Query 003455
Match_columns 818
No_of_seqs 300 out of 1380
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 01:48:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iue_A Pactolus I-domain; memb 98.2 1.9E-05 6.4E-10 81.0 14.1 155 1-176 16-176 (212)
2 4b4t_W RPN10, 26S proteasome r 97.7 0.00046 1.6E-08 73.0 14.1 135 5-188 26-164 (268)
3 1ijb_A VON willebrand factor; 97.6 0.00068 2.3E-08 67.0 14.2 133 4-183 30-168 (202)
4 3fcs_B Integrin beta-3; beta p 97.6 0.00068 2.3E-08 80.2 16.0 170 1-185 124-325 (690)
5 3k6s_B Integrin beta-2; cell r 97.4 0.00051 1.7E-08 81.1 12.1 169 1-185 117-315 (687)
6 1atz_A VON willebrand factor; 97.4 0.0014 4.9E-08 63.5 13.3 123 3-172 21-143 (189)
7 1v7p_C Integrin alpha-2; snake 97.3 0.0024 8.2E-08 62.6 13.0 124 1-172 19-145 (200)
8 2xgg_A Microneme protein 2; A/ 97.3 0.001 3.5E-08 64.3 9.9 120 4-171 34-158 (178)
9 3t3p_B Integrin beta-3; integr 97.3 0.0047 1.6E-07 70.0 16.5 166 1-181 124-321 (472)
10 3vi3_B Integrin beta-1; beta p 97.3 0.0048 1.6E-07 69.5 16.4 158 1-174 135-320 (454)
11 2x5n_A SPRPN10, 26S proteasome 97.2 0.0032 1.1E-07 62.9 13.5 111 34-186 46-160 (192)
12 3ibs_A Conserved hypothetical 97.0 0.0053 1.8E-07 60.4 12.5 114 4-171 33-146 (218)
13 3v4v_B Integrin beta-7; cell a 97.0 0.013 4.6E-07 66.6 16.8 165 1-181 145-340 (503)
14 2b2x_A Integrin alpha-1; compu 96.9 0.0077 2.6E-07 60.1 13.0 123 5-172 38-161 (223)
15 3n2n_F Anthrax toxin receptor 96.8 0.0034 1.2E-07 60.1 8.8 124 1-172 20-145 (185)
16 1pt6_A Integrin alpha-1; cell 96.7 0.014 4.7E-07 57.7 12.9 123 5-172 23-146 (213)
17 1mf7_A Integrin alpha M; cell 96.6 0.0051 1.8E-07 59.7 8.8 120 4-172 22-144 (194)
18 1n3y_A Integrin alpha-X; alpha 96.5 0.0061 2.1E-07 59.0 8.6 120 4-172 26-148 (198)
19 1q0p_A Complement factor B; VO 96.2 0.034 1.2E-06 54.5 12.0 107 4-122 32-140 (223)
20 1shu_X Anthrax toxin receptor 95.9 0.027 9.3E-07 53.5 9.2 122 1-172 19-142 (182)
21 3zqk_A VON willebrand factor; 95.9 0.04 1.4E-06 54.1 10.5 101 4-123 38-139 (199)
22 4hqo_A Sporozoite surface prot 95.7 0.044 1.5E-06 56.6 10.4 121 4-173 35-163 (266)
23 2x31_A Magnesium-chelatase 60 95.3 0.0071 2.4E-07 58.3 2.8 94 3-122 21-114 (189)
24 1rrk_A Complement factor B; BB 95.3 0.078 2.7E-06 58.8 11.5 108 4-123 18-127 (497)
25 3hrz_D Complement factor B; se 95.1 0.041 1.4E-06 64.2 8.7 101 4-122 260-368 (741)
26 4hqf_A Thrombospondin-related 94.9 0.085 2.9E-06 54.6 9.7 119 5-172 40-165 (281)
27 3k6s_A Integrin alpha-X; cell 93.9 0.12 4E-06 64.2 9.3 120 5-173 148-270 (1095)
28 2odp_A Complement C2; C3/C5 co 93.4 0.3 1E-05 54.4 10.6 110 4-123 26-138 (509)
29 3iot_A Maltose-binding protein 93.1 0.018 6.2E-07 63.1 0.2 20 153-172 20-40 (449)
30 1jey_B KU80; double-strand DNA 92.5 0.89 3E-05 52.3 13.1 123 4-170 30-165 (565)
31 1mjn_A Integrin alpha-L; rossm 91.9 0.26 8.8E-06 47.5 6.6 96 4-123 19-117 (179)
32 4fx5_A VON willebrand factor t 90.3 1.4 4.9E-05 49.5 11.7 89 4-122 96-192 (464)
33 3rag_A Uncharacterized protein 88.6 0.77 2.6E-05 47.9 7.1 80 1-95 147-226 (242)
34 1jey_A KU70; double-strand DNA 87.2 2.4 8.1E-05 49.3 11.0 110 33-171 80-204 (609)
35 2ww8_A RRGA, cell WALL surface 60.6 25 0.00084 43.0 9.8 100 5-123 248-392 (893)
36 3eh1_A Protein transport prote 53.2 87 0.003 37.4 12.7 111 66-189 254-371 (751)
37 1pcx_A Protein transport prote 48.3 1.1E+02 0.0039 36.7 12.7 111 65-189 288-407 (810)
38 2ky6_A Mediator of RNA polymer 35.8 6.7 0.00023 38.6 -0.4 70 551-624 10-91 (166)
39 3efo_B SEC24 related gene fami 33.0 2.6E+02 0.0089 33.4 12.4 101 78-189 290-396 (770)
40 3eh2_A Protein transport prote 28.9 4.4E+02 0.015 31.4 13.5 114 65-189 271-392 (766)
41 1yvr_A RO autoantigen, 60-kDa 28.8 1.1E+02 0.0039 34.5 8.1 61 34-119 408-470 (538)
42 3csu_A Protein (aspartate carb 21.7 1.3E+02 0.0046 32.1 6.5 134 45-216 96-234 (310)
No 1
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=98.17 E-value=1.9e-05 Score=80.97 Aligned_cols=155 Identities=10% Similarity=0.072 Sum_probs=111.6
Q ss_pred CchhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccCCCCCCCh
Q 003455 1 MCIYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFND 80 (818)
Q Consensus 1 m~~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG~~~ 80 (818)
|+.|++.+|+-+..+++-+.. ...++.+|++.|+++ .+.....+|+|..+|..+|+++..+||+...
T Consensus 16 M~~di~~lk~~~~~l~~~l~~--------~~~~~r~Gfg~f~Dk-----~~~~~l~lT~d~~~F~~~v~~~~vsg~~D~P 82 (212)
T 2iue_A 16 AQGHLSNVQTLGSDLLKALNE--------ISRSGRIGFGSIVNM-----TFQHILKLTADSSQFQRELRKQLVSGKLATP 82 (212)
T ss_dssp GTTTHHHHHHHHHHHHHHHHH--------HCSCEEEEEEEESSS-----CEEEEEEEESCHHHHHHHHHTCCCCCCSSSS
T ss_pred chhHHHHHHHHHHHHHHHHHh--------hCcCceEEEEEEEcC-----cceecCCcCCCHHHHHHHHhhccccCCCCCC
Confidence 889999999888888877742 123699999999998 2456788999999999999999999999777
Q ss_pred hhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCC----CCcCcc--cccccccchhhhhhhccCCCHH
Q 003455 81 AAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT----PVYRPQ--MQNLDQNENNEAQAESRLSDAE 154 (818)
Q Consensus 81 ~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~----~~~~p~--~~~l~~~~~~~~~~~~~l~~~e 154 (818)
.+.-|||-.|+.|.+ ..+- +. ..|.+||++..+||...= ..+.|. -|.|.++.-..+..+ ...+++
T Consensus 83 E~g~dal~qa~~c~~--~i~W----r~-a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~chl~~g~y~~s~~~-Dyps~~ 154 (212)
T 2iue_A 83 KGQLDAVVQVAICLG--EIGW----RN-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGRCHLDDGMYRSRGEP-DYQSVV 154 (212)
T ss_dssp BCHHHHHHHHHHCHH--HHTC----CS-SEEEEEEECSSCBCCTTGGGGGTCCSCCCSSCCBSSSBBGGGGSS-CCCCHH
T ss_pred chHHHHHHHHHHhhh--hccc----CC-ccEEEEEECcCCccccCCccccccccCCccccccCCCeeccCccc-CCCCHH
Confidence 788889999987732 0000 23 779999999999998531 122233 233332211111122 235999
Q ss_pred HHHHHHhhcCceEEEeCCCcch
Q 003455 155 TVAKSFVQCSVSLSVICPKQLP 176 (818)
Q Consensus 155 ~la~~~~~~~I~lSiIsPrklp 176 (818)
++.+.+.+++|.+-+...+...
T Consensus 155 q~~~~l~~~~i~~ifavt~~~~ 176 (212)
T 2iue_A 155 QLASKLAENNIQPIFVVPSRMV 176 (212)
T ss_dssp HHHHHHHHHTCEEEEEEEHHHH
T ss_pred HHHHHHHhcCCcEEEEEccchh
Confidence 9999999999998888776543
No 2
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00046 Score=72.99 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=95.4
Q ss_pred hHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccCCCCCCChhhHH
Q 003455 5 FYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIA 84 (818)
Q Consensus 5 ~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG~~~~aia 84 (818)
|+..++.+.-+++.+.... .....|||+|....+ .| ...+|+|..+++..|++|+..|+ ..++
T Consensus 26 l~a~k~Av~~li~~~~~~n--------Ped~VGLVtfag~~~----~v-l~plT~D~~~il~aL~~l~~~G~----T~l~ 88 (268)
T 4b4t_W 26 FEAQIDSVEFIFQAKRNSN--------PENTVGLISGAGANP----RV-LSTFTAEFGKILAGLHDTQIEGK----LHMA 88 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------TTCEEEEEECCTTSC----EE-EEEEESCHHHHHHHHTTCCCCSC----CCHH
T ss_pred HHHHHHHHHHHHHHHhhCC--------CcceEEEEEecCCcc----ee-ccCCcchHHHHHHHhhhcCcCCC----CChH
Confidence 4556667777777653211 136899999976432 22 25789999999999999986433 5788
Q ss_pred HHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHHHHhhcC
Q 003455 85 EGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCS 164 (818)
Q Consensus 85 EGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~~~~~ 164 (818)
.||..|+..+. ........++.||+..++=.. .-.+++.+|+.+.++|
T Consensus 89 ~gL~~A~~aLk-------~~~~k~~~~rIIlf~ds~~~~-------------------------~~~~l~~lak~lkk~g 136 (268)
T 4b4t_W 89 TALQIAQLTLK-------HRQNKVQHQRIVAFVCSPISD-------------------------SRDELIRLAKTLKKNN 136 (268)
T ss_dssp HHHHHHHHHHH-------TCSCTTSEEEEEEEECSCCSS-------------------------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-------hcccCCCceEEEEEECCCCCC-------------------------CHHHHHHHHHHHHHcC
Confidence 89999998884 112344556677777774110 0137889999999999
Q ss_pred ceEEEeCC----CcchHHHHHHHHhcCC
Q 003455 165 VSLSVICP----KQLPKLTAIYNAAKRN 188 (818)
Q Consensus 165 I~lSiIsP----rklp~L~~lf~~a~~~ 188 (818)
|.|+||.= .+-..|++|.++..++
T Consensus 137 I~v~vIgFG~~~~n~~kLe~l~~~~Ng~ 164 (268)
T 4b4t_W 137 VAVDIINFGEIEQNTELLDEFIAAVNNP 164 (268)
T ss_dssp EEEEEEEESSCCSSCCHHHHHHHHHCSS
T ss_pred CEEEEEEeCCCccchHHHHHHHHHhcCC
Confidence 99999984 3577799999999765
No 3
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=97.63 E-value=0.00068 Score=66.98 Aligned_cols=133 Identities=17% Similarity=0.182 Sum_probs=93.8
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCC--CCHHHHHHHhccccCCCCCCChh
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDIFLHWLSTIPFAGGGFNDA 81 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T--~~~~~fl~wL~~i~f~GGG~~~~ 81 (818)
-|+.+|+++..+++.|.-++ ..+.+|||.|.+..- ..+.++ .|...|...|++|++.|||. .
T Consensus 30 ~~~~~k~~~~~~v~~l~~~~--------~~~rv~vv~fs~~~~------~~~~l~~~~~~~~~~~~i~~l~~~gg~~--T 93 (202)
T 1ijb_A 30 EFEVLKAFVVDMMERLRVSQ--------KWVRVAVVEYHDGSH------AYIGLKDRKRPSELRRIASQVKYAGSQV--A 93 (202)
T ss_dssp HHHHHHHHHHHHHHTBCBST--------TSEEEEEEEESSSEE------EEECTTCCCCHHHHHHHHHTCCCCCBSC--C
T ss_pred HHHHHHHHHHHHHHhcccCC--------CceEEEEEEECCCce------EEEecCCCCCHHHHHHHHHhCcCCCCCc--C
Confidence 57888999999999995321 358999999987631 123333 78999999999999988753 5
Q ss_pred hHHHHHHHHH-hhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHHHH
Q 003455 82 AIAEGLSEAL-MMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSF 160 (818)
Q Consensus 82 aiaEGLa~AL-~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~ 160 (818)
.+++||..|+ ++|. . ..+....|..|||+.-.+.. ....++...|+.+
T Consensus 94 ~~~~aL~~a~~~~~~---~----~~r~~~~~~iillTDG~~~~------------------------~~~~~~~~~a~~l 142 (202)
T 1ijb_A 94 STSEVLKYTLFQIFS---K----IDRPEASRIALLLMASQEPQ------------------------RMSRNFVRYVQGL 142 (202)
T ss_dssp CHHHHHHHHHHHTSS---S----CSCTTSEEEEEEEECCCCCG------------------------GGCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc---c----CCCCCCCeEEEEEccCCCCc------------------------cchHHHHHHHHHH
Confidence 6788899998 5664 1 12346778899999876532 0123677889999
Q ss_pred hhcCceEEEeCCCc---chHHHHHHH
Q 003455 161 VQCSVSLSVICPKQ---LPKLTAIYN 183 (818)
Q Consensus 161 ~~~~I~lSiIsPrk---lp~L~~lf~ 183 (818)
.+.+|.+-.|.=-. ...|+.|=.
