Query 003454
Match_columns 819
No_of_seqs 230 out of 950
Neff 7.2
Searched_HMMs 29240
Date Tue Mar 26 01:46:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 100.0 8.9E-46 3.1E-50 411.0 31.7 342 12-412 7-357 (357)
2 2nvj_A 25MER peptide from vacu 99.2 5.2E-13 1.8E-17 85.7 -2.2 26 713-738 1-26 (26)
3 2jtw_A Transmembrane helix 7 o 98.9 7.3E-10 2.5E-14 70.7 2.6 22 719-740 2-23 (26)
4 1kd8_A GABH AIV, GCN4 acid bas 58.9 18 0.00063 25.2 4.8 31 99-129 2-32 (36)
5 1kd8_B GABH BLL, GCN4 acid bas 58.4 23 0.00079 24.7 5.2 31 99-129 2-32 (36)
6 3rrk_A V-type ATPase 116 kDa s 54.6 25 0.00085 37.7 7.9 91 99-223 227-318 (357)
7 3oja_B Anopheles plasmodium-re 53.5 26 0.00087 40.3 8.3 32 100-131 539-570 (597)
8 3c3f_A Alpha/beta peptide with 51.6 23 0.00079 24.4 4.2 29 99-127 2-30 (34)
9 3okq_A BUD site selection prot 48.1 1.1E+02 0.0039 28.2 9.8 71 63-140 26-98 (141)
10 2wq1_A General control protein 44.9 46 0.0016 22.9 4.8 27 100-126 2-28 (33)
11 3c3g_A Alpha/beta peptide with 44.0 36 0.0012 23.3 4.2 27 100-126 2-28 (33)
12 1uo4_A General control protein 43.7 32 0.0011 23.8 4.0 27 100-126 3-29 (34)
13 3m48_A General control protein 43.6 27 0.00091 24.1 3.6 27 100-126 2-28 (33)
14 2xv5_A Lamin-A/C; structural p 41.4 1.5E+02 0.005 24.4 8.6 50 279-329 6-55 (74)
15 2oxj_A Hybrid alpha/beta pepti 41.0 56 0.0019 22.6 4.8 28 99-126 2-29 (34)
16 2akf_A Coronin-1A; coiled coil 39.2 27 0.00093 23.2 3.0 25 109-133 3-27 (32)
17 2r2v_A GCN4 leucine zipper; co 38.4 65 0.0022 22.3 4.8 28 99-126 2-29 (34)
18 3nmd_A CGMP dependent protein 35.2 1.1E+02 0.0037 25.1 6.7 37 98-134 19-55 (72)
19 2oqq_A Transcription factor HY 34.5 1.1E+02 0.0039 22.1 5.8 28 99-126 4-31 (42)
20 2bni_A General control protein 33.8 46 0.0016 23.0 3.5 27 100-126 3-29 (34)
21 1gk6_A Vimentin; intermediate 33.4 1.3E+02 0.0043 23.5 6.8 47 282-329 4-50 (59)
22 2oqq_A Transcription factor HY 32.2 1.5E+02 0.005 21.6 6.1 34 107-140 5-38 (42)
23 2hy6_A General control protein 30.7 66 0.0023 22.2 3.9 27 100-126 3-29 (34)
24 2lw1_A ABC transporter ATP-bin 28.5 2.2E+02 0.0074 24.0 8.0 28 108-135 59-86 (89)
25 3efg_A Protein SLYX homolog; x 27.3 1.1E+02 0.0037 25.4 5.7 13 66-78 15-27 (78)
26 1u7l_A Vacuolar ATP synthase s 27.2 6.3E+02 0.021 27.4 28.6 158 188-364 189-349 (392)
27 1x8y_A Lamin A/C; structural p 26.9 2.8E+02 0.0096 23.2 9.3 51 278-329 28-78 (86)
28 2l5g_B Putative uncharacterize 26.6 1.5E+02 0.0051 21.6 5.4 32 102-133 6-37 (42)
29 1ykh_B RNA polymerase II holoe 26.0 3E+02 0.01 25.1 9.0 52 253-311 71-125 (132)
30 3tnu_A Keratin, type I cytoske 25.8 1.5E+02 0.0052 26.9 7.0 39 100-138 79-117 (131)
31 1yke_B RNA polymerase II holoe 25.8 2.8E+02 0.0096 25.9 8.9 51 253-310 71-124 (151)
32 3ghg_A Fibrinogen alpha chain; 25.7 2.4E+02 0.0081 31.7 9.5 77 281-364 113-190 (562)
33 2wuj_A Septum site-determining 25.2 78 0.0027 24.6 4.1 37 96-132 18-54 (57)
34 1gk4_A Vimentin; intermediate 25.1 3E+02 0.01 22.9 9.3 51 278-329 26-76 (84)
35 3hnw_A Uncharacterized protein 24.6 1.7E+02 0.006 26.9 7.2 19 22-42 19-37 (138)
36 1t3j_A Mitofusin 1; coiled coi 24.4 2.1E+02 0.0071 24.8 7.0 13 98-110 36-48 (96)
37 2b9c_A Striated-muscle alpha t 24.3 96 0.0033 29.0 5.4 16 66-81 74-89 (147)
