~lE~~ 163 (237)
T PF00261_consen 136 AEAAESKIKELEEELKSVGNNLKSLEAS 163 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhchhHHHHHHHHHHHHHHHHHhhhh
Confidence 3334444444444444444444444433
No 26
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=37.46 E-value=2.2e+02 Score=26.85 Aligned_cols=38 Identities=24% Similarity=0.296 Sum_probs=32.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003454 96 PDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLE 133 (819)
Q Consensus 96 ~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E 133 (819)
...-.++|++..+.++.+++.+.++.+++++++.++.+
T Consensus 68 k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~ 105 (119)
T COG1382 68 KEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQS 105 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34458889999999999999999999999998887753
No 27
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=37.24 E-value=4.5e+02 Score=32.56 Aligned_cols=89 Identities=13% Similarity=0.013 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hh-----cc-c----ccc
Q 003454 277 RQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDT----------LN-----ML-N----FDV 336 (819)
Q Consensus 277 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~iy~~----------ln-----~~-~----~~~ 336 (819)
...+.+++++++++++++.+..+...++.+...+. .+++..++|-..-... .+ .+ . -..
T Consensus 91 ~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL-~E~~~vl~~t~~Ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (829)
T KOG2189|consen 91 PREIIDLEEQLEKLESELRELNANKEALKANYNEL-LELKYVLEKTDEFFSTSVQESFEDDETADLGEGPLESAEKGPFD 169 (829)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHhhhhhcccchhhhhcchhhhhhcccccchhccCCCC
Confidence 34466777888888888777666555544443332 2333333322211111 00 00 0 001
Q ss_pred cCceEEEEEeeecccHHHHHHHHHhhhccC
Q 003454 337 TKKCLVGEGWCPIFAKAQIQEVLQRATFDS 366 (819)
Q Consensus 337 t~~~~~~~gWvP~~~~~~l~~~l~~~~~~~ 366 (819)
+.+.-.+.|=||.++...+++.|-+++.++
T Consensus 170 ~~~l~FvaGvI~r~k~~~fER~LWRa~Rgn 199 (829)
T KOG2189|consen 170 GLKLGFVAGVINREKVFAFERMLWRACRGN 199 (829)
T ss_pred cccceeEEeeechhHHHHHHHHHHHHhccc
Confidence 123335689999999999999999988764
No 28
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=36.11 E-value=5e+02 Score=26.66 Aligned_cols=18 Identities=22% Similarity=0.371 Sum_probs=12.1
Q ss_pred CCchhHHHHHHHHHHHHh
Q 003454 412 NPAVYAVITFPFLFAVMF 429 (819)
Q Consensus 412 dPt~~~~itFp~~FG~Mf 429 (819)
|=+.++.-.|.+++|+|.
T Consensus 84 d~~L~~~~if~~~~gi~~ 101 (206)
T PF06570_consen 84 DNSLLFFGIFSLLFGIMG 101 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 335556667788888776
No 29
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=33.76 E-value=1.5e+02 Score=25.03 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHH
Q 003454 66 RCGEMSRKLRFFKE 79 (819)
Q Consensus 66 RceE~erkL~fl~~ 79 (819)
|++++|-++.|.+.
T Consensus 5 Ri~~LE~~la~qe~ 18 (69)
T PF04102_consen 5 RIEELEIKLAFQED 18 (69)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 30
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=33.34 E-value=1.1e+03 Score=30.05 Aligned_cols=39 Identities=8% Similarity=0.076 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003454 280 IREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNM 318 (819)
Q Consensus 280 ~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~ 318 (819)
.+++.+.++++.++++...+++.++...++..-..|...
T Consensus 680 ~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~ 718 (1200)
T KOG0964|consen 680 LKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAF 718 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345555555555555555555555555554444444433
No 31
>PRK02886 hypothetical protein; Provisional
Probab=33.21 E-value=49 Score=29.37 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=34.8
Q ss_pred ccccccceEEEEcccccHHHHHHHhcccCceeeeecCC
Q 003454 14 MRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNS 51 (819)
Q Consensus 14 fRSe~M~~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln~ 51 (819)
+-|.+|.++-|++..+.+.+++..|.++..|.=.+.+.
T Consensus 29 Y~Skr~kYvvlYvn~~~~e~~~~kl~~l~fVk~Ve~S~ 66 (87)
T PRK02886 29 YVSKRLKYAVLYCDMEQVEDIMNKLSSLPFVKRVEPSY 66 (87)
T ss_pred EEeccccEEEEEECHHHHHHHHHHHhcCCCeeEEcccC
Confidence 56899999999999999999999999999998777765
No 32
>PRK00295 hypothetical protein; Provisional
Probab=32.79 E-value=2.4e+02 Score=23.83 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHH
Q 003454 66 RCGEMSRKLRFFKE 79 (819)
Q Consensus 66 RceE~erkL~fl~~ 79 (819)
|++++|-++.|.+.