T Consensus 143 ~~~gi~i~~igvG~~~~~~~L~~iA~ 168 (202)
T 1ijb_A 143 KKKKVIVIPVGIGPHANLKQIRLIEK 168 (202)
T ss_dssp HHTTEEEEEEEESTTSCHHHHHHHHH
T ss_pred HHCCCEEEEEecCCcCCHHHHHHHhC
Confidence 99999988875321 234555544
No 4
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=97.60 E-value=0.00068 Score=80.16 Aligned_cols=170 Identities=9% Similarity=0.029 Sum_probs=112.6
Q ss_pred CchhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCc-----------------------Cc-eeecc
Q 003455 1 MCIYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCA-----------------------CL-VQRSG 56 (818)
Q Consensus 1 m~~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~-----------------------~~-v~~~g 56 (818)
|+.|++.||+.+..+++-+.. ...++.+|++.|+++.-.|. +. -....
T Consensus 124 M~ddi~~lk~l~~~l~~~l~~--------~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~f~f~~~l~ 195 (690)
T 3fcs_B 124 MKDDLWSIQNLGTKLATQMRK--------LTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLT 195 (690)
T ss_dssp GHHHHHHTTTTTHHHHHHHHH--------HCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCCCSEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHh--------hCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCCccceeecc
Confidence 788999999988888888753 23469999999999663221 11 12257
Q ss_pred CCCCHHHHHHHhccccCCCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCC----CCcCc-
Q 003455 57 WTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT----PVYRP- 131 (818)
Q Consensus 57 ~T~~~~~fl~wL~~i~f~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~----~~~~p- 131 (818)
+|+|..+|..+|+++..+||+....+.-|||..|+.+.+ ..+ =+....|..||++..++|..-- ..++|
T Consensus 196 lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~--~ig----Wr~~a~rllv~~TDa~~H~agDg~l~gi~~pn 269 (690)
T 3fcs_B 196 LTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDE--KIG----WRNDASHLLVFTTDAKTHIALDGRLAGIVQPN 269 (690)
T ss_dssp EESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHH--HHT----CCSSSEEEEEEEESSCBCCTTGGGGGTCCSCC
T ss_pred cCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhccc--ccC----CCCCceEEEEEECCCccccCCCccccceecCC
Confidence 899999999999999999999777777799999985542 000 0346788899999999983110 01112
Q ss_pred -cccccccc-chhhhhhhccCCCHHHHHHHHhhcCceEEEeCCCcc-hHHHHHHHHh
Q 003455 132 -QMQNLDQN-ENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQL-PKLTAIYNAA 185 (818)
Q Consensus 132 -~~~~l~~~-~~~~~~~~~~l~~~e~la~~~~~~~I~lSiIsPrkl-p~L~~lf~~a 185 (818)
..+-|+.. .-..+..+ -.-++.+|++.|.+++|.+-|...+.. ...++|.+..
T Consensus 270 d~~chl~~~~~y~~s~~~-DypSi~ql~~~l~~~~i~~ifavt~~~~~~y~~l~~~i 325 (690)
T 3fcs_B 270 DGQCHVGSDNHYSASTTM-DYPSLGLMTEKLSQKNINLIFAVTENVVNLYQNYSELI 325 (690)
T ss_dssp CCCCCBCTTCBBGGGGTS-CCCCHHHHHHHHHHTTCEEEEEEEGGGHHHHHHHHHHS
T ss_pred CcceeecCCCcccccccc-CCCCHHHHHHHHHHcCCeEEEEEeCCchhhHHHHHhhc
Confidence 22223211 00011111 123699999999999999888777654 4445554443
No 5
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=97.45 E-value=0.00051 Score=81.13 Aligned_cols=169 Identities=8% Similarity=0.008 Sum_probs=111.3
Q ss_pred CchhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCc----------------------C-ceeeccC
Q 003455 1 MCIYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCA----------------------C-LVQRSGW 57 (818)
Q Consensus 1 m~~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~----------------------~-~v~~~g~ 57 (818)
|+.|++.+|+.+..+++-+.. ...++.+|++.|+++.-.|- + +-....+
T Consensus 117 M~ddi~~lk~l~~~l~~~l~~--------~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~f~f~~~l~l 188 (687)
T 3k6s_B 117 MLDDLRNVKKLGGDLLRALNE--------ITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHVLKL 188 (687)
T ss_dssp THHHHHTTTTCCTTHHHHHHS--------SCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCCCSCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHh--------hCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCcccceeeccc
Confidence 888999999888888887753 23479999999999542221 1 1123568
Q ss_pred CCCHHHHHHHhccccCCCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCC----CCc--Cc
Q 003455 58 TKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT----PVY--RP 131 (818)
Q Consensus 58 T~~~~~fl~wL~~i~f~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~----~~~--~p 131 (818)
|+|..+|..+|+++..+||+....+.-|||..|+.+-+ ..+- +. ..|..||++..++|..-- ..+ +-
T Consensus 189 t~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~~--~igW----r~-a~rllV~~TDa~~H~agDg~l~gi~~pnd 261 (687)
T 3k6s_B 189 TNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACPE--EIGW----RN-VTRLLVFATDDGFHFAGDGKLGAILTPND 261 (687)
T ss_dssp ESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCHH--HHCC----CS-SCCEEEEECSSCCCCTTGGGGGTCCCCCC
T ss_pred CCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhccc--ccCC----cc-ceEEEEEECCCccccCCCccccceecCCC
Confidence 99999999999999999999777677789988884431 0000 23 778889999999883110 011 22
Q ss_pred ccccccccchhhhhhhccCCCHHHHHHHHhhcCceEEEeCCCc-chHHHHHHHHh
Q 003455 132 QMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ-LPKLTAIYNAA 185 (818)
Q Consensus 132 ~~~~l~~~~~~~~~~~~~l~~~e~la~~~~~~~I~lSiIsPrk-lp~L~~lf~~a 185 (818)
..+-|..+.-..+..++ .-++.+|++.|.+++|.+-|...+. +..+++|.+..
T Consensus 262 g~Chl~~~~y~~s~~~D-yPS~~ql~~~l~~~~I~~ifavt~~~~~~y~~l~~~i 315 (687)
T 3k6s_B 262 GRCHLEDNLYKRSNEFD-YPSVGQLAHKLAENNIQPIFAVTSRMVKTYEKLTEII 315 (687)
T ss_dssp SCCCCSSSBCSSGGGSC-CCCGGGHHHHHHHTTCBCCEEECGGGHHHHHHHHHHS
T ss_pred CccccCCCccccccccC-CCCHHHHHHHHHHcCCeEEEEEeccchhhHHHHHhhc
Confidence 22334311101111121 2368999999999999988777654 45556665544
No 6
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=97.44 E-value=0.0014 Score=63.54 Aligned_cols=123 Identities=11% Similarity=0.157 Sum_probs=85.9
Q ss_pred hhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccCCCCCCChhh
Q 003455 3 IYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA 82 (818)
Q Consensus 3 ~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG~~~~a 82 (818)
.-|+.+|++|..+++.|.-++ ..++++||.|.+..- .+-.+..+.|...+...|++|.+.||| ..
T Consensus 21 ~~~~~~k~~~~~~~~~l~~~~--------~~~rv~lv~f~~~~~----~~~~l~~~~~~~~~~~~i~~l~~~~g~---T~ 85 (189)
T 1atz_A 21 SYFDEMKSFAKAFISKANIGP--------RLTQVSVLQYGSITT----IDVPWNVVPEKAHLLSLVDVMQREGGP---SQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHSCBST--------TSEEEEEEEESSSEE----EEECTTCCCCHHHHHHHHHTCCCCCCC---CC
T ss_pred hhHHHHHHHHHHHHHhcCcCC--------CCeEEEEEEECCcce----EEEecCCCCCHHHHHHHHHhCcCCCCc---ch
Confidence 457888899999999985321 358999999976421 111223389999999999999998776 57
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHHHHhh
Q 003455 83 IAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQ 162 (818)
Q Consensus 83 iaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~~~ 162 (818)
+++||..|+..+.....+ .+....|++||+..--+.. +.+.+++.+.+
T Consensus 86 ~~~aL~~a~~~l~~~~~g----~r~~~~~~vivltdg~~~~----------------------------~~~~~~~~~~~ 133 (189)
T 1atz_A 86 IGDALGFAVRYLTSEMHG----ARPGASKAVVILVTDVSVD----------------------------SVDAAADAARS 133 (189)
T ss_dssp HHHHHHHHHHHHHSCCTT----CCTTSEEEEEEEECSCCSS----------------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccC----CCCCCCcEEEEEeCCCCCc----------------------------hHHHHHHHHHH
Confidence 889999999766411111 1234567788887654321 34678888999
Q ss_pred cCceEEEeCC
Q 003455 163 CSVSLSVICP 172 (818)
Q Consensus 163 ~~I~lSiIsP 172 (818)
.+|.+.+|.=
T Consensus 134 ~gi~v~~igv 143 (189)
T 1atz_A 134 NRVTVFPIGI 143 (189)
T ss_dssp TTEEEEEEEE
T ss_pred CCCEEEEEEc
Confidence 9999988854
No 7
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=97.28 E-value=0.0024 Score=62.60 Aligned_cols=124 Identities=11% Similarity=0.099 Sum_probs=88.8
Q ss_pred CchhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCC--CCHHHHHHHhccccCCCCCC
Q 003455 1 MCIYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWT--KDVDIFLHWLSTIPFAGGGF 78 (818)
Q Consensus 1 m~~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T--~~~~~fl~wL~~i~f~GGG~ 78 (818)
|+. |+.+|+++..+++.|.-+ .....++||+|.+.. + ..+.+| .+...++..|++|.+.||+.
T Consensus 19 m~~-~~~~k~~~~~~~~~l~~~--------~~~~rvglv~f~~~~-~-----~~~~l~~~~~~~~~~~~i~~l~~~~G~~ 83 (200)
T 1v7p_C 19 IYP-WDAVKNFLEKFVQGLDIG--------PTKTQVGLIQYANNP-R-----VVFNLNTYKTKEEMIVATSQTSQYGGDL 83 (200)
T ss_dssp CCC-HHHHHHHHHHHHHTSCBS--------TTSEEEEEEEESSSE-E-----EEECTTTCSSHHHHHHHHHHCCCCCCSC
T ss_pred ccc-HHHHHHHHHHHHHhcCCC--------CCceEEEEEEECCCc-e-----EEEeCCCcCCHHHHHHHHHhhhccCCCC
Confidence 443 788889999999998532 135899999998753 1 123343 68899999999999887742
Q ss_pred ChhhHHHHHHHHHh-hhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHH
Q 003455 79 NDAAIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVA 157 (818)
Q Consensus 79 ~~~aiaEGLa~AL~-~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la 157 (818)
..+++||..|+. +|.. . ...+....|..|||+.-.+.. . .+.+.+|
T Consensus 84 --T~~~~al~~a~~~~~~~--~---~g~r~~~~~~ivllTDG~~~~-------------------------~-~~~~~~~ 130 (200)
T 1v7p_C 84 --TNTFGAIQYARKYAYSA--A---SGGRRSATKVMVVVTDGESHD-------------------------G-SMLKAVI 130 (200)
T ss_dssp --CCHHHHHHHHHHHTTSG--G---GTCCTTSEEEEEEEESSCCSC-------------------------G-GGHHHHH
T ss_pred --CcHHHHHHHHHHhhccc--c---cCCCCCCCeEEEEEccCCCCC-------------------------c-ccHHHHH
Confidence 458899999997 4641 1 112346788999999876542 0 1456788
Q ss_pred HHHhhcCceEEEeCC
Q 003455 158 KSFVQCSVSLSVICP 172 (818)
Q Consensus 158 ~~~~~~~I~lSiIsP 172 (818)
+.+.+.+|.+.+|.=
T Consensus 131 ~~~~~~gi~i~~igv 145 (200)
T 1v7p_C 131 DQCNHDNILRFGIAV 145 (200)
T ss_dssp HHHHHTTEEEEEEEE
T ss_pred HHHHHCCCEEEEEEe
Confidence 899999999998865
No 8
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.27 E-value=0.001 Score=64.33 Aligned_cols=120 Identities=14% Similarity=0.203 Sum_probs=86.7
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCC----CHHHHHHHhccccCCCCCCC
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DVDIFLHWLSTIPFAGGGFN 79 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~----~~~~fl~wL~~i~f~GGG~~ 79 (818)
.|+.+|++|..+++.|..+ ...+.++||.|.+..- ..+.++. +...|+.+|++|.+.|||
T Consensus 34 ~~~~~k~~~~~~i~~l~~~--------~~~~rv~vv~F~~~~~------~~~~l~~~~~~~~~~~~~~i~~l~~~~g~-- 97 (178)
T 2xgg_A 34 NFRLVKQFLHTFLMVLPIG--------PEEVNNAVVTYSTDVH------LQWDLQSPNAVDKQLAAHAVLDMPYKKGS-- 97 (178)
T ss_dssp HHHHHHHHHHHHHHHSCBS--------TTSEEEEEEEESSSEE------EEECTTSGGGSCHHHHHHHHHHCCCCCCC--
T ss_pred HHHHHHHHHHHHHHhcCCC--------CCCeEEEEEEeCCceE------EEEeCCCCCccCHHHHHHHHHhCCCCCCC--
Confidence 5788889999999998532 2358999999987531 1233333 889999999999998875
Q ss_pred hhhHHHHHHHHHhh-hccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHH
Q 003455 80 DAAIAEGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAK 158 (818)
Q Consensus 80 ~~aiaEGLa~AL~~-~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~ 158 (818)
..+++||..|+.. |. ... ..+....|..|||+.-.+.. + .+++.+++
T Consensus 98 -T~~~~aL~~a~~~l~~--~~~---g~r~~~~~~iillTDG~~~~-------------------~-------~~~~~~~~ 145 (178)
T 2xgg_A 98 -TNTSDGLKACKQILFT--GSR---PGREHVPKLVIGMTDGESDS-------------------D-------FRTVRAAK 145 (178)
T ss_dssp -CCHHHHHHHHHHHHHH--CCC---TTCTTSCEEEEEEESSCCCH-------------------H-------HHHSHHHH
T ss_pred -ccHHHHHHHHHHHhcC--ccc---CCCCCCCEEEEEEcCCCCCC-------------------C-------ccHHHHHH
Confidence 4688899999975 54 111 11346788999998865432 0 14567889
Q ss_pred HHhhcCceEEEeC
Q 003455 159 SFVQCSVSLSVIC 171 (818)
Q Consensus 159 ~~~~~~I~lSiIs 171 (818)
.+.+.+|.+.+|.
