Query 003457
Match_columns 818
No_of_seqs 817 out of 3903
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 23:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03089 hypothetical protein; 100.0 1.1E-76 2.5E-81 618.3 28.5 333 455-801 27-370 (373)
2 PLN03077 Protein ECB2; Provisi 100.0 2E-64 4.3E-69 617.1 42.1 523 10-555 182-754 (857)
3 PLN03081 pentatricopeptide (PP 100.0 3E-62 6.5E-67 584.4 52.5 480 10-535 118-603 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 6.3E-60 1.4E-64 577.5 51.7 480 9-536 282-767 (857)
5 PLN03218 maturation of RBCL 1; 100.0 1.1E-50 2.4E-55 488.2 54.6 428 13-445 435-906 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.5E-52 3.2E-57 501.0 36.4 447 77-527 84-579 (697)
7 PLN03218 maturation of RBCL 1; 100.0 6.2E-50 1.3E-54 481.8 58.1 416 11-430 366-800 (1060)
8 PLN03089 hypothetical protein; 100.0 5.6E-45 1.2E-49 380.6 18.0 175 612-801 10-191 (373)
9 PF04862 DUF642: Protein of un 100.0 8.9E-39 1.9E-43 304.0 16.3 151 630-794 1-159 (159)
10 TIGR02917 PEP_TPR_lipo putativ 100.0 3.1E-24 6.6E-29 265.2 53.5 404 48-484 466-880 (899)
11 TIGR02917 PEP_TPR_lipo putativ 100.0 7.9E-24 1.7E-28 261.6 54.4 422 13-445 463-897 (899)
12 KOG4626 O-linked N-acetylgluco 99.9 8.8E-26 1.9E-30 240.9 26.6 383 80-492 116-508 (966)
13 KOG4626 O-linked N-acetylgluco 99.9 2.7E-21 5.8E-26 206.9 31.4 381 45-437 114-508 (966)
14 PRK11447 cellulose synthase su 99.9 8.2E-19 1.8E-23 220.7 51.0 412 22-445 122-663 (1157)
15 PRK11447 cellulose synthase su 99.9 9E-18 2E-22 211.3 54.6 376 60-445 280-737 (1157)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.3E-18 5E-23 203.5 45.2 380 60-445 138-568 (615)
17 PRK10049 pgaA outer membrane p 99.8 2E-17 4.4E-22 199.2 45.1 388 51-446 19-454 (765)
18 PRK15174 Vi polysaccharide exp 99.8 4E-17 8.7E-22 192.7 44.2 353 60-419 16-386 (656)
19 PRK15174 Vi polysaccharide exp 99.8 5.6E-17 1.2E-21 191.5 42.1 349 91-446 16-379 (656)
20 PRK11788 tetratricopeptide rep 99.8 1.8E-17 3.9E-22 185.3 35.9 281 128-413 48-346 (389)
21 TIGR00990 3a0801s09 mitochondr 99.8 3.2E-16 6.9E-21 185.3 47.4 378 28-420 143-577 (615)
22 PRK11788 tetratricopeptide rep 99.8 2.1E-17 4.5E-22 184.8 35.1 281 92-379 47-344 (389)
23 PRK10049 pgaA outer membrane p 99.8 1.2E-15 2.5E-20 184.0 49.5 397 16-421 19-463 (765)
24 PRK09782 bacteriophage N4 rece 99.8 7.2E-16 1.6E-20 186.2 46.4 176 26-209 58-275 (987)
25 PRK09782 bacteriophage N4 rece 99.8 3.3E-15 7.3E-20 180.4 52.1 210 230-445 490-703 (987)
26 PF04862 DUF642: Protein of un 99.8 1.8E-19 3.8E-24 171.8 8.2 152 457-619 2-159 (159)
27 PRK14574 hmsH outer membrane p 99.8 1.1E-14 2.3E-19 172.8 49.7 388 52-445 73-510 (822)
28 PRK14574 hmsH outer membrane p 99.8 5.3E-15 1.2E-19 175.3 41.0 407 60-493 45-503 (822)
29 KOG2002 TPR-containing nuclear 99.7 3E-14 6.5E-19 161.5 36.9 405 46-481 269-756 (1018)
30 KOG2003 TPR repeat-containing 99.7 3.1E-14 6.7E-19 147.9 27.1 347 82-434 278-709 (840)
31 KOG2002 TPR-containing nuclear 99.6 1E-12 2.3E-17 149.2 37.2 314 114-433 413-764 (1018)
32 KOG0495 HAT repeat protein [RN 99.6 1.2E-10 2.6E-15 126.9 46.3 369 60-434 417-802 (913)
33 KOG2076 RNA polymerase III tra 99.6 6.4E-12 1.4E-16 142.1 35.5 326 116-444 140-508 (895)
34 PF13429 TPR_15: Tetratricopep 99.6 1E-14 2.2E-19 155.2 11.9 256 186-445 13-274 (280)
35 KOG1155 Anaphase-promoting com 99.6 5.9E-11 1.3E-15 125.1 37.4 255 187-445 233-492 (559)
36 KOG1126 DNA-binding cell divis 99.5 8.9E-13 1.9E-17 144.9 24.3 274 165-446 334-618 (638)
37 KOG2003 TPR repeat-containing 99.5 1.8E-11 4E-16 127.6 32.4 393 46-445 200-686 (840)
38 KOG4422 Uncharacterized conser 99.5 2.4E-10 5.3E-15 119.0 39.9 398 16-445 117-587 (625)
39 KOG0495 HAT repeat protein [RN 99.5 4.9E-10 1.1E-14 122.3 43.6 354 82-445 518-877 (913)
40 KOG2076 RNA polymerase III tra 99.5 1.7E-10 3.7E-15 130.7 39.8 347 61-411 151-552 (895)
41 KOG1126 DNA-binding cell divis 99.5 3.4E-12 7.3E-17 140.4 24.4 279 130-418 334-624 (638)
42 PRK10747 putative protoheme IX 99.5 3.7E-11 7.9E-16 134.1 33.0 248 161-415 129-391 (398)
43 KOG0547 Translocase of outer m 99.5 5.8E-11 1.2E-15 125.8 31.6 377 60-445 126-563 (606)
44 PRK10747 putative protoheme IX 99.5 6.5E-11 1.4E-15 132.1 34.1 274 162-445 96-387 (398)
45 KOG1155 Anaphase-promoting com 99.5 1.5E-10 3.3E-15 122.0 33.0 351 77-442 161-530 (559)
46 TIGR00540 hemY_coli hemY prote 99.5 1.9E-10 4E-15 129.1 35.9 283 127-413 96-398 (409)
47 TIGR00540 hemY_coli hemY prote 99.5 1.2E-10 2.5E-15 130.7 32.7 292 82-379 84-396 (409)
48 COG2956 Predicted N-acetylgluc 99.4 2.2E-10 4.8E-15 115.8 30.3 285 93-413 48-346 (389)
49 KOG1173 Anaphase-promoting com 99.4 1.2E-09 2.5E-14 118.3 36.6 395 43-445 45-515 (611)
50 PF13429 TPR_15: Tetratricopep 99.4 1.5E-12 3.3E-17 138.5 12.7 253 87-343 15-274 (280)
51 COG2956 Predicted N-acetylgluc 99.4 4.3E-10 9.4E-15 113.8 27.8 286 128-445 48-344 (389)
52 KOG1915 Cell cycle control pro 99.4 1.7E-08 3.6E-13 106.8 39.8 411 45-464 71-524 (677)
53 KOG4162 Predicted calmodulin-b 99.4 2.3E-09 4.9E-14 119.9 34.6 398 41-446 317-781 (799)
54 KOG1915 Cell cycle control pro 99.4 4.4E-08 9.6E-13 103.7 41.5 391 28-430 123-551 (677)
55 KOG4422 Uncharacterized conser 99.3 1.2E-08 2.6E-13 106.6 35.1 344 16-379 208-587 (625)
56 COG3071 HemY Uncharacterized e 99.3 6.3E-09 1.4E-13 108.7 33.2 278 128-413 97-389 (400)
57 TIGR02521 type_IV_pilW type IV 99.3 6.7E-10 1.5E-14 113.6 24.9 195 250-445 30-229 (234)
58 KOG0547 Translocase of outer m 99.3 5.8E-09 1.3E-13 110.9 29.2 335 83-446 118-489 (606)
59 KOG1840 Kinesin light chain [C 99.3 1.4E-09 3.1E-14 121.2 26.2 229 217-445 200-476 (508)
60 KOG1129 TPR repeat-containing 99.3 2.3E-10 4.9E-15 115.5 17.2 221 220-445 227-455 (478)
61 COG3071 HemY Uncharacterized e 99.3 1.9E-08 4.2E-13 105.1 31.8 279 93-379 97-387 (400)
62 KOG1173 Anaphase-promoting com 99.2 8.3E-09 1.8E-13 111.8 30.0 280 146-428 240-532 (611)
63 KOG1174 Anaphase-promoting com 99.2 1.6E-07 3.6E-12 98.0 37.5 259 180-445 231-497 (564)
64 PRK12370 invasion protein regu 99.2 6.5E-09 1.4E-13 121.2 30.2 255 180-441 255-529 (553)
65 TIGR02521 type_IV_pilW type IV 99.2 9.4E-09 2E-13 105.0 25.9 199 182-415 32-233 (234)
66 KOG1174 Anaphase-promoting com 99.2 8E-08 1.7E-12 100.3 31.5 306 113-424 192-510 (564)
67 PRK12370 invasion protein regu 99.1 6.3E-09 1.4E-13 121.2 25.2 244 164-416 275-537 (553)
68 PRK11189 lipoprotein NlpI; Pro 99.1 2.7E-08 5.8E-13 106.4 27.2 233 196-436 41-288 (296)
69 KOG1840 Kinesin light chain [C 99.1 2.4E-08 5.1E-13 111.6 25.6 231 183-413 201-478 (508)
70 PRK11189 lipoprotein NlpI; Pro 99.1 9.5E-09 2.1E-13 109.9 21.3 209 230-446 40-263 (296)
71 KOG1156 N-terminal acetyltrans 99.1 1.7E-06 3.6E-11 95.7 37.7 376 59-442 51-462 (700)
72 KOG1125 TPR repeat-containing 99.0 9E-09 1.9E-13 112.1 17.4 214 226-445 295-525 (579)
73 KOG4162 Predicted calmodulin-b 99.0 9.1E-07 2E-11 99.6 33.0 362 78-445 321-746 (799)
74 KOG1129 TPR repeat-containing 99.0 3.1E-08 6.7E-13 100.3 19.3 236 185-425 227-469 (478)
75 KOG2376 Signal recognition par 99.0 5.5E-06 1.2E-10 90.8 37.3 367 60-443 57-515 (652)
76 COG3063 PilF Tfp pilus assembl 99.0 3.2E-08 6.9E-13 96.4 18.1 159 284-445 37-199 (250)
77 KOG4318 Bicoid mRNA stability 99.0 2.1E-07 4.6E-12 105.5 26.8 419 8-445 18-554 (1088)
78 KOG2047 mRNA splicing factor [ 99.0 3.8E-05 8.3E-10 84.9 43.2 395 42-445 133-612 (835)
79 KOG3617 WD40 and TPR repeat-co 99.0 1.2E-06 2.7E-11 98.2 32.2 373 42-457 720-1121(1416)
80 PF13041 PPR_2: PPR repeat fam 99.0 1.5E-09 3.3E-14 82.3 6.7 50 78-127 1-50 (50)
81 KOG0548 Molecular co-chaperone 99.0 1.8E-06 3.8E-11 93.8 32.2 364 60-443 13-450 (539)
82 KOG0624 dsRNA-activated protei 99.0 1.2E-06 2.5E-11 89.7 28.8 314 85-445 43-367 (504)
83 KOG0548 Molecular co-chaperone 98.9 9E-07 1.9E-11 96.1 28.4 340 88-440 10-413 (539)
84 PF12569 NARP1: NMDA receptor- 98.9 1.8E-06 3.9E-11 97.9 32.4 123 255-379 198-331 (517)
85 PF12569 NARP1: NMDA receptor- 98.9 1.5E-05 3.2E-10 90.6 39.4 401 29-442 18-514 (517)
86 KOG3785 Uncharacterized conser 98.9 1.8E-06 3.8E-11 88.7 27.8 142 59-210 67-214 (557)
87 KOG4318 Bicoid mRNA stability 98.9 1.9E-07 4.1E-12 105.9 22.5 325 77-434 22-394 (1088)
88 COG3063 PilF Tfp pilus assembl 98.9 9.4E-07 2E-11 86.3 23.0 193 224-419 43-241 (250)
89 PF13041 PPR_2: PPR repeat fam 98.8 7.1E-09 1.5E-13 78.6 6.6 50 280-329 1-50 (50)
90 cd05804 StaR_like StaR_like; a 98.8 8E-06 1.7E-10 90.0 33.5 191 256-446 119-334 (355)
91 KOG1156 N-terminal acetyltrans 98.8 7.7E-06 1.7E-10 90.6 31.8 65 382-446 366-432 (700)
92 KOG2047 mRNA splicing factor [ 98.8 0.0002 4.3E-09 79.5 41.4 364 65-444 91-536 (835)
93 KOG2376 Signal recognition par 98.8 1.2E-05 2.5E-10 88.3 31.7 377 54-446 19-485 (652)
94 KOG4340 Uncharacterized conser 98.8 4E-06 8.8E-11 84.3 25.5 375 59-445 20-440 (459)
95 cd05804 StaR_like StaR_like; a 98.8 1.5E-05 3.3E-10 87.8 33.5 190 224-415 122-337 (355)
96 PF04733 Coatomer_E: Coatomer 98.8 4.5E-07 9.7E-12 95.9 19.7 248 160-419 11-270 (290)
97 PRK04841 transcriptional regul 98.8 1.1E-05 2.4E-10 100.7 35.5 321 125-445 384-757 (903)
98 KOG1127 TPR repeat-containing 98.8 3.9E-06 8.4E-11 96.6 27.5 147 332-481 798-973 (1238)
99 PRK04841 transcriptional regul 98.7 2.9E-05 6.4E-10 96.8 37.8 357 60-417 352-763 (903)
100 KOG0624 dsRNA-activated protei 98.7 2E-05 4.3E-10 80.9 29.0 200 59-279 48-251 (504)
101 PF04733 Coatomer_E: Coatomer 98.7 3E-07 6.4E-12 97.3 16.5 242 189-445 9-262 (290)
102 KOG3617 WD40 and TPR repeat-co 98.7 3.3E-05 7.1E-10 87.2 32.3 390 45-492 755-1217(1416)
103 KOG1125 TPR repeat-containing 98.7 7.1E-07 1.5E-11 97.6 18.1 249 188-440 292-563 (579)
104 KOG3616 Selective LIM binding 98.7 3.8E-05 8.2E-10 85.4 31.3 354 52-454 562-951 (1636)
105 PRK15359 type III secretion sy 98.7 2.5E-07 5.4E-12 87.6 12.1 90 356-445 27-118 (144)
106 KOG1127 TPR repeat-containing 98.7 7.1E-06 1.5E-10 94.5 25.4 371 62-446 471-877 (1238)
107 KOG3785 Uncharacterized conser 98.6 0.0001 2.2E-09 76.1 31.0 337 62-417 104-493 (557)
108 KOG0985 Vesicle coat protein c 98.6 0.00027 5.7E-09 81.7 34.8 320 78-432 982-1326(1666)
109 PRK15359 type III secretion sy 98.6 2.8E-06 6.1E-11 80.3 16.5 126 302-433 13-140 (144)
110 TIGR03302 OM_YfiO outer membra 98.6 3.9E-06 8.4E-11 86.7 19.0 179 250-445 32-229 (235)
111 KOG4340 Uncharacterized conser 98.6 1.4E-05 3.1E-10 80.5 21.5 307 117-441 12-332 (459)
112 PRK10370 formate-dependent nit 98.6 4.3E-06 9.3E-11 83.6 18.1 114 330-445 52-170 (198)
113 PLN02789 farnesyltranstransfer 98.5 2.4E-05 5.2E-10 83.9 24.7 198 231-432 52-268 (320)
114 KOG3616 Selective LIM binding 98.5 8.4E-05 1.8E-09 82.8 26.9 253 159-440 741-1016(1636)
115 KOG0985 Vesicle coat protein c 98.4 0.00058 1.2E-08 79.1 33.0 305 92-439 1060-1374(1666)
116 KOG1128 Uncharacterized conser 98.4 1.9E-05 4E-10 88.8 20.3 207 221-445 403-613 (777)
117 PRK10370 formate-dependent nit 98.4 4.3E-05 9.3E-10 76.4 21.0 154 258-422 23-181 (198)
118 KOG1128 Uncharacterized conser 98.4 2.5E-05 5.4E-10 87.8 20.6 184 247-445 394-579 (777)
119 PRK15179 Vi polysaccharide bio 98.4 3.4E-05 7.4E-10 90.9 22.6 130 314-445 83-214 (694)
120 TIGR03302 OM_YfiO outer membra 98.4 2.7E-05 5.9E-10 80.4 19.5 183 213-417 30-235 (235)
121 KOG1070 rRNA processing protei 98.4 3.6E-05 7.8E-10 91.7 21.6 191 251-445 1458-1660(1710)
122 PLN02789 farnesyltranstransfer 98.4 0.0002 4.4E-09 76.8 25.9 202 191-397 47-267 (320)
123 KOG1070 rRNA processing protei 98.3 0.00015 3.1E-09 86.7 26.3 199 116-316 1459-1668(1710)
124 TIGR02552 LcrH_SycD type III s 98.3 7.2E-06 1.6E-10 76.6 12.1 90 356-445 20-111 (135)
125 KOG3081 Vesicle coat complex C 98.3 0.00016 3.5E-09 72.4 21.6 247 160-417 18-274 (299)
126 KOG3081 Vesicle coat complex C 98.3 0.00035 7.6E-09 70.0 23.8 142 289-440 115-262 (299)
127 PRK14720 transcript cleavage f 98.3 5E-05 1.1E-09 90.2 21.3 214 180-430 30-268 (906)
128 PF02018 CBM_4_9: Carbohydrate 98.3 1.6E-05 3.5E-10 73.7 13.9 111 630-772 2-126 (131)
129 PRK15179 Vi polysaccharide bio 98.3 0.00023 4.9E-09 84.0 25.7 158 212-379 82-242 (694)
130 PRK14720 transcript cleavage f 98.2 0.00046 1E-08 82.2 27.2 277 78-419 29-311 (906)
131 COG5010 TadD Flp pilus assembl 98.2 0.00011 2.4E-09 73.6 18.7 117 323-441 106-224 (257)
132 KOG3060 Uncharacterized conser 98.2 0.0004 8.6E-09 69.1 22.1 167 254-423 55-229 (289)
133 PRK15363 pathogenicity island 98.2 1.4E-05 3.1E-10 74.7 11.4 97 352-448 34-132 (157)
134 COG4783 Putative Zn-dependent 98.2 0.001 2.2E-08 72.3 26.1 177 149-346 273-454 (484)
135 KOG2053 Mitochondrial inherita 98.1 0.036 7.7E-07 64.6 40.6 196 48-246 42-256 (932)
136 COG5010 TadD Flp pilus assembl 98.1 0.00023 5E-09 71.4 19.1 153 255-410 70-227 (257)
137 COG4783 Putative Zn-dependent 98.1 0.0003 6.4E-09 76.3 20.4 117 326-444 315-433 (484)
138 TIGR02552 LcrH_SycD type III s 98.1 0.0001 2.2E-09 68.8 15.3 116 304-422 5-122 (135)
139 KOG1914 mRNA cleavage and poly 98.1 0.019 4.1E-07 63.1 33.4 393 44-445 17-498 (656)
140 KOG0553 TPR repeat-containing 98.0 1.4E-05 3E-10 81.5 7.8 83 363-445 91-175 (304)
141 KOG1914 mRNA cleavage and poly 98.0 0.051 1.1E-06 59.9 37.3 425 10-440 15-531 (656)
142 KOG3060 Uncharacterized conser 98.0 0.0006 1.3E-08 67.9 17.8 158 284-445 54-217 (289)
143 PF12854 PPR_1: PPR repeat 97.9 1.3E-05 2.9E-10 54.8 4.4 32 145-176 2-33 (34)
144 PF13432 TPR_16: Tetratricopep 97.9 1.3E-05 2.8E-10 64.3 5.1 56 391-446 3-58 (65)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00029 6.3E-09 77.2 16.8 127 252-381 170-296 (395)
146 PLN03088 SGT1, suppressor of 97.9 5.1E-05 1.1E-09 83.3 10.5 103 324-428 9-113 (356)
147 cd00189 TPR Tetratricopeptide 97.9 0.00018 3.8E-09 61.1 11.8 90 356-445 3-94 (100)
148 PF12854 PPR_1: PPR repeat 97.9 2.2E-05 4.7E-10 53.8 4.6 32 348-379 2-33 (34)
149 PF13414 TPR_11: TPR repeat; P 97.9 3.8E-05 8.1E-10 62.4 6.5 63 384-446 2-65 (69)
150 KOG0550 Molecular chaperone (D 97.9 0.00054 1.2E-08 72.6 16.3 152 290-445 177-347 (486)
151 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00017 3.6E-09 65.3 11.1 101 320-420 5-111 (119)
152 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00052 1.1E-08 75.2 16.5 126 151-278 170-295 (395)
153 KOG0553 TPR repeat-containing 97.8 0.00017 3.8E-09 73.6 11.6 108 325-434 89-198 (304)
154 PF09976 TPR_21: Tetratricopep 97.7 0.0016 3.4E-08 61.7 16.4 125 285-411 15-144 (145)
155 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00055 1.2E-08 61.9 12.9 95 285-379 5-102 (119)
156 PRK10153 DNA-binding transcrip 97.7 0.001 2.2E-08 76.2 17.3 129 313-445 333-479 (517)
157 PRK02603 photosystem I assembl 97.7 0.00034 7.4E-09 68.4 11.6 83 353-435 35-122 (172)
158 PLN03088 SGT1, suppressor of 97.7 0.00072 1.6E-08 74.2 15.2 87 359-445 8-96 (356)
159 KOG1130 Predicted G-alpha GTPa 97.7 0.00018 3.8E-09 75.7 9.6 128 318-445 196-341 (639)
160 PRK10153 DNA-binding transcrip 97.7 0.0018 3.9E-08 74.3 18.7 141 280-422 335-490 (517)
161 CHL00033 ycf3 photosystem I as 97.7 0.00053 1.2E-08 66.7 12.5 94 352-445 34-139 (168)
162 PF12895 Apc3: Anaphase-promot 97.6 8E-05 1.7E-09 63.2 5.4 77 366-443 2-82 (84)
163 PF09976 TPR_21: Tetratricopep 97.6 0.0016 3.4E-08 61.7 14.7 122 320-445 15-144 (145)
164 PF14559 TPR_19: Tetratricopep 97.6 2.5E-05 5.3E-10 63.3 1.7 50 396-445 2-51 (68)
165 PRK02603 photosystem I assembl 97.6 0.0018 4E-08 63.2 14.6 131 281-434 34-166 (172)
166 COG3898 Uncharacterized membra 97.6 0.15 3.3E-06 54.1 28.8 269 162-444 96-388 (531)
167 cd00189 TPR Tetratricopeptide 97.6 0.0011 2.4E-08 56.0 11.4 93 322-416 5-99 (100)
168 COG4700 Uncharacterized protei 97.5 0.0081 1.8E-07 57.1 17.5 125 314-440 86-214 (251)
169 TIGR00756 PPR pentatricopeptid 97.5 0.00014 3.1E-09 49.8 4.3 33 82-114 2-34 (35)
170 KOG0550 Molecular chaperone (D 97.5 0.013 2.7E-07 62.5 19.7 297 89-426 58-361 (486)
171 PF13371 TPR_9: Tetratricopept 97.5 0.00028 6.1E-09 57.9 6.1 55 392-446 2-56 (73)
172 PF13812 PPR_3: Pentatricopept 97.4 0.00019 4.1E-09 49.0 4.1 33 81-113 2-34 (34)
173 KOG2041 WD40 repeat protein [G 97.4 0.28 6E-06 55.7 30.2 68 129-205 748-820 (1189)
174 TIGR00756 PPR pentatricopeptid 97.4 0.00026 5.7E-09 48.5 4.5 33 284-316 2-34 (35)
175 PF13432 TPR_16: Tetratricopep 97.4 0.00088 1.9E-08 53.5 7.7 61 359-419 3-65 (65)
176 COG3898 Uncharacterized membra 97.4 0.3 6.4E-06 52.0 30.5 312 64-390 68-400 (531)
177 PF12895 Apc3: Anaphase-promot 97.3 0.00086 1.9E-08 56.8 7.5 79 296-377 3-82 (84)
178 PRK15363 pathogenicity island 97.3 0.0067 1.5E-07 57.0 14.0 91 256-347 40-133 (157)
179 PF14938 SNAP: Soluble NSF att 97.3 0.016 3.6E-07 61.4 18.9 20 188-207 42-61 (282)
180 KOG2041 WD40 repeat protein [G 97.3 0.11 2.3E-06 58.9 24.8 187 163-379 747-949 (1189)
181 PF05843 Suf: Suppressor of fo 97.2 0.011 2.4E-07 62.7 16.7 132 283-417 2-139 (280)
182 PF07079 DUF1347: Protein of u 97.2 0.45 9.7E-06 51.8 37.9 61 384-445 459-521 (549)
183 CHL00033 ycf3 photosystem I as 97.2 0.0074 1.6E-07 58.6 13.9 63 283-345 36-100 (168)
184 PF13812 PPR_3: Pentatricopept 97.2 0.00064 1.4E-08 46.3 4.5 33 283-315 2-34 (34)
185 KOG1130 Predicted G-alpha GTPa 97.2 0.013 2.9E-07 62.1 16.0 152 285-436 198-372 (639)
186 KOG2053 Mitochondrial inherita 97.2 0.86 1.9E-05 53.7 41.1 422 7-440 34-562 (932)
187 COG4235 Cytochrome c biogenesi 97.1 0.011 2.4E-07 61.1 14.5 98 349-446 152-254 (287)
188 PRK10866 outer membrane biogen 97.1 0.021 4.5E-07 59.1 16.8 172 257-445 38-238 (243)
189 PF14938 SNAP: Soluble NSF att 97.1 0.033 7.1E-07 59.2 18.7 34 64-108 30-63 (282)
190 PRK10866 outer membrane biogen 97.1 0.22 4.7E-06 51.5 23.8 65 180-246 31-99 (243)
191 PF13414 TPR_11: TPR repeat; P 97.1 0.0018 4E-08 52.3 6.7 65 352-416 2-69 (69)
192 COG4700 Uncharacterized protei 97.1 0.12 2.6E-06 49.5 19.2 99 213-311 86-189 (251)
193 PF12688 TPR_5: Tetratrico pep 97.0 0.0089 1.9E-07 54.2 11.4 84 358-441 6-97 (120)
194 KOG1538 Uncharacterized conser 97.0 0.15 3.2E-06 57.3 22.3 176 137-380 622-800 (1081)
195 PF14559 TPR_19: Tetratricopep 97.0 0.0012 2.6E-08 53.2 5.1 61 365-425 3-65 (68)
196 PRK10803 tol-pal system protei 97.0 0.0043 9.2E-08 64.7 10.2 101 319-419 145-251 (263)
197 PF13431 TPR_17: Tetratricopep 96.9 0.00051 1.1E-08 47.0 2.0 34 407-440 1-34 (34)
198 PRK15331 chaperone protein Sic 96.9 0.01 2.2E-07 56.1 11.3 89 358-446 42-132 (165)
199 PF01535 PPR: PPR repeat; Int 96.9 0.00081 1.7E-08 44.7 3.0 30 82-111 2-31 (31)
200 PF13281 DUF4071: Domain of un 96.9 0.11 2.3E-06 56.5 20.3 159 256-417 146-337 (374)
201 KOG1538 Uncharacterized conser 96.9 0.029 6.2E-07 62.7 15.7 262 113-442 554-827 (1081)
202 KOG0543 FKBP-type peptidyl-pro 96.9 0.019 4.1E-07 61.5 13.8 93 353-445 257-352 (397)
203 PF04840 Vps16_C: Vps16, C-ter 96.8 0.94 2E-05 48.7 29.2 118 255-392 181-298 (319)
204 PF08579 RPM2: Mitochondrial r 96.8 0.014 3.1E-07 51.1 10.2 81 82-162 27-116 (120)
205 PF12688 TPR_5: Tetratrico pep 96.8 0.046 9.9E-07 49.6 13.9 94 286-379 5-101 (120)
206 PF04840 Vps16_C: Vps16, C-ter 96.8 0.62 1.3E-05 50.1 24.8 271 117-441 2-284 (319)
207 COG4235 Cytochrome c biogenesi 96.7 0.078 1.7E-06 54.9 16.9 114 304-420 144-262 (287)
208 PF01535 PPR: PPR repeat; Int 96.7 0.0018 3.9E-08 42.9 3.5 30 284-313 2-31 (31)
209 COG5107 RNA14 Pre-mRNA 3'-end 96.7 1.2 2.7E-05 48.3 28.0 407 30-445 27-528 (660)
210 PF05843 Suf: Suppressor of fo 96.7 0.042 9.1E-07 58.2 15.1 128 81-210 2-136 (280)
211 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0065 1.4E-07 66.5 8.9 62 353-414 75-141 (453)
212 PF13525 YfiO: Outer membrane 96.6 0.055 1.2E-06 54.3 15.0 166 258-440 12-199 (203)
213 KOG2280 Vacuolar assembly/sort 96.6 2.2 4.7E-05 49.5 32.9 317 108-441 425-792 (829)
214 PF13371 TPR_9: Tetratricopept 96.6 0.0082 1.8E-07 49.0 7.1 66 360-425 2-69 (73)
215 PF13428 TPR_14: Tetratricopep 96.6 0.0036 7.8E-08 45.7 4.3 42 386-427 2-43 (44)
216 PRK10803 tol-pal system protei 96.6 0.053 1.1E-06 56.6 14.6 96 284-379 145-243 (263)
217 KOG2796 Uncharacterized conser 96.6 0.1 2.2E-06 52.6 15.5 131 183-313 179-317 (366)
218 KOG0543 FKBP-type peptidyl-pro 96.5 0.0093 2E-07 63.8 8.5 75 385-481 257-331 (397)
219 PF10037 MRP-S27: Mitochondria 96.5 0.026 5.7E-07 62.4 12.3 117 45-163 64-186 (429)
220 KOG2796 Uncharacterized conser 96.5 0.15 3.2E-06 51.5 16.0 136 283-418 178-319 (366)
221 PF06239 ECSIT: Evolutionarily 96.4 0.048 1E-06 53.8 12.1 99 67-165 32-153 (228)
222 PF10037 MRP-S27: Mitochondria 96.4 0.035 7.5E-07 61.4 12.5 116 149-264 65-186 (429)
223 COG0457 NrfG FOG: TPR repeat [ 96.3 1.2 2.6E-05 43.8 28.6 221 195-417 37-268 (291)
224 PF13525 YfiO: Outer membrane 96.3 0.42 9.1E-06 47.9 19.0 60 86-145 11-72 (203)
225 COG0457 NrfG FOG: TPR repeat [ 96.3 1.3 2.9E-05 43.5 28.5 187 252-440 60-257 (291)
226 PF08579 RPM2: Mitochondrial r 96.3 0.077 1.7E-06 46.7 11.2 81 284-365 27-116 (120)
227 KOG2280 Vacuolar assembly/sort 96.2 3 6.5E-05 48.4 26.5 333 40-408 425-793 (829)
228 PF13424 TPR_12: Tetratricopep 96.2 0.01 2.2E-07 49.2 5.4 61 385-445 5-72 (78)
229 KOG1941 Acetylcholine receptor 96.0 0.1 2.3E-06 54.7 12.5 157 284-440 85-267 (518)
230 PF13424 TPR_12: Tetratricopep 95.9 0.017 3.7E-07 47.9 5.6 61 354-414 6-75 (78)
231 PF10300 DUF3808: Protein of u 95.8 4.4 9.5E-05 46.3 26.2 159 83-244 191-375 (468)
232 PF13512 TPR_18: Tetratricopep 95.7 0.28 6.1E-06 45.4 12.9 77 358-434 15-99 (142)
233 PRK11906 transcriptional regul 95.6 0.48 1E-05 52.4 16.5 143 297-442 273-430 (458)
234 PRK11906 transcriptional regul 95.6 0.19 4.1E-06 55.4 13.3 114 332-445 273-398 (458)
235 PF06239 ECSIT: Evolutionarily 95.5 0.17 3.8E-06 50.0 11.4 95 171-265 35-152 (228)
236 KOG1920 IkappaB kinase complex 95.4 2.5 5.5E-05 51.4 22.4 137 257-411 914-1052(1265)
237 PRK15331 chaperone protein Sic 95.4 0.33 7.1E-06 46.1 12.5 83 294-379 49-131 (165)
238 KOG1258 mRNA processing protei 95.3 6.8 0.00015 44.6 35.5 184 250-436 296-492 (577)
239 COG1729 Uncharacterized protei 95.3 0.087 1.9E-06 53.9 9.0 90 329-418 153-248 (262)
240 PF02259 FAT: FAT domain; Int 95.2 3.3 7.3E-05 45.1 22.5 154 280-436 144-309 (352)
241 KOG1941 Acetylcholine receptor 95.2 0.63 1.4E-05 49.1 15.0 54 326-379 215-272 (518)
242 COG4105 ComL DNA uptake lipopr 95.2 1.4 3.1E-05 44.8 17.1 55 391-445 173-230 (254)
243 COG3118 Thioredoxin domain-con 95.0 1.8 3.9E-05 45.0 17.5 146 290-437 142-290 (304)
244 PF13428 TPR_14: Tetratricopep 95.0 0.015 3.3E-07 42.3 1.9 42 419-482 1-42 (44)
245 PF03704 BTAD: Bacterial trans 94.8 0.62 1.3E-05 43.8 13.1 70 183-253 64-138 (146)
246 KOG1585 Protein required for f 94.8 1.6 3.4E-05 43.9 15.8 87 356-443 153-251 (308)
247 COG5107 RNA14 Pre-mRNA 3'-end 94.8 7.9 0.00017 42.4 32.2 369 70-445 30-492 (660)
248 PF03704 BTAD: Bacterial trans 94.8 0.16 3.5E-06 47.8 9.0 61 386-446 63-123 (146)
249 PF07079 DUF1347: Protein of u 94.7 8.4 0.00018 42.4 35.8 67 60-126 90-178 (549)
250 KOG1585 Protein required for f 94.7 2.6 5.7E-05 42.4 17.0 199 83-304 34-249 (308)
251 KOG1258 mRNA processing protei 94.5 11 0.00024 43.0 29.1 118 318-439 298-420 (577)
252 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 0.14 2.9E-06 56.4 8.6 63 315-380 73-139 (453)
253 KOG2114 Vacuolar assembly/sort 94.5 13 0.00029 43.9 25.9 55 358-413 710-764 (933)
254 PF13281 DUF4071: Domain of un 94.5 4.1 8.9E-05 44.4 19.6 75 86-160 147-227 (374)
255 PF04053 Coatomer_WDAD: Coatom 94.5 0.81 1.8E-05 51.5 14.9 128 61-211 273-403 (443)
256 KOG2066 Vacuolar assembly/sort 94.5 13 0.00028 43.6 26.1 138 60-208 367-532 (846)
257 COG4105 ComL DNA uptake lipopr 94.5 4.1 8.8E-05 41.7 18.2 58 186-244 172-232 (254)
258 KOG1920 IkappaB kinase complex 94.4 17 0.00036 44.8 25.6 149 265-441 894-1048(1265)
259 PF00515 TPR_1: Tetratricopept 94.3 0.086 1.9E-06 35.7 4.3 33 386-418 2-34 (34)
260 KOG2114 Vacuolar assembly/sort 94.2 16 0.00034 43.3 27.0 172 54-242 341-516 (933)
261 KOG1464 COP9 signalosome, subu 94.1 7.7 0.00017 39.6 19.1 242 163-410 40-328 (440)
262 PRK11619 lytic murein transgly 94.1 17 0.00036 43.3 33.2 16 61-76 45-60 (644)
263 PF07719 TPR_2: Tetratricopept 94.1 0.14 2.9E-06 34.5 4.9 33 386-418 2-34 (34)
264 COG3118 Thioredoxin domain-con 94.0 5.8 0.00012 41.4 18.5 54 225-279 143-196 (304)
265 PF04184 ST7: ST7 protein; In 93.9 8.5 0.00018 43.0 20.4 142 189-344 176-322 (539)
266 PF04184 ST7: ST7 protein; In 93.9 2.9 6.4E-05 46.5 16.9 121 319-440 261-406 (539)
267 KOG2610 Uncharacterized conser 93.9 1.1 2.4E-05 46.9 12.9 149 293-444 114-272 (491)
268 COG1729 Uncharacterized protei 93.8 0.92 2E-05 46.6 12.3 100 284-384 144-247 (262)
269 PF10300 DUF3808: Protein of u 93.8 3 6.4E-05 47.7 18.0 156 287-445 193-373 (468)
270 KOG4234 TPR repeat-containing 93.7 0.19 4.1E-06 48.7 6.8 105 325-431 103-214 (271)
271 PF04053 Coatomer_WDAD: Coatom 93.7 1.4 3E-05 49.6 14.9 157 191-380 271-429 (443)
272 KOG2610 Uncharacterized conser 93.7 0.55 1.2E-05 49.0 10.5 114 328-443 114-233 (491)
273 PF12921 ATP13: Mitochondrial 93.7 0.85 1.8E-05 41.7 10.8 53 312-364 47-99 (126)
274 PF13170 DUF4003: Protein of u 93.6 1.8 3.9E-05 46.0 14.7 151 5-159 52-226 (297)
275 COG4785 NlpI Lipoprotein NlpI, 93.6 3.2 6.8E-05 41.1 14.8 159 281-446 98-264 (297)
276 PF13512 TPR_18: Tetratricopep 93.6 2.5 5.4E-05 39.3 13.6 115 289-419 17-133 (142)
277 KOG4555 TPR repeat-containing 93.4 0.9 2E-05 41.0 10.0 89 326-416 52-146 (175)
278 KOG0890 Protein kinase of the 93.3 23 0.0005 46.9 25.4 307 120-445 1388-1728(2382)
279 KOG4648 Uncharacterized conser 93.2 0.2 4.2E-06 52.3 6.4 92 324-418 104-198 (536)
280 KOG4234 TPR repeat-containing 93.2 4.1 8.8E-05 39.8 14.6 81 362-442 104-191 (271)
281 KOG4555 TPR repeat-containing 93.0 0.81 1.7E-05 41.3 9.0 85 361-445 51-141 (175)
282 KOG2066 Vacuolar assembly/sort 92.7 25 0.00055 41.3 26.2 31 252-282 506-536 (846)
283 KOG3941 Intermediate in Toll s 92.6 0.91 2E-05 46.4 10.0 102 64-165 49-173 (406)
284 KOG1586 Protein required for f 92.4 5.8 0.00013 39.8 14.9 52 367-418 128-187 (288)
285 smart00299 CLH Clathrin heavy 92.3 5.7 0.00012 36.9 14.8 124 286-429 11-135 (140)
286 smart00299 CLH Clathrin heavy 92.2 7.8 0.00017 36.0 15.6 43 221-264 12-54 (140)
287 KOG4648 Uncharacterized conser 92.2 0.4 8.7E-06 50.1 7.0 78 363-440 107-186 (536)
288 PF06552 TOM20_plant: Plant sp 91.8 0.55 1.2E-05 45.1 7.0 35 400-434 50-84 (186)
289 PF08631 SPO22: Meiosis protei 91.6 20 0.00044 37.8 26.2 19 394-412 255-273 (278)
290 PF07719 TPR_2: Tetratricopept 91.4 0.22 4.8E-06 33.4 3.0 27 420-446 2-28 (34)
291 PF09205 DUF1955: Domain of un 91.2 8 0.00017 35.3 13.1 134 293-445 13-146 (161)
292 PF13181 TPR_8: Tetratricopept 91.1 0.4 8.7E-06 32.2 4.1 32 386-417 2-33 (34)
293 PF12921 ATP13: Mitochondrial 90.7 4.1 8.8E-05 37.3 11.4 50 111-160 48-98 (126)
294 COG4785 NlpI Lipoprotein NlpI, 90.5 20 0.00043 35.7 17.7 171 132-311 82-266 (297)
295 KOG1550 Extracellular protein 90.3 37 0.0008 39.7 21.9 268 166-445 228-535 (552)
296 PF08631 SPO22: Meiosis protei 90.2 27 0.00059 36.8 26.1 62 284-346 86-150 (278)
297 PF09205 DUF1955: Domain of un 90.2 15 0.00032 33.7 15.3 60 187-247 92-151 (161)
298 KOG3941 Intermediate in Toll s 90.1 2.1 4.6E-05 43.9 9.6 98 169-266 53-173 (406)
299 PF00515 TPR_1: Tetratricopept 89.8 0.28 6.1E-06 33.1 2.3 27 420-446 2-28 (34)
300 KOG1550 Extracellular protein 89.8 47 0.001 38.9 23.6 272 131-417 228-541 (552)
301 PF02259 FAT: FAT domain; Int 89.7 28 0.00061 37.7 19.5 55 187-245 4-58 (352)
302 COG2976 Uncharacterized protei 89.7 18 0.00038 35.5 15.0 115 300-417 70-191 (207)
303 KOG1464 COP9 signalosome, subu 89.6 4.6 9.9E-05 41.2 11.5 180 266-445 42-258 (440)
304 PF13176 TPR_7: Tetratricopept 89.1 0.65 1.4E-05 31.9 3.8 27 387-413 1-27 (36)
305 PRK09687 putative lyase; Provi 89.0 34 0.00073 36.2 28.8 126 280-417 140-266 (280)
306 PF09613 HrpB1_HrpK: Bacterial 88.7 12 0.00025 35.7 12.9 86 327-417 20-109 (160)
307 COG2909 MalT ATP-dependent tra 88.5 65 0.0014 38.8 28.1 215 125-342 425-684 (894)
308 KOG0276 Vesicle coat complex C 88.4 4.6 9.9E-05 45.8 11.5 104 159-279 646-749 (794)
309 PF07035 Mic1: Colon cancer-as 88.2 23 0.00049 34.1 14.8 134 101-245 15-149 (167)
310 PF13170 DUF4003: Protein of u 87.6 42 0.00092 35.7 18.3 49 198-246 79-133 (297)
311 KOG0545 Aryl-hydrocarbon recep 87.3 2.8 6.1E-05 42.2 8.2 53 388-440 233-285 (329)
312 PRK09687 putative lyase; Provi 87.2 43 0.00094 35.3 28.6 231 149-395 36-277 (280)
313 PF09613 HrpB1_HrpK: Bacterial 87.2 4.2 9E-05 38.6 9.0 70 365-434 22-93 (160)
314 PF10602 RPN7: 26S proteasome 86.5 16 0.00034 35.7 13.2 94 284-379 38-139 (177)
315 PF10345 Cohesin_load: Cohesin 86.4 79 0.0017 37.5 34.0 121 293-413 372-522 (608)
316 PF13374 TPR_10: Tetratricopep 85.6 1.8 3.9E-05 30.3 4.6 28 386-413 3-30 (42)
317 PF13174 TPR_6: Tetratricopept 85.5 1.6 3.4E-05 28.8 4.0 31 388-418 3-33 (33)
318 TIGR02561 HrpB1_HrpK type III 85.3 5.7 0.00012 37.1 8.6 49 397-445 22-70 (153)
319 KOG0890 Protein kinase of the 85.3 1.5E+02 0.0033 39.8 26.9 308 85-415 1388-1732(2382)
320 PF10602 RPN7: 26S proteasome 84.8 8.6 0.00019 37.5 10.3 64 81-144 37-102 (177)
321 PF13181 TPR_8: Tetratricopept 83.8 1 2.3E-05 30.1 2.5 27 420-446 2-28 (34)
322 COG2909 MalT ATP-dependent tra 83.5 1.1E+02 0.0024 36.9 27.5 211 227-440 426-680 (894)
323 PRK10941 hypothetical protein; 83.4 3.9 8.5E-05 42.7 7.7 57 387-443 183-239 (269)
324 KOG0376 Serine-threonine phosp 83.3 0.99 2.2E-05 49.8 3.3 83 363-445 14-98 (476)
325 PF10345 Cohesin_load: Cohesin 83.3 1.1E+02 0.0023 36.5 40.2 395 48-445 60-603 (608)
326 PF13176 TPR_7: Tetratricopept 83.2 2.5 5.4E-05 29.0 4.2 25 285-309 2-26 (36)
327 PF07035 Mic1: Colon cancer-as 82.7 47 0.001 32.0 15.5 125 73-208 22-147 (167)
328 COG1747 Uncharacterized N-term 82.6 91 0.002 35.2 23.8 175 249-430 64-250 (711)
329 PF04910 Tcf25: Transcriptiona 82.1 33 0.00071 37.7 14.7 62 384-445 99-165 (360)
330 COG2976 Uncharacterized protei 81.8 56 0.0012 32.2 15.5 56 188-245 133-188 (207)
331 PRK11619 lytic murein transgly 81.5 1.3E+02 0.0027 36.0 36.6 269 63-344 80-373 (644)
332 KOG0403 Neoplastic transformat 81.1 87 0.0019 34.7 16.5 26 83-108 217-242 (645)
333 COG4649 Uncharacterized protei 80.8 56 0.0012 31.5 14.5 131 79-210 58-196 (221)
334 COG3629 DnrI DNA-binding trans 80.6 15 0.00033 38.5 10.7 77 182-259 154-235 (280)
335 PF13431 TPR_17: Tetratricopep 80.2 2.6 5.6E-05 28.6 3.4 24 350-373 10-33 (34)
336 PF13174 TPR_6: Tetratricopept 80.1 2.1 4.6E-05 28.2 3.0 26 421-446 2-27 (33)
337 smart00028 TPR Tetratricopepti 80.0 3.6 7.8E-05 25.9 4.1 31 387-417 3-33 (34)
338 PF14853 Fis1_TPR_C: Fis1 C-te 79.5 7.7 0.00017 29.4 6.0 35 389-423 5-39 (53)
339 COG4455 ImpE Protein of avirul 78.8 7.9 0.00017 38.5 7.3 49 392-440 8-56 (273)
340 KOG4642 Chaperone-dependent E3 78.8 5.5 0.00012 40.1 6.4 73 368-440 25-99 (284)
341 COG4649 Uncharacterized protei 78.4 67 0.0014 31.0 14.6 23 323-345 173-195 (221)
342 PF03422 CBM_6: Carbohydrate b 78.3 40 0.00087 30.4 11.9 97 686-794 21-124 (125)
343 PF04097 Nic96: Nup93/Nic96; 78.2 1.6E+02 0.0034 35.1 22.5 60 85-145 116-182 (613)
344 PF04097 Nic96: Nup93/Nic96; 77.7 1.6E+02 0.0035 35.0 20.9 61 46-109 111-181 (613)
345 PF06552 TOM20_plant: Plant sp 77.4 14 0.00031 35.7 8.6 43 381-424 64-118 (186)
346 PF00629 MAM: MAM domain; Int 77.4 13 0.00028 34.9 8.8 81 708-795 70-155 (160)
347 KOG1586 Protein required for f 77.0 89 0.0019 31.7 20.5 22 293-314 165-186 (288)
348 PRK13800 putative oxidoreducta 76.9 2.1E+02 0.0045 35.9 28.9 241 170-432 624-865 (897)
349 COG3947 Response regulator con 76.9 74 0.0016 33.3 13.9 59 387-445 281-339 (361)
350 COG1747 Uncharacterized N-term 76.5 1.4E+02 0.0031 33.8 24.4 172 181-361 66-247 (711)
351 COG3629 DnrI DNA-binding trans 76.2 9.4 0.0002 40.0 7.6 57 388-444 156-212 (280)
352 KOG3824 Huntingtin interacting 75.5 5.9 0.00013 41.1 5.8 44 397-440 128-171 (472)
353 COG3947 Response regulator con 75.3 1.1E+02 0.0024 32.0 14.7 60 184-244 282-341 (361)
354 PF13762 MNE1: Mitochondrial s 75.2 70 0.0015 30.0 12.3 115 5-130 4-130 (145)
355 PF14561 TPR_20: Tetratricopep 74.5 8.1 0.00018 33.0 5.6 53 384-436 21-75 (90)
356 COG4976 Predicted methyltransf 74.4 4.8 0.0001 40.2 4.6 52 395-446 5-56 (287)
357 KOG4507 Uncharacterized conser 74.0 7.1 0.00015 44.1 6.3 67 359-425 648-716 (886)
358 COG0790 FOG: TPR repeat, SEL1 73.5 1.3E+02 0.0027 31.8 20.0 61 370-433 172-236 (292)
359 KOG4570 Uncharacterized conser 73.3 33 0.00072 36.1 10.5 101 145-246 59-165 (418)
360 PF13929 mRNA_stabil: mRNA sta 72.2 99 0.0021 32.5 13.7 110 95-204 143-261 (292)
361 KOG2471 TPR repeat-containing 72.1 1.1E+02 0.0024 34.4 14.5 50 260-309 249-310 (696)
362 KOG0276 Vesicle coat complex C 72.1 34 0.00074 39.2 10.9 97 61-174 649-745 (794)
363 PF11207 DUF2989: Protein of u 71.9 20 0.00043 35.5 8.2 74 364-439 118-198 (203)
364 PRK15180 Vi polysaccharide bio 71.8 31 0.00066 38.3 10.3 123 292-418 299-424 (831)
365 PF00637 Clathrin: Region in C 71.1 4.8 0.0001 37.5 3.8 47 193-239 19-65 (143)
366 PRK15180 Vi polysaccharide bio 71.0 63 0.0014 36.0 12.3 117 327-445 299-417 (831)
367 PF07721 TPR_4: Tetratricopept 70.8 5.8 0.00013 24.9 2.9 24 420-443 2-25 (26)
368 KOG4570 Uncharacterized conser 70.6 43 0.00094 35.3 10.6 99 246-346 59-164 (418)
369 smart00028 TPR Tetratricopepti 70.6 9.4 0.0002 23.7 4.2 26 420-445 2-27 (34)
370 PF04190 DUF410: Protein of un 70.4 1.4E+02 0.0031 31.1 19.7 106 61-177 2-117 (260)
371 KOG4279 Serine/threonine prote 69.9 1.3E+02 0.0028 35.5 15.0 199 170-418 183-399 (1226)
372 PF13374 TPR_10: Tetratricopep 69.8 10 0.00022 26.3 4.5 27 283-309 3-29 (42)
373 KOG3364 Membrane protein invol 69.8 12 0.00027 34.2 5.8 71 350-420 29-106 (149)
374 KOG0551 Hsp90 co-chaperone CNS 69.4 30 0.00064 36.8 9.2 87 355-441 83-175 (390)
375 KOG2062 26S proteasome regulat 69.3 2.5E+02 0.0054 33.4 18.3 359 95-461 38-444 (929)
376 TIGR02561 HrpB1_HrpK type III 68.9 1E+02 0.0023 28.9 11.9 19 261-279 54-72 (153)
377 PF00637 Clathrin: Region in C 68.4 2.1 4.6E-05 39.9 0.8 84 222-308 13-96 (143)
378 PF11207 DUF2989: Protein of u 68.2 36 0.00079 33.7 9.1 69 132-201 123-198 (203)
379 cd00923 Cyt_c_Oxidase_Va Cytoc 67.8 42 0.0009 29.0 8.1 62 297-360 22-83 (103)
380 PRK13342 recombination factor 67.6 1.6E+02 0.0034 33.1 15.7 47 183-229 229-278 (413)
381 KOG2471 TPR repeat-containing 67.4 2.2E+02 0.0048 32.1 16.7 39 392-430 342-380 (696)
382 cd06263 MAM Meprin, A5 protein 67.0 18 0.00039 34.2 7.0 79 710-795 71-154 (157)
383 COG4455 ImpE Protein of avirul 66.0 62 0.0013 32.4 10.1 74 285-362 4-81 (273)
384 KOG4507 Uncharacterized conser 65.4 20 0.00043 40.7 7.4 82 364-445 618-702 (886)
385 KOG2300 Uncharacterized conser 63.7 2.6E+02 0.0056 31.6 33.7 148 292-441 333-507 (629)
386 KOG2396 HAT (Half-A-TPR) repea 63.5 2.6E+02 0.0057 31.7 22.9 60 288-348 466-527 (568)
387 KOG2063 Vacuolar assembly/sort 62.9 3.7E+02 0.008 33.1 21.9 314 118-442 310-707 (877)
388 smart00386 HAT HAT (Half-A-TPR 62.8 12 0.00027 24.1 3.5 31 399-429 1-31 (33)
389 KOG0376 Serine-threonine phosp 62.8 5.2 0.00011 44.3 2.5 54 392-445 11-65 (476)
390 PF02284 COX5A: Cytochrome c o 62.8 41 0.00088 29.3 7.2 70 290-361 16-87 (108)
391 PF14853 Fis1_TPR_C: Fis1 C-te 61.6 9.7 0.00021 28.9 3.0 27 420-446 2-28 (53)
392 COG5159 RPN6 26S proteasome re 61.4 2.1E+02 0.0046 29.9 20.7 192 87-278 10-233 (421)
393 PRK12798 chemotaxis protein; R 60.9 2.7E+02 0.0059 30.9 21.5 176 264-442 125-318 (421)
394 PF10579 Rapsyn_N: Rapsyn N-te 60.3 23 0.00049 29.3 5.1 44 397-440 18-64 (80)
395 PF04190 DUF410: Protein of un 60.1 2.2E+02 0.0048 29.6 21.1 83 249-346 88-170 (260)
396 KOG2581 26S proteasome regulat 59.8 2.8E+02 0.006 30.7 14.5 124 295-418 139-280 (493)
397 KOG2422 Uncharacterized conser 58.9 1.4E+02 0.003 34.3 12.5 52 394-445 351-404 (665)
398 PF07721 TPR_4: Tetratricopept 57.9 16 0.00036 22.8 3.2 19 358-376 6-24 (26)
399 COG0790 FOG: TPR repeat, SEL1 57.6 2.5E+02 0.0054 29.5 23.3 47 165-211 92-143 (292)
400 PRK13342 recombination factor 57.6 3.2E+02 0.0068 30.7 15.8 44 285-328 230-276 (413)
401 PF07589 VPEP: PEP-CTERM motif 57.4 9.2 0.0002 24.0 1.9 20 795-814 1-20 (25)
402 COG5159 RPN6 26S proteasome re 57.0 2.5E+02 0.0055 29.4 15.6 50 187-236 9-65 (421)
403 KOG0991 Replication factor C, 56.4 2.4E+02 0.0051 28.8 14.8 49 382-431 236-284 (333)
404 PF14863 Alkyl_sulf_dimr: Alky 56.3 56 0.0012 30.5 7.8 66 369-437 57-122 (141)
405 PF09670 Cas_Cas02710: CRISPR- 56.3 2E+02 0.0044 31.8 13.6 54 291-345 140-197 (379)
406 TIGR02508 type_III_yscG type I 55.7 1.4E+02 0.0031 26.0 9.9 78 232-312 21-98 (115)
407 KOG4642 Chaperone-dependent E3 54.7 6.9 0.00015 39.4 1.6 68 394-484 19-87 (284)
408 PRK13800 putative oxidoreducta 54.5 5.3E+02 0.012 32.3 32.6 254 70-345 625-880 (897)
409 TIGR02508 type_III_yscG type I 54.4 77 0.0017 27.6 7.4 58 50-109 40-97 (115)
410 cd00923 Cyt_c_Oxidase_Va Cytoc 54.3 71 0.0015 27.6 7.2 47 199-245 25-71 (103)
411 PF08424 NRDE-2: NRDE-2, neces 53.1 3.2E+02 0.007 29.4 17.2 115 298-415 47-184 (321)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 52.7 86 0.0019 28.6 8.4 43 403-445 81-125 (126)
413 PF07163 Pex26: Pex26 protein; 52.1 1.4E+02 0.0031 31.1 10.4 88 289-377 90-182 (309)
414 smart00137 MAM Domain in mepri 51.8 68 0.0015 30.6 8.0 78 710-795 75-158 (161)
415 KOG2300 Uncharacterized conser 51.6 4.1E+02 0.0088 30.1 32.4 113 329-444 335-470 (629)
416 PF10255 Paf67: RNA polymerase 51.4 2.1E+02 0.0046 31.8 12.5 93 355-453 124-226 (404)
417 KOG0687 26S proteasome regulat 51.4 3.4E+02 0.0073 29.1 14.6 92 151-244 105-209 (393)
418 PF07163 Pex26: Pex26 protein; 51.2 1.3E+02 0.0028 31.4 9.9 85 87-173 90-181 (309)
419 KOG3364 Membrane protein invol 51.2 2.1E+02 0.0045 26.6 10.7 64 316-379 31-97 (149)
420 KOG0530 Protein farnesyltransf 50.4 49 0.0011 34.1 6.7 181 292-500 53-247 (318)
421 COG4941 Predicted RNA polymera 50.3 2.8E+02 0.006 29.9 12.3 121 296-420 270-400 (415)
422 PF04762 IKI3: IKI3 family; I 49.7 5.2E+02 0.011 32.5 17.0 119 296-441 792-923 (928)
423 PF09986 DUF2225: Uncharacteri 49.0 75 0.0016 32.0 8.1 59 387-445 120-191 (214)
424 PF14561 TPR_20: Tetratricopep 48.2 1.6E+02 0.0036 25.0 8.9 30 350-379 19-48 (90)
425 KOG1114 Tripeptidyl peptidase 48.0 5E+02 0.011 32.0 15.1 45 355-399 1233-1281(1304)
426 TIGR03504 FimV_Cterm FimV C-te 47.4 37 0.00081 24.6 4.0 24 288-311 5-28 (44)
427 PF15425 DUF4627: Domain of un 47.2 2.7E+02 0.0059 26.9 11.3 75 629-718 6-95 (212)
428 KOG1308 Hsp70-interacting prot 47.0 12 0.00026 39.8 1.9 81 365-445 126-208 (377)
429 PF11846 DUF3366: Domain of un 46.6 72 0.0016 31.4 7.5 37 380-416 139-175 (193)
430 PRK10941 hypothetical protein; 46.6 2.2E+02 0.0048 29.8 11.3 71 286-357 185-255 (269)
431 PF13934 ELYS: Nuclear pore co 46.2 1.8E+02 0.004 29.5 10.5 20 323-342 114-133 (226)
432 PF09477 Type_III_YscG: Bacter 45.8 2.2E+02 0.0047 25.3 9.0 80 230-312 20-99 (116)
433 KOG1498 26S proteasome regulat 45.6 4.5E+02 0.0098 28.9 15.9 92 288-379 137-238 (439)
434 PF12968 DUF3856: Domain of Un 45.5 1.1E+02 0.0024 27.6 7.2 61 385-445 55-126 (144)
435 PF10579 Rapsyn_N: Rapsyn N-te 45.4 53 0.0011 27.2 5.0 16 391-406 49-64 (80)
436 PF02284 COX5A: Cytochrome c o 44.6 1.3E+02 0.0028 26.3 7.4 46 380-425 40-85 (108)
437 TIGR03504 FimV_Cterm FimV C-te 44.5 44 0.00094 24.3 4.0 23 187-209 5-27 (44)
438 PF12862 Apc5: Anaphase-promot 44.2 78 0.0017 27.1 6.4 50 396-445 9-67 (94)
439 cd08819 CARD_MDA5_2 Caspase ac 44.0 1.3E+02 0.0029 25.4 7.2 64 135-200 22-85 (88)
440 KOG3807 Predicted membrane pro 43.8 4.4E+02 0.0095 28.2 15.7 54 287-342 280-336 (556)
441 KOG4279 Serine/threonine prote 42.7 2.2E+02 0.0048 33.8 11.0 168 233-411 180-370 (1226)
442 PF11846 DUF3366: Domain of un 42.5 91 0.002 30.7 7.5 31 349-379 140-170 (193)
443 COG5187 RPN7 26S proteasome re 41.8 4.4E+02 0.0096 27.7 12.7 93 150-244 115-220 (412)
444 PF08308 PEGA: PEGA domain; I 41.3 57 0.0012 26.1 4.8 36 681-718 29-67 (71)
445 cd08523 Reeler_cohesin_like Do 41.3 1.7E+02 0.0036 26.7 8.1 30 706-738 9-40 (124)
446 PF11838 ERAP1_C: ERAP1-like C 41.2 4.6E+02 0.01 27.8 19.3 157 51-209 40-229 (324)
447 PF10366 Vps39_1: Vacuolar sor 41.1 98 0.0021 27.4 6.6 27 284-310 41-67 (108)
448 KOG0292 Vesicle coat complex C 40.8 2.5E+02 0.0055 34.0 11.3 176 194-413 606-781 (1202)
449 KOG0686 COP9 signalosome, subu 40.8 5.4E+02 0.012 28.5 15.9 59 151-209 151-215 (466)
450 PF13934 ELYS: Nuclear pore co 40.6 2.5E+02 0.0055 28.5 10.5 120 83-213 79-201 (226)
451 PF07064 RIC1: RIC1; InterPro 39.4 4.6E+02 0.01 27.3 15.7 27 82-108 84-110 (258)
452 PRK14700 recombination factor 39.1 5E+02 0.011 27.6 15.6 138 12-164 18-175 (300)
453 PF14669 Asp_Glu_race_2: Putat 38.7 4E+02 0.0087 26.3 13.6 55 221-275 137-205 (233)
454 PF08424 NRDE-2: NRDE-2, neces 38.4 5.3E+02 0.012 27.7 16.9 62 198-261 48-109 (321)
455 KOG3824 Huntingtin interacting 37.8 48 0.001 34.8 4.5 62 363-424 126-189 (472)
456 COG4976 Predicted methyltransf 37.2 47 0.001 33.5 4.2 58 362-419 4-63 (287)
457 PF07720 TPR_3: Tetratricopept 36.5 1.1E+02 0.0024 21.0 4.8 27 390-416 6-34 (36)
458 PRK13184 pknD serine/threonine 36.2 9.7E+02 0.021 30.1 27.5 144 296-442 670-827 (932)
459 KOG0991 Replication factor C, 36.1 4.9E+02 0.011 26.6 11.3 55 272-328 229-283 (333)
460 KOG0889 Histone acetyltransfer 36.1 1.6E+03 0.034 32.5 22.2 425 11-456 2450-2904(3550)
461 PF12069 DUF3549: Protein of u 35.8 6E+02 0.013 27.5 13.9 168 48-227 130-309 (340)
462 PF14689 SPOB_a: Sensor_kinase 35.7 54 0.0012 25.7 3.6 24 286-309 27-50 (62)
463 PF04762 IKI3: IKI3 family; I 35.3 7.9E+02 0.017 30.9 15.5 29 252-280 813-843 (928)
464 KOG2422 Uncharacterized conser 35.0 7.8E+02 0.017 28.6 14.4 24 284-307 286-309 (665)
465 PF15469 Sec5: Exocyst complex 34.8 4.3E+02 0.0094 25.6 12.2 88 322-425 91-179 (182)
466 KOG3807 Predicted membrane pro 34.6 6.1E+02 0.013 27.2 14.6 57 358-414 280-340 (556)
467 PF14299 PP2: Phloem protein 2 34.3 2.5E+02 0.0054 26.6 8.7 87 706-795 56-153 (154)
468 PF13929 mRNA_stabil: mRNA sta 33.6 6E+02 0.013 26.9 19.7 111 197-307 144-263 (292)
469 PF04910 Tcf25: Transcriptiona 33.5 6.8E+02 0.015 27.5 17.4 58 187-244 109-167 (360)
470 PF14689 SPOB_a: Sensor_kinase 33.3 1E+02 0.0023 24.1 4.9 23 186-208 28-50 (62)
471 smart00777 Mad3_BUB1_I Mad3/BU 33.0 2.7E+02 0.0057 25.5 8.1 42 402-443 80-123 (125)
472 PF11980 DUF3481: Domain of un 32.9 27 0.00059 28.8 1.5 14 786-799 2-15 (87)
473 PF09670 Cas_Cas02710: CRISPR- 32.8 6.6E+02 0.014 27.8 13.0 55 190-245 140-198 (379)
474 PF11476 TgMIC1: Toxoplasma go 32.7 2.4E+02 0.0053 24.6 7.2 48 706-763 13-68 (137)
475 COG5191 Uncharacterized conser 32.6 94 0.002 32.8 5.7 78 349-426 103-183 (435)
476 KOG0545 Aryl-hydrocarbon recep 32.4 5.8E+02 0.013 26.3 14.3 68 354-421 231-300 (329)
477 PF08311 Mad3_BUB1_I: Mad3/BUB 32.4 3.3E+02 0.0071 24.8 8.9 42 98-139 81-123 (126)
478 PF07575 Nucleopor_Nup85: Nup8 32.1 1.6E+02 0.0035 34.6 8.5 60 114-175 404-463 (566)
479 PRK07003 DNA polymerase III su 31.9 7.7E+02 0.017 30.1 13.6 33 39-75 192-224 (830)
480 PF12862 Apc5: Anaphase-promot 31.9 2.7E+02 0.0059 23.6 7.8 21 325-345 49-69 (94)
481 PF11768 DUF3312: Protein of u 31.2 5.4E+02 0.012 29.7 11.8 23 256-278 413-435 (545)
482 KOG0292 Vesicle coat complex C 30.9 5.2E+02 0.011 31.6 11.8 152 32-210 624-782 (1202)
483 cd08545 YcnI_like Reeler-like 30.8 72 0.0016 30.2 4.3 29 706-737 12-42 (152)
484 PRK14700 recombination factor 30.8 6.8E+02 0.015 26.6 15.7 124 111-247 63-197 (300)
485 PF10366 Vps39_1: Vacuolar sor 30.5 2E+02 0.0044 25.4 6.9 27 183-209 41-67 (108)
486 cd08819 CARD_MDA5_2 Caspase ac 30.3 2.9E+02 0.0063 23.4 7.2 35 264-299 49-83 (88)
487 KOG4567 GTPase-activating prot 30.1 4.7E+02 0.01 27.8 10.2 88 135-227 263-360 (370)
488 cd00280 TRFH Telomeric Repeat 30.0 4.7E+02 0.01 25.7 9.5 47 393-440 119-165 (200)
489 KOG2396 HAT (Half-A-TPR) repea 29.7 8.9E+02 0.019 27.7 38.5 234 200-442 301-553 (568)
490 KOG4077 Cytochrome c oxidase, 29.4 3E+02 0.0066 25.2 7.5 59 300-360 67-125 (149)
491 TIGR02148 Fibro_Slime fibro-sl 29.3 1.2E+02 0.0027 25.7 4.9 36 681-718 31-72 (90)
492 PF04781 DUF627: Protein of un 29.1 3.3E+02 0.0072 24.3 7.7 38 403-440 62-99 (111)
493 PF12968 DUF3856: Domain of Un 28.9 4.5E+02 0.0097 23.9 9.9 61 353-413 55-128 (144)
494 PF11817 Foie-gras_1: Foie gra 28.5 1.6E+02 0.0036 30.3 7.0 79 333-414 161-247 (247)
495 COG2912 Uncharacterized conser 28.2 1.4E+02 0.0031 31.0 6.2 51 391-441 187-237 (269)
496 PF07575 Nucleopor_Nup85: Nup8 28.1 3.8E+02 0.0083 31.5 10.8 24 296-319 509-532 (566)
497 PF10475 DUF2450: Protein of u 28.1 6.3E+02 0.014 26.7 11.5 164 52-226 103-275 (291)
498 TIGR02595 PEP_exosort PEP-CTER 28.0 58 0.0013 20.6 2.1 14 796-809 1-14 (26)
499 cd00280 TRFH Telomeric Repeat 27.8 3.5E+02 0.0076 26.5 8.2 32 361-392 119-150 (200)
500 KOG4521 Nuclear pore complex, 27.8 1.4E+03 0.03 29.2 15.7 161 85-245 925-1131(1480)
No 1
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-76 Score=618.31 Aligned_cols=333 Identities=38% Similarity=0.637 Sum_probs=310.8
Q ss_pred hhcccCCCCCCCCCCCCCCCCcceeeecCCCCCCCceeeceEEEEecCCe-----eecCCCCccccccccccchhhhhcc
Q 003457 455 ADILQNPDFESPPTNLTPNRSTPFVLLNGNNTIPGWTFEGTVQYVTASQT-----IRLPDNGHAIQLAQDGRINQTFAAD 529 (818)
Q Consensus 455 ~~~~~~~~~~~~~lel~P~~~~~~v~l~~~~~~~~w~~~~~v~~~~~~~~-----~~~p~~~~~~~~~~~~~i~~~~~~~ 529 (818)
+++..||.||+.+....|+.. +..+...+|+|...|.|+|+.++++ +..|+|+|++||+.++.|.|.+. .
T Consensus 27 ~nLL~NG~FE~gP~~~~~n~t----~~~g~s~LPgW~i~g~VeyI~s~~~~~~m~~~vP~G~~Av~LG~e~sI~Q~i~-t 101 (373)
T PLN03089 27 DGLLPNGDFETPPKKSQMNGT----VVIGKNAIPGWEISGFVEYISSGQKQGGMLLVVPEGAHAVRLGNEASISQTLT-V 101 (373)
T ss_pred CCeecCCCccCCCCcCCCCcc----cccCCCCCCCCEecCcEEEEeCCCccCceeEECCCCchhhhcCCCceEEEEEE-c
Confidence 478999999999977777644 5567799999999999999999986 78999999999999999999995 8
Q ss_pred cCCceeeeeeeccCCCcccccccceeeecCCCCceeeceeeccCCccchhhhccccccCCCceEEEEecCCCCCCCCCcc
Q 003457 530 GDDLIYILTLTLAPGGQNCSANANLVVSAPDSHGVYSLKQHYGKETWKSYGHYLGRWGQDEPINLVIRSQSTESDDNSTC 609 (818)
Q Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (818)
.+++.|.+||+++ |+|++.+.|+|+|+++++++|+||+|+++|||.|+|+| +|+++.++|+|||||+++| ++|
T Consensus 102 ~~G~~Y~LTFs~a---r~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F--~A~s~~t~l~F~~~~~~~D--~~C 174 (373)
T PLN03089 102 TKGSYYSLTFSAA---RTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAF--KAESDVVNLVFHNPGVEED--PAC 174 (373)
T ss_pred cCCCEEEEEEEec---CCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEE--EEecccEEEEEECcccCCC--Ccc
Confidence 9999999999987 99999999999999999999999999999999999887 7888999999999888654 699
Q ss_pred hhHHHHhhhcccCCCCCCCCCcccCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEE--eceeeeecCCceeccCCC
Q 003457 610 WPVIDMLLLKTSKTLVQGNDNLLLNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSV--IGTVKYIDSKHFYVPKGN 687 (818)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~l~~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~--~~~v~~i~~~~~~~~~g~ 687 (818)
||+||.+.++++.+|.+++||||+||+||+||++++|+++|+++||++++++++||||+| .|+||||+++||.||+|+
T Consensus 175 GPviD~VaIk~l~~P~p~~~Nll~NG~FE~Gp~~~~n~~~gvllp~~~~~~~s~LpgW~i~s~~~V~yids~h~~vp~G~ 254 (373)
T PLN03089 175 GPLIDAVAIKTLFPPRPTKDNLLKNGGFEEGPYVFPNSSWGVLLPPNIEDDTSPLPGWMIESLKAVKYIDSAHFSVPEGK 254 (373)
T ss_pred cceeeeEEEeeccCCCccccceeecCCcccCCcccCCCCceEEeCCccccCCCCCCCcEEecCccEEEEecCcccCCCCc
Confidence 999999999999999999999999999999999988999999999999999999999999 589999999999999999
Q ss_pred eeEEecC--CccceeeeeccccCCCeEEEEEecCcccCccccceEEEEeeCCcceeeEEEecccCCceeeeEEEEeccce
Q 003457 688 AAIEIVS--VSAGIQTATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLVQNFTVQSLGTGSVIKHSVTFKAGSGS 765 (818)
Q Consensus 688 ~~~~l~~--~~~~~q~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~~~~ 765 (818)
|||||.+ +++|.|.+. |+||++|+|||+||+|+++|++++.|+++++..+++|+|++.++++|++++|.|+|++++
T Consensus 255 ~aveL~~g~e~aI~Q~v~--T~~G~~Y~LsFs~g~a~~~c~gs~~V~a~ag~~~~~v~~~s~g~gg~~~~s~~F~A~s~~ 332 (373)
T PLN03089 255 RAVELVSGKESAIAQVVR--TVPGKSYNLSFTVGDANNGCHGSMMVEAFAGKDTQKVPYESQGKGGFKRASLRFKAVSNR 332 (373)
T ss_pred eEEEeccCCcceEEEEEE--ccCCCEEEEEEEEccCCCCCCCcEEEEEEeecccceEEEecCCCcceEEEEEEEEeccCC
Confidence 9999966 566779999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCcccccCC--CCccccccceeeeeeccCccc
Q 003457 766 TPISFISYNINQTKD--GVFCGPLIDDVVLRASHGFKL 801 (818)
Q Consensus 766 ~~~~f~~~~~~~~~~--~~~~gp~~d~v~~~~~~~~~~ 801 (818)
|||+|+|.+|++..+ +++|||+||||+|++++.+..
T Consensus 333 Trl~F~s~~y~~~~d~~~~~cGPvlDdV~v~~~~~~~~ 370 (373)
T PLN03089 333 TRITFYSSFYHTKSDDFGSLCGPVVDDVRVVPVRAPRA 370 (373)
T ss_pred EEEEEEEeecccccCcCCCcccceeeeEEEEEccCCcc
Confidence 999999988777544 899999999999999987754
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-64 Score=617.13 Aligned_cols=523 Identities=23% Similarity=0.398 Sum_probs=484.6
Q ss_pred CCCCChhHHHHHHHHhcCchHH---HHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHH
Q 003457 10 QPPLPIPPLSLLADKCKSMHQL---KQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTL 86 (818)
Q Consensus 10 ~~~p~~~tl~~ll~~c~~~~~~---~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~L 86 (818)
+.+||..||++++.+|+..+.. +++|..+++.|+.||..++|+|+.+| +++|++++|.++|++|+++|..+||+|
T Consensus 182 g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y--~k~g~~~~A~~lf~~m~~~d~~s~n~l 259 (857)
T PLN03077 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY--VKCGDVVSARLVFDRMPRRDCISWNAM 259 (857)
T ss_pred CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH--hcCCCHHHHHHHHhcCCCCCcchhHHH
Confidence 6889999999999999876654 89999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 003457 87 IRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDL 166 (818)
Q Consensus 87 i~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~ 166 (818)
|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|+.|+.+|+++|++
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 339 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003457 167 NNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRG 246 (818)
Q Consensus 167 ~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g 246 (818)
++|.++|++|.++|..+||.|+.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.|++++|.++++.+.+.|
T Consensus 340 ~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g 419 (857)
T PLN03077 340 GEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419 (857)
T ss_pred HHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 247 FEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSA 326 (818)
Q Consensus 247 ~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 326 (818)
+.++..+++.|+++|+++|++++|.++|++|.++|..+|+++|.+|++.|+.++|+++|++|.+ +++||..||+.++.+
T Consensus 420 ~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a 498 (857)
T PLN03077 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSA 498 (857)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 589999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhCC------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 327 CCHAGFIDVGRQIFGSMKRVYGI------------------------------EPKIEHYGCMVDLLGRCGKVLEAEELI 376 (818)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~g~------------------------------~p~~~~~~~Li~~~~~~g~~~~A~~~~ 376 (818)
|++.|+++.+.+++..+.+. |+ .+|..+|+.||.+|++.|+.++|+++|
T Consensus 499 ~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 499 CARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred HhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888877665 54 567778888888888889999999999
Q ss_pred HHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCcchHHHHHHHHHHhhchHHHHHHHHHH-----
Q 003457 377 KRM---VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIA---LEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ----- 445 (818)
Q Consensus 377 ~~m---~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~---~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~----- 445 (818)
++| ..+||..||+.++.+|.+.|++++|.++|++|.+ +.|+ ..+|.+++++|.+.|+++||.++++.|
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd 656 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCC
Confidence 988 3679999999999999999999999999999984 4566 789999999999999999999987664
Q ss_pred ----HHHHHHHhhhhcccCCCCC-CCCCCCCCCCCcceeeecCC-CCCCCceeeceEEEEecCCeeecCCCCcccccccc
Q 003457 446 ----VLFAGLASAADILQNPDFE-SPPTNLTPNRSTPFVLLNGN-NTIPGWTFEGTVQYVTASQTIRLPDNGHAIQLAQD 519 (818)
Q Consensus 446 ----~~ll~~~~~~~~~~~~~~~-~~~lel~P~~~~~~v~l~~~-~~~~~w~~~~~v~~~~~~~~~~~p~~~~~~~~~~~ 519 (818)
.+++.+|+.++..+.++.. +.+++++|+++.+|++|+|+ ...++|+.+.+++..|++.++.+.| |+|| ++++
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~-g~s~-ie~~ 734 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDP-GCSW-VEVK 734 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCC-CccE-EEEC
Confidence 3788999877766666643 45689999999999999998 7889999999999999999977777 9999 9999
Q ss_pred ccchhhhhcccCCceeeeeeeccCCCccccccccee
Q 003457 520 GRINQTFAADGDDLIYILTLTLAPGGQNCSANANLV 555 (818)
Q Consensus 520 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (818)
+++|.|+. ++++|++.+.+.