T Consensus 6 Ri~~LE~kla~qE~ 19 (68)
T PRK00295 6 RVTELESRQAFQDD 19 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555544443
No 33
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=32.46 E-value=1.6e+02 Score=34.52 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=44.7
Q ss_pred CCCCchhhhhhHhHhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003454 51 SDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNE 130 (819)
Q Consensus 51 ~~~~~fqR~f~~~i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~ 130 (819)
.+...++|+|.+.++-++.. +.-+.+.+.. .....+.++..++.++..+..+++++.+++++++.
T Consensus 343 e~e~~~vr~~e~eL~el~~~---~~~i~~~~~~------------~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~ 407 (570)
T COG4477 343 ETELGSVRKFEKELKELESV---LDEILENIEA------------QEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTS 407 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HHHHHHHhhc------------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33446667777655554333 5555554433 22347778888888888888888888888888877
Q ss_pred HH
Q 003454 131 LL 132 (819)
Q Consensus 131 l~ 132 (819)
+.
T Consensus 408 Lr 409 (570)
T COG4477 408 LR 409 (570)
T ss_pred HH
Confidence 73
No 34
>PRK02793 phi X174 lysis protein; Provisional
Probab=32.20 E-value=1.9e+02 Score=24.64 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHH
Q 003454 66 RCGEMSRKLRFFKE 79 (819)
Q Consensus 66 RceE~erkL~fl~~ 79 (819)
|++++|-++.|.+.
T Consensus 9 Ri~~LE~~lafQe~ 22 (72)
T PRK02793 9 RLAELESRLAFQEI 22 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 35
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.74 E-value=1.9e+02 Score=33.23 Aligned_cols=66 Identities=20% Similarity=0.253 Sum_probs=38.7
Q ss_pred hhhhhhHhHhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003454 56 FQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLE 133 (819)
Q Consensus 56 fqR~f~~~i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E 133 (819)
.++.+...-+++.+..++..-|+.++++. ..+++.+++++.+.+.++++++++++++..+++.+..
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~------------e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSL------------ETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 34444444555555555555555555432 1356666666666666677777777777776666653
No 36
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=31.64 E-value=1.2e+02 Score=25.67 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHhh
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYNEL-LEFKMVLQKAG 142 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l-~E~~~vL~~~~ 142 (819)
...++..+++++.+++.++.++.++|+++...+ ..-..+-+.|+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 455667777777777777777777777777776 44444444444
No 37
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.97 E-value=3e+02 Score=27.24 Aligned_cols=91 Identities=20% Similarity=0.300 Sum_probs=47.4
Q ss_pred cccccHHHHHHHhcccCceeeeecCC--------CC---------CchhhhhhHhHhhhHHHHHHHHHHHHHHHhcCCCC
Q 003454 26 IPVESAQRAVSYLGELGLLQFRDLNS--------DK---------SPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQS 88 (819)
Q Consensus 26 ~p~e~a~~~v~~Lgelg~Vqf~Dln~--------~~---------~~fqR~f~~~i~RceE~erkL~fl~~~i~k~~i~~ 88 (819)
+++..+-.+++.|.+.|.+..++.-. +. ..++..-...-.++.++....+-++.++....
T Consensus 30 ~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~--- 106 (169)
T PF07106_consen 30 VGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLS--- 106 (169)
T ss_pred ccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 45566778899999999888776421 11 11112211112222333333444444443211
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003454 89 SVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 89 ~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~ 126 (819)
...+.+++...++++++++.++.+.++.|++
T Consensus 107 -------~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 107 -------SEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred -------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2235666777777776666666665555554
No 38
>COG4471 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.83 E-value=62 Score=28.69 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=40.8
Q ss_pred ccccccceEEEEcccccHHHHHHHhcccCceeeeecCCCCCchhhhhhHhHhhh
Q 003454 14 MRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRC 67 (819)
Q Consensus 14 fRSe~M~~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln~~~~~fqR~f~~~i~Rc 67 (819)
+-|.++.++.|+++.+.-+++++.|..+-.|-=++++.- +-.+++|+++..+.