T Consensus 146 ~l~~~gi~v~~ig 158 (178)
T 2xgg_A 146 EIRELGGIVTVLA 158 (178)
T ss_dssp HHHHTTCEEEEEE
T ss_pred HHHHCCCEEEEEE
Confidence 9999999999884
No 9
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=97.26 E-value=0.0047 Score=69.95 Aligned_cols=166 Identities=9% Similarity=0.029 Sum_probs=111.4
Q ss_pred CchhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCC--C---------------------CcCcee-ecc
Q 003455 1 MCIYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGS--Y---------------------CACLVQ-RSG 56 (818)
Q Consensus 1 m~~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~--~---------------------~~~~v~-~~g 56 (818)
|+.|++.+|+-...+++-+.. ...+..+|++.|++++- | +.+... ...
T Consensus 124 M~ddl~~lk~lg~~L~~~l~~--------~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p~f~fr~~l~ 195 (472)
T 3t3p_B 124 MKDDLWSIQNLGTKLATQMRK--------LTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHVLT 195 (472)
T ss_dssp GHHHHHHTTTHHHHHHHHHTT--------TCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCCCCSEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHh--------cCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCCCcceeEeec
Confidence 788899999888888888853 24579999999999642 2 122111 357
Q ss_pred CCCCHHHHHHHhccccCCCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCC------CcC
Q 003455 57 WTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTP------VYR 130 (818)
Q Consensus 57 ~T~~~~~fl~wL~~i~f~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~------~~~ 130 (818)
+|+|..+|..++.++..+||+....+.-|||-.|+.|-+ ..+ =+....|..||++..++|..--. .++
T Consensus 196 LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~--~ig----WR~~a~rllV~~TDa~~H~agDgkL~GIv~pn 269 (472)
T 3t3p_B 196 LTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDE--KIG----WRNDASHLLVFTTDAKTHIALDGRLAGIVQPN 269 (472)
T ss_dssp EESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHH--HHT----CCSSSEEEEEEEESSCBCCTTGGGGGTCCCCC
T ss_pred cCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchh--hcC----CCCCceEEEEEECCCCcCcCCCccccceecCC
Confidence 899999999999999999999777777899998886542 000 03467888999999999853211 112
Q ss_pred ccccccccc-chhhhhhhccCCCHHHHHHHHhhcCceEEEeCCCc-chHHHHH
Q 003455 131 PQMQNLDQN-ENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ-LPKLTAI 181 (818)
Q Consensus 131 p~~~~l~~~-~~~~~~~~~~l~~~e~la~~~~~~~I~lSiIsPrk-lp~L~~l 181 (818)
-.-|-|+.+ .-..+..++ .-++.+|++.+.|++|.+=+...+. ...+++|
T Consensus 270 Dg~CHL~~~~~Y~~s~~~D-YPSv~ql~~~l~e~nI~~IFAVt~~~~~~Y~~L 321 (472)
T 3t3p_B 270 DGQCHVGSDNHYSASTTMD-YPSLGLMTEKLSQKNINLIFAVTENVVNLYQNY 321 (472)
T ss_dssp CCCCCBCTTCBBTTTTTSC-CCCHHHHHHHHHHTTCEEEEEECGGGHHHHHHH
T ss_pred CCceEECCCCcccccccCC-CCCHHHHHHHHHhcCccEEEEEeccchhHHHHH
Confidence 233334321 111111222 2389999999999999987766654 3333444
No 10
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=97.25 E-value=0.0048 Score=69.52 Aligned_cols=158 Identities=8% Similarity=-0.004 Sum_probs=109.3
Q ss_pred CchhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCC---------------C------CCcCcee-eccCC
Q 003455 1 MCIYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHG---------------S------YCACLVQ-RSGWT 58 (818)
Q Consensus 1 m~~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~---------------~------~~~~~v~-~~g~T 58 (818)
|+.+++.+|+-...+++-... ...+..+|++.|.+++ | -+.+... ...+|
T Consensus 135 M~ddl~~lk~lg~~L~~~l~~--------~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f~fr~~l~LT 206 (454)
T 3vi3_B 135 MKDDLENVKSLGTDLMNEMRR--------ITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPFSYKNVLSLT 206 (454)
T ss_dssp GHHHHHHHTTHHHHHHHHHTT--------TCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCCSEEEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHh--------cCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCcceeeeeecC
Confidence 777888888888888887753 2347999999999963 1 1222222 47889
Q ss_pred CCHHHHHHHhccccCCCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCC------CCcCcc
Q 003455 59 KDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT------PVYRPQ 132 (818)
Q Consensus 59 ~~~~~fl~wL~~i~f~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~------~~~~p~ 132 (818)
+|..+|..++.++..+||+....+.-|||-.|+.|-+ ..+- +. ..|..||++..++|..-- ..++-.
T Consensus 207 ~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~--~igW----R~-a~rllV~~TDa~fH~agDgkL~GIv~PNDg 279 (454)
T 3vi3_B 207 NKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGS--LIGW----RN-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDG 279 (454)
T ss_dssp SCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHH--HHTC----CS-SEEEEEEEESSCBCCTTTTGGGTCCSCCCC
T ss_pred CCHHHHHHHHhhccccCCCcCCchhHHHHHHHhcccc--ccCC----cc-ceEEEEEECCCCcCcCCCccccceecCCCC
Confidence 9999999999999999999888788899998887632 0000 23 778889999999985321 112334
Q ss_pred cccccccchhhhhhhccCCCHHHHHHHHhhcCceEEEeCCCc
Q 003455 133 MQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQ 174 (818)
Q Consensus 133 ~~~l~~~~~~~~~~~~~l~~~e~la~~~~~~~I~lSiIsPrk 174 (818)
-|-|+.+.-..+..++- -++.+|++.+.|++|.+=|...++
T Consensus 280 ~CHL~~~~Yt~s~~~DY-PSv~ql~~~l~e~nI~~IFAVt~~ 320 (454)
T 3vi3_B 280 QCHLENNMYTMSHYYDY-PSIAHLVQKLSENNIQTIFAVTEE 320 (454)
T ss_dssp CCCEETTEECCTTTSCC-CCHHHHHHHHHHTTEEEEEEEEGG
T ss_pred ccEeCCCcccccccCCC-CCHHHHHHHHHhcCCcEEEEEcCc
Confidence 45555222111122222 389999999999999987776654
No 11
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=97.24 E-value=0.0032 Score=62.89 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=76.7
Q ss_pred ceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccCCCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEE
Q 003455 34 VELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHC 113 (818)
Q Consensus 34 ~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhC 113 (818)
.+.|||+|.+...+- ...+|.|..+++..|++|...| | .++++||..|+.+|.- . ......++.
T Consensus 46 d~vGLV~fa~~~a~~-----~~plT~d~~~i~~~L~~l~~~g-~---t~l~~aL~~A~~~l~~--~-----~~~~~~~ri 109 (192)
T 2x5n_A 46 NMCGLMTIGDNSPQV-----LSTLTRDYGKFLSAMHDLPVRG-N---AKFGDGIQIAQLALKH--R-----ENKIQRQRI 109 (192)
T ss_dssp CEEEEEECCTTSCCE-----EEEEESCHHHHHHHHTTCCCCS-C---CCHHHHHHHHHHHHHT--C-----SCTTSEEEE
T ss_pred CeEEEEEEcCCCcEE-----ecCCCCCHHHHHHHHHcCCCCC-C---chHHHHHHHHHHHHHh--c-----cccCCCceE
Confidence 789999999753332 2578899999999999988754 2 6899999999998851 1 111223334
Q ss_pred EEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHHHHhhcCceEEEeCCC----cchHHHHHHHHhc
Q 003455 114 ILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPK----QLPKLTAIYNAAK 186 (818)
Q Consensus 114 ILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~~~~~I~lSiIsPr----klp~L~~lf~~a~ 186 (818)
||+..+. +. . ...+.+.+|+.+.+.+|.+++|.=- .-. |+.|.++..
T Consensus 110 iil~~~~-~~---~---------------------~~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~n 160 (192)
T 2x5n_A 110 VAFVGSP-IV---E---------------------DEKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAAN 160 (192)
T ss_dssp EEEECSC-CS---S---------------------CHHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHHC
T ss_pred EEEEECC-CC---C---------------------CchhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhcc
Confidence 4444331 10 0 0125788999999999999998741 225 999998875
No 12
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=97.02 E-value=0.0053 Score=60.37 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=83.4
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccCCCCCCChhhH
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAI 83 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG~~~~ai 83 (818)
.|+..|+.+..+++.+. ...++||+|.+. ....+.+|.|...+..+|++|...........+
T Consensus 33 r~~~ak~~~~~~~~~~~------------~~~v~lv~F~~~------~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~T~l 94 (218)
T 3ibs_A 33 RLEKAKRLISRLVDELD------------NDKVGMIVFAGD------AFTQLPITSDYISAKMFLESISPSLISKQGTAI 94 (218)
T ss_dssp HHHHHHHHHHHHHHTCS------------SCEEEEEEESSS------EEEEEEEESCHHHHHHHHHTCCGGGCCSCSCCH
T ss_pred HHHHHHHHHHHHHHhCC------------CCeEEEEEECCC------ceEeCCCCCCHHHHHHHHHhcCcccCCCCCCcH
Confidence 46677777777777662 368999999865 223467888999999999999874222223668
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHHHHhhc
Q 003455 84 AEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQC 163 (818)
Q Consensus 84 aEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~~~~ 163 (818)
.+||..|+.+|. ......|.+|||+.-.+.. .+++.+++.+.++
T Consensus 95 ~~al~~a~~~l~---------~~~~~~~~ivllTDG~~~~---------------------------~~~~~~~~~~~~~ 138 (218)
T 3ibs_A 95 GEAINLATRSFT---------PQEGVGRAIIVITDGENHE---------------------------GGAVEAAKAAAEK 138 (218)
T ss_dssp HHHHHHHHTTSC---------SCSSCCEEEEEEECCTTCC---------------------------SCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh---------hCCCCCcEEEEEcCCCCCC---------------------------CcHHHHHHHHHhc
Confidence 999999998885 1135677888887654322 1577889999999
Q ss_pred CceEEEeC
Q 003455 164 SVSLSVIC 171 (818)
Q Consensus 164 ~I~lSiIs 171 (818)
+|.+.+|.