T Consensus 735 ~~~~~f~~----------------~d~~h~~~~~i~ 754 (857)
T PLN03077 735 GKVHAFLT----------------DDESHPQIKEIN 754 (857)
T ss_pred CEEEEEec----------------CCCCCcchHHHH
Confidence 99999986 557777766654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-62 Score=584.38 Aligned_cols=480 Identities=30% Similarity=0.504 Sum_probs=460.5
Q ss_pred CCCCChhHHHHHHHHhcCchHH---HHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHH
Q 003457 10 QPPLPIPPLSLLADKCKSMHQL---KQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTL 86 (818)
Q Consensus 10 ~~~p~~~tl~~ll~~c~~~~~~---~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~L 86 (818)
+..||..||++++.+|+..+.. +++|..|++.|+.||..+++.|+.+| +++|++++|.++|++|.+||..+||+|
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y--~k~g~~~~A~~lf~~m~~~~~~t~n~l 195 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH--VKCGMLIDARRLFDEMPERNLASWGTI 195 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH--hcCCCHHHHHHHHhcCCCCCeeeHHHH
Confidence 4679999999999999876544 89999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 003457 87 IRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDL 166 (818)
Q Consensus 87 i~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~ 166 (818)
|.+|++.|++++|+++|++|.+.|+.||..+|..++.+|++.|+.+.+.+++..+.+.|+.+|..++++|+++|+++|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003457 167 NNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRG 246 (818)
Q Consensus 167 ~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g 246 (818)
++|.++|++|.++|..+||.|+.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|
T Consensus 276 ~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355 (697)
T ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 247 FEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSA 326 (818)
Q Consensus 247 ~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 326 (818)
++++..+++.|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 435 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003457 327 CCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAER 406 (818)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~ 406 (818)
|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|+.+|+..+|++|+.+|..+|+++.|..
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999987799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeeecCCCC
Q 003457 407 VVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLLNGNNT 486 (818)
Q Consensus 407 ~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l~~~~~ 486 (818)
++++++++.|++...|..|+++|.+.|++++|.++++.| .-.++.+
T Consensus 516 ~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m----------------------------------~~~g~~k 561 (697)
T PLN03081 516 AAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL----------------------------------KRKGLSM 561 (697)
T ss_pred HHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH----------------------------------HHcCCcc
Confidence 999999999999999999999999999999999999999 3456778
Q ss_pred CCCcee---eceEEEEecCCeeecCCCCccccccccccchhhhhcccCCcee
Q 003457 487 IPGWTF---EGTVQYVTASQTIRLPDNGHAIQLAQDGRINQTFAADGDDLIY 535 (818)
Q Consensus 487 ~~~w~~---~~~v~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~ 535 (818)
.|||+| .+.++.|.++++ .|| ...+|++.+..+...|+.
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~-~h~---------~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDR-LHP---------QSREIYQKLDELMKEISE 603 (697)
T ss_pred CCCeeEEEECCeEEEEccCCC-CCc---------cHHHHHHHHHHHHHHHHH
Confidence 899988 678999999997 788 345788888777666654
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.3e-60 Score=577.47 Aligned_cols=480 Identities=30% Similarity=0.553 Sum_probs=460.9
Q ss_pred CCCCCChhHHHHHHHHhcCchH---HHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHH
Q 003457 9 RQPPLPIPPLSLLADKCKSMHQ---LKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNT 85 (818)
Q Consensus 9 ~~~~p~~~tl~~ll~~c~~~~~---~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~ 85 (818)
.+..||..||+.++.+|+..++ ++++|..+.+.|+.||..+||.|+.+| +++|++++|.++|++|.+||..+||+
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y--~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY--LSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH--HhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 3578999999999999977654 489999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 003457 86 LIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSD 165 (818)
Q Consensus 86 Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~ 165 (818)
||.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+++.|+.|+..+++.|+++|+++|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003457 166 LNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 166 ~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~ 245 (818)
+++|.++|++|.++|..+|+.++.+|++.|+.++|+++|++|.+ +++||..||..++.+|++.|+++.+.+++..+.+.
T Consensus 440 ~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~ 518 (857)
T PLN03077 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT 518 (857)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999986 58999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003457 246 GFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLS 325 (818)
Q Consensus 246 g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 325 (818)
|+.++..++++|+++|+++|++++|.++|+.+ ++|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.
T Consensus 519 g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 597 (857)
T PLN03077 519 GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLC 597 (857)
T ss_pred CCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003457 326 ACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAE 405 (818)
Q Consensus 326 a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~ 405 (818)
+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|.+.|++++|.+++++|+.+||..+|++|+.+|..+|+.+.++
T Consensus 598 a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 598 ACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 99999999999999999997779999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeeecCCC
Q 003457 406 RVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLLNGNN 485 (818)
Q Consensus 406 ~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l~~~~ 485 (818)
...++++++.|++...|..|+++|.+.|+|++|.++++.| .-.++.
T Consensus 678 ~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M----------------------------------~~~g~~ 723 (857)
T PLN03077 678 LAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM----------------------------------RENGLT 723 (857)
T ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHH----------------------------------HHcCCC
Confidence 9999999999999999999999999999999999999999 345678
Q ss_pred CCCCcee---eceEEEEecCCeeecCCCCccccccccccchhhhhcccCCceee
Q 003457 486 TIPGWTF---EGTVQYVTASQTIRLPDNGHAIQLAQDGRINQTFAADGDDLIYI 536 (818)
Q Consensus 486 ~~~~w~~---~~~v~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 536 (818)
+.|||+| .+.|+.|..+++ .|| ...+|+.++..+.+.|+..
T Consensus 724 k~~g~s~ie~~~~~~~f~~~d~-~h~---------~~~~i~~~l~~l~~~~~~~ 767 (857)
T PLN03077 724 VDPGCSWVEVKGKVHAFLTDDE-SHP---------QIKEINTVLEGFYEKMKAS 767 (857)
T ss_pred CCCCccEEEECCEEEEEecCCC-CCc---------chHHHHHHHHHHHHHHHhC
Confidence 9999988 688999999997 888 4558899888777777653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-50 Score=488.24 Aligned_cols=428 Identities=18% Similarity=0.293 Sum_probs=396.2
Q ss_pred CChhHHHHHHHHhcCchH---HHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC----CCCHHHHHH
Q 003457 13 LPIPPLSLLADKCKSMHQ---LKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQ----SPNHFMWNT 85 (818)
Q Consensus 13 p~~~tl~~ll~~c~~~~~---~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~----~p~~~~yn~ 85 (818)
||..+|+.++.+|+..+. +.++|+.|.+.|+.||..+|+.|+.+| ++.|++++|.++|++|. .||..+|+.
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y--~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna 512 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTC--AKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 999999999999976654 489999999999999999999999999 99999999999999998 589999999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhC
Q 003457 86 LIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSK--SGLDLDLHVVNCLVRCYSVS 163 (818)
Q Consensus 86 Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~Li~~y~~~ 163 (818)
||.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .++.||..+|++|+.+|++.
T Consensus 513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~ 592 (1060)
T PLN03218 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999986 57899999999999999999
Q ss_pred CChHHHHHHHHHhhcC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003457 164 SDLNNARQVFDEIRNR----TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVH 239 (818)
Q Consensus 164 g~~~~A~~l~~~m~~~----d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~ 239 (818)
|++++|.++|++|.+. +..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.+++
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999875 568999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003457 240 VFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMP----ERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVP 315 (818)
Q Consensus 240 ~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~----~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 315 (818)
++|.+.|+.|+..+|+.|+.+|+++|++++|.++|++|. .||..+|+.||.+|++.|++++|+++|++|.+.|+.|
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999995 5899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----c-------------------CCHHHH
Q 003457 316 NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR----C-------------------GKVLEA 372 (818)
Q Consensus 316 d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~----~-------------------g~~~~A 372 (818)
|..||+.++.+|++.|++++|.++|++|.+. |+.||..+|+.|+.+|.+ + +..++|
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A 831 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA 831 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH
Confidence 9999999999999999999999999999988 999999999999876432 2 124679
Q ss_pred HHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 373 EELIKRM---VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIAL-EPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 373 ~~~~~~m---~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~-~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+.+|++| +..||..+|+.++.++...+..+.+..+++.+... .+.+...|+.|++.+.+. .++|..+++.|
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 9999999 47899999999998777888888888888776532 344577899999887432 36899988888
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-52 Score=500.98 Aligned_cols=447 Identities=22% Similarity=0.358 Sum_probs=392.8
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003457 77 SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTG-FAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNC 155 (818)
Q Consensus 77 ~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g-~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 155 (818)
.++..+|+.+|..|.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.+.+++..|++.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4567799999999999999999999999998864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003457 156 LVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELG 235 (818)
Q Consensus 156 Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A 235 (818)
|+.+|++.|++++|.++|++|.++|..+||.++.+|++.|++++|+++|++|.+.|+.||..||..++.+|.+.|+.+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003457 236 EKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVP 315 (818)
Q Consensus 236 ~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 315 (818)
.+++..+.+.|+.+|..+++.|+++|+++|++++|.++|++|.++|+.+||+|+.+|++.|++++|+++|++|.+.|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC---------------
Q 003457 316 NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--------------- 380 (818)
Q Consensus 316 d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--------------- 380 (818)
|..||+.++.+|++.|++++|.++++.|.+. |+.||..+|+.|+++|+++|++++|.++|++|.
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 9999999999999999999999999999887 888877777777777777777777777777664
Q ss_pred -------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCcchHHHHHHHHHHhhchHHH
Q 003457 381 -------------------WKPDVVMWGALLAACKNHGNIEVAERVVKEIIA---LEPNNHGVYVVLSNMYAEAESMKMQ 438 (818)
Q Consensus 381 -------------------~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~---~~P~~~~~y~~L~~~l~~~G~~~eA 438 (818)
..||..||+.++.+|.+.|++++|.++|++|.+ +.|+ ..+|.+++++|.+.|++++|
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-AMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-ccchHhHHHHHHhcCCHHHH
Confidence 345555555555555555555555555555543 2344 67899999999999999999
Q ss_pred HHHHHHH---------HHHHHHHhhhhcccCCCC-CCCCCCCCCCCCcceeeecCC-CCCCCceeeceEEEEecCCeeec
Q 003457 439 LEILLVQ---------VLFAGLASAADILQNPDF-ESPPTNLTPNRSTPFVLLNGN-NTIPGWTFEGTVQYVTASQTIRL 507 (818)
Q Consensus 439 ~~l~~~~---------~~ll~~~~~~~~~~~~~~-~~~~lel~P~~~~~~v~l~~~-~~~~~w~~~~~v~~~~~~~~~~~ 507 (818)
.++++.+ .+++.+|+.++..+.++. .+..++++|++...|+.|.+. ...+.|+.+.+++..|.+.++.+
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 9977543 377888876665554443 344578999999999999998 88899999999999999999777
Q ss_pred CCCCccccccccccchhhhh
Q 003457 508 PDNGHAIQLAQDGRINQTFA 527 (818)
Q Consensus 508 p~~~~~~~~~~~~~i~~~~~ 527 (818)
+| |+|| ++.++++|.|+.
T Consensus 562 ~~-g~s~-i~~~~~~~~f~~ 579 (697)
T PLN03081 562 HP-ACTW-IEVKKQDHSFFS 579 (697)
T ss_pred CC-CeeE-EEECCeEEEEcc
Confidence 77 7999 899999999986
No 7
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.2e-50 Score=481.83 Aligned_cols=416 Identities=15% Similarity=0.294 Sum_probs=392.0
Q ss_pred CCCChhHHHHHHHHh---cCchHHHHHHHHHHHhCCC-CChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHH
Q 003457 11 PPLPIPPLSLLADKC---KSMHQLKQIHAQMIISSRI-QDHFAASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTL 86 (818)
Q Consensus 11 ~~p~~~tl~~ll~~c---~~~~~~~~~~~~~~~~g~~-~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~L 86 (818)
..++...|..++..| ++..++.++++.|.+.|.. ++..+++.++..| .+.|.+++|.++|+.|..||..+|+.|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~--~~~g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKAC--KKQRAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH--HHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 345566777777776 5667779999999999964 6788888899999 999999999999999999999999999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 003457 87 IRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDL 166 (818)
Q Consensus 87 i~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~ 166 (818)
|.+|++.|++++|+++|++|++.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003457 167 NNARQVFDEIRN----RTLNVWTTMISGYAQSFRANEALMLFDQMLM--EGFEPNSVTLASVLSACAQSGCLELGEKVHV 240 (818)
Q Consensus 167 ~~A~~l~~~m~~----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~ 240 (818)
++|.++|++|.+ +|..+|+.|+.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999975 6889999999999999999999999999986 5789999999999999999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003457 241 FVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE----RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPN 316 (818)
Q Consensus 241 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd 316 (818)
+|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999985 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc---CCCCCHHHHHHHHH
Q 003457 317 DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM---VWKPDVVMWGALLA 393 (818)
Q Consensus 317 ~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m---~~~pd~~~~~~Li~ 393 (818)
..+|+.++.+|++.|++++|.++|++|.+. ++.||..+|+.||.+|++.|++++|+++|++| ...||..+|+.++.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999999999999999887 89999999999999999999999999999999 47799999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHH
Q 003457 394 ACKNHGNIEVAERVVKEIIALE--PNNHGVYVVLSNMYA 430 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~--P~~~~~y~~L~~~l~ 430 (818)
+|.+.|++++|.+++++|.+.+ |+ ...|++++.++.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd-~~tynsLIglc~ 800 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGLCL 800 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Confidence 9999999999999999999854 55 778888876643
No 8
>PLN03089 hypothetical protein; Provisional
Probab=100.00 E-value=5.6e-45 Score=380.64 Aligned_cols=175 Identities=27% Similarity=0.377 Sum_probs=153.3
Q ss_pred HHHHhhhcccCCCCCCCCCcccCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEEeceeeeecCCc------eeccC
Q 003457 612 VIDMLLLKTSKTLVQGNDNLLLNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSVIGTVKYIDSKH------FYVPK 685 (818)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~l~~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~v~~i~~~~------~~~~~ 685 (818)
+++++++.+...+...+||||+|||||+||.+. +.+.+ +.++.++||||+|+|+||||++|| |.||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~nLL~NG~FE~gP~~~-~~n~t------~~~g~s~LPgW~i~g~VeyI~s~~~~~~m~~~vP~ 82 (373)
T PLN03089 10 LLLLLLCAAAASAAPVTDGLLPNGDFETPPKKS-QMNGT------VVIGKNAIPGWEISGFVEYISSGQKQGGMLLVVPE 82 (373)
T ss_pred HHHHHHHhcccccccccCCeecCCCccCCCCcC-CCCcc------cccCCCCCCCCEecCcEEEEeCCCccCceeEECCC
Confidence 334444444444455599999999999999854 22223 445669999999999999999999 99999
Q ss_pred CCeeEEecCCccceeeeeccccCCCeEEEEEecCcccCccccceEEEEeeCCcceeeEEEecc-cCCceeeeEEEEeccc
Q 003457 686 GNAAIEIVSVSAGIQTATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLVQNFTVQSLG-TGSVIKHSVTFKAGSG 764 (818)
Q Consensus 686 g~~~~~l~~~~~~~q~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~f~a~~~ 764 (818)
|+|||||+++++|.|++. |++|++|+|||+ ++|+|+|++.|+|+|++++++||+||+| ++||++|+|+|+|+++
T Consensus 83 G~~Av~LG~e~sI~Q~i~--t~~G~~Y~LTFs---~ar~c~~~~~v~vsv~~~~~~~~~qt~~~~~gw~~~s~~F~A~s~ 157 (373)
T PLN03089 83 GAHAVRLGNEASISQTLT--VTKGSYYSLTFS---AARTCAQDESLNVSVPPESGVLPLQTLYSSSGWDSYAWAFKAESD 157 (373)
T ss_pred CchhhhcCCCceEEEEEE--ccCCCEEEEEEE---ecCCCCCCceEEEEecCCCcEEeeEEeccCCCcEEEEEEEEEecc
Confidence 999999988999999999 999999999999 5599999999999999999999999976 8899999999999999
Q ss_pred eeeEEEEeCcccccCCCCccccccceeeeeeccCccc
Q 003457 765 STPISFISYNINQTKDGVFCGPLIDDVVLRASHGFKL 801 (818)
Q Consensus 765 ~~~~~f~~~~~~~~~~~~~~gp~~d~v~~~~~~~~~~ 801 (818)
+|+|+||||+..+|+. |||+||||+||+++.|.+
T Consensus 158 ~t~l~F~~~~~~~D~~---CGPviD~VaIk~l~~P~p 191 (373)
T PLN03089 158 VVNLVFHNPGVEEDPA---CGPLIDAVAIKTLFPPRP 191 (373)
T ss_pred cEEEEEECcccCCCCc---ccceeeeEEEeeccCCCc
Confidence 9999999999987765 999999999999887765
No 9
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=100.00 E-value=8.9e-39 Score=304.04 Aligned_cols=151 Identities=36% Similarity=0.523 Sum_probs=132.7
Q ss_pred CcccCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEEeceeeeecCCcee------ccCCCeeEEecCCccceeeee
Q 003457 630 NLLLNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSVIGTVKYIDSKHFY------VPKGNAAIEIVSVSAGIQTAT 703 (818)
Q Consensus 630 ~l~~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~v~~i~~~~~~------~~~g~~~~~l~~~~~~~q~~~ 703 (818)
|||+||+||++|... +...+. +.++.++||||++.|.||||+++|+. ||+|.|||||+++++|.|+|.
T Consensus 1 nLl~NG~FE~~p~~~-~~~~~~-----~~~~~s~ipGWtv~g~Ve~i~~~~~~g~~~~~~p~G~~aveLg~~~~I~Q~~~ 74 (159)
T PF04862_consen 1 NLLVNGSFEEGPYNS-NMNGTS-----LSDGSSSIPGWTVSGSVEYIDSGHFQGGMYFAVPEGKQAVELGNEGSISQTFT 74 (159)
T ss_pred CCccCCCCCCCCccC-CCCcce-----EccCCCcCCCcEEcCEEEEEecCCccCceeeeCCCCceEEEcCCCceEEEEEE
Confidence 899999999999853 222222 33456999999999999999999976 999999999988899999999
Q ss_pred ccccCCCeEEEEEecCcccCccccceEEEEeeCCc-ceeeEEEeccc-CCceeeeEEEEeccceeeEEEEeCcccccCCC
Q 003457 704 TMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSL-VQNFTVQSLGT-GSVIKHSVTFKAGSGSTPISFISYNINQTKDG 781 (818)
Q Consensus 704 ~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~f~a~~~~~~~~f~~~~~~~~~~~ 781 (818)
|++|++|+|||++ +++|++.+.++|+|+++ +.++++++.++ ++|++|+|.|+|.+++++|.|++++.++|+.
T Consensus 75 --t~~G~~Y~LtF~~---~~~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F~A~~t~~~l~f~~~~~~~d~~- 148 (159)
T PF04862_consen 75 --TVPGSTYTLTFSL---ARNCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTFTASSTRITLTFHNPGMESDSA- 148 (159)
T ss_pred --ccCCCEEEEEEEe---cCCCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEEEeCCCEEEEEEECCCccCCCC-
Confidence 9999999999995 49999999999999986 88999999985 4599999999998889999999998886665
Q ss_pred Cccccccceeeee
Q 003457 782 VFCGPLIDDVVLR 794 (818)
Q Consensus 782 ~~~gp~~d~v~~~ 794 (818)
|||+||||+||
T Consensus 149 --cGp~iDnV~vk 159 (159)
T PF04862_consen 149 --CGPVIDNVSVK 159 (159)
T ss_pred --ceeEEEEEEeC
Confidence 99999999997
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=3.1e-24 Score=265.22 Aligned_cols=404 Identities=14% Similarity=0.071 Sum_probs=197.1
Q ss_pred HHHHHHHHHhhhhcCCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 48 FAASRLLAFCALSSSGDLSYATRLFNSIQ---SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKA 124 (818)
Q Consensus 48 ~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~---~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~ 124 (818)
.++..+...| .+.|++++|.+.|+++. ..+...+..+...+...|++++|.+.|+++.+.... +..++..+...
T Consensus 466 ~~~~~l~~~~--~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 542 (899)
T TIGR02917 466 SLHNLLGAIY--LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGL 542 (899)
T ss_pred HHHHHHHHHH--HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH
Confidence 3344444333 44444444444444432 122333444444444444444444444444443211 33344444444
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHHHHHHHHHHHHHcCChHHHH
Q 003457 125 CSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRN---RTLNVWTTMISGYAQSFRANEAL 201 (818)
Q Consensus 125 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~---~d~~~~~~Li~~~~~~g~~~~A~ 201 (818)
+.+.|+.++|...++++.+.+. .+...+..++..|.+.|++++|.++++++.+ .+...|..+...+.+.|++++|+
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444444444444444444321 1333444444444445555555555444432 13334455555555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--
Q 003457 202 MLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE-- 279 (818)
Q Consensus 202 ~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-- 279 (818)
..|+++.+.. +.+...+..+..++.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.++++.+.+
T Consensus 622 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 699 (899)
T TIGR02917 622 SSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699 (899)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555554432 2233444444444555555555555555554432 23344444455555555555555555554443
Q ss_pred -CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 003457 280 -RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGC 358 (818)
Q Consensus 280 -~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 358 (818)
.+...+..+...+.+.|++++|++.|+++.+.. |+..++..++.++.+.|++++|.+.++++.+. .+.+...+..
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~ 775 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTA 775 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 233344445555555555555555555555442 22234444555555555555555555555543 3344555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchH
Q 003457 359 MVDLLGRCGKVLEAEELIKRMV-W-KPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMK 436 (818)
Q Consensus 359 Li~~~~~~g~~~~A~~~~~~m~-~-~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~ 436 (818)
+...|.+.|++++|.+.|+++. . .++...+..++..+.+.|+ ++|+..+++++++.|+++..+..++.++.+.|+++
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 5555555555555555555551 1 2234555555555555555 55555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeeecCC
Q 003457 437 MQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLLNGN 484 (818)
Q Consensus 437 eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l~~~ 484 (818)
+|.++++.+ ++++|+++..+..++..
T Consensus 855 ~A~~~~~~a----------------------~~~~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 855 RALPLLRKA----------------------VNIAPEAAAIRYHLALA 880 (899)
T ss_pred HHHHHHHHH----------------------HhhCCCChHHHHHHHHH
Confidence 555544444 37788888777666554
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=7.9e-24 Score=261.56 Aligned_cols=422 Identities=11% Similarity=0.022 Sum_probs=362.9
Q ss_pred CChhHHHHHHHHh---cCchHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC---CCCHHHHHHH
Q 003457 13 LPIPPLSLLADKC---KSMHQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQ---SPNHFMWNTL 86 (818)
Q Consensus 13 p~~~tl~~ll~~c---~~~~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~---~p~~~~yn~L 86 (818)
++..++..+...+ +....+.+.+..+++.. ..+...+..+..++ .+.|++++|.+.|+++. ..+...+..+
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARID--IQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 3444555444444 34445566666666543 23456677777777 89999999999999886 3567889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCh
Q 003457 87 IRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDL 166 (818)
Q Consensus 87 i~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~ 166 (818)
...+.+.|+.++|...|+++.+.+. .+...+..+...+.+.|++++|.++++.+.+.. +.+...+..+..+|.+.|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999988643 366788889999999999999999999998764 44778999999999999999
Q ss_pred HHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 003457 167 NNARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVK 243 (818)
Q Consensus 167 ~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~ 243 (818)
++|.+.|+++.+. +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.
T Consensus 618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998653 56689999999999999999999999998864 5567889999999999999999999999999
Q ss_pred HcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003457 244 MRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFV 321 (818)
Q Consensus 244 ~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 321 (818)
+.. +.+...+..+...+.+.|++++|.+.|+++.+ ++...+..++..+.+.|++++|.+.++++.+.. +.+...+.
T Consensus 697 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 774 (899)
T TIGR02917 697 KQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRT 774 (899)
T ss_pred hhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 886 56777888899999999999999999999875 555778889999999999999999999999874 34678888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC
Q 003457 322 GVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHG 399 (818)
Q Consensus 322 ~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g 399 (818)
.+...|.+.|++++|.+.|+++.+. .+.+...++.+...+.+.|+ .+|++.++++ ...| +...+..+...+.+.|
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 9999999999999999999999876 56778999999999999999 8899999988 3334 5677888999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 400 NIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 400 ~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
++++|++.++++++.+|.++.++..++.+|.+.|++++|.++++.+
T Consensus 852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987766
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=8.8e-26 Score=240.89 Aligned_cols=383 Identities=13% Similarity=0.105 Sum_probs=333.7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 003457 80 HFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLH-VVNCLVR 158 (818)
Q Consensus 80 ~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~Li~ 158 (818)
..+|..+...+-..|++++|+.+|+.|.+...+ ....|..+..++...|+.+.|.+.+.+.++. .|+.. ....+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhH
Confidence 468889999999999999999999999985333 5568999999999999999999999999885 44444 3445566
Q ss_pred HHHhCCChHHHHHHHHHhhcCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003457 159 CYSVSSDLNNARQVFDEIRNRTL---NVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELG 235 (818)
Q Consensus 159 ~y~~~g~~~~A~~l~~~m~~~d~---~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A 235 (818)
.....|++++|...|.+..+.++ ++|..|...+-.+|+...|+..|++..+.. +--...|..|...|...+.++.|
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHH
Confidence 66778999999999998876543 479999999999999999999999998763 33456899999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003457 236 EKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--R-NIATWNAMISGLASHGHAEEALDLFRKLEKEQ 312 (818)
Q Consensus 236 ~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~-d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 312 (818)
...|.++.... +....++..|...|...|++|.|+..|++..+ | -...|+.|..++-..|+..+|++.|.+.+...
T Consensus 272 vs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 272 VSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99999988764 45567788888999999999999999999886 3 45799999999999999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHH
Q 003457 313 IVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD-VVMWGA 390 (818)
Q Consensus 313 ~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~ 390 (818)
.. .....+.|...|.+.|.+++|..+|.+..+. .+.-...++.|...|-++|++++|+..|+++ .++|. ...|+.
T Consensus 351 p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 351 PN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred Cc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 22 4678899999999999999999999998864 3334678899999999999999999999998 67887 789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCC
Q 003457 391 LLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQVLFAGLASAADILQNPDFESPPTNL 470 (818)
Q Consensus 391 Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel 470 (818)
+...|...|+.+.|++.+.+++.++|...+++.+|+.+|...|+..+|+.-++... ++
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL----------------------kl 485 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL----------------------KL 485 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH----------------------cc
Confidence 99999999999999999999999999999999999999999999999999777763 99
Q ss_pred CCCCCcceeeecCC-CCCCCcee
Q 003457 471 TPNRSTPFVLLNGN-NTIPGWTF 492 (818)
Q Consensus 471 ~P~~~~~~v~l~~~-~~~~~w~~ 492 (818)
+||.+.+|..+..+ .-+..|.+
T Consensus 486 kPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 486 KPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred CCCCchhhhHHHHHHHHHhcccc
Confidence 99999999998876 77888876
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2.7e-21 Score=206.87 Aligned_cols=381 Identities=15% Similarity=0.104 Sum_probs=327.9
Q ss_pred CChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH-H
Q 003457 45 QDHFAASRLLAFCALSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFT-F 120 (818)
Q Consensus 45 ~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~-~ 120 (818)
.-..+|.-+.+++ -..|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+..+ +.|+..... .
T Consensus 114 q~ae~ysn~aN~~--kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~ 189 (966)
T KOG4626|consen 114 QGAEAYSNLANIL--KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSD 189 (966)
T ss_pred hHHHHHHHHHHHH--HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcc
Confidence 3467788888888 889999999999998874 4577999999999999999999999999887 566666443 3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCH---HHHHHHHHHHHHcCCh
Q 003457 121 VLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTL---NVWTTMISGYAQSFRA 197 (818)
Q Consensus 121 ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~---~~~~~Li~~~~~~g~~ 197 (818)
+...+...|++++|..-+.+.++.... -...|..|...+...|++..|++.|++..+-|+ .+|..|...|-..+.+
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 444555679999999999998886432 345788899999999999999999999987554 4899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhC
Q 003457 198 NEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSM 277 (818)
Q Consensus 198 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m 277 (818)
++|+..|.+..... +-....+..+...|..+|.++.|+..|++.++.. +.-+..|+.|..++-..|++.+|.+.|++.
T Consensus 269 d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred hHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999999988763 3345677888888999999999999999999875 444688999999999999999999999988
Q ss_pred CC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC-
Q 003457 278 PE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPN-DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK- 352 (818)
Q Consensus 278 ~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~- 352 (818)
.. ....+.+.|...|.+.|.+++|..+|+...+- .|. ...++.|...|-++|++++|+..|++.++ +.|+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~f 421 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTF 421 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchH
Confidence 75 45678999999999999999999999998875 444 56788999999999999999999999885 6777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD-VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
...|+.+...|-..|+.+.|++.+.++ ...|. ...++.|...|...|++.+|++.|+++++++||.+++|.++..++.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH
Confidence 678999999999999999999999998 46675 7889999999999999999999999999999999999999988876
Q ss_pred HhhchHH
Q 003457 431 EAESMKM 437 (818)
Q Consensus 431 ~~G~~~e 437 (818)
--.+|.+
T Consensus 502 ~vcdw~D 508 (966)
T KOG4626|consen 502 IVCDWTD 508 (966)
T ss_pred HHhcccc
Confidence 5555444
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=8.2e-19 Score=220.65 Aligned_cols=412 Identities=13% Similarity=0.065 Sum_probs=278.4
Q ss_pred HHHhcCchHHHHHHHHHHHhCCCCChHHHH-HHHHHhhhhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChh
Q 003457 22 ADKCKSMHQLKQIHAQMIISSRIQDHFAAS-RLLAFCALSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPD 97 (818)
Q Consensus 22 l~~c~~~~~~~~~~~~~~~~g~~~d~~~~~-~Ll~~~a~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~ 97 (818)
+..-+..+++.+.+..+++... ++..... .+..+. ...|+.++|++.|+++.+ .+...+..+...+...|+++
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~--~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVA--KLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHh--hCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 3334556666677777665432 2222111 111222 346899999999998873 35667778888888899999
Q ss_pred HHHHHHHHHHHcCC------------------C--------------CCHHHH---------------------HHHHHH
Q 003457 98 KAIFLYMNMRRTGF------------------A--------------PNQHTF---------------------TFVLKA 124 (818)
Q Consensus 98 ~Al~lf~~m~~~g~------------------~--------------pd~~ty---------------------~~ll~~ 124 (818)
+|++.|+++.+... . |+...+ ......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999988754311 0 111000 011234
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCH-----HHHH------------HH
Q 003457 125 CSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTL-----NVWT------------TM 187 (818)
Q Consensus 125 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~-----~~~~------------~L 187 (818)
+...|++++|...++++++..+. +...+..|..+|.+.|++++|+..|++..+.++ ..|. .+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 56678889999999988886533 677888888889999999999999988765321 1121 22
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH
Q 003457 188 ISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGAL 267 (818)
Q Consensus 188 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~ 267 (818)
...+.+.|++++|++.|+++++.. +.+...+..+..++...|++++|++.|+++++.. +.+...+..+...|. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence 445678889999999999988764 4456677778888888999999999999988764 344555555666654 3456
Q ss_pred HHHHHHHhhCCCCC------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003457 268 AKAKALFDSMPERN------------IATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDV 335 (818)
Q Consensus 268 ~~A~~~f~~m~~~d------------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 335 (818)
++|..+++.+.... ...+..+...+...|++++|++.|++.++..+. +...+..+...|.+.|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 77776666554311 123444556666777777777777777765322 34555666677777777777
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHH--------------------------------------------HHHHHHcCCHHH
Q 003457 336 GRQIFGSMKRVYGIEPKIEHYGCM--------------------------------------------VDLLGRCGKVLE 371 (818)
Q Consensus 336 A~~~~~~m~~~~g~~p~~~~~~~L--------------------------------------------i~~~~~~g~~~~ 371 (818)
|...++++.+. .+.+...+..+ ...+...|+.++
T Consensus 514 A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 514 ADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 77777776653 22233333322 334445555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 372 AEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 372 A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
|+++++.- ..+...+..+...+.+.|++++|++.|+++++..|+++.++..++.+|...|++++|++.++..
T Consensus 592 A~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 592 AEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 65555532 2345566778888999999999999999999999999999999999999999999999977655
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=9e-18 Score=211.27 Aligned_cols=376 Identities=12% Similarity=0.033 Sum_probs=264.6
Q ss_pred hcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHH------------HHHHH
Q 003457 60 SSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPN-QHTF------------TFVLK 123 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd-~~ty------------~~ll~ 123 (818)
.+.|++++|+..|++..+ .+...+..|...|.+.|++++|+..|++..+...... ...+ .....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 677888888888877652 3667777788888888888888888888776433211 1111 12234
Q ss_pred HHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHHHHHH--------------
Q 003457 124 ACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR---TLNVWTT-------------- 186 (818)
Q Consensus 124 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~---d~~~~~~-------------- 186 (818)
.+.+.|++++|...++++++..+. +...+..+..+|...|++++|++.|+++.+. +...+..
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHH
Confidence 566778888888888888776432 5566667777888888888888888777642 2223332
Q ss_pred ----------------------------HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003457 187 ----------------------------MISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKV 238 (818)
Q Consensus 187 ----------------------------Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i 238 (818)
+...+...|++++|++.|++.++.. +-+...+..+...|.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3334455677777777777777653 33455566677777777777777777
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC----Ch---------hhHHHHHHHHHHcCCHHHHHHHH
Q 003457 239 HVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPER----NI---------ATWNAMISGLASHGHAEEALDLF 305 (818)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~----d~---------~~~~~Li~~~~~~g~~~~A~~l~ 305 (818)
++++++.. +.+...+..+...+.+.++.++|...++.+... +. ..+..+...+...|+.++|++++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 77777653 334444555555666777777777777776531 11 11223455677788888888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-
Q 003457 306 RKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP- 383 (818)
Q Consensus 306 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p- 383 (818)
+. .+.+...+..+...+.+.|++++|+..|+++.+. .+.+...+..++..|...|++++|++.++++. ..|
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 62 2335556677888899999999999999998875 45568888899999999999999999999873 344
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 384 DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNH------GVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 384 d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~------~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+...+..+..++...|++++|.++++++++..|+++ ..+..++.++.+.|++++|++.++..
T Consensus 670 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 670 SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456677788888899999999999999998776544 35667788999999999999977665
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=2.3e-18 Score=203.50 Aligned_cols=380 Identities=11% Similarity=-0.004 Sum_probs=263.6
Q ss_pred hcCCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 003457 60 SSSGDLSYATRLFNSIQ--SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQI 137 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~--~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~ 137 (818)
.+.|++++|++.|++.. .|+...|..+..+|.+.|++++|++.+++..+.... +...+..+..++...|++++|...
T Consensus 138 ~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 138 YRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred HHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666666654 355556666666666666666666666666653221 344566666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----------------------------CH---HHHH
Q 003457 138 HTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR-----------------------------TL---NVWT 185 (818)
Q Consensus 138 ~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~-----------------------------d~---~~~~ 185 (818)
+..+...+...+... ..++.-+......+.+...++.-... +. ..+.
T Consensus 217 ~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (615)
T TIGR00990 217 LTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQL 295 (615)
T ss_pred HHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchH
Confidence 655444321111111 11111111111111111111111000 00 0000
Q ss_pred HHHHHH---HHcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 003457 186 TMISGY---AQSFRANEALMLFDQMLMEG-FEP-NSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHM 260 (818)
Q Consensus 186 ~Li~~~---~~~g~~~~A~~l~~~m~~~g-~~p-d~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~ 260 (818)
.+...+ ...+++++|++.|++.++.+ ..| +...+..+...+...|++++|...+++.++.. +.....+..+..+
T Consensus 296 ~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~ 374 (615)
T TIGR00990 296 QLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 111000 12367899999999998764 223 44567777788889999999999999999874 4456688889999
Q ss_pred HHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003457 261 YTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGR 337 (818)
Q Consensus 261 ~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~ 337 (818)
+...|++++|...|+++.+ .+...|..+...+...|++++|+..|++.++..+. +...+..+..++.+.|++++|+
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999998765 46788999999999999999999999999987432 5667778889999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH-H-------HHHHHHHHHHHcCCHHHHHHHH
Q 003457 338 QIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDV-V-------MWGALLAACKNHGNIEVAERVV 408 (818)
Q Consensus 338 ~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~-~-------~~~~Li~a~~~~g~~~~A~~~~ 408 (818)
..|++..+. .+.+...++.+..+|...|++++|++.|+++ ...|+. . .++..+..+...|++++|++++
T Consensus 454 ~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~ 531 (615)
T TIGR00990 454 ATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC 531 (615)
T ss_pred HHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999998875 5556889999999999999999999999997 333321 1 1222222334579999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 409 KEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 409 ~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+++++++|++..++..++.++.+.|++++|++.++..
T Consensus 532 ~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999977665
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=2e-17 Score=199.19 Aligned_cols=388 Identities=10% Similarity=0.005 Sum_probs=293.4
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003457 51 SRLLAFCALSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSN 127 (818)
Q Consensus 51 ~~Ll~~~a~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~ 127 (818)
.-.+.+. ...|+.++|++++.+... .+...+..+...+...|++++|+++|++..+... .+...+..+...+..
T Consensus 19 ~d~~~ia--~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIA--LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHH--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3334445 678999999999998763 4555689999999999999999999999887522 245667788888899
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHH
Q 003457 128 VRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLF 204 (818)
Q Consensus 128 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~ 204 (818)
.|++++|...++++++..+. +.. +..+..++...|+.++|+..++++.+. +...+..+...+...+..++|++.+
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 99999999999999987433 555 888889999999999999999998763 5556777888888899999999988
Q ss_pred HHHHHcCCCCCH------HHHHHHHHHHHh-----cCCh---hHHHHHHHHHHHc-CCCCcHH-H-H---HHHHHHHHhC
Q 003457 205 DQMLMEGFEPNS------VTLASVLSACAQ-----SGCL---ELGEKVHVFVKMR-GFEMGAI-L-G---TALVHMYTKN 264 (818)
Q Consensus 205 ~~m~~~g~~pd~------~t~~~ll~~~~~-----~g~~---~~A~~i~~~~~~~-g~~~~~~-~-~---~~Li~~~~~~ 264 (818)
+++.. .|+. .....++..... .+++ ++|.+.++.+.+. ...|+.. . . ...+.++...
T Consensus 174 ~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 174 DDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 87653 2321 111222222221 1233 6788888888864 1122221 1 1 1113345677
Q ss_pred CCHHHHHHHHhhCCCCC---hh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHH
Q 003457 265 GALAKAKALFDSMPERN---IA-TWNAMISGLASHGHAEEALDLFRKLEKEQIVP---NDITFVGVLSACCHAGFIDVGR 337 (818)
Q Consensus 265 g~~~~A~~~f~~m~~~d---~~-~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~A~ 337 (818)
|++++|++.|+++.+.+ +. ....+...|...|++++|+..|+++.+..... .......+..++.+.+++++|.
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999999998632 21 22335778999999999999999988753221 1244566677889999999999
Q ss_pred HHHHHHHHHhC----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHH
Q 003457 338 QIFGSMKRVYG----------IEPK---IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIE 402 (818)
Q Consensus 338 ~~~~~m~~~~g----------~~p~---~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~ 402 (818)
+.++.+.+... -.|+ ...+..+...+...|++++|++.++++ ...| +...+..++..+...|+++
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 99999886410 0122 235667888899999999999999998 3345 5788899999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 403 VAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 403 ~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
+|++.++++++++|++...+..++..+.+.|++++|+++++.++
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887774
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.84 E-value=4e-17 Score=192.71 Aligned_cols=353 Identities=11% Similarity=-0.034 Sum_probs=275.2
Q ss_pred hcCCCHHHHHHHHhhcCC------CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHH
Q 003457 60 SSSGDLSYATRLFNSIQS------PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNC 133 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~~------p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~ 133 (818)
.++.+++.---+|+..++ .+......++..+.+.|++++|+.+++........ +...+..++.++...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 466667666666666553 12233445677788899999999999998886444 44455566667778999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003457 134 CKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRN--R-TLNVWTTMISGYAQSFRANEALMLFDQMLME 210 (818)
Q Consensus 134 A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~--~-d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 210 (818)
|.+.++++++..+. +...+..+...+.+.|++++|.+.|++..+ + +...+..+...+...|++++|...++++...
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999999887543 667788888999999999999999998875 2 5568888999999999999999999988766
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHH
Q 003457 211 GFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNA 287 (818)
Q Consensus 211 g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~ 287 (818)
. +.+...+..+ ..+...|++++|...++.+++....++......+..++.+.|++++|...|+++.+ .+...+..
T Consensus 174 ~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 V-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred C-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4 2333333333 34778899999999999988765334444555667788899999999999998775 45678888
Q ss_pred HHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003457 288 MISGLASHGHAEE----ALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLL 363 (818)
Q Consensus 288 Li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~ 363 (818)
+...|.+.|++++ |+..|+++.+..+. +...+..+...+.+.|++++|...++++.+. .+.+...+..+..+|
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 8999999999886 89999999886432 5678888899999999999999999998875 344567788889999
Q ss_pred HHcCCHHHHHHHHHHcC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003457 364 GRCGKVLEAEELIKRMV-WKPDVV-MWGALLAACKNHGNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 364 ~~~g~~~~A~~~~~~m~-~~pd~~-~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~ 419 (818)
.+.|++++|++.|+++. ..|+.. .+..+..++...|+.++|+..|+++++..|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999999883 456643 344456778899999999999999999999854
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=5.6e-17 Score=191.50 Aligned_cols=349 Identities=11% Similarity=-0.006 Sum_probs=278.2
Q ss_pred HhCCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH
Q 003457 91 ASSLNPDKAIFLYMNMRRT--GFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNN 168 (818)
Q Consensus 91 ~~~g~~~~Al~lf~~m~~~--g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~ 168 (818)
.+..+++.-.-+|....+. .-.-+......++..+.+.|++++|..+++..+...+. +......++.++...|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3445555444444433221 01112334556677888999999999999999988655 44555566677778999999
Q ss_pred HHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003457 169 ARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 169 A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~ 245 (818)
|...|+++.+. +...|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 99999999763 55688999999999999999999999999863 445677888889999999999999999988876
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003457 246 GFEMGAILGTALVHMYTKNGALAKAKALFDSMPER----NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFV 321 (818)
Q Consensus 246 g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~----d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 321 (818)
.. .+...+..+ ..+.+.|++++|...++.+.+. +...+..+...+.+.|++++|+..++++.+..+. +...+.
T Consensus 174 ~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~ 250 (656)
T PRK15174 174 VP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRR 250 (656)
T ss_pred CC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 53 333344333 3478899999999999987653 2334455677889999999999999999987533 567778
Q ss_pred HHHHHHHHcCCHHH----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHH
Q 003457 322 GVLSACCHAGFIDV----GRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD-VVMWGALLAAC 395 (818)
Q Consensus 322 ~ll~a~~~~g~~~~----A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a~ 395 (818)
.+...+...|++++ |...|+++.+. .+.+...+..+...+.+.|++++|+..++++ ...|+ ...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88999999999986 89999998875 4556889999999999999999999999998 34554 66788888999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
.+.|++++|++.|+++++.+|++...+..++.++.+.|++++|++.++...
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999988777778999999999999999777653
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=1.8e-17 Score=185.26 Aligned_cols=281 Identities=14% Similarity=0.112 Sum_probs=150.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC-------HHHHHHHHHHHHHcCChHHH
Q 003457 128 VRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRT-------LNVWTTMISGYAQSFRANEA 200 (818)
Q Consensus 128 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d-------~~~~~~Li~~~~~~g~~~~A 200 (818)
.|++++|...+.++++.++ .+..++..+...|.+.|++++|..+++.+.... ...+..++..|.+.|++++|
T Consensus 48 ~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred cCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3344444444444443321 122333444444444444444444444433210 12344445555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc----HHHHHHHHHHHHhCCCHHHHHHHHhh
Q 003457 201 LMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMG----AILGTALVHMYTKNGALAKAKALFDS 276 (818)
Q Consensus 201 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~----~~~~~~Li~~~~~~g~~~~A~~~f~~ 276 (818)
+.+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|.+.|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555554432 33444555555555555555555555555554432111 11233445555566666666666665
Q ss_pred CCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCH
Q 003457 277 MPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKI 353 (818)
Q Consensus 277 m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~ 353 (818)
+.+ .+...+..++..|.+.|++++|+++|+++.+.+......++..++.+|.+.|++++|.+.++++.+. .|+.
T Consensus 206 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~ 282 (389)
T PRK11788 206 ALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGA 282 (389)
T ss_pred HHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCc
Confidence 543 2334556666677777777777777777766533222345566667777777777777777776653 4555
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHh
Q 003457 354 EHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDVVMWGALLAACKN---HGNIEVAERVVKEIIA 413 (818)
Q Consensus 354 ~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~Li~a~~~---~g~~~~A~~~~~~~~~ 413 (818)
..+..++..+.+.|++++|.++|+++ ...|+...++.++..+.. .|+.++++.+++++++
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 55566677777777777777777665 345666666666665443 4466677766666654
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=3.2e-16 Score=185.30 Aligned_cols=378 Identities=10% Similarity=0.005 Sum_probs=277.3
Q ss_pred chHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHH
Q 003457 28 MHQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYM 104 (818)
Q Consensus 28 ~~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~ 104 (818)
...+...+...++ ..|+...|..+...| .+.|++++|++.++...+ .+...|..+..+|...|++++|+.-|.
T Consensus 143 ~~~Ai~~y~~al~--~~p~~~~~~n~a~~~--~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~ 218 (615)
T TIGR00990 143 FNKAIKLYSKAIE--CKPDPVYYSNRAACH--NALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLT 218 (615)
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHH--HHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344555666554 557777777777767 899999999999998763 456789999999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CCHH---------------------------HHHH
Q 003457 105 NMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLD--LDLH---------------------------VVNC 155 (818)
Q Consensus 105 ~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~---------------------------~~~~ 155 (818)
.....+...+.. ...++..+.. ..+.......++.... |... ....
T Consensus 219 ~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (615)
T TIGR00990 219 ASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293 (615)
T ss_pred HHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccc
Confidence 776543221222 2222222111 1111111122111110 0000 0000
Q ss_pred HHHHH------HhCCChHHHHHHHHHhhcC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003457 156 LVRCY------SVSSDLNNARQVFDEIRNR------TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVL 223 (818)
Q Consensus 156 Li~~y------~~~g~~~~A~~l~~~m~~~------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 223 (818)
++..+ ...+++++|.+.|++..+. ....|+.+...+...|++++|+..|++.++.. +-+...|..+.
T Consensus 294 ~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la 372 (615)
T TIGR00990 294 QLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRA 372 (615)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHH
Confidence 11111 1236789999999988753 33478888999999999999999999998863 33466888888
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHH
Q 003457 224 SACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEE 300 (818)
Q Consensus 224 ~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~ 300 (818)
..+...|++++|...++++++.. +.+..++..+..+|...|++++|...|++..+ .+...+..+...+.+.|++++
T Consensus 373 ~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 373 SMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999875 55678899999999999999999999998875 356678889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC-H-------HHHHHHHHHHHHcCCHHHH
Q 003457 301 ALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK-I-------EHYGCMVDLLGRCGKVLEA 372 (818)
Q Consensus 301 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~-~-------~~~~~Li~~~~~~g~~~~A 372 (818)
|+..|++.++.. +-+...++.+..++...|++++|+..|++..+. .|+ . ..++.....+...|++++|
T Consensus 452 A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 452 SMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 999999998763 235678888999999999999999999998864 332 1 1122223334457999999
Q ss_pred HHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 373 EELIKRM-VWKPD-VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 373 ~~~~~~m-~~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
+++++++ ...|+ ...+..++..+.+.|++++|++.|+++.++.+...+
T Consensus 528 ~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 528 ENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 9999987 44554 567889999999999999999999999999876444
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=2.1e-17 Score=184.82 Aligned_cols=281 Identities=14% Similarity=0.130 Sum_probs=135.3
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCChHH
Q 003457 92 SSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLD---LHVVNCLVRCYSVSSDLNN 168 (818)
Q Consensus 92 ~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~Li~~y~~~g~~~~ 168 (818)
..|++++|+..|+++.+.+.. +..++..+...+.+.|++++|..+++.+++.+..++ ...+..++..|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 334444444444444443111 223444444444444444444444444443321111 1234444455555555555
Q ss_pred HHHHHHHhhc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHH
Q 003457 169 ARQVFDEIRN---RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNS----VTLASVLSACAQSGCLELGEKVHVF 241 (818)
Q Consensus 169 A~~l~~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~~~~~~g~~~~A~~i~~~ 241 (818)
|+++|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..+.. ..+..+...+.+.|++++|.+.+++
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555555543 13334555555555555555555555555443311111 1223344444555555555555555
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003457 242 VKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--RN--IATWNAMISGLASHGHAEEALDLFRKLEKEQIVPND 317 (818)
Q Consensus 242 ~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d--~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 317 (818)
+.+.. +.+...+..++..|.+.|++++|.+.|+++.+ ++ ...++.++.+|.+.|++++|...++++.+. .|+.
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~ 282 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGA 282 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence 55443 22334444555555555555555555555543 11 223455555666666666666666665554 2333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHc
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR---CGKVLEAEELIKRM 379 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~---~g~~~~A~~~~~~m 379 (818)
..+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++
T Consensus 283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 283 DLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 44455555666666666666666655543 4555555555554443 33555666555555
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.2e-15 Score=184.00 Aligned_cols=397 Identities=11% Similarity=-0.007 Sum_probs=300.8
Q ss_pred hHHHHHHHHhcCchHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHh
Q 003457 16 PPLSLLADKCKSMHQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQ---SPNHFMWNTLIRAQAS 92 (818)
Q Consensus 16 ~tl~~ll~~c~~~~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~---~p~~~~yn~Li~~~~~ 92 (818)
.-|..+..-.+....+.+++...... -..+...+..+...+ .+.|++++|.++|++.. ..+...+..+...+..
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~--~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAY--RNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34555555556666667777666652 233455677777777 89999999999999964 3457778889999999
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 003457 93 SLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQV 172 (818)
Q Consensus 93 ~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l 172 (818)
.|++++|+..++++.+.... +.. +..+..++...|+.++|...++++++..+. +...+..+..++.+.++.++|.+.
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence 99999999999999886332 555 888888999999999999999999997644 666667788888899999999999
Q ss_pred HHHhhcCCHH--------HHHHHHHHHH-----HcCCh---HHHHHHHHHHHHc-CCCCCHH-HHH----HHHHHHHhcC
Q 003457 173 FDEIRNRTLN--------VWTTMISGYA-----QSFRA---NEALMLFDQMLME-GFEPNSV-TLA----SVLSACAQSG 230 (818)
Q Consensus 173 ~~~m~~~d~~--------~~~~Li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~pd~~-t~~----~ll~~~~~~g 230 (818)
+++... ++. ....+++... ..+++ ++|++.++.+.+. ...|+.. .+. ..+..+...+
T Consensus 173 l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g 251 (765)
T PRK10049 173 IDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARD 251 (765)
T ss_pred HHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhh
Confidence 998776 211 2222333322 22234 7889999999864 1223221 111 1134456779
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHHcCCHHHHHH
Q 003457 231 CLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERN-------IATWNAMISGLASHGHAEEALD 303 (818)
Q Consensus 231 ~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d-------~~~~~~Li~~~~~~g~~~~A~~ 303 (818)
++++|+..|+.+.+.+.+........+..+|...|++++|+..|+++.+.+ ...+..|..++.+.|++++|..
T Consensus 252 ~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~ 331 (765)
T PRK10049 252 RYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALT 331 (765)
T ss_pred hHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 999999999999987632122233336789999999999999999886522 2345666778899999999999
Q ss_pred HHHHHHHcCC-----------CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH
Q 003457 304 LFRKLEKEQI-----------VPND---ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKV 369 (818)
Q Consensus 304 l~~~m~~~g~-----------~pd~---~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~ 369 (818)
+++++.+..+ .|+. ..+..+...+...|++++|++.++++... .+.+...+..++..+...|++
T Consensus 332 ~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 332 VTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCH
Confidence 9999987532 1332 24456778889999999999999999875 667788999999999999999
Q ss_pred HHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 003457 370 LEAEELIKRM-VWKPD-VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGV 421 (818)
Q Consensus 370 ~~A~~~~~~m-~~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~ 421 (818)
++|++.++++ ...|+ ...+..++..+...|++++|+.+++++++..|+++.+
T Consensus 410 ~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 410 RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999998 45575 6677777778899999999999999999999998743
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=7.2e-16 Score=186.19 Aligned_cols=176 Identities=7% Similarity=-0.091 Sum_probs=107.1
Q ss_pred cCchHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHhCCChhHHHHHH
Q 003457 26 KSMHQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQS--PNHFMWNTLIRAQASSLNPDKAIFLY 103 (818)
Q Consensus 26 ~~~~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~--p~~~~yn~Li~~~~~~g~~~~Al~lf 103 (818)
++...+...+..+++..... ..++..|...| .+.|+.++|+..+++..+ |+-..|..++..+ +++++|..+|
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~y--l~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDN-IPLTLYLAEAY--RHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH--HHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 33444455555555543333 67777777777 888888888888888763 3333333333222 6677777777
Q ss_pred HHHHHcCC--------------------------------------CCCHHHHHHH-HHHHHccCChHHHHHHHHHHHHc
Q 003457 104 MNMRRTGF--------------------------------------APNQHTFTFV-LKACSNVRSLNCCKQIHTHVSKS 144 (818)
Q Consensus 104 ~~m~~~g~--------------------------------------~pd~~ty~~l-l~~~~~~g~~~~A~~~~~~m~~~ 144 (818)
+++.+... .|+....... .+.|.+.+++++|.+++.++++.
T Consensus 132 e~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~ 211 (987)
T PRK09782 132 EELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQ 211 (987)
T ss_pred HHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhc
Confidence 77665322 1222222222 55566667777777777777776
Q ss_pred CCCCCHHHHHHHHHHHHh-CCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003457 145 GLDLDLHVVNCLVRCYSV-SSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLM 209 (818)
Q Consensus 145 g~~p~~~~~~~Li~~y~~-~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 209 (818)
++. +......|..+|.. .++ +++..+++...+.+...+..+...|.+.|+.++|.++++++..
T Consensus 212 ~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 212 NTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred CCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 533 34445555556665 345 6666665554445666777888888888888888888877643
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.81 E-value=3.3e-15 Score=180.44 Aligned_cols=210 Identities=11% Similarity=0.051 Sum_probs=120.5
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 230 GCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--RNIATWNAMISGLASHGHAEEALDLFRK 307 (818)
Q Consensus 230 g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~Li~~~~~~g~~~~A~~l~~~ 307 (818)
++.++|...+.+..... |+......+...+.+.|++++|...|+++.. ++...+..+...+.+.|++++|..++++
T Consensus 490 ~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~q 567 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQ 567 (987)
T ss_pred CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444555444444332 2322222333344566666666666665543 2333455555566666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CH
Q 003457 308 LEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DV 385 (818)
Q Consensus 308 m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~ 385 (818)
.++..+. +...+..+...+...|++++|...+++..+. .|+...+..+..++.+.|++++|++.|+++ ...| +.
T Consensus 568 AL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~ 643 (987)
T PRK09782 568 AEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS 643 (987)
T ss_pred HHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 6654311 2222222333334446677777666666643 455666666666677777777777777666 2334 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
..+..+..++...|++++|++.+++++++.|+++.++..++.++.+.|++++|++.++..
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 556666666666777777777777777777777777777777777777777777655554
No 26
>PF04862 DUF642: Protein of unknown function (DUF642); InterPro: IPR006946 This family contains a conserved region found in a number of uncharacterised plant proteins.
Probab=99.79 E-value=1.8e-19 Score=171.78 Aligned_cols=152 Identities=33% Similarity=0.623 Sum_probs=131.5
Q ss_pred cccCCCCCCCCCCCCCCCCcceeeecCCCCCCCceeeceEEEEecCCe-----eecCCCCccccccccccchhhhhcccC
Q 003457 457 ILQNPDFESPPTNLTPNRSTPFVLLNGNNTIPGWTFEGTVQYVTASQT-----IRLPDNGHAIQLAQDGRINQTFAADGD 531 (818)
Q Consensus 457 ~~~~~~~~~~~lel~P~~~~~~v~l~~~~~~~~w~~~~~v~~~~~~~~-----~~~p~~~~~~~~~~~~~i~~~~~~~~~ 531 (818)
+..||.||..+....++... +..+-..+|||...|.|+++.++.. +..|.|+|+++|+.++.|.|.+. ...
T Consensus 2 Ll~NG~FE~~p~~~~~~~~~---~~~~~s~ipGWtv~g~Ve~i~~~~~~g~~~~~~p~G~~aveLg~~~~I~Q~~~-t~~ 77 (159)
T PF04862_consen 2 LLVNGSFEEGPYNSNMNGTS---LSDGSSSIPGWTVSGSVEYIDSGHFQGGMYFAVPEGKQAVELGNEGSISQTFT-TVP 77 (159)
T ss_pred CccCCCCCCCCccCCCCcce---EccCCCcCCCcEEcCEEEEEecCCccCceeeeCCCCceEEEcCCCceEEEEEE-ccC
Confidence 56899998888665555443 3336689999999888999998886 25899999999999999999996 889
Q ss_pred CceeeeeeeccCCCcccccccceeeecCCC-CceeeceeeccCCccchhhhccccccCCCceEEEEecCCCCCCCCCcch
Q 003457 532 DLIYILTLTLAPGGQNCSANANLVVSAPDS-HGVYSLKQHYGKETWKSYGHYLGRWGQDEPINLVIRSQSTESDDNSTCW 610 (818)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (818)
+..|.++|+++ |+|++.+.++|+|.++ ..++++++.|+..||++|.|.| .|....++|+|||||++ +|++||
T Consensus 78 G~~Y~LtF~~~---~~~~~~~~l~V~v~~~~~~~~~~~~~~~~~~w~~~s~~F--~A~~t~~~l~f~~~~~~--~d~~cG 150 (159)
T PF04862_consen 78 GSTYTLTFSLA---RNCAQSESLSVSVGGQFSFVVTIQTSYGSGGWDTYSFTF--TASSTRITLTFHNPGME--SDSACG 150 (159)
T ss_pred CCEEEEEEEec---CCCCCCccEEEEEecccceEEEeeccCCCCCcEEEEEEE--EeCCCEEEEEEECCCcc--CCCCce
Confidence 99999999988 9999999999999997 7899999999999999999888 55669999999998888 444999
Q ss_pred hHHHHhhhc
Q 003457 611 PVIDMLLLK 619 (818)
Q Consensus 611 ~~~~~~~~~ 619 (818)
|+||.+.+|
T Consensus 151 p~iDnV~vk 159 (159)
T PF04862_consen 151 PVIDNVSVK 159 (159)
T ss_pred eEEEEEEeC
Confidence 999987664
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.1e-14 Score=172.76 Aligned_cols=388 Identities=12% Similarity=0.010 Sum_probs=232.8
Q ss_pred HHHHHhhhhcCCCHHHHHHHHhhcCCCCHHH-HHHH--HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 003457 52 RLLAFCALSSSGDLSYATRLFNSIQSPNHFM-WNTL--IRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNV 128 (818)
Q Consensus 52 ~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~-yn~L--i~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~ 128 (818)
.++.++ ...|+.++|+..+++...|+... +..+ ...|...|++++|+++|+++.+.... +...+..++..+...
T Consensus 73 dll~l~--~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIA--GWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHH--HHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhc
Confidence 444444 45566666666666555442222 2222 33455556666666666666554333 334444555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHHH
Q 003457 129 RSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLFD 205 (818)
Q Consensus 129 g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~ 205 (818)
++.++|++.++++.+. .|+...+..++..+...++..+|++.++++.+. +...+..+..+..+.|-...|+++.+
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 6666666666555553 223333333333333344444456666555542 33445555555555555555555444
Q ss_pred HHHHcCCCCCHHH------HHHHHHHHH-----hcCCh---hHHHHHHHHHHHc-CC-CCcHHH-HH---HHHHHHHhCC
Q 003457 206 QMLMEGFEPNSVT------LASVLSACA-----QSGCL---ELGEKVHVFVKMR-GF-EMGAIL-GT---ALVHMYTKNG 265 (818)
Q Consensus 206 ~m~~~g~~pd~~t------~~~ll~~~~-----~~g~~---~~A~~i~~~~~~~-g~-~~~~~~-~~---~Li~~~~~~g 265 (818)
+-... +.+...- ...+++.-. ...++ +.|..-++.+... +. ++.... .. -.+-++.+.+
T Consensus 228 ~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 228 ENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred hCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 32111 1111100 001110000 01112 2233333443332 11 221111 12 2345677888
Q ss_pred CHHHHHHHHhhCCCC----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHH
Q 003457 266 ALAKAKALFDSMPER----NIATWNAMISGLASHGHAEEALDLFRKLEKEQI-----VPNDITFVGVLSACCHAGFIDVG 336 (818)
Q Consensus 266 ~~~~A~~~f~~m~~~----d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-----~pd~~t~~~ll~a~~~~g~~~~A 336 (818)
+++++++.|+.+... -..+-..+..+|...+++++|+.+|+++..... .++......|.-++...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 999999999999852 233556778899999999999999999876431 22333356788899999999999
Q ss_pred HHHHHHHHHHhC----------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCH
Q 003457 337 RQIFGSMKRVYG----------IEPK---IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNI 401 (818)
Q Consensus 337 ~~~~~~m~~~~g----------~~p~---~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~ 401 (818)
.++++.+.+... -.|| ...+..++..+...|++.+|++.++++ ...| |......+...+...|..
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 999999886311 0122 344556777788999999999999988 3345 788888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 402 EVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 402 ~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.+|++.++.+..++|++......++..+.+.|+|++|.++.+..
T Consensus 467 ~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 467 RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998866444
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=5.3e-15 Score=175.27 Aligned_cols=407 Identities=12% Similarity=0.095 Sum_probs=298.9
Q ss_pred hcCCCHHHHHHHHhhcCC--CCH--HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHH
Q 003457 60 SSSGDLSYATRLFNSIQS--PNH--FMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCK 135 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~~--p~~--~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~ 135 (818)
.+.|+++.|+..|++..+ |+. ..+ .++..+...|+.++|+..+++.... -......+..+...+...|++++|.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 599999999999999874 442 234 8888889999999999999998821 1223344444566888899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHcCCC
Q 003457 136 QIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQ--SFRANEALMLFDQMLMEGFE 213 (818)
Q Consensus 136 ~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~--~g~~~~A~~l~~~m~~~g~~ 213 (818)
++++++++..+. +...+..++..|...++.++|++.++++...+......++.++.. .++..+|++.++++.+.. +
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P 200 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-P 200 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-C
Confidence 999999998655 567777889999999999999999999987655533334444444 566666999999999884 5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHH------HHHHHHHHH-----HhCCC---HHHHHHHHhhCCC
Q 003457 214 PNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAI------LGTALVHMY-----TKNGA---LAKAKALFDSMPE 279 (818)
Q Consensus 214 pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~------~~~~Li~~~-----~~~g~---~~~A~~~f~~m~~ 279 (818)
-+...+..+..++.+.|-...|.++..+-...- .+... ....++..- ....+ .+.|+.-++.+..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~ 279 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLT 279 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHh
Confidence 567777888889999998888887665433211 11110 001111100 01122 2344444444442
Q ss_pred -----CCh-hhHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-
Q 003457 280 -----RNI-ATWN----AMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYG- 348 (818)
Q Consensus 280 -----~d~-~~~~----~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g- 348 (818)
|.. ..|. =.+-++...+++.++++.|+.|...+.+....+-..+..+|...++.++|+.+|+.+....+
T Consensus 280 ~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~ 359 (822)
T PRK14574 280 RWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGK 359 (822)
T ss_pred hccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcccc
Confidence 211 1221 23457788999999999999999988665566788899999999999999999999876521
Q ss_pred ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC--------------CC--C-HHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 349 ---IEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVW--------------KP--D-VVMWGALLAACKNHGNIEVAERVV 408 (818)
Q Consensus 349 ---~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--------------~p--d-~~~~~~Li~a~~~~g~~~~A~~~~ 408 (818)
.+++......|.-+|...+++++|..+++++.. .| | ......++..+...|+..+|++.+
T Consensus 360 ~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~l 439 (822)
T PRK14574 360 TFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKL 439 (822)
T ss_pred ccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 233455567899999999999999999998831 12 2 234455667788999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeeecCC-CCC
Q 003457 409 KEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLLNGN-NTI 487 (818)
Q Consensus 409 ~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l~~~-~~~ 487 (818)
+++....|.|......+++++...|+..+|++.++... .++|++..+++.+... ...
T Consensus 440 e~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~----------------------~l~P~~~~~~~~~~~~al~l 497 (822)
T PRK14574 440 EDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVE----------------------SLAPRSLILERAQAETAMAL 497 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh----------------------hhCCccHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999887774 5677776666665544 455
Q ss_pred CCceee
Q 003457 488 PGWTFE 493 (818)
Q Consensus 488 ~~w~~~ 493 (818)
+.|...
T Consensus 498 ~e~~~A 503 (822)
T PRK14574 498 QEWHQM 503 (822)
T ss_pred hhHHHH
Confidence 555543
No 29
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3e-14 Score=161.51 Aligned_cols=405 Identities=14% Similarity=0.075 Sum_probs=249.9
Q ss_pred ChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCC------HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HH
Q 003457 46 DHFAASRLLAFCALSSSGDLSYATRLFNSIQSPN------HFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQ--HT 117 (818)
Q Consensus 46 d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~------~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~--~t 117 (818)
++.+.+.|.+.| --.|+++.+..+.+.+...+ ..+|..+.++|-..|++++|...|.+..+. .+|. ..
T Consensus 269 nP~~l~~LAn~f--yfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~ 344 (1018)
T KOG2002|consen 269 NPVALNHLANHF--YFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLP 344 (1018)
T ss_pred CcHHHHHHHHHH--hhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcccc
Confidence 566666666666 55666666666666555321 234556666666666666666666655543 2232 23
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC----ChHHHHHHHHHhhcC--------------
Q 003457 118 FTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSS----DLNNARQVFDEIRNR-------------- 179 (818)
Q Consensus 118 y~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g----~~~~A~~l~~~m~~~-------------- 179 (818)
+.-|...+.+.|+++.+...|+.+.+.. +.+..+...|...|+..+ ..++|..++.+..++
T Consensus 345 ~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 345 LVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred ccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3445556666666666666666666542 224445455555555443 334444444443332
Q ss_pred ---------------------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCH------HHHHHHH
Q 003457 180 ---------------------------TLNVWTTMISGYAQSFRANEALMLFDQMLME---GFEPNS------VTLASVL 223 (818)
Q Consensus 180 ---------------------------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~------~t~~~ll 223 (818)
-+...|.+...+...|++.+|...|++.... ...+|. .+-..+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 2334455555555666666666666655433 111222 1122233
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHH
Q 003457 224 SACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEE 300 (818)
Q Consensus 224 ~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~ 300 (818)
..+-..++.+.|.+.|..+.+.. +.-+..|..|+.+....+...+|...++.+.+ .++..+..+...+.+...+..
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcc
Confidence 44445556666666666666552 22223333333333333556666666666654 456666667777777777777
Q ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003457 301 ALDLFRKLEKE-QIVPNDITFVGVLSACCH------------AGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCG 367 (818)
Q Consensus 301 A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~------------~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g 367 (818)
|.+-|+...+. ...+|..+...|.+.|.. .+..++|+++|.++++. .+.|...-|.+.-.++..|
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc--Ccchhhhccchhhhhhhcc
Confidence 77766665543 223566777777776554 24577888888888764 5667888888888899999
Q ss_pred CHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHhhchHHHHH-HH
Q 003457 368 KVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALE--PNNHGVYVVLSNMYAEAESMKMQLE-IL 442 (818)
Q Consensus 368 ~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~--P~~~~~y~~L~~~l~~~G~~~eA~~-l~ 442 (818)
++.+|..+|.+.. ...+..+|.++..+|...|++-.|+++|+..++.. -++++...+|+.++.++|++.+|.+ +.
T Consensus 661 ~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred CchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999998874 22356778889999999999999999998888743 3467888999999999999999988 44
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeee
Q 003457 443 LVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLL 481 (818)
Q Consensus 443 ~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l 481 (818)
..+ .+.|.++...+.+
T Consensus 741 ~a~-----------------------~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 741 KAR-----------------------HLAPSNTSVKFNL 756 (1018)
T ss_pred HHH-----------------------HhCCccchHHhHH
Confidence 444 6778777765554
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=3.1e-14 Score=147.93 Aligned_cols=347 Identities=13% Similarity=0.075 Sum_probs=238.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC------------
Q 003457 82 MWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLD------------ 149 (818)
Q Consensus 82 ~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~------------ 149 (818)
..|.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-.+...|+.++.++.|.+|+.....+|
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3444445567889999999999887773 67777544455455567888999999999886533222
Q ss_pred HHHHHHHH-----HHHHhCC--ChHHHHHHHHHhhc----CCHH-------------HHH--------HHHHHHHHcCCh
Q 003457 150 LHVVNCLV-----RCYSVSS--DLNNARQVFDEIRN----RTLN-------------VWT--------TMISGYAQSFRA 197 (818)
Q Consensus 150 ~~~~~~Li-----~~y~~~g--~~~~A~~l~~~m~~----~d~~-------------~~~--------~Li~~~~~~g~~ 197 (818)
....+.-+ .-+-+.+ +.++++-.--++.. ++.. .|. .-...+.++|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222211 1111111 11222211112221 1111 010 122357888999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH--HHHH----------------------------------HHHhcCChhHHHHHHHH
Q 003457 198 NEALMLFDQMLMEGFEPNSVTLA--SVLS----------------------------------ACAQSGCLELGEKVHVF 241 (818)
Q Consensus 198 ~~A~~l~~~m~~~g~~pd~~t~~--~ll~----------------------------------~~~~~g~~~~A~~i~~~ 241 (818)
+.|+++++-+.+..-+.-...-+ .++. .....|++++|...|++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999888775442111111100 0111 11123567888888888
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003457 242 VKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDI 318 (818)
Q Consensus 242 ~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 318 (818)
.+...-......|| +.-.+-+.|++++|++.|-++.. .+......+...|-...+..+|++++.+.... ++.|+.
T Consensus 516 al~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ 593 (840)
T KOG2003|consen 516 ALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA 593 (840)
T ss_pred HHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence 77654322233333 44556778889999998887764 67777888888898889999999998777654 445677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHH-H
Q 003457 319 TFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDVVMWGALLAAC-K 396 (818)
Q Consensus 319 t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~Li~a~-~ 396 (818)
.+..|...|-+.|+-..|.+++-.--+- ++-|..+..-|...|....-+++|+.+|+++ ...|+..-|..++..| .
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 8888999999999999999988775543 7778899999999999999999999999998 5789999999998876 5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 397 NHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
+.|++++|.++|+...+..|.+.+++..|+++....|.
T Consensus 672 rsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 79999999999999999999999999999999988884
No 31
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.64 E-value=1e-12 Score=149.18 Aligned_cols=314 Identities=12% Similarity=0.074 Sum_probs=239.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-------CH-
Q 003457 114 NQHTFTFVLKACSNVRSLNCCKQIHTHVS----KSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR-------TL- 181 (818)
Q Consensus 114 d~~ty~~ll~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~-------d~- 181 (818)
|...|..+...+-.. +...+..++..++ ..+..+.....|.+...+...|++++|...|+..... |.
T Consensus 413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 444554444444332 3333344444433 3455577788899999999999999999999887542 11
Q ss_pred -----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHH
Q 003457 182 -----NVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTA 256 (818)
Q Consensus 182 -----~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~ 256 (818)
.+-..+.+.+-..++++.|.+.|+...+.. +--...|..++......++..+|...+....... ..++..+..