T Consensus 30 Y~Skk~kY~vlYvn~~~ve~~~~kl~~~kfVK~V~~s~~-~~Lk~~f~~~~~~~ 82 (90)
T COG4471 30 YVSKKSKYVVLYVNEQDVEQIVEKLSRLKFVKKVRVSHI-PYLKTEFEGNLHEA 82 (90)
T ss_pred EEecceeEEEEEECHHHHHHHHHHHhhceeeeecccccc-HHHHhHHhhchhHH
Confidence 458899999999999999999999999998876666542 22356666644443
No 39
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=30.81 E-value=1.9e+02 Score=31.07 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=53.9
Q ss_pred hHhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 003454 63 QVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAG 142 (819)
Q Consensus 63 ~i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~ 142 (819)
-+.+++|+|..++-|.++-.+ +...||.+|..+++..+...+-..+...|++....+.|...-|++++
T Consensus 16 aLqKIqelE~QldkLkKE~qQ------------rQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~r 83 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQ------------RQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTR 83 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 356777888877777665433 44569999999988877787777888888888888888777777776
Q ss_pred hhhh
Q 003454 143 GFLV 146 (819)
Q Consensus 143 ~~l~ 146 (819)
+-+.
T Consensus 84 qKls 87 (307)
T PF10481_consen 84 QKLS 87 (307)
T ss_pred HHhh
Confidence 6543
No 40
>PRK04325 hypothetical protein; Provisional
Probab=30.43 E-value=2.5e+02 Score=24.12 Aligned_cols=14 Identities=29% Similarity=0.475 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHH
Q 003454 66 RCGEMSRKLRFFKE 79 (819)
Q Consensus 66 RceE~erkL~fl~~ 79 (819)
|++++|-++.|.+.
T Consensus 10 Ri~~LE~klAfQE~ 23 (74)
T PRK04325 10 RITELEIQLAFQED 23 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 41
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=30.26 E-value=92 Score=34.53 Aligned_cols=58 Identities=26% Similarity=0.293 Sum_probs=34.9
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHhhccccchhh-HHHhhhhHHHHHHHHhHHHHHHHHHhcc
Q 003454 427 VMFGDWGHGICLLLGALVLIARERKLGNQKLGS-FMEMLFGGRYVLLLMSLFSIYCGLIYNE 487 (819)
Q Consensus 427 ~MfGD~G~Glll~l~~~~l~~~~~~~~~~~~~~-~~~~~~~~ryil~~~gi~si~~G~lyg~ 487 (819)
+-+||+.+-++++.+..++++..++..+++... +.+.+ -++..+.-+|.+.||+-|.-
T Consensus 23 FSvgdi~~~~~il~ll~~~~~~~~~~~k~~~~~~l~~~~---~~~~~~y~~F~~~WGlNY~R 81 (318)
T PF12725_consen 23 FSVGDILYYLLILFLLYYLIRLIRKIFKKKKRFKLLNIL---FFLSVLYFLFYLLWGLNYYR 81 (318)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHhhhhcCC
Confidence 458999998888777666665444332221111 12221 23456677888899998865
No 42
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.20 E-value=1.2e+02 Score=36.29 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=19.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003454 97 DLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELL 132 (819)
Q Consensus 97 ~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~ 132 (819)
..++..++..++.++.+|.+-.+..+.|++.++++.
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554
No 43
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.89 E-value=43 Score=30.86 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=31.5
Q ss_pred cccceEEEEcccccHHHHHHHhcccCceeeeecC
Q 003454 17 EKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLN 50 (819)
Q Consensus 17 e~M~~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln 50 (819)
+.|.|+.+++|+++..++-++|.+.|.-|+-|-.
T Consensus 3 ~~~~K~~vyVP~~~~e~vr~aL~~aGag~iG~Y~ 36 (109)
T COG3323 3 EPLYKIEVYVPEEYVEQVRDALFEAGAGHIGNYD 36 (109)
T ss_pred cceeEEEEEeCHHHHHHHHHHHHhcCCcceeccc
Confidence 5789999999999999999999999999999764
No 44
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=29.86 E-value=4.3e+02 Score=25.14 Aligned_cols=41 Identities=20% Similarity=0.266 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 003454 104 EIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGF 144 (819)
Q Consensus 104 E~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~~~ 144 (819)
...++++..++.+--++.+.....+..+.+...+|+.+..|
T Consensus 85 ~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~ 125 (132)
T PF10392_consen 85 QSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRF 125 (132)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444433
No 45
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.12 E-value=2.8e+02 Score=33.96 Aligned_cols=64 Identities=19% Similarity=0.264 Sum_probs=34.0
Q ss_pred hhhHhHhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003454 59 TFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELL 132 (819)
Q Consensus 59 ~f~~~i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~ 132 (819)
.+.+.+.+.++++..|+-+++++... |....+.++++.+++++.++.+.+.+.+.++++..++.