38 2z5i_A TM, general control pro 23.9 1.2E+02 0.0039 23.2 4.8 26 101-126 15-40 (52)
39 1deq_A Fibrinogen (alpha chain 23.9 4.6E+02 0.016 28.2 11.0 86 271-364 106-193 (390)
40 1t2k_D Cyclic-AMP-dependent tr 23.4 1.7E+02 0.0057 22.8 5.9 33 99-131 23-55 (61)
41 2ns1_B Nitrogen regulatory pro 22.3 48 0.0016 29.5 2.8 28 16-43 2-29 (116)
42 1fxk_C Protein (prefoldin); ar 22.1 4.2E+02 0.014 23.6 16.3 43 99-141 2-44 (133)
43 2wt7_A Proto-oncogene protein 22.0 1.8E+02 0.0063 22.8 5.9 32 100-131 25-56 (63)
44 3twe_A Alpha4H; unknown functi 21.9 1.5E+02 0.0051 18.8 4.0 10 109-118 5-14 (27)
45 2yy0_A C-MYC-binding protein; 21.5 99 0.0034 23.7 4.0 34 95-128 16-49 (53)
46 2xv5_A Lamin-A/C; structural p 21.3 2.5E+02 0.0086 23.0 6.7 41 99-139 6-46 (74)
47 1lq7_A Alpha3W; three helix bu 21.3 2.2E+02 0.0075 21.6 5.7 16 68-83 5-20 (67)
48 2zqm_A Prefoldin beta subunit 20.8 2E+02 0.0068 25.1 6.7 33 100-132 72-104 (117)
49 3tnu_B Keratin, type II cytosk 20.1 1.8E+02 0.0061 26.3 6.2 80 45-139 37-116 (129)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=100.00 E-value=8.9e-46 Score=411.05 Aligned_cols=342 Identities=14% Similarity=0.112 Sum_probs=247.5
Q ss_pred ccccccccceEEEEcccccHHHHHHHhcccCceeeeecCCCCCchh--hhhh-HhHhhhHHHHHHHHHHHHHHHhcCCCC
Q 003454 12 DLMRSEKMMFVQLIIPVESAQRAVSYLGELGLLQFRDLNSDKSPFQ--RTFV-NQVKRCGEMSRKLRFFKEQINKAGLQS 88 (819)
Q Consensus 12 slfRSe~M~~~~Li~p~e~a~~~v~~Lgelg~Vqf~Dln~~~~~fq--R~f~-~~i~RceE~erkL~fl~~~i~k~~i~~ 88 (819)
-|+|+++|++++|++|++.+++++++||++|+|||+|++++.+.|+ +++. +++++|+++.++++++.+++.+...+.
T Consensus 7 ~~~~pekM~kv~l~~~~~~~~~vl~~L~~lg~vhi~d~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~L~~~~~~~ 86 (357)
T 3rrk_A 7 TIDDDDKMEKLIVAGPKRLARELLAELQKAGVVHIDPLRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLATVPS 86 (357)
T ss_dssp -------CEEEEEEECGGGHHHHHHHHHHHTCEEEEEECGGGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred CCCChhheEEEEEEeEHHHHHHHHHHHHHcCcEEEEeccccccccccCCccchHHHhHHHHHHHHHHHHHHHhccccccc
Confidence 4799999999999999999999999999999999999999888888 7776 689999999999999999997654221
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCcchhhhhhhhhhcccCc
Q 003454 89 SVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMND 168 (819)
Q Consensus 89 ~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 168 (819)
. .+...+++++++.+++++++++++.++.++|+++..++.+.+.+++....+-. +
T Consensus 87 -~---~~~~~~~~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~~~~l~~L~p~~~-----------------~---- 141 (357)
T 3rrk_A 87 -S---KPFTGSLEEAEAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAEKLAALAH-----------------G---- 141 (357)
T ss_dssp -S---SCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------------T----
T ss_pred -c---cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhc-----------------c----
Confidence 0 12234599999999999999999999999999999999988777766443310 1
Q ss_pred ccccccchhhhhccCCCCCCcceEEEeEE-ecccHHHHHHHHHHhhCCcEEeeecCCCccccCcccccccceEEEEEEEe
Q 003454 169 YADTASLLEQDIRAGPSNQSGLRFISGII-CKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIFVVFFS 247 (819)
Q Consensus 169 ~~~~~ll~~~e~~~~~~~~~~~~~i~G~I-~~~~~~~f~~~l~R~~rgn~~~~~~~i~~~~~~~~~~~~~~k~vfvv~~~ 247 (819)
.+ ....+++++|+| ++++..+|++.|+|++++..+... ++...+++++|++