T Consensus 139 ~i~v~~ig 146 (218)
T 3ibs_A 139 GIQVSVLG 146 (218)
T ss_dssp TEEEEEEE
T ss_pred CCEEEEEE
Confidence 99999885
No 13
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=96.98 E-value=0.013 Score=66.64 Aligned_cols=165 Identities=12% Similarity=0.068 Sum_probs=109.1
Q ss_pred CchhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCC--CC--------------------CcCcee-eccC
Q 003455 1 MCIYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHG--SY--------------------CACLVQ-RSGW 57 (818)
Q Consensus 1 m~~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~--~~--------------------~~~~v~-~~g~ 57 (818)
|+.|++.+|+-...+++-+.. ...+..+|++.|++++ +| +.+... ...+
T Consensus 145 M~ddl~~lk~lg~~L~~~l~~--------~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~f~fr~~l~L 216 (503)
T 3v4v_B 145 MKDDLERVRQLGHALLVRLQE--------VTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSPFSFHHVLSL 216 (503)
T ss_dssp GHHHHHHHHHSSHHHHHHHTT--------TCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCCCSEEEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHh--------hCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCCcceEEEEEe
Confidence 778889999888888888753 3457999999999963 11 122222 3578
Q ss_pred CCCHHHHHHHhccccCCCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCC----CC--cCc
Q 003455 58 TKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPT----PV--YRP 131 (818)
Q Consensus 58 T~~~~~fl~wL~~i~f~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~----~~--~~p 131 (818)
|+|..+|..++.++..+||+....+.-|||-.|+.|-+ ..+= +. ..|..||++..++|..-- .. ++-
T Consensus 217 T~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~--~IgW----R~-a~rllV~~TDA~fH~agDgkLaGIv~pND 289 (503)
T 3v4v_B 217 TGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQE--QIGW----RN-VSRLLVFTSDDTFHTAGDGKLGGIFMPSD 289 (503)
T ss_dssp ESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHH--HHTC----CS-SEEEEEEEESSCBCCTTGGGTTTCCSCCC
T ss_pred cCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhccc--ccCC----Cc-ceEEEEEECCCCcCcCCCccccceecCCC
Confidence 99999999999999999999777777899988886542 0110 12 558889999999985211 11 122
Q ss_pred cccccccc-chhhhhhhccCCCHHHHHHHHhhcCceEEEeCCC-cchHHHHH
Q 003455 132 QMQNLDQN-ENNEAQAESRLSDAETVAKSFVQCSVSLSVICPK-QLPKLTAI 181 (818)
Q Consensus 132 ~~~~l~~~-~~~~~~~~~~l~~~e~la~~~~~~~I~lSiIsPr-klp~L~~l 181 (818)
.-|-|+.+ .-..+..++ .-++.+|++.+.+++|.+=|...+ .....++|
T Consensus 290 g~CHL~~~~~Yt~s~~~D-YPSv~ql~~kL~ennI~~IFAVt~~~~~~Y~~L 340 (503)
T 3v4v_B 290 GHCHLDSNGLYSRSTEFD-YPSVGQVAQALSAANIQPIFAVTSAALPVYQEL 340 (503)
T ss_dssp SSCCBCTTSBBGGGGGSC-CCCHHHHHHHHHHHTEEEEEEECSSSHHHHHHH
T ss_pred CCeEECCCCccccccccC-CCCHHHHHHHHHhcCCeEEEEEcccchhHHHHH
Confidence 33444321 111122222 248999999999999987665554 34444443
No 14
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=96.94 E-value=0.0077 Score=60.10 Aligned_cols=123 Identities=11% Similarity=0.076 Sum_probs=86.1
Q ss_pred hHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccCCCCCCChhhHH
Q 003455 5 FYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIA 84 (818)
Q Consensus 5 ~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG~~~~aia 84 (818)
|+.+|+++..+++.|.-+ .....++||.|.+.. +.. -......+...++..|++|.+.||+. ..++
T Consensus 38 ~~~~k~~~~~~~~~l~~~--------~~~~rv~lv~F~~~~-~~~---~~l~~~~~~~~~~~~i~~l~~~gG~~--T~~~ 103 (223)
T 2b2x_A 38 WESVIAFLNDLLKRMDIG--------PKQTQVGIVQYGENV-THE---FNLNKYSSTEEVLVAANKIVQRGGRQ--TMTA 103 (223)
T ss_dssp HHHHHHHHHHHHTTSCCS--------TTSCCEEEEEESSSE-EEE---ECTTTCCSHHHHHHHHTTCCCCCCSS--CCHH
T ss_pred HHHHHHHHHHHHHhcccC--------CCCeEEEEEEeCCCc-cEE---EecCCCCCHHHHHHHHHhhhccCCCC--ccHH
Confidence 678888999999888421 236899999997642 111 11234467899999999999887632 4588
Q ss_pred HHHHHHHhh-hccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHHHHhhc
Q 003455 85 EGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQC 163 (818)
Q Consensus 85 EGLa~AL~~-~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~~~~ 163 (818)
+||..|+.. |.. . +..+....|+.|||+.-.+.. . .+.+.+++.+.+.
T Consensus 104 ~aL~~a~~~l~~~--~---~~~~~~~~~~iillTDG~~~~------------------------~--~~~~~~~~~~~~~ 152 (223)
T 2b2x_A 104 LGIDTARKEAFTE--A---RGARRGVKKVMVIVTDGESHD------------------------N--YRLKQVIQDCEDE 152 (223)
T ss_dssp HHHHHHHHTTSSG--G---GTCCTTSEEEEEEEESSCCTT------------------------G--GGHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCc--c---cCCCCCCCeEEEEEcCCCCCC------------------------C--ccHHHHHHHHHHC
Confidence 899999975 531 0 112346778899998765432 0 1567888999999
Q ss_pred CceEEEeCC
Q 003455 164 SVSLSVICP 172 (818)
Q Consensus 164 ~I~lSiIsP 172 (818)
+|.+.+|.=
T Consensus 153 gi~v~~igv 161 (223)
T 2b2x_A 153 NIQRFSIAI 161 (223)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999998853
No 15
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=96.81 E-value=0.0034 Score=60.06 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=87.2
Q ss_pred CchhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhcccc--CCCCCC
Q 003455 1 MCIYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIP--FAGGGF 78 (818)
Q Consensus 1 m~~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~--f~GGG~ 78 (818)
|+..|+.+++++..+++.|.. ....++||.|.+.. -..+.+|.|...+..+|++|. +.|||
T Consensus 20 M~~~~~~~~~~~~~~~~~~~~----------~~~~v~lv~f~~~~------~~~~~l~~~~~~~~~~i~~l~~~~~~g~- 82 (185)
T 3n2n_F 20 VLHHWNEIYYFVEQLAHKFIS----------PQLRMSFIVFSTRG------TTLMKLTEDREQIRQGLEELQKVLPGGD- 82 (185)
T ss_dssp GGGGHHHHHHHHHHHHHHCCC----------TTEEEEEEEESSSE------EEEEEEECCHHHHHHHHHHHHTCCCCSC-
T ss_pred hhhhHHHHHHHHHHHHHHhCC----------CCcEEEEEEEecCc------eEEeccCCCHHHHHHHHHHHhhhcCCCC-
Confidence 556788888999999998832 25899999997642 224577889999999999998 45776
Q ss_pred ChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHH
Q 003455 79 NDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAK 158 (818)
Q Consensus 79 ~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~ 158 (818)
..+.+||..|+..+..... ......|+.|||+.-.+.. ....+.+..++
T Consensus 83 --T~~~~al~~a~~~l~~~~~-----~~~~~~~~iillTDG~~~~------------------------~~~~~~~~~~~ 131 (185)
T 3n2n_F 83 --TYMHEGFERASEQIYYENR-----QGYRTASVIIALTDGELHE------------------------DLFFYSEREAN 131 (185)
T ss_dssp --CCHHHHHHHHHHHHHHHHT-----TCBCEEEEEEEEECCCCCH------------------------HHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHhhccc-----cCCCCCcEEEEEcCCCCCC------------------------CcccchHHHHH
Confidence 4478888888874410000 1123678889998765422 01114567899
Q ss_pred HHhhcCceEEEeCC
Q 003455 159 SFVQCSVSLSVICP 172 (818)
Q Consensus 159 ~~~~~~I~lSiIsP 172 (818)
.+.+.+|.+-.|.=
T Consensus 132 ~~~~~gi~i~~igv 145 (185)
T 3n2n_F 132 RSRDLGAIVYAVGV 145 (185)
T ss_dssp HHHHTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEe
Confidence 99999999998854
No 16
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=96.74 E-value=0.014 Score=57.70 Aligned_cols=123 Identities=11% Similarity=0.070 Sum_probs=85.8
Q ss_pred hHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccCCCCCCChhhHH
Q 003455 5 FYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIA 84 (818)
Q Consensus 5 ~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG~~~~aia 84 (818)
|+.+|+++..+++.|.-+ .....++||+|.+..- . +-......+...++..|++|.+.||.. ..++
T Consensus 23 ~~~~k~~~~~~~~~l~~~--------~~~~~v~lv~F~~~~~-~---~~~l~~~~~~~~~~~~i~~l~~~~G~~--T~~~ 88 (213)
T 1pt6_A 23 WDSVTAFLNDLLKRMDIG--------PKQTQVGIVQYGENVT-H---EFNLNKYSSTEEVLVAAKKIVQRGGRQ--TMTA 88 (213)
T ss_dssp HHHHHHHHHHHHTTSCBS--------TTSBEEEEEEESSSEE-E---EECTTTCSSHHHHHHHHHTCCCCCCSS--CCHH
T ss_pred HHHHHHHHHHHHHhcCCC--------CCCeEEEEEEeCCCcc-E---EEeccccCCHHHHHHHHHhccCCCCCc--ccHH
Confidence 678888999999888421 2368999999986431 1 111234467899999999999887732 3488
Q ss_pred HHHHHHHhh-hccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHHHHhhc
Q 003455 85 EGLSEALMM-FSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQC 163 (818)
Q Consensus 85 EGLa~AL~~-~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~~~~ 163 (818)
+||..|+.. |.. . +..+....|..|||+.-.+..- .+.+.+++.+.+.
T Consensus 89 ~aL~~a~~~l~~~--~---~~~r~~~~~~iillTDG~~~~~--------------------------~~~~~~~~~~~~~ 137 (213)
T 1pt6_A 89 LGTDTARKEAFTE--A---RGARRGVKKVMVIVTDGESHDN--------------------------HRLKKVIQDCEDE 137 (213)
T ss_dssp HHHHHHHHTTTSG--G---GTCCTTCEEEEEEEESSCCSCS--------------------------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCc--c---cCCCCCCCeEEEEEcCCCCCCC--------------------------ccHHHHHHHHHHC
Confidence 899999975 531 0 1123467888999998755320 1456788889999
Q ss_pred CceEEEeCC
Q 003455 164 SVSLSVICP 172 (818)
Q Consensus 164 ~I~lSiIsP 172 (818)
+|.+.+|.=
T Consensus 138 gi~i~~igi 146 (213)
T 1pt6_A 138 NIQRFSIAI 146 (213)
T ss_dssp TEEEEEEEE
T ss_pred CCEEEEEEe
Confidence 999988864
No 17
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=96.64 E-value=0.0051 Score=59.71 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=83.8
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCC--CHHHHHHHhccccCCCCCCChh
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDIFLHWLSTIPFAGGGFNDA 81 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~--~~~~fl~wL~~i~f~GGG~~~~ 81 (818)
.|+.+|+++..+++.|. ...++++||.|.+..- ..+.|+. +...+...|++|.+.||| .
T Consensus 22 ~~~~~k~~~~~~~~~l~----------~~~~~v~vv~f~~~~~------~~~~l~~~~~~~~~~~~i~~l~~~~g~---T 82 (194)
T 1mf7_A 22 DFRRMKEFVSTVMEQLK----------KSKTLFSLMQYSEEFR------IHFTFKEFQNNPNPRSLVKPITQLLGR---T 82 (194)
T ss_dssp HHHHHHHHHHHHHHHHC----------CTTEEEEEEEESSSEE------EEECHHHHHHSCCHHHHHTTCCCCCSC---B
T ss_pred HHHHHHHHHHHHHHhcC----------CCCeEEEEEEecCCce------EEEecCCcCCHHHHHHHHHhCcCCCCC---c
Confidence 57888899999999985 1258999999977531 2244444 456789999999987775 4
Q ss_pred hHHHHHHHHHh-hhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHHHH
Q 003455 82 AIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSF 160 (818)
Q Consensus 82 aiaEGLa~AL~-~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~ 160 (818)
.+.+||..|+. +|.. . ...+....|..|||+.-.+..-+. +.+++++.+
T Consensus 83 ~~~~aL~~a~~~l~~~--~---~~~r~~~~~~iillTDG~~~~d~~-------------------------~~~~~~~~~ 132 (194)
T 1mf7_A 83 HTATGIRKVVRELFNI--T---NGARKNAFKILVVITDGEKFGDPL-------------------------GYEDVIPEA 132 (194)
T ss_dssp CHHHHHHHHHHTTTSG--G---GTCCTTSEEEEEEEESSCCBSCSS-------------------------CGGGTHHHH
T ss_pred hHHHHHHHHHHHhcCc--c---cCCCCCCCeEEEEEcCCCCCCCch-------------------------hhHHHHHHH
Confidence 68899999995 6641 0 112345778899999877652111 223456778
Q ss_pred hhcCceEEEeCC
Q 003455 161 VQCSVSLSVICP 172 (818)
Q Consensus 161 ~~~~I~lSiIsP 172 (818)
.+.+|.+..|.=
T Consensus 133 ~~~gi~v~~igv 144 (194)
T 1mf7_A 133 DREGVIRYVIGV 144 (194)
T ss_dssp HHTTEEEEEEEE
T ss_pred HHCCCEEEEEEe
Confidence 889999888854
No 18
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=96.55 E-value=0.0061 Score=59.02 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=83.9
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCC--CHHHHHHHhccccCCCCCCChh
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDIFLHWLSTIPFAGGGFNDA 81 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~--~~~~fl~wL~~i~f~GGG~~~~ 81 (818)
.|+.+++++..+++.|. .....++||+|.+.. ...+.++. +...++.+|+.|.+.||| .