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 234456667777789999999999999873 3334455555544455688899999999998765 667778888
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHcCCCCCHHH
Q 003457 257 LVHMYTKNGALAKAKALFDSMPE-----RNIATWNAMISGLAS------------HGHAEEALDLFRKLEKEQIVPNDIT 319 (818)
Q Consensus 257 Li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~~~Li~~~~~------------~g~~~~A~~l~~~m~~~g~~pd~~t 319 (818)
+...|.+..++..|.+-|+.+.+ +|+.+.-+|...|.+ .+..++|+++|.+.++..++ |...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhh
Confidence 88899999999999886665553 466666666665542 35678999999999987554 7788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCCCHHHHHHHHHHH
Q 003457 320 FVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV----WKPDVVMWGALLAAC 395 (818)
Q Consensus 320 ~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~pd~~~~~~Li~a~ 395 (818)
-+.+.-+++..|++.+|..+|.++.+. ...+..+|-.+.++|..+|++..|+++|+... .+.+......|..++
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 888899999999999999999999886 44556788999999999999999999998772 345788999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 396 KNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
.+.|++.+|.+.+..++...|.++...++++.++.+.+
T Consensus 727 y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla 764 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA 764 (1018)
T ss_pred HHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence 99999999999999999999999888888777665543
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=1.2e-10 Score=126.93 Aligned_cols=369 Identities=14% Similarity=0.146 Sum_probs=271.8
Q ss_pred hcCCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhCCChhHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHccCChH
Q 003457 60 SSSGDLSYATRLFNSIQ---SPNHFMWNTLIRAQASSLNPDKAIFLYMN----MRRTGFAPNQHTFTFVLKACSNVRSLN 132 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~---~p~~~~yn~Li~~~~~~g~~~~Al~lf~~----m~~~g~~pd~~ty~~ll~~~~~~g~~~ 132 (818)
++..-++.|.+++++.. ..+...|-+-...--.+|+.+....+..+ +...|+..+..-|..=...|-..|..-
T Consensus 417 arLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 417 ARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 55666777888877665 35777777666666677877777776655 345678888888888888888888888
Q ss_pred HHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003457 133 CCKQIHTHVSKSGLDLD--LHVVNCLVRCYSVSSDLNNARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLFDQM 207 (818)
Q Consensus 133 ~A~~~~~~m~~~g~~p~--~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m 207 (818)
.+..+....+..|++.. ..+|+.-...|.+.+.++-|+.+|....+- +...|......--..|..++-..+|+++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 88888888877776532 347777778888888888888888877653 4456766666666678888888888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CChhhH
Q 003457 208 LMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--RNIATW 285 (818)
Q Consensus 208 ~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d~~~~ 285 (818)
... ++-....|....+.+-..|+...|..++..+.+.. +.+..++.+-+.......+++.|..+|.+... +....|
T Consensus 577 v~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~ 654 (913)
T KOG0495|consen 577 VEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVW 654 (913)
T ss_pred HHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhh
Confidence 776 34444555555566667788888888888888775 44677787888888888888888888887764 566677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003457 286 NAMISGLASHGHAEEALDLFRKLEKEQIVPN-DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLG 364 (818)
Q Consensus 286 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~ 364 (818)
.--+....-.++.++|++++++.++. -|+ ...|..+.+.+.+.++++.|...|..=.+. ++.....|-.|.+.=.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEE 730 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHH
Confidence 66666666778888888888888775 445 345666778888888888888888775553 5556778888888888
Q ss_pred HcCCHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 365 RCGKVLEAEELIKRMVW-KP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 365 ~~g~~~~A~~~~~~m~~-~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
+.|++-+|..+|++... .| +...|...+..-.+.|+.+.|..++.++++.-|.+...|..-+.+..+.++
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCccc
Confidence 88888888888888842 34 678888888888888888888888888888777764444444444444443
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.58 E-value=6.4e-12 Score=142.10 Aligned_cols=326 Identities=13% Similarity=0.150 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh---cCCHHHHHHHHHHHH
Q 003457 116 HTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIR---NRTLNVWTTMISGYA 192 (818)
Q Consensus 116 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~---~~d~~~~~~Li~~~~ 192 (818)
.......+.+...|++++|.+++.++++..+. ....|-.|...|-..|+.+++...+-... ..|...|..+.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 33444444444559999999999999988644 66788889999999999999887765443 347778888888888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHH----HHHHHHHHhCCCHH
Q 003457 193 QSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILG----TALVHMYTKNGALA 268 (818)
Q Consensus 193 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~----~~Li~~~~~~g~~~ 268 (818)
+.|++++|.-+|.+.++.. +++...+..-...|.+.|+...|...+.++.....+.+..-+ ...++.+...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999998875 666666666777888899999999999988887543333222 23456677777778
Q ss_pred HHHHHHhhCCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-----------------------
Q 003457 269 KAKALFDSMPE-----RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITF----------------------- 320 (818)
Q Consensus 269 ~A~~~f~~m~~-----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~----------------------- 320 (818)
.|.+.++.... -+...++.++..|.+...++.|.....++......+|...+
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 88888876654 24456788888899999999998888877662222221111
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC---CCHHHHHHHH
Q 003457 321 ---VGVLSACCHAGFIDVGRQIFGSMKRVYG--IEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWK---PDVVMWGALL 392 (818)
Q Consensus 321 ---~~ll~a~~~~g~~~~A~~~~~~m~~~~g--~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~---pd~~~~~~Li 392 (818)
..++-++...+..+....+...+.+. . ...+...|.-+.++|...|++.+|+++|..+... .+...|..+.
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 12233444555555555555555444 4 3345788999999999999999999999999433 2577999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHH
Q 003457 393 AACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLV 444 (818)
Q Consensus 393 ~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~ 444 (818)
..|...|.+++|++.|++++...|++.++...|+.+|.+.|+.++|.+.+..
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999997655
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1e-14 Score=155.24 Aligned_cols=256 Identities=16% Similarity=0.106 Sum_probs=113.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Q 003457 186 TMISGYAQSFRANEALMLFDQMLMEGFEPNSVTL-ASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKN 264 (818)
Q Consensus 186 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~ 264 (818)
.+...+.+.|++++|++++++......+|+...| ..+...+...++++.|.+.++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 3456667778888888888654443223444333 344455566778888888888888765 3355566667666 678
Q ss_pred CCHHHHHHHHhhCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003457 265 GALAKAKALFDSMPE--RNIATWNAMISGLASHGHAEEALDLFRKLEKEQ-IVPNDITFVGVLSACCHAGFIDVGRQIFG 341 (818)
Q Consensus 265 g~~~~A~~~f~~m~~--~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~A~~~~~ 341 (818)
+++++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888876644 456677778888999999999999999987543 34566778888899999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003457 342 SMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 342 ~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~ 419 (818)
+..+. .+.|......++..+...|+.+++.++++... ...|...+..+..+|...|+.++|+.+|+++.+.+|+++
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99986 44468888999999999999999888887762 234566788899999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 420 GVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 420 ~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.....+++++...|+.++|.++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999976654
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=5.9e-11 Score=125.05 Aligned_cols=255 Identities=13% Similarity=0.089 Sum_probs=196.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHhC
Q 003457 187 MISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFE--MGAILGTALVHMYTKN 264 (818)
Q Consensus 187 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~--~~~~~~~~Li~~~~~~ 264 (818)
+..++......++++.-.+.....|++-+...-+....+.-...++++|+.+|+++.+...- .|..+|..++-.--.+
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 44556666677777777777777776655554444555556778888888888888877311 1345555544332222
Q ss_pred CCHH-HHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 265 GALA-KAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSM 343 (818)
Q Consensus 265 g~~~-~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m 343 (818)
.++. .|..++ .+.+=-+.|...+...|.-.++.++|+.+|++.++.+++ ....++.+.+-|...++...|.+.|+.+
T Consensus 313 skLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrA 390 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRA 390 (559)
T ss_pred HHHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHH
Confidence 2222 122222 222334556777778888899999999999999987543 4567888889999999999999999999
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 003457 344 KRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGV 421 (818)
Q Consensus 344 ~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~ 421 (818)
++. .+.|-..|..|.++|.-.+.+.-|+-.|+++ ..+| |...|.+|...|.+.++.++|+..|++++..+-.+..+
T Consensus 391 vdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 391 VDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred Hhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 875 6678999999999999999999999999999 4566 78999999999999999999999999999988777899
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHH
Q 003457 422 YVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 422 y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
|..|+++|.+.++.++|.+.++.-
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999976554
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=8.9e-13 Score=144.90 Aligned_cols=274 Identities=11% Similarity=0.068 Sum_probs=212.2
Q ss_pred ChHHHHHHHHHhhcC--CHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003457 165 DLNNARQVFDEIRNR--TLN-VWTTMISGYAQSFRANEALMLFDQMLMEG--FEPNSVTLASVLSACAQSGCLELGEKVH 239 (818)
Q Consensus 165 ~~~~A~~l~~~m~~~--d~~-~~~~Li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~~~~~~g~~~~A~~i~ 239 (818)
+..+|...|.++.+. |+. ....+.++|.+..++++|.++|+.+.+.. .--+...|.+.+-.+.+ +-+..++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 457788888886543 333 44567789999999999999999987652 11256677777755432 2233333
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003457 240 VFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPER---NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPN 316 (818)
Q Consensus 240 ~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd 316 (818)
.+-+-.-.+..+.+|-++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|+|...|+..+....+ +
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-h 488 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-H 488 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-h
Confidence 33222223667889999999999999999999999988863 5578888888889999999999999988765322 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CC-CCHHHHHHHHH
Q 003457 317 DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEP-KIEHYGCMVDLLGRCGKVLEAEELIKRMV-WK-PDVVMWGALLA 393 (818)
Q Consensus 317 ~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~-pd~~~~~~Li~ 393 (818)
-..|..++..|.++++++.|+-.|+++.+ +.| +.+....+...+.+.|+.++|+++|+++. .. .|+..--..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 34566778899999999999999999885 444 56677778888999999999999999983 23 35655556677
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
.+...+++++|++.++++.++.|++...|..++.+|.+.|+.+.|+.-+..+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 78889999999999999999999999999999999999999999999666653
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=1.8e-11 Score=127.57 Aligned_cols=393 Identities=13% Similarity=0.104 Sum_probs=264.4
Q ss_pred ChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC----CCHHHH-HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH----
Q 003457 46 DHFAASRLLAFCALSSSGDLSYATRLFNSIQS----PNHFMW-NTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQH---- 116 (818)
Q Consensus 46 d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~----p~~~~y-n~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~---- 116 (818)
+..+..-|..-| .......+|+..++-+.+ |+.-.. -.+...|.+...+.+|+.+|+.....-...+..
T Consensus 200 tfsvl~nlaqqy--~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQY--EANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHh--hhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 334444455556 666677788888886653 332211 124456778888999999998776542222222
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc----------------CC
Q 003457 117 TFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRN----------------RT 180 (818)
Q Consensus 117 ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~----------------~d 180 (818)
..+.+.-.+.+.|+++.|..-|++..+. .|+..+-..|+-++...|+-++..+.|.+|.. ++
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3344444578999999999999999885 56777666677778889999999999999864 11
Q ss_pred HHHH-----HHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHH-------------HHH--------HHHHHHHhcCCh
Q 003457 181 LNVW-----TTMISGYAQSF--RANEALMLFDQMLMEGFEPNSV-------------TLA--------SVLSACAQSGCL 232 (818)
Q Consensus 181 ~~~~-----~~Li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~-------------t~~--------~ll~~~~~~g~~ 232 (818)
.... +-++.-.-+.+ +.++++-.--+++.--+.||-. .+. .-...+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 1112 22222222222 1222222222222222223211 011 112246688999
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHH------------------------------------HHhCCCHHHHHHHHhh
Q 003457 233 ELGEKVHVFVKMRGFEMGAILGTALVHM------------------------------------YTKNGALAKAKALFDS 276 (818)
Q Consensus 233 ~~A~~i~~~~~~~g~~~~~~~~~~Li~~------------------------------------~~~~g~~~~A~~~f~~ 276 (818)
+.|.++++-..+..-.......+.|... ....|++++|.+.|++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 9999999888775422222111111111 1235788899999988
Q ss_pred CCCCChhhHHHHH---HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCH
Q 003457 277 MPERNIATWNAMI---SGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKI 353 (818)
Q Consensus 277 m~~~d~~~~~~Li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~ 353 (818)
....|...-.+|. ..+-..|+.++|+++|-++... +..+...+..+.+.|....+...|++++.+.... ++.|+
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDP 592 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCH
Confidence 8887766544443 3567789999999999887653 2346677778888899999999999999887754 67788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 003457 354 EHYGCMVDLLGRCGKVLEAEELIKRM-VW-KPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAE 431 (818)
Q Consensus 354 ~~~~~Li~~~~~~g~~~~A~~~~~~m-~~-~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~ 431 (818)
.....|.+.|-+.|+-..|.+.+-.- .. .-+..+..=|..-|....-+++|+.+|+++.-+.|+.......++.++.|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 99999999999999999998876444 32 33677777777778888889999999999999999966666777788889
Q ss_pred hhchHHHHHHHHHH
Q 003457 432 AESMKMQLEILLVQ 445 (818)
Q Consensus 432 ~G~~~eA~~l~~~~ 445 (818)
.|+|..|.++++..
T Consensus 673 sgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDI 686 (840)
T ss_pred cccHHHHHHHHHHH
Confidence 99999999988766
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=2.4e-10 Score=119.03 Aligned_cols=398 Identities=14% Similarity=0.109 Sum_probs=210.3
Q ss_pred hHHHHHHHHh--cCchHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHH-HHhhc-----------------
Q 003457 16 PPLSLLADKC--KSMHQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATR-LFNSI----------------- 75 (818)
Q Consensus 16 ~tl~~ll~~c--~~~~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~-lf~~~----------------- 75 (818)
.|=++++.-- +..++.--++..|...|..-+..+--.|+++.+|-...++--|+. -|-.|
T Consensus 117 ~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 117 ETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred cchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3444444432 445566778888888898888888877777665555555443321 12222
Q ss_pred ------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 003457 76 ------QSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLD 149 (818)
Q Consensus 76 ------~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~ 149 (818)
......+|..||+++++--..++|.++|++......+.+..+||.+|.+-+-.. .++++.+|+...+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCc
Confidence 224556888888888888888888888888888778888888888887754332 2778888888888888
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003457 150 LHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQS 229 (818)
Q Consensus 150 ~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 229 (818)
..|+|+++++..+.|+++.|.+.+ ++++.+|++.|+.|...+|..+|..+.+.
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 888888888888888887765443 33444444444444444444444444443
Q ss_pred CChhH-HHHHHHHHHHc----CC----CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--------C---ChhhHHHHH
Q 003457 230 GCLEL-GEKVHVFVKMR----GF----EMGAILGTALVHMYTKNGALAKAKALFDSMPE--------R---NIATWNAMI 289 (818)
Q Consensus 230 g~~~~-A~~i~~~~~~~----g~----~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--------~---d~~~~~~Li 289 (818)
++..+ +..++..+... .+ +.+...|..-+..|....+.+.|.++-.-+.. + ...-|..+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 33322 22222222211 11 11223333334444444444444444332221 0 111233344
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC--
Q 003457 290 SGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCG-- 367 (818)
Q Consensus 290 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g-- 367 (818)
...++....+.-+..|+.|+-.-.-|+..+...++++....+.++-..+++..++.- |...+.....-+...+++.+
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~h 484 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLH 484 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCC
Confidence 444444555555555555544444444455555555555555554444444444432 22222222222222222211
Q ss_pred ------------------CHHHHHH-HHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCcc--hH
Q 003457 368 ------------------KVLEAEE-LIKRM-VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALE---PNNHG--VY 422 (818)
Q Consensus 368 ------------------~~~~A~~-~~~~m-~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~---P~~~~--~y 422 (818)
++.++.+ .-.++ ..+-.....+..+-.+.+.|+.++|.+++....+.+ |..+. +.
T Consensus 485 p~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm 564 (625)
T KOG4422|consen 485 PLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAM 564 (625)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhH
Confidence 0111110 01111 122334455555556677888888888777765432 33221 22
Q ss_pred HHHHHHHHHhhchHHHHHHHHHH
Q 003457 423 VVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 423 ~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
..+.+.-.+....-.|..+++.+
T Consensus 565 ~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 565 AELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Confidence 23344444555556666655554
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.53 E-value=4.9e-10 Score=122.27 Aligned_cols=354 Identities=10% Similarity=0.028 Sum_probs=254.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 82 MWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYS 161 (818)
Q Consensus 82 ~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~ 161 (818)
+|+.-...|.+.+.++-|..+|....+. ..-+...|......=-..|..++...++++++..-++ ....|.....-+-
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w 595 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKW 595 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHH
Confidence 4555555555666666666666666653 2223445555544444557777777777777776433 4455666666677
Q ss_pred hCCChHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003457 162 VSSDLNNARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKV 238 (818)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i 238 (818)
..||+..|+.++.+..+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+...--+++.++|.++
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 778888888887777653 4456777777777888888888888877654 56666665555555556777888888
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003457 239 HVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--R-NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVP 315 (818)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~-d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 315 (818)
+++.++. ++.-...|..+.+.+-+.++++.|.+.|..=.+ | .+..|-.|...=-+.|..-+|..++++.+.++++
T Consensus 674 lEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk- 751 (913)
T KOG0495|consen 674 LEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK- 751 (913)
T ss_pred HHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-
Confidence 8888776 344456777777888888888888887776554 3 4456777776667777888888888887776544
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003457 316 NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAAC 395 (818)
Q Consensus 316 d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~ 395 (818)
+...|...++.-.+.|+.+.|..+..+.++. ++.+...|..-|.+..+.++-.++...+++.. .|......+...+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lf 827 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLF 827 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHH
Confidence 6667777788888888888888888887775 67777778777777777777667777776664 4556666777778
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
....++++|.+.|.++++++|++-++|..+-..+.+.|.-++-.++++..
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c 877 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKC 877 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999888888877766
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.51 E-value=1.7e-10 Score=130.74 Aligned_cols=347 Identities=12% Similarity=0.122 Sum_probs=249.0
Q ss_pred cCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 003457 61 SSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQI 137 (818)
Q Consensus 61 k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~ 137 (818)
..|++++|.+++.++++ .+...|.+|...|-+.|+.++++..+-..-..... |...|..+.....+.|++++|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHH
Confidence 44999999999999874 56779999999999999999999887665554333 667899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCH----H----HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003457 138 HTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTL----N----VWTTMISGYAQSFRANEALMLFDQMLM 209 (818)
Q Consensus 138 ~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~----~----~~~~Li~~~~~~g~~~~A~~l~~~m~~ 209 (818)
|.++++..+. +...+-.-+..|-+.|+...|.+.|.++.+.++ . .-...+..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999998644 555555677889999999999999999876543 1 223345667777777899998888766
Q ss_pred cC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC---------------------------CCCcHHH-HHHHHHH
Q 003457 210 EG-FEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRG---------------------------FEMGAIL-GTALVHM 260 (818)
Q Consensus 210 ~g-~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g---------------------------~~~~~~~-~~~Li~~ 260 (818)
.+ -.-+...++.++..+.+..+++.+........... ..++..+ +..+...
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 22 13344567777788888888888888777666511 1222333 2222223
Q ss_pred HHhCCCHHHHHHHHhhCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003457 261 YTKNGALAKAKALFDSMPE----RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVG 336 (818)
Q Consensus 261 ~~~~g~~~~A~~~f~~m~~----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A 336 (818)
..+.++..+++.-|-.... .+...|.-+..+|.+.|++.+|+.+|..+......-+...|..+..+|...+.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 3344444444443332222 355677888888999999999999998888764444566788888888889999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 003457 337 RQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-----------WKPDVVMWGALLAACKNHGNIEVAE 405 (818)
Q Consensus 337 ~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-----------~~pd~~~~~~Li~a~~~~g~~~~A~ 405 (818)
.+.|++++.. .+.+...--.|...|.+.|+.++|.+.++.+. ..|+........+.+.+.|+.++-+
T Consensus 469 ~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 469 IEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999988864 44456666778888888999999999888863 1133344444555667777777755
Q ss_pred HHHHHH
Q 003457 406 RVVKEI 411 (818)
Q Consensus 406 ~~~~~~ 411 (818)
.....+
T Consensus 547 ~t~~~L 552 (895)
T KOG2076|consen 547 NTASTL 552 (895)
T ss_pred HHHHHH
Confidence 544333
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=3.4e-12 Score=140.44 Aligned_cols=279 Identities=14% Similarity=0.063 Sum_probs=226.2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC------CHHHHHHHHHHHHHcCChHHHHHH
Q 003457 130 SLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR------TLNVWTTMISGYAQSFRANEALML 203 (818)
Q Consensus 130 ~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~------d~~~~~~Li~~~~~~g~~~~A~~l 203 (818)
+.++|...|.++-++ +.-+..+...+..+|...+++++|+++|+.+.+. +...|.+.+-.+.+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 567888888885444 3435577888999999999999999999999864 566787776554332 22333
Q ss_pred HH-HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCCh
Q 003457 204 FD-QMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNI 282 (818)
Q Consensus 204 ~~-~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~ 282 (818)
+. .+.+. -+-.+.+|..+.++|.-+++.+.|.+.|+++++.+ +.....|+.+..-+....++|+|...|+.....|+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 32 23333 25567899999999999999999999999999875 44778899999999999999999999999998666
Q ss_pred hhHH---HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 003457 283 ATWN---AMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCM 359 (818)
Q Consensus 283 ~~~~---~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~L 359 (818)
..|| -|...|.++++++.|+-.|+++.+.++. +.+....++..+.+.|+.++|+++++++... .+.|+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHH
Confidence 6554 5677899999999999999999987544 5677778888999999999999999998875 44566666667
Q ss_pred HHHHHHcCCHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 360 VDLLGRCGKVLEAEELIKRMV-WKPD-VVMWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 360 i~~~~~~g~~~~A~~~~~~m~-~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
+..+...+++++|++.+++++ ..|+ ...+..+...|.+.|+.+.|+.-|--|.+++|.-
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 777899999999999999994 4565 6778888899999999999999999999999983
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=3.7e-11 Score=134.11 Aligned_cols=248 Identities=13% Similarity=0.026 Sum_probs=167.9
Q ss_pred HhCCChHHHHHHHHHhhcCCHH--HH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003457 161 SVSSDLNNARQVFDEIRNRTLN--VW--TTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGE 236 (818)
Q Consensus 161 ~~~g~~~~A~~l~~~m~~~d~~--~~--~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~ 236 (818)
.+.|+.+.|.+.|.++.+.+.. .. -.....+...|++++|.+.++++.+.. +-+...+..+...|.+.|+++++.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 4555555555555555442211 11 122445555566666666666655543 334445555555566666666666
Q ss_pred HHHHHHHHcCCCCcH-------HHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHH
Q 003457 237 KVHVFVKMRGFEMGA-------ILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFR 306 (818)
Q Consensus 237 ~i~~~~~~~g~~~~~-------~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~ 306 (818)
+++..+.+....++. ..+..++....+..+.+...++++.+.+ .++.....+...+...|+.++|.+.++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666655432111 1223334434444556667777777654 477788889999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH
Q 003457 307 KLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDV 385 (818)
Q Consensus 307 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~ 385 (818)
+..+. .||.... ++.+....++.+++.+..+...+. .+.|...+..+...+.+.+++++|.+.|+++ ...|+.
T Consensus 288 ~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 288 DGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 98875 4454322 233444568999999999998875 5667778889999999999999999999998 567999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIALE 415 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~ 415 (818)
..+..+...+.+.|+.++|.+++++.+.+-
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 998999999999999999999999987753
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=5.8e-11 Score=125.79 Aligned_cols=377 Identities=13% Similarity=0.074 Sum_probs=249.4
Q ss_pred hcCCCHHHHHHHHhhcC--CCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCChHHHH
Q 003457 60 SSSGDLSYATRLFNSIQ--SPN-HFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQH-TFTFVLKACSNVRSLNCCK 135 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~--~p~-~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~-ty~~ll~~~~~~g~~~~A~ 135 (818)
-+.|++++|++.|.+.+ .|+ +.-|.....+|...|++++.++--.+..+ +.|+-. .+..-.+++-..|++++|+
T Consensus 126 f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg~~~eal 203 (606)
T KOG0547|consen 126 FRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLGKFDEAL 203 (606)
T ss_pred hhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhccHHHHH
Confidence 48889999999999887 477 77888888888999999988887777776 455543 5666666777777777765
Q ss_pred HHHHHHH-HcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHH-----------------------HHHHHH
Q 003457 136 QIHTHVS-KSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR---TLN-----------------------VWTTMI 188 (818)
Q Consensus 136 ~~~~~m~-~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~---d~~-----------------------~~~~Li 188 (818)
.=..-.. -.|+. +..+--.+=+.+-+.+ ...+.+-+.+=..+ ... +...+.
T Consensus 204 ~D~tv~ci~~~F~-n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~ 281 (606)
T KOG0547|consen 204 FDVTVLCILEGFQ-NASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALA 281 (606)
T ss_pred HhhhHHHHhhhcc-cchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHH
Confidence 4222111 11111 1111000000110100 11111111100000 000 111111
Q ss_pred HHHH--HcC---ChHHHHHHHHHHHHc---CCCCC---------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcH
Q 003457 189 SGYA--QSF---RANEALMLFDQMLME---GFEPN---------SVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGA 251 (818)
Q Consensus 189 ~~~~--~~g---~~~~A~~l~~~m~~~---g~~pd---------~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~ 251 (818)
.++. ..+ .+.+|...+.+-... ...-+ ..+.......+.-.|+.-.+..-++..++... .+.
T Consensus 282 ~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~-~~~ 360 (606)
T KOG0547|consen 282 EALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP-AFN 360 (606)
T ss_pred HHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc-ccc
Confidence 1111 111 233343333332111 01111 11222222233456888999999999998763 334
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 252 ILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACC 328 (818)
Q Consensus 252 ~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 328 (818)
..|-.+..+|...++.++..+.|++..+ .|+.+|..-.+.+.-.+++++|..-|++.+...+. +...|.-+.-+..
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALY 439 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHH
Confidence 4477788899999999999999998875 46778888888888889999999999999886432 5567777777777
Q ss_pred HcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCC---------HHHHHHHHHHHHHc
Q 003457 329 HAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPD---------VVMWGALLAACKNH 398 (818)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd---------~~~~~~Li~a~~~~ 398 (818)
+.+++++++..|+..+++ ++..+..|+.....+..++++++|.+.|+.+. ..|. ......++. +.-.
T Consensus 440 r~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk 516 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWK 516 (606)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchh
Confidence 899999999999999987 77788999999999999999999999999873 3333 122222222 2245
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 399 GNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 399 g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+++..|+++++++++++|....+|..|+.+..+.|+.++|+++|+..
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999988654
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.49 E-value=6.5e-11 Score=132.11 Aligned_cols=274 Identities=9% Similarity=0.033 Sum_probs=206.1
Q ss_pred hCCChHHHHHHHHHhhcC--CHHHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCChhHHH
Q 003457 162 VSSDLNNARQVFDEIRNR--TLNVWTTM-ISGYAQSFRANEALMLFDQMLMEGFEPNSVTLA--SVLSACAQSGCLELGE 236 (818)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~--d~~~~~~L-i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~~~~~~g~~~~A~ 236 (818)
..|++++|++.+....+. ++..+..+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|++++|.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 368999999888876553 23333333 45558889999999999999865 56654333 3356778899999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC---Chh--------hHHHHHHHHHHcCCHHHHHHHH
Q 003457 237 KVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPER---NIA--------TWNAMISGLASHGHAEEALDLF 305 (818)
Q Consensus 237 ~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~---d~~--------~~~~Li~~~~~~g~~~~A~~l~ 305 (818)
+.++++.+.. +.++.+...+...|.+.|++++|.+++..+.+. +.. +|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999886 667788888999999999999999999888752 111 3334444444455566666677
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-
Q 003457 306 RKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP- 383 (818)
Q Consensus 306 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p- 383 (818)
+++-+. .+.+......+...+...|+.++|.+.+++..+. +++.... ++.+....++.+++++..++. +..|
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 666443 2346777788889999999999999999888753 5555332 233334569999999999887 3445
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 384 DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 384 d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
|...+..+...|.+.+++++|.+.|+++++..|+ ...+..|+.++.+.|+.++|.++++..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-AYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4667888899999999999999999999999998 556778999999999999999977665
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.5e-10 Score=122.03 Aligned_cols=351 Identities=9% Similarity=0.024 Sum_probs=236.9
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-HHHH
Q 003457 77 SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLH-VVNC 155 (818)
Q Consensus 77 ~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ 155 (818)
+.|..-+......+.+.|....|+..|...... .+-.=..|..|...+. +.+ +...+.......+.. .--.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~lit---~~e----~~~~l~~~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELIT---DIE----ILSILVVGLPSDMHWMKKFF 232 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhhc---hHH----HHHHHHhcCcccchHHHHHH
Confidence 455555555556666777788888888776653 1212333433333322 222 222222211111111 1122
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhc
Q 003457 156 LVRCYSVSSDLNNARQVFDEIRNR----TLNVWTTMISGYAQSFRANEALMLFDQMLMEGF--EPNSVTLASVLSACAQS 229 (818)
Q Consensus 156 Li~~y~~~g~~~~A~~l~~~m~~~----d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~~~~~~ 229 (818)
+..+|......+++..-.+..... +...-+....+.....++|+|+.+|+++++... --|..+|..++-.-...
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 344555555666666665555443 222223333445566788888888888877631 12556776665432221
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHH
Q 003457 230 GCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFR 306 (818)
Q Consensus 230 g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~ 306 (818)
. ...++.+-...--+-.+.+...+.+.|+-.++.++|...|++..+ .....|+.|..-|...++...|++.|+
T Consensus 313 s----kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 S----KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred H----HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1 112222222111123345666778888888899999999998876 345689999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC--CC
Q 003457 307 KLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWK--PD 384 (818)
Q Consensus 307 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--pd 384 (818)
++++-.+. |-..|..|.++|.-.+...-|+-.|++..+- -+-|...|.+|.++|.+.++.++|++.|+++..- .+
T Consensus 389 rAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 389 RAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 99987544 7788999999999999999999999998863 4557899999999999999999999999998422 34
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------cCCCCcchHHHHHHHHHHhhchHHHHHHH
Q 003457 385 VVMWGALLAACKNHGNIEVAERVVKEIIA-------LEPNNHGVYVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 385 ~~~~~~Li~a~~~~g~~~~A~~~~~~~~~-------~~P~~~~~y~~L~~~l~~~G~~~eA~~l~ 442 (818)
...+..|.+.|.+.++.++|.+.|++.++ +.|.-..+...|+.-+.+.+++++|..+-
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 58899999999999999999999998887 45555667777999999999999998844
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.47 E-value=1.9e-10 Score=129.11 Aligned_cols=283 Identities=12% Similarity=0.019 Sum_probs=145.1
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC--CH--HHHHHHHHHHHHcCChHHHHH
Q 003457 127 NVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR--TL--NVWTTMISGYAQSFRANEALM 202 (818)
Q Consensus 127 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~--d~--~~~~~Li~~~~~~g~~~~A~~ 202 (818)
..|+++.|.+.+.+..+.... ....+......+.+.|+.+.|.+.|.+..+. +. ...-.....+...|++++|.+
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 456666666666655554322 1222333445555666666666666665332 21 222234555666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH-------HhCCCHHHHHHHHh
Q 003457 203 LFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMY-------TKNGALAKAKALFD 275 (818)
Q Consensus 203 l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~-------~~~g~~~~A~~~f~ 275 (818)
.++++.+.. +-+...+..+...+.+.|+++++.+.+..+.+.+..........-..++ ......+...+.++
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666666653 3344555566666666666666666666666664322221111111111 11122233344444
Q ss_pred hCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHhCCCC
Q 003457 276 SMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVG-VLSACCHAGFIDVGRQIFGSMKRVYGIEP 351 (818)
Q Consensus 276 ~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~g~~~~A~~~~~~m~~~~g~~p 351 (818)
...+ .+...+..+...+...|++++|.+.+++..+..+......+.. ........++.+.+.+.+++..+. .+.
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCC
Confidence 4443 3566666677777777777777777777766532211111111 111122235555566666555543 222
Q ss_pred CH--HHHHHHHHHHHHcCCHHHHHHHHHH--c-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 352 KI--EHYGCMVDLLGRCGKVLEAEELIKR--M-VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 352 ~~--~~~~~Li~~~~~~g~~~~A~~~~~~--m-~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
|. ....++...+.+.|++++|.+.|++ + ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23 4445556666666666666666662 2 2345555555666666666666666666665543
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=1.2e-10 Score=130.72 Aligned_cols=292 Identities=13% Similarity=-0.002 Sum_probs=209.2
Q ss_pred HHHHHHHHH--HhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003457 82 MWNTLIRAQ--ASSLNPDKAIFLYMNMRRTGFAPNQH-TFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVR 158 (818)
Q Consensus 82 ~yn~Li~~~--~~~g~~~~Al~lf~~m~~~g~~pd~~-ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~ 158 (818)
.+..+.++. ...|+++.|.+.+.+..+. .|+.. .+.....+..+.|+.+.+.+.+.++.+....+...+......
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 344455544 3578999999999887664 34433 445556778888999999999999877654433345555678
Q ss_pred HHHhCCChHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCC
Q 003457 159 CYSVSSDLNNARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLA-SVLSAC---AQSGC 231 (818)
Q Consensus 159 ~y~~~g~~~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~~~---~~~g~ 231 (818)
.+...|+++.|.+.++++.+. +...+..+...+.+.|++++|.+.+.++.+.++. +...+. ....++ ...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999988763 6667888999999999999999999999988643 333332 111221 22222
Q ss_pred hhHHHHHHHHHHHcCC---CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CChhh---HHHHHHHHHHcCCHHHHHH
Q 003457 232 LELGEKVHVFVKMRGF---EMGAILGTALVHMYTKNGALAKAKALFDSMPE--RNIAT---WNAMISGLASHGHAEEALD 303 (818)
Q Consensus 232 ~~~A~~i~~~~~~~g~---~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d~~~---~~~Li~~~~~~g~~~~A~~ 303 (818)
.+++...+..+.+... +.+...+..++..+...|+.++|.+++++..+ ||... ...........++.+++++
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH
Confidence 3333345555554421 23778888899999999999999999998876 33321 1222223344578888999
Q ss_pred HHHHHHHcCCCCC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 304 LFRKLEKEQIVPN-D--ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 304 l~~~m~~~g~~pd-~--~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
.+++..+. .|+ . .....+...|.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 321 ~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 321 LIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99888876 333 3 45668889999999999999999953332 45789888999999999999999999999875
No 48
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=2.2e-10 Score=115.83 Aligned_cols=285 Identities=12% Similarity=0.110 Sum_probs=163.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCChHHH
Q 003457 93 SLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLD---LHVVNCLVRCYSVSSDLNNA 169 (818)
Q Consensus 93 ~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~Li~~y~~~g~~~~A 169 (818)
+++.++|+++|-+|.+.... +..+..+|.+.|.+.|..+.|+++++.+.+..--+. ......|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 46788999999999885333 455667788888899999999999998887532111 12445566777888888888
Q ss_pred HHHHHHhhcCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHH
Q 003457 170 RQVFDEIRNRTL---NVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSV----TLASVLSACAQSGCLELGEKVHVFV 242 (818)
Q Consensus 170 ~~l~~~m~~~d~---~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~~~~~~g~~~~A~~i~~~~ 242 (818)
+++|..+.+.+. .+...|+..|...++|++|++.-+++.+.+-.+... .|..+...+....+.+.|...+.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 888888776432 356677788888888888888887777665333322 1222222333334444444444444
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003457 243 KMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVG 322 (818)
Q Consensus 243 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 322 (818)
.+.+ +..+. .--.+...+...|+++.|++.++...+.++.--..+...
T Consensus 207 lqa~-~~cvR-------------------------------Asi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 207 LQAD-KKCVR-------------------------------ASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred HhhC-cccee-------------------------------hhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 4432 11222 222334455555666666666666555533323344455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHcCCCCCHHHHHHHHHHHH---Hc
Q 003457 323 VLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELI-KRMVWKPDVVMWGALLAACK---NH 398 (818)
Q Consensus 323 ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~-~~m~~~pd~~~~~~Li~a~~---~~ 398 (818)
|..+|.+.|+.+++...+..+.+. .+....-..+.+.-....-.+.|...+ +.+..+|+...+..|+..-. ..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 556666666666666666655543 333334444444444444444444433 33455666666666665432 23
Q ss_pred CCHHHHHHHHHHHHh
Q 003457 399 GNIEVAERVVKEIIA 413 (818)
Q Consensus 399 g~~~~A~~~~~~~~~ 413 (818)
|...+.+..++.|+.
T Consensus 332 g~~k~sL~~lr~mvg 346 (389)
T COG2956 332 GRAKESLDLLRDMVG 346 (389)
T ss_pred cchhhhHHHHHHHHH
Confidence 334555555555554
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-09 Score=118.29 Aligned_cols=395 Identities=10% Similarity=0.043 Sum_probs=280.7
Q ss_pred CCCChHHHHHHHHHhhhhcCCCHHHHHHHHhh--cCCCCHHHHHHHHHHHHhCCChhHHHHHHH----HHHHc-------
Q 003457 43 RIQDHFAASRLLAFCALSSSGDLSYATRLFNS--IQSPNHFMWNTLIRAQASSLNPDKAIFLYM----NMRRT------- 109 (818)
Q Consensus 43 ~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~--~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~----~m~~~------- 109 (818)
+..|+.-.--+..++ .-.++++.|..+... +.+.|..+.......+.+..++++|+.++. .+...
T Consensus 45 l~~dp~d~~~~aq~l--~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~ 122 (611)
T KOG1173|consen 45 LTNDPADIYWLAQVL--YLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA 122 (611)
T ss_pred ccCChHHHHHHHHHH--HhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh
Confidence 334444434445555 567888888888764 457899999999999999999999999988 22110
Q ss_pred --CCCCCHHH----HHHHH-------HHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--------------
Q 003457 110 --GFAPNQHT----FTFVL-------KACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSV-------------- 162 (818)
Q Consensus 110 --g~~pd~~t----y~~ll-------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~-------------- 162 (818)
-+.+|..- -+.-. ..|....+.++|+..+.+.+...+. ....+..|+....-
T Consensus 123 ~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~ 201 (611)
T KOG1173|consen 123 ANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLVSAHMLTAQEEFELLESLDL 201 (611)
T ss_pred hceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHHHHHhcchhHHHHHHhcccH
Confidence 01111111 11111 2234455677788887777665433 11222222221111
Q ss_pred ---CC-ChHHHHHHHHHhh----c----------------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 003457 163 ---SS-DLNNARQVFDEIR----N----------------RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVT 218 (818)
Q Consensus 163 ---~g-~~~~A~~l~~~m~----~----------------~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 218 (818)
.+ +.+.-+.+|+-.. . .++...-....-+....++.+..++++...+.. ++....
T Consensus 202 a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~ 280 (611)
T KOG1173|consen 202 AMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPC 280 (611)
T ss_pred HhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcch
Confidence 01 1111122222110 0 123334445566778899999999999998874 667777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHHc
Q 003457 219 LASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERN---IATWNAMISGLASH 295 (818)
Q Consensus 219 ~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d---~~~~~~Li~~~~~~ 295 (818)
+..-|.++...|+..+-..+-..+++.- |..+.+|-++.-.|.-.|+..+|.+.|.+...-| ...|-.+...|+-.
T Consensus 281 ~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e 359 (611)
T KOG1173|consen 281 LPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGE 359 (611)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhc
Confidence 7777778888998888887777888763 6677888889998988999999999999877533 45899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003457 296 GHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEEL 375 (818)
Q Consensus 296 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~ 375 (818)
+..|+|+..|..+-+.= +-...-+.-+..-|.+.++.+.|.+.|.+.... .+-|+...+-+.-.....+.+.+|..+
T Consensus 360 ~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~ 436 (611)
T KOG1173|consen 360 GEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKY 436 (611)
T ss_pred chHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHH
Confidence 99999999998876641 111122333455688899999999999998864 555678888888888889999999999
Q ss_pred HHHcC--------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 376 IKRMV--------WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 376 ~~~m~--------~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
|+... .++ =..+++.|+.+|.+.+++++|+..+++++.+.|.+.++|..++-+|...|+++.|.+.+...
T Consensus 437 f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 437 FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 98873 111 24578999999999999999999999999999999999999999999999999999966444
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.40 E-value=1.5e-12 Score=138.52 Aligned_cols=253 Identities=12% Similarity=0.066 Sum_probs=65.8
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 003457 87 IRAQASSLNPDKAIFLYMNMRRTGFAPNQ-HTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSD 165 (818)
Q Consensus 87 i~~~~~~g~~~~Al~lf~~m~~~g~~pd~-~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~ 165 (818)
...+.+.|++++|++++++.......|+. ..+..+...+...++.+.|++.++++++.+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44445555555555555433322212222 23333333444455555555555555554322 33344444444 45555
Q ss_pred hHHHHHHHHHhhc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003457 166 LNNARQVFDEIRN--RTLNVWTTMISGYAQSFRANEALMLFDQMLMEG-FEPNSVTLASVLSACAQSGCLELGEKVHVFV 242 (818)
Q Consensus 166 ~~~A~~l~~~m~~--~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~ 242 (818)
.++|.+++.+.-+ ++...+..++..+.+.++++++.++++++.+.. .+.+...|..+...+.+.|+.++|.+.++++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544422 233344445555555555555555555544321 1234444455555555555555565555555
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003457 243 KMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDIT 319 (818)
Q Consensus 243 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 319 (818)
++.. |.+..+...++..+...|+.+++.++++...+ .|...|..+..+|...|+.++|+..|++..+.. +.|...
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~ 250 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLW 250 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccc
Confidence 5553 33344555555555555555554444443332 344445555555555555555555555555432 124444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 320 FVGVLSACCHAGFIDVGRQIFGSM 343 (818)
Q Consensus 320 ~~~ll~a~~~~g~~~~A~~~~~~m 343 (818)
...+..++...|+.++|.++.+++
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccc
Confidence 445555555555555555555443
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.38 E-value=4.3e-10 Score=113.76 Aligned_cols=286 Identities=12% Similarity=0.074 Sum_probs=191.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-CHH------HHHHHHHHHHHcCChHHH
Q 003457 128 VRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR-TLN------VWTTMISGYAQSFRANEA 200 (818)
Q Consensus 128 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~-d~~------~~~~Li~~~~~~g~~~~A 200 (818)
.++.++|...|-+|.+.... +..+..+|.+.|-+.|..|.|+++-+.+.++ |.. +...|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 35667777777777764322 4455666777777777777777777766543 322 344566667777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC
Q 003457 201 LMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPER 280 (818)
Q Consensus 201 ~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~ 280 (818)
+.+|..+.+.+ .--......|+..|....++++|..+-+++.+.+..+... .+..
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~---eIAq--------------------- 181 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV---EIAQ--------------------- 181 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh---HHHH---------------------
Confidence 77777776544 2233455566666766777777776666666654322211 1223
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003457 281 NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMV 360 (818)
Q Consensus 281 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li 360 (818)
.|.-|...+....+.++|..++.+..+...+ ....-..+.+.....|+++.|.+.++.+.+. +..--..+...|.
T Consensus 182 ---fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~ 256 (389)
T COG2956 182 ---FYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLY 256 (389)
T ss_pred ---HHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 3444666677788999999999999886433 2333345668899999999999999998876 2222357788999
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-H--hhchH
Q 003457 361 DLLGRCGKVLEAEELIKRM-VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA-E--AESMK 436 (818)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~-~--~G~~~ 436 (818)
.+|...|+.++.+..+.++ ...+....-..+...-....-.+.|...+.+-+..+|+ ...+..|++... + -|+.+
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt-~~gf~rl~~~~l~daeeg~~k 335 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPT-MRGFHRLMDYHLADAEEGRAK 335 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc-HHHHHHHHHhhhccccccchh
Confidence 9999999999999999887 44566666666666555566688888889888999998 555555555543 3 34456
Q ss_pred HHHHHHHHH
Q 003457 437 MQLEILLVQ 445 (818)
Q Consensus 437 eA~~l~~~~ 445 (818)
+-..+++.|
T Consensus 336 ~sL~~lr~m 344 (389)
T COG2956 336 ESLDLLRDM 344 (389)
T ss_pred hhHHHHHHH
Confidence 555544443
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=1.7e-08 Score=106.82 Aligned_cols=411 Identities=10% Similarity=0.098 Sum_probs=304.8
Q ss_pred CChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 003457 45 QDHFAASRLLAFCALSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFV 121 (818)
Q Consensus 45 ~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~l 121 (818)
.+...|-.....- ..++++..|..+|++... .+...|-.-+..=.++.....|..++++.+..=...|. .+--.
T Consensus 71 ~~~~~WikYaqwE--esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWE--ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKY 147 (677)
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHH
Confidence 3444555555555 567889999999999874 56777878888888999999999999998874333333 33333
Q ss_pred HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh--cCCHHHHHHHHHHHHHcCChHH
Q 003457 122 LKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIR--NRTLNVWTTMISGYAQSFRANE 199 (818)
Q Consensus 122 l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~--~~d~~~~~~Li~~~~~~g~~~~ 199 (818)
+..=-..|++..|.++|..-.+ ..|+...|++.|+.-.+-+.++.|..++++.. .|++.+|--..+.-.++|+...
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHH
Confidence 4444467999999999999877 68999999999999999999999999999865 5788889888888899999999
Q ss_pred HHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHhCCCHHHHHHHH-
Q 003457 200 ALMLFDQMLME-GF-EPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMG--AILGTALVHMYTKNGALAKAKALF- 274 (818)
Q Consensus 200 A~~l~~~m~~~-g~-~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~~~f- 274 (818)
|..+|....+. |- ..+...+.+...--.++..++.|.-+|..++.. ++.+ ...|..+...--+-|+........
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999988764 10 112223333444344677788999999988876 3333 456666666666667655444332
Q ss_pred -------hhCCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HHcCCHH
Q 003457 275 -------DSMPER---NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPND-------ITFVGVLSAC---CHAGFID 334 (818)
Q Consensus 275 -------~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~---~~~g~~~ 334 (818)
+.+.+. |-.+|.-.+..--..|+.+...++|++.+.. ++|-. ..|..+=-+| ....+.+
T Consensus 305 ~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e 383 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE 383 (677)
T ss_pred hhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 222222 5567777777778889999999999999876 44422 1222221122 3468999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003457 335 VGRQIFGSMKRVYGIEPKIEHYGCM----VDLLGRCGKVLEAEELIKRM-VWKPDVVMWGALLAACKNHGNIEVAERVVK 409 (818)
Q Consensus 335 ~A~~~~~~m~~~~g~~p~~~~~~~L----i~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~ 409 (818)
.+.++|+..++. ++....++.-+ ..-..++.+...|.+++-.+ +.-|-..+|...|..-.+.+++|....+|+
T Consensus 384 rtr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 384 RTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999998875 55555555544 34445889999999999887 566899999999998899999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH--------HHHHHHhhhhcccCCCCC
Q 003457 410 EIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV--------LFAGLASAADILQNPDFE 464 (818)
Q Consensus 410 ~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~--------~ll~~~~~~~~~~~~~~~ 464 (818)
+.++-.|.+..+|...+.+-...|+.|.|..+++..+ -++|-.-++--.+.++++
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 9999999999999999999999999999999987764 355555544334444444
No 53
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.36 E-value=2.3e-09 Score=119.90 Aligned_cols=398 Identities=16% Similarity=0.095 Sum_probs=272.4
Q ss_pred hCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHH
Q 003457 41 SSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAP-NQH 116 (818)
Q Consensus 41 ~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~p-d~~ 116 (818)
..+.-|..+|.+|.-.. .++|+++.+-+.|++... .....|+.+-..|...|.-..|+.+++.-....-.| |..
T Consensus 317 ~~~qnd~ai~d~Lt~al--~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFAL--SRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hhhcchHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 34557899999988666 999999999999998764 566789999999999999999999998876544334 444
Q ss_pred HHHHHHHHHHc-cCChHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhC-----------CChHHHHHHHHHhhcC-
Q 003457 117 TFTFVLKACSN-VRSLNCCKQIHTHVSKS--GL--DLDLHVVNCLVRCYSVS-----------SDLNNARQVFDEIRNR- 179 (818)
Q Consensus 117 ty~~ll~~~~~-~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~Li~~y~~~-----------g~~~~A~~l~~~m~~~- 179 (818)
.+...-+.|.+ .+..+++..+..+++.. +. ......|..+.-+|... ....++.+.+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 55555566654 47778888877777762 11 11234455555555431 1245567777777553
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHH
Q 003457 180 --TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTAL 257 (818)
Q Consensus 180 --d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~L 257 (818)
|+.+...+.--|+..++.+.|++..++.++.+-.-+...|..+...+...+++.+|+.+.+.....- +.|......-
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 5555556667788889999999999999988657788888888888889999999999988877641 1111111111
Q ss_pred HHHHHhCCCHHHHHHHHhhCCC--------------------------------CChhhHHHHHHHHHHcCCHHHHHHHH
Q 003457 258 VHMYTKNGALAKAKALFDSMPE--------------------------------RNIATWNAMISGLASHGHAEEALDLF 305 (818)
Q Consensus 258 i~~~~~~g~~~~A~~~f~~m~~--------------------------------~d~~~~~~Li~~~~~~g~~~~A~~l~ 305 (818)
++.-...++.++|......+.. ..+.++..+.......+ +.+..-.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhccccc
Confidence 2222233444444333222210 01122222222111110 0000000
Q ss_pred HHHHHcCC--CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003457 306 RKLEKEQI--VPND------ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIK 377 (818)
Q Consensus 306 ~~m~~~g~--~pd~------~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~ 377 (818)
. |..... .|+. ..+......+.+.+..++|..++.+..+. .+.....|......+...|++++|.+.|.
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 0 111111 2232 12334456778888999999888887754 45567788888889999999999999998
Q ss_pred Hc-CCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 378 RM-VWKPD-VVMWGALLAACKNHGNIEVAER--VVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 378 ~m-~~~pd-~~~~~~Li~a~~~~g~~~~A~~--~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
.+ ...|+ +....++...+.+.|+..-|.. +++.+++++|.++++|..++.++.+.|+.++|-+.|....
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 87 46675 7888999999999998887777 9999999999999999999999999999999999888774
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=4.4e-08 Score=103.71 Aligned_cols=391 Identities=9% Similarity=0.098 Sum_probs=270.6
Q ss_pred chHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 003457 28 MHQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQ--SPNHFMWNTLIRAQASSLNPDKAIFLYMN 105 (818)
Q Consensus 28 ~~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~--~p~~~~yn~Li~~~~~~g~~~~Al~lf~~ 105 (818)
...++.+++..+..-..-|..-| ..+-|- -..|++..|.++|++-. +|+...|++.|+.=.+-+..+.|..+|++
T Consensus 123 vNhARNv~dRAvt~lPRVdqlWy-KY~ymE--E~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYer 199 (677)
T KOG1915|consen 123 VNHARNVWDRAVTILPRVDQLWY-KYIYME--EMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYER 199 (677)
T ss_pred HhHHHHHHHHHHHhcchHHHHHH-HHHHHH--HHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34456677766654433344333 333344 56688888888888754 68888899888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---C
Q 003457 106 MRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKS-GL-DLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR---T 180 (818)
Q Consensus 106 m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~-g~-~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~---d 180 (818)
.+- ++|+..+|....+-=.+.|+...+..+|..+++. |- ..+...+.+....-.++..++.|.-+|+-..+. +
T Consensus 200 fV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 200 FVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred Hhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 876 5688888888888778888888888888887764 21 112334555555555677788888777655432 1
Q ss_pred --HHHHHHHHHHHHHcCChHHHHH--------HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc
Q 003457 181 --LNVWTTMISGYAQSFRANEALM--------LFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMG 250 (818)
Q Consensus 181 --~~~~~~Li~~~~~~g~~~~A~~--------l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~ 250 (818)
...|..+...--+-|+-..... -|++++..+ +-|-.+|--.++.-...|+.+...++|++++..- +|-
T Consensus 278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~ 355 (677)
T KOG1915|consen 278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPA 355 (677)
T ss_pred cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-Cch
Confidence 2234444333333344333222 234444443 5677778777887778899999999999998763 442
Q ss_pred H-------HHHHHH---HHHHHhCCCHHHHHHHHhhCCC--C-Chh----hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003457 251 A-------ILGTAL---VHMYTKNGALAKAKALFDSMPE--R-NIA----TWNAMISGLASHGHAEEALDLFRKLEKEQI 313 (818)
Q Consensus 251 ~-------~~~~~L---i~~~~~~g~~~~A~~~f~~m~~--~-d~~----~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 313 (818)
. .+|.-+ +-.-....+.+.+.++|+...+ | ... .|.....--.++.+...|.+++...+ |.
T Consensus 356 ~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~ 433 (677)
T KOG1915|consen 356 SEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GK 433 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--cc
Confidence 1 111111 1112356788888888887765 2 222 34444445567788999998888766 45
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCC----HHHHH
Q 003457 314 VPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPD----VVMWG 389 (818)
Q Consensus 314 ~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd----~~~~~ 389 (818)
.|-..+|...|..-.+.++++.+..+|++.++- -+-|..+|......=...|+.+.|..+|+-+...|. ...|.
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk 511 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK 511 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH
Confidence 788888988898888999999999999998863 445678888888888889999999999998865553 45677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 390 ALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 390 ~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
+.|+--...|.+++|..+|++.++..+. ...|...+..-.
T Consensus 512 aYIdFEi~~~E~ekaR~LYerlL~rt~h-~kvWisFA~fe~ 551 (677)
T KOG1915|consen 512 AYIDFEIEEGEFEKARALYERLLDRTQH-VKVWISFAKFEA 551 (677)
T ss_pred HhhhhhhhcchHHHHHHHHHHHHHhccc-chHHHhHHHHhc
Confidence 7777667889999999999999988776 447776665544
No 55
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.2e-08 Score=106.63 Aligned_cols=344 Identities=13% Similarity=0.137 Sum_probs=194.8
Q ss_pred hHHHHHHHHhcCc---hHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC----CCCHHHHHHHHH
Q 003457 16 PPLSLLADKCKSM---HQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQ----SPNHFMWNTLIR 88 (818)
Q Consensus 16 ~tl~~ll~~c~~~---~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~----~p~~~~yn~Li~ 88 (818)
.|++.++.+.+.. +.++.++........+.+..++|.+|.+-.|.+- .++..+|. .||..++|++++
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~------K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG------KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc------HHHHHHHHHhhcCCchHhHHHHHH
Confidence 4666666664433 3345555555555566677777777766644332 33444443 577777888877
Q ss_pred HHHhCCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHH-HHHHHHHHHHc----CCCC----CHHHHHH
Q 003457 89 AQASSLNPDK----AIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNC-CKQIHTHVSKS----GLDL----DLHVVNC 155 (818)
Q Consensus 89 ~~~~~g~~~~----Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~-A~~~~~~m~~~----g~~p----~~~~~~~ 155 (818)
+..+.|+++. |++++.+|++-|+.|...+|..+|..+.+.++..+ +..++.++... .++| |...+..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 7777776653 45666777777777777777777777777666543 33333333221 1211 3445666
Q ss_pred HHHHHHhCCChHHHHHHHHHhhcC--------CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003457 156 LVRCYSVSSDLNNARQVFDEIRNR--------TL---NVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLS 224 (818)
Q Consensus 156 Li~~y~~~g~~~~A~~l~~~m~~~--------d~---~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 224 (818)
.+..|.+..+.+-|.++-.-+... +. .-|..+....++....+.-+..|+.|.-.-+-|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 667777777777777765554431 11 1244555566666677777777777766656677777777777
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHH--cCCHHHHH
Q 003457 225 ACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLAS--HGHAEEAL 302 (818)
Q Consensus 225 ~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~--~g~~~~A~ 302 (818)
+....++++-..+++..++..|.........-++..+++.+ ..|+...-..+-....+ ..-.+...
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776653333332222222222221 01111111111111111 11111122
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHH---HHHHHHHHcCCHHHHHHHHHHc
Q 003457 303 DLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYG---CMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 303 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~---~Li~~~~~~g~~~~A~~~~~~m 379 (818)
..-.+|.+.. -.....+.++..+.+.|+.++|.+++..+.+...--|-....+ -+++.-.+.+....|..+++-|
T Consensus 510 ~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 510 SQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2233444443 3344566666677788888888888887755433333333344 4455556677788888888777
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=6.3e-09 Score=108.71 Aligned_cols=278 Identities=15% Similarity=0.062 Sum_probs=156.3
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CHHHHHHHHHHHHHcCChHHHHHH
Q 003457 128 VRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR----TLNVWTTMISGYAQSFRANEALML 203 (818)
Q Consensus 128 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~----d~~~~~~Li~~~~~~g~~~~A~~l 203 (818)
.|++.+|++...+-.+++..| ...|..-+.+--+.||.+.|-+++.+..+. +...+-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 356666666655555554332 223333444455556666666666555543 222344455555566666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHhCCCHHHHHHHHhh
Q 003457 204 FDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGA-------ILGTALVHMYTKNGALAKAKALFDS 276 (818)
Q Consensus 204 ~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~-------~~~~~Li~~~~~~g~~~~A~~~f~~ 276 (818)
+.++.+.+ +-+.........+|.+.|++.....++..+.+.+.-.+. .++..+++=....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66655553 334444555556666666666666666666665543332 2333344433333444444445555
Q ss_pred CCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCH
Q 003457 277 MPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKI 353 (818)
Q Consensus 277 m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~ 353 (818)
... .++..-.+++.-+.+.|+.++|.++.++..+++..|. . ...-.+.+.++.+.-++..++..+. .+.++
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQ--HPEDP 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHh--CCCCh
Confidence 543 3555666666677777777777777777776655544 1 1122345556666666666665554 23333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 354 EHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 354 ~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
..+..|...|.+.+.|.+|.+.|+.. ..+|+..+|+-+.+++.+.|+.++|.+++++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 56666666677777777777777655 4556667777777777777777777776666553
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=6.7e-10 Score=113.55 Aligned_cols=195 Identities=15% Similarity=0.034 Sum_probs=156.7
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 250 GAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSA 326 (818)
Q Consensus 250 ~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 326 (818)
....+..+...|.+.|++++|.+.++++.+ .+...+..+...|...|++++|.+.+++..+.... +...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 345666777788888888888888877654 34567777888888899999999999988876433 55677778888
Q ss_pred HHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 003457 327 CCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVA 404 (818)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A 404 (818)
+...|++++|.+.++++.+....+.....+..+...+...|++++|.+.|++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 88999999999999998764222334567777888899999999999999887 2334 467788888899999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 405 ERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 405 ~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.+.++++++..|+++..+..++.++.+.|+.++|.++.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999988888888889999999999999999876655
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=5.8e-09 Score=110.87 Aligned_cols=335 Identities=11% Similarity=0.037 Sum_probs=214.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 83 WNTLIRAQASSLNPDKAIFLYMNMRRTGFAPN-QHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYS 161 (818)
Q Consensus 83 yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~ 161 (818)
+.....-|.++|++++|+++|.+.++ ..|| ...|......|...|+++++.+.-.+.++.++. -...+..-.+++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 44455667788899999999999887 5667 778888888888899999888887777765322 2335555666777
Q ss_pred hCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHH-cC--CCCCHHHHHHHHHHHHhc-
Q 003457 162 VSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRA--------NEALMLFDQMLM-EG--FEPNSVTLASVLSACAQS- 229 (818)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~--------~~A~~l~~~m~~-~g--~~pd~~t~~~ll~~~~~~- 229 (818)
..|++++|+.-..-+ .+...+....-. ..|..-.++-.+ .+ +-|+.....+....+...
T Consensus 195 ~lg~~~eal~D~tv~---------ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVL---------CILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHhhhHH---------HHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 777877775432211 111111111111 122222222222 12 234443333333322110
Q ss_pred -----CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC-CCHHHHHHHHhhCC-------C---CC------hhhHHH
Q 003457 230 -----GCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKN-GALAKAKALFDSMP-------E---RN------IATWNA 287 (818)
Q Consensus 230 -----g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~-g~~~~A~~~f~~m~-------~---~d------~~~~~~ 287 (818)
...+++...+ -..+=..+... ..+.+|...+.+-. . .| ..+.+.
T Consensus 266 ~~~~~~~~~ksDa~l--------------~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 266 KPLFDNKSDKSDAAL--------------AEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred cccccCCCccchhhH--------------HHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 0011111111 11111111110 12333333322211 1 11 122222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003457 288 MISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCG 367 (818)
Q Consensus 288 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g 367 (818)
-..-+.-.|+.-.|..-|+..++....++.. |.-+..+|....+.++..+.|.+..+. .+-|..+|..-.+++.-.+
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHH
Confidence 2223455689999999999999876655442 666777899999999999999998864 3446778888888899999
Q ss_pred CHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 368 KVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 368 ~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
++++|..-|++. ...| +...|-.+.-+..+.+++++++..|+++.+..|+-++.|+..+.++..+++++.|.+.++..
T Consensus 409 q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 409 QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999999998 4556 46677777777778999999999999999999999999999999999999999999988777
Q ss_pred H
Q 003457 446 V 446 (818)
Q Consensus 446 ~ 446 (818)
+
T Consensus 489 i 489 (606)
T KOG0547|consen 489 I 489 (606)
T ss_pred H
Confidence 4
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.26 E-value=1.4e-09 Score=121.23 Aligned_cols=229 Identities=18% Similarity=0.176 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc-----C-CCCcH-HHHHHHHHHHHhCCCHHHHHHHHhhCCC-------C--
Q 003457 217 VTLASVLSACAQSGCLELGEKVHVFVKMR-----G-FEMGA-ILGTALVHMYTKNGALAKAKALFDSMPE-------R-- 280 (818)
Q Consensus 217 ~t~~~ll~~~~~~g~~~~A~~i~~~~~~~-----g-~~~~~-~~~~~Li~~~~~~g~~~~A~~~f~~m~~-------~-- 280 (818)
.+...+...|...|+++.|...+++.++. | ..+.. ...+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777788888888888887777664 1 12222 2333477788888999888888887763 1
Q ss_pred --ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC--C
Q 003457 281 --NIATWNAMISGLASHGHAEEALDLFRKLEKE-----QIV-PND-ITFVGVLSACCHAGFIDVGRQIFGSMKRVYG--I 349 (818)
Q Consensus 281 --d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~-----g~~-pd~-~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g--~ 349 (818)
-..+++.|..+|.+.|++++|..++++..+. +.. |.. ..++.+...|...+++++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2347888888999999999998888876531 222 222 3456677889999999999999988766532 2
Q ss_pred CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHcC-------C--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-
Q 003457 350 EPK----IEHYGCMVDLLGRCGKVLEAEELIKRMV-------W--KPD-VVMWGALLAACKNHGNIEVAERVVKEIIAL- 414 (818)
Q Consensus 350 ~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~-------~--~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~- 414 (818)
.++ ..+++.|...|.++|++++|+++|+++. . .+. ...++.|...|.+.+++++|.++|++...+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 4678999999999999999999999882 1 122 456788899999999999999999887663
Q ss_pred ---CCCC---cchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 415 ---EPNN---HGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 415 ---~P~~---~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+|++ ...|.+|+.+|.+.|++++|+++....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4554 467889999999999999999987666
No 60
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=2.3e-10 Score=115.51 Aligned_cols=221 Identities=11% Similarity=0.040 Sum_probs=138.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHHcC
Q 003457 220 ASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--R-NIATWNAMISGLASHG 296 (818)
Q Consensus 220 ~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~-d~~~~~~Li~~~~~~g 296 (818)
..+.++|.+.|.+.+|++.++..++. .+-+.+|..|...|.+..+...|+.+|.+-.+ | |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 34445555555555555555544444 23334444455555555555555555554443 2 2222233444555556
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 297 HAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELI 376 (818)
Q Consensus 297 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 376 (818)
+.++|.++|++..+.. ..+......+...|.-.++.+.|+.+|+++.+. |. -++..|+.+.-+|...++++-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 6666666666665542 224444445555555666666666666666654 33 34556666666666666666666666
Q ss_pred HHcC---CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 377 KRMV---WKPD--VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 377 ~~m~---~~pd--~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+++. ..|+ ...|.++.......|++..|.+.|+-++..+|++.+++++|+.+-.+.|+.++|..++...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 6652 2233 5678888888888999999999999999999999999999999999999999999888776
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=1.9e-08 Score=105.12 Aligned_cols=279 Identities=13% Similarity=0.099 Sum_probs=211.3
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 003457 93 SLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQV 172 (818)
Q Consensus 93 ~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l 172 (818)
.|++.+|..+..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.++.+....++.....+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 68899999988887665444 33456666777888899999999999888875566777888888888899999999888
Q ss_pred HHHhhc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCChhHHHHHHHHH
Q 003457 173 FDEIRN---RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSV-------TLASVLSACAQSGCLELGEKVHVFV 242 (818)
Q Consensus 173 ~~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~ll~~~~~~g~~~~A~~i~~~~ 242 (818)
++++.+ +++.......++|.+.|++.+...++.+|.+.+.--|.. +|..++.-+...+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 877654 477788889999999999999999999999888655543 4555555554444444444455544
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003457 243 KMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPER--NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITF 320 (818)
Q Consensus 243 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~--d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 320 (818)
-+. ...++.+-..++.-+.++|+.++|.++..+..++ |.. -...-.+.+-++.+.-++..++-.+.. +-++..+
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~ 331 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLL 331 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHH
Confidence 433 3455667778888899999999999988877763 333 222234556677777777777766542 2245677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 321 VGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 321 ~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
..|...|.+.+.+.+|...|+..++ ..|+..+|+.+.++|.+.|+.++|.+++++.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8889999999999999999998774 6899999999999999999999999998876
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=8.3e-09 Score=111.80 Aligned_cols=280 Identities=10% Similarity=0.022 Sum_probs=221.2
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003457 146 LDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLN---VWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASV 222 (818)
Q Consensus 146 ~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~---~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 222 (818)
..-+........+-+....++.+..++++.+.+.|+. .+-.-|..+.+.|+..+-..+=.+|.+. .|-...+|-.+
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 3445566666777788899999999999999886554 5666677888889988888888888876 36677899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHH
Q 003457 223 LSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAE 299 (818)
Q Consensus 223 l~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~ 299 (818)
.--|...|+..+|+++|.+....+ +.-...|-.+...|+-.+.-|+|...|....+ .....+.-+..-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 988888999999999999988764 33346777889999999999999888876554 12223333556788899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-CC----CCHHHHHHHHHHHHHcCCHHHHHH
Q 003457 300 EALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYG-IE----PKIEHYGCMVDLLGRCGKVLEAEE 374 (818)
Q Consensus 300 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g-~~----p~~~~~~~Li~~~~~~g~~~~A~~ 374 (818)
.|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+.....-. .. -...+++.|..+|.+++++++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999988763 33677788887777788999999999998763210 11 135678999999999999999999
Q ss_pred HHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003457 375 LIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNM 428 (818)
Q Consensus 375 ~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~ 428 (818)
.|++.. ...|..++.++.-.|...|+++.|++.|.+++.++|++..+-.+|..+
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 999983 345789999999999999999999999999999999976665555533
No 63
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.6e-07 Score=98.00 Aligned_cols=259 Identities=10% Similarity=0.038 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 003457 180 TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSV-TLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALV 258 (818)
Q Consensus 180 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li 258 (818)
|......+...+...|+.++|+..|++.+.. .|+.. ....-.-.+.+.|+.+....+...+....- -....+..-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhh
Confidence 6667777888888888888888888887654 33322 122222233566777777776666655421 1111222223
Q ss_pred HHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003457 259 HMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDV 335 (818)
Q Consensus 259 ~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 335 (818)
......+++..|+.+-++..+ +++..+-.-...+.+.+++++|.-.|+..+... +-+...|..|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 334455677788777777665 345555555567788888888888888887652 1256788888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 336 GRQIFGSMKRVYGIEPKIEHYGCMV-DLLGR-CGKVLEAEELIKRM-VWKPD-VVMWGALLAACKNHGNIEVAERVVKEI 411 (818)
Q Consensus 336 A~~~~~~m~~~~g~~p~~~~~~~Li-~~~~~-~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~ 411 (818)
|...-+...+. ++-+..+...+. ..+.. -.--++|.+++++. ..+|+ ....+.+...|...|+.+.++.++++.
T Consensus 387 A~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 387 ANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 88777776654 445555555442 22222 22346788888876 56676 456677777788888888888888888
Q ss_pred HhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 412 IALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 412 ~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+...|| ...++.|++++...+.+.+|++.+...
T Consensus 465 L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 465 LIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred Hhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 888888 677888888888888888888866655
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=6.5e-09 Score=121.17 Aligned_cols=255 Identities=13% Similarity=0.011 Sum_probs=174.5
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHc
Q 003457 180 TLNVWTTMISGYAQ-----SFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQ---------SGCLELGEKVHVFVKMR 245 (818)
Q Consensus 180 d~~~~~~Li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~---------~g~~~~A~~i~~~~~~~ 245 (818)
+...|...+++... .+.+++|+++|++.++.. +-+...|..+..++.. .+++++|...++++++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45556666655322 134678999999988763 3344555555554432 23478899999998887
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003457 246 GFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVG 322 (818)
Q Consensus 246 g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 322 (818)
+ +.+...+..+..++...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+..+. +...+..
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 5 55677788888888899999999999988775 34567888888899999999999999998887443 2223333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCCH-HHHHHHHHHHHHcC
Q 003457 323 VLSACCHAGFIDVGRQIFGSMKRVYGIEP-KIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPDV-VMWGALLAACKNHG 399 (818)
Q Consensus 323 ll~a~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd~-~~~~~Li~a~~~~g 399 (818)
++..+...|++++|...++++.+. .+| +...+..+..+|...|++++|.+.++++. ..|+. ...+.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 444566688899999998887764 234 45567778888889999999999998873 34443 34455555566666
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHH
Q 003457 400 NIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 400 ~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l 441 (818)
++|...++++++..-........+..+|.-.|+-+.+...
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH
Confidence 4777777776653322222233366667777777776665
No 65
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=9.4e-09 Score=104.99 Aligned_cols=199 Identities=15% Similarity=0.107 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 003457 182 NVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMY 261 (818)
Q Consensus 182 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~ 261 (818)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~--------- 100 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGD--------- 100 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH---------
Confidence 355666666666666666666666665542 3334455555555556666666666666555543 22333
Q ss_pred HhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 262 TKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVP-NDITFVGVLSACCHAGFIDVGRQIF 340 (818)
Q Consensus 262 ~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~~~ 340 (818)
.+..+...+...|++++|...++++.+....+ ....+..+..++...|++++|.+.+
T Consensus 101 ----------------------~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 101 ----------------------VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred ----------------------HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444445555555555555555554432111 2234444555666666666666666
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003457 341 GSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-W-KPDVVMWGALLAACKNHGNIEVAERVVKEIIALE 415 (818)
Q Consensus 341 ~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~-~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~ 415 (818)
++..+. .+.+...+..+...+...|++++|.+.++++. . ..+...+..++..+...|+.++|..+.+.+.+..
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 666553 23345556666666666667776666666652 1 2234555555566666677777776666655543
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=8e-08 Score=100.31 Aligned_cols=306 Identities=10% Similarity=0.020 Sum_probs=225.9
Q ss_pred CCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHH---HH
Q 003457 113 PNQHTFTFVLKACSNV--RSLNCCKQIHTHVSKS-GLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVW---TT 186 (818)
Q Consensus 113 pd~~ty~~ll~~~~~~--g~~~~A~~~~~~m~~~-g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~---~~ 186 (818)
|+..+....+.++++. ++...+.+.+-.+.+. -++.|......+.+++...|+.++|+..|++...-|+.+. ..
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 3333444445544432 3334444444433333 3566788889999999999999999999999876655432 23
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Q 003457 187 MISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGA 266 (818)
Q Consensus 187 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~ 266 (818)
....+.+.|++++...+...+.... .-....|..-+......++++.|..+-++.++.+ +.+...+-.-..++...++
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 3344567889988888888876542 2233344444445556788999999998888775 4455556556678889999
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHH-cCCHHHHHHHHH
Q 003457 267 LAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVL-SACCH-AGFIDVGRQIFG 341 (818)
Q Consensus 267 ~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~~~-~g~~~~A~~~~~ 341 (818)
.++|.-.|+.... -+..+|.-|+.+|...|++.+|..+-+...+. +..+..++..+. ..|.. ..--++|..+++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 9999999987664 47889999999999999999999888876654 344666766663 33433 334678999998
Q ss_pred HHHHHhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003457 342 SMKRVYGIEPK-IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 342 ~m~~~~g~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~ 419 (818)
+..+ +.|+ ....+.+...+...|+.++++.++++. ...||....+.|.+.+.....+++|++.|..+++++|++.
T Consensus 429 k~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 429 KSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 8774 4565 567788889999999999999999988 5679999999999999999999999999999999999966
Q ss_pred chHHH
Q 003457 420 GVYVV 424 (818)
Q Consensus 420 ~~y~~ 424 (818)
.+..-
T Consensus 506 ~sl~G 510 (564)
T KOG1174|consen 506 RTLRG 510 (564)
T ss_pred HHHHH
Confidence 54443
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=6.3e-09 Score=121.24 Aligned_cols=244 Identities=11% Similarity=0.002 Sum_probs=173.9
Q ss_pred CChHHHHHHHHHhhcCC---HHHHHHHHHHHHH---------cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 003457 164 SDLNNARQVFDEIRNRT---LNVWTTMISGYAQ---------SFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGC 231 (818)
Q Consensus 164 g~~~~A~~l~~~m~~~d---~~~~~~Li~~~~~---------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~ 231 (818)
+++++|.++|++..+.| ...|..+..+|.. .+++++|...++++++.. +-+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 34678888898887653 3456666555442 244789999999998875 5567778788888888999
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CC-hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 232 LELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--RN-IATWNAMISGLASHGHAEEALDLFRKL 308 (818)
Q Consensus 232 ~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d-~~~~~~Li~~~~~~g~~~~A~~l~~~m 308 (818)
+++|...++++++.+ +.+...+..+..+|...|++++|...+++..+ |+ ...+..++..+...|++++|+..++++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999886 55677788889999999999999999998876 32 223444555577789999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCCC
Q 003457 309 EKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV----WKPD 384 (818)
Q Consensus 309 ~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~pd 384 (818)
.+...+-+...+..+..++...|++++|.+.++++... .+.+....+.+...|...| ++|...++++. ..+.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 87632224555677788888999999999999887653 2333455566666677777 47777666652 2333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003457 385 VVMWGALLAACKNHGNIEVAERVVKEIIALEP 416 (818)
Q Consensus 385 ~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P 416 (818)
...+..+ .+.-.|+.+.+..+ +++.+.+.
T Consensus 509 ~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 509 NPGLLPL--VLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred CchHHHH--HHHHHhhhHHHHHH-HHhhccch
Confidence 3333333 34567777777666 77766543
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.13 E-value=2.7e-08 Score=106.43 Aligned_cols=233 Identities=15% Similarity=-0.014 Sum_probs=149.2
Q ss_pred ChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 003457 196 RANEALMLFDQMLMEG-FEPN--SVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKA 272 (818)
Q Consensus 196 ~~~~A~~l~~~m~~~g-~~pd--~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 272 (818)
..+.++..+.+++... ..|+ ...|..+...+...|+.++|...|+++++.. +.+...++.+...|...|++++|.+
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555665655432 1111 2345555666677777777777777777664 4456777777777777788888877
Q ss_pred HHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Q 003457 273 LFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGI 349 (818)
Q Consensus 273 ~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~ 349 (818)
.|++..+ .+..+|..+...+...|++++|++.|++..+.. |+..........+...++.++|...+++.... .