T Consensus 142 ld---------------~~~~~g~~~g~ip~~~~~~~~~~~l~~~~~~~~~~~~------------~~~~~~~~~vv~~- 193 (357)
T 3rrk_A 142 LD---------------ESPRLGVIPFLVAKPEELEAVRKALQEALADRFVLEA------------EPLENQLAALVVV- 193 (357)
T ss_dssp TT---------------TCTTEEEEEEEESCHHHHHHHHHHHHHHHTTSCEEEE------------EECSSSEEEEEEE-
T ss_pred CC---------------ccceeeeeeEEecChhhHHHHHHHHHHhcCCeEEEEe------------ecCCCcEEEEEEE-
Confidence 01 123689999999 799999999999999998433211 1223455666665
Q ss_pred ChhhHHHHHHHHhhcCceEeeCCCChh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003454 248 GEQARTKILKICEAFGANCYPVSEDLT--KQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAV 325 (819)
Q Consensus 248 ~~~~~~kv~kI~~~~~~~~~~~p~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~i 325 (819)
++...+++++||+++||+++++|+..+ .+.+.++++++++++++++++++++++.++.+.....+..|...+.+++++
T Consensus 194 ~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~ 273 (357)
T 3rrk_A 194 KRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVAR 273 (357)
T ss_dssp EGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788999999999999999998777 999999999999999999999999999999999889999999999999999
Q ss_pred HHHhhcccccccCceEEEEEeeecccHHHHHHHHHhhhccCCCceeeEeeecCCC---CCCCccccccchhhHHHHHHHh
Q 003454 326 YDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVLQRATFDSNSQVGTIFHVMDSM---ESPPTYFRTNRFTNAFQEIVDA 402 (819)
Q Consensus 326 y~~ln~~~~~~t~~~~~~~gWvP~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~---~~pPt~l~nn~~~~pFe~iv~~ 402 (819)
|+++|++ +.|+++++++||||++++++++++|++ +. ..+.+.+.+++++ +.|||+++||+|++|||.||+|
T Consensus 274 ~~~~~~~--~~~~~~~~~~gWvp~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe~iv~~ 347 (357)
T 3rrk_A 274 YKAVADM--AAGKYGAALMGWVPQKAKGKVEEALGR-LR---DQIVYTFEPVDEHHESHQVPVTLENPAWAKPFELLHGF 347 (357)
T ss_dssp HHHHHHH--HTTCCSEEEEEEECTTTHHHHHHTCCS-SC---EEEEC---------------------------------
T ss_pred HHHHHhh--cccCcEEEEEEEeeHHHHHHHHHHHHh-cC---CceEEEEecCCccccCCCcCEeccCCchhhHHHHHHHh
Confidence 9999964 579999999999999999999999976 32 3466667777666 5899999999999999999999
Q ss_pred hcCCCCCccC
Q 003454 403 YGVARYQEAN 412 (819)
Q Consensus 403 Yg~P~Y~Eid 412 (819)
||+|+|+|+|
T Consensus 348 Yg~p~Y~EiD 357 (357)
T 3rrk_A 348 LNTPAYGSHD 357 (357)
T ss_dssp ----------
T ss_pred cCCCCCCCCC
Confidence 9999999998
No 2
>2nvj_A 25MER peptide from vacuolar ATP synthase subunit A, vacuolar isoform; ALFA helix, 3,10 helix, PI helix, hydrolase; NMR {Synthetic}
Probab=99.20 E-value=5.2e-13 Score=85.72 Aligned_cols=26 Identities=73% Similarity=1.120 Sum_probs=23.8
Q ss_pred HhhhhhhhhhHHHHHHHHHhhhhHHH
Q 003454 713 EFVLGAVSNTASYLRLWALSLAHSEL 738 (819)
Q Consensus 713 E~~lg~isnt~SYlRL~AL~LAh~~L 738 (819)
|+++|++|||+||+|||||||||++|
T Consensus 1 e~~l~~is~tasylRlwaLsLah~~l 26 (26)
T 2nvj_A 1 EFCLNCVSHTASYLRLWALSLAHAQX 26 (26)
T ss_dssp CCSSSTTTTTCHHHHGGGSCSSCCC-
T ss_pred CeEEEEeCCchHHHHHHhhhcccccC
Confidence 57999999999999999999999875
No 3
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=98.88 E-value=7.3e-10 Score=70.67 Aligned_cols=22 Identities=77% Similarity=1.135 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHhhhhHHHHH
Q 003454 719 VSNTASYLRLWALSLAHSELST 740 (819)
Q Consensus 719 isnt~SYlRL~AL~LAh~~La~ 740 (819)
+|||+||+|||||||||++++.