T Consensus 26 ~~~~~~~~~~~~~~~l~----------~~~~~v~lv~f~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~g~---T 86 (198)
T 1n3y_A 26 NFATMMNFVRAVISQFQ----------RPSTQFSLMQFSNKF------QTHFTFEEFRRSSNPLSLLASVHQLQGF---T 86 (198)
T ss_dssp HHHHHHHHHHHHHTTSC----------TTTEEEEEEEESSSE------EEEECHHHHHHCSSGGGGGTTCCCCCSC---B
T ss_pred HHHHHHHHHHHHHHhcC----------CCCcEEEEEEeCCCc------cEEEecCccCCHHHHHHHHhcCcCCCCC---c
Confidence 57777889988888885 235899999998862 12233332 335688899999887764 5
Q ss_pred hHHHHHHHHH-hhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHHHH
Q 003455 82 AIAEGLSEAL-MMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSF 160 (818)
Q Consensus 82 aiaEGLa~AL-~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~ 160 (818)
.+.+||..|+ .+|.. . +..+....|..|||+.-.+..-+ .+.+.+++.+
T Consensus 87 ~~~~al~~a~~~l~~~--~---~~~r~~~~~~iillTDG~~~~~~-------------------------~~~~~~~~~~ 136 (198)
T 1n3y_A 87 YTATAIQNVVHRLFHA--S---YGARRDAAKILIVITDGKKEGDS-------------------------LDYKDVIPMA 136 (198)
T ss_dssp CHHHHHHHHHTTTTSG--G---GTCCTTSEEEEEEEESSCCBSCS-------------------------SCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCc--c---cCCCCCCceEEEEECCCCCCCCc-------------------------ccHHHHHHHH
Confidence 6889999999 66641 1 11134567888999887654211 2567788899
Q ss_pred hhcCceEEEeCC
Q 003455 161 VQCSVSLSVICP 172 (818)
Q Consensus 161 ~~~~I~lSiIsP 172 (818)
.+.+|.+.+|.=
T Consensus 137 ~~~gi~i~~igv 148 (198)
T 1n3y_A 137 DAAGIIRYAIGV 148 (198)
T ss_dssp HHTTCEEEEEEE
T ss_pred HHCCCEEEEEEc
Confidence 999999988753
No 19
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=96.23 E-value=0.034 Score=54.55 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=71.3
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCcee-eccCCCCHHHHHHHhccccCCCCC-CChh
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQ-RSGWTKDVDIFLHWLSTIPFAGGG-FNDA 81 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~-~~g~T~~~~~fl~wL~~i~f~GGG-~~~~ 81 (818)
.|+.+|+++.-+++.|...+ ....++||.|.+..-. .+. ....|.|...+...|++|.+.++. -...
T Consensus 32 ~~~~~k~~~~~~i~~l~~~~--------~~~~v~lv~f~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~g~T 100 (223)
T 1q0p_A 32 NFTGAKKSLVNLIEKVASYG--------VKPRYGLVTYATYPKI---WVKVSEADSSNADWVTKQLNEINYEDHKLKSGT 100 (223)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--------CCCEEEEEEESSSEEE---EECTTSGGGGCHHHHHHHHHTCCTTSCSCTTCC
T ss_pred HHHHHHHHHHHHHHHHhcCC--------CCceEEEEEecCccce---eeccccCCCCCHHHHHHHHHhcccccccCCCCc
Confidence 78889999999998885422 2478999999875421 111 125567889999999999986431 1235
Q ss_pred hHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCC
Q 003455 82 AIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 122 (818)
Q Consensus 82 aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~ 122 (818)
.+.+||..|+.+|... ....+.......|..|||+.-.+.
T Consensus 101 ~~~~aL~~a~~~l~~~-~~~~~~~~~~~~~~iillTDG~~~ 140 (223)
T 1q0p_A 101 NTKKALQAVYSMMSWP-DDVPPEGWNRTRHVIILMTDGLHN 140 (223)
T ss_dssp CHHHHHHHHHHHHCCT-TSSCCTTGGGCEEEEEEEECSCCC
T ss_pred cHHHHHHHHHHHhhcc-ccccccccccCCeEEEEECCCCCC
Confidence 6899999999877411 111111123567778888887654
No 20
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=95.90 E-value=0.027 Score=53.55 Aligned_cols=122 Identities=18% Similarity=0.103 Sum_probs=83.6
Q ss_pred CchhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccC--CCCCC
Q 003455 1 MCIYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPF--AGGGF 78 (818)
Q Consensus 1 m~~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f--~GGG~ 78 (818)
|...+..+++++..+++.|.. ....++||.|.+.. ...+.||.+...+..+|++|.. .+||
T Consensus 19 M~~~~~~~~~~~~~~~~~~~~----------~~~~v~lv~f~~~~------~~~~~~~~~~~~~~~~l~~l~~~~~~g~- 81 (182)
T 1shu_X 19 VANNWIEIYNFVQQLAERFVS----------PEMRLSFIVFSSQA------TIILPLTGDRGKISKGLEDLKRVSPVGE- 81 (182)
T ss_dssp GGGGHHHHHHHHHHHHHHCCC----------TTEEEEEEEESSSE------EEEEEEECCHHHHHHHHHHHHTCCCCSC-
T ss_pred cccCHHHHHHHHHHHHHHhcC----------CCceEEEEEeCCCc------eEEECCCCCHHHHHHHHHhcccCCCCCC-
Confidence 444444455788888888732 35899999997642 2346678899999999988874 3443
Q ss_pred ChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHH
Q 003455 79 NDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAK 158 (818)
Q Consensus 79 ~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~ 158 (818)
..+.+||..|+.++... ......|..|||+.-.+..- .....+.+++
T Consensus 82 --T~~~~al~~a~~~l~~~-------~~~~~~~~iiliTDG~~~~~------------------------~~~~~~~~~~ 128 (182)
T 1shu_X 82 --TYIHEGLKLANEQIQKA-------GGLKTSSIIIALTDGKLDGL------------------------VPSYAEKEAK 128 (182)
T ss_dssp --CCHHHHHHHHHHHHHHH-------TGGGSCEEEEEEECCCCCTT------------------------HHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHhc-------cCCCCCeEEEEECCCCcCCC------------------------CchhHHHHHH
Confidence 56889999999877411 12356788899988765320 0013456788
Q ss_pred HHhhcCceEEEeCC
Q 003455 159 SFVQCSVSLSVICP 172 (818)
Q Consensus 159 ~~~~~~I~lSiIsP 172 (818)
.+.+.+|.+.+|.=
T Consensus 129 ~~~~~~i~i~~igv 142 (182)
T 1shu_X 129 ISRSLGASVYCVGV 142 (182)
T ss_dssp HHHHTTCEEEEEEC
T ss_pred HHHhCCCEEEEEeC
Confidence 88999999988864
No 21
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=95.86 E-value=0.04 Score=54.09 Aligned_cols=101 Identities=10% Similarity=0.069 Sum_probs=71.0
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccCCCCCCChhhH
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAI 83 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG~~~~ai 83 (818)
-|+.+|+++..+++.|.-+ ...+.++||.|.+..-. +-.+..+.+...++..|++|++.||+. ..+
T Consensus 38 ~~~~~k~~~~~~~~~l~~~--------~~~~rv~vv~fs~~~~~----~~~l~~~~~~~~~~~~i~~l~~~gg~~--T~~ 103 (199)
T 3zqk_A 38 DFNRSKEFMEEVIQRMDVG--------QDSIHVTVLQYSYMVTV----EYPFSEAQSKGDILQRLREIRYQGGNR--TNT 103 (199)
T ss_dssp HHHHHHHHHHHHHHHSCBS--------TTSBEEEEEEESSSEEE----EECTTSCCCHHHHHHHHHHCCCCCCSC--CCH
T ss_pred HHHHHHHHHHHHHHhcCCC--------CCceEEEEEEECCcccE----EEecCCcCCHHHHHHHHHhCcCCCCCc--ChH
Confidence 4788889999999999532 23689999999875321 111223458999999999999998743 347
Q ss_pred HHHHHHHHh-hhccCCCCCCCCCCCCCccEEEEeecCCCCC
Q 003455 84 AEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHP 123 (818)
Q Consensus 84 aEGLa~AL~-~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~ 123 (818)
++||..|+. +|. .. ...+....|..|||+.-.+..
T Consensus 104 ~~aL~~a~~~l~~--~~---~g~r~~~~~~iillTDG~~~d 139 (199)
T 3zqk_A 104 GLALRYLSDHSFL--VS---QGDREQAPNLVYMVTGNPASD 139 (199)
T ss_dssp HHHHHHCCCCCTC--GG---GTCCTTSCEEEEEEECSCCSS
T ss_pred HHHHHHHHHHhhC--cc---cCCCCCCCeEEEEEeCCCCch
Confidence 888888886 453 11 112346788999999886543
No 22
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=95.68 E-value=0.044 Score=56.59 Aligned_cols=121 Identities=15% Similarity=0.125 Sum_probs=85.5
Q ss_pred hh-HHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCC----CHHHHHHHhcccc---CCC
Q 003455 4 YF-YAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DVDIFLHWLSTIP---FAG 75 (818)
Q Consensus 4 Y~-~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~----~~~~fl~wL~~i~---f~G 75 (818)
-| +.+++++.-+++.|.-++ ..+.++||+|.+.. -..+.++. +...++..|++|. ..|
T Consensus 35 ~~~~~~k~~~~~lv~~l~~~~--------~~~rvglv~Fs~~~------~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~~ 100 (266)
T 4hqo_A 35 NWITKVIPMLNGLINSLSLSR--------DTINLYMNLFGSYT------TELIRLGSGQSIDKRQALSKVTELRKTYTPY 100 (266)
T ss_dssp HHHHTHHHHHHHHHHTCCBCT--------TSEEEEEEEESSSE------EEEECTTSHHHHCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHcccCC--------CCcEEEEEEecCCc------ceEEecCCCCccCHHHHHHHHHHhhhccCCC
Confidence 35 467789999999985322 35899999998752 12234443 4788999999997 666
Q ss_pred CCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHH
Q 003455 76 GGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAET 155 (818)
Q Consensus 76 GG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~ 155 (818)
|| ..+++||..|..+|. ..+ .+....|..|||+.-.|.. + .++..
T Consensus 101 G~---T~~~~AL~~a~~~l~--~~~----~r~~~~~~iIllTDG~~~d---~-----------------------~~~~~ 145 (266)
T 4hqo_A 101 GT---TSMTAALDEVQKHLN--DRV----NREKAIQLVILMTDGVPNS---K-----------------------YRALE 145 (266)
T ss_dssp SC---CCHHHHHHHHHHHHH--TTC----SCTTSEEEEEEEECSCCSC---H-----------------------HHHHH
T ss_pred CC---CCHHHHHHHHHHHHh--hcc----ccCCCCeEEEEEccCCCCC---c-----------------------hHHHH
Confidence 65 457889999988886 111 2345678999998765541 0 25678
Q ss_pred HHHHHhhcCceEEEeCCC
Q 003455 156 VAKSFVQCSVSLSVICPK 173 (818)
Q Consensus 156 la~~~~~~~I~lSiIsPr 173 (818)
.|+.+.+.+|.+.+|.=-
T Consensus 146 ~a~~l~~~gi~i~~iGiG 163 (266)
T 4hqo_A 146 VANKLKQRNVRLAVIGIG 163 (266)
T ss_dssp HHHHHHHTTCEEEEEECS
T ss_pred HHHHHHHCCCEEEEEecC
Confidence 889999999999988643
No 23
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=95.32 E-value=0.0071 Score=58.35 Aligned_cols=94 Identities=14% Similarity=0.105 Sum_probs=63.5
Q ss_pred hhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccCCCCCCChhh
Q 003455 3 IYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAA 82 (818)
Q Consensus 3 ~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG~~~~a 82 (818)
..|+..|+.+.-+++.+. .....++||.|.+... -....+|.+...+..+|+.+...|| ..
T Consensus 21 ~~~~~~k~~~~~~~~~~~----------~~~~~v~lv~f~~~~~-----~~~~~~~~~~~~~~~~i~~l~~~g~----T~ 81 (189)
T 2x31_A 21 ARLSEAKGAVELLLGRAY----------AARDHVSLITFRGTAA-----QVLLQPSRSLTQTKRQLQGLPGGGG----TP 81 (189)
T ss_dssp --CHHHHHHHHHHHHHSC----------TTTSCCCEEEESBSCC-----CBCTTTCSCHHHHHHHHHHCCCCBC----CC
T ss_pred hHHHHHHHHHHHHHHHhc----------CCCcEEEEEEECCCCc-----eEecCCCCCHHHHHHHHhcCCCCCC----CC
Confidence 456777777777776551 1246889999986332 1245688899999999999986443 35
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCC
Q 003455 83 IAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 122 (818)
Q Consensus 83 iaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~ 122 (818)
+.+||..|+.++.. . ......|..|||+.-.|.
T Consensus 82 ~~~al~~a~~~l~~--~-----~~~~~~~~ivliTDG~~~ 114 (189)
T 2x31_A 82 LASGMEMAMVTAKQ--A-----RSRGMTPTIALLTDGRGN 114 (189)
T ss_dssp CHHHHHHHHHHHHT--C-----TTTCSSEEEEECCBSCCS
T ss_pred HHHHHHHHHHHHHh--c-----cCCCCceEEEEECCCCCC
Confidence 67889999988851 1 112456788888876554
No 24
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=95.31 E-value=0.078 Score=58.80 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=71.7
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCcee-eccCCCCHHHHHHHhccccCCCCC-CChh
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQ-RSGWTKDVDIFLHWLSTIPFAGGG-FNDA 81 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~-~~g~T~~~~~fl~wL~~i~f~GGG-~~~~ 81 (818)
.|+.+|+.|.-+++.|...+ ...+++||+|.+..- ..+. ....|.|...++..|++|.+.++. ....