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK--L 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--C
Confidence 7777754 245677778888888888888888888888763 33322222222344567788888888765543 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHH--HHHHHHHc-CC----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCcc
Q 003457 350 EPKIEHYGCMVDLLGRCGKVLE--AEELIKRM-VW----KP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEP-NNHG 420 (818)
Q Consensus 350 ~p~~~~~~~Li~~~~~~g~~~~--A~~~~~~m-~~----~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P-~~~~ 420 (818)
+++...+ .+. +...|+..+ +++.+.+. .. .| ....|..+...+.+.|++++|+..|+++++.+| +..+
T Consensus 196 ~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e 272 (296)
T PRK11189 196 DKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVE 272 (296)
T ss_pred CccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHH
Confidence 3332222 233 233444433 33333322 11 12 246789999999999999999999999999996 7778
Q ss_pred hHHHHHHHHHHhhchH
Q 003457 421 VYVVLSNMYAEAESMK 436 (818)
Q Consensus 421 ~y~~L~~~l~~~G~~~ 436 (818)
+...++.+....++.+
T Consensus 273 ~~~~~~e~~~~~~~~~ 288 (296)
T PRK11189 273 HRYALLELALLGQDQD 288 (296)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 8777777766655543
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=2.4e-08 Score=111.63 Aligned_cols=231 Identities=19% Similarity=0.158 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHc-----CC--C
Q 003457 183 VWTTMISGYAQSFRANEALMLFDQMLME-----G-FEPNSVTL-ASVLSACAQSGCLELGEKVHVFVKMR-----GF--E 248 (818)
Q Consensus 183 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~-----g-~~pd~~t~-~~ll~~~~~~g~~~~A~~i~~~~~~~-----g~--~ 248 (818)
+...+...|...|+++.|..++++.++. | ..|...+. ..+...|...+++++|..+|+++... |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444777788888888888888776554 1 12333333 23556777888888888888887763 21 1
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC----------CCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC
Q 003457 249 MGAILGTALVHMYTKNGALAKAKALFDSMPE----------RNI-ATWNAMISGLASHGHAEEALDLFRKLEKE---QIV 314 (818)
Q Consensus 249 ~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~----------~d~-~~~~~Li~~~~~~g~~~~A~~l~~~m~~~---g~~ 314 (818)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..+...+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1234666777788888888888777766543 222 24666777888999999999999876542 122
Q ss_pred CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----C-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC----
Q 003457 315 PN----DITFVGVLSACCHAGFIDVGRQIFGSMKRVY----G-IEP-KIEHYGCMVDLLGRCGKVLEAEELIKRMV---- 380 (818)
Q Consensus 315 pd----~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~----g-~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~---- 380 (818)
++ ..+++.|...|.+.|++++|.++|++++... + ..+ ....++.|...|.+.+++.+|.++|.+..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 3578899999999999999999999987652 1 111 24567889999999999999999998762
Q ss_pred ----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 381 ----WKPD-VVMWGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 381 ----~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
..|+ ..+|..|...|...|++++|+++.+++..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3355 46899999999999999999999988774
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.09 E-value=9.5e-09 Score=109.90 Aligned_cols=209 Identities=13% Similarity=0.069 Sum_probs=152.4
Q ss_pred CChhHHHHHHHHHHHcC-CC--CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHH
Q 003457 230 GCLELGEKVHVFVKMRG-FE--MGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALD 303 (818)
Q Consensus 230 g~~~~A~~i~~~~~~~g-~~--~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~ 303 (818)
++.+.+...+.+++... .. .....+..+...|.+.|++++|...|++..+ .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566777777777542 11 2245677888899999999999999998875 467899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--C
Q 003457 304 LFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--W 381 (818)
Q Consensus 304 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~ 381 (818)
.|++..+..+. +..++..+..++...|++++|.+.+++..+. .|+..........+...+++++|.+.|++.. .
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999986433 4677888888999999999999999998875 4433222222223456788999999997652 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 382 KPDVVMWGALLAACKNHGNIEVAERVVKEII-------ALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 382 ~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~-------~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
.|+...+ . ......|+..++ +.++.+. ++.|+..++|..++.++.+.|++++|+..++...
T Consensus 196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3333222 2 223345555443 2333333 5567778899999999999999999999877663
No 71
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.07 E-value=1.7e-06 Score=95.68 Aligned_cols=376 Identities=14% Similarity=0.076 Sum_probs=246.6
Q ss_pred hhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHH
Q 003457 59 LSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCK 135 (818)
Q Consensus 59 ~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~ 135 (818)
+...|+.++|........+ .+.++|..+.-.+....++++|+.+|......+.. |...+.-+.-.=++.++++...
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHH
Confidence 3578999999999887764 56789999988888899999999999999885333 5567777776777888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----CHHHHH------HHHHHHHHcCChHHHHHHH
Q 003457 136 QIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR-----TLNVWT------TMISGYAQSFRANEALMLF 204 (818)
Q Consensus 136 ~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~-----d~~~~~------~Li~~~~~~g~~~~A~~l~ 204 (818)
..-.++.+..+ .....|..++.++.-.|+...|..++++..+. +...+. -......+.|..++|++.+
T Consensus 130 ~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 88877777532 24557788888888899999999998887642 222222 2234567788888888887
Q ss_pred HHHHHcCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHH-HHHhhCCC--C
Q 003457 205 DQMLMEGFEPNSVTL-ASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAK-ALFDSMPE--R 280 (818)
Q Consensus 205 ~~m~~~g~~pd~~t~-~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~-~~f~~m~~--~ 280 (818)
..-... ..|...+ ..-...+.+.+++++|..++..++..+ +.+...|..+..++.+-.+.-++. .+|....+ +
T Consensus 209 ~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~ 285 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP 285 (700)
T ss_pred HhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc
Confidence 765432 2344443 234466778999999999999999884 334444445555554333434444 66666554 1
Q ss_pred ChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hC----------
Q 003457 281 NIATWNAMISGLASHGH-AEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRV-YG---------- 348 (818)
Q Consensus 281 d~~~~~~Li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~-~g---------- 348 (818)
-...-..+-.......+ .+..-.+++.+.+.|+++- +..+...|-.....+--+++.-.+... .+
T Consensus 286 r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 286 RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence 11111111111112222 3334456677777877653 333333333222211111111111111 01
Q ss_pred --CCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 003457 349 --IEPKIEHY--GCMVDLLGRCGKVLEAEELIKRMV-WKPD-VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 349 --~~p~~~~~--~~Li~~~~~~g~~~~A~~~~~~m~-~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y 422 (818)
-+|....| ..++..|-+.|+++.|+..++.+. ..|. +..|..-.+.+.+.|++++|..+++++.+++-.|.-.-
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN 442 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN 442 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence 14554444 467788889999999999999884 4465 45666677888999999999999999999886545444
Q ss_pred HHHHHHHHHhhchHHHHHHH
Q 003457 423 VVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 423 ~~L~~~l~~~G~~~eA~~l~ 442 (818)
..-+....++++.++|.++.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~ 462 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVL 462 (700)
T ss_pred HHHHHHHHHccccHHHHHHH
Confidence 46778888999999998854
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=9e-09 Score=112.11 Aligned_cols=214 Identities=16% Similarity=0.121 Sum_probs=173.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHH
Q 003457 226 CAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEAL 302 (818)
Q Consensus 226 ~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~ 302 (818)
+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+ .|......|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 457888999999999999886 66788899999999999999999999988876 46678888888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHH-----------HHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH
Q 003457 303 DLFRKLEKEQIVPNDITFVGVL-----------SACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLE 371 (818)
Q Consensus 303 ~l~~~m~~~g~~pd~~t~~~ll-----------~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~ 371 (818)
++++.-++..++ |..+. ..+.....+....++|-.+....+..+|..++..|.-.|.-.|++++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999987664321 10010 01112223445566666666654655788888889888999999999
Q ss_pred HHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHH-HHHH
Q 003457 372 AEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEI-LLVQ 445 (818)
Q Consensus 372 A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l-~~~~ 445 (818)
|...|+.+ ..+| |..+||.|...++...+.++|+..|++++++.|...++.++|+-.|...|.|+||.+. +.++
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999998 5667 6889999999999999999999999999999999999999999999999999999994 4444
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.00 E-value=9.1e-07 Score=99.55 Aligned_cols=362 Identities=13% Similarity=0.021 Sum_probs=233.1
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 003457 78 PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDL-DLHVVNCL 156 (818)
Q Consensus 78 p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~L 156 (818)
.|...|..|-=++...|+++.+.+.|++....-+. ..+.|..+...+...|.-..|..+++........| +...+...
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 57778888888888899999999999988764333 66788888888888888889999988876654334 34444444
Q ss_pred HHHHH-hCCChHHHHHHHHHhhc--------CCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHcCCCCCH
Q 003457 157 VRCYS-VSSDLNNARQVFDEIRN--------RTLNVWTTMISGYAQS-----------FRANEALMLFDQMLMEGFEPNS 216 (818)
Q Consensus 157 i~~y~-~~g~~~~A~~l~~~m~~--------~d~~~~~~Li~~~~~~-----------g~~~~A~~l~~~m~~~g~~pd~ 216 (818)
-..|. +.+..++++++-.++.. .....|..+.-+|... ....++++.+++..+.+ +-|.
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp 478 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDP 478 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCc
Confidence 44444 35666666665555443 1333455555544332 22356778888887664 2333
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHH
Q 003457 217 VTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPER---NIATWNAMISGLA 293 (818)
Q Consensus 217 ~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~---d~~~~~~Li~~~~ 293 (818)
.....+.--|+..++++.|.+..++..+.+...+...+..|+-.+...+++.+|+.+.+...+. |......-+..-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 3333344456677889999999999999866778888888888899999999999998876642 2221122222233
Q ss_pred HcCCHHHHHHHHHHHHHc---------------------CC-----CC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003457 294 SHGHAEEALDLFRKLEKE---------------------QI-----VP-N-DITFVGVLSACCHAGFIDVGRQIFGSMKR 345 (818)
Q Consensus 294 ~~g~~~~A~~l~~~m~~~---------------------g~-----~p-d-~~t~~~ll~a~~~~g~~~~A~~~~~~m~~ 345 (818)
.-++.++++.....+... |. .| + ..++..+.......+....-...+..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~--- 635 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS--- 635 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc---
Confidence 356666666555544321 00 00 0 11121111111100000000000000
Q ss_pred HhCCC--CC------HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003457 346 VYGIE--PK------IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALE 415 (818)
Q Consensus 346 ~~g~~--p~------~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~ 415 (818)
.... |+ ...|......+.+.+..++|...+.++ +..| ....|......+...|+.++|.+.|..++.++
T Consensus 636 -s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld 714 (799)
T KOG4162|consen 636 -STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD 714 (799)
T ss_pred -ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 0111 12 235666777888999999999888777 3333 56777777788889999999999999999999
Q ss_pred CCCcchHHHHHHHHHHhhchHHHHH--HHHHH
Q 003457 416 PNNHGVYVVLSNMYAEAESMKMQLE--ILLVQ 445 (818)
Q Consensus 416 P~~~~~y~~L~~~l~~~G~~~eA~~--l~~~~ 445 (818)
|+++.....++.++.+.|+-.-|.. +...+
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~da 746 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDA 746 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH
Confidence 9999999999999999998777766 55554
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=3.1e-08 Score=100.35 Aligned_cols=236 Identities=14% Similarity=0.064 Sum_probs=202.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Q 003457 185 TTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKN 264 (818)
Q Consensus 185 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~ 264 (818)
+.|..+|.+.|.+.+|.+.|+..++. .|-..||..|-+.|.+..+.+.|..++.+-++. ++.++....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56889999999999999999998876 677788999999999999999999999998876 466777777788899999
Q ss_pred CCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003457 265 GALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFG 341 (818)
Q Consensus 265 g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~ 341 (818)
++.++|.++|+...+ .++++...+...|.-.++++-|+.+|++++..|.. +...|+.+.-+|...++++-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998876 35666777778899999999999999999999987 78889999999999999999999999
Q ss_pred HHHHHhCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 342 SMKRVYGIEPK--IEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 342 ~m~~~~g~~p~--~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
+.... ...|+ ..+|..+.......|++.-|.+.|+-.. ..+ +...+++|...-.+.|++++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98765 33344 5689999988899999999999999883 334 4788999998888999999999999999999998
Q ss_pred CcchHHHH
Q 003457 418 NHGVYVVL 425 (818)
Q Consensus 418 ~~~~y~~L 425 (818)
-.+...++
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 66554444
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=5.5e-06 Score=90.78 Aligned_cols=367 Identities=13% Similarity=0.125 Sum_probs=193.2
Q ss_pred hcCCCHHHHHHHHhhcCCCCHHHHHHH--HHHH--HhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChHHH
Q 003457 60 SSSGDLSYATRLFNSIQSPNHFMWNTL--IRAQ--ASSLNPDKAIFLYMNMRRTGFAPN-QHTFTFVLKACSNVRSLNCC 134 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~~p~~~~yn~L--i~~~--~~~g~~~~Al~lf~~m~~~g~~pd-~~ty~~ll~~~~~~g~~~~A 134 (818)
.+.+++++|+.+.+.-..- .+++.. =.+| .+.+..++|+..++ |..++ ..+...-...|.+.+++++|
T Consensus 57 Iq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydea 129 (652)
T KOG2376|consen 57 IQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEA 129 (652)
T ss_pred hhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHH
Confidence 6888888888766654321 122222 3333 36778888888877 22223 33555566677788888888
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003457 135 KQIHTHVSKSGLDL-DLHVVNCLVRCYSVSSDLNNARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLFDQMLME 210 (818)
Q Consensus 135 ~~~~~~m~~~g~~p-~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 210 (818)
..+|+++.+.+.+. +...-..++..- -.-.+. +.+..... +-..+......+...|++.+|+++++.....
T Consensus 130 ldiY~~L~kn~~dd~d~~~r~nl~a~~----a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 130 LDIYQHLAKNNSDDQDEERRANLLAVA----AALQVQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHH----HhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888887765331 111111111111 111111 22222222 2223333445566667777777777666221
Q ss_pred C-------------CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHH----HHHHHHHHH-----------
Q 003457 211 G-------------FEPNSVT-LASVLSACAQSGCLELGEKVHVFVKMRGFEMGAI----LGTALVHMY----------- 261 (818)
Q Consensus 211 g-------------~~pd~~t-~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~----~~~~Li~~~----------- 261 (818)
+ +.-+..+ -..+.-.+...|+.++|.++|...++... +|.. .-|.|+.+-
T Consensus 205 ~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l 283 (652)
T KOG2376|consen 205 CREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLL 283 (652)
T ss_pred HHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHH
Confidence 1 0000111 12233445566777777777776666542 2221 111111110
Q ss_pred ----------------------------------HhCCCHHHHHHHHhhCCCCC-hhhHHHHHHH-H-HHcCCHHHHHHH
Q 003457 262 ----------------------------------TKNGALAKAKALFDSMPERN-IATWNAMISG-L-ASHGHAEEALDL 304 (818)
Q Consensus 262 ----------------------------------~~~g~~~~A~~~f~~m~~~d-~~~~~~Li~~-~-~~~g~~~~A~~l 304 (818)
.-.+..+.+.++-..+.... ...+..++.. + ++...+.++.++
T Consensus 284 ~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~ 363 (652)
T KOG2376|consen 284 KSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIEL 363 (652)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 01112222333332222211 1122223222 2 222346677777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 305 FRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFG--------SMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELI 376 (818)
Q Consensus 305 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~--------~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 376 (818)
+...-+....-........+......|+++.|.+++. .+.+ +...+.+...+...|.+.++.+.|..++
T Consensus 364 L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl 440 (652)
T KOG2376|consen 364 LLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVL 440 (652)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHH
Confidence 7766655322223444455667778899999998888 3332 2333455566777777777766666666
Q ss_pred HHcC-----CCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHH
Q 003457 377 KRMV-----WKPDVV----MWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILL 443 (818)
Q Consensus 377 ~~m~-----~~pd~~----~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~ 443 (818)
+++. ..+... ++.-+...-.+.|+.++|..+++++++.+|++.+....++.+|++.. .+.|..+-+
T Consensus 441 ~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k 515 (652)
T KOG2376|consen 441 DSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSK 515 (652)
T ss_pred HHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhh
Confidence 6551 112222 23333333356799999999999999999998999999988887664 455555443
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=3.2e-08 Score=96.40 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=120.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLL 363 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~ 363 (818)
+...|.-.|.+.|++..|..-+++.++..+. +..++..+...|.+.|..+.|.+.|++.... -+.+..+.|....-+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHH
Confidence 4455667788888888888888888776322 4566777777788888888888888887754 344567777777778
Q ss_pred HHcCCHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHH
Q 003457 364 GRCGKVLEAEELIKRMVWKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQL 439 (818)
Q Consensus 364 ~~~g~~~~A~~~~~~m~~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~ 439 (818)
+.+|++++|...|+++...|+ ..+|.++.-+..+.|+.+.|.+.|++.++++|+.+.....++....+.|++-+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 888888888888888754443 5677777777778888888888888888888888888888888888888888887
Q ss_pred HHHHHH
Q 003457 440 EILLVQ 445 (818)
Q Consensus 440 ~l~~~~ 445 (818)
.+++..
T Consensus 194 ~~~~~~ 199 (250)
T COG3063 194 LYLERY 199 (250)
T ss_pred HHHHHH
Confidence 766554
No 77
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.98 E-value=2.1e-07 Score=105.53 Aligned_cols=419 Identities=14% Similarity=0.043 Sum_probs=207.8
Q ss_pred CCCCCCChhHHHHHHHHhcCchHH--HHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHH
Q 003457 8 LRQPPLPIPPLSLLADKCKSMHQL--KQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNT 85 (818)
Q Consensus 8 ~~~~~p~~~tl~~ll~~c~~~~~~--~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~ 85 (818)
..+..|+.+||..++..++.-++. ..++..|.-........+++.++.-. .+.++.+.+. +|...+|..
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh--~~And~Enpk-------ep~aDtyt~ 88 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASH--KEANDAENPK-------EPLADTYTN 88 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcc--cccccccCCC-------CCchhHHHH
Confidence 334455555555555555443332 12445554444444555555555444 4445544443 467778888
Q ss_pred HHHHHHhCCChhHHHHHHHH-HH-------HcCCCCCHHHHHH--------------HHHHHHccCChHHHHHHHHHHHH
Q 003457 86 LIRAQASSLNPDKAIFLYMN-MR-------RTGFAPNQHTFTF--------------VLKACSNVRSLNCCKQIHTHVSK 143 (818)
Q Consensus 86 Li~~~~~~g~~~~Al~lf~~-m~-------~~g~~pd~~ty~~--------------ll~~~~~~g~~~~A~~~~~~m~~ 143 (818)
|..+|.++|+... ++..++ |. ..|+.--..-+-. ++......|-++.+.+++..+-.
T Consensus 89 Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 8888888887654 222222 21 1122111111111 11111122233333333322111
Q ss_pred cCCCCCHHHHHHHHHHHHh-CCChHHHHHHHHHhhc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003457 144 SGLDLDLHVVNCLVRCYSV-SSDLNNARQVFDEIRN-RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLAS 221 (818)
Q Consensus 144 ~g~~p~~~~~~~Li~~y~~-~g~~~~A~~l~~~m~~-~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 221 (818)
.... ..... .++-+.. ...+++-........+ +++.+|.+.+..-...|+.+.|..++.+|++.|++.+.+-|-.
T Consensus 168 sa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 168 SAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred cccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 0000 00000 1221111 1223333333333333 6778888888888888999999999999998888888887776
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHH-----------hhCCC-----------
Q 003457 222 VLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALF-----------DSMPE----------- 279 (818)
Q Consensus 222 ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f-----------~~m~~----------- 279 (818)
|+-+ .++...++.+++-|...|+.|+..++.-.+..+.++|+...+.+.. ..+..
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~n 321 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQN 321 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHH
Confidence 6654 6777778888888888888888877776655555544322221111 00000
Q ss_pred ------------------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHHcCC------
Q 003457 280 ------------------RNIATWNAMISGLASHGHAEEALDLFRKLEKE--QIVP-NDITFVGVLSACCHAGF------ 332 (818)
Q Consensus 280 ------------------~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~p-d~~t~~~ll~a~~~~g~------ 332 (818)
.....|. +..-...+|+-++.+.+-..|..- ...+ +...|..++.-|.+.-+
T Consensus 322 l~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~ 400 (1088)
T KOG4318|consen 322 LRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSR 400 (1088)
T ss_pred HHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHH
Confidence 0111222 222223356666666666666431 1222 22334444433332211
Q ss_pred HHHHHHHHHH------------HHHHhCCCCC----------------------------HHHHHHHHHHHHHcCCHHHH
Q 003457 333 IDVGRQIFGS------------MKRVYGIEPK----------------------------IEHYGCMVDLLGRCGKVLEA 372 (818)
Q Consensus 333 ~~~A~~~~~~------------m~~~~g~~p~----------------------------~~~~~~Li~~~~~~g~~~~A 372 (818)
+..+.+.++. ... ...|| ...-+.++..+.+.-+..++
T Consensus 401 i~~~~qgls~~l~se~tp~vsell~--~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~ 478 (1088)
T KOG4318|consen 401 IYYAGQGLSLNLNSEDTPRVSELLE--NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKI 478 (1088)
T ss_pred HHHHHHHHHhhhchhhhHHHHHHHH--HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 000 01111 11223444444444444555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 373 EELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPN---NHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 373 ~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~---~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+..-++.....=...|..|++-+..+++.+.|..+.++....+-. +..-+..+.+++.|.+...+|..+.+.+
T Consensus 479 l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ 554 (1088)
T KOG4318|consen 479 LCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYED 554 (1088)
T ss_pred HHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 433333321111256777888888888888888888776543321 2345677888888888888888865443
No 78
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.98 E-value=3.8e-05 Score=84.86 Aligned_cols=395 Identities=15% Similarity=0.147 Sum_probs=251.5
Q ss_pred CCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc------CCCCCH
Q 003457 42 SRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRT------GFAPNQ 115 (818)
Q Consensus 42 g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~------g~~pd~ 115 (818)
-......+|...+.+. ...+-.+-+.+++++-.+-++..-+--|..+++.+++++|-+.+...... ..+.+.
T Consensus 133 pvtqH~rIW~lyl~Fv--~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~ 210 (835)
T KOG2047|consen 133 PVTQHDRIWDLYLKFV--ESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNH 210 (835)
T ss_pred chHhhccchHHHHHHH--HhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchh
Confidence 3445566777777766 67777778888888877766666777788888888888888887776532 123344
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHcCCC--CC--HHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----CHH-HHH
Q 003457 116 HTFTFVLKACSNVRSLNCCKQIHTHVSKSGLD--LD--LHVVNCLVRCYSVSSDLNNARQVFDEIRNR-----TLN-VWT 185 (818)
Q Consensus 116 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--p~--~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~-----d~~-~~~ 185 (818)
..|..+-...++.-+.-....+ +.+++.|+. +| ...|.+|.+.|.+.|++++|.++|++.... |-. .|+
T Consensus 211 qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd 289 (835)
T KOG2047|consen 211 QLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFD 289 (835)
T ss_pred hHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHH
Confidence 5666666655554333222221 222333322 22 347899999999999999999999987653 211 121
Q ss_pred -----------HHHHHHH--HcC------ChHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhcCChhHH
Q 003457 186 -----------TMISGYA--QSF------RANEALMLFDQMLMEG-----------FEPNSVTLASVLSACAQSGCLELG 235 (818)
Q Consensus 186 -----------~Li~~~~--~~g------~~~~A~~l~~~m~~~g-----------~~pd~~t~~~ll~~~~~~g~~~~A 235 (818)
..+. .. ..+ +.+-.+.-|+.+.+.+ -+-+..+|..-.. ...|+..+.
T Consensus 290 ~Ya~FEE~~~~~~me-~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~ 366 (835)
T KOG2047|consen 290 AYAQFEESCVAAKME-LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQ 366 (835)
T ss_pred HHHHHHHHHHHHHHh-hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHH
Confidence 1122 11 111 2233444555554432 1223334433333 234567777
Q ss_pred HHHHHHHHHcCCCC------cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHHcCCHHHHH
Q 003457 236 EKVHVFVKMRGFEM------GAILGTALVHMYTKNGALAKAKALFDSMPERN-------IATWNAMISGLASHGHAEEAL 302 (818)
Q Consensus 236 ~~i~~~~~~~g~~~------~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d-------~~~~~~Li~~~~~~g~~~~A~ 302 (818)
...|.++++.- .| -...+..+.+.|-..|+++.|..+|++..+-+ ..+|..-...=.++.+++.|+
T Consensus 367 i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al 445 (835)
T KOG2047|consen 367 INTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAAL 445 (835)
T ss_pred HHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 78888888751 22 23577889999999999999999999998732 246666666677889999999
Q ss_pred HHHHHHHHcCCC----------C-CH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003457 303 DLFRKLEKEQIV----------P-ND------ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR 365 (818)
Q Consensus 303 ~l~~~m~~~g~~----------p-d~------~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~ 365 (818)
.++++.....-. | .. ..|...+..-...|-++....+|++++.. .+ -++.........+..
T Consensus 446 ~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-ri-aTPqii~NyAmfLEe 523 (835)
T KOG2047|consen 446 KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RI-ATPQIIINYAMFLEE 523 (835)
T ss_pred HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hc-CCHHHHHHHHHHHHh
Confidence 999887542111 1 11 23334445555667888888999998875 22 234444444445677
Q ss_pred cCCHHHHHHHHHHcC--CC-CC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHHhhchH
Q 003457 366 CGKVLEAEELIKRMV--WK-PD-VVMWGALLAACKN---HGNIEVAERVVKEIIALEPNN--HGVYVVLSNMYAEAESMK 436 (818)
Q Consensus 366 ~g~~~~A~~~~~~m~--~~-pd-~~~~~~Li~a~~~---~g~~~~A~~~~~~~~~~~P~~--~~~y~~L~~~l~~~G~~~ 436 (818)
+.-++++.++|++-. .+ |+ ...|+..+.-+.+ ..+.+.|..+|+++++.-|.. ...|...+.+-.+-|.-.
T Consensus 524 h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 524 HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 888999999999873 33 55 3577777665543 236899999999999977642 234555566666778888
Q ss_pred HHHHHHHHH
Q 003457 437 MQLEILLVQ 445 (818)
Q Consensus 437 eA~~l~~~~ 445 (818)
.|+++++..
T Consensus 604 ~amsiyera 612 (835)
T KOG2047|consen 604 HAMSIYERA 612 (835)
T ss_pred HHHHHHHHH
Confidence 888877554
No 79
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.2e-06 Score=98.18 Aligned_cols=373 Identities=10% Similarity=0.080 Sum_probs=229.0
Q ss_pred CCCC-ChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc-C-------CC
Q 003457 42 SRIQ-DHFAASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRT-G-------FA 112 (818)
Q Consensus 42 g~~~-d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~-g-------~~ 112 (818)
|.+. |..+-.+++.+-.|..-|+++.|.+-.+.+ .+...|..|.+.|++.++.+-|.-++-.|... | .+
T Consensus 720 gle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 720 GLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CccccCHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 4443 778888888665558999999999888777 56678999999999999999988888877642 1 11
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC-HHHHHHHHHHH
Q 003457 113 PNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRT-LNVWTTMISGY 191 (818)
Q Consensus 113 pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d-~~~~~~Li~~~ 191 (818)
-+..+-..+.-.....|.+++|+.+|++.++. ..|=..|-..|.+++|.++-+.-.+-. ..+|.....-+
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL 868 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH
Confidence 12133333444456778888888888887764 234456777888888888765433221 23666666667
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 003457 192 AQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAK 271 (818)
Q Consensus 192 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 271 (818)
-..++.+.|++.|++... |--..+. |+.- ++...+++.+.+ .|...|.-....+-..|+++.|+
T Consensus 869 ear~Di~~AleyyEK~~~----hafev~r-mL~e-----~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGV----HAFEVFR-MLKE-----YPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred HhhccHHHHHHHHHhcCC----hHHHHHH-HHHh-----ChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHH
Confidence 777888888888876421 1111111 2211 112222222222 23455555666666778888888
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC-C-
Q 003457 272 ALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYG-I- 349 (818)
Q Consensus 272 ~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g-~- 349 (818)
.+|.... -|.++....|-+|+.++|-++-++- -|......|.+.|...|++.+|..+|.+...-.+ +
T Consensus 933 ~~Y~~A~-----D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIR 1001 (1416)
T KOG3617|consen 933 SFYSSAK-----DYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIR 1001 (1416)
T ss_pred HHHHHhh-----hhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8887654 3666777777778888887766542 2444555677788888888888877766432100 0
Q ss_pred -CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------HHhcCC
Q 003457 350 -EPKIEHYGCMVDLL--GRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKE----------IIALEP 416 (818)
Q Consensus 350 -~p~~~~~~~Li~~~--~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~----------~~~~~P 416 (818)
-.....-..|.+.. ....+.-.|-++|++.+.. +...+..|-+.|.+.+|+++.-+ +.+++|
T Consensus 1002 lcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~ 1076 (1416)
T KOG3617|consen 1002 LCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA 1076 (1416)
T ss_pred HHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC
Confidence 00000001122222 2233444555666665421 12223346677777777765411 122455
Q ss_pred C-CcchHHHHHHHHHHhhchHHHHHHHHHH---HHHHHHHhhhhc
Q 003457 417 N-NHGVYVVLSNMYAEAESMKMQLEILLVQ---VLFAGLASAADI 457 (818)
Q Consensus 417 ~-~~~~y~~L~~~l~~~G~~~eA~~l~~~~---~~ll~~~~~~~~ 457 (818)
+ ++...+.-++.+....+|++|..++-.. .-.+..|+..+.
T Consensus 1077 ~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv 1121 (1416)
T KOG3617|consen 1077 GSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNV 1121 (1416)
T ss_pred CCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4 5788889999999999999999965443 356777875443
No 80
>PF13041 PPR_2: PPR repeat family
Probab=98.97 E-value=1.5e-09 Score=82.30 Aligned_cols=50 Identities=22% Similarity=0.480 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003457 78 PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSN 127 (818)
Q Consensus 78 p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~ 127 (818)
||+.+||+||++|++.|++++|+++|++|++.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999998864
No 81
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.8e-06 Score=93.81 Aligned_cols=364 Identities=17% Similarity=0.133 Sum_probs=189.3
Q ss_pred hcCCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCChHHHH
Q 003457 60 SSSGDLSYATRLFNSIQ---SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQ-HTFTFVLKACSNVRSLNCCK 135 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~---~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~-~ty~~ll~~~~~~g~~~~A~ 135 (818)
...|+++.|...|-... ++|.+-|..-..+|+..|++++|++=-.+-++ +.|+- ..|.....++.-.|++++|.
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHH
Confidence 46788888888887654 45667777777788888888887765555554 45553 47777777777788888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHH------HHhhc-C------CHHHHHHHHHHHHHc--------
Q 003457 136 QIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVF------DEIRN-R------TLNVWTTMISGYAQS-------- 194 (818)
Q Consensus 136 ~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~------~~m~~-~------d~~~~~~Li~~~~~~-------- 194 (818)
.-|.+-++... .+...++.|.+++.... .+.+.| ..+.. + ....|..++..+.+.
T Consensus 91 ~ay~~GL~~d~-~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKDP-SNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcCC-chHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 88877777542 25556666666651110 001111 00000 0 001122222221110
Q ss_pred --CChHHHHHHHHHH-----HHcC-------CCC----------------------CHHHHHHHHHHHHhcCChhHHHHH
Q 003457 195 --FRANEALMLFDQM-----LMEG-------FEP----------------------NSVTLASVLSACAQSGCLELGEKV 238 (818)
Q Consensus 195 --g~~~~A~~l~~~m-----~~~g-------~~p----------------------d~~t~~~ll~~~~~~g~~~~A~~i 238 (818)
.+...+...+... ...+ ..| -..-...+.++..+..+++.+.+-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0011111111000 0000 001 112355677777777777777777
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCC---hhhH-------HHHHHHHHHcCCHHHHHHHHHHH
Q 003457 239 HVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERN---IATW-------NAMISGLASHGHAEEALDLFRKL 308 (818)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d---~~~~-------~~Li~~~~~~g~~~~A~~l~~~m 308 (818)
+...+... .+...++....+|...|.+.+....-....+.. ..-| ..+..+|.+.++++.|+..|.+.
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 77777664 555666667777777777766665555444311 1112 22333566667777777777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CH
Q 003457 309 EKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKI-EHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DV 385 (818)
Q Consensus 309 ~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~-~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~ 385 (818)
+.....|+.. .+....+++........ -+.|.. .-...-...+.+.|++.+|++.|.++ ...| |.
T Consensus 325 Lte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da 392 (539)
T KOG0548|consen 325 LTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA 392 (539)
T ss_pred hhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh
Confidence 6544343321 12222333333332221 122221 11112244455556666666655555 2223 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHH
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILL 443 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~ 443 (818)
..|.+..-+|.+.|.+.+|+.-.+..++++|+....|..-+.++.-..+|++|.+.+.
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556666666665666666666555555555555555556666555443
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.96 E-value=1.2e-06 Score=89.68 Aligned_cols=314 Identities=15% Similarity=0.062 Sum_probs=149.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHh
Q 003457 85 TLIRAQASSLNPDKAIFLYMNMRRTGFAPNQ-HTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHV-VNCLVRCYSV 162 (818)
Q Consensus 85 ~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~-~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~Li~~y~~ 162 (818)
-|.+.+..+|++..|+.-|...++- .|+. .++-.-...|...|+-..|..-+..+++. +||... ...-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 3455556666666666666665542 2222 12223333455566666666666666553 444321 1122334556
Q ss_pred CCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003457 163 SSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFV 242 (818)
Q Consensus 163 ~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~ 242 (818)
.|.+++|+.-|+.+.+.++. .+...+|.+-+....+ .......+..+...|+...++.....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 66666666666666543321 0111111111110000 011222333344455566666666666
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003457 243 KMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMP---ERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDIT 319 (818)
Q Consensus 243 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~---~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 319 (818)
++.. +-+...+..-..+|...|+...|+.-++... ..+...+.-+-..+...|+.+.++...++-++. .||...
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~ 258 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKL 258 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchhh
Confidence 5543 3455555555666666666666655444333 345555555666666667777776666666654 444321
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-----HHHHHHHHH
Q 003457 320 FVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD-----VVMWGALLA 393 (818)
Q Consensus 320 ~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd-----~~~~~~Li~ 393 (818)
... .|-+ +.+..+.++.|.+ ..+.++|.++++..++. ...|. ...+..+-.
T Consensus 259 Cf~---~YKk---lkKv~K~les~e~-----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 259 CFP---FYKK---LKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHH---HHHH---HHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 100 0111 1111111111111 22344444444444433 22232 112233333
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
++...+++-+|++...+++++.|++..++..-+.+|.-...||+|+.-++..
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666666666666666666644433
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=9e-07 Score=96.06 Aligned_cols=340 Identities=14% Similarity=0.057 Sum_probs=218.4
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChH
Q 003457 88 RAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLN 167 (818)
Q Consensus 88 ~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~ 167 (818)
.+....|+++.|+.+|.+....... |...|..-..+++..|++++|.+=-.+.++..+. -..-|..+..++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHH
Confidence 3456789999999999998886554 8888999999999999999998877777765322 3557888888888999999
Q ss_pred HHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHH---HHHHHHHHc---CCCCCHHHHHHHHHHHHhc-------CC
Q 003457 168 NARQVFDEIRNR---TLNVWTTMISGYAQSFRANEAL---MLFDQMLME---GFEPNSVTLASVLSACAQS-------GC 231 (818)
Q Consensus 168 ~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~---~l~~~m~~~---g~~pd~~t~~~ll~~~~~~-------g~ 231 (818)
+|+..|.+-.+. +...++-+..++.......+.. .++..+... ........|..++..+.+. .+
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999999987764 3445666666652211000000 000000000 0000111122222221110 01
Q ss_pred hhHHHHHHHHHHH--------c-------CCCC----------------------cHHHHHHHHHHHHhCCCHHHHHHHH
Q 003457 232 LELGEKVHVFVKM--------R-------GFEM----------------------GAILGTALVHMYTKNGALAKAKALF 274 (818)
Q Consensus 232 ~~~A~~i~~~~~~--------~-------g~~~----------------------~~~~~~~Li~~~~~~g~~~~A~~~f 274 (818)
.+...+.+..+.. . ...| -..-...+..+..+..+++.|.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 1111111111110 0 0011 0122346788888889999999999
Q ss_pred hhCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003457 275 DSMPE--RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDI-------TFVGVLSACCHAGFIDVGRQIFGSMKR 345 (818)
Q Consensus 275 ~~m~~--~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~ll~a~~~~g~~~~A~~~~~~m~~ 345 (818)
....+ .++.-++....+|...|.+.++...-...++.|-. ... .+..+..+|.+.++++.++..|.+...
T Consensus 248 ~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 248 AKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 87775 34445667777888888887777666655554422 112 233344577778899999999999776
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH
Q 003457 346 VYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDV-VMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYV 423 (818)
Q Consensus 346 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~-~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~ 423 (818)
.+ ..|+ ...+....+++++..+.. -..|.. .-...-...+.+.|++.+|+..|.+++..+|+++..|.
T Consensus 327 e~-Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs 396 (539)
T KOG0548|consen 327 EH-RTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS 396 (539)
T ss_pred hh-cCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH
Confidence 52 2222 244556667777766655 244543 23333467788999999999999999999999999999
Q ss_pred HHHHHHHHhhchHHHHH
Q 003457 424 VLSNMYAEAESMKMQLE 440 (818)
Q Consensus 424 ~L~~~l~~~G~~~eA~~ 440 (818)
+.+-+|.+.|.+.+|++
T Consensus 397 NRAac~~kL~~~~~aL~ 413 (539)
T KOG0548|consen 397 NRAACYLKLGEYPEALK 413 (539)
T ss_pred HHHHHHHHHhhHHHHHH
Confidence 99999999999999998
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=1.8e-06 Score=97.91 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=64.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003457 255 TALVHMYTKNGALAKAKALFDSMPE--R-NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAG 331 (818)
Q Consensus 255 ~~Li~~~~~~g~~~~A~~~f~~m~~--~-d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 331 (818)
..+...|-..|++++|++.+++..+ | .+..|......|-..|++++|.+.+++.+..... |...-+-....+.+.|
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAG 276 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCC
Confidence 4445555566666666666665554 2 2345555556666666666666666666554322 3333344455556666
Q ss_pred CHHHHHHHHHHHHHHhCCCCCH------HHH--HHHHHHHHHcCCHHHHHHHHHHc
Q 003457 332 FIDVGRQIFGSMKRVYGIEPKI------EHY--GCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 332 ~~~~A~~~~~~m~~~~g~~p~~------~~~--~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
++++|.+++....+. +..|-. ..| .....+|.+.|++..|++.|...
T Consensus 277 ~~e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 277 RIEEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CHHHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666666666555443 222211 111 23345566666666666555443
No 85
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=1.5e-05 Score=90.57 Aligned_cols=401 Identities=13% Similarity=0.103 Sum_probs=230.4
Q ss_pred hHHHHHHHHHHHh-CCCCC-hHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC--CCHHHHHH-HHHHHHh-----CCChhH
Q 003457 29 HQLKQIHAQMIIS-SRIQD-HFAASRLLAFCALSSSGDLSYATRLFNSIQS--PNHFMWNT-LIRAQAS-----SLNPDK 98 (818)
Q Consensus 29 ~~~~~~~~~~~~~-g~~~d-~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~--p~~~~yn~-Li~~~~~-----~g~~~~ 98 (818)
++.++..+.+.+. ..-.| ..........+ .+.|+.++|..+|..+.. |+-..|.. +..+... ..+.+.
T Consensus 18 g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll--~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 18 GDYEEALEHLEKNEKQILDKLAVLEKRAELL--LKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHH
Confidence 3334444444332 23344 34444444555 788888888888887763 44444443 3333311 124566
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 003457 99 AIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSL-NCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIR 177 (818)
Q Consensus 99 Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~ 177 (818)
..++|+++...- |.......+.-.+.....+ ..+..++..+++.|++ .+++.|-..|......+-..+++....
T Consensus 96 ~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~ 170 (517)
T PF12569_consen 96 LLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYV 170 (517)
T ss_pred HHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence 677777776542 3333333332222221122 2345556666666754 355666666665555555555555543
Q ss_pred c------------------CCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHH
Q 003457 178 N------------------RTLN--VWTTMISGYAQSFRANEALMLFDQMLMEGFEPN-SVTLASVLSACAQSGCLELGE 236 (818)
Q Consensus 178 ~------------------~d~~--~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~~~~~~g~~~~A~ 236 (818)
. +... ++..+...|-..|++++|++++++.++. .|+ ...|..-.+.+-+.|++++|.
T Consensus 171 ~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa 248 (517)
T PF12569_consen 171 NSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAA 248 (517)
T ss_pred HhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 1 1111 4567788888999999999999999987 455 667888889999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChh----------hHH--HHHHHHHHcCCHHHHHHH
Q 003457 237 KVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIA----------TWN--AMISGLASHGHAEEALDL 304 (818)
Q Consensus 237 ~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~----------~~~--~Li~~~~~~g~~~~A~~l 304 (818)
..++.+...+ ..|..+-+..+..+.++|+.++|.+++....+++.. .|. ....+|.+.|++..|+..
T Consensus 249 ~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 249 EAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999886 557777788889999999999999999888764421 232 235678899999999888
Q ss_pred HHHHHHc--CC---CCCHHHH----------HHHHHHHHHcCC-------HHHHHHHHHHHHHHhCCCC-----------
Q 003457 305 FRKLEKE--QI---VPNDITF----------VGVLSACCHAGF-------IDVGRQIFGSMKRVYGIEP----------- 351 (818)
Q Consensus 305 ~~~m~~~--g~---~pd~~t~----------~~ll~a~~~~g~-------~~~A~~~~~~m~~~~g~~p----------- 351 (818)
|..+.+. .+ .-|-++| ..+++..-+... ...|.++|-.+........
T Consensus 328 ~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~ 407 (517)
T PF12569_consen 328 FHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENM 407 (517)
T ss_pred HHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccC
Confidence 7766542 11 2233333 222222111111 1223333333322100000
Q ss_pred CHHHHHHHHHHH---HHcCCHHHHHHHH-HH----------c----CCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 003457 352 KIEHYGCMVDLL---GRCGKVLEAEELI-KR----------M----VWKPDVVMWGALLAACKNHG-NIEVAERVVKEII 412 (818)
Q Consensus 352 ~~~~~~~Li~~~---~~~g~~~~A~~~~-~~----------m----~~~pd~~~~~~Li~a~~~~g-~~~~A~~~~~~~~ 412 (818)
+..--..+..-. .+...-+++.+.= ++ . ..+.|... +..-+.+.. =.++|.++++-+.
T Consensus 408 ~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe~A~kfl~pL~ 484 (517)
T PF12569_consen 408 SAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLEEAMKFLKPLL 484 (517)
T ss_pred ChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHHHHHHHHHHHH
Confidence 000000000000 0111111111100 00 0 01112111 122233334 4789999999999
Q ss_pred hcCCCCcchHHHHHHHHHHhhchHHHHHHH
Q 003457 413 ALEPNNHGVYVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 413 ~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~ 442 (818)
+..|++.+.|..-.++|.|.|++--|++.+
T Consensus 485 ~~a~~~~et~~laFeVy~Rk~K~LLaLqaL 514 (517)
T PF12569_consen 485 ELAPDNIETHLLAFEVYLRKGKYLLALQAL 514 (517)
T ss_pred HhCccchhhHHHHhHHHHhcCcHHHHHHHH
Confidence 999999999999999999999999888844
No 86
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=1.8e-06 Score=88.66 Aligned_cols=142 Identities=9% Similarity=0.030 Sum_probs=88.3
Q ss_pred hhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHH
Q 003457 59 LSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCK 135 (818)
Q Consensus 59 ~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~ 135 (818)
+-+.|++++|...+..+.+ ++...+-.|.-.+.-.|.+.+|..+-.+..+ +.-.-..|+....+.++-++-.
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHH
Confidence 3577888888888776652 4555555555555555667777665443322 3344455556666777777766
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHH--HHHH-HHHHHHHcCChHHHHHHHHHHHHc
Q 003457 136 QIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLN--VWTT-MISGYAQSFRANEALMLFDQMLME 210 (818)
Q Consensus 136 ~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~--~~~~-Li~~~~~~g~~~~A~~l~~~m~~~ 210 (818)
.+++.+-+. ..--.+|..+.-..-.+.+|++++.++...+.. ..|. +.-+|.+..-++-+.++++-.+..
T Consensus 142 ~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 142 TFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 666655432 233344555555556788888888888765443 4443 445667777788888888777665
No 87
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.89 E-value=1.9e-07 Score=105.86 Aligned_cols=325 Identities=15% Similarity=0.153 Sum_probs=158.3
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003457 77 SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCL 156 (818)
Q Consensus 77 ~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~L 156 (818)
.|+.++|..+|.-|+..|+.+.|- +|.-|+-+....+...|+.++....+.++.+.++ .|-..+|..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 466777777777777777777766 6776666666666667777777766666666554 5566677777
Q ss_pred HHHHHhCCChHH---HHHHHHHhhcC-------CHHHH---------------HHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003457 157 VRCYSVSSDLNN---ARQVFDEIRNR-------TLNVW---------------TTMISGYAQSFRANEALMLFDQMLMEG 211 (818)
Q Consensus 157 i~~y~~~g~~~~---A~~l~~~m~~~-------d~~~~---------------~~Li~~~~~~g~~~~A~~l~~~m~~~g 211 (818)
..+|.+.||+.. .++.+..+... ...-| ...+......|.++.+++++..+--..
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 777777777654 22211111110 00001 112222233344444444443331110
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCC----hhhHHH
Q 003457 212 FEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERN----IATWNA 287 (818)
Q Consensus 212 ~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d----~~~~~~ 287 (818)
.+. ++..+++-+... ..-.+++........-.++..++.++++.-...|+.+.|..++.+|.+.. ..-+-.
T Consensus 170 --~~~-p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwp 244 (1088)
T KOG4318|consen 170 --WNA-PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWP 244 (1088)
T ss_pred --ccc-hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchh
Confidence 000 111122222221 22222333322222114566666666666666666666666666666532 111222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC
Q 003457 288 MISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCG 367 (818)
Q Consensus 288 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g 367 (818)
|+.+ .++..-++.+++-|++.|+.|+..|+...+..+.+.|....+.. +. +....+++-...-.-.|
T Consensus 245 Ll~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e---------~s-q~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 245 LLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE---------GS-QLAHGFTAAVRSAACRG 311 (1088)
T ss_pred hhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc---------cc-chhhhhhHHHHHHHhcc
Confidence 2222 55555666666666666666666666655555555333221111 11 11111111111111111
Q ss_pred CHHHHHHHHHHc---------C------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCCcchHHHHHHH
Q 003457 368 KVLEAEELIKRM---------V------WKPDVVMWGALLAACKNHGNIEVAERVVKEIIA----LEPNNHGVYVVLSNM 428 (818)
Q Consensus 368 ~~~~A~~~~~~m---------~------~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~----~~P~~~~~y~~L~~~ 428 (818)
..|.+.+++- + ..-....| ++..-..++|+-++.+++...+.. +.|++...+..+..-
T Consensus 312 --~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq 388 (1088)
T KOG4318|consen 312 --LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ 388 (1088)
T ss_pred --cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH
Confidence 2222222211 0 11111233 333345568888888888877753 567777888777766
Q ss_pred HHHhhc
Q 003457 429 YAEAES 434 (818)
Q Consensus 429 l~~~G~ 434 (818)
|.+.-+
T Consensus 389 yFrr~e 394 (1088)
T KOG4318|consen 389 YFRRIE 394 (1088)
T ss_pred HHHHHH
Confidence 665443
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.86 E-value=9.4e-07 Score=86.34 Aligned_cols=193 Identities=16% Similarity=0.063 Sum_probs=99.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHH
Q 003457 224 SACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEE 300 (818)
Q Consensus 224 ~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~ 300 (818)
..|.+.|+...|++-++++++.. +.+..++..+...|.+.|+.+.|.+.|++... .+-...|....-+|.+|++++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~e 121 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEE 121 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHH
Confidence 34444444444444444444443 23334444444444444444444444444332 233344444555555556666
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 301 ALDLFRKLEKEQIVP-NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 301 A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
|...|++....-.-+ -..+|..+.-+..+.|+.+.|...|++.++. .+-.......+.+...+.|++..|..++++.
T Consensus 122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 122 AMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 666665555431111 1245555555555666666666666665543 2233445555666666666666666666655
Q ss_pred C--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003457 380 V--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 380 ~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~ 419 (818)
. ..+....+...|..-...|+.+.+-++=.++.+..|...
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 2 224555555555555666666666666666666666643
No 89
>PF13041 PPR_2: PPR repeat family
Probab=98.85 E-value=7.1e-09 Score=78.58 Aligned_cols=50 Identities=34% Similarity=0.672 Sum_probs=45.3
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003457 280 RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCH 329 (818)
Q Consensus 280 ~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 329 (818)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998864
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=8e-06 Score=90.01 Aligned_cols=191 Identities=10% Similarity=0.001 Sum_probs=90.3
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHH
Q 003457 256 ALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIV-PND--ITFVGVLSACCH 329 (818)
Q Consensus 256 ~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~--~t~~~ll~a~~~ 329 (818)
.+...+...|++++|.+.+++..+ .+...+..+...|...|++++|+.++++..+.... |+. ..+..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 344455555555555555555543 23344555555555666666666666555543211 121 123344555556
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCHHHH-H--HHHHHHHHcCCHHHHHHH---HHHc----CCCCCHHHHHHHHHHHHHcC
Q 003457 330 AGFIDVGRQIFGSMKRVYGIEPKIEHY-G--CMVDLLGRCGKVLEAEEL---IKRM----VWKPDVVMWGALLAACKNHG 399 (818)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~g~~p~~~~~-~--~Li~~~~~~g~~~~A~~~---~~~m----~~~pd~~~~~~Li~a~~~~g 399 (818)
.|++++|..+++++.......+..... + .++..+...|....+.+. .... ..............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 666666666666543220101111111 1 122222223321111111 1110 00001111123444566777
Q ss_pred CHHHHHHHHHHHHhcC-C--------CCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 400 NIEVAERVVKEIIALE-P--------NNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 400 ~~~~A~~~~~~~~~~~-P--------~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
+.++|...++.+.... . .........+.++.+.|++++|.+.+...+
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777777776665421 1 124555667777788888888888665553
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.83 E-value=7.7e-06 Score=90.56 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=55.8
Q ss_pred CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 382 KPDVV--MWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 382 ~pd~~--~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
.|... ++..++..+-+.|+++.|+.+.+.+++--|.-++.|..-++++..+|.+++|...++...
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 35544 445566778899999999999999999999999999999999999999999999876663
No 92
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.81 E-value=0.0002 Score=79.46 Aligned_cols=364 Identities=14% Similarity=0.168 Sum_probs=205.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003457 65 LSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRT-GFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSK 143 (818)
Q Consensus 65 ~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~-g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~ 143 (818)
++.++..+.+|+ ..|-.-+..+.++++.......|++.... -+.-....|...+.-....+-++-+..+++..++
T Consensus 91 ~er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 91 FERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 344444444442 33444555555666666666666555442 1111223455555555555555666666666655
Q ss_pred cCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCH----------HHHHHHHHHHHHcCCh---HHHHHHHHHHHHc
Q 003457 144 SGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTL----------NVWTTMISGYAQSFRA---NEALMLFDQMLME 210 (818)
Q Consensus 144 ~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~----------~~~~~Li~~~~~~g~~---~~A~~l~~~m~~~ 210 (818)
.. +..-.-.+..+++.+++++|.+.+..+...+. ..|..+-....++.+. -...++++.++..
T Consensus 167 ~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r 242 (835)
T KOG2047|consen 167 VA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR 242 (835)
T ss_pred cC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc
Confidence 32 22244455555666666666666655543221 1344333333332211 1222333333322
Q ss_pred CCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC----------------------C
Q 003457 211 GFEPNS--VTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNG----------------------A 266 (818)
Q Consensus 211 g~~pd~--~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g----------------------~ 266 (818)
-+|. ..|.+|..-|.+.|++++|..+|++.++.- ..+.-|..+.++|++-. +
T Consensus 243 --ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d 318 (835)
T KOG2047|consen 243 --FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD 318 (835)
T ss_pred --CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh
Confidence 2232 345555666666666666666666655541 22222233333332211 1
Q ss_pred HHHHHHHHhhCCC---------------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 003457 267 LAKAKALFDSMPE---------------RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPN------DITFVGVLS 325 (818)
Q Consensus 267 ~~~A~~~f~~m~~---------------~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd------~~t~~~ll~ 325 (818)
++-....|+.+.. .++..|..-.. +..|+..+-...|.++.+. +.|- ...+..+..
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHH
Confidence 2222333333322 13333433222 3357788888888888764 2332 235677788
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHcCCCC-------------------
Q 003457 326 ACCHAGFIDVGRQIFGSMKRVYGIEPK---IEHYGCMVDLLGRCGKVLEAEELIKRMVWKP------------------- 383 (818)
Q Consensus 326 a~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~p------------------- 383 (818)
.|...|+++.|..+|++..+. ..+-- ..+|..-..+=.++.+++.|+++++++..-|
T Consensus 396 lYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHH
Confidence 899999999999999997764 22111 4567777777788899999999998873111
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHH
Q 003457 384 -DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLV 444 (818)
Q Consensus 384 -d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~ 444 (818)
+...|..+++.....|-++.-..+|++++++.--.|..-.+.+..+....-++++.++++.
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 2345666666666778888888999999988766677888888888888889999887654
No 93
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.2e-05 Score=88.33 Aligned_cols=377 Identities=13% Similarity=0.036 Sum_probs=216.5
Q ss_pred HHHhhhhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003457 54 LAFCALSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRS 130 (818)
Q Consensus 54 l~~~a~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~ 130 (818)
+.++ .+.+++++|.+..+++.. .+...+..=+-++.+.+++++|+.+.+.-.. ..-+...+..-.....+.+.
T Consensus 19 ln~~--~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 19 LNRH--GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHh--ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence 3555 899999999999998873 4566677777788899999999966543221 11111111122333458899
Q ss_pred hHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003457 131 LNCCKQIHTHVSKSGLDL-DLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLM 209 (818)
Q Consensus 131 ~~~A~~~~~~m~~~g~~p-~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 209 (818)
.++|...++ |..+ +..+...-...+-+.+++++|.++|+.+.+.+...+...+++-+..--......+ |..
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~---~q~ 166 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL---LQS 166 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH---HHh
Confidence 999999887 2232 3446666778888999999999999999877666555444332221111111111 222
Q ss_pred cCCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHHHHc-------------CCCCcH-HHHHHHHHHHHhCCCHHHHHH
Q 003457 210 EGFEPNSVTLASVL---SACAQSGCLELGEKVHVFVKMR-------------GFEMGA-ILGTALVHMYTKNGALAKAKA 272 (818)
Q Consensus 210 ~g~~pd~~t~~~ll---~~~~~~g~~~~A~~i~~~~~~~-------------g~~~~~-~~~~~Li~~~~~~g~~~~A~~ 272 (818)
....| ..+|..+. -.+...|++.+|+++++...+. ++..+. .+...|.-.+...|+.++|..
T Consensus 167 v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 167 VPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred ccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 22233 33555444 3446789999999999988321 112221 233456777889999999999
Q ss_pred HHhhCCCC---Ch----hhHHHHHHHHHHc----------------CCHHHHHHH-------------------------
Q 003457 273 LFDSMPER---NI----ATWNAMISGLASH----------------GHAEEALDL------------------------- 304 (818)
Q Consensus 273 ~f~~m~~~---d~----~~~~~Li~~~~~~----------------g~~~~A~~l------------------------- 304 (818)
+|..+.+. |. ..-|.|+..-... ...+.++.-
T Consensus 246 iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q 325 (652)
T KOG2376|consen 246 IYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQ 325 (652)
T ss_pred HHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99887642 11 1111111110000 000000000
Q ss_pred HHHHHHc--CCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH--
Q 003457 305 FRKLEKE--QIVPNDITFVGVLSACCH--AGFIDVGRQIFGSMKRVYGIEPK-IEHYGCMVDLLGRCGKVLEAEELIK-- 377 (818)
Q Consensus 305 ~~~m~~~--g~~pd~~t~~~ll~a~~~--~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~Li~~~~~~g~~~~A~~~~~-- 377 (818)
.++.... +..|. ..+..++..+.+ ...+.++..++....+. .+-+ ..+...++......|+++.|++++.
T Consensus 326 ~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~ 402 (652)
T KOG2376|consen 326 VRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLF 402 (652)
T ss_pred HHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 0011111 11222 233344433322 22466677776665543 3333 4556677777888999999999888
Q ss_pred ------HcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCC---CcchHHHHHHHHHHhhchHHHHHHHH
Q 003457 378 ------RMV-WKPDVVMWGALLAACKNHGNIEVAERVVKEIIA----LEPN---NHGVYVVLSNMYAEAESMKMQLEILL 443 (818)
Q Consensus 378 ------~m~-~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~----~~P~---~~~~y~~L~~~l~~~G~~~eA~~l~~ 443 (818)
... ..-.+.+...+...+.+.++.+.|..++.++++ ..+. ....+..++..-.+.|+-++|..+++
T Consensus 403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 331 122234445555666777777777777776664 1222 22334455556668899999999776
Q ss_pred HHH
Q 003457 444 VQV 446 (818)
Q Consensus 444 ~~~ 446 (818)
.+.
T Consensus 483 el~ 485 (652)
T KOG2376|consen 483 ELV 485 (652)
T ss_pred HHH
Confidence 653
No 94
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=4e-06 Score=84.27 Aligned_cols=375 Identities=12% Similarity=0.039 Sum_probs=238.1
Q ss_pred hhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCChHHH
Q 003457 59 LSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFV-LKACSNVRSLNCC 134 (818)
Q Consensus 59 ~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~l-l~~~~~~g~~~~A 134 (818)
+.+..++++|++++..-.+ ++....+.|..+|....++..|-.+|+++-. ..|...-|... ...+.+.+.+..|
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHhcccHHH
Confidence 3678889999998876553 3667788888899999999999999999877 45566555443 3456678888899
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH--HHHHhCCChHHHHHHHHHhhc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003457 135 KQIHTHVSKSGLDLDLHVVNCLV--RCYSVSSDLNNARQVFDEIRN-RTLNVWTTMISGYAQSFRANEALMLFDQMLMEG 211 (818)
Q Consensus 135 ~~~~~~m~~~g~~p~~~~~~~Li--~~y~~~g~~~~A~~l~~~m~~-~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 211 (818)
.++...|.+. ++...-..-+ ...-..+|+..+..+.++... .+..+.+.......+.|+++.|.+-|+...+-+
T Consensus 98 LrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 98 LRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 9888877543 1211111111 122357888889999999884 566677777778889999999999999987754
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-------------cH---------------HHHHHHHHHHHh
Q 003457 212 FEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEM-------------GA---------------ILGTALVHMYTK 263 (818)
Q Consensus 212 ~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~-------------~~---------------~~~~~Li~~~~~ 263 (818)
---....|+..+ +..+.++.+.|.+...+++.+|+.. |+ ..+|.-...+.+
T Consensus 175 GyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq 253 (459)
T KOG4340|consen 175 GYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ 253 (459)
T ss_pred CCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence 333345666544 4556788999999999988876432 11 122333345678
Q ss_pred CCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003457 264 NGALAKAKALFDSMPE-----RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQ 338 (818)
Q Consensus 264 ~g~~~~A~~~f~~m~~-----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~ 338 (818)
.++++.|.+.+..|.. -|+++...+.-.- ..+++.+..+-+.-+....+- ...||..++-.||+..-++.|-.
T Consensus 254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAAD 331 (459)
T KOG4340|consen 254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAAD 331 (459)
T ss_pred cccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHH
Confidence 8999999999999985 3667666554322 235566666666666666543 45788888889999998988888
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 003457 339 IFGSMKRVYGIEPKIEHYGCMVDLLG-RCGKVLEAEELIKRMVWKPD--VVMWGALLAACKNHGN---IEVAERVVKEII 412 (818)
Q Consensus 339 ~~~~m~~~~g~~p~~~~~~~Li~~~~-~~g~~~~A~~~~~~m~~~pd--~~~~~~Li~a~~~~g~---~~~A~~~~~~~~ 412 (818)
++.+-....-.-.+...|+ |++++. ..-..++|++-++.+...-- ......-+..-...++ ...|++-|++.+
T Consensus 332 vLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~L 410 (459)
T KOG4340|consen 332 VLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETL 410 (459)
T ss_pred HHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7765211100012233343 344443 35567777776665521000 0111111111111221 223334445555
Q ss_pred hcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 413 ALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 413 ~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
++. .......+.+|.+..++..++++|+.-
T Consensus 411 E~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~S 440 (459)
T KOG4340|consen 411 EKY---LPVLMAQAKIYWNLEDYPMVEKIFRKS 440 (459)
T ss_pred HHH---HHHHHHHHHhhccccccHHHHHHHHHH
Confidence 442 234566778888888888888877654
No 95
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=1.5e-05 Score=87.79 Aligned_cols=190 Identities=14% Similarity=0.078 Sum_probs=91.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC-----Ch--hhHHHHHHHHHHcC
Q 003457 224 SACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPER-----NI--ATWNAMISGLASHG 296 (818)
Q Consensus 224 ~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~-----d~--~~~~~Li~~~~~~g 296 (818)
..+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...+++..+. +. ..|..+...+...|
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 44445555555555555555543 333444445555555555555555555544431 11 12344556666667
Q ss_pred CHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHHcCCHHHHHHH--HHHHHHHhCCC--CCHHHHHHHHHHHHHcCC
Q 003457 297 HAEEALDLFRKLEKEQI-VPNDITF-V--GVLSACCHAGFIDVGRQI--FGSMKRVYGIE--PKIEHYGCMVDLLGRCGK 368 (818)
Q Consensus 297 ~~~~A~~l~~~m~~~g~-~pd~~t~-~--~ll~a~~~~g~~~~A~~~--~~~m~~~~g~~--p~~~~~~~Li~~~~~~g~ 368 (818)
++++|+.+++++..... .+..... + .++.-+...|....+.+. ....... ..+ ...........++...|+
T Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCC
Confidence 77777777666643322 1111111 1 122222233332222222 1111111 011 111222245566777888
Q ss_pred HHHHHHHHHHcC--CCC---C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003457 369 VLEAEELIKRMV--WKP---D------VVMWGALLAACKNHGNIEVAERVVKEIIALE 415 (818)
Q Consensus 369 ~~~A~~~~~~m~--~~p---d------~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~ 415 (818)
.++|.+.++.+. ... . ........-++...|+.++|.+.+.+++.+.
T Consensus 280 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 280 KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888888887762 111 1 1112222234568899999999998887643
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=4.5e-07 Score=95.93 Aligned_cols=248 Identities=12% Similarity=0.065 Sum_probs=162.3
Q ss_pred HHhCCChHHHHHHHHHhhcC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 003457 160 YSVSSDLNNARQVFDEIRNR----TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELG 235 (818)
Q Consensus 160 y~~~g~~~~A~~l~~~m~~~----d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A 235 (818)
+.-.|.+..++.-.+ .... +......+.+++...|+++.++. ++.+.. .|.......+...+....+.+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 2221 22245566778888888775543 333332 56666655555544433444444
Q ss_pred HHHHHHHHHcCCC-CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 003457 236 EKVHVFVKMRGFE-MGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIV 314 (818)
Q Consensus 236 ~~i~~~~~~~g~~-~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 314 (818)
..-++........ .+..+......++...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444433333222 23344444456777889999999888776 56677777888999999999999999999875 3
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHH
Q 003457 315 PNDITFVGVLSACCH----AGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMW 388 (818)
Q Consensus 315 pd~~t~~~ll~a~~~----~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~ 388 (818)
.| .+...+..++.. ...+.+|..+|+++..+ ..+++.+.+.+..++...|++++|.++++++ ...| |..++
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 33 445555555443 34689999999998764 6788899999999999999999999999887 3334 57788
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHhcCCCCc
Q 003457 389 GALLAACKNHGNI-EVAERVVKEIIALEPNNH 419 (818)
Q Consensus 389 ~~Li~a~~~~g~~-~~A~~~~~~~~~~~P~~~ 419 (818)
.+++......|+. +.+.+++.++.+..|+++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 8888888888887 778888899888999843
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.78 E-value=1.1e-05 Score=100.68 Aligned_cols=321 Identities=12% Similarity=-0.000 Sum_probs=205.4
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----C---H-----HHHHHHHHHHH
Q 003457 125 CSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR----T---L-----NVWTTMISGYA 192 (818)
Q Consensus 125 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~----d---~-----~~~~~Li~~~~ 192 (818)
....|+++.+...++.+-......+..........+...|++++|...+....+. + . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4455677666666555421111112223334455566789999998888776421 1 1 12223445667
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CC--cHHHHHHHHHHHHh
Q 003457 193 QSFRANEALMLFDQMLMEGFEPNS----VTLASVLSACAQSGCLELGEKVHVFVKMRGF---EM--GAILGTALVHMYTK 263 (818)
Q Consensus 193 ~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~---~~--~~~~~~~Li~~~~~ 263 (818)
..|++++|...+++..+.-...+. .....+...+...|++++|...+++...... .+ .......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 889999999999998764212222 2334455667789999999999988875411 11 12344566778889
Q ss_pred CCCHHHHHHHHhhCCC-------C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHH
Q 003457 264 NGALAKAKALFDSMPE-------R----NIATWNAMISGLASHGHAEEALDLFRKLEKE--QIVPN--DITFVGVLSACC 328 (818)
Q Consensus 264 ~g~~~~A~~~f~~m~~-------~----d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~pd--~~t~~~ll~a~~ 328 (818)
.|++++|...+++..+ + ....+..+...+...|++++|...+++.... ...+. ...+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 9999999988876543 1 1223445566777889999999999887653 11122 334445666788
Q ss_pred HcCCHHHHHHHHHHHHHHhCCCCCHHHH-----HHHHHHHHHcCCHHHHHHHHHHcCCC--CCH----HHHHHHHHHHHH
Q 003457 329 HAGFIDVGRQIFGSMKRVYGIEPKIEHY-----GCMVDLLGRCGKVLEAEELIKRMVWK--PDV----VMWGALLAACKN 397 (818)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~g~~p~~~~~-----~~Li~~~~~~g~~~~A~~~~~~m~~~--pd~----~~~~~Li~a~~~ 397 (818)
..|++++|.+.++.+............+ ...+..+...|+.++|.+.+...... ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8999999999988875531111111111 11224456689999999998776321 111 123456667889
Q ss_pred cCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 398 HGNIEVAERVVKEIIALE------PNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~------P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.|++++|...++++++.. ++....+..++.++.+.|+.++|.+.+...
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999987742 223457788899999999999999976555
No 98
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.76 E-value=3.9e-06 Score=96.57 Aligned_cols=147 Identities=13% Similarity=0.025 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003457 332 FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVK 409 (818)
Q Consensus 332 ~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~ 409 (818)
+...|...+.+.++. ...+...|+.|.-. ...|.+.-|...|-+.. .+....+|.++...|.+..+++-|.+.|.
T Consensus 798 ~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred hHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHH
Confidence 445788888887765 45566777777655 66678888887776552 33468899999999999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH-----------HHHHHHHhhhhcccCCCCCCCC-----------
Q 003457 410 EIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ-----------VLFAGLASAADILQNPDFESPP----------- 467 (818)
Q Consensus 410 ~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~-----------~~ll~~~~~~~~~~~~~~~~~~----------- 467 (818)
+...++|++...|...+.+....|+.-++..++.-- ..-.|.|-..-...||+.++.+
T Consensus 875 ~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 875 SVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 999999999999999999999999988888866431 1345556555555666654433
Q ss_pred -----CCCCCCCCcceeee
Q 003457 468 -----TNLTPNRSTPFVLL 481 (818)
Q Consensus 468 -----lel~P~~~~~~v~l 481 (818)
+.-.|+...+|...
T Consensus 955 al~~yf~~~p~~~fAy~~~ 973 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAAN 973 (1238)
T ss_pred HHHHHHhcCcchhHHHHHH
Confidence 44567777666543
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.74 E-value=2.9e-05 Score=96.83 Aligned_cols=357 Identities=10% Similarity=-0.062 Sum_probs=226.1
Q ss_pred hcCCCHHHHHHHHhhcCCCCHHH--HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 003457 60 SSSGDLSYATRLFNSIQSPNHFM--WNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQI 137 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~~p~~~~--yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~ 137 (818)
...|++.+|.............. .......+...|+++.+..+++.+.......+..........+...++++++...
T Consensus 352 ~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~ 431 (903)
T PRK04841 352 LAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTL 431 (903)
T ss_pred HHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHH
Confidence 56677776666665554332211 1112233455677777777766653221111222233444556678999999999
Q ss_pred HHHHHHcCCC------CC--HHHHHHHHHHHHhCCChHHHHHHHHHhhc--C--CH----HHHHHHHHHHHHcCChHHHH
Q 003457 138 HTHVSKSGLD------LD--LHVVNCLVRCYSVSSDLNNARQVFDEIRN--R--TL----NVWTTMISGYAQSFRANEAL 201 (818)
Q Consensus 138 ~~~m~~~g~~------p~--~~~~~~Li~~y~~~g~~~~A~~l~~~m~~--~--d~----~~~~~Li~~~~~~g~~~~A~ 201 (818)
+....+.-.. +. ......+...+...|++++|...+++..+ + +. ...+.+...+...|++++|.
T Consensus 432 l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~ 511 (903)
T PRK04841 432 LARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARAL 511 (903)
T ss_pred HHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8887653111 11 12223344556789999999999988654 1 21 24566777888899999999
Q ss_pred HHHHHHHHcCC---CCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCC---CcHHHHHHHHHHHHhCCCHHH
Q 003457 202 MLFDQMLMEGF---EPN--SVTLASVLSACAQSGCLELGEKVHVFVKMR----GFE---MGAILGTALVHMYTKNGALAK 269 (818)
Q Consensus 202 ~l~~~m~~~g~---~pd--~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~----g~~---~~~~~~~~Li~~~~~~g~~~~ 269 (818)
..+++.....- .+. ...+..+...+...|++++|...+++.... +.. .....+..+...+...|++++
T Consensus 512 ~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 591 (903)
T PRK04841 512 AMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDE 591 (903)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99998865311 111 234445566778899999999998887663 211 122344556777888899999
Q ss_pred HHHHHhhCCC------C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHH--H-H-HHHHHHHHHcCCHHH
Q 003457 270 AKALFDSMPE------R--NIATWNAMISGLASHGHAEEALDLFRKLEKEQI--VPNDI--T-F-VGVLSACCHAGFIDV 335 (818)
Q Consensus 270 A~~~f~~m~~------~--d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~--t-~-~~ll~a~~~~g~~~~ 335 (818)
|...+++..+ + ....+..+...+...|++++|.+.++++..... ..... . . ...+..+...|+.+.
T Consensus 592 A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 671 (903)
T PRK04841 592 AEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEA 671 (903)
T ss_pred HHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHH
Confidence 9998887643 1 123455566778899999999999988754211 11111 1 1 112244456789999
Q ss_pred HHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHcC-------CCCC-HHHHHHHHHHHHHcCCHHHH
Q 003457 336 GRQIFGSMKRVYGIEPK---IEHYGCMVDLLGRCGKVLEAEELIKRMV-------WKPD-VVMWGALLAACKNHGNIEVA 404 (818)
Q Consensus 336 A~~~~~~m~~~~g~~p~---~~~~~~Li~~~~~~g~~~~A~~~~~~m~-------~~pd-~~~~~~Li~a~~~~g~~~~A 404 (818)
|.+.+...... ..... ...+..+..++...|++++|...++++. ...+ ..+...+..++...|+.++|
T Consensus 672 A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 672 AANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99887764431 11111 1124567778899999999999998872 1111 34566677788999999999
Q ss_pred HHHHHHHHhcCCC
Q 003457 405 ERVVKEIIALEPN 417 (818)
Q Consensus 405 ~~~~~~~~~~~P~ 417 (818)
.+.+++++++...
T Consensus 751 ~~~L~~Al~la~~ 763 (903)
T PRK04841 751 QRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999987644
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.74 E-value=2e-05 Score=80.90 Aligned_cols=200 Identities=8% Similarity=-0.027 Sum_probs=137.5
Q ss_pred hhcCCCHHHHHHHHhhcCCCCHHHHHHHH---HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCChHHH
Q 003457 59 LSSSGDLSYATRLFNSIQSPNHFMWNTLI---RAQASSLNPDKAIFLYMNMRRTGFAPNQHTFT-FVLKACSNVRSLNCC 134 (818)
Q Consensus 59 ~~k~g~~e~A~~lf~~~~~p~~~~yn~Li---~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~-~ll~~~~~~g~~~~A 134 (818)
+...|++.+|+.-|....+.|+..|.++. ..|...|+..-|+.=|.+..+ .+||...-. .-...+.+.|.+++|
T Consensus 48 lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A 125 (504)
T KOG0624|consen 48 LLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQA 125 (504)
T ss_pred HHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHH
Confidence 35789999999999999998888888875 468899999999999998887 688876433 234567899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003457 135 KQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEP 214 (818)
Q Consensus 135 ~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 214 (818)
..-|+.++++...... ...++.+.-..++-..+. ..+..+...|+...|++....+++.. +.
T Consensus 126 ~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~l~------------~ql~s~~~~GD~~~ai~~i~~llEi~-~W 187 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWVLV------------QQLKSASGSGDCQNAIEMITHLLEIQ-PW 187 (504)
T ss_pred HHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHHHH------------HHHHHHhcCCchhhHHHHHHHHHhcC-cc
Confidence 9999999987543211 112222222222222221 22333445677777777777777763 55
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 003457 215 NSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE 279 (818)
Q Consensus 215 d~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~ 279 (818)
|...|..-..+|...|+...|+.-++.+.+.. ..+...+..+-..+.+.|+.+.++...++..+
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 66677777777777777777777777766654 33444444566677777777777777776665
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=3e-07 Score=97.27 Aligned_cols=242 Identities=12% Similarity=-0.002 Sum_probs=163.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHH
Q 003457 189 SGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALA 268 (818)
Q Consensus 189 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~ 268 (818)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+ +.++.+.. .|.......+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34456789998887666 32222122334455677888888886654 34444433 666666666666555545666
Q ss_pred HHHHHHhhCCC-C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 269 KAKALFDSMPE-R----NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSM 343 (818)
Q Consensus 269 ~A~~~f~~m~~-~----d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m 343 (818)
.+..-+++... + +..........+...|++++|++++.+- .+.......+.+|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77766665543 2 2222222234566779999999888753 35667777889999999999999999998
Q ss_pred HHHhCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 344 KRVYGIEPKIEHYGCMVDLLG----RCGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 344 ~~~~g~~p~~~~~~~Li~~~~----~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
.+ +..|. +...|+.++. -.+.+.+|..+|+++. ..++..+.+.+..++...|++++|.++++++++.+|+
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 74 44553 3333444443 2346999999999994 3467888999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHhhch-HHHHHHHHHH
Q 003457 418 NHGVYVVLSNMYAEAESM-KMQLEILLVQ 445 (818)
Q Consensus 418 ~~~~y~~L~~~l~~~G~~-~eA~~l~~~~ 445 (818)
++++..+++.+..-.|+. +.+.+++..+
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 999999999999999998 4455566555
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=3.3e-05 Score=87.16 Aligned_cols=390 Identities=11% Similarity=0.091 Sum_probs=227.9
Q ss_pred CChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC-------------CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 003457 45 QDHFAASRLLAFCALSSSGDLSYATRLFNSIQS-------------PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGF 111 (818)
Q Consensus 45 ~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~-------------p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~ 111 (818)
.+..+|..+..|| .+..+++-|.-.+-.|.. ++ ..-....-.-.+.|..++|+.+|++-++
T Consensus 755 kS~~vW~nmA~Mc--VkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMC--VKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--- 828 (1416)
T ss_pred hhhHHHHHHHHHh--hhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 4567888899999 888888888777766642 22 2212222233567889999999998876
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHH
Q 003457 112 APNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGY 191 (818)
Q Consensus 112 ~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~ 191 (818)
|..|=+.|-..|.+++|.++-+.--+..+ ..+|......+-..+|++.|++.|++...+-......|.
T Consensus 829 ------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~--- 896 (1416)
T KOG3617|consen 829 ------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK--- 896 (1416)
T ss_pred ------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH---
Confidence 34455667778999999998664322222 245666666677789999999999876443222222221
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 003457 192 AQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAK 271 (818)
Q Consensus 192 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 271 (818)
.++.....+.+++. |...|..-..-+...|+++.|..+|..+.. |-.+++..|-.|+.++|.