T Consensus 2 ~s~tasylRlwaLsLaH~~ls~ 23 (26)
T 2jtw_A 2 KSHTASYLRLWALSLAHAQLSS 23 (26)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcchhHHHHHHhhhhHHHHhh
Confidence 6999999999999999999873
No 4
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.88 E-value=18 Score=25.24 Aligned_cols=31 Identities=19% Similarity=0.364 Sum_probs=24.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYN 129 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~ 129 (819)
.+++||..++++.++-.++.++..+|++-+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3678999999998888888888888777544
No 5
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=58.39 E-value=23 Score=24.74 Aligned_cols=31 Identities=13% Similarity=0.312 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYN 129 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~ 129 (819)
.+++||..++++-++-.++.++..+|++-+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3788999898888888888888888776543
No 6
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=54.56 E-value=25 Score=37.74 Aligned_cols=91 Identities=11% Similarity=0.112 Sum_probs=50.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHhhhhhhccCCCcchhhhhhhhhhcccCcccccccchh
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQT-YNELLEFKMVLQKAGGFLVSSNGHAVAEETELSENVYSMNDYADTASLLE 177 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~-~~~l~E~~~vL~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~ 177 (819)
.+.+++++++++++++.++.++..++.+. ...+..+...+..-...++. ++ .+.
T Consensus 227 ~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~-----------~~-------------~~~- 281 (357)
T 3rrk_A 227 AAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKA-----------VA-------------DMA- 281 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-------------HHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH-------------hhc-
Confidence 46677777777777777776666666655 33333333333321111100 00 000
Q ss_pred hhhccCCCCCCcceEEEeEEecccHHHHHHHHHHhhCCcEEeeecC
Q 003454 178 QDIRAGPSNQSGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAP 223 (819)
Q Consensus 178 ~e~~~~~~~~~~~~~i~G~I~~~~~~~f~~~l~R~~rgn~~~~~~~ 223 (819)
...++-.+.|.||.++..++++.|.+ +.+.+++...+
T Consensus 282 --------~~~~~~~~~gWvp~~~~~~~~~~l~~-~~~~~~~~~~~ 318 (357)
T 3rrk_A 282 --------AGKYGAALMGWVPQKAKGKVEEALGR-LRDQIVYTFEP 318 (357)
T ss_dssp --------TTCCSEEEEEEECTTTHHHHHHTCCS-SCEEEEC----
T ss_pred --------ccCcEEEEEEEeeHHHHHHHHHHHHh-cCCceEEEEec
Confidence 12246678899999999999998866 55555544433
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.53 E-value=26 Score=40.26 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQTYNEL 131 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l 131 (819)
+++++++.++++.++++..+..+.++++...+
T Consensus 539 ~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 539 TEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44455555555555555555555555444444
No 8
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=51.62 E-value=23 Score=24.39 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=21.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQT 127 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~ 127 (819)
.+++||..++++-++-.++.++..+|++-
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 37788888888877777777777776653
No 9
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=48.08 E-value=1.1e+02 Score=28.23 Aligned_cols=71 Identities=8% Similarity=0.238 Sum_probs=52.4
Q ss_pred hHhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHH
Q 003454 63 QVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELL--EFKMVLQK 140 (819)
Q Consensus 63 ~i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~--E~~~vL~~ 140 (819)
-+.|.|+++..+.-|..-+.+.|+. |.+..++.+.++++.+..+|+.+.+-+++.+-.+...- |+..|.+.
T Consensus 26 LvtkVDDLQD~VE~LRkDV~~Rgvr-------P~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceE 98 (141)
T 3okq_A 26 LLSKVDDLQDVIEIMRKDVAERRSQ-------PAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEE 98 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 3666677766676776666666755 56678999999999999999999988888887777763 45555543
No 10
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.93 E-value=46 Score=22.85 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~ 126 (819)
+++||..++++-++-.++.++..+|++
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678888888777766666666666554
No 11
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=44.02 E-value=36 Score=23.34 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~ 126 (819)
+++||..++++-++=.++.++..+|++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 677888777776666666666666554
No 12
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=43.72 E-value=32 Score=23.81 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~ 126 (819)
|.+||+.++++-++-.++.++..+|++
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 678888888887777777776666655
No 13
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=43.56 E-value=27 Score=24.05 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~ 126 (819)
+++||+.++++-.+-.++.++..+|++
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567888888777766666666666655
No 14
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=41.36 E-value=1.5e+02 Score=24.39 Aligned_cols=50 Identities=16% Similarity=0.014 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003454 279 IIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTL 329 (819)
Q Consensus 279 ~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~iy~~l 329 (819)
...+.+..|.+++.++.+.+.+....+...+..+ ..+..+..|.+.|..|
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~Ll-niKl~Le~EIatYRkL 55 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL-DIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3456667777777777777766666666554433 3455667788888765
No 15
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=41.04 E-value=56 Score=22.57 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~ 126 (819)
.+++||..++++-.+=.++.++.++|++
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3677888777776666666666666554
No 16
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=39.16 E-value=27 Score=23.21 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q 003454 109 EHEHELIETNSNSEKLRQTYNELLE 133 (819)
Q Consensus 109 ~~e~el~e~~~n~~~L~~~~~~l~E 133 (819)
++|++++.++.-.++|++++..+++
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666665543
No 17
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=38.42 E-value=65 Score=22.30 Aligned_cols=28 Identities=14% Similarity=0.270 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~ 126 (819)
.+.++|..++++-++...+.++..+|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3677888777776666666666655554
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=35.18 E-value=1.1e+02 Score=25.09 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=26.4
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 003454 98 LDLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEF 134 (819)
Q Consensus 98 ~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~ 134 (819)
-++.+|+..+.+..+|+++...-++.|++.+.+..+.