T Consensus 392 ~~~~~~~~~~~~e~el~~l~~~l~~~----------~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~ 455 (650)
T TIGR03185 392 AKSQLLKELRELEEELAEVDKKISTI----------PSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLK 455 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555432 22235666666666666666666555555555444443
No 46
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=28.68 E-value=1.1e+03 Score=28.52 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003454 278 QIIREVLSRLSELEATLDAGIRHRNK 303 (819)
Q Consensus 278 ~~~~~~~~~i~~l~~~l~~~~~~~~~ 303 (819)
+.++++..+++++..+++...+...+
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~q 472 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQ 472 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444443333
No 47
>PF07666 MpPF26: M penetrans paralogue family 26; InterPro: IPR011655 These proteins include those ascribed to M penetrans paralogue family 26 in [].
Probab=28.48 E-value=2.3e+02 Score=27.18 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=47.7
Q ss_pred hhcCCCCCccCCchhHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhccccchhhHHHhhhhHHHHHHHHhHHH-HH
Q 003454 402 AYGVARYQEANPAVYAVITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQKLGSFMEMLFGGRYVLLLMSLFS-IY 480 (819)
Q Consensus 402 ~Yg~P~Y~EidPt~~~~itFp~~FG~MfGD~G~Glll~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ryil~~~gi~s-i~ 480 (819)
....+++-|-++++..+..-...+-+|+-|. .+++.+++++.+..|.++++++... .-+ ...-+++..+|++= .+
T Consensus 40 ~~~~~~~~~~~~~~~~~~l~igil~i~~~~i-~~i~~~Il~Ivl~iKis~~k~~~~~-~~k--~~~~~iL~IIGi~i~~i 115 (130)
T PF07666_consen 40 SNNTSNNYEEESSMSIGNLVIGILLIIFSGI-FYIVNFILGIVLIIKISSLKNKHPE-FKK--VTVHKILLIIGIFISPI 115 (130)
T ss_pred hhccccccccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCcc-ccc--chhhhhhhhhhhHHhhH
Confidence 4445666666666666655555566677777 9999999999998876655443221 100 00123566666665 55
Q ss_pred HHHHh
Q 003454 481 CGLIY 485 (819)
Q Consensus 481 ~G~ly 485 (819)
+++++
T Consensus 116 ~~ii~ 120 (130)
T PF07666_consen 116 CSIID 120 (130)
T ss_pred HHHHH
Confidence 66554
No 48
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=28.38 E-value=2.1e+02 Score=32.98 Aligned_cols=77 Identities=18% Similarity=0.142 Sum_probs=45.1
Q ss_pred hhhhhHhHhhhHHHHH-HHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003454 57 QRTFVNQVKRCGEMSR-KLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFK 135 (819)
Q Consensus 57 qR~f~~~i~RceE~er-kL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~ 135 (819)
||.|.. .+..|+++ +|.-.+++.+..-... .....+.+.+|+.-+..|+.+.+.++..+++.+++.++.|..
T Consensus 333 qr~y~e--~~~~e~~qsqlen~k~~~e~~~~e~-----~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n 405 (493)
T KOG0804|consen 333 QRKYYE--QIMSEYEQSQLENQKQYYELLITEA-----DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREEN 405 (493)
T ss_pred HHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHH-----HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577766 44555555 4444444443211000 011234556666666777778888888888888888877776
Q ss_pred HHHHH
Q 003454 136 MVLQK 140 (819)
Q Consensus 136 ~vL~~ 140 (819)
..|.+
T Consensus 406 ~~l~k 410 (493)
T KOG0804|consen 406 KKLIK 410 (493)
T ss_pred HHHHh
Confidence 66665
No 49
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=28.30 E-value=4e+02 Score=25.59 Aligned_cols=69 Identities=14% Similarity=0.215 Sum_probs=43.8
Q ss_pred hhhhhhHhHhhhHHHHHHHHHHHHHHHhcCCCCCCCCC---CCCCCcHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003454 56 FQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPV---SGPDLDLEELEIQLAEHEHELIETNSNSEKL 124 (819)
Q Consensus 56 fqR~f~~~i~RceE~erkL~fl~~~i~k~~i~~~~~~~---~~~~~~l~elE~~l~~~e~el~e~~~n~~~L 124 (819)
--.+|..++.-=+.+|+++-.+.+.+++....+..+.. .-...+.+.|..-+.++|.+=+.+..++.++
T Consensus 6 WktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~ 77 (129)
T PF15372_consen 6 WKTRYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDY 77 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888889999999999999886544333211 1133445556666666665555555444443
No 50
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.19 E-value=1.4e+02 Score=29.75 Aligned_cols=53 Identities=13% Similarity=0.297 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003454 69 EMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNEL 131 (819)
Q Consensus 69 E~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l 131 (819)
++.+..++.+.+++.. ....++.++++++.++..+++...+.++++++-.+..
