Query 003454
Match_columns 819
No_of_seqs 230 out of 950
Neff 7.2
Searched_HMMs 13730
Date Tue Mar 26 01:47:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003454.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/003454hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fxkc_ a.2.5.1 (C:) Prefoldin 63.1 41 0.003 28.3 14.6 43 99-141 2-44 (133)
2 d1u7la_ e.57.1.1 (A:) Vacuolar 56.7 1E+02 0.0076 30.9 27.7 157 188-363 185-344 (388)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 24.0 46 0.0034 28.3 5.3 21 58-81 59-79 (129)
4 d1qvra2 c.37.1.20 (A:149-535) 22.4 89 0.0065 31.4 8.1 44 99-142 283-326 (387)
5 d1ykhb1 a.252.1.1 (B:2-130) RN 19.8 1.3E+02 0.0095 25.2 7.4 52 254-312 71-125 (129)
6 d2cz4a1 d.58.5.1 (A:1-100) Hyp 19.8 25 0.0019 28.5 2.5 27 17-43 4-30 (100)
7 d2e74e1 f.23.24.1 (E:1-32) Pet 13.2 48 0.0035 20.2 1.8 15 415-429 6-20 (32)
8 d1nkpa_ a.38.1.1 (A:) Myc prot 13.0 1.2E+02 0.0091 23.2 5.1 20 107-126 54-73 (88)
9 d1vcsa1 a.47.2.1 (A:8-96) Vesi 12.8 1.1E+02 0.008 23.9 4.7 30 274-303 27-56 (89)
10 d1seta1 a.2.7.1 (A:1-110) Sery 12.3 3E+02 0.022 21.6 7.7 14 29-42 9-22 (110)
No 1
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=63.11 E-value=41 Score=28.28 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=35.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKA 141 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~ 141 (819)
.+.+|...++.+++++..+.++.++++....+....+..|+..
T Consensus 2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l 44 (133)
T d1fxkc_ 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDI 44 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788889999999999999999999988888887777776653
No 2
>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.73 E-value=1e+02 Score=30.89 Aligned_cols=157 Identities=10% Similarity=0.052 Sum_probs=80.1
Q ss_pred CcceEEEeEEecccHHHHHHHHHHhhCCcEEeeecCCCccccCcccccccceEEE-EEEEeChhhHHHHHHHHhhcCceE
Q 003454 188 SGLRFISGIICKSKVLRFERMLFRATRGNMLFNQAPADEEIMDPVTAEMVEKTIF-VVFFSGEQARTKILKICEAFGANC 266 (819)
Q Consensus 188 ~~~~~i~G~I~~~~~~~f~~~l~R~~rgn~~~~~~~i~~~~~~~~~~~~~~k~vf-vv~~~~~~~~~kv~kI~~~~~~~~ 266 (819)
-++..+.=+||+.....|.+.-...+.- +. |.+. .-+..+. +...| |+.| ++..++.+.-|+..+|..
T Consensus 185 EyLtTllVvVPk~~~~dwl~~YEtL~~~-VV------PrSs-~~i~~D~-e~~L~~VtlF--kk~~~eF~~~aRE~kf~v 253 (388)
T d1u7la_ 185 EHLTTVLVAVPKSLKSDFEKSYETLSKN-VV------PASA-SVIAEDA-EYVLFNVHLF--KKNVQEFTTAAREKKFIP 253 (388)
T ss_dssp SSEEEEEEEEEGGGHHHHHHHGGGSSTT-BC------TTCC-EEEEECS-SEEEEEEEEE--GGGHHHHHHHHHHTTCEE
T ss_pred ccceEEEEEeecccHHHHHHHHhhhcCc-cc------CChh-hhceecC-CeeEEEEEEE--hhhHHHHHHHHHHcCccc
Confidence 3677888899999999999876544321 10 1100 0012222 22333 3344 445678888899988888
Q ss_pred eeCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHhhcccccccCceEEEE
Q 003454 267 YPVSEDLTKQRQIIREVLSRLSELEATLDAGIRHRNKALT-SIGFHLTKWMNMVRREKA-VYDTLNMLNFDVTKKCLVGE 344 (819)
Q Consensus 267 ~~~p~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~-~i~~~l~~~~~~~~kek~-iy~~ln~~~~~~t~~~~~~~ 344 (819)
=++-.+++...+..+ +++++++.-+.......+... ...+....|.- +.-.+. +...| +++..-++..+-
T Consensus 254 RdF~y~ee~~~~~~~----e~~~l~~~~~~~~~~L~r~~~~~fse~f~~wiH-iKalRvFVESVL---RYGLP~~F~~~l 325 (388)
T d1u7la_ 254 REFNYSEELIDQLKK----EHDSAASLEQSLRVQLVRLAKTAYVDVFINWFH-IKALRVYVESVL---RYGLPPHFNIKI 325 (388)
T ss_dssp ECCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHCSSCCEEEEE
T ss_pred ccccCCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHhhhhhhh---hcCCCccceEEE
Confidence 776655544433322 222222222222222222211 22333334431 111111 22333 455555555445
Q ss_pred EeeecccHHHHHHHHHhhh
Q 003454 345 GWCPIFAKAQIQEVLQRAT 363 (819)
Q Consensus 345 gWvP~~~~~~l~~~l~~~~ 363 (819)
-..+.+...++++.|.+.-
T Consensus 326 i~p~~k~~kklr~~L~~~f 344 (388)
T d1u7la_ 326 IAVPPKNLSKCKSELIDAF 344 (388)
T ss_dssp EEECTTCHHHHHHHHHHHH
T ss_pred EeeCCchHHHHHHHHHHHh
Confidence 5578888999999998764
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.96 E-value=46 Score=28.27 Aligned_cols=21 Identities=5% Similarity=0.178 Sum_probs=11.4
Q ss_pred hhhhHhHhhhHHHHHHHHHHHHHH