T Consensus 19 gti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~e 55 (72)
T 3nmd_A 19 GSLRDLQYALQEKIEELRQRDALIDELELELDQKDEL 55 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888888777777777666666666665543
No 19
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=34.49 E-value=1.1e+02 Score=22.15 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~ 126 (819)
.+++||+...+++....++++.+..|+.
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~ 31 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQN 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776666666655555443
No 20
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.77 E-value=46 Score=23.01 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~ 126 (819)
+++||..++++-++=.++.++..+|++
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 567788777776666666666666554
No 21
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=33.42 E-value=1.3e+02 Score=23.51 Aligned_cols=47 Identities=17% Similarity=0.072 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003454 282 EVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTL 329 (819)
Q Consensus 282 ~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~iy~~l 329 (819)
+.+..|.+++.++.+.+.+....+...+..+ ..+..+..|.+.|..|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~Ll-niK~~Le~EIatYRkL 50 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLL-NVKMALDIEIATYRKL 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHH
Confidence 4455566666666666555555555543333 3345566777878755
No 22
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=32.16 E-value=1.5e+02 Score=21.61 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 003454 107 LAEHEHELIETNSNSEKLRQTYNELLEFKMVLQK 140 (819)
Q Consensus 107 l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~ 140 (819)
+.++|++.+++......|.++...++..-+.|++
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4567777777777777777777777655555554
No 23
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=30.65 E-value=66 Score=22.22 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~ 126 (819)
+++||..++++-++=.++.++..+|++
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567788777776666666666666555
No 24
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.45 E-value=2.2e+02 Score=23.96 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 003454 108 AEHEHELIETNSNSEKLRQTYNELLEFK 135 (819)
Q Consensus 108 ~~~e~el~e~~~n~~~L~~~~~~l~E~~ 135 (819)
..+..++.++.+.++.+.+++.+|.+++
T Consensus 59 ~~l~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 59 QKVLADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444456666677777788887776554
No 25
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.31 E-value=1.1e+02 Score=25.43 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHH
Q 003454 66 RCGEMSRKLRFFK 78 (819)
Q Consensus 66 RceE~erkL~fl~ 78 (819)
|++++|-++.|.+
T Consensus 15 Ri~~LE~klAfqE 27 (78)
T 3efg_A 15 RLVELETRLSFQE 27 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 26
>1u7l_A Vacuolar ATP synthase subunit C; hydrolase, structural protein; HET: TLA; 1.75A {Saccharomyces cerevisiae} SCOP: e.57.1.1
Probab=27.22 E-value=6.3e+02 Score=27.38 Aligned_cols=158 Identities=11% Similarity=0.029 Sum_probs=79.7
Q ss_pred CcceEEEeEEecccHHHHHHHHHHhhCCcEEeeecCCCccccCcccccccceEEE-EEEEeChhhHHHHHHHHhhcCceE
Q 003454 188 SGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIF-VVFFSGEQARTKILKICEAFGANC 266 (819)
Q Consensus 188 ~~~~~i~G~I~~~~~~~f~~~l~R~~rgn~~~~~~~i~~~~~~~~~~~~~~k~vf-vv~~~~~~~~~kv~kI~~~~~~~~ 266 (819)
-++..+.=+||+.....|.+.-.+.+.-.+ |.+. .-+..+. +...| |+.| ++..++.+.-|+..+|..