T Consensus 18 ~~~~~k~~~~~~~~~l~~~~--------~~~~v~lv~f~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~g~T 86 (497)
T 1rrk_A 18 NFTGAKKVLVNLIEKVASYG--------VKPRYGLVTYATYPK---IWVKVSEADSSNADWVTKQLNEINYEDHKLKSGT 86 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--------CCCEEEEEEESSSEE---EEECTTSGGGGCHHHHHHHHHHCCGGGSCCTTCC
T ss_pred hHHHHHHHHHHHHHHhhccC--------CCceEEEEEecCCce---EeeccccccccCHHHHHHHHHhCcCccccccCcc
Confidence 57888889999999884322 247899999985321 1111 125678999999999999986542 2237
Q ss_pred hHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCC
Q 003455 82 AIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP 123 (818)
Q Consensus 82 aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~ 123 (818)
.+++||..|+.+|... ....+.......|..|||+.-.+..
T Consensus 87 ~~~~al~~a~~~l~~~-~~~~~~~~~~~~~~iillTDG~~~~ 127 (497)
T 1rrk_A 87 NTKKALQAVYSMMSWP-DDVPPEGWNRTRHVIILMTDGLHNM 127 (497)
T ss_dssp CHHHHHHHHHHHHCCC-------CGGGCEEEEEEEECSCCCS
T ss_pred CHHHHHHHHHHHhhhh-hccccccccccceEEEEEeCCCccc
Confidence 7899999999877411 1111222245778899999876543
No 25
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=95.10 E-value=0.041 Score=64.22 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=71.5
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCC----CHHHHHHHhccccC----CC
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DVDIFLHWLSTIPF----AG 75 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~----~~~~fl~wL~~i~f----~G 75 (818)
-|+.+|+.+..+|+.|..++ ..+.+|||+|.+.. ...+.+|. |.+.++..|++|++ .|
T Consensus 260 ~~~~~k~~~~~~i~~l~~~~--------~~~rv~lv~f~~~~------~~~~~l~~~~~~~~~~~~~~i~~l~~~~~~~~ 325 (741)
T 3hrz_D 260 DFTGAKKCLVNLIEKVASYG--------VKPRYGLVTYATYP------KIWVKVSEADSSNADWVTKQLNEINYEDHKLK 325 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--------CCCEEEEEEESSSE------EEEECTTSGGGGCHHHHHHHHTTCCGGGGSSS
T ss_pred chHHHHHHHHHHHHhhhccC--------CCceEEEEEeccCC------ceeEeecccCCcCHHHHHHHHHhcccccccCC
Confidence 47888899999999986422 25799999997642 22344554 89999999999998 55
Q ss_pred CCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCC
Q 003455 76 GGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 122 (818)
Q Consensus 76 GG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~ 122 (818)
|| .++++||..|+.+|... ....+..+....|..|||+.--+.
T Consensus 326 gg---T~~~~aL~~a~~~l~~~-~~~~~~~~~~~~~~iillTDG~~n 368 (741)
T 3hrz_D 326 SG---TNTKKALQAVYSMMSWP-DDVPPEGWNRTRHVIILMTDGLHN 368 (741)
T ss_dssp CC---CCHHHHHHHHHHHHCCC---CCCTTGGGEEEEEEEEECSCCC
T ss_pred CC---hHHHHHHHHHHHHHhhh-hhccccchhccCeEEEEECCCccc
Confidence 54 56899999999877311 112223345678888999987554
No 26
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=94.91 E-value=0.085 Score=54.63 Aligned_cols=119 Identities=9% Similarity=0.145 Sum_probs=80.9
Q ss_pred hHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCC----CHHHHHHHhcccc---CCCCC
Q 003455 5 FYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK----DVDIFLHWLSTIP---FAGGG 77 (818)
Q Consensus 5 ~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~----~~~~fl~wL~~i~---f~GGG 77 (818)
++.+++++.-+++.|..+ ...+.++||+|.+.. -..+.++. +...++..|++|. +.|||
T Consensus 40 ~~~~k~~~~~~v~~l~~~--------~~~~rvglv~Fs~~~------~~~~~l~~~~~~~~~~l~~~i~~l~~~~~~~G~ 105 (281)
T 4hqf_A 40 VNHAVPLAMKLIQQLNLN--------DNAIHLYASVFSNNA------REIIRLHSDASKNKEKALIIIKSLLSTNLPYGK 105 (281)
T ss_dssp HHHHHHHHHHHHTTCCCC--------TTSEEEEEEEEETTE------EEEEEECSSCSSCHHHHHHHHHHHHHTTGGGCS
T ss_pred HHHHHHHHHHHHHHhccC--------CCCcEEEEEEcCCCc------eEEEEccccCccCHHHHHHHHHHHhhccCCCCC
Confidence 377778888888888532 236899999998642 11223333 4788888888887 56665
Q ss_pred CChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHH
Q 003455 78 FNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVA 157 (818)
Q Consensus 78 ~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la 157 (818)
..+++||..|+..|. ... .+....|..|||+.-.+.. . .+....|
T Consensus 106 ---T~~~~aL~~a~~~l~--~~~----~r~~~~~~iillTDG~~~d-------------------------~-~~~~~~~ 150 (281)
T 4hqf_A 106 ---TSLTDALLQVRKHLN--DRI----NRENANQLVVILTDGIPDS-------------------------I-QDSLKES 150 (281)
T ss_dssp ---CCHHHHHHHHHHHHH--TSC----CCTTCEEEEEEEESSCCSC-------------------------H-HHHHHHH
T ss_pred ---ccHHHHHHHHHHHHH--hcc----CCCCCCEEEEEEecCCCCC-------------------------c-HHHHHHH
Confidence 458889999987764 111 2235688889988765431 0 2566788
Q ss_pred HHHhhcCceEEEeCC
Q 003455 158 KSFVQCSVSLSVICP 172 (818)
Q Consensus 158 ~~~~~~~I~lSiIsP 172 (818)
+.+.+.+|.+-+|.=
T Consensus 151 ~~l~~~gv~i~~igi 165 (281)
T 4hqf_A 151 RKLSDRGVKIAVFGI 165 (281)
T ss_dssp HHHHHTTCEEEEEEE
T ss_pred HHHHHCCCEEEEEeC
Confidence 888899999888753
No 27
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=93.89 E-value=0.12 Score=64.20 Aligned_cols=120 Identities=13% Similarity=0.089 Sum_probs=87.0
Q ss_pred hHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCC--CHHHHHHHhccccCCCCCCChhh
Q 003455 5 FYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDIFLHWLSTIPFAGGGFNDAA 82 (818)
Q Consensus 5 ~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~--~~~~fl~wL~~i~f~GGG~~~~a 82 (818)
|+.+|+++..+++.|.. ..+.+|||+|.+.. -..+.++. |...++..+++|+..||| .+
T Consensus 148 f~~~k~fv~~lv~~~~~----------~~~rVglV~Fs~~~------~~~~~lt~~~~~~~l~~ai~~i~~~gG~---T~ 208 (1095)
T 3k6s_A 148 FATMMNFVRAVISQFQR----------PSTQFSLMQFSNKF------QTHFTFEEFRRSSNPLSLLASVHQLQGF---TY 208 (1095)
T ss_dssp HHHHHHHHHHHHHSSCS----------SSEEEEEEEESSSE------EEEECSHHHHSCSCGGGGTTTCCCCCSC---BC
T ss_pred HHHHHHHHHHHHHhccc----------cccEEEEEEECCeE------EEEecCcccCCHHHHHHHHhhhhcccCC---Ch
Confidence 78888999999999951 25899999997642 22345553 666788889999998875 67
Q ss_pred HHHHHHHHHh-hhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHHHHh
Q 003455 83 IAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFV 161 (818)
Q Consensus 83 iaEGLa~AL~-~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~~ 161 (818)
+++||..|+. +|. .. +..+....|..|||+.-.+..-+ .+.+.+|+.+.
T Consensus 209 ~g~AL~~a~~~lf~--~~---~g~R~~~~kviIllTDG~~~~d~-------------------------~~~~~~a~~~r 258 (1095)
T 3k6s_A 209 TATAIQNVVHRLFH--AS---YGARRDAAKILIVITDGKKEGDS-------------------------LDYKDVIPMAD 258 (1095)
T ss_dssp HHHHHHHHHTTTTS--TT---TTCCSSSEEEEEEEESSCCBSCS-------------------------SCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc--cc---ccCCCCCCeEEEEEeCCCcCCCc-------------------------hhHHHHHHHHH
Confidence 8999999996 553 11 11235678899999876553211 26778889999
Q ss_pred hcCceEEEeCCC
Q 003455 162 QCSVSLSVICPK 173 (818)
Q Consensus 162 ~~~I~lSiIsPr 173 (818)
+.+|.+-.|.=.
T Consensus 259 ~~GI~i~aIGVG 270 (1095)
T 3k6s_A 259 AAGIIRYAIGVG 270 (1095)
T ss_dssp HHCEEECCEEBS
T ss_pred HCCCEEEEEecc
Confidence 999998887654
No 28
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=93.35 E-value=0.3 Score=54.41 Aligned_cols=110 Identities=13% Similarity=0.145 Sum_probs=69.0
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccCCCCC-CChhh
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGG-FNDAA 82 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG-~~~~a 82 (818)
-|+..|+.|..+++.|.... ...+++||+|.+..-. .+.+ ....+.|..+++..|++|.+.++. .....
T Consensus 26 ~~~~~k~~~~~l~~~l~~~~--------~~~rv~lv~f~~~~~~-~~~l-~~~~~~~~~~~~~~l~~l~~~~~~~~ggT~ 95 (509)
T 2odp_A 26 DFLIFKESASLMVDRIFSFE--------INVSVAIITFASEPKV-LMSV-LNDNSRDMTEVISSLENANYKDHENGTGTN 95 (509)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--------CCEEEEEEEESSSEEE-EECT-TSGGGGCHHHHHHHHHTCCGGGGTTCCSCC
T ss_pred hHHHHHHHHHHHHHHhhccC--------CCceEEEEEccCCCce-eEec-cCCCCCCHHHHHHHHHhcccccCCCCCCcc
Confidence 46788889999999884311 2489999999763311 1111 112344999999999999998633 13367
Q ss_pred HHHHHHHHHhhhccCCC--CCCCCCCCCCccEEEEeecCCCCC
Q 003455 83 IAEGLSEALMMFSVAPN--GSQNQQNVDGQRHCILVAASNPHP 123 (818)
Q Consensus 83 iaEGLa~AL~~~~~~~~--~~~~~~~~~~qkhCILi~nSpP~~ 123 (818)
+++||..|+.+|..... +..........|..|||+.-.+..
T Consensus 96 ~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~ 138 (509)
T 2odp_A 96 TYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNM 138 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCS
T ss_pred HHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccC
Confidence 88889999987741000 000000113567889998876543
No 29
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=93.07 E-value=0.018 Score=63.14 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=15.0
Q ss_pred HHHHHHHHhhc-CceEEEeCC
Q 003455 153 AETVAKSFVQC-SVSLSVICP 172 (818)
Q Consensus 153 ~e~la~~~~~~-~I~lSiIsP 172 (818)
.+.+++.|.+. +|++.++..
T Consensus 20 ~~~~~~~F~~~~gi~V~~~~~ 40 (449)
T 3iot_A 20 LAEVGKKFEKDTGIKVTVEHP 40 (449)
T ss_dssp HHHHHHHHHHHHSCCEEEECC
T ss_pred HHHHHHHHhhccCCEEEEEec
Confidence 56777888665 888888874
No 30
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=92.46 E-value=0.89 Score=52.28 Aligned_cols=123 Identities=20% Similarity=0.284 Sum_probs=74.0
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCC---------CCcCceeeccCC-CCHHHHHHHhcc-cc
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGS---------YCACLVQRSGWT-KDVDIFLHWLST-IP 72 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~---------~~~~~v~~~g~T-~~~~~fl~wL~~-i~ 72 (818)
.|+..+++|.-+++-.. .....-+.|||+|++... |..++|-. ..+ .+.+.+ .-|+. |.
T Consensus 30 rl~~ak~~i~~~i~~ki--------~~~~~D~vGlv~f~~~~~~~plt~d~~y~~i~vl~-~l~~~~~~~l-~~l~~~l~ 99 (565)
T 1jey_B 30 PFEQAKKVITMFVQRQV--------FAENKDEIALVLFGTDGTDNPLSGGDQYQNITVHR-HLMLPDFDLL-EDIESKIQ 99 (565)
T ss_dssp HHHHHHHHHHHHHHHHH--------HTTCCCEEEEEEESCSSCBSTTCTTTCSTTEEEEE-EEECCCHHHH-HHHHTTCC
T ss_pred cHHHHHHHHHHHHHHHh--------cCCCCCEEEEEEEccCCCCCccccccCCCceEEee-cCCCCCHHHH-HHHHhhcc
Confidence 34555666665555310 011347899999998762 22222221 222 344444 45665 53
Q ss_pred CCCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecC-CCCCCCCCCcCcccccccccchhhhhhhccCC
Q 003455 73 FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS-NPHPLPTPVYRPQMQNLDQNENNEAQAESRLS 151 (818)
Q Consensus 73 f~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nS-pP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~ 151 (818)
+|....+|.+||..|+.+|. .... ......|+.||+++- +|+. -.