T Consensus 897 ---e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa 958 (1416)
T KOG3617|consen 897 ---EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAA 958 (1416)
T ss_pred ---hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHH
Confidence 23333334444433 334555555556677888888888877664 234666677778888887
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---------------CHHHH
Q 003457 272 ALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAG---------------FIDVG 336 (818)
Q Consensus 272 ~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g---------------~~~~A 336 (818)
++-++- .|..+...|...|-..|++.+|+..|.+.+. |...|+.|-..+ +.-.|
T Consensus 959 ~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 959 RIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred HHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 776543 3555666677888888888888888876642 233333332221 22233
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-------------CCCCCHHHHHHHHHHHHHcCCHHH
Q 003457 337 RQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-------------VWKPDVVMWGALLAACKNHGNIEV 403 (818)
Q Consensus 337 ~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-------------~~~pd~~~~~~Li~a~~~~g~~~~ 403 (818)
-++|++. |.. ...-+..|-+.|.+.+|+++--+- ....|+...+.-.+-+....++++
T Consensus 1028 ArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyek 1098 (1416)
T KOG3617|consen 1028 ARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEK 1098 (1416)
T ss_pred HHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHH
Confidence 3333331 110 112233466777777776642211 112356666666666667777777
Q ss_pred HHHHHHHH------Hh----------------cCCCC---------cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Q 003457 404 AERVVKEI------IA----------------LEPNN---------HGVYVVLSNMYAEAESMKMQLEILLVQVLFAGLA 452 (818)
Q Consensus 404 A~~~~~~~------~~----------------~~P~~---------~~~y~~L~~~l~~~G~~~eA~~l~~~~~~ll~~~ 452 (818)
|..++-.+ ++ +.|.. ...+..+++++.++|.|..|-+-+.....-+.+-
T Consensus 1099 AV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AM 1178 (1416)
T KOG3617|consen 1099 AVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAM 1178 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHH
Confidence 76655222 22 12221 3567788999999999999888543332111111
Q ss_pred hhhhcccCCCCCCCC-CCCCCCCCcceeeecCCCCCCCcee
Q 003457 453 SAADILQNPDFESPP-TNLTPNRSTPFVLLNGNNTIPGWTF 492 (818)
Q Consensus 453 ~~~~~~~~~~~~~~~-lel~P~~~~~~v~l~~~~~~~~w~~ 492 (818)
+ .+.+-|+.++-. ..--..+-..|.+-+|..-.-.|..
T Consensus 1179 r--aLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~ 1217 (1416)
T KOG3617|consen 1179 R--ALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQD 1217 (1416)
T ss_pred H--HHHhcCCcceEEEEeeccccceeeeehhhhhhhccccc
Confidence 1 233444443221 2222334566777777766666654
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.69 E-value=7.1e-07 Score=97.59 Aligned_cols=249 Identities=13% Similarity=0.075 Sum_probs=184.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH
Q 003457 188 ISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGAL 267 (818)
Q Consensus 188 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~ 267 (818)
..-+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+++.++.. +.+..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 344567888889999998888775 5567788888888888888888888888888875 56677888888888888888
Q ss_pred HHHHHHHhhCCCCC-hhhHHHHH---------HHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003457 268 AKAKALFDSMPERN-IATWNAMI---------SGLASHGHAEEALDLFRKLEK-EQIVPNDITFVGVLSACCHAGFIDVG 336 (818)
Q Consensus 268 ~~A~~~f~~m~~~d-~~~~~~Li---------~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~A 336 (818)
..|.+.|++-.... ...|.... ..+.....+....++|-++.. .+..+|......|.-.|.-.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 88888887653210 00000000 112222334456666666654 44457888888888889999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003457 337 RQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD-VVMWGALLAACKNHGNIEVAERVVKEIIAL 414 (818)
Q Consensus 337 ~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~ 414 (818)
..+|+.++.. -+-|..+||.|.-.++...+.++|+..|+++ ..+|. +.....|.-.|...|.+++|.+.|-.++.+
T Consensus 450 iDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 450 VDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999864 4446889999999999999999999999998 57887 678888999999999999999999999887
Q ss_pred CCCC----------cchHHHHHHHHHHhhchHHHHH
Q 003457 415 EPNN----------HGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 415 ~P~~----------~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
.+.+ ..+|..|=.++.-.++.|-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 6552 1355555555555555553333
No 104
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.69 E-value=3.8e-05 Score=85.42 Aligned_cols=354 Identities=13% Similarity=0.092 Sum_probs=216.1
Q ss_pred HHHHHhhhhcCCCHHHHHHHHhhcCCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003457 52 RLLAFCALSSSGDLSYATRLFNSIQSPNHF-MWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRS 130 (818)
Q Consensus 52 ~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~-~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~ 130 (818)
..+.|| ....++++|+.+-+-...|... .-.+.++++...|+-++|-++- .. +-.+ ...|..|.+.|.
T Consensus 562 ~aigmy--~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~ 630 (1636)
T KOG3616|consen 562 EAIGMY--QELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGK 630 (1636)
T ss_pred HHHHHH--HHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCC
Confidence 447788 8888999999888766655433 2223455555566666554431 11 1111 123455556665
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC--------------------------HH-H
Q 003457 131 LNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRT--------------------------LN-V 183 (818)
Q Consensus 131 ~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d--------------------------~~-~ 183 (818)
+..|.+....- ..+..|......+...+.+..-+++|-++|+++...+ ++ .
T Consensus 631 p~~a~~~a~n~--~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~l 708 (1636)
T KOG3616|consen 631 PAKAARAALND--EELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKL 708 (1636)
T ss_pred chHHHHhhcCH--HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhH
Confidence 55544332110 0111233333333333333333333333333332211 11 1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 003457 184 WTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTK 263 (818)
Q Consensus 184 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~ 263 (818)
-......+...|+++.|+..|-+... ..-.+.+....+++.+|..+++.+..+. .....|-.+.+-|..
T Consensus 709 ee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan 777 (1636)
T KOG3616|consen 709 EEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYAN 777 (1636)
T ss_pred HHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhcc
Confidence 11223334455666666666544321 2233455566778899999998888764 334556678889999
Q ss_pred CCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 264 NGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSM 343 (818)
Q Consensus 264 ~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m 343 (818)
.|+++.|+++|.+.- .++--|..|.+.|+++.|.++-.+.. |.......|..-..-+-+.|++.+|+++|-.+
T Consensus 778 ~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 778 KGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred chhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 999999999997653 34456778999999999988766543 33434455555556677889999999887653
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH
Q 003457 344 KRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYV 423 (818)
Q Consensus 344 ~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~ 423 (818)
. .|+ .-|.+|-+.|..++.+++.++-.-..-..|...+..-|...|+..+|++.|-++- -+.
T Consensus 851 ~-----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~--------d~k 912 (1636)
T KOG3616|consen 851 G-----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG--------DFK 912 (1636)
T ss_pred c-----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh--------hHH
Confidence 2 344 3467899999999999998887422235677778888899999999998886543 356
Q ss_pred HHHHHHHHhhchHHHHHHHHHH--------HHHHHHHhh
Q 003457 424 VLSNMYAEAESMKMQLEILLVQ--------VLFAGLASA 454 (818)
Q Consensus 424 ~L~~~l~~~G~~~eA~~l~~~~--------~~ll~~~~~ 454 (818)
.-+++|...+.|++|.++-+.- +.++|+-+.
T Consensus 913 aavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 6778899999999999975432 356666653
No 105
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.66 E-value=2.5e-07 Score=87.57 Aligned_cols=90 Identities=9% Similarity=-0.113 Sum_probs=52.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 356 YGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 356 ~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
+..+...+...|++++|.+.|+++ ...| +...|..+..++...|++++|+..|+++++++|+++..+..++.++.+.|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 334455555666666666666655 2223 45555666666666666666666666666666666666666666666666
Q ss_pred chHHHHHHHHHH
Q 003457 434 SMKMQLEILLVQ 445 (818)
Q Consensus 434 ~~~eA~~l~~~~ 445 (818)
++++|++.++..
T Consensus 107 ~~~eAi~~~~~A 118 (144)
T PRK15359 107 EPGLAREAFQTA 118 (144)
T ss_pred CHHHHHHHHHHH
Confidence 666666654444
No 106
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.65 E-value=7.1e-06 Score=94.48 Aligned_cols=371 Identities=14% Similarity=0.074 Sum_probs=221.5
Q ss_pred CCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 003457 62 SGDLSYATRLFNSIQSPN---HFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIH 138 (818)
Q Consensus 62 ~g~~e~A~~lf~~~~~p~---~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~ 138 (818)
..+...|...|=+..+.| ...|..|...|...-+..+|..+|.+..+.+.. |..........|++..+++.|..+.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHH
Confidence 345777777776665433 347888888888777888899999888775433 5667778888899999999988883
Q ss_pred HHHHHcCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 003457 139 THVSKSGLD-LDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEP 214 (818)
Q Consensus 139 ~~m~~~g~~-p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 214 (818)
-..-+.... .-...|..+.-.|.+.++...|..-|+...+- |...|..++.+|.++|++..|+++|.+.... .|
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 322221110 01122333555677888888888888887764 5557888999999999999999999888764 45
Q ss_pred CHHHHHHH--HHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-------CCCHHHHHHHHhhCCCCChhhH
Q 003457 215 NSVTLASV--LSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTK-------NGALAKAKALFDSMPERNIATW 285 (818)
Q Consensus 215 d~~t~~~l--l~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~-------~g~~~~A~~~f~~m~~~d~~~~ 285 (818)
+.. |... ....+..|.+.++...+...+... .......+.|...+.+ .|-..+|...|++-.+. ..
T Consensus 628 ~s~-y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~---f~ 702 (1238)
T KOG1127|consen 628 LSK-YGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES---FI 702 (1238)
T ss_pred HhH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH---HH
Confidence 443 3222 223456788888888888777642 1112222233333332 22233333333322210 01
Q ss_pred HHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH---H---HHHHHHHHHHHHhCCCCCHHH
Q 003457 286 NAMISGLASHG----HAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFI---D---VGRQIFGSMKRVYGIEPKIEH 355 (818)
Q Consensus 286 ~~Li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~---~---~A~~~~~~m~~~~g~~p~~~~ 355 (818)
++++...+... -...|..+|.+.. .. .|+......+..-..+.+.. + -|.+.+-.-. .+..+...
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl---sl~~~~~~ 777 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL---SLAIHMYP 777 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH---HHhhccch
Confidence 11111111000 0112333333332 11 23332222222222223222 1 1222222212 12233556
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 356 YGCMVDLLGR--------CGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 356 ~~~Li~~~~~--------~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
|..|+.-|.+ ..+...|+..+++.. ...+..+|+.|... ...|++.-|.-.|-+.+...|.....|.++
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nl 856 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNL 856 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheecc
Confidence 6666555543 223456778887772 33567888887765 667899999999999999999999999999
Q ss_pred HHHHHHhhchHHHHHHHHHHH
Q 003457 426 SNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 426 ~~~l~~~G~~~eA~~l~~~~~ 446 (818)
+.++.+..+++.|.+.+....
T Consensus 857 gvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhh
Confidence 999999999999999888774
No 107
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=0.0001 Score=76.10 Aligned_cols=337 Identities=11% Similarity=0.059 Sum_probs=171.6
Q ss_pred CCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 003457 62 SGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHV 141 (818)
Q Consensus 62 ~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m 141 (818)
.|.+.+|..+-++.++. +-.-..|+..--+.++-++...+-+.+.. ..+--.+|.......-.+++|.+++..+
T Consensus 104 Lg~Y~eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888776432 22222333444445555555544444432 1122233333333334567777777777
Q ss_pred HHcCCCCCHHHHHH-HHHHHHhCCChHHHHHHHHHhhc--C-CHHHHHHHHHHHHHcCCh--------------------
Q 003457 142 SKSGLDLDLHVVNC-LVRCYSVSSDLNNARQVFDEIRN--R-TLNVWTTMISGYAQSFRA-------------------- 197 (818)
Q Consensus 142 ~~~g~~p~~~~~~~-Li~~y~~~g~~~~A~~l~~~m~~--~-d~~~~~~Li~~~~~~g~~-------------------- 197 (818)
+..+. +-...|. +.-+|.+.+-++-+.++++--.+ + ++.+.|..+....+.-+-
T Consensus 178 L~dn~--ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f 255 (557)
T KOG3785|consen 178 LQDNP--EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPF 255 (557)
T ss_pred HhcCh--hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchh
Confidence 66432 2222222 33456666666666666655443 1 233444444333332222
Q ss_pred ---------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 003457 198 ---------------NEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYT 262 (818)
Q Consensus 198 ---------------~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~ 262 (818)
+.|++++-.+.+. .| ..-..|+--|.++++..+|..+.+.+. +.++.-|-.-.-.++
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~a 327 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFA 327 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHH
Confidence 2233332222211 11 112233334455666666655544332 222222211111122
Q ss_pred hCC-------CHHHHHHHHhhCCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003457 263 KNG-------ALAKAKALFDSMPE-----RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHA 330 (818)
Q Consensus 263 ~~g-------~~~~A~~~f~~m~~-----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 330 (818)
..| .+.-|.+.|+-.-+ ..+.--.++.+.+.-..++++.+-+++.+..--.. |...-..+..+++..
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~at 406 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLAT 406 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHh
Confidence 222 24445555554432 12233445566666666777777777766654223 322233466777778
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHH
Q 003457 331 GFIDVGRQIFGSMKRVYGIEPKIEHY-GCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGAL-LAACKNHGNIEVAERVV 408 (818)
Q Consensus 331 g~~~~A~~~~~~m~~~~g~~p~~~~~-~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~L-i~a~~~~g~~~~A~~~~ 408 (818)
|++.+|+++|-++... .+ .|..+| ..|.++|.++++++-|.+++-++....+..+...+ ..-|.+.+.+--|-+.|
T Consensus 407 gny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred cChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888887765432 22 334444 45567778888888888887777533344444333 34577777777777778
Q ss_pred HHHHhcCCC
Q 003457 409 KEIIALEPN 417 (818)
Q Consensus 409 ~~~~~~~P~ 417 (818)
..+..++|.
T Consensus 485 d~lE~lDP~ 493 (557)
T KOG3785|consen 485 DELEILDPT 493 (557)
T ss_pred hHHHccCCC
Confidence 777777776
No 108
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00027 Score=81.73 Aligned_cols=320 Identities=12% Similarity=0.112 Sum_probs=195.1
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC----------
Q 003457 78 PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFA--PNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSG---------- 145 (818)
Q Consensus 78 p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~--pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g---------- 145 (818)
.|+..-+....++...+-+.+-++++++..-.... -+...-+.|+-...+. +.....++.+++-..+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~ 1060 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIE 1060 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhh
Confidence 56666667777888888888888888877643211 1111222233222222 2233333333332211
Q ss_pred -------------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 003457 146 -------------LDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGF 212 (818)
Q Consensus 146 -------------~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 212 (818)
...+....+.|++ ..+.++.|.++-+++. .+..|..+..+-.+.+...+|++-|-+.
T Consensus 1061 ~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1061 NQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred hhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 0112222222222 1233344443333332 3457999999999999999998877653
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHH
Q 003457 213 EPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGL 292 (818)
Q Consensus 213 ~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~ 292 (818)
-|...|..++..+.+.|.+++-.+++..+++...+|.. -..|+-+|++.+++.+-++++ ..||..-......-|
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRC 1204 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHH
Confidence 36678999999999999999999999988887655554 457899999999988776654 346666667777778
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003457 293 ASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEA 372 (818)
Q Consensus 293 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A 372 (818)
...+.++.|.-+|... ..|..|...+...|+++.|...-++. .+..+|..+-.+|...+.+.-|
T Consensus 1205 f~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred hhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHH
Confidence 8888888877777633 34566666677777777776654432 2445666666666555544433
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 003457 373 EELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEA 432 (818)
Q Consensus 373 ~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~ 432 (818)
.-.=-. +--...-..-|+.-|...|-+++-+.+++..+.+.--+...+..|+-+|.+-
T Consensus 1269 QiCGL~--iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1269 QICGLN--IIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HhcCce--EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 211000 1122344455666667777777777777777666666666666666666543
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.57 E-value=2.8e-06 Score=80.35 Aligned_cols=126 Identities=10% Similarity=-0.051 Sum_probs=104.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-C
Q 003457 302 LDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-V 380 (818)
Q Consensus 302 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~ 380 (818)
..+|++.++. .|+ .+..+..++...|++++|...|+.+... -+.+...|..+..++.+.|++++|+..|+++ .
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3456666654 343 3556778889999999999999998864 4557889999999999999999999999998 3
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 381 WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 381 ~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
..| +...+..+..++...|++++|+..|++++++.|+++..+...+.++...+
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 445 68899999999999999999999999999999999999988887765443
No 110
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.57 E-value=3.9e-06 Score=86.72 Aligned_cols=179 Identities=9% Similarity=-0.050 Sum_probs=116.5
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CC-h---hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 003457 250 GAILGTALVHMYTKNGALAKAKALFDSMPE--RN-I---ATWNAMISGLASHGHAEEALDLFRKLEKEQIVPND--ITFV 321 (818)
Q Consensus 250 ~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d-~---~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~ 321 (818)
....+..++..+.+.|++++|...|+++.+ |+ . ..+..+..+|.+.|++++|+..++++.+..+.... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 445566677777778888888887776654 21 1 35666777777888888888888887765332111 2344
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003457 322 GVLSACCHA--------GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLA 393 (818)
Q Consensus 322 ~ll~a~~~~--------g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~ 393 (818)
.+..++.+. +++++|.+.++.+.+. .+.+...+..+..... ..... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHH
Confidence 445555544 5677777777777654 2222223222221110 00000 011124566
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPNN---HGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~~---~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.+.+.|++++|+..++++++..|++ ++.+..++.++.+.|++++|.++++.+
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7889999999999999999987764 478999999999999999999987766
No 111
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=1.4e-05 Score=80.47 Aligned_cols=307 Identities=12% Similarity=0.055 Sum_probs=146.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCH--HHHH-HHHHHHHH
Q 003457 117 TFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTL--NVWT-TMISGYAQ 193 (818)
Q Consensus 117 ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~--~~~~-~Li~~~~~ 193 (818)
-+...+..+.+..++..+.+++..-.+...+ +......|..+|-+..++..|-+.++++...-+ .-|. .-...+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK 90 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence 3455555556666666676666665554322 445556666666666677777777666654322 1221 12234455
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 003457 194 SFRANEALMLFDQMLMEGFEPNSVTLASVLSA--CAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAK 271 (818)
Q Consensus 194 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~--~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 271 (818)
.+.+.+|+++...|... |+...-..-+.+ ..+.+++..+..+.++.-.. .+..+.+.......+.|+++.|.
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHH
Confidence 56666666666665432 121111111111 12344555555555444322 12333333444445566666666
Q ss_pred HHHhhCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHH
Q 003457 272 ALFDSMPE----RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSAC-CHAGFIDVGRQIFGSMKRV 346 (818)
Q Consensus 272 ~~f~~m~~----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-~~~g~~~~A~~~~~~m~~~ 346 (818)
+-|+...+ .....||.-+ +..+.++++.|+++..++++.|++-.+. ++.=+..- .....+..-..++...+
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvrsvgNt~~lh~Sal-- 240 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVRSVGNTLVLHQSAL-- 240 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchhcccchHHHHHHHH--
Confidence 66665554 2233444332 3334456666666666666655542110 00000000 00000000000000000
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 003457 347 YGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV----WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 347 ~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y 422 (818)
...+|.-...+.+.|+++.|.+.+-.|+ ...|++|...+.-. -..+++.+..+-++-.++++|--.+++
T Consensus 241 ------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETF 313 (459)
T KOG4340|consen 241 ------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETF 313 (459)
T ss_pred ------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHH
Confidence 1122333333456667777777666664 22355665555422 234445555555666666666656666
Q ss_pred HHHHHHHHHhhchHHHHHH
Q 003457 423 VVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 423 ~~L~~~l~~~G~~~eA~~l 441 (818)
.++.-+|++..-++-|-.+
T Consensus 314 ANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred HHHHHHHhhhHHHhHHHHH
Confidence 6666666666666666554
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=4.3e-06 Score=83.58 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=68.7
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH-HHcCC--HHHH
Q 003457 330 AGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAAC-KNHGN--IEVA 404 (818)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~-~~~g~--~~~A 404 (818)
.++.+++...++...+. -+.|...|..|...|...|++++|...|+++ ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 34455555555555543 4455666666666666666666666666665 2334 455555555543 45555 3666
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 405 ERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 405 ~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.++++++++.+|+++.++..++..+.+.|++++|++.++.+
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666655554
No 113
>PLN02789 farnesyltranstransferase
Probab=98.54 E-value=2.4e-05 Score=83.92 Aligned_cols=198 Identities=11% Similarity=0.002 Sum_probs=114.6
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC-CHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCH--HHHHHH
Q 003457 231 CLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNG-ALAKAKALFDSMPE---RNIATWNAMISGLASHGHA--EEALDL 304 (818)
Q Consensus 231 ~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~--~~A~~l 304 (818)
+.++|.....++++.. +.+..+++....++.+.+ +++++++.++++.+ ++..+|+.....+.+.++. ++++.+
T Consensus 52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 3344444444444432 222233333333333333 34555555554443 2334455444444444442 556666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc---CC----HHHHHHHHH
Q 003457 305 FRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRC---GK----VLEAEELIK 377 (818)
Q Consensus 305 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~---g~----~~~A~~~~~ 377 (818)
++++++...+ |..+|.....++.+.|+++++++.++++++. .+.|...|+.....+.+. |+ .+++++..+
T Consensus 131 ~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 131 TRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 6666665443 5566666666666777777777777777764 344555666555544443 22 245566664
Q ss_pred Hc-CCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 003457 378 RM-VWKP-DVVMWGALLAACKNH----GNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEA 432 (818)
Q Consensus 378 ~m-~~~p-d~~~~~~Li~a~~~~----g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~ 432 (818)
++ ...| |...|+.+...+... ++..+|.+.+.+.++.+|+++.++..|+++|...
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 44 3445 567788777777662 4556788888888888999899999999999864
No 114
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.48 E-value=8.4e-05 Score=82.76 Aligned_cols=253 Identities=16% Similarity=0.146 Sum_probs=133.7
Q ss_pred HHHhCCChHHHHHHHHHhhcCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 003457 159 CYSVSSDLNNARQVFDEIRNRTLNV--WTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGE 236 (818)
Q Consensus 159 ~y~~~g~~~~A~~l~~~m~~~d~~~--~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~ 236 (818)
+......+.+|+.+++.+..++..+ |-.+...|...|+++.|.++|.+.- .+.-.|..|.+.|+++.|.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 3344555566666666555544332 4455556666666666666664431 2334455566666666666
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003457 237 KVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPN 316 (818)
Q Consensus 237 ~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd 316 (818)
++-++.. |.+.....|-+-..-+-+.|++.+|+++|-.+.+|+.. |..|-+.|..+..+++..+-.-. .-
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~h~d---~l 881 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKHHGD---HL 881 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHhChh---hh
Confidence 5554443 22333444444455555666666666666666555532 44566666666665555443211 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC----CCHHHHH---
Q 003457 317 DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWK----PDVVMWG--- 389 (818)
Q Consensus 317 ~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----pd~~~~~--- 389 (818)
..|...+..-+...|++..|+..|-+.. -|.+-+++|...+.|++|.++-+.-+-. .-...|.
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi 951 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI 951 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh
Confidence 2355566667777788888877665532 2455666677777777777666544210 0011111
Q ss_pred ---HHHHHHHHcCCHHHHHHHH------HHHHh-----cCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 390 ---ALLAACKNHGNIEVAERVV------KEIIA-----LEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 390 ---~Li~a~~~~g~~~~A~~~~------~~~~~-----~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
..+..+-++|..++|+... +-+.+ ..-.-.+.+..++..+...|++++|-+
T Consensus 952 ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edask 1016 (1636)
T KOG3616|consen 952 GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASK 1016 (1636)
T ss_pred CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhH
Confidence 1122233444444444321 11111 112235567777777778888888755
No 115
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.00058 Score=79.08 Aligned_cols=305 Identities=13% Similarity=0.099 Sum_probs=190.9
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 003457 92 SSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQ 171 (818)
Q Consensus 92 ~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~ 171 (818)
.++-+++|+.+|++.- .+......|+.. .+.++.|.++-++. ....+|..+..+-.+.+.+.+|.+
T Consensus 1060 ~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHH
Confidence 3444556666665432 234444444432 34455555554432 145789999999999999999998
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcH
Q 003457 172 VFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGA 251 (818)
Q Consensus 172 l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~ 251 (818)
-|-+ ..|+..|...+....+.|.|++-.+++...++..-+|... ..|+-+|++.+++.+.+..+ ..|+.
T Consensus 1126 Syik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~ 1194 (1666)
T KOG0985|consen 1126 SYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNV 1194 (1666)
T ss_pred HHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCc
Confidence 8744 4577889999999999999999999998888776677666 45788899998877765543 24666
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003457 252 ILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAG 331 (818)
Q Consensus 252 ~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 331 (818)
.....+.+-|...+.++.|.-+|. ++.-|..|...+...|++..|.+.-++.- +..||..+-.+|...+
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKE 1263 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchh
Confidence 666778888889999999988887 44568888888888888888887766532 4456776666776655
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003457 332 FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-V-WKPDVVMWGALLAACKNHGNIEVAERVVK 409 (818)
Q Consensus 332 ~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~Li~a~~~~g~~~~A~~~~~ 409 (818)
.+..|.- ... .+-....-...|+..|...|-+++-+.+++.. + .+.....|+-|.-.|.+-+ .++..+.++
T Consensus 1264 EFrlAQi-----CGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~ 1336 (1666)
T KOG0985|consen 1264 EFRLAQI-----CGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLK 1336 (1666)
T ss_pred hhhHHHh-----cCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 5544331 110 12223344556666777777777777776655 2 1223334444444443322 333333332
Q ss_pred HHHh-cC-------CCCcchHHHHHHHHHHhhchHHHH
Q 003457 410 EIIA-LE-------PNNHGVYVVLSNMYAEAESMKMQL 439 (818)
Q Consensus 410 ~~~~-~~-------P~~~~~y~~L~~~l~~~G~~~eA~ 439 (818)
-... ++ -+....|..|+-+|.+-..||.|.
T Consensus 1337 LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1337 LFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 2211 00 112445555555555555555443
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=1.9e-05 Score=88.82 Aligned_cols=207 Identities=11% Similarity=0.025 Sum_probs=126.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHHcCCH
Q 003457 221 SVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--RNIATWNAMISGLASHGHA 298 (818)
Q Consensus 221 ~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~Li~~~~~~g~~ 298 (818)
.+...+...|-...|..+++++.. +...+.+|+..|+..+|..+..+..+ +|+..|..+........-+
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHH
Confidence 344455555666666666655543 23455666666666666665554443 4555666666555555556
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 299 EEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKR 378 (818)
Q Consensus 299 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 378 (818)
++|.++.+..... .-..+.....+.++++++.+.|+.-.+. .+.-..+|-.+..+..+.++++.|.+.|..
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 6666666543221 1112222223356677777766665543 233456677777777777777777777766
Q ss_pred c-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 379 M-VWKPD-VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 379 m-~~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
. ...|| ...|+++-.+|.+.|+..+|...++++++-+-++...+-+..-+..+.|.+++|++.+..+
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 6 34554 5677777777777777777777777777777666777777777777777777777755444
No 117
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.40 E-value=4.3e-05 Score=76.39 Aligned_cols=154 Identities=12% Similarity=0.129 Sum_probs=118.3
Q ss_pred HHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003457 258 VHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGR 337 (818)
Q Consensus 258 i~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~ 337 (818)
+-.|...|+++......+.+..+. ..+...++.++++..+++..+..+ .|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888777655544333221 012235677888888888887643 37788899999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 338 QIFGSMKRVYGIEPKIEHYGCMVDLL-GRCGK--VLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEII 412 (818)
Q Consensus 338 ~~~~~m~~~~g~~p~~~~~~~Li~~~-~~~g~--~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~ 412 (818)
..|++..+. .+.+...+..+..++ ...|+ .++|.++++++ ...| +...+..+...+.+.|++++|+..|++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998875 455788888888864 67777 59999999998 3445 57888889999999999999999999999
Q ss_pred hcCCCCcchH
Q 003457 413 ALEPNNHGVY 422 (818)
Q Consensus 413 ~~~P~~~~~y 422 (818)
++.|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9988765544
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=2.5e-05 Score=87.83 Aligned_cols=184 Identities=16% Similarity=0.182 Sum_probs=153.7
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 247 FEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSA 326 (818)
Q Consensus 247 ~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 326 (818)
.+|-...-..+.+.+...|-...|..+|+++ ..|.-.+.+|...|+..+|..+.++..++ +||+..|..++..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 3455566677899999999999999999976 56888899999999999999999988874 7888999888888
Q ss_pred HHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 003457 327 CCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVA 404 (818)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A 404 (818)
.....-+++|.++.++...+ .-..+.....+.++++++.+.|+.- ...| ...+|..+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777788888888774432 2233333345689999999999875 4455 578899999888999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 405 ERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 405 ~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.+.|.+...++|++.+.|+++..+|.+.|+..+|...++..
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999977665
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.38 E-value=3.4e-05 Score=90.85 Aligned_cols=130 Identities=13% Similarity=0.045 Sum_probs=98.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHH
Q 003457 314 VPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD-VVMWGAL 391 (818)
Q Consensus 314 ~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~L 391 (818)
..+...+..|..+..+.|.+++|..+++.+.+. .+.+......++..+.+.+++++|+..+++. ...|+ ......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 335677777778888888888888888887764 3334666677777888888888888888777 34454 5566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 392 LAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 392 i~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
..++.+.|++++|..+|++++..+|+++.++..++.++.+.|+.++|...++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777778888888888888888888888888888888888888888888866555
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.37 E-value=2.7e-05 Score=80.38 Aligned_cols=183 Identities=17% Similarity=0.081 Sum_probs=131.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHhCCCHHHHHHHHhhCCC--C-Chh---
Q 003457 213 EPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGA---ILGTALVHMYTKNGALAKAKALFDSMPE--R-NIA--- 283 (818)
Q Consensus 213 ~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~---~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~-d~~--- 283 (818)
......+..+...+.+.|++++|...++++.+.. +.+. ..+..+..+|.+.|++++|...|+++.+ | +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456677888888999999999999999998874 2222 4667789999999999999999999875 2 222
Q ss_pred hHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHH
Q 003457 284 TWNAMISGLASH--------GHAEEALDLFRKLEKEQIVPND-ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIE 354 (818)
Q Consensus 284 ~~~~Li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 354 (818)
++..+..++.+. |++++|.+.|+++.+.. |+. .....+.... . . ..... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---~------~~~~~---------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---L------RNRLA---------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---H------HHHHH---------H
Confidence 466666667655 78999999999998863 332 2222221110 0 0 00100 1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 355 HYGCMVDLLGRCGKVLEAEELIKRMV-WKP----DVVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 355 ~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p----d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
....+...|.+.|++++|+..++++. ..| ....+..++.++.+.|++++|..+++.+....|+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 12356677899999999999998883 223 2578889999999999999999999888776664
No 121
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.36 E-value=3.6e-05 Score=91.67 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCC--------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 003457 251 AILGTALVHMYTKNGALAKAKALFDSMPE--------RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVG 322 (818)
Q Consensus 251 ~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--------~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 322 (818)
...|-..|....+.++.++|++++++... .-...|.+++..-..-|.-+...++|+++.+. .-....|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 34444445555555555555555554442 12234555555444455555555555555543 111233445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC---CHHHHHHHHHHHHHc
Q 003457 323 VLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP---DVVMWGALLAACKNH 398 (818)
Q Consensus 323 ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p---d~~~~~~Li~a~~~~ 398 (818)
|...|.+.+..++|.++++.|.++++ -....|..++..+.++.+-++|..+++++. .-| ........+..-.+.
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 55555555555666666666555533 344455555555555555555555555541 112 223333333344455
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 399 GNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 399 g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
|+.+.+..+|+..+...|...+.|+.+++.-.+.|..+.+..+|+..
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 55566555665555555555555555555555555555555555444
No 122
>PLN02789 farnesyltranstransferase
Probab=98.35 E-value=0.0002 Score=76.85 Aligned_cols=202 Identities=14% Similarity=0.021 Sum_probs=117.7
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH--
Q 003457 191 YAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSG-CLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGAL-- 267 (818)
Q Consensus 191 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g-~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~-- 267 (818)
+...++.++|+.++.++++.. +-+...|.....++...+ +++++...++++.+.. +.+..+++....++.+.++.
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence 334456666666666666542 223334444444444455 4566666666666654 33444455444444444442
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CC----HHHHH
Q 003457 268 AKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHA---GF----IDVGR 337 (818)
Q Consensus 268 ~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~---g~----~~~A~ 337 (818)
+++..+++++.+ +|..+|+...-++...|+++++++.+.++++.++. |...|+....++.+. +. .++..
T Consensus 125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHH
Confidence 455666665554 45667777777777778888888888888776555 445555554444443 22 23555
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHH
Q 003457 338 QIFGSMKRVYGIEPKIEHYGCMVDLLGRC----GKVLEAEELIKRM-VWKP-DVVMWGALLAACKN 397 (818)
Q Consensus 338 ~~~~~m~~~~g~~p~~~~~~~Li~~~~~~----g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~ 397 (818)
.+..+++.. .+-|...|+.+...|... ++..+|.+.+.+. ...| +...+..|++.|.+
T Consensus 204 ~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 666566654 455667777777777663 3445677777665 2233 46667777777764
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=0.00015 Score=86.74 Aligned_cols=199 Identities=13% Similarity=0.155 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-CH-HHHHHHHH
Q 003457 116 HTFTFVLKACSNVRSLNCCKQIHTHVSKS-GLDL---DLHVVNCLVRCYSVSSDLNNARQVFDEIRNR-TL-NVWTTMIS 189 (818)
Q Consensus 116 ~ty~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~p---~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~-d~-~~~~~Li~ 189 (818)
..|...|....+.++.++|+++.+++++. ++.- -..+|.+++++-...|.-+...++|++..+- |. ..|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 35555666666666677777766666543 1111 1235666666666666666666666666553 32 35666666
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhCCCH
Q 003457 190 GYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEM--GAILGTALVHMYTKNGAL 267 (818)
Q Consensus 190 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~--~~~~~~~Li~~~~~~g~~ 267 (818)
.|.+...+++|.++|+.|.+. +.-....|...+..+.+.++-++|..++.++++.- +. ........+++-.++|+.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhhcCCc
Confidence 677777777777777777654 23344556666666666666666666666666542 21 334444555566666666
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003457 268 AKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPN 316 (818)
Q Consensus 268 ~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd 316 (818)
+.+..+|+.... +-...|+..+..-.++|+.+.+..+|+++...++.|-
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 666666666553 2345666666666666666767777777666655544
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.30 E-value=7.2e-06 Score=76.58 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 356 YGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 356 ~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
...+...+.+.|++++|.+.|+++ ...| +...+..+...+.+.|++++|...++++++.+|+++..+..++.+|...|
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence 334444444455555555555444 1122 34444444444555555555555555555555555555555555555555
Q ss_pred chHHHHHHHHHH
Q 003457 434 SMKMQLEILLVQ 445 (818)
Q Consensus 434 ~~~eA~~l~~~~ 445 (818)
++++|.+.++..
T Consensus 100 ~~~~A~~~~~~a 111 (135)
T TIGR02552 100 EPESALKALDLA 111 (135)
T ss_pred CHHHHHHHHHHH
Confidence 555555544333
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00016 Score=72.36 Aligned_cols=247 Identities=13% Similarity=0.045 Sum_probs=130.9
Q ss_pred HHhCCChHHHHHHHHHhhc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH-HH
Q 003457 160 YSVSSDLNNARQVFDEIRN--RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLEL-GE 236 (818)
Q Consensus 160 y~~~g~~~~A~~l~~~m~~--~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~-A~ 236 (818)
|.-.|.+..++..-..... .+...-..+.++|...|.+...+.- ... +-.|....+..+......-++.+. ..
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHH
Confidence 3345555555544433322 2333444455666666665443322 221 113333344433333333333332 23
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003457 237 KVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPN 316 (818)
Q Consensus 237 ~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd 316 (818)
.+.+.+.......+......-+..|+..+++++|++...... +....-.-...+.+..+.+-|...+++|++- -+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---de 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ch
Confidence 444445444434443444444556777777777777776632 2333322334455666677777777777653 24
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHH
Q 003457 317 DITFVGVLSACCH----AGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGA 390 (818)
Q Consensus 317 ~~t~~~ll~a~~~----~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~ 390 (818)
..|.+-|..++.+ .+.+..|.-+|+++.++ .+|+..+.+.+..++...|++++|..+++++. ...++.+..+
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5566656665554 23566677777776653 56666666666666677777777777776662 2235566666
Q ss_pred HHHHHHHcCCHHHH-HHHHHHHHhcCCC
Q 003457 391 LLAACKNHGNIEVA-ERVVKEIIALEPN 417 (818)
Q Consensus 391 Li~a~~~~g~~~~A-~~~~~~~~~~~P~ 417 (818)
++..-.+.|.-.++ .+...+.....|.
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 66555555554333 3444555555555
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00035 Score=70.00 Aligned_cols=142 Identities=12% Similarity=0.065 Sum_probs=89.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---
Q 003457 289 ISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR--- 365 (818)
Q Consensus 289 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~--- 365 (818)
...|+..+++++|++...... ..+. ...=...+.+..+.+.|++.+++|.+. .+-.+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~----~lE~--~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE----NLEA--AALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc----hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhc
Confidence 345667777777777666521 1122 222233455666677777777777642 344555556665543
Q ss_pred -cCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 366 -CGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 366 -~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
.+++.+|.-+|++|. ..|...+.+....++...|++++|..++++++..++++++++.+++.+-...|+-.++.+
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 345677777777773 446677777777777777777777777777777777777777777776667776666555
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.29 E-value=5e-05 Score=90.23 Aligned_cols=214 Identities=14% Similarity=0.123 Sum_probs=152.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 003457 180 TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSV-TLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALV 258 (818)
Q Consensus 180 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li 258 (818)
+...|..|+..+...+++++|.++.+..++. .|+.. .|..+...+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 5568999999999999999999999977765 45544 333444456666665555444 2 23
Q ss_pred HHHHhCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003457 259 HMYTKNGALAKAKALFDSMPE--RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVG 336 (818)
Q Consensus 259 ~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A 336 (818)
+......++.....+...|.+ .+-.++..|+.+|-+.|+.++|...|+++++.. +-|....|.+...|... ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 333333344333333334433 244577888999999999999999999999876 33778888888888888 99999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CC---------------------CCHHHHHHHHHH
Q 003457 337 RQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WK---------------------PDVVMWGALLAA 394 (818)
Q Consensus 337 ~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~---------------------pd~~~~~~Li~a 394 (818)
++++.++... |...+++.++.+++.++. .. .-+.++..+-..
T Consensus 169 ~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 169 ITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 9998887765 444445555555555541 11 223445555567
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 395 CKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
|...+++++++++++.+++.+|.|..+...++.+|.
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 788889999999999999999999999999998887
No 128
>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus. These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....
Probab=98.29 E-value=1.6e-05 Score=73.73 Aligned_cols=111 Identities=32% Similarity=0.361 Sum_probs=69.4
Q ss_pred CcccCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEEece---eeeecCCceeccCCCeeEEecCCcc----ceeee
Q 003457 630 NLLLNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSVIGT---VKYIDSKHFYVPKGNAAIEIVSVSA----GIQTA 702 (818)
Q Consensus 630 ~l~~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~---v~~i~~~~~~~~~g~~~~~l~~~~~----~~q~~ 702 (818)
|||.||+||++ .+.+|...|. ...++ .+.|.+++.+.+.+. +.|+.
T Consensus 2 nli~N~~Fe~~----------------------~~~~W~~~~~~~~~~~~~-----~~~g~~~l~v~~~~~~~~~~~~~~ 54 (131)
T PF02018_consen 2 NLIKNGGFEDG----------------------GLSGWSFWGNSGASASVD-----NASGNYSLKVSNRSATWDGQSQQQ 54 (131)
T ss_dssp BSSSSTTSTTT----------------------STTTEEEESSTTEEEEEE-----ECSSSEEEEEECCSSGCGEEEEEE
T ss_pred CEEECCCccCC----------------------CCCCCEEccCCCEEEEEE-----cCCCeEEEEEECCCCCccccceec
Confidence 89999999992 2456887443 23333 228999999877533 23443
Q ss_pred eccccCCCeEEEEEecCcccCccccceEEEEeeCCcce----eeEE-EecccCCceeeeEEEEecc--ceeeEEEEe
Q 003457 703 TTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLVQ----NFTV-QSLGTGSVIKHSVTFKAGS--GSTPISFIS 772 (818)
Q Consensus 703 ~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~f~a~~--~~~~~~f~~ 772 (818)
.....+|++|+++|.+-... . ..+++.+..... .+.. ....+..|..++..|++.. +.++|.|+.
T Consensus 55 ~~~l~~G~~Y~~s~~vk~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ft~~~~~~~~~l~~~~ 126 (131)
T PF02018_consen 55 TISLKPGKTYTVSFWVKADS---G--GTVSVSLRDEDGSPYNWYTGQTVTITGEWTKYSGTFTAPSDDDTVRLYFEI 126 (131)
T ss_dssp EEEE-TTSEEEEEEEEEESS---S--EEEEEEEEESSTTTEEEEEEEEEEETSSEEEEEEEEEEESSCEEEEEEEEE
T ss_pred ceEecCCCEEEEEEEEEeCC---C--CEEEEEEEEcCCCCcEEEEEEEEECCCCcEEEEEEEEECCCCceEEEEEEe
Confidence 22399999999999963322 2 444454433222 2222 2333788999999999995 455666655
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.26 E-value=0.00023 Score=84.01 Aligned_cols=158 Identities=11% Similarity=0.051 Sum_probs=116.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHH
Q 003457 212 FEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAM 288 (818)
Q Consensus 212 ~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~L 288 (818)
.+.+...+..|..+..+.|++++|...++.+.+.. +.+......++..+.+.+++++|...+++..+ .+....+.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 35567777888888888888888888888888774 44556667778888888888888888888775 345567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 003457 289 ISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGK 368 (818)
Q Consensus 289 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~ 368 (818)
..++.+.|++++|+++|+++...+. -+..++..+..++.+.|+.++|...|++..+. ..+...-|+.++ ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~--~~~~~~~~~~~~------~~ 231 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA--IGDGARKLTRRL------VD 231 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--hCcchHHHHHHH------HH
Confidence 8888888999999999998887432 24678888888888889999999999888875 445555555443 23
Q ss_pred HHHHHHHHHHc
Q 003457 369 VLEAEELIKRM 379 (818)
Q Consensus 369 ~~~A~~~~~~m 379 (818)
...-..++++.
T Consensus 232 ~~~~~~~~~~~ 242 (694)
T PRK15179 232 LNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHc
Confidence 33444555555
No 130
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.22 E-value=0.00046 Score=82.21 Aligned_cols=277 Identities=11% Similarity=0.037 Sum_probs=134.0
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003457 78 PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQH-TFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCL 156 (818)
Q Consensus 78 p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~-ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~L 156 (818)
.+...|..|+..|...+++++|.++.+...+ ..|+.. .|-.+.-.+.+.++...+..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~--------------- 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NL--------------- 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------
Confidence 3455566666666666666666666664444 233333 232333344444443333332 11
Q ss_pred HHHHHhCCChHHHHHHHHHhhc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 003457 157 VRCYSVSSDLNNARQVFDEIRN--RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLEL 234 (818)
Q Consensus 157 i~~y~~~g~~~~A~~l~~~m~~--~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~ 234 (818)
+.......++.-...+.+.|.+ .+..++..|+.+|-+.|+.++|..+|+++++.. +-|....+.+...|+.. ++++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 1111222222222222222222 122345556666666666666666666666554 44555555566555555 6666
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC
Q 003457 235 GEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKE-QI 313 (818)
Q Consensus 235 A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~-g~ 313 (818)
|.+++.+++.. |...+++.++.+++.++.+-++.- .+.-..+.+.+... +.
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhcc
Confidence 66665555543 344445556666555555432221 11122222222221 11
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHcCCCCCHHHHHHHH
Q 003457 314 VPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR-CGKVLEAEELIKRMVWKPDVVMWGALL 392 (818)
Q Consensus 314 ~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~-~g~~~~A~~~~~~m~~~pd~~~~~~Li 392 (818)
.--..++..+-..|.+.++++++..+++.+++. .+.|......++.+|.. -++.....+.++..
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~--~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s------------- 284 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEH--DNKNNKAREELIRFYKEKYKDHSLLEDYLKMS------------- 284 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc--CCcchhhHHHHHHHHHHHccCcchHHHHHHHh-------------
Confidence 112233444455667777788888888887764 44455666666666542 11111111111111
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhcCCCCc
Q 003457 393 AACKNH-GNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 393 ~a~~~~-g~~~~A~~~~~~~~~~~P~~~ 419 (818)
..... .++..++.-|++.+..+|.+-
T Consensus 285 -~l~~~~~~~~~~i~~fek~i~f~~G~y 311 (906)
T PRK14720 285 -DIGNNRKPVKDCIADFEKNIVFDTGNF 311 (906)
T ss_pred -ccccCCccHHHHHHHHHHHeeecCCCE
Confidence 12222 456778888888877777653
No 131
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.00011 Score=73.58 Aligned_cols=117 Identities=14% Similarity=0.107 Sum_probs=57.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 003457 323 VLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGN 400 (818)
Q Consensus 323 ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~ 400 (818)
.+....+.|++.+|...+++.... -++|...|+.+.-+|.+.|+.++|..-|.++ ...| +....++|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 444444445555555555444432 3444455555555555555555555444444 2222 24444555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHH
Q 003457 401 IEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 401 ~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l 441 (818)
.+.|..++.++....+.+..+-.+|+.+....|++++|.++
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555554444455555555555555555555553
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.0004 Score=69.14 Aligned_cols=167 Identities=13% Similarity=0.150 Sum_probs=118.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHH---HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003457 254 GTALVHMYTKNGALAKAKALFDSMPERNIATWNA---MISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHA 330 (818)
Q Consensus 254 ~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~---Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 330 (818)
+..++-+...+++.+.|..+++.+..+-+.++.. -...+-..|++++|+++|+.+++.. +-|..++-.-+...-.+
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 3344444555566666666666555422222111 1223455688999999999988875 33566666666666777
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC---CHHHHH
Q 003457 331 GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHG---NIEVAE 405 (818)
Q Consensus 331 g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g---~~~~A~ 405 (818)
|+--+|++-+....+. +..|...|.-+...|...|++++|.-.++++ ...| +...+..+...+.-.| +++-|.
T Consensus 134 GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888888888876 8889999999999999999999999999998 3556 5677777777654433 678899
Q ss_pred HHHHHHHhcCCCCcchHH
Q 003457 406 RVVKEIIALEPNNHGVYV 423 (818)
Q Consensus 406 ~~~~~~~~~~P~~~~~y~ 423 (818)
++|.++++++|.+...+.
T Consensus 212 kyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHhChHhHHHHH
Confidence 999999999996554443
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.21 E-value=1.4e-05 Score=74.70 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003457 352 KIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMY 429 (818)
Q Consensus 352 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l 429 (818)
+......+...+...|++++|.++|+-+ ...| +...|..|.-+|...|++++|+..|.++..++|++++.+..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455566777788999999999999988 3445 6788999999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHHHHHH
Q 003457 430 AEAESMKMQLEILLVQVLF 448 (818)
Q Consensus 430 ~~~G~~~eA~~l~~~~~~l 448 (818)
...|+.++|.+.|+..+.+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999988877533
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.18 E-value=0.001 Score=72.32 Aligned_cols=177 Identities=13% Similarity=0.088 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhc-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 003457 149 DLHVVNCLVRCYSVSSDLNNARQVFDEIRN-RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSV-TLASVLSAC 226 (818)
Q Consensus 149 ~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~-~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~~~ 226 (818)
+...+...+........-..+..++.+..+ .....+.-..-.+...|++++|+..++.+++. .|+.. ........+
T Consensus 273 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~ 350 (484)
T COG4783 273 DFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDIL 350 (484)
T ss_pred cHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 344444444433333333333333333333 23344444445555666666666666666654 33333 333344556
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHH
Q 003457 227 AQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALD 303 (818)
Q Consensus 227 ~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~ 303 (818)
...++.++|.+.++.++... +......-.+.++|.+.|+.++|+++++.... .|+..|..|..+|...|+..++..
T Consensus 351 ~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 351 LEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 66666666666666666653 22244445566666666666666666665543 355566666666666666655544
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003457 304 LFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRV 346 (818)
Q Consensus 304 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~ 346 (818)
...+ .+...|+++.|+..+....+.
T Consensus 430 A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 430 ARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 3332 233445566666555555544
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.15 E-value=0.036 Score=64.58 Aligned_cols=196 Identities=12% Similarity=0.022 Sum_probs=138.7
Q ss_pred HHHHHHHHHhhhhcCCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 48 FAASRLLAFCALSSSGDLSYATRLFNSIQ---SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKA 124 (818)
Q Consensus 48 ~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~---~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~ 124 (818)
..|...+..+.+.|.|+.++|..+++... ..|..+...+-.+|...++.++|..+|++... .-|+.+-...+..+
T Consensus 42 ~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFma 119 (932)
T KOG2053|consen 42 ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMA 119 (932)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHH
Confidence 34555666677789999999999998765 34788999999999999999999999999887 46678888888889
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC----------hHHHHHHHHHhhcCC-HH----HHHHHHH
Q 003457 125 CSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSD----------LNNARQVFDEIRNRT-LN----VWTTMIS 189 (818)
Q Consensus 125 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~----------~~~A~~l~~~m~~~d-~~----~~~~Li~ 189 (818)
|.+.+++.+-.++--++-+. .+-+...+-++++.+...-. +.-|.+.++.+.+.+ .. -...-..
T Consensus 120 yvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 99999888777666666554 33355555566666654321 344667777776554 11 1222233
Q ss_pred HHHHcCChHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003457 190 GYAQSFRANEALMLFDQ-MLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRG 246 (818)
Q Consensus 190 ~~~~~g~~~~A~~l~~~-m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g 246 (818)
.+-..+++++|++++.. ..+.-..-+...-+.-+..+...+++.+..++-.++...+
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 44567889999999943 3333223333334456677788899999999999998886
No 136
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=0.00023 Score=71.39 Aligned_cols=153 Identities=15% Similarity=0.095 Sum_probs=104.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003457 255 TALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAG 331 (818)
Q Consensus 255 ~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 331 (818)
..+...+...|+-+....+...... .|......++....+.|++.+|+..+++..... ++|...++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4455566666666666666655432 344455557777777788888888887777653 456777777777788888
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003457 332 FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWK--PDVVMWGALLAACKNHGNIEVAERVVK 409 (818)
Q Consensus 332 ~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~--pd~~~~~~Li~a~~~~g~~~~A~~~~~ 409 (818)
+.+.|..-|.+..+. ..-+...++.|.-.|.-.|+.+.|..++.+.... -|...-..|.......|++++|+.+..
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 888888777777764 3334566677777777778888888877777322 256666777777777788887777664
Q ss_pred H
Q 003457 410 E 410 (818)
Q Consensus 410 ~ 410 (818)
+
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.0003 Score=76.32 Aligned_cols=117 Identities=19% Similarity=0.158 Sum_probs=88.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHHH
Q 003457 326 ACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD-VVMWGALLAACKNHGNIEV 403 (818)
Q Consensus 326 a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a~~~~g~~~~ 403 (818)
.+...|++++|+..++.+++. .+.|+..+....+.+.+.++.++|.+.++++ ...|+ ...+..+..+|.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 345567788888888887764 5666677777777888888888888888877 34565 5666777778888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHH
Q 003457 404 AERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLV 444 (818)
Q Consensus 404 A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~ 444 (818)
|+..+++....+|+++..|..|+..|.+.|+..+|......
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 88888888888888888888888888888887777775433
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.11 E-value=0.0001 Score=68.76 Aligned_cols=116 Identities=11% Similarity=-0.027 Sum_probs=92.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCC
Q 003457 304 LFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWK 382 (818)
Q Consensus 304 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~ 382 (818)
.|+++....+. +......+...+...|++++|.+.++.+... .+.+...+..+...|.+.|++++|.+.|++. ...
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45555554222 3345666778888999999999999998775 4557888899999999999999999999987 334
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 003457 383 P-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 383 p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y 422 (818)
| +...+..+...+...|++++|++.|+++++..|++....
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 4 577888888899999999999999999999999866533
No 139
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.09 E-value=0.019 Score=63.14 Aligned_cols=393 Identities=11% Similarity=0.109 Sum_probs=216.9
Q ss_pred CCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 003457 44 IQDHFAASRLLAFCALSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTF 120 (818)
Q Consensus 44 ~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ 120 (818)
..|...|+.|++-+ .....+++++.++++.. .....|..-|+.-.+.++++....+|.+....-. +...|..
T Consensus 17 P~di~sw~~lire~---qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREA---QTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHH---ccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 34889999999877 44499999999999873 3567888889999999999999999998776533 4444544
Q ss_pred HHHHHHc-cCChHH----HHHHHHHHH-HcCCCCC-HHHHHHHHHH---------HHhCCChHHHHHHHHHhhcC-----
Q 003457 121 VLKACSN-VRSLNC----CKQIHTHVS-KSGLDLD-LHVVNCLVRC---------YSVSSDLNNARQVFDEIRNR----- 179 (818)
Q Consensus 121 ll~~~~~-~g~~~~----A~~~~~~m~-~~g~~p~-~~~~~~Li~~---------y~~~g~~~~A~~l~~~m~~~----- 179 (818)
-+.--.+ .++... ..+.|+-.+ +.|+.+- ...|+..+.. |....+++..+++++++...
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 4443222 233333 223333333 3344332 2345555543 33345677778888887652
Q ss_pred -----CHHHHHHHHHHHH-------HcCChHHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHHHhcC
Q 003457 180 -----TLNVWTTMISGYA-------QSFRANEALMLFDQMLM--EGFEPNSVT---------------LASVLSACAQSG 230 (818)
Q Consensus 180 -----d~~~~~~Li~~~~-------~~g~~~~A~~l~~~m~~--~g~~pd~~t---------------~~~ll~~~~~~g 230 (818)
|-..|..=|+... +...+..|.++++++.. .|+.-+..+ |..+|.-- +.+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wE-ksN 250 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWE-KSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHH-hcC
Confidence 2223333232221 12345667777766643 233322222 22222211 111
Q ss_pred Chh---------HHHHHHHHHHH-cCCCCcHHHHH-----HHHHHHHhCCCH-------HHHHHHHhhCCC----CChhh
Q 003457 231 CLE---------LGEKVHVFVKM-RGFEMGAILGT-----ALVHMYTKNGAL-------AKAKALFDSMPE----RNIAT 284 (818)
Q Consensus 231 ~~~---------~A~~i~~~~~~-~g~~~~~~~~~-----~Li~~~~~~g~~-------~~A~~~f~~m~~----~d~~~ 284 (818)
-+. ...-++++.+. .+..|+..... ...+.+.+.|+. +++..+++...+ .+...
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 01111121111 12222221111 112233333433 333444443332 22223
Q ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCC-CHHHHHHH
Q 003457 285 WNAMISGLASH---GHAEEALDLFRKLEKE-QIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEP-KIEHYGCM 359 (818)
Q Consensus 285 ~~~Li~~~~~~---g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~L 359 (818)
|..+...--.. +..+.....++++... ...| ..+|..+++...+..-++.|+.+|.++.+. +..+ ++.+++++
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHH
Confidence 33222211111 1245555666666543 2233 345667777777777788888888887776 3334 67777777
Q ss_pred HHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-CcchHHHHHHHHHHhhc
Q 003457 360 VDLLGRCGKVLEAEELIKRM-VWKPD-VVMWGALLAACKNHGNIEVAERVVKEIIAL--EPN-NHGVYVVLSNMYAEAES 434 (818)
Q Consensus 360 i~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~--~P~-~~~~y~~L~~~l~~~G~ 434 (818)
+..|+ +++.+-|.++|+-- +.-+| ...-...++-+.+.++-..+..+|++.+.. .|+ ..+.|..+.+.-..-|+
T Consensus 409 mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 409 MEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 76554 66778888888765 22244 444455666677888888888888888765 333 34778888888888888
Q ss_pred hHHHHHHHHHH
Q 003457 435 MKMQLEILLVQ 445 (818)
Q Consensus 435 ~~eA~~l~~~~ 445 (818)
+..++++-+..
T Consensus 488 L~si~~lekR~ 498 (656)
T KOG1914|consen 488 LNSILKLEKRR 498 (656)
T ss_pred HHHHHHHHHHH
Confidence 88888866555
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=1.4e-05 Score=81.47 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=46.5
Q ss_pred HHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 363 LGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 363 ~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
+.+.+++++|+..|.++ ...| |.+.|..-..+|.+.|.++.|++-.+.+++++|....+|..|+.+|...|++++|++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 34455555555555555 2233 455555555556666666666666666666666656666666666666666666665
Q ss_pred HHHHH
Q 003457 441 ILLVQ 445 (818)
Q Consensus 441 l~~~~ 445 (818)
.++..
T Consensus 171 aykKa 175 (304)
T KOG0553|consen 171 AYKKA 175 (304)
T ss_pred HHHhh
Confidence 54444
No 141
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.97 E-value=0.051 Score=59.92 Aligned_cols=425 Identities=13% Similarity=0.153 Sum_probs=253.1
Q ss_pred CCCCChhHHHHHHHHhcCc--hHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC--CCCHHHHHH
Q 003457 10 QPPLPIPPLSLLADKCKSM--HQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQ--SPNHFMWNT 85 (818)
Q Consensus 10 ~~~p~~~tl~~ll~~c~~~--~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~--~p~~~~yn~ 85 (818)
..|-|..+|..|+.-...- ++.+..++.+.. -+...+..|..-+..- .+.++++..+++|.+.. .-+...|..
T Consensus 15 ~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~-~FP~s~r~W~~yi~~E--l~skdfe~VEkLF~RCLvkvLnlDLW~l 91 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQPIDKVRETYEQLVN-VFPSSPRAWKLYIERE--LASKDFESVEKLFSRCLVKVLNLDLWKL 91 (656)
T ss_pred cCCccHHHHHHHHHHHccCCHHHHHHHHHHHhc-cCCCCcHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence 4567888999999977543 344677776654 3556788888888888 89999999999999876 357778887
Q ss_pred HHHHHHh-CCChhH----HHHHHHHHH-HcCCCCCHH-HHHHHHHH---------HHccCChHHHHHHHHHHHHcCCCCC
Q 003457 86 LIRAQAS-SLNPDK----AIFLYMNMR-RTGFAPNQH-TFTFVLKA---------CSNVRSLNCCKQIHTHVSKSGLDLD 149 (818)
Q Consensus 86 Li~~~~~-~g~~~~----Al~lf~~m~-~~g~~pd~~-ty~~ll~~---------~~~~g~~~~A~~~~~~m~~~g~~p~ 149 (818)
-|+.-.+ +++... ..+.|+-.. +.|+.+-+. .|...+.- +....+++..++++++++...+..=
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 7765443 233332 233343333 334443332 34433333 2334466778888888876533211
Q ss_pred HHHHHH------HHHHH-------HhCCChHHHHHHHHHhhc------CCH---------------HHHHHHHHHHHHcC
Q 003457 150 LHVVNC------LVRCY-------SVSSDLNNARQVFDEIRN------RTL---------------NVWTTMISGYAQSF 195 (818)
Q Consensus 150 ~~~~~~------Li~~y-------~~~g~~~~A~~l~~~m~~------~d~---------------~~~~~Li~~~~~~g 195 (818)
...|+- =|+.. -+..++..|.++++++.. ++. ..|-.+|.-=..++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 122221 11111 123445666666666542 110 12444443221111
Q ss_pred Ch--------HHHHHHHHH-HHHcCCCCCHHHHH-H----HHHHHHhcCC-------hhHHHHHHHHHHHcCCCCcHHHH
Q 003457 196 RA--------NEALMLFDQ-MLMEGFEPNSVTLA-S----VLSACAQSGC-------LELGEKVHVFVKMRGFEMGAILG 254 (818)
Q Consensus 196 ~~--------~~A~~l~~~-m~~~g~~pd~~t~~-~----ll~~~~~~g~-------~~~A~~i~~~~~~~g~~~~~~~~ 254 (818)
-- ....=.+++ |+-.+..|+..... . .-..+...|+ .+++..+++..+..-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 011112222 12223344332111 1 1122333343 45566666666654323334444
Q ss_pred HHHHHHHH---hCCCHHHHHHHHhhCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 003457 255 TALVHMYT---KNGALAKAKALFDSMPE----RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVP-NDITFVGVLSA 326 (818)
Q Consensus 255 ~~Li~~~~---~~g~~~~A~~~f~~m~~----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a 326 (818)
..+.+.-- +.+..+.....++++.. .-.-+|..+|..-.+..-.+.|..+|.++.+.+..+ +...++.++..
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 44333211 11235555566665553 233478888888888899999999999999987777 55666777775
Q ss_pred HHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHHcCCH
Q 003457 327 CCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV---WKPD--VVMWGALLAACKNHGNI 401 (818)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~---~~pd--~~~~~~Li~a~~~~g~~ 401 (818)
+| .++.+.|.++|+.=.++ +..++.--...++-+...++-..|..+|++.. ..|+ ...|..++.--..-|+.
T Consensus 412 ~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 55 68899999999997776 44455566778888899999999999999983 2333 58999999988899999
Q ss_pred HHHHHHHHHHHhcCCCCc----chHHHHHHHHHHhhchHHHHH
Q 003457 402 EVAERVVKEIIALEPNNH----GVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 402 ~~A~~~~~~~~~~~P~~~----~~y~~L~~~l~~~G~~~eA~~ 440 (818)
..++++-++.....|.+. ..-..+++-|.-.+.+..-..
T Consensus 489 ~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 489 NSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred HHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHH
Confidence 999999998888777321 233445556655555544333
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0006 Score=67.89 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=124.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVG-VLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDL 362 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~ 362 (818)
.|..++-+....++.+-|..+++++.+.- |...-... -...+...|++++|+++|+.+.+. .+.|..++-.-+-+
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 45555666778899999999999998873 44332222 223456789999999999999975 46677888877777
Q ss_pred HHHcCCHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh---chHH
Q 003457 363 LGRCGKVLEAEELIKRM--VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE---SMKM 437 (818)
Q Consensus 363 ~~~~g~~~~A~~~~~~m--~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G---~~~e 437 (818)
.-.+|+.-+|++.+.+. ....|...|.-+...|...|++++|.-++++++=++|-++..+..+++++.-.| +++-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 88889988998877766 244689999999999999999999999999999999999999999999988666 3444
Q ss_pred HHHHHHHH
Q 003457 438 QLEILLVQ 445 (818)
Q Consensus 438 A~~l~~~~ 445 (818)
|.+++...
T Consensus 210 arkyy~~a 217 (289)
T KOG3060|consen 210 ARKYYERA 217 (289)
T ss_pred HHHHHHHH
Confidence 55555443
No 143
>PF12854 PPR_1: PPR repeat
Probab=97.95 E-value=1.3e-05 Score=54.82 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 003457 145 GLDLDLHVVNCLVRCYSVSSDLNNARQVFDEI 176 (818)
Q Consensus 145 g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m 176 (818)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 144
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.95 E-value=1.3e-05 Score=64.30 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=46.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 391 LLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 391 Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
+...+.+.|++++|++.|+++++..|+++.++..++.++.+.|++++|.+.++..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667888888888888888888888888888888888888888888888777664
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.93 E-value=0.00029 Score=77.18 Aligned_cols=127 Identities=12% Similarity=0.040 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003457 252 ILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAG 331 (818)
Q Consensus 252 ~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 331 (818)
.....|+..+...++++.|.++|+++.+.++.....++..+...++..+|++++++.++... -+...+..-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence 44456777778889999999999999988777777888899889999999999999987632 25566666667788999
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC
Q 003457 332 FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVW 381 (818)
Q Consensus 332 ~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~ 381 (818)
+++.|+.+.+++.+. .+.+..+|..|+.+|.+.|++++|+..++.++.
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999998874 445577999999999999999999999998863
No 146
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.91 E-value=5.1e-05 Score=83.27 Aligned_cols=103 Identities=11% Similarity=0.078 Sum_probs=70.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCH
Q 003457 324 LSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNI 401 (818)
Q Consensus 324 l~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~ 401 (818)
...+...|++++|++.|+++++. .+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|.+.|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44556667777777777777764 3445666777777777777777777777776 2334 456677777777777777
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003457 402 EVAERVVKEIIALEPNNHGVYVVLSNM 428 (818)
Q Consensus 402 ~~A~~~~~~~~~~~P~~~~~y~~L~~~ 428 (818)
++|+..|+++++++|++..+...+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777766655554433
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.90 E-value=0.00018 Score=61.05 Aligned_cols=90 Identities=22% Similarity=0.203 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 356 YGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 356 ~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
+..+...+...|++++|++.++++ ...| +...+..+...+...+++++|.+.++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 456677788888899998888877 3334 34677778888888899999999999999999988888899999999999
Q ss_pred chHHHHHHHHHH
Q 003457 434 SMKMQLEILLVQ 445 (818)
Q Consensus 434 ~~~eA~~l~~~~ 445 (818)
++++|.+.++..
T Consensus 83 ~~~~a~~~~~~~ 94 (100)
T cd00189 83 KYEEALEAYEKA 94 (100)
T ss_pred hHHHHHHHHHHH
Confidence 999998876655
No 148
>PF12854 PPR_1: PPR repeat
Probab=97.89 E-value=2.2e-05 Score=53.80 Aligned_cols=32 Identities=38% Similarity=0.603 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 348 GIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 348 g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
|+.||..+|+.||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.87 E-value=3.8e-05 Score=62.41 Aligned_cols=63 Identities=22% Similarity=0.286 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh-chHHHHHHHHHHH
Q 003457 384 DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE-SMKMQLEILLVQV 446 (818)
Q Consensus 384 d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G-~~~eA~~l~~~~~ 446 (818)
+...|..+...+.+.|++++|+..|+++++++|+++..|..++.++.+.| ++++|++.++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 8999999766653
No 150
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00054 Score=72.58 Aligned_cols=152 Identities=14% Similarity=0.022 Sum_probs=112.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHH-------------HH
Q 003457 290 SGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIE-------------HY 356 (818)
Q Consensus 290 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~-------------~~ 356 (818)
.++.-.+++++|...--..++.... +......-..++...++.+.+...|++.++ +.|+.. .+
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHH
Confidence 3566778888888877766664221 222222223345566788888888888664 455432 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 357 GCMVDLLGRCGKVLEAEELIKRMV------WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 357 ~~Li~~~~~~g~~~~A~~~~~~m~------~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
..-.+...+.|++.+|.+.|.+.. .+|+...|.....+..+.|+.++|+...+++++++|....+|..-+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 223344568899999999999882 33556778878888889999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHH
Q 003457 431 EAESMKMQLEILLVQ 445 (818)
Q Consensus 431 ~~G~~~eA~~l~~~~ 445 (818)
..++|++|.+-++..
T Consensus 333 ~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999965554
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.00017 Score=65.32 Aligned_cols=101 Identities=16% Similarity=0.099 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCC----HHHHHHHHH
Q 003457 320 FVGVLSACCHAGFIDVGRQIFGSMKRVYGIEP-KIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPD----VVMWGALLA 393 (818)
Q Consensus 320 ~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~Li~ 393 (818)
+..++..+.+.|++++|...+..+.+...-.+ ....+..+..++.+.|++++|++.|+++. ..|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34445555555666666666655554311101 12344445555555555555555555541 1222 234444555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
++.+.|+.++|.+.++++++..|++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 555555555555555555555555443
No 152
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.83 E-value=0.00052 Score=75.21 Aligned_cols=126 Identities=18% Similarity=0.173 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003457 151 HVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSG 230 (818)
Q Consensus 151 ~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g 230 (818)
.....|+..+...++++.|+.+|+++.+.++.....+++.+...++..+|.+++++.++.. +-+...+......|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445666677778888888888888888887777778888888888888888888888653 446566666667777888
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCC
Q 003457 231 CLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMP 278 (818)
Q Consensus 231 ~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~ 278 (818)
+.+.|.++.+++.... +.+..+|..|+.+|.+.|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888764 4555678888888888888888888887766
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00017 Score=73.63 Aligned_cols=108 Identities=14% Similarity=0.081 Sum_probs=89.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHH
Q 003457 325 SACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD-VVMWGALLAACKNHGNIE 402 (818)
Q Consensus 325 ~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a~~~~g~~~ 402 (818)
.-..+.+++++|+..|.+.++. .+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 3467789999999999999974 5567888889999999999999999998887 45565 689999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 403 VAERVVKEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 403 ~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
+|++.|+++++++|++......|-.+-.+.+.
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999988655555444444433
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.74 E-value=0.0016 Score=61.69 Aligned_cols=125 Identities=13% Similarity=0.097 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHH
Q 003457 285 WNAMISGLASHGHAEEALDLFRKLEKEQIVPN--DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK--IEHYGCMV 360 (818)
Q Consensus 285 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~--~~~~~~Li 360 (818)
|..++..+ ..++..++...++++.+....-. ......+...+...|++++|...|+.+... ...++ ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33333333 35666666666666665432211 122223345566666666666666666654 21111 12334455
Q ss_pred HHHHHcCCHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 361 DLLGRCGKVLEAEELIKRMVWK-PDVVMWGALLAACKNHGNIEVAERVVKEI 411 (818)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~m~~~-pd~~~~~~Li~a~~~~g~~~~A~~~~~~~ 411 (818)
..+...|++++|+..++..... .....+..+.+.|...|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5666666666666666554321 22344555555666666666666666654
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.74 E-value=0.00055 Score=61.85 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHH
Q 003457 285 WNAMISGLASHGHAEEALDLFRKLEKEQIV-P-NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEP-KIEHYGCMVD 361 (818)
Q Consensus 285 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-p-d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~Li~ 361 (818)
+..++..+.+.|++++|.+.|+++.+.... + ....+..+..++.+.|+++.|...|+.+.....-.+ ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344445555555555555555555543211 0 122333445555555555555555555544311111 1334445555
Q ss_pred HHHHcCCHHHHHHHHHHc
Q 003457 362 LLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 362 ~~~~~g~~~~A~~~~~~m 379 (818)
++.+.|++++|.+.++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHhCChHHHHHHHHHH
Confidence 555555555555555554
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.001 Score=76.17 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=82.8
Q ss_pred CCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 003457 313 IVPNDITFVGVLSACCHA--G---FIDVGRQIFGSMKRVYGIEPK-IEHYGCMVDLLGRC--------GKVLEAEELIKR 378 (818)
Q Consensus 313 ~~pd~~t~~~ll~a~~~~--g---~~~~A~~~~~~m~~~~g~~p~-~~~~~~Li~~~~~~--------g~~~~A~~~~~~ 378 (818)
.+.+...|...+++.... + +.+.|..+|+++++. .|+ ...|..+..+|... .+..++.+..++
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 445566666666554332 2 256777777777753 444 34444443333221 123444455544
Q ss_pred cC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 379 MV----WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 379 m~----~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.. ...+...|..+.-.+...|++++|...++++++++|+ ...|..++.++...|+.++|.+.++..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 31 2234567777766667788999999999999999985 788889999999999999998866555
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.70 E-value=0.00034 Score=68.37 Aligned_cols=83 Identities=13% Similarity=0.059 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSN 427 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~ 427 (818)
...+..+...|...|++++|...|+++. ..|+ ...+..+...+.+.|++++|+..++++++..|++...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4456677777778888888888887762 2222 3577888888899999999999999999999998888888898
Q ss_pred HHHHhhch
Q 003457 428 MYAEAESM 435 (818)
Q Consensus 428 ~l~~~G~~ 435 (818)
+|...|+.
T Consensus 115 ~~~~~g~~ 122 (172)
T PRK02603 115 IYHKRGEK 122 (172)
T ss_pred HHHHcCCh
Confidence 88887763
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.70 E-value=0.00072 Score=74.20 Aligned_cols=87 Identities=15% Similarity=0.084 Sum_probs=73.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchH
Q 003457 359 MVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMK 436 (818)
Q Consensus 359 Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~ 436 (818)
....+...|++++|++.|+++ ...| +...|..+..+|.+.|++++|+..++++++++|+++.+|..++.+|.+.|+++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 345567889999999999888 3444 57788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 003457 437 MQLEILLVQ 445 (818)
Q Consensus 437 eA~~l~~~~ 445 (818)
+|++.++..
T Consensus 88 eA~~~~~~a 96 (356)
T PLN03088 88 TAKAALEKG 96 (356)
T ss_pred HHHHHHHHH
Confidence 999976554
No 159
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.69 E-value=0.00018 Score=75.74 Aligned_cols=128 Identities=10% Similarity=-0.030 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-------C-CCCH
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMK---RVYGIEP-KIEHYGCMVDLLGRCGKVLEAEELIKRMV-------W-KPDV 385 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~---~~~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-------~-~pd~ 385 (818)
..|..|.+.|.-.|+++.|+..++.-. +.+|..- ....+..|.+++.-.|+++.|.+.|+... . ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456777777777899999998877632 3333332 24678889999999999999999998751 1 1245
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIALE------PNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~------P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
....+|..+|.-..++++|+.++.+-+.+. -....++..|+..|...|..+.|+.+.+.-
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 677788999988899999999997766542 224678899999999999999999865443
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.68 E-value=0.0018 Score=74.27 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=102.1
Q ss_pred CChhhHHHHHHHHHH--c---CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc--------CCHHHHHHHHHHHHH
Q 003457 280 RNIATWNAMISGLAS--H---GHAEEALDLFRKLEKEQIVPN-DITFVGVLSACCHA--------GFIDVGRQIFGSMKR 345 (818)
Q Consensus 280 ~d~~~~~~Li~~~~~--~---g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~--------g~~~~A~~~~~~m~~ 345 (818)
.+...|...+.+... . ++.++|..+|++.++. .|+ ...+..+..++... .++..+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 577788888776443 2 3377899999999986 454 44555444433322 123344444444333
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 003457 346 VYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 346 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y 422 (818)
....+.+...|..+...+...|++++|...|+++ ...|+...|..+...+...|+.++|.+.|+++++++|.++..|
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 2123445678888887788899999999999998 4678889999999999999999999999999999999977544
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.67 E-value=0.00053 Score=66.71 Aligned_cols=94 Identities=10% Similarity=-0.077 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 003457 352 KIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLS 426 (818)
Q Consensus 352 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~ 426 (818)
....+..+...+...|++++|+..|+++. ..|+ ..++..+...+.+.|++++|++.+++++++.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35566777888888999999999998872 2222 357888999999999999999999999999999999899999
Q ss_pred HHHH-------HhhchHHHHHHHHHH
Q 003457 427 NMYA-------EAESMKMQLEILLVQ 445 (818)
Q Consensus 427 ~~l~-------~~G~~~eA~~l~~~~ 445 (818)
.++. +.|++++|...++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 778888777655443
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.65 E-value=8e-05 Score=63.22 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=46.7
Q ss_pred cCCHHHHHHHHHHcC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHH
Q 003457 366 CGKVLEAEELIKRMV-WKP---DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 366 ~g~~~~A~~~~~~m~-~~p---d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l 441 (818)
.|++++|+.+|+++. ..| +...+..+..+|.+.|++++|++++++ .+.+|.+......++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456666666666662 122 334455566667777777777777766 556666556666667777777777777765
Q ss_pred HH
Q 003457 442 LL 443 (818)
Q Consensus 442 ~~ 443 (818)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 163
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.64 E-value=0.0016 Score=61.72 Aligned_cols=122 Identities=13% Similarity=0.043 Sum_probs=92.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCCH----HHHHHH
Q 003457 320 FVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK---IEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPDV----VMWGAL 391 (818)
Q Consensus 320 ~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd~----~~~~~L 391 (818)
|..++..+ ..++...+...++.+.+. .+.+ ......+...+...|++++|.+.|+.+. ..||. .....|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 44444444 478899999999998886 3333 3445567788999999999999999984 22443 355667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 392 LAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 392 i~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
...+...|++++|+..++... -.+-.+..+..++++|.+.|++++|.+.++..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788899999999999997732 33334678889999999999999999977643
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.62 E-value=2.5e-05 Score=63.27 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=41.0
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
...|++++|++.|+++++..|++..++..++.+|.+.|++++|.++++.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788888888888888888888888888888888888888888876655
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.57 E-value=0.0018 Score=63.19 Aligned_cols=131 Identities=15% Similarity=0.122 Sum_probs=92.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 003457 281 NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPN--DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGC 358 (818)
Q Consensus 281 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~ 358 (818)
....+..+...+...|++++|+..|++..+....+. ...+..+..++.+.|++++|...+++..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344667777788888899999998888876543332 356777788888889999999988888764 3345666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 359 MVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 359 Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
+..+|...|+...+..-++.+. ..+++|+++++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 7777888777776664444321 23688899999999999885 5555555554443
No 166
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.57 E-value=0.15 Score=54.12 Aligned_cols=269 Identities=16% Similarity=0.154 Sum_probs=171.5
Q ss_pred hCCChHHHHHHHHHhh---cCCHHHHHHHHH--HHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChhH
Q 003457 162 VSSDLNNARQVFDEIR---NRTLNVWTTMIS--GYAQSFRANEALMLFDQMLMEGFEPNSVT--LASVLSACAQSGCLEL 234 (818)
Q Consensus 162 ~~g~~~~A~~l~~~m~---~~d~~~~~~Li~--~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~~~~~~g~~~~ 234 (818)
-.||-..|.++-.+.. ..|....-.|+. +-.-.|+++.|.+-|+.|... |.... +..|.-...+.|+.+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 3566666666555433 234444444443 234458888888888888742 22211 2223333356788888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-----CChh--hHHHHHHHHH---HcCCHHHHHHH
Q 003457 235 GEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE-----RNIA--TWNAMISGLA---SHGHAEEALDL 304 (818)
Q Consensus 235 A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-----~d~~--~~~~Li~~~~---~~g~~~~A~~l 304 (818)
|.++-+..-... +.-.....+.++..|..|+++.|+++++.-.. ++.. .--.|+.+-. -.-+...|.+.