T Consensus 189 EyL~TllVvVPk~~~~dwl~~YEtL~~~VV-------PrSs-~~i~~D~-ey~L~~VtlF--kk~~~eF~~~~Re~kf~v 257 (392)
T 1u7l_A 189 EHLTTVLVAVPKSLKSDFEKSYETLSKNVV-------PASA-SVIAEDA-EYVLFNVHLF--KKNVQEFTTAAREKKFIP 257 (392)
T ss_dssp SSEEEEEEEEEGGGHHHHHHHGGGSSTTBC-------TTCC-EEEEECS-SEEEEEEEEE--GGGHHHHHHHHHHTTCEE
T ss_pred ccceEEEEEEeCccHHHHHHHHhhcCCCcc-------CChh-hhhhcCC-CceEEEEEEE--hhhHHHHHHHHHHcCCcc
Confidence 367777889999999999987654432111 1110 0112222 33333 3444 455678888899988888
Q ss_pred eeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHhhcccccccCceEEEE
Q 003454 267 YPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKAL-TSIGFHLTKWMNMVRREKA-VYDTLNMLNFDVTKKCLVGE 344 (819)
Q Consensus 267 ~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l-~~i~~~l~~~~~~~~kek~-iy~~ln~~~~~~t~~~~~~~ 344 (819)
-++--+++...+ .++++++++.+-++......+.. ....+....|.- +.--+. +...| +++..-++..+-
T Consensus 258 RdF~y~ee~~~~----~~~e~~~l~~~~~~~~~~L~r~~~~~fse~f~awiH-iKalRvFVESVL---RYGLP~~F~a~l 329 (392)
T 1u7l_A 258 REFNYSEELIDQ----LKKEHDSAASLEQSLRVQLVRLAKTAYVDVFINWFH-IKALRVYVESVL---RYGLPPHFNIKI 329 (392)
T ss_dssp ECCCCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHCSSCCEEEEE
T ss_pred ccCcCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHhhhhhhh---hcCCCCcceEEE
Confidence 777555544332 23333333333222222222211 222333444431 111111 22333 344444443333
Q ss_pred EeeecccHHHHHHHHHhhhc
Q 003454 345 GWCPIFAKAQIQEVLQRATF 364 (819)
Q Consensus 345 gWvP~~~~~~l~~~l~~~~~ 364 (819)
-..+.+...++++.|.+.-.
T Consensus 330 i~p~~k~~kKlr~~L~~~f~ 349 (392)
T 1u7l_A 330 IAVPPKNLSKCKSELIDAFG 349 (392)
T ss_dssp EEECTTCHHHHHHHHHHHHG
T ss_pred EEeCCccHHHHHHHHHHHhc
Confidence 34578889999999987543
No 27
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=26.88 E-value=2.8e+02 Score=23.22 Aligned_cols=51 Identities=16% Similarity=0.024 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003454 278 QIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTL 329 (819)
Q Consensus 278 ~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~iy~~l 329 (819)
..+++++..|.+++.++.+++.+....+......+ ..+..+..|.+.|..|
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~Ll-nvK~~Le~EIatYRkL 78 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELL-DIKLALDMEIHAYRKL 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHH
Confidence 34556666666677777666666665555554333 3355566777777654
No 28
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.58 E-value=1.5e+02 Score=21.59 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 003454 102 ELEIQLAEHEHELIETNSNSEKLRQTYNELLE 133 (819)
Q Consensus 102 elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E 133 (819)
+|-+.++++..|+....+.+..|++++.+|.+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555543
No 29
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.04 E-value=3e+02 Score=25.07 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCceEeeCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003454 253 TKILKICEAFGANCYPVSE---DLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFH 311 (819)
Q Consensus 253 ~kv~kI~~~~~~~~~~~p~---~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~ 311 (819)
..|..+.+++ |+ .+....+.+.+++++.++.++++++..++...+++.+...
T Consensus 71 kqIe~LIdsL-------P~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 71 RQINKLIDSL-------PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHS-------TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666665 44 3445556677777777777777766666666666555443
No 30
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=25.83 E-value=1.5e+02 Score=26.87 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVL 138 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL 138 (819)
+.++...+..++.++.++.....+....|.+|...|--|
T Consensus 79 l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~L 117 (131)
T 3tnu_A 79 LAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRL 117 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666665555555555554444333
No 31
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=25.77 E-value=2.8e+02 Score=25.91 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=29.5
Q ss_pred HHHHHHHhhcCceEeeCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003454 253 TKILKICEAFGANCYPVSE---DLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGF 310 (819)
Q Consensus 253 ~kv~kI~~~~~~~~~~~p~---~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~ 310 (819)
..|..+.+++ |+ .+....+.+.+++++.++.++++++..++.+.+++.+..