Q 003454 58 RTFVNQVKRCGEMSRKLRFFKEQI 81 (819)
Q Consensus 58 R~f~~~i~RceE~erkL~fl~~~i 81 (819)
+.+...+-++ .|.|.+|-..+
T Consensus 59 ~elA~dii~k---akqId~LI~sL 79 (129)
T d1ykhb1 59 DELSTDIILK---TRQINKLIDSL 79 (129)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHS
T ss_pred HHHHHHHHHH---HhhHHHHHHhC
Confidence 3345555555 56666665544
No 4
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=22.38 E-value=89 Score=31.38 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 003454 99 DLEELEIQLAEHEHELIETNSNSEKLRQTYNELLEFKMVLQKAG 142 (819)
Q Consensus 99 ~l~elE~~l~~~e~el~e~~~n~~~L~~~~~~l~E~~~vL~~~~ 142 (819)
.+.+++.+++.+++++.++.+..+..+....+..+++.-++.++
T Consensus 283 rl~~le~el~~lee~~~~L~~~w~~ek~~l~~i~~Lk~~Le~lr 326 (387)
T d1qvra2 283 RLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVR 326 (387)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554444444444444444433
No 5
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.84 E-value=1.3e+02 Score=25.22 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=32.8
Q ss_pred HHHHHHhhcCceEeeCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003454 254 KILKICEAFGANCYPVSE---DLTKQRQIIREVLSRLSELEATLDAGIRHRNKALTSIGFHL 312 (819)
Q Consensus 254 kv~kI~~~~~~~~~~~p~---~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~l~~i~~~l 312 (819)
.+..+.+++ |+ ++....+.+++++++.++.++++++..++.+.+++.+...+
T Consensus 71 qId~LI~sL-------P~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~i~~~i 125 (129)
T d1ykhb1 71 QINKLIDSL-------PGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMI 125 (129)
T ss_dssp HHHHHHHHS-------TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666654 53 34455566777777777777777776666666666655443
No 6
>d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus thermophilus [TaxId: 274]}
Probab=19.75 E-value=25 Score=28.47 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=22.0
Q ss_pred cccceEEEEcccccHHHHHHHhcccCc
Q 003454 17 EKMMFVQLIIPVESAQRAVSYLGELGL 43 (819)
Q Consensus 17 e~M~~~~Li~p~e~a~~~v~~Lgelg~ 43 (819)
-+|+++.+|+.++.++++.+.|.+.|.
T Consensus 4 ~~mK~v~iIv~~~~~~~v~~~L~~~Gv 30 (100)
T d2cz4a1 4 VPLKLVTIVAESLLEKRLVEEVKRLGA 30 (100)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred cceEEEEEEECHHHHHHHHHHHHHCCC
Confidence 368888888888888888888888874
No 7
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.18 E-value=48 Score=20.21 Aligned_cols=15 Identities=13% Similarity=0.569 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHh
Q 003454 415 VYAVITFPFLFAVMF 429 (819)
Q Consensus 415 ~~~~itFp~~FG~Mf 429 (819)
.|.+++..+|||+..
T Consensus 6 vfyivfialffgiav 20 (32)
T d2e74e1 6 VFYIVFIALFFGIAV 20 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHh
Confidence 455556666666544
No 8
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.01 E-value=1.2e+02 Score=23.21 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q 003454 107 LAEHEHELIETNSNSEKLRQ 126 (819)
Q Consensus 107 l~~~e~el~e~~~n~~~L~~ 126 (819)
+..+..+..++....+.|++
T Consensus 54 I~~L~~~~~~l~~~~~~l~~ 73 (88)
T d1nkpa_ 54 ILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443334333
No 9
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.83 E-value=1.1e+02 Score=23.93 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003454 274 TKQRQIIREVLSRLSELEATLDAGIRHRNK 303 (819)
Q Consensus 274 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~ 303 (819)
.+..+.+.+++..+++.++.+++..-+.+.
T Consensus 27 eerk~~l~~ie~~leEA~ell~qMelEvr~ 56 (89)
T d1vcsa1 27 DEKKQMVANVEKQLEEARELLEQMDLEVRE 56 (89)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 356678899999999999999887765543
No 10
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=12.26 E-value=3e+02 Score=21.61 Aligned_cols=14 Identities=14% Similarity=0.124 Sum_probs=7.9
Q ss_pred ccHHHHHHHhcccC
Q 003454 29 ESAQRAVSYLGELG 42 (819)
Q Consensus 29 e~a~~~v~~Lgelg 42 (819)
++...+...|...|
T Consensus 9 ~n~e~v~~~l~~R~ 22 (110)
T d1seta1 9 QEPEVFHRAIREKG 22 (110)
T ss_dssp HCHHHHHHHHHHTT
T ss_pred hCHHHHHHHHHHcC
Confidence 34455566666665
Done!