T Consensus 97 ~l~~t~s~veaEik~L----------~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~v 149 (201)
T KOG4603|consen 97 SLQQTCSYVEAEIKEL----------SSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHV 149 (201)
T ss_pred HHHHHHHHHHHHHHHH----------HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3445566666666432 1345788888888888888888887777776655544
No 51
>PRK00736 hypothetical protein; Provisional
Probab=26.88 E-value=3.3e+02 Score=22.98 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=5.7
Q ss_pred hhHHHHHHHHHHH
Q 003454 66 RCGEMSRKLRFFK 78 (819)
Q Consensus 66 RceE~erkL~fl~ 78 (819)
|++++|-++.|.+
T Consensus 6 Ri~~LE~klafqe 18 (68)
T PRK00736 6 RLTELEIRVAEQE 18 (68)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 52
>PHA02898 virion envelope protein; Provisional
Probab=26.68 E-value=2.8e+02 Score=24.72 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCccchhhhhhhHHHHHHHH
Q 003454 548 MSILLGVTQMNLGIILSYFDARFFGSSLDIRYQFVPQLIFLNSL 591 (819)
Q Consensus 548 ~SiiiGv~~m~~G~~l~~~n~~~~~~~~~~~~~~ip~~~fl~~~ 591 (819)
-.++.|++.+..+-+..++.--+.++..|-.+..+.-+.|..|.
T Consensus 13 ~vli~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii~FIlgi 56 (92)
T PHA02898 13 YVVAFGIILLIVACICAYIELSKSEKPADSALRSISIISFILAI 56 (92)
T ss_pred hHHHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHHHHHHHH
Confidence 46789999999999999999888776645444555555555544
No 53
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=26.64 E-value=1.7e+02 Score=26.94 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQTYNELL 132 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~ 132 (819)
..++++.++.++.+++.+.++.+.+++++.++.
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q 101 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQ 101 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777778888777777777766664
No 54
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=26.35 E-value=9.4e+02 Score=27.76 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003454 65 KRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLE 133 (819)
Q Consensus 65 ~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E 133 (819)
+|.+.+.+.|.-+++.+....-. ...-...+.++|+++++++.++.+....+++++++..++.-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~-----~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQ-----RAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 55666666665555555332100 00011234444555555555555555545555554444443
No 55
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.78 E-value=1.2e+02 Score=30.85 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=18.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003454 97 DLDLEELEIQLAEHEHELIETNSNSEKLRQTY 128 (819)
Q Consensus 97 ~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~ 128 (819)
..+++++++++++.+.++..+.++.+.+++.|
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555566666666666655555555555544
No 56
>PRK15028 cytochrome bd-II oxidase subunit 2; Provisional
Probab=24.45 E-value=5.1e+02 Score=29.50 Aligned_cols=66 Identities=11% Similarity=0.249 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhcccc----chhhHHHhhhhHHHHHHHHhHHHHHHHHHhcccc
Q 003454 419 ITFPFLFAVMFGDWGHGICLLLGALVLIARERKLGNQ----KLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFF 489 (819)
Q Consensus 419 itFp~~FG~MfGD~G~Glll~l~~~~l~~~~~~~~~~----~~~~~~~~~~~~ryil~~~gi~si~~G~lyg~fF 489 (819)
-.||..|+.+|...==-++++++|+.++--.-..+.| ..++.++..+ ..-.-+.++.+|...|.+.
T Consensus 73 AAFP~~Ya~lfS~lYlpl~l~L~~LIlRgvafEfR~k~~~~~wr~~Wd~~f-----~vgS~l~~f~~Gv~~g~~v 142 (378)
T PRK15028 73 AAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGL-----VIGSLVPPVVFGIAFGNLL 142 (378)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccCCChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 3699999999998887888888887765311111111 2244454322 2233456667788887765
No 57
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.44 E-value=1.2e+03 Score=31.20 Aligned_cols=155 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-------HHhhhc----CCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Q 003454 544 LKMKMSILLGVTQMNLGIILSY-------FDARFF----GSSLDIRYQFVPQLIFLNSLFGYLSLLIIIKWCTGSQADLY 612 (819)
Q Consensus 544 ~~m~~SiiiGv~~m~~G~~l~~-------~n~~~~----~~~~~~~~~~ip~~~fl~~~fgyl~~lii~kw~~~~~p~l~ 612 (819)
+.-.+.++++++-+++.+.|-- ||+... +++...+..++..+++ .+||++.+++.