T Consensus 71 kqIe~LIdsL-------Pg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 71 RQINKLIDSL-------PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHC-------TTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666665 44 344555566676666666666666655555555555443
No 32
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.74 E-value=2.4e+02 Score=31.71 Aligned_cols=77 Identities=10% Similarity=0.049 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccccCceEEEEEeeecccHHHHHHHH
Q 003454 281 REVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMV-RREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKAQIQEVL 359 (819)
Q Consensus 281 ~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~-~kek~iy~~ln~~~~~~t~~~~~~~gWvP~~~~~~l~~~l 359 (819)
.+++++|+.|+.++....+.++.+... ++..+..+ +-|..|-..+..|+-.=++.. +==|..++.+.+++.|
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsn----Ledq~~kIQRLEvDIdiqirsCKgsCsr~~---~~~vd~~sY~~~QKQL 185 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKN----VRAQLVDMKRLEVDIDIKIRSCRGSCSRAL---AREVDLKDYEDQQKQL 185 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHGGGTBSCCC---CCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccccccchh---eeecchHHHHHHHHHH
Confidence 456666666666655444333222222 22222111 224445555555531111111 2226778889999999
Q ss_pred Hhhhc
Q 003454 360 QRATF 364 (819)
Q Consensus 360 ~~~~~ 364 (819)
+++..
T Consensus 186 eQv~a 190 (562)
T 3ghg_A 186 EQVIA 190 (562)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 88654
No 33
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=25.16 E-value=78 Score=24.56 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003454 96 PDLDLEELEIQLAEHEHELIETNSNSEKLRQTYNELL 132 (819)
Q Consensus 96 ~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~ 132 (819)
.-++-+++++-++++..++..+.++++.|+++...+.
T Consensus 18 rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 18 RGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp TEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888988888888888888888888888776664
No 34
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=25.12 E-value=3e+02 Score=22.90 Aligned_cols=51 Identities=14% Similarity=0.059 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003454 278 QIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMVRREKAVYDTL 329 (819)
Q Consensus 278 ~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~~kek~iy~~l 329 (819)
..+++.+..|.+++.++.+++.+....+......+ ..+..+..|.+.|..|
T Consensus 26 ~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll-nvK~~Ld~EIatYRkL 76 (84)
T 1gk4_A 26 VEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLL-NVKMALDIEIATYRKL 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHH
Confidence 34566666777777777777666666665554433 3355567777888765
No 35
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.62 E-value=1.7e+02 Score=26.90 Aligned_cols=19 Identities=11% Similarity=-0.087 Sum_probs=9.1
Q ss_pred EEEEcccccHHHHHHHhcccC
Q 003454 22 VQLIIPVESAQRAVSYLGELG 42 (819)
Q Consensus 22 ~~Li~p~e~a~~~v~~Lgelg 42 (819)
|+|..|. . .+.+..+...=
T Consensus 19 Y~i~g~e-~-ee~L~~vA~~v 37 (138)
T 3hnw_A 19 IKLGGYE-S-EEYLQRVASYI 37 (138)
T ss_dssp EEECSCS-C-HHHHHHHHHHH
T ss_pred EEecCCC-c-HHHHHHHHHHH
Confidence 5566653 2 34555554433
No 36
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.40 E-value=2.1e+02 Score=24.77 Aligned_cols=13 Identities=15% Similarity=0.056 Sum_probs=6.3
Q ss_pred CcHHHHHHHHHHH
Q 003454 98 LDLEELEIQLAEH 110 (819)
Q Consensus 98 ~~l~elE~~l~~~ 110 (819)
.++..|...+++.
T Consensus 36 ~tfarLc~~Vd~t 48 (96)
T 1t3j_A 36 TTFARLCQQVDMT 48 (96)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555554433
No 37
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=24.30 E-value=96 Score=29.01 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 003454 66 RCGEMSRKLRFFKEQI 81 (819)
Q Consensus 66 RceE~erkL~fl~~~i 81 (819)
+++|+.|||..++..+
T Consensus 74 KyeE~~RKl~~~E~dL 89 (147)
T 2b9c_A 74 KYEEVARKLVIIESDL 89 (147)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 38
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=23.93 E-value=1.2e+02 Score=23.24 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Q 003454 101 EELEIQLAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 101 ~elE~~l~~~e~el~e~~~n~~~L~~ 126 (819)
.+||+.++++|.++..-..+...+.+
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~ 40 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISE 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444444333333333
No 39
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.87 E-value=4.6e+02 Score=28.24 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccccCceEEEEEe-ee
Q 003454 271 EDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHLTKWMNMV-RREKAVYDTLNMLNFDVTKKCLVGEGW-CP 348 (819)
Q Consensus 271 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l~~~~~~~-~kek~iy~~ln~~~~~~t~~~~~~~gW-vP 348 (819)
+......+...+++++|..+++.+......++.+...| +..+..+ +-|.+|.-....|. ..|-+.--+ |.
T Consensus 106 dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l----~~q~~kiqRLE~~Id~c~~~C~----~sC~~~l~~~vD 177 (390)
T 1deq_A 106 NNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNV----RDQLVDMKRLEVDIDIKIRSCK----GSCSRALEHKVD 177 (390)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccc----cccchhhhhhcc
Confidence 44566777788888888888888876655443333322 2222222 22444433333331 223332222 35
Q ss_pred cccHHHHHHHHHhhhc
Q 003454 349 IFAKAQIQEVLQRATF 364 (819)
Q Consensus 349 ~~~~~~l~~~l~~~~~ 364 (819)
.++.++.++.|..+..