T Consensus 100 ---~~~~~t~i~~al~~A~~~l~--~~~~---~~k~~~krIiLlTDg~~~~~--------------------------~~ 145 (565)
T 1jey_B 100 ---PGSQQADFLDALIVSMDVIQ--HETI---GKKFEKRHIEIFTDLSSRFS--------------------------KS 145 (565)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHH--HHSS---SSCCSEEEEEEECCCCSCCC--------------------------CT
T ss_pred ---CCCccccHHHHHHHHHHHHH--HHhh---cccccccEEEEEeCCCCCCC--------------------------HH
Confidence 23345779999999999995 1100 112246888888854 3432 02
Q ss_pred CHHHHHHHHhhcCceEE-Ee
Q 003455 152 DAETVAKSFVQCSVSLS-VI 170 (818)
Q Consensus 152 ~~e~la~~~~~~~I~lS-iI 170 (818)
+++++|+.+.+.||.|. ||
T Consensus 146 ~~~~~a~~l~~~gI~i~~vi 165 (565)
T 1jey_B 146 QLDIIIHSLKKCDISLQFFL 165 (565)
T ss_dssp THHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHhcCcEEEEEe
Confidence 78899999999999999 66
No 31
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=91.87 E-value=0.26 Score=47.46 Aligned_cols=96 Identities=8% Similarity=0.016 Sum_probs=65.3
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCC--CHHHHHHHhccccCCCCCCChh
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTK--DVDIFLHWLSTIPFAGGGFNDA 81 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~--~~~~fl~wL~~i~f~GGG~~~~ 81 (818)
-|+..++++..+++.|. + ..+.++||.|.+..- ..+.|+. +...+...+++|++.+|| .
T Consensus 19 ~~~~~k~~~~~~~~~l~--~--------~~~rv~vv~fs~~~~------~~~~l~~~~~~~~~~~~~~~i~~~~g~---T 79 (179)
T 1mjn_A 19 EFQKILDFMKDVMKKCS--N--------TSYQFAAVQFSTSYK------TEFDFSDYVKRKDPDALLKHVKHMLLL---T 79 (179)
T ss_dssp HHHHHHHHHHHHHHHTT--T--------SSEEEEEEEESSSEE------EEECHHHHHHHCCHHHHHTTCCCCCBC---C
T ss_pred HHHHHHHHHHHHHHHhC--C--------CCeEEEEEEECCcee------EEEcCcccCCHHHHHHHHHhcccCCCC---C
Confidence 47888889999999882 1 347999999986431 1244443 223466778888887764 5
Q ss_pred hHHHHHHHHHh-hhccCCCCCCCCCCCCCccEEEEeecCCCCC
Q 003455 82 AIAEGLSEALM-MFSVAPNGSQNQQNVDGQRHCILVAASNPHP 123 (818)
Q Consensus 82 aiaEGLa~AL~-~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~ 123 (818)
++++||..|+. +|.. . +..+....|.+||++.-.+..
T Consensus 80 ~~~~aL~~a~~~~~~~--~---~g~r~~~~~~iillTDG~~~~ 117 (179)
T 1mjn_A 80 NTFGAINYVATEVFRE--E---LGARPDATKVLIIITDGEATD 117 (179)
T ss_dssp CHHHHHHHHHHHTSSG--G---GTCCTTSEEEEEEEESSCCSS
T ss_pred hHHHHHHHHHHHhccc--c---cCCCCCCCeEEEEEcCCCCCC
Confidence 78999999994 7741 1 112345788999999876653
No 32
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=90.31 E-value=1.4 Score=49.49 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=63.3
Q ss_pred hhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccC--------CCCHHHHHHHhccccCCC
Q 003455 4 YFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGW--------TKDVDIFLHWLSTIPFAG 75 (818)
Q Consensus 4 Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~--------T~~~~~fl~wL~~i~f~G 75 (818)
-|+..|+-+.-+|+.+.. ...++||.|.+..-. .+.+ ..+...+..+|++|...|
T Consensus 96 rl~~ak~a~~~ll~~L~~-----------~drv~lV~Fs~~a~~------~~p~t~~l~~~~~~~~~~l~~~I~~L~~~G 158 (464)
T 4fx5_A 96 KMMAAKEATKVAIDTLTD-----------GAFFAVVAGTEGARV------VYPTGGQLLRADYQSRAAAKEAVGRLHANG 158 (464)
T ss_dssp HHHHHHHHHHHHHHHSCT-----------TCEEEEEEESSSEEE------EESSSSSCEECSHHHHHHHHHHHHTCCCCS
T ss_pred hHHHHHHHHHHHHHhCCC-----------CCEEEEEEEcCceEE------EecCCcccccCCHHHHHHHHHHHHcCCCCC
Confidence 366777777777777742 357999999765321 2232 368899999999999644
Q ss_pred CCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCC
Q 003455 76 GGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH 122 (818)
Q Consensus 76 GG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~ 122 (818)
| ..+.+||..|+.+|. . .....|+.|||+.--+.
T Consensus 159 -g---T~l~~aL~~A~~~l~--~-------~~~~~~~IILLTDG~~~ 192 (464)
T 4fx5_A 159 -G---TAMGRWLAQAGRIFD--T-------APSAIKHAILLTDGKDE 192 (464)
T ss_dssp -C---CCHHHHHHHHHHHHT--T-------CTTSEEEEEEEESSCCT
T ss_pred -C---CcHHHHHHHHHHHHh--c-------CCCCCCEEEEEcCCCCC
Confidence 3 558999999999985 1 22456888999887654
No 33
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=88.55 E-value=0.77 Score=47.91 Aligned_cols=80 Identities=11% Similarity=0.080 Sum_probs=58.0
Q ss_pred CchhhHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCCCcCceeeccCCCCHHHHHHHhccccCCCCCCCh
Q 003455 1 MCIYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFND 80 (818)
Q Consensus 1 m~~Y~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG~~~ 80 (818)
|+.=|+..|+.|.-++..|.... ..++++||.|+.....- .+-.-.||++. .+..+|+.|.. ||+-.
T Consensus 147 M~~kl~~vk~al~~Ll~sl~~~~--------~~~~VavV~F~~~~~~~--~~ll~pfT~~~-~~~~~l~~L~a-gG~Tp- 213 (242)
T 3rag_A 147 MRDKIPTVREAVRDLALSLKVRS--------GPLAVSVIAFPGKGEEA--TRLVQPFSSEV-NVAALEAELVA-RGGTP- 213 (242)
T ss_dssp GTTTHHHHHHHHHHHHHHHTTSS--------SCEEEEEEEESCSTTCS--CEEEEEEESSC-CHHHHHHHCCC-CSCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhccC--------CCcEEEEEEECCCCccc--eeecCCCCChH-HHHHHHhhCCC-CCCCc-
Confidence 33346777888888888885321 25899999999876522 22224889998 88899999974 66533
Q ss_pred hhHHHHHHHHHhhhc
Q 003455 81 AAIAEGLSEALMMFS 95 (818)
Q Consensus 81 ~aiaEGLa~AL~~~~ 95 (818)
+++||..|+.+|+
T Consensus 214 --lg~AL~~A~~~~~ 226 (242)
T 3rag_A 214 --TGPAIDHAADLLL 226 (242)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHH
Confidence 8899999998885
No 34
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=87.20 E-value=2.4 Score=49.31 Aligned_cols=110 Identities=20% Similarity=0.152 Sum_probs=65.7
Q ss_pred cceEEEEEEccCCC-----CCcCceeeccCCCCHHHHHHHhcccc---------CCCCCCChhhHHHHHHHHHhhhccCC
Q 003455 33 NVELSLVTFNTHGS-----YCACLVQRSGWTKDVDIFLHWLSTIP---------FAGGGFNDAAIAEGLSEALMMFSVAP 98 (818)
Q Consensus 33 ~~~yaLVvf~~~~~-----~~~~~v~~~g~T~~~~~fl~wL~~i~---------f~GGG~~~~aiaEGLa~AL~~~~~~~ 98 (818)
.-+.|||+|++... |..++|.+.==..+...+..+.+-+. ..|. ....+|++||..|+.+|. .
T Consensus 80 ~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~~~~ik~l~~l~~~~~~~~~~~~~g~-~~~t~l~daL~~a~~~f~--~ 156 (609)
T 1jey_A 80 RDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQDMMGH-GSDYSLSEVLWVCANLFS--D 156 (609)
T ss_dssp CCEEEEEEESCSSCBSTTCCTTEEEEEEEECCCHHHHHHHHTTSHHHHHHHHHHHHCC-SCCCCHHHHHHHHHHHHH--T
T ss_pred CCeEEEEEEccCCCCCcCCCCCeEEEecCCCCCHHHHHHHHHHhhcccchhhhhhcCC-CCCCCHHHHHHHHHHHHH--h
Confidence 47899999999882 33334433111123333332222221 1121 234789999999999996 1
Q ss_pred CCCCCCCCCCCccEEEEeecC-CCCCCCCCCcCcccccccccchhhhhhhccCCCHHHHHHHHhhcCceEEEeC
Q 003455 99 NGSQNQQNVDGQRHCILVAAS-NPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVIC 171 (818)
Q Consensus 99 ~~~~~~~~~~~qkhCILi~nS-pP~~lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~~~~~I~lSiIs 171 (818)
. ......|+.||+++- +|+.-- ... ..+++.+|+.+.+.||.|-+|-
T Consensus 157 ~-----~~k~~~k~IiL~TDg~~p~~~~-------------------~~~--~~~~~~~a~~l~~~gI~i~~ig 204 (609)
T 1jey_A 157 V-----QFKMSHKRIMLFTNEDNPHGND-------------------SAK--ASRARTKAGDLRDTGIFLDLMH 204 (609)
T ss_dssp C-----SSCEEEEEEEEEESCSCTTTTC-------------------HHH--HHHHHHHHHHHHHHTEEEEEEE
T ss_pred h-----chhhcCCEEEEEcCCCCCCCCc-------------------hHH--HHHHHHHHHHHHhcCcEEEEEe
Confidence 1 112247888888874 455310 000 1257899999999999999983
No 35
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=60.58 E-value=25 Score=42.96 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=59.6
Q ss_pred hHHHhhhhHHHHHhhccccccccccCCCcceEEEEEEccCCCC----------C----------------cCce--e---
Q 003455 5 FYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSY----------C----------------ACLV--Q--- 53 (818)
Q Consensus 5 ~~~l~~YI~p~ie~f~~~~~~e~~~~~~~~~yaLVvf~~~~~~----------~----------------~~~v--~--- 53 (818)
|+.+|+-+..+|+.|... ...++|||.|.+..-. . ...+ .
T Consensus 248 l~~~K~a~~~~ld~L~~~---------~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~~~~w~~~~t~~t~~~~~ 318 (893)
T 2ww8_A 248 AERAGEATRSLIDKITSD---------SENRVALVTYASTIFDGTEFTVEKGVADKNGKRLNDSLFWNYDQTSFTTNTKD 318 (893)
T ss_dssp HHHHHHHHHHHHHHHHTS---------TTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECCCTTSCTTCCEEEEECCB
T ss_pred HHHHHHHHHHHHHHhhcC---------CCcEEEEEEecCccccccccccccccccccccccccccccccccccccccccc
Confidence 345566777777776421 2489999999874210 0 0000 0
Q ss_pred --eccCCCCHHHHH---HHhccccC---------CCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecC
Q 003455 54 --RSGWTKDVDIFL---HWLSTIPF---------AGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAAS 119 (818)
Q Consensus 54 --~~g~T~~~~~fl---~wL~~i~f---------~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nS 119 (818)
...||.|...+. ..|+++.. .+|| .++.+||..|+.+|+- ..+....|+.|||+.-
T Consensus 319 ~~~lpLT~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GG---T~i~~AL~~A~~lL~~-------~~~~~~~kvIILLTDG 388 (893)
T 2ww8_A 319 YSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGA---TFTQKALMKADEILTQ-------QARQNSQKVIFHITDG 388 (893)
T ss_dssp CCEEEEECCHHHHHHHHHHSCSCCCCSCTTSGGGGGCS---CCHHHHHHHHHHHHHH-------HSCSSSEEEEEEEESS
T ss_pred cccccccCCHHHHHHHHHHHhhhccccccccccccCCC---ChHHHHHHHHHHHHHh-------hcccCCCeEEEEEcCC
Confidence 114577886655 55554321 2333 5688999999999951 0123567899999987
Q ss_pred CCCC
Q 003455 120 NPHP 123 (818)
Q Consensus 120 pP~~ 123 (818)
-|..
T Consensus 389 ~pt~ 392 (893)
T 2ww8_A 389 VPTM 392 (893)
T ss_dssp CCSE
T ss_pred CCCc
Confidence 6553
No 36
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=53.17 E-value=87 Score=37.41 Aligned_cols=111 Identities=13% Similarity=0.155 Sum_probs=61.4
Q ss_pred HHhcccc--CCCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCcccccccccchhh
Q 003455 66 HWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNE 143 (818)
Q Consensus 66 ~wL~~i~--f~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~~~l~~~~~~~ 143 (818)
..|+.|+ |..+-....+++-||..|+.++. . .+ -+.|+...++|-.=|=. .....+...++...|
T Consensus 254 ~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~--~---------~G-GrI~~F~sg~pt~GpG~-l~~r~~~~~~~~~ke 320 (751)
T 3eh1_A 254 DLLNALPNMFTNTRETHSALGPALQAAFKLMS--P---------TG-GRVSVFQTQLPSLGAGL-LQSREDPNQRSSTKV 320 (751)
T ss_dssp HHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHT--T---------TC-EEEEEEECSCCCSSTTC-CCCCCCSCGGGGSSS
T ss_pred HHHHhhhHhhcCCCCCccchHHHHHHHHHHhh--c---------CC-CEEEEEecCCCCCCCCc-cccccccccCCCchh
Confidence 3344443 55555677899999999999995 1 12 23344445555433321 111111100110012
Q ss_pred hhhhcc-CCCHHHHHHHHhhcCceEEEeC-C-C--cchHHHHHHHHhcCCC
Q 003455 144 AQAESR-LSDAETVAKSFVQCSVSLSVIC-P-K--QLPKLTAIYNAAKRNP 189 (818)
Q Consensus 144 ~~~~~~-l~~~e~la~~~~~~~I~lSiIs-P-r--klp~L~~lf~~a~~~~ 189 (818)
...+.. ..=.+.+|+.|.+.+|.+.+.+ + . .+..|..|.+..+|..