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 888887777654 33345667788888899999999998886543 3432 1112222111 12346666666
Q ss_pred HHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc----
Q 003457 305 FRKLEKEQIVPNDIT-FVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM---- 379 (818)
Q Consensus 305 ~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m---- 379 (818)
-.+..+. .||..- -.....++.+.|+..++-.+++.+=+ ..|.+..+...+ +.+.|+.. +.-++++
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta--~dRlkRa~~L~ 322 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTA--LDRLKRAKKLE 322 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcH--HHHHHHHHHHH
Confidence 6666553 566433 23345788999999999999998765 467766665444 45666533 2222222
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh-hchHHHHHHHHH
Q 003457 380 VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEA-ESMKMQLEILLV 444 (818)
Q Consensus 380 ~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~-G~~~eA~~l~~~ 444 (818)
..+| +......+..+-...|++..|..--+.+.++.|. ..+|..|+++-... |+-.++...+-.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 2345 5677778888888999999999999999999998 78899999887654 888887774433
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.55 E-value=0.0011 Score=56.01 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC
Q 003457 322 GVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHG 399 (818)
Q Consensus 322 ~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g 399 (818)
.+...+...|++++|...++.+.+. .+.+...+..+...+...+++++|.+.|++. ...| +...+..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 3444445555555555555555442 2223344555555566666666666666554 1222 3345556666666666
Q ss_pred CHHHHHHHHHHHHhcCC
Q 003457 400 NIEVAERVVKEIIALEP 416 (818)
Q Consensus 400 ~~~~A~~~~~~~~~~~P 416 (818)
++++|...+++.++..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66777766666666555
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.55 E-value=0.0081 Score=57.13 Aligned_cols=125 Identities=10% Similarity=0.038 Sum_probs=105.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC---CHHHHH
Q 003457 314 VPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP---DVVMWG 389 (818)
Q Consensus 314 ~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p---d~~~~~ 389 (818)
.|+...-..|..+..+.|++.+|...|++...- -+..|......+.++....+++.+|...++++. ..| ...+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 566666677889999999999999999998764 456788888999999999999999999998873 222 233445
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 390 ALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 390 ~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
.+...+...|+++.|+..|+.+++-.|+ +......+..+.++|+.+||..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 6778889999999999999999999998 8888888999999999999887
No 169
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.52 E-value=0.00014 Score=49.83 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 003457 82 MWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPN 114 (818)
Q Consensus 82 ~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd 114 (818)
+||++|++|++.|++++|.++|++|++.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999887
No 170
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.013 Score=62.54 Aligned_cols=297 Identities=12% Similarity=-0.020 Sum_probs=144.8
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH
Q 003457 89 AQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNN 168 (818)
Q Consensus 89 ~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~ 168 (818)
.+.+..++..|+..+....+.... +..-|..-+..+...++++++.--.++-++.... ........-.++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 344555566666666666654332 2333444444444445555544433333322111 11233333444445555555
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHHcC
Q 003457 169 ARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGF-EPNSVTLASVL-SACAQSGCLELGEKVHVFVKMRG 246 (818)
Q Consensus 169 A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll-~~~~~~g~~~~A~~i~~~~~~~g 246 (818)
|.+.|+ +...+ ....++..++....... +|.-.++..+- .++...++.++|.++--..++..
T Consensus 136 A~~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 136 AEEKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred HHHHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 555554 11111 11223333333322211 23334444333 34456777777777766666553
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 247 FEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSA 326 (818)
Q Consensus 247 ~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 326 (818)
..+......-..++.-..+.+.|...|++...-|+....+- ..-.-.+.++.+.+. .+-
T Consensus 200 -~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk--------~~~~~~k~le~~k~~------------gN~ 258 (486)
T KOG0550|consen 200 -ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSK--------SASMMPKKLEVKKER------------GND 258 (486)
T ss_pred -cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHH--------hHhhhHHHHHHHHhh------------hhh
Confidence 22222211112233334566666666666665333222110 000011112222222 222
Q ss_pred HHHcCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCH
Q 003457 327 CCHAGFIDVGRQIFGSMKRV--YGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVV---MWGALLAACKNHGNI 401 (818)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~--~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~---~~~~Li~a~~~~g~~ 401 (818)
..+.|++..|.++|.+.+.. ....++...|........+.|+.++|+.--+++. +-|.. .+..-..++...+++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888877776632 0123346667777777788888888888877763 22332 333333455667888
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHH
Q 003457 402 EVAERVVKEIIALEPNNHGVYVVLS 426 (818)
Q Consensus 402 ~~A~~~~~~~~~~~P~~~~~y~~L~ 426 (818)
++|.+.|+++.+..-+ .+....|.
T Consensus 338 e~AV~d~~~a~q~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 338 EEAVEDYEKAMQLEKD-CEIRRTLR 361 (486)
T ss_pred HHHHHHHHHHHhhccc-cchHHHHH
Confidence 8888888888887655 44444443
No 171
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.46 E-value=0.00028 Score=57.89 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=47.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 392 LAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 392 i~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
...|.+.+++++|+++++++++++|+++..+..++.++.+.|++++|.+.++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3567888999999999999999999999999999999999999999999776663
No 172
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.44 E-value=0.00019 Score=49.04 Aligned_cols=33 Identities=36% Similarity=0.642 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 003457 81 FMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAP 113 (818)
Q Consensus 81 ~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~p 113 (818)
.+||.+|++|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 173
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.44 E-value=0.28 Score=55.69 Aligned_cols=68 Identities=7% Similarity=0.085 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----CHHHHHHHHHHHHHcCChHHHHHH
Q 003457 129 RSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR-----TLNVWTTMISGYAQSFRANEALML 203 (818)
Q Consensus 129 g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~-----d~~~~~~Li~~~~~~g~~~~A~~l 203 (818)
|++++|++++-++-+++ ..+.++.+.||+-...++++.-... -..+|+.+...++....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555554443332 1244445555555555544432111 112445555555554455555444
Q ss_pred HH
Q 003457 204 FD 205 (818)
Q Consensus 204 ~~ 205 (818)
|.
T Consensus 819 Y~ 820 (1189)
T KOG2041|consen 819 YS 820 (1189)
T ss_pred HH
Confidence 43
No 174
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.41 E-value=0.00026 Score=48.48 Aligned_cols=33 Identities=42% Similarity=0.805 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQIVPN 316 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd 316 (818)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999998887
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00088 Score=53.54 Aligned_cols=61 Identities=20% Similarity=0.227 Sum_probs=51.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003457 359 MVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 359 Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~ 419 (818)
+...+.+.|++++|++.|+++ ...| +...+..+..++.+.|++++|+..|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 566788999999999999998 4456 478888899999999999999999999999999864
No 176
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.35 E-value=0.3 Score=52.05 Aligned_cols=312 Identities=14% Similarity=0.105 Sum_probs=178.9
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHh--CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHccCChHHHHHHHH
Q 003457 64 DLSYATRLFNSIQSPNHFMWNTLIRAQAS--SLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKA--CSNVRSLNCCKQIHT 139 (818)
Q Consensus 64 ~~e~A~~lf~~~~~p~~~~yn~Li~~~~~--~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~--~~~~g~~~~A~~~~~ 139 (818)
....+.+.|..-. --..|.+|-.++.. .|+-..|.++-.+..+. +.-|......++.+ ..-.|+++.|++-|+
T Consensus 68 sP~t~~Ryfr~rK--RdrgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 68 SPYTARRYFRERK--RDRGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred CcHHHHHHHHHHH--hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 3445555555432 22345566555544 45666666665554432 34455555555554 334578888888888
Q ss_pred HHHHcCCCCCHH--HHHHHHHHHHhCCChHHHHHHHHHhhcCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CC
Q 003457 140 HVSKSGLDLDLH--VVNCLVRCYSVSSDLNNARQVFDEIRNRT---LNVWTTMISGYAQSFRANEALMLFDQMLMEG-FE 213 (818)
Q Consensus 140 ~m~~~g~~p~~~--~~~~Li~~y~~~g~~~~A~~l~~~m~~~d---~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~ 213 (818)
.|+.. |... -...|.----+.|+.+.|.++-++....- .-.+...+...+..|+|+.|+++++.-++.. +.
T Consensus 145 AMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 87652 1111 11222222345777777777776665432 2256777778888888888888887765432 33
Q ss_pred CCHHH--HHHHHHHH--Hh-cCChhHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhCCCHHHHHHHHhhCCC--CChhhH
Q 003457 214 PNSVT--LASVLSAC--AQ-SGCLELGEKVHVFVKMRGFEMGAI-LGTALVHMYTKNGALAKAKALFDSMPE--RNIATW 285 (818)
Q Consensus 214 pd~~t--~~~ll~~~--~~-~g~~~~A~~i~~~~~~~g~~~~~~-~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d~~~~ 285 (818)
++..- -..|+.+- .. ..+...|...-.+..+. .|+.. .-..-..++.+.|++.++-.+++.+-+ |.+..+
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia 299 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA 299 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH
Confidence 34321 12233221 11 22344555555555544 33321 222345677888888888888887765 444333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003457 286 NAMISGLASHGHAEEALDLFRKLEK-EQIVPN-DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLL 363 (818)
Q Consensus 286 ~~Li~~~~~~g~~~~A~~l~~~m~~-~g~~pd-~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~ 363 (818)
..|....--+.+++-+++..+ ..++|| ......+..+-...|++..|..--+...+ ..|....|..|.+.-
T Consensus 300 ----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r---~~pres~~lLlAdIe 372 (531)
T COG3898 300 ----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR---EAPRESAYLLLADIE 372 (531)
T ss_pred ----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh---hCchhhHHHHHHHHH
Confidence 334443333444555554433 224554 45555667777888888888877666653 578888888888776
Q ss_pred HH-cCCHHHHHHHHHHcCCCCCHHHHHH
Q 003457 364 GR-CGKVLEAEELIKRMVWKPDVVMWGA 390 (818)
Q Consensus 364 ~~-~g~~~~A~~~~~~m~~~pd~~~~~~ 390 (818)
.. .|+-.++...+-+....|....|..
T Consensus 373 eAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 373 EAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred hhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 54 5999999999888754555445544
No 177
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.31 E-value=0.00086 Score=56.82 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003457 296 GHAEEALDLFRKLEKEQIV-PNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEE 374 (818)
Q Consensus 296 g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~ 374 (818)
|++++|+.+++++.+.... ++...+..+..+|.+.|++++|..++++ .+. .+.+......+..+|.+.|++++|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4455555555555443221 1222233344445555555555555444 111 01112233333444444555555544
Q ss_pred HHH
Q 003457 375 LIK 377 (818)
Q Consensus 375 ~~~ 377 (818)
.|+
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 444
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.31 E-value=0.0067 Score=57.03 Aligned_cols=91 Identities=11% Similarity=0.084 Sum_probs=62.9
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003457 256 ALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGF 332 (818)
Q Consensus 256 ~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 332 (818)
.+...+...|++++|.++|+.+.. .+..-|..|..++-..|++++|+..|.......+ -|+..+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 445556667777777777776654 3455667777777777777777777777776653 356667777777777777
Q ss_pred HHHHHHHHHHHHHHh
Q 003457 333 IDVGRQIFGSMKRVY 347 (818)
Q Consensus 333 ~~~A~~~~~~m~~~~ 347 (818)
.+.|++.|+..+...
T Consensus 119 ~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 119 VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777776653
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.30 E-value=0.016 Score=61.45 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=10.6
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 003457 188 ISGYAQSFRANEALMLFDQM 207 (818)
Q Consensus 188 i~~~~~~g~~~~A~~l~~~m 207 (818)
...|-..+++++|.+.|.+.
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 34555556666666655554
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.11 Score=58.86 Aligned_cols=187 Identities=13% Similarity=0.171 Sum_probs=110.4
Q ss_pred CCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 003457 163 SSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGF--EPNSVTLASVLSACAQSGCLELGEKVHV 240 (818)
Q Consensus 163 ~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~~~~~~g~~~~A~~i~~ 240 (818)
-|++++|+++|-++.++|.. +..+.+.|+|-...++++.-- .+. ..-...++.+...+.....+++|.++|.
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999988888753 455666677766666654310 000 1113467777777777778888888776
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003457 241 FVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITF 320 (818)
Q Consensus 241 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 320 (818)
.-... ...+++|.+..++++-+.+-+.+.+ |....-.|...+.+.|.-++|.+.|-+-- .|.
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk---- 882 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK---- 882 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH----
Confidence 65432 2356777777777776666666554 33445556677777777777776654321 111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHH--------------HHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 321 VGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEH--------------YGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 321 ~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~--------------~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
..+..|...+++.+|.++-+... + |.+.+ ..--|..+.+.|++-+|.+++.+|
T Consensus 883 -aAv~tCv~LnQW~~avelaq~~~----l-~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qm 949 (1189)
T KOG2041|consen 883 -AAVHTCVELNQWGEAVELAQRFQ----L-PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQM 949 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcc----c-hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHH
Confidence 23455666666666655443311 0 11100 112345567777777777777666
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.25 E-value=0.011 Score=62.66 Aligned_cols=132 Identities=17% Similarity=0.229 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003457 283 ATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSA-CCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVD 361 (818)
Q Consensus 283 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~ 361 (818)
.+|-.++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 367788888888888999999999998543 2234445444443 33357777799999999987 6777888999999
Q ss_pred HHHHcCCHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 362 LLGRCGKVLEAEELIKRMV-WKPDV----VMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 362 ~~~~~g~~~~A~~~~~~m~-~~pd~----~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
.+.+.++.+.|..+|++.. .-+.. ..|...+.--.+.|+.+....+.+++.+..|+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999984 22333 58899998888999999999999999998887
No 182
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.24 E-value=0.45 Score=51.80 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=51.9
Q ss_pred CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 384 DVVMWGALLAA--CKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 384 d~~~~~~Li~a--~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+...-|.|.++ +..+|++.++.-.-.-..++.| ++.+|..+|.++....+|+||..++..+
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 45566777765 4679999999998888999999 6999999999999999999999977543
No 183
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.20 E-value=0.0074 Score=58.62 Aligned_cols=63 Identities=14% Similarity=0.043 Sum_probs=33.9
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003457 283 ATWNAMISGLASHGHAEEALDLFRKLEKEQIVPN--DITFVGVLSACCHAGFIDVGRQIFGSMKR 345 (818)
Q Consensus 283 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~~~~~~m~~ 345 (818)
..|..+...+...|++++|+..|++.......+. ..++..+..++...|++++|+..+++..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555555566666666666666554422221 23455555555566666666666655554
No 184
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.20 E-value=0.00064 Score=46.34 Aligned_cols=33 Identities=30% Similarity=0.629 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 003457 283 ATWNAMISGLASHGHAEEALDLFRKLEKEQIVP 315 (818)
Q Consensus 283 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 315 (818)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 468888888888888888888888888887776
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.013 Score=62.09 Aligned_cols=152 Identities=9% Similarity=-0.030 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----hCCCCCHHH
Q 003457 285 WNAMISGLASHGHAEEALDLFRKLE----KEQIVP-NDITFVGVLSACCHAGFIDVGRQIFGSMKRV----YGIEPKIEH 355 (818)
Q Consensus 285 ~~~Li~~~~~~g~~~~A~~l~~~m~----~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~----~g~~p~~~~ 355 (818)
|..|...|.-.|+++.|+..-++-+ +-|-+. ....+..+.+++.-.|+++.|.+.|+..... ..-......
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 3444444445566666655433211 122111 1245666777777777777777777663321 011223455
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CC-Ccch
Q 003457 356 YGCMVDLLGRCGKVLEAEELIKRMV--------WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALE-----PN-NHGV 421 (818)
Q Consensus 356 ~~~Li~~~~~~g~~~~A~~~~~~m~--------~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~-----P~-~~~~ 421 (818)
..+|.+.|.-..++++|+.++++-. ..-....+.+|..++...|..++|+.+.++.+++. |. ....
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTa 357 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTA 357 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhh
Confidence 6677777777778888887776531 11235677888888888999999988887766532 21 2334
Q ss_pred HHHHHHHHHHhhchH
Q 003457 422 YVVLSNMYAEAESMK 436 (818)
Q Consensus 422 y~~L~~~l~~~G~~~ 436 (818)
..+|.+.....|.-+
T Consensus 358 r~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 358 RDNLSDLILELGQED 372 (639)
T ss_pred hhhhHHHHHHhCCCc
Confidence 455555555555543
No 186
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.17 E-value=0.86 Score=53.65 Aligned_cols=422 Identities=11% Similarity=0.052 Sum_probs=221.5
Q ss_pred CCCCCCCChhHHHHHHHHhc--CchHH---HHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC--CC
Q 003457 7 SLRQPPLPIPPLSLLADKCK--SMHQL---KQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQS--PN 79 (818)
Q Consensus 7 ~~~~~~p~~~tl~~ll~~c~--~~~~~---~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~--p~ 79 (818)
.+.+-.|| ..|+.++.+.. +.+.. -.+.+.....+.. |..+...+...| .+.++.++|..+|++..+ |+
T Consensus 34 kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y--~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 34 KLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVY--RDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHH--HHHhhhhHHHHHHHHHHhhCCc
Confidence 34455677 46777777763 22322 3333333333322 778888888888 999999999999999985 66
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------ChHHHHHHHHHHHHcC-CCC
Q 003457 80 HFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVR----------SLNCCKQIHTHVSKSG-LDL 148 (818)
Q Consensus 80 ~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g----------~~~~A~~~~~~m~~~g-~~p 148 (818)
..-...+..+|++.+.+.+-.+.--+|-+. ..-+...|=.+++...+.. -+.-|.+..+.+++.+ ..-
T Consensus 110 eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~ 188 (932)
T KOG2053|consen 110 EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIE 188 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccc
Confidence 666666777888888776544333333332 2223444444455443321 1234666666666654 221
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHH-hhc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-H
Q 003457 149 DLHVVNCLVRCYSVSSDLNNARQVFDE-IRN----RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLAS-V 222 (818)
Q Consensus 149 ~~~~~~~Li~~y~~~g~~~~A~~l~~~-m~~----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-l 222 (818)
+..-.......+...++.++|.+++.. ..+ .+...-+.-+..+...++|++..++-.++...|. -|-.+|.- +
T Consensus 189 s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~-Ddy~~~~~sv 267 (932)
T KOG2053|consen 189 SEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN-DDYKIYTDSV 267 (932)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC-cchHHHHHHH
Confidence 222222233445578889999999832 222 2444555667777888899999888888888752 22112111 1
Q ss_pred HHHHHhc------------CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---hCCCHHHHHHHH-hhCCC-----CC
Q 003457 223 LSACAQS------------GCLELGEKVHVFVKMRGFEMGAILGTALVHMYT---KNGALAKAKALF-DSMPE-----RN 281 (818)
Q Consensus 223 l~~~~~~------------g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~---~~g~~~~A~~~f-~~m~~-----~d 281 (818)
-.++... +..+...+...+.+... ..++ |-+-+.++. .-|+.+++.-.| ++.-. .|
T Consensus 268 ~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rgp--~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~D 344 (932)
T KOG2053|consen 268 FKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRGP--YLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAID 344 (932)
T ss_pred HHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccCc--HHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhh
Confidence 1111111 11122222122211110 1111 222222222 335655543322 22211 01
Q ss_pred h-------------------------hh--------HHHHHHHHHHcC-----CHHHHHHHHHHHH---HcC------CC
Q 003457 282 I-------------------------AT--------WNAMISGLASHG-----HAEEALDLFRKLE---KEQ------IV 314 (818)
Q Consensus 282 ~-------------------------~~--------~~~Li~~~~~~g-----~~~~A~~l~~~m~---~~g------~~ 314 (818)
. .+ +...+....-.| .-+.-..++++.. ++| .-
T Consensus 345 l~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll 424 (932)
T KOG2053|consen 345 LNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLL 424 (932)
T ss_pred HHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccccccccc
Confidence 1 00 111111111112 1233344444332 223 22
Q ss_pred CCHH---------HHHHHHHHHHHcCCHH---HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCC
Q 003457 315 PNDI---------TFVGVLSACCHAGFID---VGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWK 382 (818)
Q Consensus 315 pd~~---------t~~~ll~a~~~~g~~~---~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~ 382 (818)
|+.. +.+.|+..|.+.++.. +|+-+++..... -+.|..+-..+++.|.-.|-...|.++|+.+.++
T Consensus 425 ~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK 502 (932)
T KOG2053|consen 425 PTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK 502 (932)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH
Confidence 3332 2345677888888765 455555555443 3456667778899999999999999999999543
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 383 ---PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 383 ---pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
-|..-|.. ..-+...|++..+...+...+...-++..=-..++..-.|.|.|..-.+
T Consensus 503 ~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~e 562 (932)
T KOG2053|consen 503 NIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPE 562 (932)
T ss_pred HhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHH
Confidence 33333322 2335567888888888877766543322212223333346676666555
No 187
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.011 Score=61.06 Aligned_cols=98 Identities=13% Similarity=0.064 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHH-cC--CHHHHHHHHHHHHhcCCCCcchHH
Q 003457 349 IEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWK-PDVVMWGALLAACKN-HG--NIEVAERVVKEIIALEPNNHGVYV 423 (818)
Q Consensus 349 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~Li~a~~~-~g--~~~~A~~~~~~~~~~~P~~~~~y~ 423 (818)
.+-|...|-.|...|.+.|+...|..-|.++ ... ++...+..+..++.. .| ...++.++++++++.+|++..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4567788888888888888888888888877 333 356666666666543 22 467778888888888888888888
Q ss_pred HHHHHHHHhhchHHHHHHHHHHH
Q 003457 424 VLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 424 ~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
.|+..+...|++++|....+++.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 88888888888888888777774
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.12 E-value=0.021 Score=59.06 Aligned_cols=172 Identities=8% Similarity=0.024 Sum_probs=100.6
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCC--CCh-h---hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 003457 257 LVHMYTKNGALAKAKALFDSMPE--RNI-A---TWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCH- 329 (818)
Q Consensus 257 Li~~~~~~g~~~~A~~~f~~m~~--~d~-~---~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~- 329 (818)
....+.+.|++++|.+.|+++.. |+. . ..-.++.+|.+.+++++|...+++.++..+.-...-+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34445566777777777776664 221 1 1234556677778888888888887775443223333333333221
Q ss_pred -cC---------------C---HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHH
Q 003457 330 -AG---------------F---IDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGA 390 (818)
Q Consensus 330 -~g---------------~---~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~ 390 (818)
.+ | ...|...|+.++++ |=...-..+|.+.+..+..+--.. -..
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~-e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKY-ELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHH-HHH
Confidence 11 1 12344445555543 222222334443333332110001 113
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 391 LLAACKNHGNIEVAERVVKEIIALEPNN---HGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 391 Li~a~~~~g~~~~A~~~~~~~~~~~P~~---~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+..-|.+.|++..|+.-++.+++.-|+. .+++..++..|.+.|..++|.+.....
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4556889999999999999999988874 567888999999999999999876655
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.10 E-value=0.033 Score=59.15 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=20.8
Q ss_pred CHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 003457 64 DLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRR 108 (818)
Q Consensus 64 ~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~ 108 (818)
++++|..+|++ ....|...+++++|.+.|.+..+
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~ 63 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAAD 63 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHH
Confidence 55555555543 36667777777777777776543
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.07 E-value=0.22 Score=51.53 Aligned_cols=65 Identities=9% Similarity=-0.066 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003457 180 TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNS-VTL---ASVLSACAQSGCLELGEKVHVFVKMRG 246 (818)
Q Consensus 180 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~---~~ll~~~~~~g~~~~A~~i~~~~~~~g 246 (818)
+...+......+.+.|++++|.+.|+++...- |+. ... ..+..++.+.+++++|...+++.++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 33334444555566677777777777776642 222 221 234455666777777777777776653
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.06 E-value=0.0018 Score=52.32 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCC
Q 003457 352 KIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHG-NIEVAERVVKEIIALEP 416 (818)
Q Consensus 352 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g-~~~~A~~~~~~~~~~~P 416 (818)
+...|..+...+.+.|++++|+..|+++ ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567788888888889999999888887 3345 4778888888888988 69999999999998887
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.05 E-value=0.12 Score=49.50 Aligned_cols=99 Identities=16% Similarity=0.058 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-----CChhhHHH
Q 003457 213 EPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE-----RNIATWNA 287 (818)
Q Consensus 213 ~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~~~ 287 (818)
.|+...-..|..++...|+..+|...|++...--+.-|..+...+.++....++...|...++++.+ +.+.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444445555555555555555555555433333444444444555555555555555544433 12223333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 003457 288 MISGLASHGHAEEALDLFRKLEKE 311 (818)
Q Consensus 288 Li~~~~~~g~~~~A~~l~~~m~~~ 311 (818)
+...|...|++.+|+..|+.....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh
Confidence 444455555555555555554443
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.02 E-value=0.0089 Score=54.15 Aligned_cols=84 Identities=21% Similarity=0.153 Sum_probs=64.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcC---CCC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHH
Q 003457 358 CMVDLLGRCGKVLEAEELIKRMV---WKP-D-VVMWGALLAACKNHGNIEVAERVVKEIIALEPN---NHGVYVVLSNMY 429 (818)
Q Consensus 358 ~Li~~~~~~g~~~~A~~~~~~m~---~~p-d-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~---~~~~y~~L~~~l 429 (818)
.+..++-..|+.++|+.+|++.. ... + ...+-.+...+...|++++|+.++++.....|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 45566777888888888888772 111 1 346667778888899999999999888888787 666677778888
Q ss_pred HHhhchHHHHHH
Q 003457 430 AEAESMKMQLEI 441 (818)
Q Consensus 430 ~~~G~~~eA~~l 441 (818)
...|+.+||++.
T Consensus 86 ~~~gr~~eAl~~ 97 (120)
T PF12688_consen 86 YNLGRPKEALEW 97 (120)
T ss_pred HHCCCHHHHHHH
Confidence 889999998883
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.00 E-value=0.15 Score=57.33 Aligned_cols=176 Identities=18% Similarity=0.154 Sum_probs=85.0
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 003457 137 IHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNS 216 (818)
Q Consensus 137 ~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 216 (818)
-++++.+.|-.|+... +...++-.|++.+|.++|.+- |.-..|+++|..|+--
T Consensus 622 EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~------------------G~enRAlEmyTDlRMF------ 674 (1081)
T KOG1538|consen 622 ELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS------------------GHENRALEMYTDLRMF------ 674 (1081)
T ss_pred HHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc------------------CchhhHHHHHHHHHHH------
Confidence 3456666776666543 445566778888888887654 4444455555444311
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHc--CC-CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 003457 217 VTLASVLSACAQSGCLELGEKVHVFVKMR--GF-EMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLA 293 (818)
Q Consensus 217 ~t~~~ll~~~~~~g~~~~A~~i~~~~~~~--g~-~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~ 293 (818)
-...-+...|..++-..+.++-.+- .+ +| .+..+++...|+.++|..+ +.
T Consensus 675 ----D~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP-----kaAAEmLiSaGe~~KAi~i------------------~~ 727 (1081)
T KOG1538|consen 675 ----DYAQEFLGSGDPKEKKMLIRKRADWARNIKEP-----KAAAEMLISAGEHVKAIEI------------------CG 727 (1081)
T ss_pred ----HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-----HHHHHHhhcccchhhhhhh------------------hh
Confidence 0111122223322222222211110 00 11 1233445555665555443 23
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003457 294 SHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAE 373 (818)
Q Consensus 294 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 373 (818)
.+|-.+-++++-+++... +..+...+...+.+...+..|.++|.+|-.. .+++++....++|.+|.
T Consensus 728 d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAF 793 (1081)
T KOG1538|consen 728 DHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAF 793 (1081)
T ss_pred cccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhH
Confidence 334444444444443322 3334444444445555666666666665321 24556666677777777
Q ss_pred HHHHHcC
Q 003457 374 ELIKRMV 380 (818)
Q Consensus 374 ~~~~~m~ 380 (818)
.+-++.+
T Consensus 794 alAe~hP 800 (1081)
T KOG1538|consen 794 ALAEKHP 800 (1081)
T ss_pred hhhhhCc
Confidence 7766663
No 195
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.99 E-value=0.0012 Score=53.20 Aligned_cols=61 Identities=21% Similarity=0.308 Sum_probs=32.6
Q ss_pred HcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 365 RCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 365 ~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
+.|++++|++.|+++ ...| +...+..++.+|.+.|++++|.++++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 455556666666555 2223 445555555566666666666666666666666554444333
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.98 E-value=0.0043 Score=64.70 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCC----HHHHHHHH
Q 003457 319 TFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEP-KIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPD----VVMWGALL 392 (818)
Q Consensus 319 t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~Li 392 (818)
.|...+....+.|++++|...|+.+++.+.-.+ ....+..+...|...|++++|...|+++. ..|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344433333455666666666666665421111 02345555666666666666666666652 1122 33444445
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003457 393 AACKNHGNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 393 ~a~~~~g~~~~A~~~~~~~~~~~P~~~ 419 (818)
..+...|+.++|...|+++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 555566666666666666666666533
No 197
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.95 E-value=0.00051 Score=46.97 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=31.6
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 407 VVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 407 ~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
+|+++++++|+++.+|+.|+.+|.+.|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999963
No 198
>PRK15331 chaperone protein SicA; Provisional
Probab=96.94 E-value=0.01 Score=56.12 Aligned_cols=89 Identities=11% Similarity=0.022 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhch
Q 003457 358 CMVDLLGRCGKVLEAEELIKRMV-WK-PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESM 435 (818)
Q Consensus 358 ~Li~~~~~~g~~~~A~~~~~~m~-~~-pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~ 435 (818)
....-+...|++++|..+|+-+. .. -+...|..|..+|-..+++++|+..|..+..+.++++..+...+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 44445678999999999998873 22 36777888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 003457 436 KMQLEILLVQV 446 (818)
Q Consensus 436 ~eA~~l~~~~~ 446 (818)
++|.+.+...+
T Consensus 122 ~~A~~~f~~a~ 132 (165)
T PRK15331 122 AKARQCFELVN 132 (165)
T ss_pred HHHHHHHHHHH
Confidence 99999877663
No 199
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.94 E-value=0.00081 Score=44.69 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 003457 82 MWNTLIRAQASSLNPDKAIFLYMNMRRTGF 111 (818)
Q Consensus 82 ~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~ 111 (818)
+||.||++|++.|++++|.++|++|++.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887653
No 200
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.91 E-value=0.11 Score=56.46 Aligned_cols=159 Identities=17% Similarity=0.095 Sum_probs=98.9
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003457 256 ALVHMYTKNGALAKAKALFDSMPER-------NIATWNAMISGLAS---HGHAEEALDLFRKLEKEQIVPNDITFVGVLS 325 (818)
Q Consensus 256 ~Li~~~~~~g~~~~A~~~f~~m~~~-------d~~~~~~Li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 325 (818)
.|+-.|....+++...++++.+... ....-...+.++.+ .|+.++|++++..+......++..+|..+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455566677777777777766652 11222233445555 6788888888888665555667777777776
Q ss_pred HHHHc---------CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH----HHHHH---HHc-------CCC
Q 003457 326 ACCHA---------GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLE----AEELI---KRM-------VWK 382 (818)
Q Consensus 326 a~~~~---------g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~----A~~~~---~~m-------~~~ 382 (818)
.|-.. ...++|...|.+.- .+.||...--.++..+...|...+ ..++- ..+ ...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 65431 23566777776644 345655444444444444443222 22222 111 122
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 383 PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 383 pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
.|.+.+.+++.++.-.|++++|.+.++++.++.|.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 56778888999999999999999999999999877
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.88 E-value=0.029 Score=62.70 Aligned_cols=262 Identities=16% Similarity=0.138 Sum_probs=138.4
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 003457 113 PNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYA 192 (818)
Q Consensus 113 pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~ 192 (818)
|....+.+-+.-+...|.+++|.++-. +-....-|.-|..-....=+++-|++.|.++..
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iac------lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRd-------------- 613 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIAC------LGVTDTDWRELAMEALEALDFETARKAYIRVRD-------------- 613 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccc------cceecchHHHHHHHHHhhhhhHHHHHHHHHHhc--------------
Confidence 334444455555666677766655421 111222344444444444555555555554432
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 003457 193 QSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKA 272 (818)
Q Consensus 193 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 272 (818)
-.+-+.+.-+++|++.|-.|+... +...|+-.|++.+|.++|.+--.. +..+++|.....++.|.+
T Consensus 614 --l~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE 679 (1081)
T KOG1538|consen 614 --LRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQE 679 (1081)
T ss_pred --cHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHH
Confidence 233445556777888887677653 345566778888887777543221 223445555555555555
Q ss_pred HHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH--cCC-CCCHHHHHH---------HHHHHHHcCCHHHHHHHH
Q 003457 273 LFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEK--EQI-VPNDITFVG---------VLSACCHAGFIDVGRQIF 340 (818)
Q Consensus 273 ~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~--~g~-~pd~~t~~~---------ll~a~~~~g~~~~A~~~~ 340 (818)
++..- ..++-..+.++--+ ..+ .|-. .-.. .+..+...|=.+.+.++-
T Consensus 680 ~~~~g-------------------~~~eKKmL~RKRA~WAr~~kePka-AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~ 739 (1081)
T KOG1538|consen 680 FLGSG-------------------DPKEKKMLIRKRADWARNIKEPKA-AAEMLISAGEHVKAIEICGDHGWVDMLIDIA 739 (1081)
T ss_pred HhhcC-------------------ChHHHHHHHHHHHHHhhhcCCcHH-HHHHhhcccchhhhhhhhhcccHHHHHHHHH
Confidence 44322 22222222211100 000 1110 0000 111222223233333332
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 341 GSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 341 ~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
+++- ..+..+...+...+.+...+.-|-++|++|... ..+.+.....+++++|..+.++.-+..|+
T Consensus 740 rkld-----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~d--- 805 (1081)
T KOG1538|consen 740 RKLD-----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDD--- 805 (1081)
T ss_pred hhcc-----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH------HHHhhheeecccchHhHhhhhhCcccccc---
Confidence 2221 234456666666677788889999999999632 34566677899999999988877666665
Q ss_pred hHHHHHHHHHHhhchHHHHHHH
Q 003457 421 VYVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 421 ~y~~L~~~l~~~G~~~eA~~l~ 442 (818)
.|.-.+.-++...+++||.+.+
T Consensus 806 Vy~pyaqwLAE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 806 VYMPYAQWLAENDRFEEAQKAF 827 (1081)
T ss_pred ccchHHHHhhhhhhHHHHHHHH
Confidence 5666666666666666666644
No 202
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.019 Score=61.54 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRM-V-WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m-~-~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
..+++.|.-+|.+.+++.+|++.-++. . ..+|...+..-..+|...|+++.|+..|++++++.|+|..+...|..+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 457788999999999999999998887 2 34578888888999999999999999999999999999999999999999
Q ss_pred HhhchHHHHH-HHHHH
Q 003457 431 EAESMKMQLE-ILLVQ 445 (818)
Q Consensus 431 ~~G~~~eA~~-l~~~~ 445 (818)
+..++.+..+ ++..|
T Consensus 337 k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9888888766 77777
No 203
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.84 E-value=0.94 Score=48.70 Aligned_cols=118 Identities=17% Similarity=0.219 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 003457 255 TALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFID 334 (818)
Q Consensus 255 ~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 334 (818)
+..+.-+...|+...|.++-.+..=|+-.-|...+.+|+..++|++-..+... ++ .+.-|-.++.+|.+.|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHHHCCCHH
Confidence 33455566778888888888888778888888888888888888876665432 11 2356777788888888888
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHH
Q 003457 335 VGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALL 392 (818)
Q Consensus 335 ~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li 392 (818)
+|..+..++. +..-+.+|.++|++.+|.+.--+.+ |...+..+.
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~ 298 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQIL 298 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHH
Confidence 8887766521 2456677888888888877655543 444444443
No 204
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.82 E-value=0.014 Score=51.14 Aligned_cols=81 Identities=15% Similarity=0.136 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHHHHcCCCCCHHH
Q 003457 82 MWNTLIRAQASSLNPDKAIFLYMNMRRTGF-APNQHTFTFVLKACSNVR--------SLNCCKQIHTHVSKSGLDLDLHV 152 (818)
Q Consensus 82 ~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~-~pd~~ty~~ll~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~ 152 (818)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 899999999999877653 34567788999999999999999
Q ss_pred HHHHHHHHHh
Q 003457 153 VNCLVRCYSV 162 (818)
Q Consensus 153 ~~~Li~~y~~ 162 (818)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.78 E-value=0.046 Score=49.56 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHH
Q 003457 286 NAMISGLASHGHAEEALDLFRKLEKEQIVPN--DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEP-KIEHYGCMVDL 362 (818)
Q Consensus 286 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~Li~~ 362 (818)
..+..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..++++....+.-.+ +......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3456677788999999999999988877654 34566677888889999999999988876521101 22333334456
Q ss_pred HHHcCCHHHHHHHHHHc
Q 003457 363 LGRCGKVLEAEELIKRM 379 (818)
Q Consensus 363 ~~~~g~~~~A~~~~~~m 379 (818)
+...|+.++|++.+-..
T Consensus 85 L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 77888888888877554
No 206
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.77 E-value=0.62 Score=50.07 Aligned_cols=271 Identities=12% Similarity=0.116 Sum_probs=150.6
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHH-HHHHHHHHHHHcC
Q 003457 117 TFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLN-VWTTMISGYAQSF 195 (818)
Q Consensus 117 ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~-~~~~Li~~~~~~g 195 (818)
+|..+.......|+.+.|..+++ .+|... .-+..+.+.++.+.|+. +.+...|+. +|..|+...-+..
T Consensus 2 S~a~IA~~A~~~GR~~LA~~LL~------~Ep~~~---~qVplLL~m~e~e~AL~--kAi~SgD~DLi~~vLl~L~~~l~ 70 (319)
T PF04840_consen 2 SYAEIARKAYEEGRPKLATKLLE------LEPRAS---KQVPLLLKMGEDELALN--KAIESGDTDLIYLVLLHLKRKLS 70 (319)
T ss_pred CHHHHHHHHHHcChHHHHHHHHH------cCCChH---HHHHHHhcCCchHHHHH--HHHHcCCccHHHHHHHHHHHhCC
Confidence 46677777888899888888764 244432 22556677888877743 233334444 4444444322221
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH-------H
Q 003457 196 RANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGAL-------A 268 (818)
Q Consensus 196 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~-------~ 268 (818)
.. + |.+++.. .|.. ..+...|++..+.+.-..+|.+--+. .......+-.++.. .+. .
T Consensus 71 -~s---~-f~~il~~--~p~a---~~l~~~~~r~~~~~~L~~~y~q~d~~----~~~a~~~l~~~~~~-~~~~~~~~~L~ 135 (319)
T PF04840_consen 71 -LS---Q-FFKILNQ--NPVA---SNLYKKYCREQDRELLKDFYYQEDRF----QELANLHLQEALSQ-KDVEEKISFLK 135 (319)
T ss_pred -HH---H-HHHHHHh--Ccch---HHHHHHHHHhccHHHHHHHHHhcchH----HHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 11 2 2233332 2332 22334455555555544444321111 11111112222222 232 2
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH---HH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 269 KAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKL---EK-EQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMK 344 (818)
Q Consensus 269 ~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m---~~-~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~ 344 (818)
.|.+.|.+..+.+ ....+ .++..++++.- .+ .+......+.+.-+.-|...|+...|.++-.+
T Consensus 136 ~a~~~y~~~k~~~--f~~~~---------~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~-- 202 (319)
T PF04840_consen 136 QAQKLYSKSKNDA--FEAKL---------IEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKE-- 202 (319)
T ss_pred HHHHHHHhcchhH--HHHHH---------HHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHH--
Confidence 3333333322211 11111 22222333221 11 11111223455556677788888887777444
Q ss_pred HHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 003457 345 RVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVV 424 (818)
Q Consensus 345 ~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~ 424 (818)
+.+ |+...|...+.+|+..++|++-.++.+. +..+.-|..++.+|.+.|+..+|..+..++ .+..
T Consensus 203 --Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~~~~eA~~yI~k~---------~~~~ 267 (319)
T PF04840_consen 203 --FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYGNKKEASKYIPKI---------PDEE 267 (319)
T ss_pred --cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCCCHHHHHHHHHhC---------ChHH
Confidence 334 7888999999999999999998886653 335688899999999999999999988871 2256
Q ss_pred HHHHHHHhhchHHHHHH
Q 003457 425 LSNMYAEAESMKMQLEI 441 (818)
Q Consensus 425 L~~~l~~~G~~~eA~~l 441 (818)
-+.+|.++|++.+|.+.
T Consensus 268 rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 268 RVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHCCCHHHHHHH
Confidence 77889999999999884
No 207
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.078 Score=54.94 Aligned_cols=114 Identities=12% Similarity=0.077 Sum_probs=86.6
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHc-
Q 003457 304 LFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCG---KVLEAEELIKRM- 379 (818)
Q Consensus 304 l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g---~~~~A~~~~~~m- 379 (818)
-++.-+..+ +-|...|..|..+|...++.+.|...|....+. ..+|...+..+..++..+. ...++.++|+++
T Consensus 144 ~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 144 RLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 333333343 337788999999999999999999999998876 4556677777777665433 356888999998
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 380 VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 380 ~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
...| |+.+...|...+...|++.+|...|+.|++..|.+..
T Consensus 221 ~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 221 ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 3445 5777777888899999999999999999998887543
No 208
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.74 E-value=0.0018 Score=42.93 Aligned_cols=30 Identities=40% Similarity=0.730 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQI 313 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 313 (818)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 678888888888888888888888877653
No 209
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.71 E-value=1.2 Score=48.32 Aligned_cols=407 Identities=10% Similarity=0.056 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHH
Q 003457 30 QLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQSPNH---FMWNTLIRAQASSLNPDKAIFLYMNM 106 (818)
Q Consensus 30 ~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~---~~yn~Li~~~~~~g~~~~Al~lf~~m 106 (818)
+..++.+.+.. -..|...|-.|+..+ ..++.+++-+++++++..|-+ ..|..-|++-...++++....+|.+.
T Consensus 27 D~lrLRerIkd--NPtnI~S~fqLiq~~--~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rC 102 (660)
T COG5107 27 DELRLRERIKD--NPTNILSYFQLIQYL--ETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRC 102 (660)
T ss_pred hHHHHHHHhhc--CchhHHHHHHHHHHH--hhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 33444444432 234789999999999 999999999999999987653 47888888888888999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCh------HHHHHHHHHHHH-cCCCCC-HHHHHHHHHHH---Hh------CCChHHH
Q 003457 107 RRTGFAPNQHTFTFVLKACSNVRSL------NCCKQIHTHVSK-SGLDLD-LHVVNCLVRCY---SV------SSDLNNA 169 (818)
Q Consensus 107 ~~~g~~pd~~ty~~ll~~~~~~g~~------~~A~~~~~~m~~-~g~~p~-~~~~~~Li~~y---~~------~g~~~~A 169 (818)
...... ...|...+.-..+.+.. ....+.++..+. .+++|- ...|+..+... -. ..++|..
T Consensus 103 L~k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 103 LKKSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred Hhhhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 876444 44444444333332211 112233333332 233332 23344433322 12 3345555
Q ss_pred HHHHHHhhcC---C-------HHHHHHHHHHHHH-------cCChHHHHHHHHHHHH--cCC----CCCHHHHHH-----
Q 003457 170 RQVFDEIRNR---T-------LNVWTTMISGYAQ-------SFRANEALMLFDQMLM--EGF----EPNSVTLAS----- 221 (818)
Q Consensus 170 ~~l~~~m~~~---d-------~~~~~~Li~~~~~-------~g~~~~A~~l~~~m~~--~g~----~pd~~t~~~----- 221 (818)
++.+.++..- + -..|..=+.-... .--+-.|...++++.. .|+ +.+..+++-
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s 260 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS 260 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence 6666666542 1 1122211111111 1123455555555532 222 112222222
Q ss_pred ------HHHHHHhc-----CC--hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHH
Q 003457 222 ------VLSACAQS-----GC--LELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAM 288 (818)
Q Consensus 222 ------ll~~~~~~-----g~--~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~L 288 (818)
.|+--... ++ .....-++++.+.- +.....+|----..+...++-+.|+...+.-.+-.+.....+
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~l 339 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFL 339 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeH
Confidence 22111111 01 01111223333222 122333333333344555666677666654443111111111
Q ss_pred HHHHHHcCCHHHHHHHHH-----------------------------HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003457 289 ISGLASHGHAEEALDLFR-----------------------------KLEKEQIVPNDITFVGVLSACCHAGFIDVGRQI 339 (818)
Q Consensus 289 i~~~~~~g~~~~A~~l~~-----------------------------~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~ 339 (818)
...|...++-++....|+ ++.-+...--...|...+++..+..-++.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 111111111111111111 111000011234567778888888889999999
Q ss_pred HHHHHHHhC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003457 340 FGSMKRVYG-IEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDVVMW-GALLAACKNHGNIEVAERVVKEIIALEP 416 (818)
Q Consensus 340 ~~~m~~~~g-~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~-~~Li~a~~~~g~~~~A~~~~~~~~~~~P 416 (818)
|-++.+. + +.+++..+++++..+ ..|+..-|.++|+-- ..-||...| +..+.-+...++-+.|..+|++.+..--
T Consensus 420 F~k~rk~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 420 FIKLRKE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred HHHHhcc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 9998876 5 667888888888755 578888999999865 334664443 4455566788899999999987665322
Q ss_pred C--CcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 417 N--NHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 417 ~--~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+ -...|..+++.-..-|++..|..+-+.+
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 2 2567888888888889998888765544
No 210
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.68 E-value=0.042 Score=58.21 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 81 FMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKA-CSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRC 159 (818)
Q Consensus 81 ~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~ 159 (818)
.+|..+|+...+.+..+.|..+|++.++.+ ..+...|...... +...++.+.|..+|+..++. +..+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888888888888887542 2233444444444 22356666688888888876 45577788888888
Q ss_pred HHhCCChHHHHHHHHHhhcC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003457 160 YSVSSDLNNARQVFDEIRNR------TLNVWTTMISGYAQSFRANEALMLFDQMLME 210 (818)
Q Consensus 160 y~~~g~~~~A~~l~~~m~~~------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 210 (818)
+.+.++.+.|+.+|++.... -...|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888653 2347888888778888888888888887765
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.67 E-value=0.0065 Score=66.48 Aligned_cols=62 Identities=11% Similarity=-0.012 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDV----VMWGALLAACKNHGNIEVAERVVKEIIAL 414 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~----~~~~~Li~a~~~~g~~~~A~~~~~~~~~~ 414 (818)
...++.+..+|.+.|++++|+..|++. ...|+. .+|.++..+|.+.|+.++|++.+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444455555555555555555555443 233432 23444555555555555555555555544
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.64 E-value=0.055 Score=54.34 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=85.4
Q ss_pred HHHHHhCCCHHHHHHHHhhCCC--C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--H
Q 003457 258 VHMYTKNGALAKAKALFDSMPE--R----NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACC--H 329 (818)
Q Consensus 258 i~~~~~~g~~~~A~~~f~~m~~--~----d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~--~ 329 (818)
...+.+.|++++|.+.|+.+.. | -......++.++.+.|++++|...+++.++.-+.-....+...+.+.+ +
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3344455556666555555543 1 112344456666667777777777777665432211122221111111 1
Q ss_pred -----------cCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003457 330 -----------AGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNH 398 (818)
Q Consensus 330 -----------~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~ 398 (818)
.+...+|...|+.+++ -|=......+|.+.+..+...- ..--..+..-|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHc
Confidence 1112233333443333 3333444444444444332000 01112245668899
Q ss_pred CCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHHhhchHHHHH
Q 003457 399 GNIEVAERVVKEIIALEPNNH---GVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 399 g~~~~A~~~~~~~~~~~P~~~---~~y~~L~~~l~~~G~~~eA~~ 440 (818)
|.+..|..-++.+++.-|+.. ++...++..|.+.|..+.|..
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999999999853 567788889999998885543
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=2.2 Score=49.48 Aligned_cols=317 Identities=15% Similarity=0.121 Sum_probs=171.4
Q ss_pred HcCCCCCHHHHHH-----HHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHhhc-
Q 003457 108 RTGFAPNQHTFTF-----VLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSS---DLNNARQVFDEIRN- 178 (818)
Q Consensus 108 ~~g~~pd~~ty~~-----ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g---~~~~A~~l~~~m~~- 178 (818)
+-|+..+..-|.. ++.-+...+.+..|.++-..+-..-.. ...+|.....-+.+.. +-+-+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466666665554 455667778888888886655322111 2466666777666653 23334444444444
Q ss_pred -CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-------
Q 003457 179 -RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGF----EPNSVTLASVLSACAQSGCLELGEKVHVFVKMRG------- 246 (818)
Q Consensus 179 -~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g------- 246 (818)
....+|....+.....|+++.|..+++.=...+. -.+..-+...+.-+...|+.+....++-.+.++-
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3455788888888888999888877654211110 0011123334444555666666666555554421
Q ss_pred ----CCCcHHHHHHHHH---------HHHhCCCHHHHHHH-HhhCC-----CCChhhHHHHHHHHHHcCCHH---H----
Q 003457 247 ----FEMGAILGTALVH---------MYTKNGALAKAKAL-FDSMP-----ERNIATWNAMISGLASHGHAE---E---- 300 (818)
Q Consensus 247 ----~~~~~~~~~~Li~---------~~~~~g~~~~A~~~-f~~m~-----~~d~~~~~~Li~~~~~~g~~~---~---- 300 (818)
.+....+|.-+++ .|-...+...+-.+ ++... +.-..........+.+..... +
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 1111122211111 11111111111111 11100 011111222333344333211 1
Q ss_pred ---HHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 301 ---ALDLFRKLEK-EQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELI 376 (818)
Q Consensus 301 ---A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 376 (818)
-+.+.+.+.. .|..-...+.+--+.-+...|+..+|.++-++.+ -||-..|-.-+.+++..+++++-+++-
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 1122222221 1222333445555666777788888888765532 377778888888889999998888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHH
Q 003457 377 KRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 377 ~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l 441 (818)
+..+ .+.-|.-...+|.+.|+.+||.+++-+.-.+ ...+.+|.+.|++.||.++
T Consensus 739 kskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hccC---CCCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHH
Confidence 7664 2556677788889999999998877654322 2677888899999998884
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.59 E-value=0.0082 Score=49.04 Aligned_cols=66 Identities=18% Similarity=0.214 Sum_probs=54.1
Q ss_pred HHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 360 VDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 360 i~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
-..|.+.+++++|+++++++ ...| +...|......+.+.|++++|.+.++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35688899999999999988 3445 567788888889999999999999999999999877655543
No 215
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.58 E-value=0.0036 Score=45.66 Aligned_cols=42 Identities=29% Similarity=0.548 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSN 427 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~ 427 (818)
.++..+...|.+.|++++|+++|+++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788999999999999999999999999999999988875
No 216
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.57 E-value=0.053 Score=56.59 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQIVPN--DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEP-KIEHYGCMV 360 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~Li 360 (818)
.|..-...+.+.|++++|+..|+.+++..+... ...+..+..+|...|++++|...|+.+.+.+...| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556677777777777766532211 23555666667777777777777777665422211 234444555
Q ss_pred HHHHHcCCHHHHHHHHHHc
Q 003457 361 DLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~m 379 (818)
..|...|+.++|.+.|+++
T Consensus 225 ~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 5666677777777777665
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.1 Score=52.62 Aligned_cols=131 Identities=15% Similarity=0.080 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-----CCCcHHHHHHH
Q 003457 183 VWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRG-----FEMGAILGTAL 257 (818)
Q Consensus 183 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g-----~~~~~~~~~~L 257 (818)
..+.++..+.-.|.+.-.+..+++.++...+.+......|++...+.|+.+.|..+++...+.. ......+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4567777778888888889999999887666677777788888888999999999998777653 23333344445
Q ss_pred HHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003457 258 VHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQI 313 (818)
Q Consensus 258 i~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 313 (818)
...|.-.+++..|...|.++.. .|+..-|.-.-+..-.|+..+|++.++.|.+.-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 5567777888888888888775 4566667766677777888889999988887633
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.0093 Score=63.81 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 003457 385 VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQVLFAGLASAADILQNPDFE 464 (818)
Q Consensus 385 ~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~ 464 (818)
..++++|.-+|.+.+++.+|++...+.++++|+|..+++.-+.+|...|+++.|+..++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~------------------ 318 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKAL------------------ 318 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHH------------------
Confidence 45678888889999999999999999999999999999999999999999999999877774
Q ss_pred CCCCCCCCCCCcceeee
Q 003457 465 SPPTNLTPNRSTPFVLL 481 (818)
Q Consensus 465 ~~~lel~P~~~~~~v~l 481 (818)
+++|+|-.+..-|
T Consensus 319 ----k~~P~Nka~~~el 331 (397)
T KOG0543|consen 319 ----KLEPSNKAARAEL 331 (397)
T ss_pred ----HhCCCcHHHHHHH
Confidence 7778776665554
No 219
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.49 E-value=0.026 Score=62.38 Aligned_cols=117 Identities=11% Similarity=0.086 Sum_probs=78.1
Q ss_pred CChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC-C-----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 003457 45 QDHFAASRLLAFCALSSSGDLSYATRLFNSIQS-P-----NHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTF 118 (818)
Q Consensus 45 ~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~-p-----~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty 118 (818)
-+......++..+ ....+++++..++.+... | -..+.+++++.|.+.|..++++.+++.=...|+-||..++
T Consensus 64 vS~~dld~fvn~~--~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 64 VSSLDLDIFVNNV--ESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CcHHHHHHHHhhc--CCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3444555555555 566667777777666542 1 1224457788888888888888888777777888888888
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 003457 119 TFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVS 163 (818)
Q Consensus 119 ~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~ 163 (818)
+.||..+.+.|++..|.++...|...+...+..++..-+..|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888777777666555555555444444443
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.15 Score=51.45 Aligned_cols=136 Identities=14% Similarity=0.121 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh----CCCCCHHHHHH
Q 003457 283 ATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVY----GIEPKIEHYGC 358 (818)
Q Consensus 283 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~----g~~p~~~~~~~ 358 (818)
...+.++..+...+.+.-.+.++++.++...+.++.....|++.-.+.||.+.|...|+.+.+.. +..-+..+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777788889999999999999998777788888899999999999999999999776552 22233344445
Q ss_pred HHHHHHHcCCHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 359 MVDLLGRCGKVLEAEELIKRMVW--KPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 359 Li~~~~~~g~~~~A~~~~~~m~~--~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
....|.-++++.+|...|.+... ..|+...|+-.-++.-.|+...|++..+.+.++.|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 55567778899999999998852 3356666666666677899999999999999999984
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.40 E-value=0.048 Score=53.83 Aligned_cols=99 Identities=12% Similarity=0.167 Sum_probs=73.8
Q ss_pred HHHHHHhhc--CCCCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-----------
Q 003457 67 YATRLFNSI--QSPNHFMWNTLIRAQASS-----LNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNV----------- 128 (818)
Q Consensus 67 ~A~~lf~~~--~~p~~~~yn~Li~~~~~~-----g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~----------- 128 (818)
.-...|+.. ...+..+|..+++.|.+. |..+=....++.|.+.|+.-|..+|+.|++.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 345566665 457788888888887654 55666667778888888888888888888886432
Q ss_pred -----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 003457 129 -----RSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSD 165 (818)
Q Consensus 129 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~ 165 (818)
.+-+-|.+++++|...|+.||..++..|++.+.+.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345688889999999999999998888888765543
No 222
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.39 E-value=0.035 Score=61.42 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003457 149 DLHVVNCLVRCYSVSSDLNNARQVFDEIRNR------TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASV 222 (818)
Q Consensus 149 ~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 222 (818)
+......+++.+....+++++..++.+.... ...+..++++.|.+.|..++++.+++.=..-|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4445555666666666677777777666542 1124457777888888888888877777777888888888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Q 003457 223 LSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKN 264 (818)
Q Consensus 223 l~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~ 264 (818)
|..+.+.|++..|.++..+|..++.-.+..++...+.++.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888877777776555555555444444444
No 223
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.34 E-value=1.2 Score=43.82 Aligned_cols=221 Identities=18% Similarity=0.061 Sum_probs=104.5
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 003457 195 FRANEALMLFDQMLMEGFEP-NSVTLASVLSACAQSGCLELGEKVHVFVKMR-GFEMGAILGTALVHMYTKNGALAKAKA 272 (818)
Q Consensus 195 g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~-g~~~~~~~~~~Li~~~~~~g~~~~A~~ 272 (818)
+....+...+..+....... ....+......+...+++..+...+...... ........+..+...+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44555555555554432110 2344455555555666666666665555542 123333444445555555555666666
Q ss_pred HHhhCCC--CCh-hhHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003457 273 LFDSMPE--RNI-ATWNAMIS-GLASHGHAEEALDLFRKLEKEQI--VPNDITFVGVLSACCHAGFIDVGRQIFGSMKRV 346 (818)
Q Consensus 273 ~f~~m~~--~d~-~~~~~Li~-~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~ 346 (818)
.+..... ++. ........ .+...+++++|...+.+...... ......+......+...++.+.+...+....+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 6655543 111 12222222 45556666666666666543211 012222233333344555556666555555543
Q ss_pred hCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 347 YGIEP-KIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPD-VVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 347 ~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
.+. ....+..+...+...+++++|...+.... ..|+ ...+..+...+...++.+++...+++.++..|.
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 --NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 222 24445555555555555555555555542 2222 233333333333444555555555555555554
No 224
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.31 E-value=0.42 Score=47.95 Aligned_cols=60 Identities=8% Similarity=-0.122 Sum_probs=33.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC
Q 003457 86 LIRAQASSLNPDKAIFLYMNMRRTGFA--PNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSG 145 (818)
Q Consensus 86 Li~~~~~~g~~~~Al~lf~~m~~~g~~--pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g 145 (818)
....+.+.|++.+|+..|+++...-.. --......++.++.+.|+++.|...++.+++.-
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 344455667777777777776654221 112344455666667777777777777766653
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.27 E-value=1.3 Score=43.51 Aligned_cols=187 Identities=21% Similarity=0.164 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 003457 252 ILGTALVHMYTKNGALAKAKALFDSMPE-----RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLS- 325 (818)
Q Consensus 252 ~~~~~Li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~- 325 (818)
.........+...+++..+...+..... .....+..+...+...+++.++...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 3344444455555555555544444321 2233344444444445555555555555544322221 11111111
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCC
Q 003457 326 ACCHAGFIDVGRQIFGSMKRVYGI--EPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPD--VVMWGALLAACKNHGN 400 (818)
Q Consensus 326 a~~~~g~~~~A~~~~~~m~~~~g~--~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd--~~~~~~Li~a~~~~g~ 400 (818)
++...++++.+...+.+.... .. ......+......+...++.++|...+.++. ..++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 445555555555555554321 10 0122233333333445555555555555541 1122 3444444445555555
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 401 IEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 401 ~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
++.|...+.++....|+....+..+...+...++++++..
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHH
Confidence 5555555555555555433344444444444444555544
No 226
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.26 E-value=0.077 Score=46.67 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHhCCCCCHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQI-VPNDITFVGVLSACCHAG--------FIDVGRQIFGSMKRVYGIEPKIE 354 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~g--------~~~~A~~~~~~m~~~~g~~p~~~ 354 (818)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++.+.+.+|+.|+.. +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 344456667777999999999999999999 899999999998877653 345667788888876 7888888
Q ss_pred HHHHHHHHHHH
Q 003457 355 HYGCMVDLLGR 365 (818)
Q Consensus 355 ~~~~Li~~~~~ 365 (818)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 227
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.24 E-value=3 Score=48.40 Aligned_cols=333 Identities=12% Similarity=0.050 Sum_probs=157.0
Q ss_pred HhCCCCChHHHHHHH---HHhhhhcCCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHhCCCh--hHHHHHHHHHHHcCC
Q 003457 40 ISSRIQDHFAASRLL---AFCALSSSGDLSYATRLFNSIQSPN---HFMWNTLIRAQASSLNP--DKAIFLYMNMRRTGF 111 (818)
Q Consensus 40 ~~g~~~d~~~~~~Ll---~~~a~~k~g~~e~A~~lf~~~~~p~---~~~yn~Li~~~~~~g~~--~~Al~lf~~m~~~g~ 111 (818)
+.|+..+..-|.+|= .+..+...+.+..|+++-+.+..|- -..|.....-+.+..+. +++++..++=.....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 446666665555542 1222367788899999988887654 44555555556555322 334443333222212
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH----------HHHHHHHHHhCCChHHHHHHHHHhhcC-C
Q 003457 112 APNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHV----------VNCLVRCYSVSSDLNNARQVFDEIRNR-T 180 (818)
Q Consensus 112 ~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----------~~~Li~~y~~~g~~~~A~~l~~~m~~~-d 180 (818)
-....|..+.+.....|+.+.|..+++. +|+... +...+.-..+.||.+-...++-.+... .
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~------E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~ 577 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLEL------EPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLN 577 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhc------CCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 3456788888877888999888887653 222211 112222233344444444433333221 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-Hc-CCCCcHHHHHHHH
Q 003457 181 LNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVK-MR-GFEMGAILGTALV 258 (818)
Q Consensus 181 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~-~~-g~~~~~~~~~~Li 258 (818)
... .+....+...|..+|++..+.. |..+ +-..|-+..+......++-+-. .. .+..-........
T Consensus 578 ~s~------l~~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a 645 (829)
T KOG2280|consen 578 RSS------LFMTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAA 645 (829)
T ss_pred HHH------HHHHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHH
Confidence 111 1112234445556665554321 1111 1111222222222111111110 00 0011111122233
Q ss_pred HHHHhCCCHHHHH----------HHHhhCCCC-----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003457 259 HMYTKNGALAKAK----------ALFDSMPER-----NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGV 323 (818)
Q Consensus 259 ~~~~~~g~~~~A~----------~~f~~m~~~-----d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 323 (818)
..+.+.....-.. ++.+.+... .--+.+--+.-+...|+..+|.++-++.+ -||...|-.-
T Consensus 646 ~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk 721 (829)
T KOG2280|consen 646 NAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLK 721 (829)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHH
Confidence 3343333311111 111111110 01123333444555677777766655543 3566666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003457 324 LSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEV 403 (818)
Q Consensus 324 l~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~ 403 (818)
+.+++..+++++-+++-+.. ..+.-|.-.+.+|.+.|+.+||.+++-+....+ -...+|.+.|++.+
T Consensus 722 ~~aLa~~~kweeLekfAksk-------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~e 788 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSK-------KSPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKE 788 (829)
T ss_pred HHHHHhhhhHHHHHHHHhcc-------CCCCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHH
Confidence 67777777776655543331 124455566677777777777777777764222 34556667777776
Q ss_pred HHHHH
Q 003457 404 AERVV 408 (818)
Q Consensus 404 A~~~~ 408 (818)
|.++.
T Consensus 789 Aad~A 793 (829)
T KOG2280|consen 789 AADLA 793 (829)
T ss_pred HHHHH
Confidence 66544
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.16 E-value=0.01 Score=49.25 Aligned_cols=61 Identities=11% Similarity=0.130 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---CcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 385 VVMWGALLAACKNHGNIEVAERVVKEIIAL----EPN---NHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 385 ~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~----~P~---~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
..+++.+...|...|++++|+..|++++++ +++ -..++..++.++.+.|++++|++.++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357788888999999999999999988864 222 2567889999999999999999977665
No 229
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.95 E-value=0.1 Score=54.74 Aligned_cols=157 Identities=8% Similarity=0.044 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCC----CHHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEK-EQIVPN---DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEP----KIEH 355 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~-~g~~pd---~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p----~~~~ 355 (818)
+|..+..++.+..++.+++.+-+.-.. .|..|. -.....+..++...+.++++++.|+...+...-.. ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444444454444444444444333222 122221 12223345566666667777776666554311111 2356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcC-----CC-CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CC
Q 003457 356 YGCMVDLLGRCGKVLEAEELIKRMV-----WK-PD------VVMWGALLAACKNHGNIEVAERVVKEIIALE------PN 417 (818)
Q Consensus 356 ~~~Li~~~~~~g~~~~A~~~~~~m~-----~~-pd------~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~------P~ 417 (818)
+-.|...|.+..++++|.-+..++. .. .| ......|..++...|..-.|.+..+++.++. |-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 6667777777777777665554441 01 11 1223334456677777777777777665532 22
Q ss_pred CcchHHHHHHHHHHhhchHHHHH
Q 003457 418 NHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 418 ~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
......+++++|...|+.|.|++
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~ 267 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFR 267 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHH
Confidence 34555677777777777777766
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.91 E-value=0.017 Score=47.90 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcC-----CC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003457 354 EHYGCMVDLLGRCGKVLEAEELIKRMV-----WK---PD-VVMWGALLAACKNHGNIEVAERVVKEIIAL 414 (818)
Q Consensus 354 ~~~~~Li~~~~~~g~~~~A~~~~~~m~-----~~---pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~ 414 (818)
.+++.+...|...|++++|++.|+++. .. |+ ..++..+...+...|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 355666666666777666666666551 11 22 456777777788888888888888877764
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.79 E-value=4.4 Score=46.30 Aligned_cols=159 Identities=13% Similarity=0.053 Sum_probs=107.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHH
Q 003457 83 WNTLIRAQASSLNPDKAIFLYMNMRRTG-FAPNQ-----HTFTFVLKACSN----VRSLNCCKQIHTHVSKSGLDLDLHV 152 (818)
Q Consensus 83 yn~Li~~~~~~g~~~~Al~lf~~m~~~g-~~pd~-----~ty~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~ 152 (818)
...+++...=.|+-+.+++++.+..+.+ ++-.. -.|..++..+.. ..+.+.|.++++.+.+.- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 4456666677889999999988866532 32111 234444443332 457788999999998863 34443
Q ss_pred H-HHHHHHHHhCCChHHHHHHHHHhhcC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003457 153 V-NCLVRCYSVSSDLNNARQVFDEIRNR-------TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLS 224 (818)
Q Consensus 153 ~-~~Li~~y~~~g~~~~A~~l~~~m~~~-------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 224 (818)
| -.-.+.+...|++++|.+.|++.... ....+.-++-.+.-..+|++|.+.|.++.+.. ..+...|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 3 34456778899999999999976542 22245566677888899999999999999875 455566665554
Q ss_pred HH-HhcCCh-------hHHHHHHHHHHH
Q 003457 225 AC-AQSGCL-------ELGEKVHVFVKM 244 (818)
Q Consensus 225 ~~-~~~g~~-------~~A~~i~~~~~~ 244 (818)
+| ...++. ++|..++.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 44 466777 777777776654
No 232
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.65 E-value=0.28 Score=45.44 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=53.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHH
Q 003457 358 CMVDLLGRCGKVLEAEELIKRMVWK-P----DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG---VYVVLSNMY 429 (818)
Q Consensus 358 ~Li~~~~~~g~~~~A~~~~~~m~~~-p----d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~---~y~~L~~~l 429 (818)
.-.....+.|++++|.+.|+.+..+ | ....-..|+.+|.+.+++++|...+++.++++|.++. ++...+.++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3344456788888888888887311 2 2456677888899999999999999999999988764 344445445
Q ss_pred HHhhc
Q 003457 430 AEAES 434 (818)
Q Consensus 430 ~~~G~ 434 (818)
.++..
T Consensus 95 ~~~~~ 99 (142)
T PF13512_consen 95 YEQDE 99 (142)
T ss_pred HHHhh
Confidence 55444
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=95.59 E-value=0.48 Score=52.36 Aligned_cols=143 Identities=13% Similarity=0.173 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003457 297 HAEEALDLFRKLEK-EQIVPN-DITFVGVLSACCHA---------GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR 365 (818)
Q Consensus 297 ~~~~A~~l~~~m~~-~g~~pd-~~t~~~ll~a~~~~---------g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~ 365 (818)
..+.|+.+|.+... ....|+ ...|..+..++... .+..+|.++-++..+. -+.|......+..++..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 35678888888872 223454 34444444333321 2345566666666654 44567777777777788
Q ss_pred cCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH--HHHHHHHHhhchHHHHHH
Q 003457 366 CGKVLEAEELIKRM-VWKPD-VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYV--VLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 366 ~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~--~L~~~l~~~G~~~eA~~l 441 (818)
.++++.|...|+++ ...|| ..+|......+...|+.++|.+.+++++++.|....+-. ..++.|. ...+++|+++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHH
Confidence 88899999999888 45675 566666666778889999999999999999987544333 2233444 3457778874
Q ss_pred H
Q 003457 442 L 442 (818)
Q Consensus 442 ~ 442 (818)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 4
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=95.56 E-value=0.19 Score=55.42 Aligned_cols=114 Identities=12% Similarity=0.026 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHHcC
Q 003457 332 FIDVGRQIFGSMKRVYGIEPK-IEHYGCMVDLLGR---------CGKVLEAEELIKRM-V-WKPDVVMWGALLAACKNHG 399 (818)
Q Consensus 332 ~~~~A~~~~~~m~~~~g~~p~-~~~~~~Li~~~~~---------~g~~~~A~~~~~~m-~-~~pd~~~~~~Li~a~~~~g 399 (818)
..+.|..+|.+......++|+ ...|..+..++.. .....+|.++-+++ . ..-|......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 466788888888743345665 4555555544432 22345666677666 2 3347888888888888899
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 400 NIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 400 ~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+++.|...|+++..++|+.+..|...+.++.-+|+.++|.+..+..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999966553
No 235
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.48 E-value=0.17 Score=49.98 Aligned_cols=95 Identities=9% Similarity=0.115 Sum_probs=57.7
Q ss_pred HHHHHh--hcCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------------
Q 003457 171 QVFDEI--RNRTLNVWTTMISGYAQS-----FRANEALMLFDQMLMEGFEPNSVTLASVLSACAQS-------------- 229 (818)
Q Consensus 171 ~l~~~m--~~~d~~~~~~Li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~-------------- 229 (818)
..|++. ..++..+|..++..|.+. |..+=....+++|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344443 334555555555555433 44555556666666667777777777777655331
Q ss_pred --CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Q 003457 230 --GCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNG 265 (818)
Q Consensus 230 --g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g 265 (818)
.+-+-|.+++++|...|+-||..++..|++.+.+.+
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 134567777777777777777777777777775544
No 236
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.37 E-value=2.5 Score=51.44 Aligned_cols=137 Identities=18% Similarity=0.148 Sum_probs=69.0
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003457 257 LVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVG 336 (818)
Q Consensus 257 Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A 336 (818)
.++.--+.+.+++|..++.-=.+.--..|.+-...+.+..++++|.-.|+..-+ ..-.+.+|...|++.+|
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 344444555555555544322222223344444444555666666666654321 11235566667777777
Q ss_pred HHHHHHHHHHhCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 337 RQIFGSMKRVYGIEPKI--EHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEI 411 (818)
Q Consensus 337 ~~~~~~m~~~~g~~p~~--~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~ 411 (818)
..+..++.. ..+. .+-..|+.-+..++++-+|-++..+....|.. .+..|++...+++|+++....
T Consensus 985 l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 985 LSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 766665432 1221 22255666666777777777777666433221 122344455566666555433
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=95.37 E-value=0.33 Score=46.12 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=32.1
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003457 294 SHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAE 373 (818)
Q Consensus 294 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 373 (818)
+.|++++|..+|+-+...++. +..-+..|..+|-..+++++|...|...... ...|+..+-....+|...|+.++|+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l--~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTL--LKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ccCCCCccchHHHHHHHhCCHHHHH
Confidence 344444444444444332211 2222333333344444444444444443322 1122222223334444444444444
Q ss_pred HHHHHc
Q 003457 374 ELIKRM 379 (818)
Q Consensus 374 ~~~~~m 379 (818)
+.|+..
T Consensus 126 ~~f~~a 131 (165)
T PRK15331 126 QCFELV 131 (165)
T ss_pred HHHHHH
Confidence 444444
No 238
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.33 E-value=6.8 Score=44.59 Aligned_cols=184 Identities=15% Similarity=0.111 Sum_probs=126.4
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 250 GAILGTALVHMYTKNGALAKAKALFDSMPER---NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSA 326 (818)
Q Consensus 250 ~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 326 (818)
+...|...++.-.+.|+.+.+.-+|++..-+ =...|-..+.-....|+.+-|..++....+-..+-...+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567777888888999999999999988754 2345655555556669999888888877665443333322222234
Q ss_pred HHHcCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHcCCHHHHH---HHHHHc-CCCCCHHHHHHHHH-----HHH
Q 003457 327 CCHAGFIDVGRQIFGSMKRVYGIEPK-IEHYGCMVDLLGRCGKVLEAE---ELIKRM-VWKPDVVMWGALLA-----ACK 396 (818)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~Li~~~~~~g~~~~A~---~~~~~m-~~~pd~~~~~~Li~-----a~~ 396 (818)
+...|++..|..+++.+... . |+ +..-..-+....+.|..+.+. +++... ..+-+......+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 55678999999999999886 4 54 444445566677888888888 444444 12222222222222 234
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchH
Q 003457 397 NHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMK 436 (818)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~ 436 (818)
-.++.+.|..++.++.+..|++...|..+.+.....+-..