T Consensus 178 ~e~ye~qqKQL~qv~a 193 (390)
T 1deq_A 178 LEDYKNQQKQLEQVIA 193 (390)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 6677777777776543
No 40
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=23.37 E-value=1.7e+02 Score=22.81 Aligned_cols=33 Identities=18% Similarity=0.097 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYNEL 131 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l 131 (819)
.+++||..++.++++-.++...++.|++....|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666555444
No 41
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=22.25 E-value=48 Score=29.53 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=22.9
Q ss_pred ccccceEEEEcccccHHHHHHHhcccCc
Q 003454 16 SEKMMFVQLIIPVESAQRAVSYLGELGL 43 (819)
Q Consensus 16 Se~M~~~~Li~p~e~a~~~v~~Lgelg~ 43 (819)
|.+|.++..|++.+...++.++|.+.|.
T Consensus 2 ~~~Mk~I~aIIr~~~~~~v~~AL~~~G~ 29 (116)
T 2ns1_B 2 PGSMKLVTVIIKPFKLEDVREALSSIGI 29 (116)
T ss_dssp --CEEEEEEEECGGGHHHHHHHHHHTTC
T ss_pred CCceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 4568999999999999999999988875
No 42
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=22.06 E-value=4.2e+02 Score=23.59 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=31.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKA 141 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~ 141 (819)
.+.++.+..+++..++..+.++.+.|+....+..+....++..
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l 44 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777777888888888888888877777777666666553
No 43
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=22.02 E-value=1.8e+02 Score=22.81 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQTYNEL 131 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l 131 (819)
+++||..++.++.+-.++...++.|++....+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666555555555555554444
No 44
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.94 E-value=1.5e+02 Score=18.77 Aligned_cols=10 Identities=30% Similarity=0.222 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 003454 109 EHEHELIETN 118 (819)
Q Consensus 109 ~~e~el~e~~ 118 (819)
+++.|+.++.
T Consensus 5 elykeledlq 14 (27)
T 3twe_A 5 ELYKELEDLQ 14 (27)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 45
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.53 E-value=99 Score=23.71 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=22.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 003454 95 GPDLDLEELEIQLAEHEHELIETNSNSEKLRQTY 128 (819)
Q Consensus 95 ~~~~~l~elE~~l~~~e~el~e~~~n~~~L~~~~ 128 (819)
|...+.+.|..+.+++..++.++.+..+.|++++
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777776666666666666655544
No 46
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.31 E-value=2.5e+02 Score=22.99 Aligned_cols=41 Identities=29% Similarity=0.457 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQ 139 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~ 139 (819)
+.+++...+..++.++.++....++....|.+|...|..|+
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le 46 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALD 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777666665555555555544443
No 47
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=21.28 E-value=2.2e+02 Score=21.60 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 003454 68 GEMSRKLRFFKEQINK 83 (819)
Q Consensus 68 eE~erkL~fl~~~i~k 83 (819)
..+|.+..-+++..+.
T Consensus 5 kaleekvkaleekvka 20 (67)
T 1lq7_A 5 KALEEKVKALEEKVKA 20 (67)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555543
No 48
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.84 E-value=2e+02 Score=25.06 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 003454 100 LEELEIQLAEHEHELIETNSNSEKLRQTYNELL 132 (819)
Q Consensus 100 l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~ 132 (819)
...|++..+.++.++..+.++.+.+++.+.++.
T Consensus 72 ~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 72 VAELKEKIETLEVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777888888888887777777776664
No 49
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=20.06 E-value=1.8e+02 Score=26.30 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=0.0
Q ss_pred eeeecCCCCCchhhhhhHhHhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHhhHHHH
Q 003454 45 QFRDLNSDKSPFQRTFVNQVKRCGEMSRKLRFFKEQINKAGLQSSVHPVSGPDLDLEELEIQLAEHEHELIETNSNSEKL 124 (819)
Q Consensus 45 qf~Dln~~~~~fqR~f~~~i~RceE~erkL~fl~~~i~k~~i~~~~~~~~~~~~~l~elE~~l~~~e~el~e~~~n~~~L 124 (819)
++.+++..+...+....+.-.++..+|+.|+-.+..... .+.++...+..++.++.++.....+.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~---------------~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL---------------ALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHhHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 003454 125 RQTYNELLEFKMVLQ 139 (819)
Q Consensus 125 ~~~~~~l~E~~~vL~ 139 (819)
...|.+|...|-.|+
T Consensus 102 l~EYq~LlnvKl~Ld 116 (129)
T 3tnu_B 102 LREYQELMNTKLALD 116 (129)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Done!