T Consensus 321 ~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v 371 (751)
T 3eh1_A 321 VQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCI 371 (751)
T ss_dssp CTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCE
T ss_pred hhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceE
Confidence 111111 1135899999999988887653 3 2 4777888888888864
No 37
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=48.25 E-value=1.1e+02 Score=36.70 Aligned_cols=111 Identities=12% Similarity=0.134 Sum_probs=61.4
Q ss_pred HHHhcccc--CCCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCCCCCCCcCccc-ccccccch
Q 003455 65 LHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQM-QNLDQNEN 141 (818)
Q Consensus 65 l~wL~~i~--f~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~lp~~~~~p~~-~~l~~~~~ 141 (818)
...|++|+ |..+.....+++-||..|+.++. . .--+.|+...++|-.=|=. ..... .+.... .
T Consensus 288 ~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~--~----------~GGrI~~F~sg~pt~GpG~-l~~r~~~~~~~~-~ 353 (810)
T 1pcx_A 288 ETLLTKIPQIFQSNLITNFALGPALKSAYHLIG--G----------VGGKIIVVSGTLPNLGIGK-LQRRNESGVVNT-S 353 (810)
T ss_dssp HHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHT--T----------TCEEEEEEESSCCCSSTTC-CCC-----------
T ss_pred HHHHHhhhhhccCCCCCCccHHHHHHHHHHHHH--h----------cCCEEEEEecCCCCCCCCc-ccccccccccCc-c
Confidence 34444444 55655777899999999999995 1 1124455555565432211 11110 110000 0
Q ss_pred hhhhhhc--cCCCHHHHHHHHhhcCceEEEeCC--C--cchHHHHHHHHhcCCC
Q 003455 142 NEAQAES--RLSDAETVAKSFVQCSVSLSVICP--K--QLPKLTAIYNAAKRNP 189 (818)
Q Consensus 142 ~~~~~~~--~l~~~e~la~~~~~~~I~lSiIsP--r--klp~L~~lf~~a~~~~ 189 (818)
.|..++. ...-.+.+|+.|.+.+|.+.|.+= . .+..|..|.+..+|..
T Consensus 354 ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v 407 (810)
T 1pcx_A 354 KETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQT 407 (810)
T ss_dssp ----------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCE
T ss_pred cchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEE
Confidence 0111011 111358999999999999988753 2 4778999999888764
No 38
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=35.76 E-value=6.7 Score=38.63 Aligned_cols=70 Identities=17% Similarity=0.370 Sum_probs=45.2
Q ss_pred cceeeeccccccccCCCcc-----------cccccccccccccchhhccCCchhhHHhhccchhcccccc-ccCccceee
Q 003455 551 KYVKVWEGSLSGQRQGQPV-----------FITKLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQ-YVGKADFLV 618 (818)
Q Consensus 551 ~y~kvweg~Ls~qR~gqpV-----------~I~~~egyrsssasEtlAa~wP~amQilr~I~q~~mn~~q-y~gkad~lv 618 (818)
.-.++|.|.|+|.+.+++. +.|.+. .....+..+.+||.-+- ..+|++..+.+.. +-+++..++
T Consensus 10 ~k~~iWsG~LeW~ek~~~~~~d~~~~~tr~l~C~vs---~~~ge~i~~e~WP~kL~-mqLiPk~lL~~ig~~fknSk~Vv 85 (166)
T 2ky6_A 10 NKLLAWSGVLEWQEKPKPASVDANTKLTRSLPCQVY---VNHGENLKTEQWPQKLI-MQLIPQQLLTTLGPLFRNSRMVQ 85 (166)
T ss_dssp SEEEEEEEEEEEECCCCSSSSCTTCCCEEEEEEEEE---EETTSCCCGGGCCSEEE-EEEEEHHHHHHHGGGGSSEEEEE
T ss_pred cccceeeeEEEEeecCCCCCCCccccceeEeeeEEE---ecCCCccccccCCHhhh-hhhCcHHHHHHHHHHhhcCeEEE
Confidence 4457999999999997642 233333 22334688899998432 2447775555333 446688889
Q ss_pred eecCcc
Q 003455 619 FRAMNQ 624 (818)
Q Consensus 619 fR~ln~ 624 (818)
|+..+.
T Consensus 86 F~~t~~ 91 (166)
T 2ky6_A 86 FHFTNK 91 (166)
T ss_dssp EEECSS
T ss_pred EecCCC
Confidence 987763
No 39
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=33.01 E-value=2.6e+02 Score=33.43 Aligned_cols=101 Identities=14% Similarity=0.156 Sum_probs=54.8
Q ss_pred CChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCC-CCCCCCcCcccccccccchhhhhhhcc-CCCHHH
Q 003455 78 FNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH-PLPTPVYRPQMQNLDQNENNEAQAESR-LSDAET 155 (818)
Q Consensus 78 ~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~-~lp~~~~~p~~~~l~~~~~~~~~~~~~-l~~~e~ 155 (818)
..+.+++-+|+.||.++.... +--+.|+...+.|. .-|=.+-.-.+.++.+.+ .|...+.. ..-.+.
T Consensus 290 ~~~t~~g~al~aa~~~l~~~~----------~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~t~-ke~~~~~~a~~fY~~ 358 (770)
T 3efo_B 290 ENETVFAPVIQAGMEALKAAD----------CPGKLFIFHSSLPTAEAPGKLKNRDDKKLVNTD-KEKILFQPQTNVYDS 358 (770)
T ss_dssp CCCCCCHHHHHHHHHHHHHHT----------CCEEEEEEECSCCCSSSTTCCCCCCCCCCSSCS-CGGGGGSCSSSHHHH
T ss_pred CCcchHHHHHHHHHHHhccCC----------CCcEEEEEecCCCCcCCCccccccccccccCCc-chhhhhcchHHHHHH
Confidence 566788889999998875111 11233444445455 223211111111111110 12211111 123678
Q ss_pred HHHHHhhcCceEEEeC-C-C--cchHHHHHHHHhcCCC
Q 003455 156 VAKSFVQCSVSLSVIC-P-K--QLPKLTAIYNAAKRNP 189 (818)
Q Consensus 156 la~~~~~~~I~lSiIs-P-r--klp~L~~lf~~a~~~~ 189 (818)
+|+.|.+.+|.+.|.+ + . -+..|..|.+..+|..
T Consensus 359 lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 396 (770)
T 3efo_B 359 LAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTL 396 (770)
T ss_dssp HHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred HHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceE
Confidence 9999999998888763 3 3 3677888988888764
No 40
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=28.88 E-value=4.4e+02 Score=31.44 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=60.4
Q ss_pred HHHhcccc--CCCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCC-CCCCCCcCcccccccccch
Q 003455 65 LHWLSTIP--FAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPH-PLPTPVYRPQMQNLDQNEN 141 (818)
Q Consensus 65 l~wL~~i~--f~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~-~lp~~~~~p~~~~l~~~~~ 141 (818)
-..|++|+ |..--..+.+++-+|+.||.++... .+--+.|+...+.|. .=|=.+-.-.+.++.+.+
T Consensus 271 ~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~~----------~~GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~sd- 339 (766)
T 3eh2_A 271 TSLLDQIPEMFADTRETETVFVPVIQAGMEALKAA----------ECAGKLFLFHTSLPIAEAPGKLKNRDDRKLINTD- 339 (766)
T ss_dssp HHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHT----------TCCEEEEEEECSCCCSSSTTCCCCCCCGGGTTST-
T ss_pred HHHHHhhhhhccCCCCCcchHHHHHHHHHHHhccC----------CCCcEEEEEecCCCCcCCCcccccccccccCCCc-
Confidence 33444443 3322255678888999999887511 112233444455465 222211111111111111
Q ss_pred hhhhhhcc-CCCHHHHHHHHhhcCceEEEeC-C-C--cchHHHHHHHHhcCCC
Q 003455 142 NEAQAESR-LSDAETVAKSFVQCSVSLSVIC-P-K--QLPKLTAIYNAAKRNP 189 (818)
Q Consensus 142 ~~~~~~~~-l~~~e~la~~~~~~~I~lSiIs-P-r--klp~L~~lf~~a~~~~ 189 (818)
.|...+.. ..-.+.+|+.|.+.+|.+.|.+ + . .+..|..|.+..+|..
T Consensus 340 ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v 392 (766)
T 3eh2_A 340 KEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSV 392 (766)
T ss_dssp TGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCE
T ss_pred chhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceE
Confidence 12211111 1235799999999988887754 3 3 4777899998888764
No 41
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=28.78 E-value=1.1e+02 Score=34.54 Aligned_cols=61 Identities=15% Similarity=0.051 Sum_probs=36.5
Q ss_pred ceEEEEEEccCCCCCcCceeeccCC--CCHHHHHHHhccccCCCCCCChhhHHHHHHHHHhhhccCCCCCCCCCCCCCcc
Q 003455 34 VELSLVTFNTHGSYCACLVQRSGWT--KDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQR 111 (818)
Q Consensus 34 ~~yaLVvf~~~~~~~~~~v~~~g~T--~~~~~fl~wL~~i~f~GGG~~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qk 111 (818)
...+||+|.+. + ....+| .++..++..|+.+ .||| ..|++||..|+..- ...+
T Consensus 408 d~vglv~Fs~~--~-----~~~~~t~~~~l~~~l~~l~~~--~~Gg---T~i~~aL~~a~~~~-------------~~~~ 462 (538)
T 1yvr_A 408 KDSHMVAFSDE--M-----LPCPITVNMLLHEVVEKMSDI--TMGS---TDCALPMLWAQKTN-------------TAAD 462 (538)
T ss_dssp SSEEEEEESSS--E-----ECCSCCTTSCHHHHHHHHTTC--CCSC---CCTTHHHHHHHHTT-------------CCCS
T ss_pred CceEEEEECCC--c-----eEcCCCCcccHHHHHHHHhcC--CCCC---CcHHHHHHHHHhcc-------------CCCC
Confidence 46899999851 1 122333 3466667777654 4555 34567788777642 1236
Q ss_pred EEEEeecC
Q 003455 112 HCILVAAS 119 (818)
Q Consensus 112 hCILi~nS 119 (818)
.+|||+.-
T Consensus 463 ~iIliTDg 470 (538)
T 1yvr_A 463 IFIVFTDC 470 (538)
T ss_dssp EEEEEECC
T ss_pred EEEEEcCC
Confidence 78888754
No 42
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=21.67 E-value=1.3e+02 Score=32.12 Aligned_cols=134 Identities=11% Similarity=0.190 Sum_probs=79.2
Q ss_pred CCCCcCceeeccCCCCHHHHHHHhccccCCCCCC-ChhhHHHHHHHHHhhhccCCCCCCCCCCCCCccEEEEeecCCCCC
Q 003455 45 GSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGF-NDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHP 123 (818)
Q Consensus 45 ~~~~~~~v~~~g~T~~~~~fl~wL~~i~f~GGG~-~~~aiaEGLa~AL~~~~~~~~~~~~~~~~~~qkhCILi~nSpP~~ 123 (818)
.+|.+.+|=|+.--..+.+|-.+...++.+=||. ...+=..+|+..+.+.+ .++ ..+.-|.+++--
T Consensus 96 s~~~D~iviR~~~~~~~~~la~~~~~vPVINag~G~~~HPtQaLaDl~Ti~e--~~g-----~l~gl~va~vGD------ 162 (310)
T 3csu_A 96 STYVDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE--TQG-----RLDNLHVAMVGD------ 162 (310)
T ss_dssp TTTCSEEEEEESSTTHHHHHHHHCTTCCEEEEEETTSCCHHHHHHHHHHHHH--HHS-----CSSSCEEEEESC------
T ss_pred HHhCCEEEEECCChhHHHHHHHhcCCCCEEcCccCCCCCchHHHHHHHHHHH--HhC-----CcCCcEEEEECC------
Confidence 4777888888877777888777764688887775 45777788888888875 111 123334333210
Q ss_pred CCCCCcCcccccccccchhhhhhhccCCCHHHHHHHHhhc-CceEEEeCCCcc--h-HHHHHHHHhcCCCCCCCCCCCCC
Q 003455 124 LPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQC-SVSLSVICPKQL--P-KLTAIYNAAKRNPRAADPPVDNS 199 (818)
Q Consensus 124 lp~~~~~p~~~~l~~~~~~~~~~~~~l~~~e~la~~~~~~-~I~lSiIsPrkl--p-~L~~lf~~a~~~~~~~~~~~d~a 199 (818)
. .+++ .+-.++.++... |++|.|+||+.+ + .+.+..++.+..-.......+-.
T Consensus 163 ---------------~------~~~r--va~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav 219 (310)
T 3csu_A 163 ---------------L------KYGR--TVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVM 219 (310)
T ss_dssp ---------------T------TTCH--HHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTT
T ss_pred ---------------C------CCCc--hHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHh
Confidence 0 0111 456778888899 999999999976 2 24444443332211122234556
Q ss_pred CCCCeEEEeeccchhhh
Q 003455 200 KNPHFLVLISENFMEAR 216 (818)
Q Consensus 200 k~p~hlVLl~g~~l~~~ 216 (818)
|+-+.+...+ |-++|
T Consensus 220 ~~aDvvyt~~--~q~er 234 (310)
T 3csu_A 220 AEVDILYMTR--VQKER 234 (310)
T ss_dssp TTCSEEEECC-------
T ss_pred cCCCEEEECC--ccccc
Confidence 6667666654 44444
Done!