BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003455
(818 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XYY2|MED25_ARATH Mediator of RNA polymerase II transcription subunit 25
OS=Arabidopsis thaliana GN=MED25 PE=1 SV=1
Length = 836
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/678 (65%), Positives = 528/678 (77%), Gaps = 29/678 (4%)
Query: 6 YAYSKLSLYFH---RCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVD 62
Y + +S Y R FC +EL G++ S VELSLV FN+HGSYCACLVQRSGWT+DVD
Sbjct: 21 YWQTIVSDYLEKIIRSFCGSELNGERNPVSTVELSLVIFNSHGSYCACLVQRSGWTRDVD 80
Query: 63 IFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 122
IFLHWLS+I F GGGFN+ A AEGL+EALMMFS P Q Q + D +RHCIL+ ASNPH
Sbjct: 81 IFLHWLSSIQFGGGGFNEVATAEGLAEALMMFS--PPSGQAQPSNDLKRHCILITASNPH 138
Query: 123 PLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIY 182
LPTPVYRP++QN+++NEN +AQAESRLSDAETVA F +CSVSLSV+CPKQLP + A+Y
Sbjct: 139 ILPTPVYRPRLQNVERNENGDAQAESRLSDAETVASYFAKCSVSLSVVCPKQLPTIRALY 198
Query: 183 NAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMD---IA 239
NA K N ++AD +D +KN +LVLISENF+EA AALS NL Q+PVK+D +A
Sbjct: 199 NAGKPNQQSADLSIDTAKNTFYLVLISENFVEACAALSH-SATNLPQTQSPVKVDRATVA 257
Query: 240 PVTSVTGPAPTSIPSVNGI--NRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPR 297
P VTG P + S NG NR P+SVG VPTATVKVEPSTVTSM P+FPHIP+V R
Sbjct: 258 PSIPVTGQPPAPVSSANGPIQNRQPVSVGPVPTATVKVEPSTVTSMAPVPSFPHIPAVAR 317
Query: 298 PASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLV-SGMSQPLRPMAPAAANVNILNNLS 356
PA+Q +PS+QTSS S SQ+M+++ ++ P++KP+V SGM+ PLR P ANVN+LNNLS
Sbjct: 318 PATQAIPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRTGPPGGANVNLLNNLS 377
Query: 357 QARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSI 416
Q RQVM++AA + S+GQ+ +AMHMSNMIS+GMA+S+P SQ VFS+ Q GITS+
Sbjct: 378 QVRQVMSSAA----LAGAASSVGQSAVAMHMSNMISTGMATSLPPSQTVFSTGQQGITSM 433
Query: 417 GGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNH 476
GSG L G++Q Q+ G N+ S + + SN +SQPM GM+QG+H
Sbjct: 434 AGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQ------------GMNQGSH 481
Query: 477 SGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQ 536
SG M+Q GISMNQNMMSGLG VSSGTG M+PTPG+ QQAQSG+Q L +N++A NMQ
Sbjct: 482 SGA-MMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSAPNMQ 540
Query: 537 LSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEGYRSASASETLAANWPPTMQI 596
LSQ +S A+ +SQSKYVKVWEG+LSGQRQGQPV IT+LEGYRSASAS++LAANWPPTMQI
Sbjct: 541 LSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASDSLAANWPPTMQI 600
Query: 597 VRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAC 656
VRLISQDHMNNKQYVGKADFLVFRAM+QHGFLGQLQ+KKLCAVIQLPSQTLLLSVSDKAC
Sbjct: 601 VRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKAC 660
Query: 657 RLIGMLFPGDMVVFKPQI 674
RLIGMLFPGDMVVFKPQI
Sbjct: 661 RLIGMLFPGDMVVFKPQI 678
>sp|Q6GP15|MED25_XENLA Mediator of RNA polymerase II transcription subunit 25 OS=Xenopus
laevis GN=med25 PE=2 SV=1
Length = 801
Score = 73.2 bits (178), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 83/193 (43%), Gaps = 23/193 (11%)
Query: 35 ELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMM 93
+ SLV FNT VQ T F+ WL +I F GGG + IAEGLS AL +
Sbjct: 61 QYSLVVFNTVDCAPESYVQCHAPTSSAYEFVQWLDSIKFMGGGGESCSLIAEGLSTALQL 120
Query: 94 FSVAPNGSQNQQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLS 151
F + + + GQ H CIL+ S P+ LP E+ S +
Sbjct: 121 F----DDFKKMREQIGQTHKVCILICNSPPYLLPA---------------VESTTYSGYT 161
Query: 152 DAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISEN 211
E + + + + S+I P++LP L ++ A P D S++P ++L+
Sbjct: 162 -TENLVQKIGERGIHFSIISPRKLPALRTLFEKAMPVGLIEPQPKDYSQDPRHMILVRGM 220
Query: 212 FMEARAALSRPGV 224
+ A S PGV
Sbjct: 221 VLPVGGATSVPGV 233
>sp|A4IHD9|MED25_XENTR Mediator of RNA polymerase II transcription subunit 25 OS=Xenopus
tropicalis GN=med25 PE=2 SV=1
Length = 805
Score = 72.4 bits (176), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 23/193 (11%)
Query: 35 ELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA-IAEGLSEALMM 93
+ SLV FNT VQ T F+ WL +I F GGG + IAEGLS AL +
Sbjct: 62 QYSLVVFNTVDCAPESYVQCHAPTSSAYEFVQWLDSIRFMGGGGESCSLIAEGLSTALQL 121
Query: 94 FSVAPNGSQNQQNVDGQRH--CILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLS 151
F + + + GQ H CIL+ S P+ LP E+ S +
Sbjct: 122 F----DDFKKMREQIGQTHKVCILICNSPPYLLPA---------------VESTTYSGYT 162
Query: 152 DAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISEN 211
E + + + + SVI P++LP L ++ A P D S++P ++L+
Sbjct: 163 -TENLVQKIGERGIHFSVISPRKLPALRTLFEKAMPVGLIEPQPKDYSQDPRHMILVRGM 221
Query: 212 FMEARAALSRPGV 224
+ A S PGV
Sbjct: 222 VLPVGGATSVPGV 234
>sp|Q9VDR1|MED25_DROME Mediator of RNA polymerase II transcription subunit 25
OS=Drosophila melanogaster GN=MED25 PE=2 SV=1
Length = 863
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Query: 68 LSTIPFAGGGFNDAA-IAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT 126
+ +P GGG A +AEG + A F Q QRHCIL+ S P+ +PT
Sbjct: 92 IERLPLVGGGMESCAHMAEGFAAAHGCFDDISERRQLLDQTSVQRHCILICNSPPYQMPT 151
Query: 127 PVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAK 186
E+ + +S E +A F + ++LS+I P+++P L ++ A
Sbjct: 152 ------------TESWKYPGKS----CEQLAALFNERKINLSIIAPRKMPVLFKLFMKAD 195
Query: 187 RNPRAADPPV---DNSKNPHFLVLISENFMEARA 217
D P+ + +KN LVL+ ++ RA
Sbjct: 196 -----GDQPITSKNYAKNIRHLVLLKGYSLKERA 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 292,637,103
Number of Sequences: 539616
Number of extensions: 12623908
Number of successful extensions: 261095
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1778
Number of HSP's successfully gapped in prelim test: 1782
Number of HSP's that attempted gapping in prelim test: 66969
Number of HSP's gapped (non-prelim): 58343
length of query: 818
length of database: 191,569,459
effective HSP length: 126
effective length of query: 692
effective length of database: 123,577,843
effective search space: 85515867356
effective search space used: 85515867356
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)