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGR 492 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcch
Confidence 5788999999999999999999999999988887665433
No 239
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.27 E-value=0.087 Score=53.94 Aligned_cols=90 Identities=19% Similarity=0.159 Sum_probs=41.4
Q ss_pred HcCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHHcCCHH
Q 003457 329 HAGFIDVGRQIFGSMKRVYGIE-PKIEHYGCMVDLLGRCGKVLEAEELIKRMV----WKP-DVVMWGALLAACKNHGNIE 402 (818)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~g~~-p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~p-d~~~~~~Li~a~~~~g~~~ 402 (818)
+.|++..|.+.|...++.+.-. -....+.-|...+..+|++++|..+|..+. ..| -+..+..|.....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 4445555555555555431100 012233344555555555555555554441 111 1344444444455555555
Q ss_pred HHHHHHHHHHhcCCCC
Q 003457 403 VAERVVKEIIALEPNN 418 (818)
Q Consensus 403 ~A~~~~~~~~~~~P~~ 418 (818)
+|...|++.++..|+.
T Consensus 233 ~A~atl~qv~k~YP~t 248 (262)
T COG1729 233 EACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHHHHHHHHCCCC
Confidence 5555555555555553
No 240
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.23 E-value=3.3 Score=45.11 Aligned_cols=154 Identities=10% Similarity=0.002 Sum_probs=87.4
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC--HH
Q 003457 280 RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVP---NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK--IE 354 (818)
Q Consensus 280 ~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~--~~ 354 (818)
....+|..++..+.+.|+++.|...+.++...+... +......-....-..|+..+|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 455678888888888899998888888887643211 2233334456667778888888888877762 11111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHH-HHHcCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 003457 355 HYGCMVDLLGRCGKVLEAEEL-IKRMVWKPDVVMWGALLAACKNH------GNIEVAERVVKEIIALEPNNHGVYVVLSN 427 (818)
Q Consensus 355 ~~~~Li~~~~~~g~~~~A~~~-~~~m~~~pd~~~~~~Li~a~~~~------g~~~~A~~~~~~~~~~~P~~~~~y~~L~~ 427 (818)
....+...+.. ..+..... ......+.-...+..+..-+... ++.+++.+.|+++.++.|+....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000123333344433444 78999999999999999998889998888
Q ss_pred HHHHhhchH
Q 003457 428 MYAEAESMK 436 (818)
Q Consensus 428 ~l~~~G~~~ 436 (818)
.+.+.=+.+
T Consensus 301 ~~~~~~~~~ 309 (352)
T PF02259_consen 301 FNDKLLESD 309 (352)
T ss_pred HHHHHHHhh
Confidence 877664433
No 241
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.22 E-value=0.63 Score=49.15 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=25.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHh---CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 326 ACCHAGFIDVGRQIFGSMKRVY---GIEP-KIEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 326 a~~~~g~~~~A~~~~~~m~~~~---g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
++...|.+-.|.+.-++..+.. |..+ .......+.+.|...|+.+.|..-|+.+
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 4444555555554444433221 1111 1233345556666666666666555543
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.17 E-value=1.4 Score=44.84 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=46.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 391 LLAACKNHGNIEVAERVVKEIIALEPNN---HGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 391 Li~a~~~~g~~~~A~~~~~~~~~~~P~~---~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+.+-|.+.|.+..|..-++++++.-|+. .+.+..|..+|.+.|-.++|.+..+.+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4556889999999999999999977664 467778889999999999999988887
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=1.8 Score=44.96 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=76.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH
Q 003457 290 SGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKV 369 (818)
Q Consensus 290 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~ 369 (818)
......|++.+|..+|+........ +......+..+|...|+.+.|..++..+-.. --.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3445566777777777666654322 2334445566666777777777766664432 0011111111223333343333
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHhhchHH
Q 003457 370 LEAEELIKRMVWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALE--PNNHGVYVVLSNMYAEAESMKM 437 (818)
Q Consensus 370 ~~A~~~~~~m~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~--P~~~~~y~~L~~~l~~~G~~~e 437 (818)
.+...+-++....| |...-..+...+...|+.++|.+.+-.+++.+ -++...-..|..++.-.|.-+.
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 33333333333334 45555666666677777777776665555532 3345566666666666664443
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.97 E-value=0.015 Score=42.28 Aligned_cols=42 Identities=14% Similarity=0.252 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeeec
Q 003457 419 HGVYVVLSNMYAEAESMKMQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLLN 482 (818)
Q Consensus 419 ~~~y~~L~~~l~~~G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l~ 482 (818)
+..+..++..|.+.|++++|+++++..+ +.+|+|+.++..++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l----------------------~~~P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRAL----------------------ALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------HHCcCCHHHHHHhh
Confidence 3578899999999999999999887774 89999998877654
No 245
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.81 E-value=0.62 Score=43.82 Aligned_cols=70 Identities=16% Similarity=0.073 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCcHHH
Q 003457 183 VWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKM-----RGFEMGAIL 253 (818)
Q Consensus 183 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~-----~g~~~~~~~ 253 (818)
+...++..+...|++++|+++++++.... +-|...|..+|.++...|+..+|.+.|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44556666667777777777777777664 55666777777777777777777777766653 256665544
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=1.6 Score=43.95 Aligned_cols=87 Identities=15% Similarity=0.116 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcC-------CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCcchHH
Q 003457 356 YGCMVDLLGRCGKVLEAEELIKRMV-------WKPDV-VMWGALLAACKNHGNIEVAERVVKEIIAL----EPNNHGVYV 423 (818)
Q Consensus 356 ~~~Li~~~~~~g~~~~A~~~~~~m~-------~~pd~-~~~~~Li~a~~~~g~~~~A~~~~~~~~~~----~P~~~~~y~ 423 (818)
+....+.|.+..++++|-..|.+-. .-++. ..|...|-.+....++..|+..++...++ .|++.....
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3444455666667766666555442 11221 23444454556666788888887776553 355556666
Q ss_pred HHHHHHHHhhchHHHHHHHH
Q 003457 424 VLSNMYAEAESMKMQLEILL 443 (818)
Q Consensus 424 ~L~~~l~~~G~~~eA~~l~~ 443 (818)
.|...| ..|+.+++.++..
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 666555 4566666666543
No 247
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.78 E-value=7.9 Score=42.44 Aligned_cols=369 Identities=11% Similarity=0.082 Sum_probs=198.8
Q ss_pred HHHhhcCC--CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCC
Q 003457 70 RLFNSIQS--PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLD 147 (818)
Q Consensus 70 ~lf~~~~~--p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~ 147 (818)
++-+++.+ .|+.+|-.||.-|...+..++..+++++|..- .+--...+..-+..=...+++...+.+|.+.+...+.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 55566663 57889999999999999999999999999763 2223456777777766778999999999999887554
Q ss_pred CCHHHHHHHHHHHHhCCC---------hHHHHHHHHHhh--cC-CHHHHHHHHHHH---------HHcCChHHHHHHHHH
Q 003457 148 LDLHVVNCLVRCYSVSSD---------LNNARQVFDEIR--NR-TLNVWTTMISGY---------AQSFRANEALMLFDQ 206 (818)
Q Consensus 148 p~~~~~~~Li~~y~~~g~---------~~~A~~l~~~m~--~~-d~~~~~~Li~~~---------~~~g~~~~A~~l~~~ 206 (818)
...|...++.-.+.+. +-+|.++.-... ++ ....|+..+..+ -++.+.|...+.|.+
T Consensus 109 --ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~r 186 (660)
T COG5107 109 --LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMR 186 (660)
T ss_pred --HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 5556666654444331 222222221111 11 222344433221 123344556666766
Q ss_pred HHHcCCCC------CHHHHHHHHHHHHh---cC----ChhHHHHHHHHHHHc--CC----CCcHHHHHHH----------
Q 003457 207 MLMEGFEP------NSVTLASVLSACAQ---SG----CLELGEKVHVFVKMR--GF----EMGAILGTAL---------- 257 (818)
Q Consensus 207 m~~~g~~p------d~~t~~~ll~~~~~---~g----~~~~A~~i~~~~~~~--g~----~~~~~~~~~L---------- 257 (818)
|+.--+.- |-..|..=++-... .| -+-.|.+.++++... |. +.+..+++..
T Consensus 187 al~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlN 266 (660)
T COG5107 187 ALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLN 266 (660)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhh
Confidence 66431110 11111111111110 01 133455555555432 21 1122222221
Q ss_pred -HHHHHhCC-----C-H-HHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--------
Q 003457 258 -VHMYTKNG-----A-L-AKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDI-------- 318 (818)
Q Consensus 258 -i~~~~~~g-----~-~-~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------- 318 (818)
|+--...+ + . ....-++++... -....|.---..+...++-++|+...++-.+. .|...
T Consensus 267 wIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~~lse~ye 344 (660)
T COG5107 267 WIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTMFLSEYYE 344 (660)
T ss_pred HhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchheeHHHHHh
Confidence 11100000 0 0 011111121111 12233433344455667777787776654332 22210
Q ss_pred ----------HHHHHHHHHHH---cCCHHHHHHH------HHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 319 ----------TFVGVLSACCH---AGFIDVGRQI------FGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 319 ----------t~~~ll~a~~~---~g~~~~A~~~------~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
+|..+...+.+ .++-+.+... ..++.-+ ....-..+|..+++...+..-.+.|..+|-++
T Consensus 345 l~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~k-r~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 345 LVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLK-RINKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHH-HHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 11112211111 1111111100 1111000 12234567888999888999999999999888
Q ss_pred C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 380 V----WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 380 ~----~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
. ..+++..+++++. +-..|+..-|-.+|+-.+...||++..-.-....+.+.++-+.|..+|+..
T Consensus 424 rk~~~~~h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFets 492 (660)
T COG5107 424 RKEGIVGHHVYIYCAFIE-YYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETS 492 (660)
T ss_pred hccCCCCcceeeeHHHHH-HHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 4 3467888888887 446788999999999999999997766667777888888888888877643
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.76 E-value=0.16 Score=47.82 Aligned_cols=61 Identities=21% Similarity=0.223 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
.....++..+...|++++|++.+++++..+|-+...|..++.+|.+.|+..+|.+.++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3456667778889999999999999999999999999999999999999999999876663
No 249
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.69 E-value=8.4 Score=42.36 Aligned_cols=67 Identities=6% Similarity=-0.038 Sum_probs=44.3
Q ss_pred hcCCCHHHHHHHHhhcCC------------------CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcC----CCCCHHH
Q 003457 60 SSSGDLSYATRLFNSIQS------------------PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTG----FAPNQHT 117 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~~------------------p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g----~~pd~~t 117 (818)
-+.+++..|.+.+..-.. +|-.-=+..+.++.+.|++.++..++++|...= ..-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 478888888887764321 122233455677788899999988888877542 3367778
Q ss_pred HHHHHHHHH
Q 003457 118 FTFVLKACS 126 (818)
Q Consensus 118 y~~ll~~~~ 126 (818)
|+.++-.+.
T Consensus 170 yd~~vlmls 178 (549)
T PF07079_consen 170 YDRAVLMLS 178 (549)
T ss_pred HHHHHHHHh
Confidence 877554443
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=2.6 Score=42.41 Aligned_cols=199 Identities=10% Similarity=0.126 Sum_probs=97.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003457 83 WNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSV 162 (818)
Q Consensus 83 yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~ 162 (818)
|..-..+|...+++++|-..+.+..+- .+-+...| .- ...+++|..+.+++.+.. --...++.-..+|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hA------AKayEqaamLake~~kls--Evvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HA------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HH------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 333455666667777777766665531 12111111 11 122345555555554421 122345556667777
Q ss_pred CCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCCH---HHHHHHHHHHHhcCChhHHHH
Q 003457 163 SSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGF--EPNS---VTLASVLSACAQSGCLELGEK 237 (818)
Q Consensus 163 ~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~---~t~~~ll~~~~~~g~~~~A~~ 237 (818)
+|..+.|-..+++..+ ..+..++++|+++|++....-. ..+. ..+..+-+.+.+..++++|..
T Consensus 104 ~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred hCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 7777777666665432 2345667777777776543210 1111 122333344555555555544
Q ss_pred HHHHHHHc-----CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-------CChhhHHHHHHHHHHcCCHHHHHHH
Q 003457 238 VHVFVKMR-----GFEMGAILGTALVHMYTKNGALAKAKALFDSMPE-------RNIATWNAMISGLASHGHAEEALDL 304 (818)
Q Consensus 238 i~~~~~~~-----g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-------~d~~~~~~Li~~~~~~g~~~~A~~l 304 (818)
.+.+-... ....--..+...|-.|.-..++..|++.|+.-.+ .+..+...|+.+|-. |+.+++.++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~-gD~E~~~kv 249 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE-GDIEEIKKV 249 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc-CCHHHHHHH
Confidence 33322211 0111112344445555556677777777766332 344556666665543 555554433
No 251
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.55 E-value=11 Score=43.02 Aligned_cols=118 Identities=14% Similarity=0.047 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-----CCCCHHHHHHHH
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-----WKPDVVMWGALL 392 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-----~~pd~~~~~~Li 392 (818)
.+|...+.--...|+.+...-+|++..-- +..-...|-..++-....|+.+-|..++.... ..|....+.+.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45555555555666666666666664432 22233445555555555566666666655542 122333333222
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHH
Q 003457 393 AACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQL 439 (818)
Q Consensus 393 ~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~ 439 (818)
+...|+++.|..++++..+.-|...+.-..-+....+.|+.+.+.
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 345667777777777766655666555555666666666666666
No 252
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.53 E-value=0.14 Score=56.42 Aligned_cols=63 Identities=10% Similarity=0.013 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 003457 315 PNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKI----EHYGCMVDLLGRCGKVLEAEELIKRMV 380 (818)
Q Consensus 315 pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~Li~~~~~~g~~~~A~~~~~~m~ 380 (818)
.+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|++.|+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678999999999999999999999998864 5663 459999999999999999999999984
No 253
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=13 Score=43.88 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 358 CMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 358 ~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
-++..+.+..+++.+..+.+.... -++..|..++..+.+.+.++.-.+...+.++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~-~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGK-EDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCc-cChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 355566777778888877777753 2777888888888887766665555555443
No 254
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.48 E-value=4.1 Score=44.43 Aligned_cols=75 Identities=19% Similarity=0.044 Sum_probs=41.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHc---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 86 LIRAQASSLNPDKAIFLYMNMRRTG---FAPNQHTFTFVLKACSN---VRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRC 159 (818)
Q Consensus 86 Li~~~~~~g~~~~Al~lf~~m~~~g---~~pd~~ty~~ll~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~ 159 (818)
|+-+|....+++..+++.+.|...- +.-....-....-++.+ .|+.++|++++..++.....++..++..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334666677777777777776531 11011111122333444 66777777777775555555566666666655
Q ss_pred H
Q 003457 160 Y 160 (818)
Q Consensus 160 y 160 (818)
|
T Consensus 227 y 227 (374)
T PF13281_consen 227 Y 227 (374)
T ss_pred H
Confidence 5
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.48 E-value=0.81 Score=51.51 Aligned_cols=128 Identities=11% Similarity=0.087 Sum_probs=68.4
Q ss_pred cCCCHHHHHHHHh--hcC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 003457 61 SSGDLSYATRLFN--SIQ-SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQI 137 (818)
Q Consensus 61 k~g~~e~A~~lf~--~~~-~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~ 137 (818)
-.++++++.++.+ ++. .-+....+.+++.+.+.|.++.|+++-+.-.. -.....+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHH
Confidence 4567777554444 111 12244566777777777777777776433221 24445567777777665
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 003457 138 HTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEG 211 (818)
Q Consensus 138 ~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 211 (818)
.++ ..+...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+...+.|
T Consensus 341 a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 341 AKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp CCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 322 22556777777777777777777777766543 4455555666666665555555555444
No 256
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=13 Score=43.61 Aligned_cols=138 Identities=12% Similarity=0.059 Sum_probs=80.0
Q ss_pred hcCCCHHHHHHHHhhcCC--C---CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHH
Q 003457 60 SSSGDLSYATRLFNSIQS--P---NHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCC 134 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~~--p---~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A 134 (818)
.+.+.+++|..+-+.... + -...+...|..+...|++++|-...-.|... +..-|...+..++..++....
T Consensus 367 l~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchh
Confidence 677888888888876652 2 2346778888888888888888888777654 555666666666665554332
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-----------------------CHHHHHHHHHHH
Q 003457 135 KQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR-----------------------TLNVWTTMISGY 191 (818)
Q Consensus 135 ~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~-----------------------d~~~~~~Li~~~ 191 (818)
..+ +-......+..+|..++..+.. .+.. .+++.+.+. +...-..|+..|
T Consensus 443 a~~---lPt~~~rL~p~vYemvLve~L~-~~~~---~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LY 515 (846)
T KOG2066|consen 443 APY---LPTGPPRLKPLVYEMVLVEFLA-SDVK---GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLY 515 (846)
T ss_pred hcc---CCCCCcccCchHHHHHHHHHHH-HHHH---HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHH
Confidence 221 1111122344556655555544 2111 111111111 112334477777
Q ss_pred HHcCChHHHHHHHHHHH
Q 003457 192 AQSFRANEALMLFDQML 208 (818)
Q Consensus 192 ~~~g~~~~A~~l~~~m~ 208 (818)
...+++..|++++-+.+
T Consensus 516 l~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 516 LYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHccChHHHHHHHHhcc
Confidence 77888888877776654
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.46 E-value=4.1 Score=41.65 Aligned_cols=58 Identities=17% Similarity=0.156 Sum_probs=37.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003457 186 TMISGYAQSFRANEALMLFDQMLMEGFEPNS---VTLASVLSACAQSGCLELGEKVHVFVKM 244 (818)
Q Consensus 186 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~t~~~ll~~~~~~g~~~~A~~i~~~~~~ 244 (818)
.+.+-|.+.|.+-.|..-+++|++. .+-+. ..+..+..+|...|-.++|.+.-.-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3456778888888888888888776 22222 3344556777777777777665554443
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.36 E-value=17 Score=44.77 Aligned_cols=149 Identities=14% Similarity=0.168 Sum_probs=85.1
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHHcCCHHHHHHHH
Q 003457 265 GALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVL----SACCHAGFIDVGRQIF 340 (818)
Q Consensus 265 g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll----~a~~~~g~~~~A~~~~ 340 (818)
+++++|+.-+.++. ...|.-.+..--+++.+.+|+.++ +|+...+..+. .-+.....+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34555555444443 122333333334555555555554 34554444443 3344456666666666
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 341 GSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVV--MWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 341 ~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~--~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
+..-+. .--+.+|..+|+|.+|+.+-.++....|.. +-..|..-+...++.-+|-++..+..+ +|
T Consensus 963 e~~Gkl----------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-d~-- 1029 (1265)
T KOG1920|consen 963 ERCGKL----------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-DP-- 1029 (1265)
T ss_pred HHhccH----------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-CH--
Confidence 553211 123556777888888888887775433433 236677788889998888888877654 22
Q ss_pred cchHHHHHHHHHHhhchHHHHHH
Q 003457 419 HGVYVVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 419 ~~~y~~L~~~l~~~G~~~eA~~l 441 (818)
...+..|+++-.|++|.++
T Consensus 1030 ----~~av~ll~ka~~~~eAlrv 1048 (1265)
T KOG1920|consen 1030 ----EEAVALLCKAKEWEEALRV 1048 (1265)
T ss_pred ----HHHHHHHhhHhHHHHHHHH
Confidence 2344566677777777773
No 259
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.32 E-value=0.086 Score=35.67 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
.+|..++..|...|++++|++.|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 568888999999999999999999999999973
No 260
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.17 E-value=16 Score=43.33 Aligned_cols=172 Identities=14% Similarity=0.073 Sum_probs=106.1
Q ss_pred HHHhhhhcCCCHHHHHHHHhhcCCCCHH---HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003457 54 LAFCALSSSGDLSYATRLFNSIQSPNHF---MWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRS 130 (818)
Q Consensus 54 l~~~a~~k~g~~e~A~~lf~~~~~p~~~---~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~ 130 (818)
+.+. .+...++.|..+-+.-..+... ....-.+.+.+.|++++|...|-+-... +.|. .++.-|....+
T Consensus 341 L~iL--~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 341 LDIL--FKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQR 412 (933)
T ss_pred HHHH--HHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHH
Confidence 4444 6777788888877765432222 2222334456789999999888776543 3332 24455566666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003457 131 LNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLN-VWTTMISGYAQSFRANEALMLFDQMLM 209 (818)
Q Consensus 131 ~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~-~~~~Li~~~~~~g~~~~A~~l~~~m~~ 209 (818)
..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+...+.... -....+..+.+.+-.++|..+-.+...
T Consensus 413 IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~ 491 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK 491 (933)
T ss_pred HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc
Confidence 77777788888888876 5556678899999999999888888776621111 134455666666666666655544322
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003457 210 EGFEPNSVTLASVLSACAQSGCLELGEKVHVFV 242 (818)
Q Consensus 210 ~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~ 242 (818)
.......+ +...+++++|.+++..+
T Consensus 492 -----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 492 -----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred -----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 22222332 33556777777766544
No 261
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.11 E-value=7.7 Score=39.60 Aligned_cols=242 Identities=16% Similarity=0.210 Sum_probs=125.5
Q ss_pred CCChHHHHHHHHHhhcC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHhcC
Q 003457 163 SSDLNNARQVFDEIRNR-------TLNVWTTMISGYAQSFRANEALMLFDQMLME---GF--EPNSVTLASVLSACAQSG 230 (818)
Q Consensus 163 ~g~~~~A~~l~~~m~~~-------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~---g~--~pd~~t~~~ll~~~~~~g 230 (818)
..+.++|+.-|+++.+- ...+...++..+.+.+++++.++.|++|+.- .+ .-+....+.++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 33555555555555431 2224445666666667777766666666321 11 123344555555555555
Q ss_pred ChhHHHHHHHHHHHc-----CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--------C-------ChhhHHHHHH
Q 003457 231 CLELGEKVHVFVKMR-----GFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--------R-------NIATWNAMIS 290 (818)
Q Consensus 231 ~~~~A~~i~~~~~~~-----g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--------~-------d~~~~~~Li~ 290 (818)
+.+.....|+.-++. +-..--.+-..|...|...+++.+-.++++++.. . -...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 555555554433321 0011112334566677777777777777766642 1 1346666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHhCCC--CC---HHHHHHH
Q 003457 291 GLASHGHAEEALDLFRKLEKE-QIVPNDITFVGVLSAC-----CHAGFIDVGRQIFGSMKRVYGIE--PK---IEHYGCM 359 (818)
Q Consensus 291 ~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~-----~~~g~~~~A~~~~~~m~~~~g~~--p~---~~~~~~L 359 (818)
.|..+++-.+...+|++.+.. .--|.+.... +++-| .+.|.+++|-.-|-++.+.+.-. |. -.-|..|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 888888888888888876542 2234444333 33333 34567777765444434332222 21 1234556
Q ss_pred HHHHHHcCC----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 360 VDLLGRCGK----VLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKE 410 (818)
Q Consensus 360 i~~~~~~g~----~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~ 410 (818)
.+++.+.|- -.+|. -.+..|.......|+.+|- ..++.+-+++++.
T Consensus 279 ANMLmkS~iNPFDsQEAK----PyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK----PYKNDPEILAMTNLVAAYQ-NNDIIEFERILKS 328 (440)
T ss_pred HHHHHHcCCCCCcccccC----CCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHh
Confidence 666666552 11110 0113355677788888774 4455555555543
No 262
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.08 E-value=17 Score=43.30 Aligned_cols=16 Identities=6% Similarity=0.324 Sum_probs=8.0
Q ss_pred cCCCHHHHHHHHhhcC
Q 003457 61 SSGDLSYATRLFNSIQ 76 (818)
Q Consensus 61 k~g~~e~A~~lf~~~~ 76 (818)
+.|++..+.++...+.
T Consensus 45 ~~g~~~~~~~~~~~l~ 60 (644)
T PRK11619 45 DNRQMDVVEQLMPTLK 60 (644)
T ss_pred HCCCHHHHHHHHHhcc
Confidence 4555555555554443
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.07 E-value=0.14 Score=34.51 Aligned_cols=33 Identities=33% Similarity=0.407 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
..|..+...+.+.|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 457778888999999999999999999999974
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=5.8 Score=41.35 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=35.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 003457 225 ACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE 279 (818)
Q Consensus 225 ~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~ 279 (818)
.....+++.+|...++...... +-+......|+++|...|+.+.|..++..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 3456677777777777777654 23344555677777777777777777777664
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.86 E-value=8.5 Score=42.98 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=74.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHH
Q 003457 189 SGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALA 268 (818)
Q Consensus 189 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~ 268 (818)
.-.-+..+++.-+++-++.++. .||-.+...++ +-.......++++++++.++.+-. .+-... ..+
T Consensus 176 q~AWRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-------~lg~s~----~~~ 241 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-------SLGKSQ----FLQ 241 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-------hhchhh----hhh
Confidence 3334455666666666666553 45443322222 222344567888888887776410 000000 000
Q ss_pred HHHHHHhhCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 269 KAKALFDSMPERN----IATWNAMISGLASHGHAEEALDLFRKLEKEQIVP-NDITFVGVLSACCHAGFIDVGRQIFGSM 343 (818)
Q Consensus 269 ~A~~~f~~m~~~d----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~~~~~m 343 (818)
..-..++.+..++ ..+-..|..+..+.|+.++|++.|++|.+....- +......|+.++...+.+.++..++.+.
T Consensus 242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 0001111122222 3334456666777788888888888887653221 2334556777788888888888777775
Q ss_pred H
Q 003457 344 K 344 (818)
Q Consensus 344 ~ 344 (818)
.
T Consensus 322 d 322 (539)
T PF04184_consen 322 D 322 (539)
T ss_pred c
Confidence 4
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.86 E-value=2.9 Score=46.46 Aligned_cols=121 Identities=8% Similarity=0.116 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC--CCC--HHHHHHHHHH
Q 003457 319 TFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVW--KPD--VVMWGALLAA 394 (818)
Q Consensus 319 t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--~pd--~~~~~~Li~a 394 (818)
.-..+..++.+.|+.++|.+.++++.+.+....+......|+.+|...+++.++..++.+-.. -|. ...|+..+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334567778899999999999999988633333466788999999999999999999998742 133 4556665433
Q ss_pred HHHcCC---------------HHHHHHHHHHHHhcCCCCcchHHHH------HHHHHHhhchHHHHH
Q 003457 395 CKNHGN---------------IEVAERVVKEIIALEPNNHGVYVVL------SNMYAEAESMKMQLE 440 (818)
Q Consensus 395 ~~~~g~---------------~~~A~~~~~~~~~~~P~~~~~y~~L------~~~l~~~G~~~eA~~ 440 (818)
+...++ -..|.+...++.+.+|.-+..+..+ -.-+.+.|+ .||+.
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAia 406 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIA 406 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHH
Confidence 333332 1346678899999888744322111 223456665 66666
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=1.1 Score=46.94 Aligned_cols=149 Identities=15% Similarity=0.016 Sum_probs=97.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHH----HHHHHHHHcCC
Q 003457 293 ASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYG----CMVDLLGRCGK 368 (818)
Q Consensus 293 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~----~Li~~~~~~g~ 368 (818)
..+|++.+|...++++++.- +-|...+...=.+|...|+...-+..+++++.. ..++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34577777777777777652 335556666667788888888877777777654 345544443 33344557888
Q ss_pred HHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHHhhchHHHHHHH
Q 003457 369 VLEAEELIKRM-VWK-PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPN----NHGVYVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 369 ~~~A~~~~~~m-~~~-pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~----~~~~y~~L~~~l~~~G~~~eA~~l~ 442 (818)
+++|++.-++. .+. -|...-.++...+...|+..++.++..+-...=-+ ...-|-..+-.+...+.++.|++++
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 88888888777 333 36677777777777888888888877654331111 1234555666677778888888876
Q ss_pred HH
Q 003457 443 LV 444 (818)
Q Consensus 443 ~~ 444 (818)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 43
No 268
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.80 E-value=0.92 Score=46.60 Aligned_cols=100 Identities=20% Similarity=0.192 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQIVP--NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK-IEHYGCMV 360 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~-~~~~~~Li 360 (818)
.|+.-+.. .+.|++.+|...|...++..+.- ....+..|..++...|+++.|..+|..+.+.++-.|. +..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35555443 34466888888887777753321 1345556777777888888888888777776544443 36667777
Q ss_pred HHHHHcCCHHHHHHHHHHcC-CCCC
Q 003457 361 DLLGRCGKVLEAEELIKRMV-WKPD 384 (818)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~m~-~~pd 384 (818)
....+.|+.++|...|++.. .-|+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 77777888888887777773 3354
No 269
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.78 E-value=3 Score=47.66 Aligned_cols=156 Identities=14% Similarity=0.070 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 003457 287 AMISGLASHGHAEEALDLFRKLEKE-QIVPND-----ITFVGVLSACC----HAGFIDVGRQIFGSMKRVYGIEPKIEHY 356 (818)
Q Consensus 287 ~Li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~-----~t~~~ll~a~~----~~g~~~~A~~~~~~m~~~~g~~p~~~~~ 356 (818)
.+++...-.|+-+.+++++.+..+. +++-.. ..|..++..++ ...+.+.+.++++.+.++ -|+...|
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~lf 269 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSALF 269 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHHH
Confidence 3444444456666666666655442 122111 12223332222 245678888999988875 4555544
Q ss_pred H-HHHHHHHHcCCHHHHHHHHHHcCC-C-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH-HHHHH
Q 003457 357 G-CMVDLLGRCGKVLEAEELIKRMVW-K-----PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYV-VLSNM 428 (818)
Q Consensus 357 ~-~Li~~~~~~g~~~~A~~~~~~m~~-~-----pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~-~L~~~ 428 (818)
. .-.+.+...|+.++|++.|+++.. + -....+--+...+....++++|.+.|.++.+.+.-+...|. ..+-+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3 445667788999999999997631 1 12345555666778889999999999999998776555554 44566
Q ss_pred HHHhhch-------HHHHHHHHHH
Q 003457 429 YAEAESM-------KMQLEILLVQ 445 (818)
Q Consensus 429 l~~~G~~-------~eA~~l~~~~ 445 (818)
+...|+. ++|.++++.+
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHH
Confidence 6788888 7777755544
No 270
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.74 E-value=0.19 Score=48.67 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=60.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHH
Q 003457 325 SACCHAGFIDVGRQIFGSMKRVYGIEPK-----IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD-VVMWGALLAACKN 397 (818)
Q Consensus 325 ~a~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a~~~ 397 (818)
+-+.+.|++++|..-|...+.. +++. ...|..-..++.+.+.++.|++-..++ .+.|. ...+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 3466677777777777777664 3332 234555555666677777776665555 23332 2333333445666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 003457 398 HGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAE 431 (818)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~ 431 (818)
..++++|++-|+++++++|...++....+++--.
T Consensus 181 ~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred hhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 6677777777777777777655444444443333
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.73 E-value=1.4 Score=49.64 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=85.0
Q ss_pred HHHcCChHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHH
Q 003457 191 YAQSFRANEALMLFD--QMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALA 268 (818)
Q Consensus 191 ~~~~g~~~~A~~l~~--~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~ 268 (818)
..-.++++++.+..+ ++.. .++ ......++.-+.+.|..+.|.++-..-. .-.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence 344566666655554 1111 111 3345666666677777777665433221 1234556777777
Q ss_pred HHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Q 003457 269 KAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYG 348 (818)
Q Consensus 269 ~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g 348 (818)
.|.++-+++. +...|..|.....++|+++-|++.|.+..+ +..|+-.|...|+.+.-.++.+....+ |
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 7777665554 555788888888888888888777776432 345555566677776666665554433 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 003457 349 IEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV 380 (818)
Q Consensus 349 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 380 (818)
-++....++...|+.++..+++.+..
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 13444455556677777777776664
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=0.55 Score=49.04 Aligned_cols=114 Identities=10% Similarity=0.079 Sum_probs=95.2
Q ss_pred HHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHH----HHHHHHHcCCH
Q 003457 328 CHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGA----LLAACKNHGNI 401 (818)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~----Li~a~~~~g~~ 401 (818)
-..|++.+|...++++.+. .+.|...+.-.-+++...|+.+.-...++++. -.+|...|.. +.-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3468888888899999886 78888888888899999999999999999883 2456543333 33356789999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHH
Q 003457 402 EVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILL 443 (818)
Q Consensus 402 ~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~ 443 (818)
++|++..+++++++|.+.-+...++.++.-.|+.+|+.++..
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 999999999999999999999999999999999999999653
No 273
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.68 E-value=0.85 Score=41.75 Aligned_cols=53 Identities=13% Similarity=0.178 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003457 312 QIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLG 364 (818)
Q Consensus 312 g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~ 364 (818)
...|+..++.+++.+|+..+++..|.++.+...+.++++-+...|..|++-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34577778888888888888888888888888887777777777777775443
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.60 E-value=1.8 Score=46.01 Aligned_cols=151 Identities=13% Similarity=0.162 Sum_probs=91.0
Q ss_pred cCCCCCCCCChhHHHHHHHHhcC-chHH----HHHHHHHHHhCCCCChHHHHHHHHHhhhhcC----CCHHHHHHHHhhc
Q 003457 5 CSSLRQPPLPIPPLSLLADKCKS-MHQL----KQIHAQMIISSRIQDHFAASRLLAFCALSSS----GDLSYATRLFNSI 75 (818)
Q Consensus 5 ~~~~~~~~p~~~tl~~ll~~c~~-~~~~----~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~----g~~e~A~~lf~~~ 75 (818)
+|++|+. ...+++++|..-.. ++.. ..+++.+.+.|+..+.+++-+...+...... -....|.++|+.|
T Consensus 52 fS~lr~~--~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~m 129 (297)
T PF13170_consen 52 FSPLRGN--HRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEM 129 (297)
T ss_pred ccccccc--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 5666643 45677777777666 4333 6888999999999998777765555511112 2345677788877
Q ss_pred CC-------CCHHHHHHHHHHHHhCCC----hhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCC--hHHHHHHHHH
Q 003457 76 QS-------PNHFMWNTLIRAQASSLN----PDKAIFLYMNMRRTGFAPNQH--TFTFVLKACSNVRS--LNCCKQIHTH 140 (818)
Q Consensus 76 ~~-------p~~~~yn~Li~~~~~~g~----~~~Al~lf~~m~~~g~~pd~~--ty~~ll~~~~~~g~--~~~A~~~~~~ 140 (818)
.+ ++-.++..|+.. ..++ .+.+..+|+.+.+.|...+.. ....++..+....+ ...+.++++.
T Consensus 130 Kk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~ 207 (297)
T PF13170_consen 130 KKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNA 207 (297)
T ss_pred HHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 63 444556666554 3333 245667777777766654433 33344443332222 3366777777
Q ss_pred HHHcCCCCCHHHHHHHHHH
Q 003457 141 VSKSGLDLDLHVVNCLVRC 159 (818)
Q Consensus 141 m~~~g~~p~~~~~~~Li~~ 159 (818)
+.+.|++.....|..+.-.
T Consensus 208 l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 208 LKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHcCCccccccccHHHHH
Confidence 7777777666666554433
No 275
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.58 E-value=3.2 Score=41.10 Aligned_cols=159 Identities=15% Similarity=0.135 Sum_probs=92.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003457 281 NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMV 360 (818)
Q Consensus 281 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li 360 (818)
-+..||-|.-.+...|+++.|.+.|+...+..+.-+-...|.-+ ++.--|+++.|.+-+.+.-+...-+|-...|.-+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 34678888888888899999999998888765443322222222 33446788888776666554312223233333332
Q ss_pred HHHHHcCCHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHHh
Q 003457 361 DLLGRCGKVLEAEELI-KRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN-------HGVYVVLSNMYAEA 432 (818)
Q Consensus 361 ~~~~~~g~~~~A~~~~-~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~-------~~~y~~L~~~l~~~ 432 (818)
...-++.+|..-+ ++.. +.|..-|...+..+. .|++.+ +.+++++.+-.-++ .++|..|+..+...
T Consensus 177 ---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2344667776544 4442 344444444443332 222211 12334443322232 47899999999999
Q ss_pred hchHHHHHHHHHHH
Q 003457 433 ESMKMQLEILLVQV 446 (818)
Q Consensus 433 G~~~eA~~l~~~~~ 446 (818)
|+.++|..+++..+
T Consensus 251 G~~~~A~~LfKLai 264 (297)
T COG4785 251 GDLDEATALFKLAV 264 (297)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999988764
No 276
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.57 E-value=2.5 Score=39.29 Aligned_cols=115 Identities=13% Similarity=0.116 Sum_probs=52.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003457 289 ISGLASHGHAEEALDLFRKLEKEQIVP--NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRC 366 (818)
Q Consensus 289 i~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~ 366 (818)
.....+.|++++|.+.|+.+...-+.. ....-..++.+|.+.+++++|...+++.++.+.-.|+ .-|-..+.++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 334445556666666665555442111 1233344555555556666666555555554222222 1122222222222
Q ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003457 367 GKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 367 g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~ 419 (818)
...+..+.-+- ..+ ...+....|...|++.++..|++.
T Consensus 96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 11111111110 101 111235688888899999888854
No 277
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.43 E-value=0.9 Score=41.04 Aligned_cols=89 Identities=17% Similarity=0.124 Sum_probs=53.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-C-CC-C---HHHHHHHHHHHHHcC
Q 003457 326 ACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-W-KP-D---VVMWGALLAACKNHG 399 (818)
Q Consensus 326 a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~-~p-d---~~~~~~Li~a~~~~g 399 (818)
+....|+++.|++.|.+.+.. .+.+...||.-..+|.-+|+.++|++-++++. . .+ . -..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 455667777777777776654 44566677777777777777777777666651 1 11 1 122333333466677
Q ss_pred CHHHHHHHHHHHHhcCC
Q 003457 400 NIEVAERVVKEIIALEP 416 (818)
Q Consensus 400 ~~~~A~~~~~~~~~~~P 416 (818)
+.+.|..-|+.+-+++.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777777766655543
No 278
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.26 E-value=23 Score=46.90 Aligned_cols=307 Identities=10% Similarity=0.030 Sum_probs=162.0
Q ss_pred HHHHHHHccCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH-hhcCCHHHHHHHHHHHHHc
Q 003457 120 FVLKACSNVRSLNCCKQIHTHV----SKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDE-IRNRTLNVWTTMISGYAQS 194 (818)
Q Consensus 120 ~ll~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~-m~~~d~~~~~~Li~~~~~~ 194 (818)
++..+-.+.+.+..|...++.- ++. ......+..+...|...++.|...-+... ...++ ....+......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~ 1462 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEAS 1462 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhh
Confidence 4444555667777777777763 111 11223455555688888888887777663 22222 22344456677
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHH-HHHHHHHHHHhCCCHHHHHHH
Q 003457 195 FRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAI-LGTALVHMYTKNGALAKAKAL 273 (818)
Q Consensus 195 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~-~~~~Li~~~~~~g~~~~A~~~ 273 (818)
|+++.|...|+++.+.+ ++...++.-++......+.++...-..+-..... .+... .++.=+.+--+.++++.....
T Consensus 1463 g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred ccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 99999999999998764 4446677777777777777777666555444332 22222 223334444677777777666
Q ss_pred HhhCCCCChhhHHHH--HHHHHHcC--CHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 274 FDSMPERNIATWNAM--ISGLASHG--HAEEALDLFRKLEKEQIVP---------NDITFVGVLSACCHAGFIDVGRQIF 340 (818)
Q Consensus 274 f~~m~~~d~~~~~~L--i~~~~~~g--~~~~A~~l~~~m~~~g~~p---------d~~t~~~ll~a~~~~g~~~~A~~~~ 340 (818)
.. ..+...|.+. +..+.+.. +.-.-.++.+.+++.-+.| -...|..++....-. ++.
T Consensus 1541 l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-------el~ 1610 (2382)
T KOG0890|consen 1541 LS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-------ELE 1610 (2382)
T ss_pred hh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-------HHH
Confidence 55 4445555544 22332222 2111122333333221111 011222222221111 010
Q ss_pred HHHHHHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHc----CCCC-----CHHHHHHHHHHHHHcCCHHHHH
Q 003457 341 GSMKRVYGIEPK------IEHYGCMVDLLGRCGKVLEAEELIKRM----VWKP-----DVVMWGALLAACKNHGNIEVAE 405 (818)
Q Consensus 341 ~~m~~~~g~~p~------~~~~~~Li~~~~~~g~~~~A~~~~~~m----~~~p-----d~~~~~~Li~a~~~~g~~~~A~ 405 (818)
.......+..++ ...|...+..-....+..+-+--+++. ..+| -..+|....+..+..|.++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111122222 122222222211122222222222222 1122 2567888888888899999998
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 406 RVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 406 ~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
...-++.+.. -++.+...+..+...|+-..|+.+++..
T Consensus 1691 nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1691 NALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred HHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 8887777665 3668888889999999988888865443
No 279
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.24 E-value=0.2 Score=52.33 Aligned_cols=92 Identities=17% Similarity=0.096 Sum_probs=57.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCC
Q 003457 324 LSACCHAGFIDVGRQIFGSMKRVYGIEP-KIEHYGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGN 400 (818)
Q Consensus 324 l~a~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~ 400 (818)
.+-|.++|.+++|+.+|...+. ..| |..++..-..+|.+.+++..|+.-...+. .+.-...|..-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777777776553 334 66666667777777777776666555542 11123445544555555667
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 003457 401 IEVAERVVKEIIALEPNN 418 (818)
Q Consensus 401 ~~~A~~~~~~~~~~~P~~ 418 (818)
..+|.+-++.++++.|++
T Consensus 181 ~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhHHHHHhhCccc
Confidence 777777777777777763
No 280
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.15 E-value=4.1 Score=39.83 Aligned_cols=81 Identities=19% Similarity=0.145 Sum_probs=55.3
Q ss_pred HHHHcCCHHHHHHHHHHcC--CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 362 LLGRCGKVLEAEELIKRMV--WKP-----DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 362 ~~~~~g~~~~A~~~~~~m~--~~p-----d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
-+.+.|++++|..-|..+. ..+ ....|..-..++.+.+.++.|+.-..++++++|.+..++..-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3556777777777776652 111 134555555566777777888877777888887777777777777777777
Q ss_pred hHHHHHHH
Q 003457 435 MKMQLEIL 442 (818)
Q Consensus 435 ~~eA~~l~ 442 (818)
+++|++-+
T Consensus 184 ~eealeDy 191 (271)
T KOG4234|consen 184 YEEALEDY 191 (271)
T ss_pred HHHHHHHH
Confidence 77777743
No 281
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.98 E-value=0.81 Score=41.34 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=70.1
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHHhhc
Q 003457 361 DLLGRCGKVLEAEELIKRM-VWK-PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN----HGVYVVLSNMYAEAES 434 (818)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~m-~~~-pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~----~~~y~~L~~~l~~~G~ 434 (818)
-++...|+.+.|++.|.+. ..- .....||+-..++.-+|+.++|++-+++++++.-+. -.+|..-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4578999999999999887 333 468899999999999999999999999999975332 2466777888999999
Q ss_pred hHHHHHHHHHH
Q 003457 435 MKMQLEILLVQ 445 (818)
Q Consensus 435 ~~eA~~l~~~~ 445 (818)
.+.|..-|+..
T Consensus 131 dd~AR~DFe~A 141 (175)
T KOG4555|consen 131 DDAARADFEAA 141 (175)
T ss_pred hHHHHHhHHHH
Confidence 99998866544
No 282
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.72 E-value=25 Score=41.35 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCCCCh
Q 003457 252 ILGTALVHMYTKNGALAKAKALFDSMPERNI 282 (818)
Q Consensus 252 ~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~ 282 (818)
.+...|+..|...+++.+|.+++-.+.++++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 3444588999999999999999988887543
No 283
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.63 E-value=0.91 Score=46.44 Aligned_cols=102 Identities=11% Similarity=0.148 Sum_probs=75.8
Q ss_pred CHHHHHHHHhhcC--CCCHHHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-------
Q 003457 64 DLSYATRLFNSIQ--SPNHFMWNTLIRAQASS-----LNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVR------- 129 (818)
Q Consensus 64 ~~e~A~~lf~~~~--~p~~~~yn~Li~~~~~~-----g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g------- 129 (818)
.+-..+..|+.+. ++|..+|-..+..+.+. +..+-....++.|++.|+.-|..+|+.|++.+-+..
T Consensus 49 ~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvf 128 (406)
T KOG3941|consen 49 SLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVF 128 (406)
T ss_pred cccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHH
Confidence 3344566677776 68888998888887654 556666777899999999999999999999875432
Q ss_pred ---------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 003457 130 ---------SLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSD 165 (818)
Q Consensus 130 ---------~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~ 165 (818)
+-+-+..++++|..+|+.||..+-..|++++.+.+-
T Consensus 129 Q~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 129 QKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223466777788888888888777777777766553
No 284
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.37 E-value=5.8 Score=39.78 Aligned_cols=52 Identities=6% Similarity=-0.093 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHcC-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 367 GKVLEAEELIKRMV-----WKPDV---VMWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 367 g~~~~A~~~~~~m~-----~~pd~---~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
.++++|+..|+... ...+. ..+..+..--...+++.+|+.+|++.....-++
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45566666665552 11122 222233333356778888888888877655444
No 285
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.31 E-value=5.7 Score=36.90 Aligned_cols=124 Identities=14% Similarity=0.055 Sum_probs=65.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003457 286 NAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR 365 (818)
Q Consensus 286 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~ 365 (818)
..++..+.+.+.......+++.+...+. .+...++.++..|++.+ .++....++. ..+.......++.|.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 3455566666667777777777666553 45556666666666543 2233333331 1122223345566666
Q ss_pred cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003457 366 CGKVLEAEELIKRMVWKPDVVMWGALLAACKNH-GNIEVAERVVKEIIALEPNNHGVYVVLSNMY 429 (818)
Q Consensus 366 ~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~-g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l 429 (818)
.+.++++..++.+++.. ...+..+.+. ++.+.|++++++ +.+++.|..++..+
T Consensus 82 ~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 82 AKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred cCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 67777777777766421 1122222333 667777776664 22344555555444
No 286
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.24 E-value=7.8 Score=35.97 Aligned_cols=43 Identities=19% Similarity=0.093 Sum_probs=24.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC
Q 003457 221 SVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKN 264 (818)
Q Consensus 221 ~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~ 264 (818)
.++..+.+.+.......+++.+.+.+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444555555666666666666554 34555666666666554
No 287
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.17 E-value=0.4 Score=50.09 Aligned_cols=78 Identities=17% Similarity=0.012 Sum_probs=43.7
Q ss_pred HHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 363 LGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 363 ~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
|.++|.+++|+..|.+. ...| |.+++..-..+|.+.+++..|+.-...++.++-....+|..-+.+-...|+.+||.+
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKK 186 (536)
T ss_pred hhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55566666666655543 2334 555555555555665555555555555555555555555555555555555555555
No 288
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.83 E-value=0.55 Score=45.14 Aligned_cols=35 Identities=29% Similarity=0.367 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 400 NIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 400 ~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
.+++|+.-|++++.++|+..+++.+++.+|...+.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 35777788888999999999999999999998775
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.64 E-value=20 Score=37.80 Aligned_cols=19 Identities=11% Similarity=-0.071 Sum_probs=13.1
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 003457 394 ACKNHGNIEVAERVVKEII 412 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~ 412 (818)
.+.+.+++++|.++|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556777888888777544
No 290
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.40 E-value=0.22 Score=33.42 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=22.7
Q ss_pred chHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 420 GVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 420 ~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
+.+..++.++.+.|++++|++.++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 578899999999999999999776664
No 291
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.23 E-value=8 Score=35.29 Aligned_cols=134 Identities=16% Similarity=0.203 Sum_probs=79.1
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003457 293 ASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEA 372 (818)
Q Consensus 293 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A 372 (818)
.-.|..++..++..+.... .+..-+|.++--....-+-+...+.++.+-+.+.+ ..+|+....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3457777888888777764 25566676665555555555555555554333211 234444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 373 EELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 373 ~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
...+-.+. .+.......++.+..+|+-+.-.++++...+-+-.+++.+.-++.+|.+.|+..+|.++++..
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 44444442 345556667778889999999888888887544445889999999999999999999977655
No 292
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.11 E-value=0.4 Score=32.23 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
.+|..+...|...|++++|.+.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35677888888999999999999999998885
No 293
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=90.72 E-value=4.1 Score=37.30 Aligned_cols=50 Identities=6% Similarity=0.093 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 003457 111 FAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKS-GLDLDLHVVNCLVRCY 160 (818)
Q Consensus 111 ~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~Li~~y 160 (818)
..|+..+..+++.+|+..+++..|.++.+.+.+. +++.+..+|..|++-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4566666666666666666666666666665543 4454555666666543
No 294
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.55 E-value=20 Score=35.74 Aligned_cols=171 Identities=11% Similarity=-0.003 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHH-HHHHHHH--HHHHcCChHHHHHHHHHHH
Q 003457 132 NCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLN-VWTTMIS--GYAQSFRANEALMLFDQML 208 (818)
Q Consensus 132 ~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~-~~~~Li~--~~~~~g~~~~A~~l~~~m~ 208 (818)
..|+--|.+.+...++ -+.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+-+ ++.--|++..|.+-|.+.-
T Consensus 82 ~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 82 ALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 3333334444443222 3467787777788888888888888888776554 2222222 2334578888877777665
Q ss_pred HcCCCCCH--HHHHHHHHHHHhcCChhHHHH-HHHHHHHcCCCCcHHHH-HHHHHHHHhCCCHHHHHHHHhhCCCC----
Q 003457 209 MEGFEPNS--VTLASVLSACAQSGCLELGEK-VHVFVKMRGFEMGAILG-TALVHMYTKNGALAKAKALFDSMPER---- 280 (818)
Q Consensus 209 ~~g~~pd~--~t~~~ll~~~~~~g~~~~A~~-i~~~~~~~g~~~~~~~~-~~Li~~~~~~g~~~~A~~~f~~m~~~---- 280 (818)
+.. +-|+ ..|..+.. +.-+..+|.. +.++..+. +..-| ..++..|.-.=..+.+.+-...-.+.
T Consensus 161 Q~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~ 232 (297)
T COG4785 161 QDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKADATDNTSL 232 (297)
T ss_pred hcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHH
Confidence 543 2222 22222221 2234444443 22333322 21111 22333333222222222221111111
Q ss_pred ---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003457 281 ---NIATWNAMISGLASHGHAEEALDLFRKLEKE 311 (818)
Q Consensus 281 ---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 311 (818)
-..+|.-|...|...|+.++|..+|+-.+..
T Consensus 233 Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 233 AEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2346777777777777777777777766654
No 295
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.33 E-value=37 Score=39.75 Aligned_cols=268 Identities=12% Similarity=0.025 Sum_probs=146.8
Q ss_pred hHHHHHHHHHhhcC-CHHHHHHHHHH-----HHHcCChHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC--
Q 003457 166 LNNARQVFDEIRNR-TLNVWTTMISG-----YAQSFRANEALMLFDQMLM-------EGFEPNSVTLASVLSACAQSG-- 230 (818)
Q Consensus 166 ~~~A~~l~~~m~~~-d~~~~~~Li~~-----~~~~g~~~~A~~l~~~m~~-------~g~~pd~~t~~~ll~~~~~~g-- 230 (818)
...|.+.++...+. +...-..+... +....+.+.|+.+|+.+.+ .+ +.....-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45677777776654 34333333322 3345678888888888766 44 2224455566665532
Q ss_pred ---ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC---CCHHHHHHHHhhCCCC-ChhhHHHHHHHHH----HcCCHH
Q 003457 231 ---CLELGEKVHVFVKMRGFEMGAILGTALVHMYTKN---GALAKAKALFDSMPER-NIATWNAMISGLA----SHGHAE 299 (818)
Q Consensus 231 ---~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~---g~~~~A~~~f~~m~~~-d~~~~~~Li~~~~----~~g~~~ 299 (818)
+.+.|..++....+.| .|+.... |..+|... .+...|.++|...-+. .+.++-.+..+|. -..+.+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 5567888888888776 3443333 33333322 3567888888777652 3333333333332 234678
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH---HHH----cCCHHHH
Q 003457 300 EALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDL---LGR----CGKVLEA 372 (818)
Q Consensus 300 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~---~~~----~g~~~~A 372 (818)
.|..++++.-+.| .|-.......+..+.. ++.+.+...+..+.+. +.+.-...-..+... ... ..+.+.+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 8888888888876 3332222223333333 6666666555555443 222111111111111 111 2256667
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh-h--chHHHHHHHHHH
Q 003457 373 EELIKRMVWKPDVVMWGALLAACKNH----GNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEA-E--SMKMQLEILLVQ 445 (818)
Q Consensus 373 ~~~~~~m~~~pd~~~~~~Li~a~~~~----g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~-G--~~~eA~~l~~~~ 445 (818)
...+.+...+-+......|.+.|..- .+.+.|...|.++.... ......++.++... | ++..|.++++..
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~ 535 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQA 535 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHH
Confidence 77777775555666666666655432 35788888887777665 56667777766532 1 156676665554
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.19 E-value=27 Score=36.80 Aligned_cols=62 Identities=19% Similarity=0.075 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003457 284 TWNAMISGLASHGHAE---EALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRV 346 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~ 346 (818)
+...++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+++.+.+.+|+..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4445555555554433 344455555433211 1233334455555566666677777766664
No 297
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.16 E-value=15 Score=33.66 Aligned_cols=60 Identities=10% Similarity=0.108 Sum_probs=33.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 003457 187 MISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGF 247 (818)
Q Consensus 187 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~ 247 (818)
-+.....+|+-|+-.++++.+.+.+ .+++....-+..+|.+.|+..++..++.++-+.|+
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445556666666666666665432 55666666666777777777777777766666653
No 298
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.10 E-value=2.1 Score=43.86 Aligned_cols=98 Identities=11% Similarity=0.126 Sum_probs=68.6
Q ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------
Q 003457 169 ARQVFDEIR--NRTLNVWTTMISGYAQS-----FRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSG----------- 230 (818)
Q Consensus 169 A~~l~~~m~--~~d~~~~~~Li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g----------- 230 (818)
.++.|.... ++|-.+|-+.+..+... +..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345555555 55666777777666543 445556667778888888888888888887654322
Q ss_pred -----ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Q 003457 231 -----CLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGA 266 (818)
Q Consensus 231 -----~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~ 266 (818)
+-+-+.+++++|...|+.||..+-..|++++.+.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 345677888888888888888888888888876664
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.78 E-value=0.28 Score=33.07 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 420 GVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 420 ~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
..|..++.+|...|++++|++.++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 578999999999999999999777664
No 300
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.76 E-value=47 Score=38.90 Aligned_cols=272 Identities=14% Similarity=0.088 Sum_probs=164.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhCCChHHHHHHHHHhhc-------C-CHHHHHHHHHHHHHcC--
Q 003457 131 LNCCKQIHTHVSKSGLDLDLHVVNCLVRC-----YSVSSDLNNARQVFDEIRN-------R-TLNVWTTMISGYAQSF-- 195 (818)
Q Consensus 131 ~~~A~~~~~~m~~~g~~p~~~~~~~Li~~-----y~~~g~~~~A~~l~~~m~~-------~-d~~~~~~Li~~~~~~g-- 195 (818)
...+.++++...+.| +......+..+ +....|.+.|..+|+...+ . ...+.+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 567888888888876 33332233322 4456789999999988865 2 3445667788887743
Q ss_pred ---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----CCCH
Q 003457 196 ---RANEALMLFDQMLMEGFEPNSVTLASVLSACAQ-SGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTK----NGAL 267 (818)
Q Consensus 196 ---~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~-~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~----~g~~ 267 (818)
+.+.|+.++.+.-+.| .|+...+...+..... ..+...|.++|..+.+.|.. ..+-.+..+|.. ..+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCH
Confidence 6788999999998887 5566554433332222 24678999999999998842 222233333332 3478
Q ss_pred HHHHHHHhhCCCCCh-hhHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHH---HH----cCCHHHH
Q 003457 268 AKAKALFDSMPERNI-ATWNAMIS--GLASHGHAEEALDLFRKLEKEQIVPNDITFVG-VLSAC---CH----AGFIDVG 336 (818)
Q Consensus 268 ~~A~~~f~~m~~~d~-~~~~~Li~--~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~---~~----~g~~~~A 336 (818)
..|..++++.-+.+. .+...+.. .+.. ++++.+...+..+.+.|.. ...+-.. ++... .. ..+.+.+
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHH
Confidence 899999988877552 32333322 2223 7777777777777766544 2211111 11111 11 1245555
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 003457 337 RQIFGSMKRVYGIEPKIEHYGCMVDLLGRC----GKVLEAEELIKRMVWKPDVVMWGALLAACKN----HGNIEVAERVV 408 (818)
Q Consensus 337 ~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~----g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~----~g~~~~A~~~~ 408 (818)
...+.+... .-+......|.+.|..- .+++.|...+.....+. ....-.+...+.+ .. +..|.+++
T Consensus 459 ~~~~~~a~~----~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~-~~~~~nlg~~~e~g~g~~~-~~~a~~~~ 532 (552)
T KOG1550|consen 459 FSLYSRAAA----QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG-AQALFNLGYMHEHGEGIKV-LHLAKRYY 532 (552)
T ss_pred HHHHHHHHh----ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh-hHHHhhhhhHHhcCcCcch-hHHHHHHH
Confidence 556655443 35566666666666443 35888888888885555 5444445443322 23 68888888
Q ss_pred HHHHhcCCC
Q 003457 409 KEIIALEPN 417 (818)
Q Consensus 409 ~~~~~~~P~ 417 (818)
+++.+.+.+
T Consensus 533 ~~~~~~~~~ 541 (552)
T KOG1550|consen 533 DQASEEDSR 541 (552)
T ss_pred HHHHhcCch
Confidence 888776655
No 301
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.68 E-value=28 Score=37.73 Aligned_cols=55 Identities=9% Similarity=-0.061 Sum_probs=33.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003457 187 MISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 187 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~ 245 (818)
...+..+.|+|+...+........ .++...+..+... +.++.+++..+.+.+...
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 356677888888855555444322 2334444433332 778888888888777654
No 302
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.65 E-value=18 Score=35.55 Aligned_cols=115 Identities=7% Similarity=-0.066 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 003457 300 EALDLFRKLEKEQIVPNDITFV--GVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAE 373 (818)
Q Consensus 300 ~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~ 373 (818)
+.....+++.....+-....+. .+...+...+++++|+..++..... +.| ...--.|.+.....|.+++|+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4455555555542221222222 2345677788999999888876632 222 223345677788999999999
Q ss_pred HHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 374 ELIKRMVWK-PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 374 ~~~~~m~~~-pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
..++....+ -.......-.+.+...|+.++|+..|+++++..++
T Consensus 147 ~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 147 KTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 999887522 12334455567899999999999999999998755
No 303
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.62 E-value=4.6 Score=41.17 Aligned_cols=180 Identities=9% Similarity=0.083 Sum_probs=103.7
Q ss_pred CHHHHHHHHhhCCC-------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHHcCCH
Q 003457 266 ALAKAKALFDSMPE-------RNIATWNAMISGLASHGHAEEALDLFRKLEKE---QI--VPNDITFVGVLSACCHAGFI 333 (818)
Q Consensus 266 ~~~~A~~~f~~m~~-------~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~---g~--~pd~~t~~~ll~a~~~~g~~ 333 (818)
+.++|+.-|++..+ -...+.-.++..+.+.+++++.++.|++|+.. .+ .-...+.+.++.......+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555554442 12234455667777777777777777776521 11 12345566666666555555
Q ss_pred HHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHcC-----------CCC---CHHHHHHHHHHH
Q 003457 334 DVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAEELIKRMV-----------WKP---DVVMWGALLAAC 395 (818)
Q Consensus 334 ~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~-----------~~p---d~~~~~~Li~a~ 395 (818)
+.-..+|+..........| ..+-.-|...|...+++.+..++++++. .+. -...|..-+..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5555555443322111112 2233456677777777777777777662 001 134566667778
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC--cchH----HHHHHHHHHhhchHHHHH-HHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALEPNN--HGVY----VVLSNMYAEAESMKMQLE-ILLVQ 445 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~--~~~y----~~L~~~l~~~G~~~eA~~-l~~~~ 445 (818)
...++-.+-..+|++++.+...- |... .|=+.+..+.|+|++|.. +|+..
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 88888888888888887765332 2222 233455678888888887 66554
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.15 E-value=0.65 Score=31.95 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 387 MWGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 387 ~~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777777777777777777544
No 305
>PRK09687 putative lyase; Provisional
Probab=88.97 E-value=34 Score=36.16 Aligned_cols=126 Identities=15% Similarity=0.018 Sum_probs=67.4
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 003457 280 RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAG-FIDVGRQIFGSMKRVYGIEPKIEHYGC 358 (818)
Q Consensus 280 ~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~ 358 (818)
++...-...+.++.+.++ ++++..+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .++..+...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 444444555555555554 3455655555542 34334344444444432 13345555554442 355566666
Q ss_pred HHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 359 MVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 359 Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
-+.++.+.|+ .+|+..+-+....++ .....+.++...|.. +|+..+.++.+..||
T Consensus 212 A~~aLg~~~~-~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 212 AIIGLALRKD-KRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred HHHHHHccCC-hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 6677777776 345544444422333 233456666777764 677777777776664
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.72 E-value=12 Score=35.68 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=45.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHH
Q 003457 327 CCHAGFIDVGRQIFGSMKRVYGIEPK---IEHYGCMVDLLGRCGKVLEAEELIKRMVW-KPDVVMWGALLAACKNHGNIE 402 (818)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-~pd~~~~~~Li~a~~~~g~~~ 402 (818)
-.+.++.+.+..++..+.. +.|. ..++.. ..+.+.|++.+|+.+|+++.. .|....-..|+..|....+-.
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 3445677777777777654 3443 223333 336677777777777777742 244444445554444433333
Q ss_pred HHHHHHHHHHhcCCC
Q 003457 403 VAERVVKEIIALEPN 417 (818)
Q Consensus 403 ~A~~~~~~~~~~~P~ 417 (818)
.=..+-+++++..++
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 333334555555544
No 307
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.46 E-value=65 Score=38.81 Aligned_cols=215 Identities=11% Similarity=0.008 Sum_probs=105.7
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHH-HHHhCCChHHHHHHHHHhhc--------CCHHHHHHHH
Q 003457 125 CSNVRSLNCCKQIHTHVSKSGLDLDLH-------VVNCLVR-CYSVSSDLNNARQVFDEIRN--------RTLNVWTTMI 188 (818)
Q Consensus 125 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~Li~-~y~~~g~~~~A~~l~~~m~~--------~d~~~~~~Li 188 (818)
.....++.+|..+..++...-..|+.. .++.|-. .....|++++|+++-+.... ..+..+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345677888888888776542222211 2232222 22346778888777766543 2445677777
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHhcCChh--HHHHHHHHHHHc---CCC---CcHHHHH
Q 003457 189 SGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVL-----SACAQSGCLE--LGEKVHVFVKMR---GFE---MGAILGT 255 (818)
Q Consensus 189 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-----~~~~~~g~~~--~A~~i~~~~~~~---g~~---~~~~~~~ 255 (818)
.+..-.|++++|..+.++..+..-.-+...+.... ..+...|+.. +....+...... ..+ +-..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 78888888888888877765542223333332222 2344555322 222222222211 001 1123334
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCC------CC--hh--hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHHH
Q 003457 256 ALVHMYTKNGALAKAKALFDSMPE------RN--IA--TWNAMISGLASHGHAEEALDLFRKLEKEQIV----PNDITFV 321 (818)
Q Consensus 256 ~Li~~~~~~g~~~~A~~~f~~m~~------~d--~~--~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~----pd~~t~~ 321 (818)
.+..++.+ ++.+..-...-.+ +. .. .+..|+..+...|+.++|...+.++...... ++..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 3333322222211 11 11 2235667777788888888888777653222 2222222
Q ss_pred HHHH--HHHHcCCHHHHHHHHHH
Q 003457 322 GVLS--ACCHAGFIDVGRQIFGS 342 (818)
Q Consensus 322 ~ll~--a~~~~g~~~~A~~~~~~ 342 (818)
..+. .....|+.+.+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 2222 22345666666555444
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.39 E-value=4.6 Score=45.75 Aligned_cols=104 Identities=17% Similarity=0.035 Sum_probs=66.7
Q ss_pred HHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003457 159 CYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKV 238 (818)
Q Consensus 159 ~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i 238 (818)
...+.|+++.|.++..+. .+..-|..|..+....+++..|.+.|.+... |..|+-.+...|+-+....+
T Consensus 646 lal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHH
Confidence 345677777777765443 3455677788888888888888877776543 44556666666776666666
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 003457 239 HVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE 279 (818)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~ 279 (818)
-....+.|. .+ .-..+|...|+++++.+++.+-.+
T Consensus 715 a~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 715 ASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHHhcCc
Confidence 666666652 22 223456677888888888766543
No 309
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.23 E-value=23 Score=34.11 Aligned_cols=134 Identities=16% Similarity=0.067 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhCCChHHHHHHHHHhhcC
Q 003457 101 FLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVN-CLVRCYSVSSDLNNARQVFDEIRNR 179 (818)
Q Consensus 101 ~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~Li~~y~~~g~~~~A~~l~~~m~~~ 179 (818)
+.++.+.+.++.|+...+..+++.+.+.|++....++ +..++-+|..... .|++.- +....+.++=-.|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHHHH
Confidence 4555666778888888999999999988887655443 4445544544333 232221 2223333333333333
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003457 180 TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 180 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~ 245 (818)
=...+..++..+...|++-+|+++.++.... +......++.+..+.+|...-..+++...+.
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2335667778888889998888888775322 1122234555656666655555555555543
No 310
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.64 E-value=42 Score=35.72 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CChhHHHHHHHHHHHcC
Q 003457 198 NEALMLFDQMLMEGFEPNSVTLASVLSACAQ--S----GCLELGEKVHVFVKMRG 246 (818)
Q Consensus 198 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~--~----g~~~~A~~i~~~~~~~g 246 (818)
++.+.+++.|.+.|+.-+..+|......... . ....++..+|+.|.+..
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H 133 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKH 133 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhC
Confidence 4556677778888877777666553333322 1 12456677777777663
No 311
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.28 E-value=2.8 Score=42.16 Aligned_cols=53 Identities=11% Similarity=-0.035 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 388 WGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 388 ~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
+.++-.++...|++-++++.-.+.+...|++..+|+.-+.+....=+.+||.+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~ 285 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKA 285 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence 33444455667777777777777777788877777777777776666677766
No 312
>PRK09687 putative lyase; Provisional
Probab=87.18 E-value=43 Score=35.34 Aligned_cols=231 Identities=9% Similarity=0.002 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003457 149 DLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRA----NEALMLFDQMLMEGFEPNSVTLASVLS 224 (818)
Q Consensus 149 ~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~ 224 (818)
|..+....+..+...|..+-...+..-+...|...-..-+.++.+.|+. +++...+..+... .++...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 4444445555555555433333333333344555555555556666553 3566666665333 445555555555
Q ss_pred HHHhcCCh-----hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcC-CH
Q 003457 225 ACAQSGCL-----ELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHG-HA 298 (818)
Q Consensus 225 ~~~~~g~~-----~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g-~~ 298 (818)
++...+.. ..+...+..+. ..++..+....+.++.+.++-+....+...+..+|...-..-+.++.+.+ +.
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~ 190 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN 190 (280)
T ss_pred HHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC
Confidence 55444321 12222222222 23455666666777777776443333344444455555444555555442 24
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 299 EEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKR 378 (818)
Q Consensus 299 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 378 (818)
.++...+..+.. .++...-...+.++.+.++. .+...+-...+. ++ .....+.++.+.|.. +|+..+.+
T Consensus 191 ~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 191 PDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred HHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 456666666654 34556666667777777764 444444444432 22 234567777777774 57777777
Q ss_pred cC-CCCCHHHHHHHHHHH
Q 003457 379 MV-WKPDVVMWGALLAAC 395 (818)
Q Consensus 379 m~-~~pd~~~~~~Li~a~ 395 (818)
+. ..||...-...+.+|
T Consensus 260 l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHhhCCChhHHHHHHHHH
Confidence 63 356666555555544
No 313
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.18 E-value=4.2 Score=38.61 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=32.7
Q ss_pred HcCCHHHHHHHHHHcC-CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 365 RCGKVLEAEELIKRMV-WKPDVVMWGAL-LAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 365 ~~g~~~~A~~~~~~m~-~~pd~~~~~~L-i~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
+.++.+++..+++.+. .+|.......+ ...+.+.|++.+|+++|+++.+..|..+.+-..++.++...|+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4455555555555552 33332211111 1123455555666555555555555544444444444444443
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.48 E-value=16 Score=35.67 Aligned_cols=94 Identities=14% Similarity=0.106 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC------HHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQIVPND--ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK------IEH 355 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~------~~~ 355 (818)
.+..+...|.+.|+.++|++.|.++.+....+.. ..+..+++.+...+++..+.....++........| ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3444555555555555555555555554333222 22334445555555555555555554432111111 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 356 YGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 356 ~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
|..|. +...+++.+|-+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 33466777776666555
No 315
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.36 E-value=79 Score=37.55 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=62.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCC-CCC-------HHHHHHHHHHHHHcCCHHHHHHHHH-------HHHHHhCCCCCHHHHH
Q 003457 293 ASHGHAEEALDLFRKLEKEQI-VPN-------DITFVGVLSACCHAGFIDVGRQIFG-------SMKRVYGIEPKIEHYG 357 (818)
Q Consensus 293 ~~~g~~~~A~~l~~~m~~~g~-~pd-------~~t~~~ll~a~~~~g~~~~A~~~~~-------~m~~~~g~~p~~~~~~ 357 (818)
+-.+++.+|...+++|.+... .|+ ...+....-.+...|+++.|+..|. ......+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 457899999999999876321 111 2222223334556799999999998 2222213333433333
Q ss_pred H--HHHHHHH--cCCHHH--HHHHHHHcC----CCC--CHHHHHHHH-HHHHHc--CCHHHHHHHHHHHHh
Q 003457 358 C--MVDLLGR--CGKVLE--AEELIKRMV----WKP--DVVMWGALL-AACKNH--GNIEVAERVVKEIIA 413 (818)
Q Consensus 358 ~--Li~~~~~--~g~~~~--A~~~~~~m~----~~p--d~~~~~~Li-~a~~~~--g~~~~A~~~~~~~~~ 413 (818)
. ++-.+.. .....+ +.++++.+. ..| +..++..++ .++... -...++...+.+.++
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~ 522 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALK 522 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHH
Confidence 2 2222222 223333 778888773 122 334444443 333221 123467776665554
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.59 E-value=1.8 Score=30.33 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
.+++.|...|...|++++|+++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3556666666666666666666666654
No 317
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.46 E-value=1.6 Score=28.83 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=23.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 388 WGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 388 ~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
+..+..++.+.|++++|.+.|+++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 3445666777888888888888888887763
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.29 E-value=5.7 Score=37.07 Aligned_cols=49 Identities=12% Similarity=0.068 Sum_probs=33.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 397 NHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
..++.+++..++..+.-+.|+.++.-..-+.++.+.|+|+||+++++..
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILREL 70 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhh
Confidence 4666777777777777777777777677777777777777777766544
No 319
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.25 E-value=1.5e+02 Score=39.84 Aligned_cols=308 Identities=10% Similarity=0.059 Sum_probs=157.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003457 85 TLIRAQASSLNPDKAIFLYMNM----RRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCY 160 (818)
Q Consensus 85 ~Li~~~~~~g~~~~Al~lf~~m----~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y 160 (818)
.|..+-.+.+.+.+|+..+++- ++. .-...-|..+...|...++++...-+...... +...+. .|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHH
Confidence 3444555678888999888873 221 11233444555589999999988777664211 222222 34445
Q ss_pred HhCCChHHHHHHHHHhhcCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCChhHHH
Q 003457 161 SVSSDLNNARQVFDEIRNRTL---NVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVL-SACAQSGCLELGE 236 (818)
Q Consensus 161 ~~~g~~~~A~~l~~~m~~~d~---~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~~~~~~g~~~~A~ 236 (818)
...|+++.|...|+.+.+.+. ..++-++......+.++.++...+-.... ..+....++.+- .+-=+.++++...
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 678999999999999987543 36777777777778887777766555443 233333333322 3334566777766
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhCCC---HH--HHHHHHhhC-CC--------C-ChhhHHHHHHHHHHcCCHHHH
Q 003457 237 KVHVFVKMRGFEMGAILGTALVHMYTKNGA---LA--KAKALFDSM-PE--------R-NIATWNAMISGLASHGHAEEA 301 (818)
Q Consensus 237 ~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~---~~--~A~~~f~~m-~~--------~-d~~~~~~Li~~~~~~g~~~~A 301 (818)
..+. ..+.. +-.+. .++....+..+ +. +.++..+.. .+ . -...|..++....-..-....
T Consensus 1539 ~~l~---~~n~e-~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1539 SYLS---DRNIE-YWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hhhh---ccccc-chhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 11111 11111 12222221111 11 011111111 00 0 012344444333221111111
Q ss_pred HHHHHHHHHcCCCCCHHH------HHHHH---HHHHHcCCHHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHHcC
Q 003457 302 LDLFRKLEKEQIVPNDIT------FVGVL---SACCHAGFIDVGRQIFGSMKRVYGIEP-----KIEHYGCMVDLLGRCG 367 (818)
Q Consensus 302 ~~l~~~m~~~g~~pd~~t------~~~ll---~a~~~~g~~~~A~~~~~~m~~~~g~~p-----~~~~~~~Li~~~~~~g 367 (818)
.. . .+..++..+ |..-+ ..+.+ ..+-+-.+++..-.....| -..+|....+...+.|
T Consensus 1614 ~~----l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~---~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG 1684 (2382)
T KOG0890|consen 1614 EE----L--KKVSYDEDSANNSDNWKNRLERTQPSFR---IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAG 1684 (2382)
T ss_pred HH----h--hccCccccccccchhHHHHHHHhchhHH---HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcc
Confidence 11 1 112222111 11111 11111 1111112222111101222 2578888888888899
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003457 368 KVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALE 415 (818)
Q Consensus 368 ~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~ 415 (818)
+++.|...+-++....-...+.-.+.-+.+.|+...|+.++++.++++
T Consensus 1685 ~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1685 HLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 999999877666422234455556667789999999999999998643
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.77 E-value=8.6 Score=37.55 Aligned_cols=64 Identities=9% Similarity=0.061 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHc
Q 003457 81 FMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQ--HTFTFVLKACSNVRSLNCCKQIHTHVSKS 144 (818)
Q Consensus 81 ~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~--~ty~~ll~~~~~~g~~~~A~~~~~~m~~~ 144 (818)
..+..+...|.+.|+.++|++.|.++.+....+.. ..+..+++.+...+++..+.....++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667777778888888888888877775444333 35666777777777777777776665543
No 321
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.75 E-value=1 Score=30.11 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=23.6
Q ss_pred chHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 420 GVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 420 ~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
+.|..++.+|...|++++|.+.++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468899999999999999999777664
No 322
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=83.53 E-value=1.1e+02 Score=36.91 Aligned_cols=211 Identities=13% Similarity=0.042 Sum_probs=108.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCcH-------HHHHHH-HHHHHhCCCHHHHHHHHhhCCC--------CChhhHHHHHH
Q 003457 227 AQSGCLELGEKVHVFVKMRGFEMGA-------ILGTAL-VHMYTKNGALAKAKALFDSMPE--------RNIATWNAMIS 290 (818)
Q Consensus 227 ~~~g~~~~A~~i~~~~~~~g~~~~~-------~~~~~L-i~~~~~~g~~~~A~~~f~~m~~--------~d~~~~~~Li~ 290 (818)
....++.+|..+..++...-..|+. ..+++| .......|+.++|.++-+...+ ..+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4567788888888877765222221 122222 2233456777887776665443 35566777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---H--HHHHHHcCCH--HHHHHHHHHHHHHhCC--CC---CHHHHHH
Q 003457 291 GLASHGHAEEALDLFRKLEKEQIVPNDITFVG---V--LSACCHAGFI--DVGRQIFGSMKRVYGI--EP---KIEHYGC 358 (818)
Q Consensus 291 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~---l--l~a~~~~g~~--~~A~~~~~~m~~~~g~--~p---~~~~~~~ 358 (818)
+..-.|++++|..+.++..+..-+-+...+.. + ...+..+|.. ++.+..|......+.. +. -..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 88888999999888877665322223332222 2 1235556632 2333333333222111 11 1234444
Q ss_pred HHHHHHHcCCHHHHHHHHHHc----C-CCCC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCcchHH---H
Q 003457 359 MVDLLGRCGKVLEAEELIKRM----V-WKPD--VVM--WGALLAACKNHGNIEVAERVVKEIIALE--PNNHGVYV---V 424 (818)
Q Consensus 359 Li~~~~~~g~~~~A~~~~~~m----~-~~pd--~~~--~~~Li~a~~~~g~~~~A~~~~~~~~~~~--P~~~~~y~---~ 424 (818)
+..++.+ ++.+..-.... . ..|. ... +..|+......|+.++|...++++..+- ++....|. +
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 44443333222 1 1122 122 2356667778899999988888877643 32111221 2
Q ss_pred HHH--HHHHhhchHHHHH
Q 003457 425 LSN--MYAEAESMKMQLE 440 (818)
Q Consensus 425 L~~--~l~~~G~~~eA~~ 440 (818)
.+. .....|+.++|..