T Consensus 22 L~E~~gIlLlllAlfL~lALiSYsPsDPSwS~sa~~~~V~Nl~GiVGA~LAD~L~--~LFGl~AYLLP------------ 87 (1355)
T PRK10263 22 LLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLF--FIFGVMAYTIP------------ 87 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccCCcccccCcccccccccchHHHHHHHHHH--HHHhHHHHHHH------------
Q ss_pred HHHHHHhcCCCCCCCccccccCchHHHHHHHHHHHHhhhhhccchhhHHhhhhhccccCccccccCCCccccCCCCCccc
Q 003454 613 HVMIYMFLSPTDDLGENELFWGQRPLQILLLLLATVAVPWMLFPKPFILRKLHTERFQGRTYGILGTSEMDLEVEPDSAR 692 (819)
Q Consensus 613 ~~~i~m~l~~~~~~~~~~l~~g~~~~~~~ll~~~~~~v~~ml~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (819)
+++.+.+. .+++.++...
T Consensus 88 ------------------------------~LL~~~a~--------~l~R~r~~~~------------------------ 105 (1355)
T PRK10263 88 ------------------------------VIIVGGCW--------FAWRHQSSDE------------------------ 105 (1355)
T ss_pred ------------------------------HHHHHHHH--------HHHhccccch------------------------
Q ss_pred cCCCCCchhHHHHHHHHHHhHhhhhhhhhhHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHH--
Q 003454 693 QHHEDFNFSEIFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFAT-- 770 (819)
Q Consensus 693 ~~~~~~~~~e~~i~q~i~tiE~~lg~isnt~SYlRL~AL~LAh~~La~vf~~~~~~~~~~~~~~~~~~~g~~i~~~~~-- 770 (819)
.+.++....-.+-+..+.|+...|+.....-.. ..+.+|+++.+++.++.-+++
T Consensus 106 ----------------------~l~~~~l~lRliGlLLLLLas~gLaa~~~~d~~--~~~gGGIIG~lLs~lL~~LfG~v 161 (1355)
T PRK10263 106 ----------------------YIDYFAVSLRIIGVLALILTSCGLAAINADDIW--YFASGGVIGSLLSTTLQPLLHSS 161 (1355)
T ss_pred ----------------------hhhhHHHHHHHHHHHHHHHHHHHHHHhcccccc--cccccchHHHHHHHHHHHHHhHH
Q ss_pred -HHHHHHHHHhHHHHhhhhhhhhhhccCc
Q 003454 771 -AFILLMMETLSAFLHALRLHWVEFQNKF 798 (819)
Q Consensus 771 -~~vll~me~L~aflH~LRL~~vEFf~KF 798 (819)
..+++++-.+.+.+=...+.|+.++.|+
T Consensus 162 Ga~LILLlllLIGLiLlTglSwlsIleri 190 (1355)
T PRK10263 162 GGTIALLCVWAAGLTLFTGWSWVTIAEKL 190 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHH
No 58
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=24.32 E-value=2e+02 Score=21.65 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYNEL 131 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l 131 (819)
.++++-+.+=++|.++++..+.+.++.+...+.
T Consensus 5 ~ieelkqll~rle~eirett~sl~ninksidq~ 37 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETTDSLRNINKSIDQY 37 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 456666666677777777766666655554444
No 59
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=23.79 E-value=66 Score=30.50 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=9.8
Q ss_pred HHHHHHHHhcchh
Q 003454 421 FPFLFAVMFGDWG 433 (819)
Q Consensus 421 Fp~~FG~MfGD~G 433 (819)
.-+.||+|.|=+|
T Consensus 67 ~~Ii~gv~aGvIg 79 (122)
T PF01102_consen 67 IGIIFGVMAGVIG 79 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHH
Confidence 5677888887776
No 60
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=23.78 E-value=2.2e+02 Score=24.58 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGG 143 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~~ 143 (819)
..++..+++++++++.+++++.++|+.+...+.....+=+.|++
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~Ar~ 69 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKIAKK 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 44566667777777777777777777777776655554444443
No 61
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=23.66 E-value=6.8e+02 Score=24.58 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=44.3
Q ss_pred hhhHhHhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003454 59 TFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNEL 131 (819)
Q Consensus 59 ~f~~~i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l 131 (819)
+...++-|.+|-.++|..+.+++..... |-..+++.+-..++....+|+.+.++.++-.+.|.+.
T Consensus 53 kVq~~LgrveEetkrLa~ireeLE~l~d--------P~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykea 117 (159)
T PF04949_consen 53 KVQAQLGRVEEETKRLAEIREELEVLAD--------PMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEA 117 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhcc--------chHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3445678899999999999998875432 3445677777777777777777766665544444333
No 62
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.26 E-value=1.5e+03 Score=28.15 Aligned_cols=16 Identities=6% Similarity=0.260 Sum_probs=9.0
Q ss_pred hhhHHHHHHHHhhcCc
Q 003454 249 EQARTKILKICEAFGA 264 (819)
Q Consensus 249 ~~~~~kv~kI~~~~~~ 264 (819)
+.+..|++++++..+.
T Consensus 610 e~L~~R~~~vl~~l~~ 625 (717)
T PF10168_consen 610 EKLMKRVDRVLQLLNS 625 (717)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3445566666666643
No 63
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=23.13 E-value=1.9e+02 Score=33.65 Aligned_cols=56 Identities=7% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhhhhHhHhhhHHHHHHHHHHHHHHH---hcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003454 57 QRTFVNQVKRCGEMSRKLRFFKEQIN---KAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQT 127 (819)
Q Consensus 57 qR~f~~~i~RceE~erkL~fl~~~i~---k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~ 127 (819)
+.....+=.+.+|+|++|.-++++++ + ...++|+.++++++|++++.++.+.+..+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~sa---------------q~~dle~KIkeLEaE~~~Lk~Ql~a~~~~ 126 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNK---------------QRGDDQRRIEKLGQDNAALAEQVKALGAN 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hhhhHHHHHHHHHHHHHHHHHHHHhhhcC
No 64
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.00 E-value=3.9e+02 Score=22.91 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQTYNELL 132 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~ 132 (819)
+++||..++++-..+..+...++.|++.-+.+.
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445555555444444444444444444444443
No 65
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=22.90 E-value=1.2e+03 Score=26.88 Aligned_cols=73 Identities=23% Similarity=0.263 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 003454 67 CGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLV 146 (819)
Q Consensus 67 ceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~~~l~ 146 (819)
+.-+|+.|.-+.+.++|+..+. +.- ..+=-+||..+++. .+|+++++-.+.=+.+ .+++..+..|++|..=++
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~--rnv---avek~~lerkl~ea-~rl~elreg~e~e~~r-kelE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQ--RNV---AVEKLDLERKLDEA-PRLSELREGVENETSR-KELEQLRVALEKAEKELE 326 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hch---hhhhhhHHHHHhhh-hhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3334666666667666653221 000 01112234444422 3456655544442222 466667777777765443
No 66
>PRK10869 recombination and repair protein; Provisional
Probab=22.73 E-value=3.4e+02 Score=32.53 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=25.9
Q ss_pred HhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHh
Q 003454 64 VKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNS 119 (819)
Q Consensus 64 i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~ 119 (819)
-.|.++++.+|..+.....|+|. +++++-+..+++++++.++.+
T Consensus 295 p~~l~~ie~Rl~~l~~L~rKyg~------------~~~~~~~~~~~l~~eL~~L~~ 338 (553)
T PRK10869 295 PNRLAELEQRLSKQISLARKHHV------------SPEELPQHHQQLLEEQQQLDD 338 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC------------CHHHHHHHHHHHHHHHHHhhC
Confidence 34567777777777777777663 355555555555555544443
No 67
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=22.51 E-value=1.8e+02 Score=27.09 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=13.4
Q ss_pred HHHHHHHHHhhhhHHHHH
Q 003454 723 ASYLRLWALSLAHSELST 740 (819)
Q Consensus 723 ~SYlRL~AL~LAh~~La~ 740 (819)
+-=.|.|||+|--+++.-
T Consensus 8 iN~~R~~al~lif~g~~v 25 (114)
T PF11023_consen 8 INKIRTFALSLIFIGMIV 25 (114)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345799999998776653
No 68
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=22.29 E-value=3.2e+02 Score=22.40 Aligned_cols=34 Identities=32% Similarity=0.351 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYNELL 132 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~ 132 (819)
.+.+||..++.++.+-.++...++.|......|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777776666666666666665555543
No 69
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=22.15 E-value=4.5e+02 Score=32.62 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hhhhh
Q 003454 107 LAEHEHELIETNSNSEKLRQTYNELLEFKMVLQK-AGGFL 145 (819)
Q Consensus 107 l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~-~~~~l 145 (819)
+++++++.++++++.++|.+++.++.+.+..|.+ ++..+
T Consensus 581 L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl 620 (717)
T PF10168_consen 581 LQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVL 620 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666666766666655554443 44333
No 70
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.93 E-value=2.4e+02 Score=25.57 Aligned_cols=66 Identities=14% Similarity=0.241 Sum_probs=0.0
Q ss_pred hhhhhHhHhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003454 57 QRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNEL 131 (819)
Q Consensus 57 qR~f~~~i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l 131 (819)
..+|.+.-+....+.+.+.-+.+.-.... |.-..++++|+++.++|+-..++.+-.++|+.++..+
T Consensus 34 ~~kY~~~~~~~~~l~~~~~~l~~k~~~l~---------~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 34 SLKYKKMKDIAAGLEKNLEDLNQKYEELQ---------PYLQQIDQIEEQVTELEQTVYELDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 71
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=21.87 E-value=2.1e+02 Score=25.56 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYNELL 132 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~ 132 (819)
-.+.|++..+.++.++..+.++.+.+.+++.++.
T Consensus 63 ~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~ 96 (106)
T PF01920_consen 63 AIEELEERIEKLEKEIKKLEKQLKYLEKKLKELK 96 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777778888877777777666654
No 72
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.28 E-value=3.7e+02 Score=28.06 Aligned_cols=19 Identities=11% Similarity=-0.169 Sum_probs=8.3
Q ss_pred HHHHhcccCceeeeecCCC
Q 003454 34 AVSYLGELGLLQFRDLNSD 52 (819)
Q Consensus 34 ~v~~Lgelg~Vqf~Dln~~ 52 (819)
++.+.+.-+..+=.+.|+.
T Consensus 62 svr~i~~~~~~~~~~~n~~ 80 (216)
T KOG1962|consen 62 SVRRIQKYVSEYGSMANPT 80 (216)
T ss_pred HHHHHHHhhhhhhcccCCc
Confidence 3444444444443344443
No 73
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=21.17 E-value=1.8e+02 Score=22.54 Aligned_cols=21 Identities=10% Similarity=0.395 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003454 100 LEELEIQLAEHEHELIETNSN 120 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n 120 (819)
-|.+|+.++.+..++.++.+.
T Consensus 14 ~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 14 YDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp -THHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHHH
Confidence 344566666665555555443
No 74
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=20.76 E-value=50 Score=16.10 Aligned_cols=7 Identities=57% Similarity=1.445 Sum_probs=4.5
Q ss_pred CCCCCcC
Q 003454 521 EPYPFGV 527 (819)
Q Consensus 521 ~~y~fgi 527 (819)
+||.||+
T Consensus 2 gpy~fgl 8 (8)
T PF08261_consen 2 GPYSFGL 8 (8)
T ss_pred CcccccC
Confidence 3777774
No 75
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=20.54 E-value=5.8e+02 Score=22.29 Aligned_cols=31 Identities=10% Similarity=0.238 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003454 280 IREVLSRLSELEATLDAGIRHRNKALTSIGF 310 (819)
Q Consensus 280 ~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~ 310 (819)
++.+++++..+.++..++.++.+++++++..
T Consensus 35 i~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 35 IDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 76
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.46 E-value=5e+02 Score=28.96 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=23.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYNE 130 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~ 130 (819)
...+|++..+.+|+|+.++++|.+-|.+...+
T Consensus 247 G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 247 GKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35667777788888888888888887775554
No 77
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=20.19 E-value=3.4e+02 Score=29.87 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=32.4
Q ss_pred cHHHHHHHhcccCceeeeecCCCCCchhhhhhHhHhhhHHHHHHHHHHHHHHHh
Q 003454 30 SAQRAVSYLGELGLLQFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINK 83 (819)
Q Consensus 30 ~a~~~v~~Lgelg~Vqf~Dln~~~~~fqR~f~~~i~RceE~erkL~fl~~~i~k 83 (819)
.-+++.+.|.++..+|.++.-.+ .......+-+.+++++++++-++..+.+
T Consensus 56 ~ld~~~~kl~~Ms~~ql~~~~~k---~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 56 SLDELKEKLKEMSSTQLRANIAK---AEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999998886432 2233444445566666666666666543
No 78
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=20.18 E-value=3.4e+02 Score=27.03 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=25.2
Q ss_pred HhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHH
Q 003454 64 VKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSE 122 (819)
Q Consensus 64 i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~ 122 (819)
+.-++|+.++++-|+++.++-.- .-....++++.+.+.+.+++++.+.++
T Consensus 110 l~~L~e~snki~kLe~~~k~L~d---------~Iv~~~~i~e~IKd~de~L~~I~d~iK 159 (163)
T PF03233_consen 110 LPTLEEISNKIRKLETEVKKLKD---------NIVTEKLIEELIKDFDERLKEIRDKIK 159 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhh---------hccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666555543210 112344556666666666666655443
No 79
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=20.05 E-value=3.2e+02 Score=25.26 Aligned_cols=35 Identities=29% Similarity=0.308 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003454 105 IQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQ 139 (819)
Q Consensus 105 ~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~ 139 (819)
+.+.++++++.++.++...|++...++.|.-+.|+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~ 42 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLR 42 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444443
No 80
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=20.03 E-value=4.9e+02 Score=21.90 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKM 136 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~ 136 (819)
+..||+.++++-....++..++..|+++...+...+.
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~ 38 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERA 38 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888887777777777777777777776664443
Done!