T Consensus 663 ~v~~~lwl~qg~~~~a~~ 680 (894)
T COG2909 663 KVKLILWLAQGDKELAAE 680 (894)
T ss_pred HhhHHHhcccCCHHHHHH
Confidence 222 2235677777666
No 323
>PRK10941 hypothetical protein; Provisional
Probab=83.45 E-value=3.9 Score=42.73 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHH
Q 003457 387 MWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILL 443 (818)
Q Consensus 387 ~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~ 443 (818)
..+++-.+|.+.++++.|+++.+.++.+.|+++.-+.--+.+|.+.|.+..|..=++
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~ 239 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLS 239 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 345666678888888888888888888888888888888888888888888888433
No 324
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=83.31 E-value=0.99 Score=49.76 Aligned_cols=83 Identities=16% Similarity=0.045 Sum_probs=47.3
Q ss_pred HHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 363 LGRCGKVLEAEELIKRM-VWKPD-VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 363 ~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
+.+.++++.|..++.++ ...|| +..|..-..++.+.+++..|+.-+.++++.+|....+|..-+.++.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 33455556666666555 23443 23333333455666666666666666666666666666666666666666666666
Q ss_pred HHHHH
Q 003457 441 ILLVQ 445 (818)
Q Consensus 441 l~~~~ 445 (818)
.++.+
T Consensus 94 ~l~~~ 98 (476)
T KOG0376|consen 94 DLEKV 98 (476)
T ss_pred HHHHh
Confidence 44443
No 325
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.30 E-value=1.1e+02 Score=36.47 Aligned_cols=395 Identities=11% Similarity=0.038 Sum_probs=202.9
Q ss_pred HHHHHHHHHhhhhcCCCHHHHHHHHhhcC----CCCHH-----HHHHHHHHHHhCCChhHHHHHHHHHHHcC----CCCC
Q 003457 48 FAASRLLAFCALSSSGDLSYATRLFNSIQ----SPNHF-----MWNTLIRAQASSLNPDKAIFLYMNMRRTG----FAPN 114 (818)
Q Consensus 48 ~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~----~p~~~-----~yn~Li~~~~~~g~~~~Al~lf~~m~~~g----~~pd 114 (818)
.++-.+..++ +....+++.|+..+++.. +++.. ....+++.+.+.+... |...+++..+.- ..+-
T Consensus 60 ~~~l~la~iL-~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 60 RVRLRLASIL-LEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Confidence 3444444555 357889999999999874 22222 2335566676666555 888888866531 2222
Q ss_pred HHHHHHH-HHHHHccCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH--hCCChHHHHHHHHHhhc----------
Q 003457 115 QHTFTFV-LKACSNVRSLNCCKQIHTHVSKSG---LDLDLHVVNCLVRCYS--VSSDLNNARQVFDEIRN---------- 178 (818)
Q Consensus 115 ~~ty~~l-l~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~Li~~y~--~~g~~~~A~~l~~~m~~---------- 178 (818)
...|..+ +..+...++...|.+.++.+.... ..+...++-.++.+.. +.+..+++.+.++++..
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCC
Confidence 2344444 333334479999999998887653 2334444545554443 45555666666665521
Q ss_pred ---CCHHHHHHHHHH--HHHcCChHHHHHHHHHHHHc---C--CC-------------------------CCH-------
Q 003457 179 ---RTLNVWTTMISG--YAQSFRANEALMLFDQMLME---G--FE-------------------------PNS------- 216 (818)
Q Consensus 179 ---~d~~~~~~Li~~--~~~~g~~~~A~~l~~~m~~~---g--~~-------------------------pd~------- 216 (818)
+...+|..++.. +...|+++.+...++++.+. . .. +..
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~ 297 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKE 297 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHH
Confidence 123466666654 45567777777766665321 0 00 101
Q ss_pred --HHHHHHHHHH--HhcCChhHHHHHHHHHHHc--------CCCCcH--------HHHHH---------HHHHHHhCCCH
Q 003457 217 --VTLASVLSAC--AQSGCLELGEKVHVFVKMR--------GFEMGA--------ILGTA---------LVHMYTKNGAL 267 (818)
Q Consensus 217 --~t~~~ll~~~--~~~g~~~~A~~i~~~~~~~--------g~~~~~--------~~~~~---------Li~~~~~~g~~ 267 (818)
..+..++.+. ...+..+++.+++++..+. ...+.. ..+.. .+-..+-.+++
T Consensus 298 ~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~ 377 (608)
T PF10345_consen 298 ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW 377 (608)
T ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 1122222222 3344455666666555432 001110 11111 12223456788
Q ss_pred HHHHHHHhhCCC-----CC-------hhhHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHH--HH
Q 003457 268 AKAKALFDSMPE-----RN-------IATWNAMISGLASHGHAEEALDLFR--------KLEKEQIVPNDITFVGV--LS 325 (818)
Q Consensus 268 ~~A~~~f~~m~~-----~d-------~~~~~~Li~~~~~~g~~~~A~~l~~--------~m~~~g~~pd~~t~~~l--l~ 325 (818)
..|...++.+.+ ++ +..+....-.+...|+.+.|+..|. .....+...+...+..+ +.
T Consensus 378 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~ 457 (608)
T PF10345_consen 378 SKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAI 457 (608)
T ss_pred HHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHH
Confidence 888888887763 11 1223333334556799999999998 34444444443333221 11
Q ss_pred HHHH--cCCHHH--HHHHHHHHHHHhCCCCC--HHHHHHH-HHHHHHc---------CCHHHHHHHH-HHcCCCCC-HHH
Q 003457 326 ACCH--AGFIDV--GRQIFGSMKRVYGIEPK--IEHYGCM-VDLLGRC---------GKVLEAEELI-KRMVWKPD-VVM 387 (818)
Q Consensus 326 a~~~--~g~~~~--A~~~~~~m~~~~g~~p~--~~~~~~L-i~~~~~~---------g~~~~A~~~~-~~m~~~pd-~~~ 387 (818)
.+.. ..+.++ ..++++.+.......++ ..++..+ +.++... ..+.++++.+ ++....-- ..+
T Consensus 458 I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~ 537 (608)
T PF10345_consen 458 ILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAIL 537 (608)
T ss_pred HhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 2222 222333 66666665443222332 3333333 3333211 1233444444 33321111 122
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCcc-hH-----HHHHHHHHHhhchHHHHHHHHHH
Q 003457 388 WGALLAACKNHGNIEVAERVVKEIIAL---EPNNHG-VY-----VVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 388 ~~~Li~a~~~~g~~~~A~~~~~~~~~~---~P~~~~-~y-----~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
++.+...+. .|+..+..+....+.++ .||... .| ..+.+.|...|+.++|.+.....
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 333333333 78888877776655543 244333 22 35566788999999999877655
No 326
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=83.22 E-value=2.5 Score=29.00 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 285 WNAMISGLASHGHAEEALDLFRKLE 309 (818)
Q Consensus 285 ~~~Li~~~~~~g~~~~A~~l~~~m~ 309 (818)
|..|...|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666633
No 327
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.69 E-value=47 Score=31.96 Aligned_cols=125 Identities=10% Similarity=0.040 Sum_probs=72.1
Q ss_pred hhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHc-CCCCCHH
Q 003457 73 NSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKS-GLDLDLH 151 (818)
Q Consensus 73 ~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~ 151 (818)
+.-..++...|..+++.+.+.|++.. +.++...++-+|.......+-.+. +....+.++--+|.++ + .
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~-----~ 90 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLG-----T 90 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhh-----h
Confidence 33345677778888888888877544 344455566667766655553332 2334444444444443 1 1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003457 152 VVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQML 208 (818)
Q Consensus 152 ~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 208 (818)
.+..+++.+...|++-+|.++.++....+......++.+..+.+|...=..+|+-..
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 245566777888888888888877644433344455555555555554444444443
No 328
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.61 E-value=91 Score=35.20 Aligned_cols=175 Identities=11% Similarity=0.063 Sum_probs=108.0
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 249 MGAILGTALVHMYTKNGALAKAKALFDSMPE--RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSA 326 (818)
Q Consensus 249 ~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 326 (818)
.|.....+++..+..+..+.-.+.+-.+|.+ .+-..|..++++|.++ ..++-..+++++.+..+. |.+.-..|...
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3444455666777766666666666666664 4556677778888877 556677788877776332 33333344444
Q ss_pred HHHcCCHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCCCHHHHHHHHHHHH
Q 003457 327 CCHAGFIDVGRQIFGSMKRVYGIEPK------IEHYGCMVDLLGRCGKVLEAEELIKRMV----WKPDVVMWGALLAACK 396 (818)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~g~~p~------~~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~pd~~~~~~Li~a~~ 396 (818)
|.+ .+.+.+..+|.++..+ +-|. ...|..|... -..+.+.-+.+..++. ...-...+..+-.-|.
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 444 7777777888777655 3331 2344444421 1345555666555552 2233555666666777
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 397 NHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
...++++|++++..+++.+-.+..+.-.++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 8888999999998888887766666666655443
No 329
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.15 E-value=33 Score=37.69 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=49.4
Q ss_pred CHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHH-HhhchHHHHHHHHHH
Q 003457 384 DVVMWGAL---LAACKNHGNIEVAERVVKEIIALEPN-NHGVYVVLSNMYA-EAESMKMQLEILLVQ 445 (818)
Q Consensus 384 d~~~~~~L---i~a~~~~g~~~~A~~~~~~~~~~~P~-~~~~y~~L~~~l~-~~G~~~eA~~l~~~~ 445 (818)
|...|.++ +..+.+.|-+..|.++.+-++.++|+ |+-.-..+++.|+ ++++++--+++.+.+
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 44444444 45678999999999999999999999 8888888888886 888888777766654
No 330
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.83 E-value=56 Score=32.19 Aligned_cols=56 Identities=13% Similarity=-0.019 Sum_probs=24.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003457 188 ISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 188 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~ 245 (818)
.+.....|.+|+|+..++...+.+. .......-..++...|+.++|+.-|+..+..
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3444455555555555544433211 1111222234455555555555555555544
No 331
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.47 E-value=1.3e+02 Score=36.04 Aligned_cols=269 Identities=9% Similarity=-0.038 Sum_probs=136.4
Q ss_pred CCHHHHHHHHhhcCC-CCHHH-HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 003457 63 GDLSYATRLFNSIQS-PNHFM-WNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTH 140 (818)
Q Consensus 63 g~~e~A~~lf~~~~~-p~~~~-yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~ 140 (818)
...++...++++-+. |-... -..-+..+.+.+++...+.++.. ...+...-...+.+....|+.++|......
T Consensus 80 ~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~ 154 (644)
T PRK11619 80 QPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKE 154 (644)
T ss_pred CCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 357777777776653 32222 22334455567777766663311 233555556667777777887766665555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh----hcCCHHHHHHHHHHH-----------HH-cCChHHHHHHH
Q 003457 141 VSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEI----RNRTLNVWTTMISGY-----------AQ-SFRANEALMLF 204 (818)
Q Consensus 141 m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m----~~~d~~~~~~Li~~~-----------~~-~g~~~~A~~l~ 204 (818)
+=..|. .....+..+++.+.+.|.+.... +..+| ...+...-..|.... .. ..+...+...+
T Consensus 155 lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~ 232 (644)
T PRK11619 155 LWLTGK-SLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFA 232 (644)
T ss_pred HhccCC-CCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHh
Confidence 544442 24455666666666555443321 11111 112222212221111 00 01122222211
Q ss_pred HHHHHcCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHcC-CCCc--HHHHHHHHHHHHhCCCHHHHHHHHhhCCC
Q 003457 205 DQMLMEGFEPNSVTLASVLSAC--AQSGCLELGEKVHVFVKMRG-FEMG--AILGTALVHMYTKNGALAKAKALFDSMPE 279 (818)
Q Consensus 205 ~~m~~~g~~pd~~t~~~ll~~~--~~~g~~~~A~~i~~~~~~~g-~~~~--~~~~~~Li~~~~~~g~~~~A~~~f~~m~~ 279 (818)
.. ++|+...-..++-++ ....+.+.|...+....... ..+. ..+...++......+..++|...++....
T Consensus 233 ~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~ 307 (644)
T PRK11619 233 RT-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM 307 (644)
T ss_pred hc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc
Confidence 11 223321111111122 13445677888887764442 2222 12333444333343335667777776543
Q ss_pred C--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 280 R--NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMK 344 (818)
Q Consensus 280 ~--d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~ 344 (818)
. +.....-.+..-...++++.+...+..|-... .-...-...+.+++...|+.++|...|+.+.
T Consensus 308 ~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 308 RSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred ccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2 44444444455557888888888888875432 2244556678888888899999999888864
No 332
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=81.14 E-value=87 Score=34.68 Aligned_cols=26 Identities=8% Similarity=-0.157 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHH
Q 003457 83 WNTLIRAQASSLNPDKAIFLYMNMRR 108 (818)
Q Consensus 83 yn~Li~~~~~~g~~~~Al~lf~~m~~ 108 (818)
-|-++..|...|+..+|.++.+++..
T Consensus 217 In~~l~eyv~~getrea~rciR~L~v 242 (645)
T KOG0403|consen 217 INGNLIEYVEIGETREACRCIRELGV 242 (645)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhCC
Confidence 34566778888888888888777654
No 333
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.80 E-value=56 Score=31.53 Aligned_cols=131 Identities=7% Similarity=0.026 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 003457 79 NHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQH-TFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLH-VVNCL 156 (818)
Q Consensus 79 ~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~-ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~L 156 (818)
+-..|..-++. ++.+..++|+.-|..+.+.|..--.. ..........+.|+...|...|+++-+....|-.. -...|
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 34445444443 45667777777777777766542111 12222334556677777777777766554333322 11111
Q ss_pred --HHHHHhCCChHHHHHHHHHhhcC-CH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 003457 157 --VRCYSVSSDLNNARQVFDEIRNR-TL---NVWTTMISGYAQSFRANEALMLFDQMLME 210 (818)
Q Consensus 157 --i~~y~~~g~~~~A~~l~~~m~~~-d~---~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 210 (818)
.-.+...|.++......+-+... ++ ..-.+|.-+-.+.|++.+|...|.++...
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11233456666655555544332 21 23455666666667777777777666543
No 334
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.64 E-value=15 Score=38.45 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCcHHHHHH
Q 003457 182 NVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKM-----RGFEMGAILGTA 256 (818)
Q Consensus 182 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~-----~g~~~~~~~~~~ 256 (818)
.++..++..+...++++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 356667777777777777777777777664 55667777777777777777777777776665 356666555544
Q ss_pred HHH
Q 003457 257 LVH 259 (818)
Q Consensus 257 Li~ 259 (818)
..+
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 333
No 335
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=80.20 E-value=2.6 Score=28.60 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH
Q 003457 350 EPKIEHYGCMVDLLGRCGKVLEAE 373 (818)
Q Consensus 350 ~p~~~~~~~Li~~~~~~g~~~~A~ 373 (818)
+-|...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334556666666666666666554
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.14 E-value=2.1 Score=28.19 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 421 VYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 421 ~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
++..++.++.+.|++++|.+.++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 57789999999999999999887774
No 337
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.02 E-value=3.6 Score=25.87 Aligned_cols=31 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 387 MWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 387 ~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
.|..+...+...+++++|...+++.+++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566677777788888888888888877765
No 338
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.54 E-value=7.7 Score=29.44 Aligned_cols=35 Identities=23% Similarity=0.287 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH
Q 003457 389 GALLAACKNHGNIEVAERVVKEIIALEPNNHGVYV 423 (818)
Q Consensus 389 ~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~ 423 (818)
..+.-++.+.|++++|.+..+.++++.|++..+..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34566789999999999999999999999765544
No 339
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.76 E-value=7.9 Score=38.48 Aligned_cols=49 Identities=12% Similarity=0.204 Sum_probs=26.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 392 LAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 392 i~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
++.+.+.+..++|+...++-++.+|.+......|.++|+-.|+|++|..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~ 56 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALA 56 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHH
Confidence 3344445555555555555555555555555555555555555555554
No 340
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.75 E-value=5.5 Score=40.10 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 368 KVLEAEELIKRM-VWKPDV-VMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 368 ~~~~A~~~~~~m-~~~pd~-~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
++..|+..|-++ .+.|.. ..|..-+-.+.+..+++.+..--++++++.|+....++.++..+.....+++|+.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 344444443333 233433 3333334444445555555555555555555555555555555555555555555
No 341
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.43 E-value=67 Score=31.03 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=11.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 003457 323 VLSACCHAGFIDVGRQIFGSMKR 345 (818)
Q Consensus 323 ll~a~~~~g~~~~A~~~~~~m~~ 345 (818)
|.-+-.+.|++..|.+.|..+..
T Consensus 173 LglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc
Confidence 33344445555555555555443
No 342
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=78.31 E-value=40 Score=30.35 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=55.5
Q ss_pred CCeeEEecCCccce--eeeeccccCCCeEEEEEecCcccCccccceEEEEeeCC----cceeeEEEecc-cCCceeeeEE
Q 003457 686 GNAAIEIVSVSAGI--QTATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGS----LVQNFTVQSLG-TGSVIKHSVT 758 (818)
Q Consensus 686 g~~~~~l~~~~~~~--q~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~ 758 (818)
|.+.+-....++.+ ..+. ...+..|.|+|..+..... ..+.+.+.+ ....+++...+ -..|.+.+..
T Consensus 21 ~~~~~~~~~~G~~~~~~~Vd--~~~~g~y~~~~~~a~~~~~----~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~ 94 (125)
T PF03422_consen 21 GGYVVGYIENGDWIEYNNVD--VPEAGTYTLTIRYANGGGG----GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVS 94 (125)
T ss_dssp TSEEEESSSTTTEEEEEEEE--ESSSEEEEEEEEEEESSSS----EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEE
T ss_pred CceEEecccCCCEEEEEEEe--eCCCceEEEEEEEECCCCC----cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEE
Confidence 55555554544333 4466 6788999999886543322 567888876 34566664433 2335555555
Q ss_pred EEeccceeeEEEEeCcccccCCCCccccccceeeee
Q 003457 759 FKAGSGSTPISFISYNINQTKDGVFCGPLIDDVVLR 794 (818)
Q Consensus 759 f~a~~~~~~~~f~~~~~~~~~~~~~~gp~~d~v~~~ 794 (818)
.......=+|.|...+.. . |.+=||.+.+.
T Consensus 95 v~l~~G~h~i~l~~~~~~---~---~~~niD~~~f~ 124 (125)
T PF03422_consen 95 VKLPAGKHTIYLVFNGGD---G---WAFNIDYFQFT 124 (125)
T ss_dssp EEEESEEEEEEEEESSSS---S---B-EEEEEEEEE
T ss_pred EeeCCCeeEEEEEEECCC---C---ceEEeEEEEEE
Confidence 555544445555553332 2 66778988774
No 343
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.16 E-value=1.6e+02 Score=35.12 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=34.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-------hHHHHHHHHHHHHcC
Q 003457 85 TLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRS-------LNCCKQIHTHVSKSG 145 (818)
Q Consensus 85 ~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~-------~~~A~~~~~~m~~~g 145 (818)
.+|-.+.+.|++++|.++..+.... .......|...+..+....+ -+....-+++.++..
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 4566677888888888888555443 44445566666777665422 234455555555443
No 344
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.70 E-value=1.6e+02 Score=35.01 Aligned_cols=61 Identities=23% Similarity=0.232 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhCCC-------hhHHHHHHHHHHHc
Q 003457 46 DHFAASRLLAFCALSSSGDLSYATRLFNSIQ---SPNHFMWNTLIRAQASSLN-------PDKAIFLYMNMRRT 109 (818)
Q Consensus 46 d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~---~p~~~~yn~Li~~~~~~g~-------~~~Al~lf~~m~~~ 109 (818)
+..+|..+- .| .|+|++++|.++.+... +.....+-..+..|+...+ -++...-|++..+.
T Consensus 111 ~~p~Wa~Iy-y~--LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIWALIY-YC--LRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHHHHHH-HH--HTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccHHHHH-HH--HhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 445665433 33 79999999999994332 3444556666777766422 12444455555543
No 345
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.45 E-value=14 Score=35.67 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCCC-HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCcchHHH
Q 003457 381 WKPD-VVMWGALLAACKNHG-----------NIEVAERVVKEIIALEPNNHGVYVV 424 (818)
Q Consensus 381 ~~pd-~~~~~~Li~a~~~~g-----------~~~~A~~~~~~~~~~~P~~~~~y~~ 424 (818)
+.|+ ..++..+..+|...+ .+++|.+.|+++.+.+|++. .|..
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~k 118 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRK 118 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHH
Confidence 4565 466666666665433 36777888888889999944 4443
No 346
>PF00629 MAM: MAM domain; InterPro: IPR000998 MAM is an acronym derived from meprin, A-5 protein, and receptor protein-tyrosine phosphatase mu. The MAM domain consists of approximately 170 amino acids. It occurs in several cell surface proteins, including Meprins, and is thought to function as an interaction or adhesion domain []. The domain has been shown to play a role in homodimerization of protein-tyrosine phosphatase mu [] and appears to help determine the specificity of these interactions. It has been reported that certain cysteine mutations in the MAM domain of murine meprin A result in the formation of monomeric meprin, which has altered stability and activity []. This indicates that these domain-domain interactions are critical for structure and function of the enzyme. It has also been shown that the MAM domain of meprins is necessary for correct folding and transport through the secretory pathway []. ; GO: 0016020 membrane; PDB: 2C9A_A 2V5Y_A.
Probab=77.41 E-value=13 Score=34.92 Aligned_cols=81 Identities=17% Similarity=0.056 Sum_probs=41.4
Q ss_pred CCCeEEEEEecCcccCccccceEEEEeeCCc--ceeeEE-Eecc--cCCceeeeEEEEeccceeeEEEEeCcccccCCCC
Q 003457 708 EGSAYNLDFTLGDAKDACEGMFVVRVQAGSL--VQNFTV-QSLG--TGSVIKHSVTFKAGSGSTPISFISYNINQTKDGV 782 (818)
Q Consensus 708 ~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~--~~~~~~~~~~f~a~~~~~~~~f~~~~~~~~~~~~ 782 (818)
....+-|+|..-- .-.....|+|.+... ....++ ...+ ...|....+.+.+.....+|+|....... ..
T Consensus 70 ~~~~~cl~F~y~~---~g~~~~~L~V~v~~~~~~~~~~l~~~~~~~~~~W~~~~v~l~~~~~~~~i~f~~~~~~~-~~-- 143 (160)
T PF00629_consen 70 ASGNSCLSFWYYM---YGSSVGTLRVYVREESTGNSTPLWSITGSQGNSWQRAQVNLPPISSPFQIIFEAIRGSS-YR-- 143 (160)
T ss_dssp -SS--EEEEEEEE---E-SSSEEEEEEEEETT----S-SEEE-----SSEEEEEEEE---TS-EEEEEEEEE--S-S---
T ss_pred ccccceeEEEEee---ccccceeeEEEEEecCCccceeeeeecCCCcCCccceEEEcccccccceEEEEEEEcCC-Cc--
Confidence 3446779999532 223335588877554 111112 2222 66799999999999999999998732110 01
Q ss_pred ccccccceeeeee
Q 003457 783 FCGPLIDDVVLRA 795 (818)
Q Consensus 783 ~~gp~~d~v~~~~ 795 (818)
-.=.||||.|.+
T Consensus 144 -~~iaiDdi~~~~ 155 (160)
T PF00629_consen 144 -GDIAIDDISLSP 155 (160)
T ss_dssp --EEEEEEEEEES
T ss_pred -eEEEEEEEEEeC
Confidence 122599999984
No 347
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.98 E-value=89 Score=31.72 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=15.2
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC
Q 003457 293 ASHGHAEEALDLFRKLEKEQIV 314 (818)
Q Consensus 293 ~~~g~~~~A~~l~~~m~~~g~~ 314 (818)
.+.+++.+|+++|++.....+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4557778888888877665444
No 348
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=76.93 E-value=2.1e+02 Score=35.90 Aligned_cols=241 Identities=9% Similarity=-0.028 Sum_probs=114.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 003457 170 RQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEM 249 (818)
Q Consensus 170 ~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~ 249 (818)
..+...+.++|...-..-+..+.+.+. +++...+.++++ .+|...-...+.++.+.+........+..+++. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 345555556666666666666655554 334444555543 234333334444444332211112233333322 4
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003457 250 GAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCH 329 (818)
Q Consensus 250 ~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 329 (818)
+..+....++++...+.- ....+...+..+|...-...+.++.+.+..+. +..+.. .++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence 555555555555543311 12234444555666555555555555544322 112221 3344444455555555
Q ss_pred cCCHHH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 330 AGFIDV-GRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVV 408 (818)
Q Consensus 330 ~g~~~~-A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~ 408 (818)
.+..+. +...+..+.+ .+|...-...+.++.+.|..+.+...+..+...+|...-...+.++...+. +++...+
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 554332 2333334332 355666666777777777655544444444334555555555666655554 3455555
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHh
Q 003457 409 KEIIALEPNNHGVYVVLSNMYAEA 432 (818)
Q Consensus 409 ~~~~~~~P~~~~~y~~L~~~l~~~ 432 (818)
..+++ +|+ ...-...+..|.+.
T Consensus 844 ~~~L~-D~~-~~VR~~A~~aL~~~ 865 (897)
T PRK13800 844 VEALT-DPH-LDVRKAAVLALTRW 865 (897)
T ss_pred HHHhc-CCC-HHHHHHHHHHHhcc
Confidence 55542 333 44444555555553
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.90 E-value=74 Score=33.31 Aligned_cols=59 Identities=14% Similarity=0.065 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 387 MWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 387 ~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
++......|...|.+.+|.++-++++.++|-+.+.+..|..+|...|+--+|.+-++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445567899999999999999999999999999999999999999977777744433
No 350
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.45 E-value=1.4e+02 Score=33.77 Aligned_cols=172 Identities=14% Similarity=0.144 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 003457 181 LNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHM 260 (818)
Q Consensus 181 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~ 260 (818)
-...-+++..+..+.++.-...+..+|++-| .+...|..++.+|... .-+.-..+++++.+..+. |+..-..|+..
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHH
Confidence 3345566677777777777777777777654 3566677777777666 456666777777766432 33333445555
Q ss_pred HHhCCCHHHHHHHHhhCCCC------Ch---hhHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHc
Q 003457 261 YTKNGALAKAKALFDSMPER------NI---ATWNAMISGLASHGHAEEALDLFRKLEK-EQIVPNDITFVGVLSACCHA 330 (818)
Q Consensus 261 ~~~~g~~~~A~~~f~~m~~~------d~---~~~~~Li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~~ 330 (818)
|-+ .+.+.+...|.++..+ +. ..|..|...- -.+.+..+.+..++.. .|..--...+.-+-.-|...
T Consensus 142 yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 544 6666666666655431 11 1333333211 2344444444444443 22222223333333445555
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003457 331 GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVD 361 (818)
Q Consensus 331 g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~ 361 (818)
.++++|++++..+.+. ...|......++.
T Consensus 219 eN~~eai~Ilk~il~~--d~k~~~ar~~~i~ 247 (711)
T COG1747 219 ENWTEAIRILKHILEH--DEKDVWARKEIIE 247 (711)
T ss_pred cCHHHHHHHHHHHhhh--cchhhhHHHHHHH
Confidence 5566666665555543 3344444444443
No 351
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.25 E-value=9.4 Score=39.96 Aligned_cols=57 Identities=16% Similarity=0.221 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHH
Q 003457 388 WGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLV 444 (818)
Q Consensus 388 ~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~ 444 (818)
+..++..+...|+++.+.+.+++.+..+|-+...|..+...|.+.|+...|++.++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 344444445555555555555555555555555555555555555555555554433
No 352
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=75.47 E-value=5.9 Score=41.14 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=24.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 397 NHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
+.|+.++|..+|+.++.+.|++++.+..++......++.-+|-+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq 171 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQ 171 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhh
Confidence 45555555555555555555555555555555544444444444
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=75.30 E-value=1.1e+02 Score=32.05 Aligned_cols=60 Identities=15% Similarity=0.046 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003457 184 WTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKM 244 (818)
Q Consensus 184 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~ 244 (818)
.+...+.|..+|.+.+|.++-++.+... +.+...+..++..+...|+--.+.+-++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455567778888888888888877764 66777777777888888876666665555543
No 354
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=75.20 E-value=70 Score=29.97 Aligned_cols=115 Identities=10% Similarity=0.097 Sum_probs=72.5
Q ss_pred cCCCCCCCCChhHHHHHHHHhcCchHHHHHHHHHHHhCCCCCh--HHHHHHHHHhhhhcCCCHHHHHHHHhhcCC-----
Q 003457 5 CSSLRQPPLPIPPLSLLADKCKSMHQLKQIHAQMIISSRIQDH--FAASRLLAFCALSSSGDLSYATRLFNSIQS----- 77 (818)
Q Consensus 5 ~~~~~~~~p~~~tl~~ll~~c~~~~~~~~~~~~~~~~g~~~d~--~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~----- 77 (818)
.+.++...++-.++...+. +....|.+.+..++. ...|.++.-. ..-+++....++++.+..
T Consensus 4 ~sk~g~~~~nL~~w~~fi~---------~~~~y~~~~~~~~~~k~~fiN~iL~hl--~~~~nf~~~v~~L~~l~~l~~~~ 72 (145)
T PF13762_consen 4 SSKLGNVLANLEVWKTFIN---------SHLPYMQEENASQSTKTIFINCILNHL--ASYQNFSGVVSILEHLHFLNTDN 72 (145)
T ss_pred cccCcchhhhHHHHHHHHH---------HHHHHhhhcccChhHHHHHHHHHHHHH--HHccchHHHHHHHHHHHHhhHHH
Confidence 4445555555555554444 333445555555543 4556666655 566777777777776642
Q ss_pred ----CCHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 003457 78 ----PNHFMWNTLIRAQASSLN-PDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRS 130 (818)
Q Consensus 78 ----p~~~~yn~Li~~~~~~g~-~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~ 130 (818)
.+-.+|+.++.+..+..- ---+..+|..|++.+.+++..-|..++.++.+...
T Consensus 73 ~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 73 IIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred HhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 345578888888766555 33567778888887788888888888888766533
No 355
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.48 E-value=8.1 Score=33.00 Aligned_cols=53 Identities=17% Similarity=0.105 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHHhhchH
Q 003457 384 DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN--HGVYVVLSNMYAEAESMK 436 (818)
Q Consensus 384 d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~--~~~y~~L~~~l~~~G~~~ 436 (818)
|...-..+...+...|++++|++.+-++++.+|+. ...-..|..++.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 44555556666666666666666666666655543 445555666666655533
No 356
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=74.38 E-value=4.8 Score=40.24 Aligned_cols=52 Identities=13% Similarity=0.175 Sum_probs=45.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 395 CKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
..+.++.+.|.+++.+++++.|+....|..++..-.++|+++.|.+.++.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999777763
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=73.97 E-value=7.1 Score=44.12 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=32.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 359 MVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 359 Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
|.+.+.+.|...+|-.++.+.. ......++..+.+++....+++.|++.|++++++.|+++++-+.|
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence 3344444444444544444331 112234444555555555555555555555555555555544444
No 358
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=73.48 E-value=1.3e+02 Score=31.76 Aligned_cols=61 Identities=11% Similarity=-0.094 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 370 LEAEELIKRMVWKPDVVMWGALLAACKN----HGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 370 ~~A~~~~~~m~~~pd~~~~~~Li~a~~~----~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
..|...|.++...-+......|...|.. ..+.++|...|+++-+.+. ......++ ++.+.|
T Consensus 172 ~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 172 KKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 3566666666333344444445544432 3367777777777777665 44555555 444444
No 359
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.32 E-value=33 Score=36.08 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=73.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC-CHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 003457 145 GLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR-TLN-----VWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVT 218 (818)
Q Consensus 145 g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~-d~~-----~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 218 (818)
|......+...++..-....+++.++..+-+++.. +.. +-.+.++.+ -.-++++++.++..=++-|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 33334445555666656678888888888887652 110 112233333 33577799999888889999999999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 003457 219 LASVLSACAQSGCLELGEKVHVFVKMRG 246 (818)
Q Consensus 219 ~~~ll~~~~~~g~~~~A~~i~~~~~~~g 246 (818)
+..+|..+.+.+++.+|.++.-.|+.+.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888764
No 360
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.25 E-value=99 Score=32.48 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=66.7
Q ss_pred ChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc-cC-ChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCChHHHH
Q 003457 95 NPDKAIFLYMNMRR-TGFAPNQHTFTFVLKACSN-VR-SLNCCKQIHTHVSKS-GLDLDLHVVNCLVRCYSVSSDLNNAR 170 (818)
Q Consensus 95 ~~~~Al~lf~~m~~-~g~~pd~~ty~~ll~~~~~-~g-~~~~A~~~~~~m~~~-g~~p~~~~~~~Li~~y~~~g~~~~A~ 170 (818)
...+|+.+|+.... ..+--|......+++.... .+ ....--++.+.+... +-.++..+....++.+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35566677663221 2244477777777776655 21 223333344444332 34556667777788888888888888
Q ss_pred HHHHHhhc-----CCHHHHHHHHHHHHHcCChHHHHHHH
Q 003457 171 QVFDEIRN-----RTLNVWTTMISGYAQSFRANEALMLF 204 (818)
Q Consensus 171 ~l~~~m~~-----~d~~~~~~Li~~~~~~g~~~~A~~l~ 204 (818)
++++.... .|...|..+|..-.+.|+..-...+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 88777653 36667888888888888865444433
No 361
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.11 E-value=1.1e+02 Score=34.38 Aligned_cols=50 Identities=18% Similarity=-0.020 Sum_probs=26.7
Q ss_pred HHHhCCCHHHHHHHHhhCCC---C---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 260 MYTKNGALAKAKALFDSMPE---R---------NIATWNAMISGLASHGHAEEALDLFRKLE 309 (818)
Q Consensus 260 ~~~~~g~~~~A~~~f~~m~~---~---------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 309 (818)
.+.-.|++.+|.+++...-- + .-..||.|...+.+.+.+..+..+|.+..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL 310 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKAL 310 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHH
Confidence 34455666666666654321 1 11234556555666666666666665554
No 362
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.06 E-value=34 Score=39.15 Aligned_cols=97 Identities=18% Similarity=0.158 Sum_probs=43.4
Q ss_pred cCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 003457 61 SSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTH 140 (818)
Q Consensus 61 k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~ 140 (818)
+.|+++.|.++..+. .+..-|..|.++..+.+++..|.++|.+.+. |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 444444444444322 3444455555555555555555555554432 23344444444444444444344
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 003457 141 VSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFD 174 (818)
Q Consensus 141 m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~ 174 (818)
..+.|.. |...-+|...|+++++.+++.
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 4333321 112223444555555555443
No 363
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.90 E-value=20 Score=35.48 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=51.9
Q ss_pred HHcCCHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHHhhchH
Q 003457 364 GRCGKVLEAEELIKRMVWKP---DVVMWGALLAACKNHGNIEVAERVVKEIIALEPN----NHGVYVVLSNMYAEAESMK 436 (818)
Q Consensus 364 ~~~g~~~~A~~~~~~m~~~p---d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~----~~~~y~~L~~~l~~~G~~~ 436 (818)
.+.|+ ++|.+.|-.+...| ++.....|.. |....+.+++++++-+++++.+. +++.+..|+.++.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 44455 56777776664232 4455555554 44577899999999888885432 4788999999999999999
Q ss_pred HHH
Q 003457 437 MQL 439 (818)
Q Consensus 437 eA~ 439 (818)
+|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 885
No 364
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.78 E-value=31 Score=38.28 Aligned_cols=123 Identities=15% Similarity=0.134 Sum_probs=84.8
Q ss_pred HHHcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003457 292 LASHGHAEEALDLFRKL-EKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVL 370 (818)
Q Consensus 292 ~~~~g~~~~A~~l~~~m-~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~ 370 (818)
-...|+...|-+-+... +...-.|+..-+.. ......|+++.+.+.+....+. +-....+...+++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHH
Confidence 34457777666544444 44433455444333 4467789999999998887654 4556677888899999999999
Q ss_pred HHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 371 EAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 371 ~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
+|...-+.|. .-.+..............|-++++...+++.+.++|..
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 9999888773 11234444444444567788999999999999988763
No 365
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=71.06 E-value=4.8 Score=37.51 Aligned_cols=47 Identities=13% Similarity=0.044 Sum_probs=19.3
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 003457 193 QSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVH 239 (818)
Q Consensus 193 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~ 239 (818)
+.+.++....+++.+...+...+....+.++..|++.++.++...++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 19 ERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp TTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred hCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 33444444444444444332333444444444444444434443333
No 366
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=70.98 E-value=63 Score=35.99 Aligned_cols=117 Identities=11% Similarity=0.003 Sum_probs=84.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHH
Q 003457 327 CCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVA 404 (818)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A 404 (818)
-...|++..|-+-+....+.+.-.|+.....+. .+...|+++.+.+.+.... +.....+...++......|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 345678777776666666654445555444444 4778999999999887762 334567788889888999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 405 ERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 405 ~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
....+-|+.-.-++++.....+-.-...|-+|+++-..+..
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~ 417 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRV 417 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHH
Confidence 99999998866666666665555556677888888877666
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=70.77 E-value=5.8 Score=24.93 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=17.2
Q ss_pred chHHHHHHHHHHhhchHHHHHHHH
Q 003457 420 GVYVVLSNMYAEAESMKMQLEILL 443 (818)
Q Consensus 420 ~~y~~L~~~l~~~G~~~eA~~l~~ 443 (818)
.....++.++...|++++|.++++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355677788888888888877543
No 368
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.63 E-value=43 Score=35.29 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=71.2
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-C------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003457 246 GFEMGAILGTALVHMYTKNGALAKAKALFDSMPE-R------NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDI 318 (818)
Q Consensus 246 g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-~------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 318 (818)
|.+....+...++..-....+.+.++..+-++.. + +...+ +.+. ++-.=++++++.++..=+..|+-||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 3344444555566666667788888888877764 2 21111 1222 233456778999998888999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003457 319 TFVGVLSACCHAGFIDVGRQIFGSMKRV 346 (818)
Q Consensus 319 t~~~ll~a~~~~g~~~~A~~~~~~m~~~ 346 (818)
+++.+|..+.+.+++.+|.++...|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999888877665
No 369
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.58 E-value=9.4 Score=23.75 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=22.6
Q ss_pred chHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 420 GVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 420 ~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
..+..++.++...|++++|...++..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46889999999999999999977655
No 370
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=70.37 E-value=1.4e+02 Score=31.07 Aligned_cols=106 Identities=11% Similarity=-0.079 Sum_probs=53.0
Q ss_pred cCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHccCChH-HHH
Q 003457 61 SSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLY----MNMRRTGFAPNQHTFTFVLKACSNVRSLN-CCK 135 (818)
Q Consensus 61 k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf----~~m~~~g~~pd~~ty~~ll~~~~~~g~~~-~A~ 135 (818)
+++++++|.+++..- ...+.+.++...|-++- +-..+.+.+.|......++..+.....-+ .-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456777777776533 33445556655444443 33333456666666566666555443211 223
Q ss_pred HHHHHHHH---cC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh
Q 003457 136 QIHTHVSK---SG--LDLDLHVVNCLVRCYSVSSDLNNARQVFDEIR 177 (818)
Q Consensus 136 ~~~~~m~~---~g--~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~ 177 (818)
++.+.+++ .+ ..-+......+...|.+.+++.+|+..|-.-.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~ 117 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT 117 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 33333332 22 12256677788888888888888887764443
No 371
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=69.89 E-value=1.3e+02 Score=35.54 Aligned_cols=199 Identities=15% Similarity=0.194 Sum_probs=105.5
Q ss_pred HHHHHHhhcC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHhcCCh
Q 003457 170 RQVFDEIRNR-------TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSV----------TLASVLSACAQSGCL 232 (818)
Q Consensus 170 ~~l~~~m~~~-------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----------t~~~ll~~~~~~g~~ 232 (818)
...+++|..+ ...+-..|+..|....+++..+++.+.+.+. ||.. .|...++---+.|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 3445555543 2335566677777788888888888887653 3322 122223222344566
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003457 233 ELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQ 312 (818)
Q Consensus 233 ~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 312 (818)
++|..+.-.+++..-+..+ ++||-+|+. |+.|- +.+.|...+..+.|.+.|++.-+.
T Consensus 260 akAL~~~l~lve~eg~vap-------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFev- 316 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAP-------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFEV- 316 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCC-------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhcc-
Confidence 6666665555544212211 234444432 22221 122344455667788888877653
Q ss_pred CCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHH
Q 003457 313 IVPNDITFVGVLSACCHAGF-IDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGAL 391 (818)
Q Consensus 313 ~~pd~~t~~~ll~a~~~~g~-~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~L 391 (818)
.|+..+=..+...+...|. ++...++ +. .-..|-..+++.|..++..++++-. + .
T Consensus 317 -eP~~~sGIN~atLL~aaG~~Fens~El-q~------------IgmkLn~LlgrKG~leklq~YWdV~-------~---y 372 (1226)
T KOG4279|consen 317 -EPLEYSGINLATLLRAAGEHFENSLEL-QQ------------IGMKLNSLLGRKGALEKLQEYWDVA-------T---Y 372 (1226)
T ss_pred -CchhhccccHHHHHHHhhhhccchHHH-HH------------HHHHHHHHhhccchHHHHHHHHhHH-------H---h
Confidence 5554432222222222222 2222221 11 1112334467888888877777543 2 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 392 LAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 392 i~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
+.+-.-..++.+|++..+.|.+++|..
T Consensus 373 ~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 373 FEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hhhhhhccCHHHHHHHHHHHhccCCce
Confidence 333455778999999999999999873
No 372
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=69.82 E-value=10 Score=26.33 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 283 ATWNAMISGLASHGHAEEALDLFRKLE 309 (818)
Q Consensus 283 ~~~~~Li~~~~~~g~~~~A~~l~~~m~ 309 (818)
.+++.|...|...|++++|+.++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345666666666666666666666654
No 373
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.80 E-value=12 Score=34.23 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHcC--CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 350 EPKIEHYGCMVDLLGRCGKV---LEAEELIKRMV--WKP--DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 350 ~p~~~~~~~Li~~~~~~g~~---~~A~~~~~~m~--~~p--d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
.++..+--.+..++.+..+. .+-+.+|++.- ..| .......|.-++.+.|++++++++.+..++..|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 45556666666667665543 34455666552 223 2334444555677777777777777777777777544
No 374
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=69.39 E-value=30 Score=36.79 Aligned_cols=87 Identities=17% Similarity=0.130 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcC----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003457 355 HYGCMVDLLGRCGKVLEAEELIKRMV----WKP--DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNM 428 (818)
Q Consensus 355 ~~~~Li~~~~~~g~~~~A~~~~~~m~----~~p--d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~ 428 (818)
.|.-=.+-|.+.+++..|...|.+.. ..| +.+.|++-..+-...|++..++.-..+++.++|.+..+|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34444556888899999999987762 224 367787777777889999999999999999999999999999999
Q ss_pred HHHhhchHHHHHH
Q 003457 429 YAEAESMKMQLEI 441 (818)
Q Consensus 429 l~~~G~~~eA~~l 441 (818)
+....++++|...
T Consensus 163 ~~eLe~~~~a~nw 175 (390)
T KOG0551|consen 163 LLELERFAEAVNW 175 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998777763
No 375
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=69.28 E-value=2.5e+02 Score=33.42 Aligned_cols=359 Identities=10% Similarity=0.028 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhC------CCh
Q 003457 95 NPDKAIFLYMNMRRTGFAPNQHTF-TFVLKACSNVRSLNCCKQIHTHVS-KSGLDLDLHVVNCLVRCYSVS------SDL 166 (818)
Q Consensus 95 ~~~~Al~lf~~m~~~g~~pd~~ty-~~ll~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~Li~~y~~~------g~~ 166 (818)
...+.+...+.|.+..-.|+..+- ..+-+.|.-.|++++|.++--..- ...+.++...+.+++.-|... ..+
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~ 117 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETY 117 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHh
Q ss_pred H----------HHHHHHHHhhcC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 003457 167 N----------NARQVFDEIRNR--TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLEL 234 (818)
Q Consensus 167 ~----------~A~~l~~~m~~~--d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~ 234 (818)
+ +-+.++++|..+ +-.-|...+.......+++.-.+. .|......-+......++..... +.+-
T Consensus 118 ~~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~A--il~~d~~~~~~~yll~l~~s~v~--~~ef 193 (929)
T KOG2062|consen 118 KNPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEA--ILKSDSVIGNLTYLLELLISLVN--NREF 193 (929)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHH--hccccccchHHHHHHHHHHHHHh--hHHH
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 003457 235 GEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEK---- 310 (818)
Q Consensus 235 A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~---- 310 (818)
-.++++.+.+.-.+....-|..+.++|.-..+.+.+.++++++.+.|......-|.-.....-..+-+....+-..
T Consensus 194 R~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~ 273 (929)
T KOG2062|consen 194 RNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDA 273 (929)
T ss_pred HHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccccc
Q ss_pred ---------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHcCCHHHHH--HHHHH
Q 003457 311 ---------EQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGC-MVDLLGRCGKVLEAE--ELIKR 378 (818)
Q Consensus 311 ---------~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~-Li~~~~~~g~~~~A~--~~~~~ 378 (818)
.++-....+....+.-+.+.++.+ ..+++..++. +.-.+..+.. +.+++...|-..+-+ .-++-
T Consensus 274 ~de~p~~kii~ILSGe~tik~~l~FL~~~N~tD--~~iL~~iK~s--~r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~W 349 (929)
T KOG2062|consen 274 RDEKPMEKIISILSGEETIKLYLQFLLRHNNTD--LLILEEIKES--VRNSVCHTATLIANAFMHAGTTSDTFLRNNLDW 349 (929)
T ss_pred cccChHHHHHHHhcCchHHHHHHHHHHHcCCch--HHHHHHHHHH--HHHhhhhHHHHHHHHHHhcCCcchHHHHhchhH
Q ss_pred cCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhc----CCCCcchHHHHHHHHHHhhchHHHHHHHHHHH-------
Q 003457 379 MVWKPDVVMWGALLA-ACKNHGNIEVAERVVKEIIAL----EPNNHGVYVVLSNMYAEAESMKMQLEILLVQV------- 446 (818)
Q Consensus 379 m~~~pd~~~~~~Li~-a~~~~g~~~~A~~~~~~~~~~----~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~------- 446 (818)
.....|-.-|+.... +..+.|+..+|.++++-.+-. .....+--..++..+..+|--++..+++..++
T Consensus 350 lskAtNWaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~ 429 (929)
T KOG2062|consen 350 LSKATNWAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEV 429 (929)
T ss_pred HhhcchHhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchh
Q ss_pred HHHHHHhhhhcccCC
Q 003457 447 LFAGLASAADILQNP 461 (818)
Q Consensus 447 ~ll~~~~~~~~~~~~ 461 (818)
...++|.+-++...|
T Consensus 430 v~hG~cLGlGLa~mG 444 (929)
T KOG2062|consen 430 VRHGACLGLGLAGMG 444 (929)
T ss_pred hhhhhhhhccchhcc
No 376
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=68.87 E-value=1e+02 Score=28.95 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=9.6
Q ss_pred HHhCCCHHHHHHHHhhCCC
Q 003457 261 YTKNGALAKAKALFDSMPE 279 (818)
Q Consensus 261 ~~~~g~~~~A~~~f~~m~~ 279 (818)
+.+.|++++|.++|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 4444555555555555544
No 377
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=68.41 E-value=2.1 Score=39.95 Aligned_cols=84 Identities=23% Similarity=0.178 Sum_probs=58.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHH
Q 003457 222 VLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEA 301 (818)
Q Consensus 222 ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A 301 (818)
++..+.+.+..+...++++.+.+.+...+....+.++..|++.++.++..++++.... .-...++..|.+.+.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666778888888999998877667788889999999998877777777774333 2334456666677777777
Q ss_pred HHHHHHH
Q 003457 302 LDLFRKL 308 (818)
Q Consensus 302 ~~l~~~m 308 (818)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6666654
No 378
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.19 E-value=36 Score=33.67 Aligned_cols=69 Identities=10% Similarity=0.036 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc-------CCHHHHHHHHHHHHHcCChHHHH
Q 003457 132 NCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRN-------RTLNVWTTMISGYAQSFRANEAL 201 (818)
Q Consensus 132 ~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~-------~d~~~~~~Li~~~~~~g~~~~A~ 201 (818)
+.|++.|-.+...+.--++.....|...|. ..|.+++.+++.+..+ .|+..+..|++.|.+.++++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 555555555555554445566666665555 4566666666665542 25666777777777777776663
No 379
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=67.79 E-value=42 Score=28.98 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003457 297 HAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMV 360 (818)
Q Consensus 297 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li 360 (818)
+.-++.+-++.+....+.|++......+++|.+.+++..|.++++.++.+ ...+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHH
Confidence 34456667777777778889989999999999999999999999987765 333444565555
No 380
>PRK13342 recombination factor protein RarA; Reviewed
Probab=67.60 E-value=1.6e+02 Score=33.08 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=29.6
Q ss_pred HHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003457 183 VWTTMISGYAQ---SFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQS 229 (818)
Q Consensus 183 ~~~~Li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 229 (818)
.+..+++++.+ ..+.+.|+.++.+|++.|..|....-..+..++...
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 34455555554 378888888888888888766655444444444333
No 381
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=67.39 E-value=2.2e+02 Score=32.13 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=26.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 392 LAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 392 i~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
.-.|.+.|+.-.|.+.|.++....-.+|..|..|+.++.
T Consensus 342 G~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 342 GLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred hHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 335667777777777777777666556667777776665
No 382
>cd06263 MAM Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members include: type IIB receptor protein tyrosine phosphatases (such as RPTPmu), meprins (plasma membrane metalloproteases), neuropilins (receptors of secreted semaphorins), and zonadhesins (sperm-specific membrane proteins which bind to the extracellular matrix of the egg). In meprin A and neuropilin-1 and -2, MAM is involved in homo-oligomerization. In RPTPmu, it has been associated with both homophilic adhesive (trans) interactions and lateral (cis) receptor oligomerization. In a GPI-anchored protein that is expressed in cells in the embryonic chicken spinal chord, MDGA1, the MAM domain has been linked to heterophilic interactions with axon-rich region.
Probab=67.02 E-value=18 Score=34.20 Aligned_cols=79 Identities=18% Similarity=0.103 Sum_probs=50.6
Q ss_pred CeEEEEEecCcccCccccceEEEEeeCCcce--eeEE-Eecc--cCCceeeeEEEEeccceeeEEEEeCcccccCCCCcc
Q 003457 710 SAYNLDFTLGDAKDACEGMFVVRVQAGSLVQ--NFTV-QSLG--TGSVIKHSVTFKAGSGSTPISFISYNINQTKDGVFC 784 (818)
Q Consensus 710 ~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~--~~~~~~~~~~f~a~~~~~~~~f~~~~~~~~~~~~~~ 784 (818)
...-|+|.. -........|+|.+..... ..++ +..+ ...|....+.+.+.....+|+|....... .. .
T Consensus 71 ~~~Cl~F~y---~~~g~~~g~L~V~v~~~~~~~~~~lw~~~~~~~~~W~~~~v~l~~~~~~fqi~fe~~~~~~-~~---g 143 (157)
T cd06263 71 SSHCLSFWY---HMYGSGVGTLNVYVREEGGGLGTLLWSASGGQGNQWQEAEVTLSASSKPFQVVFEGVRGSG-SR---G 143 (157)
T ss_pred CCeEEEEEE---EecCCCCCeEEEEEEeCCCCcceEEEEEECCCCCeeEEEEEEECCCCCceEEEEEEEECCC-cc---c
Confidence 456699984 2222335678888755443 3333 3333 46699999999999899999999832211 11 2
Q ss_pred ccccceeeeee
Q 003457 785 GPLIDDVVLRA 795 (818)
Q Consensus 785 gp~~d~v~~~~ 795 (818)
.=.||||+|.+
T Consensus 144 ~IAIDdI~l~~ 154 (157)
T cd06263 144 DIALDDISLSP 154 (157)
T ss_pred cEEEeEEEEec
Confidence 33699999974
No 383
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=66.01 E-value=62 Score=32.43 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHH
Q 003457 285 WNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMV 360 (818)
Q Consensus 285 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li 360 (818)
.+..++.+.+.+...+|+...++-++..+. |..+-..++..++-.|++++|...++-..+ +.|+ ...|..++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 445567778888889999888887776322 555666777888889999999887776553 3443 45565555
Q ss_pred HH
Q 003457 361 DL 362 (818)
Q Consensus 361 ~~ 362 (818)
++
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 43
No 384
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=65.36 E-value=20 Score=40.74 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=67.3
Q ss_pred HHcCCHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 364 GRCGKVLEAEELIKRM-VWKPD--VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 364 ~~~g~~~~A~~~~~~m-~~~pd--~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
...|+...|.+.+..+ ..+|- .+....|.+...+.|....|-.++.+.+.+.-..+-++..+++++....+.+.|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 3489999999999887 34442 34556677778888899999999999999987788899999999999999999999
Q ss_pred HHHHH
Q 003457 441 ILLVQ 445 (818)
Q Consensus 441 l~~~~ 445 (818)
.++..
T Consensus 698 ~~~~a 702 (886)
T KOG4507|consen 698 AFRQA 702 (886)
T ss_pred HHHHH
Confidence 55544
No 385
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.68 E-value=2.6e+02 Score=31.61 Aligned_cols=148 Identities=9% Similarity=0.058 Sum_probs=94.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCC--HH------HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHH--HHHHH
Q 003457 292 LASHGHAEEALDLFRKLEKEQ-IVPN--DI------TFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEH--YGCMV 360 (818)
Q Consensus 292 ~~~~g~~~~A~~l~~~m~~~g-~~pd--~~------t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~--~~~Li 360 (818)
-.-.|++.+|++-..+|.+-- -.|. .. ....+...|+.-+.++.|+..|....+. --.-|... -..+.
T Consensus 333 ~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~-t~~~dl~a~~nlnlA 411 (629)
T KOG2300|consen 333 RLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL-TESIDLQAFCNLNLA 411 (629)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh-hhHHHHHHHHHHhHH
Confidence 345699999999999987621 1233 11 1222334566778899999988887665 22333333 34566
Q ss_pred HHHHHcCCHHHHHHHHHHcCCCCCHHHH------HH--HHHH--HHHcCCHHHHHHHHHHHHhcCCC-C-----cchHHH
Q 003457 361 DLLGRCGKVLEAEELIKRMVWKPDVVMW------GA--LLAA--CKNHGNIEVAERVVKEIIALEPN-N-----HGVYVV 424 (818)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~m~~~pd~~~~------~~--Li~a--~~~~g~~~~A~~~~~~~~~~~P~-~-----~~~y~~ 424 (818)
-.|.+.|+.+.-.++++.+. .++..++ +. ++.+ ..+.+++.||...+++.+++.-- + .-.+..
T Consensus 412 i~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvL 490 (629)
T KOG2300|consen 412 ISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVL 490 (629)
T ss_pred HHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 77999999998888888884 1111111 11 1222 24788999999999999886511 1 223345
Q ss_pred HHHHHHHhhchHHHHHH
Q 003457 425 LSNMYAEAESMKMQLEI 441 (818)
Q Consensus 425 L~~~l~~~G~~~eA~~l 441 (818)
|+.++...|+..|+.+.
T Consensus 491 Ls~v~lslgn~~es~nm 507 (629)
T KOG2300|consen 491 LSHVFLSLGNTVESRNM 507 (629)
T ss_pred HHHHHHHhcchHHHHhc
Confidence 67777788888888883
No 386
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=63.49 E-value=2.6e+02 Score=31.67 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=24.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHhC
Q 003457 288 MISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACC--HAGFIDVGRQIFGSMKRVYG 348 (818)
Q Consensus 288 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~--~~g~~~~A~~~~~~m~~~~g 348 (818)
.+.-+.+.+-.++|...+..+... ++|....|..++..-. ..-++..+..+|+.+...+|
T Consensus 466 ~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 466 YLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 334444445555555555555443 2233333333332111 11124444455555554444
No 387
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.87 E-value=3.7e+02 Score=33.14 Aligned_cols=314 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhCCChHHHHHHHHHhhc---------------
Q 003457 118 FTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRC----YSVSSDLNNARQVFDEIRN--------------- 178 (818)
Q Consensus 118 y~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~----y~~~g~~~~A~~l~~~m~~--------------- 178 (818)
+..-+..+.+..++++|..+-+.....+.+....+...-+.- +...+++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~~~vi~lfP~l~p~ 389 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDPRHVISLFPDLLPS 389 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccChHHHHHhchhhcCC
Q ss_pred -----------CCHHHHH----------HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003457 179 -----------RTLNVWT----------TMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEK 237 (818)
Q Consensus 179 -----------~d~~~~~----------~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~ 237 (818)
++..... .++.-+....+...+..-...|... ..--+...........-+.+..
T Consensus 390 ~~~~~~~~~~vp~~~~~~~~~~~v~a~l~~~~ylt~~r~~~~~~l~~~~m~~~-----~~~~~~~~s~~~~~~~~~~~~~ 464 (877)
T KOG2063|consen 390 ENSSIEFTGVVPIRAPELRGGDLVPAVLALIVYLTQSRREENKKLNKYKMLYM-----NYFKNTLISELLKSDLNDILEL 464 (877)
T ss_pred cccccceeeeccCchhhhccCcccchhhhhhhHhHHHHHHHHHHHHHhhhhHH-----hhhhccCcchhhccchHHHHHH
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCC
Q 003457 238 VHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEK---EQIV 314 (818)
Q Consensus 238 i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~---~g~~ 314 (818)
+=..+.+.-...++..-..++..=...-..++...++.+..+ |..|+..|...|+.++|+++|++..+ ..-.
T Consensus 465 IDttLlk~Yl~~n~~~v~~llrlen~~c~vee~e~~L~k~~~-----y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~ 539 (877)
T KOG2063|consen 465 IDTTLLKCYLETNPGLVGPLLRLENNHCDVEEIETVLKKSKK-----YRELIELYATKGMHEKALQLLRDLVDEDSDTDS 539 (877)
T ss_pred HHHHHHHHHHhcCchhhhhhhhccCCCcchHHHHHHHHhccc-----HHHHHHHHHhccchHHHHHHHHHHhcccccccc
Q ss_pred CCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHhCCCCCHHHHHH------------HHHHHHHcCCHHHHHHHHHHc-
Q 003457 315 PNDITFVGVLSACCHAGFI--DVGRQIFGSMKRVYGIEPKIEHYGC------------MVDLLGRCGKVLEAEELIKRM- 379 (818)
Q Consensus 315 pd~~t~~~ll~a~~~~g~~--~~A~~~~~~m~~~~g~~p~~~~~~~------------Li~~~~~~g~~~~A~~~~~~m- 379 (818)
--...+-.++..+.+.+.. +-..++-+..... ...--...+.. .+-.|......+-+..+++.+
T Consensus 540 ~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li 618 (877)
T KOG2063|consen 540 FQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLI 618 (877)
T ss_pred chhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-CchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHh
Q ss_pred --CCCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhcCCC-------CcchHHHHHHHHHHhh
Q 003457 380 --VWKPDVVMWGALLAACKNHGN-----------------IEVAERVVKEIIALEPN-------NHGVYVVLSNMYAEAE 433 (818)
Q Consensus 380 --~~~pd~~~~~~Li~a~~~~g~-----------------~~~A~~~~~~~~~~~P~-------~~~~y~~L~~~l~~~G 433 (818)
...++....+.++..|.+.=+ .+.....++.--...|+ ....|...+.++.|.|
T Consensus 619 ~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~ 698 (877)
T KOG2063|consen 619 SDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLG 698 (877)
T ss_pred HhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhh
Q ss_pred chHHHHHHH
Q 003457 434 SMKMQLEIL 442 (818)
Q Consensus 434 ~~~eA~~l~ 442 (818)
+.++|+.++
T Consensus 699 khe~aL~Iy 707 (877)
T KOG2063|consen 699 KHEEALHIY 707 (877)
T ss_pred hHHHHHHHH
No 388
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.79 E-value=12 Score=24.11 Aligned_cols=31 Identities=16% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003457 399 GNIEVAERVVKEIIALEPNNHGVYVVLSNMY 429 (818)
Q Consensus 399 g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l 429 (818)
|+.+.+..+|++++...|.++..|..++...
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 5678899999999999998888888776543
No 389
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.78 E-value=5.2 Score=44.33 Aligned_cols=54 Identities=19% Similarity=0.123 Sum_probs=47.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH-HHHHH
Q 003457 392 LAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE-ILLVQ 445 (818)
Q Consensus 392 i~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~-l~~~~ 445 (818)
+..+...+.++.|+.++.++++++|+.+..|..-+.++.+.+++..|+. ..+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh
Confidence 3445677889999999999999999999999888899999999999998 66666
No 390
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=62.78 E-value=41 Score=29.35 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=44.2
Q ss_pred HHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003457 290 SGLASHGHAE--EALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVD 361 (818)
Q Consensus 290 ~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~ 361 (818)
..|....+.+ +..+-++.+....+.|++......+.+|.+.+++..|.++++.++.+.+.. ...|..+++
T Consensus 16 ~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 16 EKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3444433333 456666666677788899999999999999999999999999988773333 336666553
No 391
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=61.59 E-value=9.7 Score=28.90 Aligned_cols=27 Identities=4% Similarity=-0.202 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 420 GVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 420 ~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
+.+..++..+.+.|++++|.+..+.++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL 28 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALL 28 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 356778889999999999999877774
No 392
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.43 E-value=2.1e+02 Score=29.91 Aligned_cols=192 Identities=11% Similarity=0.033 Sum_probs=105.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHccCChHHHHHHHHHHH----HcCCCCCHHHHHH
Q 003457 87 IRAQASSLNPDKAIFLYMNMRRTGFAPNQH-------TFTFVLKACSNVRSLNCCKQIHTHVS----KSGLDLDLHVVNC 155 (818)
Q Consensus 87 i~~~~~~g~~~~Al~lf~~m~~~g~~pd~~-------ty~~ll~~~~~~g~~~~A~~~~~~m~----~~g~~p~~~~~~~ 155 (818)
.+-.++.+++++|+..|.+....|+.-|.. +...+...|.+.|+.....+...... +..-+....+..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 344566777888888888887777655443 44556667777777665544433322 2111123345556
Q ss_pred HHHHHHh-CCChHHHHHHHHHhhcC----CH-----HHHHHHHHHHHHcCChHHHHHHHHHH----HHcCCCCCHHHHHH
Q 003457 156 LVRCYSV-SSDLNNARQVFDEIRNR----TL-----NVWTTMISGYAQSFRANEALMLFDQM----LMEGFEPNSVTLAS 221 (818)
Q Consensus 156 Li~~y~~-~g~~~~A~~l~~~m~~~----d~-----~~~~~Li~~~~~~g~~~~A~~l~~~m----~~~g~~pd~~t~~~ 221 (818)
|+..+-. ...++.-.++.....+. +. ..-..++..+.+.|.+.+|+.+...+ .+..-+|+..+...
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 6665543 33455555555544331 11 12345788899999999999876544 44444565554433
Q ss_pred HH-HHHHhcCChhHHHHHHHHHHHc----CCCCcHHHHHHHHHH--HHhCCCHHHHHHHHhhCC
Q 003457 222 VL-SACAQSGCLELGEKVHVFVKMR----GFEMGAILGTALVHM--YTKNGALAKAKALFDSMP 278 (818)
Q Consensus 222 ll-~~~~~~g~~~~A~~i~~~~~~~----g~~~~~~~~~~Li~~--~~~~g~~~~A~~~f~~m~ 278 (818)
+- .+|...++..++..-+..+... -+||....---|+.. +|...++..|...|-+..
T Consensus 170 lESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~ 233 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEAL 233 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHH
Confidence 32 4555666666666655544432 133333333333332 344556666766665444
No 393
>PRK12798 chemotaxis protein; Reviewed
Probab=60.89 E-value=2.7e+02 Score=30.92 Aligned_cols=176 Identities=17% Similarity=0.220 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHhhCCC----CChhhHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHH
Q 003457 264 NGALAKAKALFDSMPE----RNIATWNAMISG-LASHGHAEEALDLFRKLEKEQIVPN----DITFVGVLSACCHAGFID 334 (818)
Q Consensus 264 ~g~~~~A~~~f~~m~~----~d~~~~~~Li~~-~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~ 334 (818)
.|+..+|.+.+..+.. +....|-.|+.+ .....+..+|+++|++.+-. .|. ......-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5777777777777764 234456666554 34457788888888887653 333 233444455677889999
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHH-HHHHHHHcC---CHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 335 VGRQIFGSMKRVYGIEPKIEHYGC-MVDLLGRCG---KVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKE 410 (818)
Q Consensus 335 ~A~~~~~~m~~~~g~~p~~~~~~~-Li~~~~~~g---~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~ 410 (818)
++..+-.+..++|...|-..-|.. +...+.+.+ +.+.-..++..|...--...|..+...-.-.|+.+-|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988888877777555554433332 333333332 3445556666664222356888888888899999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHH-----HhhchHHHHHHH
Q 003457 411 IIALEPNNHGVYVVLSNMYA-----EAESMKMQLEIL 442 (818)
Q Consensus 411 ~~~~~P~~~~~y~~L~~~l~-----~~G~~~eA~~l~ 442 (818)
+..+... ...-...+.+|. -..+.++|.+.+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L 318 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEEL 318 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHH
Confidence 9887633 323333333333 234566666644
No 394
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.31 E-value=23 Score=29.27 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=35.4
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHHhhchHHHHH
Q 003457 397 NHGNIEVAERVVKEIIALEPNNHG---VYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~P~~~~---~y~~L~~~l~~~G~~~eA~~ 440 (818)
+..+.++|+..++++++..++.+. ++.+|+.+|...|+++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999987766544 45567788889999999888
No 395
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.07 E-value=2.2e+02 Score=29.64 Aligned_cols=83 Identities=13% Similarity=0.120 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 249 MGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACC 328 (818)
Q Consensus 249 ~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 328 (818)
-++..+..+...|.+.+++.+|+..|-.-.+++...+..++......+...++ |...-.. +--|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~Ra-VL~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARA-VLQYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHH-HHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHH-HHHHH
Confidence 35678888899999999999888877555444443332233333333333322 1111122 22355
Q ss_pred HcCCHHHHHHHHHHHHHH
Q 003457 329 HAGFIDVGRQIFGSMKRV 346 (818)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~ 346 (818)
..++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567788888777666544
No 396
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.82 E-value=2.8e+02 Score=30.66 Aligned_cols=124 Identities=11% Similarity=0.002 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHH
Q 003457 295 HGHAEEALDLFRKLEKEQIVPNDITFVG--------VLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDL 362 (818)
Q Consensus 295 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~--------ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~ 362 (818)
++++++|.++-+.....-..-|..++.. +-.+|...++...-...+....+...+..| ....|.|++.
T Consensus 139 ~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~ 218 (493)
T KOG2581|consen 139 QKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRN 218 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHH
Confidence 3556666655555433211223333322 223444556655555555544433233333 3455677777
Q ss_pred HHHcCCHHHHHHHHHHcCCC----CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 363 LGRCGKVLEAEELIKRMVWK----PD--VVMWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 363 ~~~~g~~~~A~~~~~~m~~~----pd--~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
|...+.++.|.++..+.... .+ ...+..+.....-++++..|.+.|-+++...|++
T Consensus 219 yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 219 YLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 78888888888888777411 11 1122223334456778888888888888888863
No 397
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.89 E-value=1.4e+02 Score=34.34 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=32.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-CcchHHHHHHHHH-HhhchHHHHHHHHHH
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPN-NHGVYVVLSNMYA-EAESMKMQLEILLVQ 445 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~-~~~~y~~L~~~l~-~~G~~~eA~~l~~~~ 445 (818)
.+.+.|=+.-|.++.+-+++++|. +|-+...+++.|+ ++.+|+=-+++++.+
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345666677777777777777776 6666666666665 555555555554444
No 398
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=57.93 E-value=16 Score=22.83 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=9.0
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 003457 358 CMVDLLGRCGKVLEAEELI 376 (818)
Q Consensus 358 ~Li~~~~~~g~~~~A~~~~ 376 (818)
.+...+...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444555555554444
No 399
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=57.61 E-value=2.5e+02 Score=29.46 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHhhcC-CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcC
Q 003457 165 DLNNARQVFDEIRNR-TLNVWTTMISGYAQ----SFRANEALMLFDQMLMEG 211 (818)
Q Consensus 165 ~~~~A~~l~~~m~~~-d~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g 211 (818)
+..+|.+.|....+. .......|...|.. ..+..+|..+|++..+.|
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC
Confidence 345555555544433 22333334444433 235566666666666655
No 400
>PRK13342 recombination factor protein RarA; Reviewed
Probab=57.58 E-value=3.2e+02 Score=30.66 Aligned_cols=44 Identities=20% Similarity=0.108 Sum_probs=27.6
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 285 WNAMISGLAS---HGHAEEALDLFRKLEKEQIVPNDITFVGVLSACC 328 (818)
Q Consensus 285 ~~~Li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 328 (818)
+..+++++.+ ..+.+.|+..+.+|.+.|..|....-..+..++.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~e 276 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASE 276 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3444555544 4788888888888888887766544444444433
No 401
>PF07589 VPEP: PEP-CTERM motif; InterPro: IPR013424 This entry describes a 25-residue region including an invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In most cases, this motif is found within nine residues of the C-terminal end of the protein. Proteins containing this motif typically have signal sequences at the N terminus [].
Probab=57.40 E-value=9.2 Score=24.02 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=12.6
Q ss_pred eccCccchhHHHHHHHHHHH
Q 003457 795 ASHGFKLQLRLEILIYALVL 814 (818)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~ 814 (818)
++|||.+...++++++|++.
T Consensus 1 ~VPEPst~~l~~~gl~~l~~ 20 (25)
T PF07589_consen 1 PVPEPSTLALLGLGLLGLAF 20 (25)
T ss_pred CCCCcHHHHHHHHHHHHHHH
Confidence 36777776666666666554
No 402
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=56.97 E-value=2.5e+02 Score=29.37 Aligned_cols=50 Identities=14% Similarity=0.149 Sum_probs=33.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhcCChhHHH
Q 003457 187 MISGYAQSFRANEALMLFDQMLMEGFEPNSVTLA-------SVLSACAQSGCLELGE 236 (818)
Q Consensus 187 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-------~ll~~~~~~g~~~~A~ 236 (818)
+.+-..+.+++++|+..|.+.+..|+..|..+.+ .+...|...|+...-.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~ 65 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLG 65 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHH
Confidence 4555667788888888888888888777765543 3445555555554433
No 403
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=56.38 E-value=2.4e+02 Score=28.82 Aligned_cols=49 Identities=20% Similarity=0.348 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 003457 382 KPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAE 431 (818)
Q Consensus 382 ~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~ 431 (818)
.|.+.....++..|. .+++++|.+.+.+..+++-+..+....+.++...
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~ 284 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLFRVVKN 284 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 477777777776654 4578888888888888776644455555544443
No 404
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=56.35 E-value=56 Score=30.50 Aligned_cols=66 Identities=11% Similarity=0.067 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHH
Q 003457 369 VLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKM 437 (818)
Q Consensus 369 ~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~e 437 (818)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|++.++....+++|.+.|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 456667777774 334444556667789999999999999999999999999999999988886555
No 405
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.29 E-value=2e+02 Score=31.80 Aligned_cols=54 Identities=6% Similarity=-0.009 Sum_probs=29.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 003457 291 GLASHGHAEEALDLFRKLEKEQIVPNDI--TFVGVLSACC--HAGFIDVGRQIFGSMKR 345 (818)
Q Consensus 291 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~--~~g~~~~A~~~~~~m~~ 345 (818)
.+.+.+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344667777777777777665 444333 2223333332 24456666666666544
No 406
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=55.66 E-value=1.4e+02 Score=26.04 Aligned_cols=78 Identities=10% Similarity=0.147 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003457 232 LELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKE 311 (818)
Q Consensus 232 ~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 311 (818)
.++|..|-+.+...+-. ...+--.-+..+...|+|++|..+.+.+.-||...|.+|.. .+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 46666666666654311 22222233456778899999999999998899999877643 4667777777777777766
Q ss_pred C
Q 003457 312 Q 312 (818)
Q Consensus 312 g 312 (818)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 5
No 407
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.66 E-value=6.9 Score=39.43 Aligned_cols=68 Identities=15% Similarity=0.076 Sum_probs=55.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH-HHHHHHHHHHHHhhhhcccCCCCCCCCCCCCC
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE-ILLVQVLFAGLASAADILQNPDFESPPTNLTP 472 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~-l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P 472 (818)
-|....+++.|+..|.+++.++|..+..|..-+.++.+..+|+.+.. .++.. +++|
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrral-----------------------ql~~ 75 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRAL-----------------------QLDP 75 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH-----------------------hcCh
Confidence 35566789999999999999999988999999999999999999888 66666 6677
Q ss_pred CCCcceeeecCC
Q 003457 473 NRSTPFVLLNGN 484 (818)
Q Consensus 473 ~~~~~~v~l~~~ 484 (818)
|...+++.+..+
T Consensus 76 N~vk~h~flg~~ 87 (284)
T KOG4642|consen 76 NLVKAHYFLGQW 87 (284)
T ss_pred HHHHHHHHHHHH
Confidence 766666666554
No 408
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.47 E-value=5.3e+02 Score=32.31 Aligned_cols=254 Identities=8% Similarity=-0.058 Sum_probs=126.2
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC
Q 003457 70 RLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLD 149 (818)
Q Consensus 70 ~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~ 149 (818)
.+.+.+..+|...-...+..+.+.+. .+++..+.++.+. +|...-...+.++.+.+........+..+++. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 44444455666666666666665554 3344444444432 23333333333333332111111223233332 35
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003457 150 LHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQS 229 (818)
Q Consensus 150 ~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 229 (818)
..+....+..+...+.-+ ...+...+..+|...-...+.++.+.+..+. +..+.. .++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHh
Confidence 555555555554433211 2334455556666655555555555444321 222222 44555555566666665
Q ss_pred CChhH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHH-HHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 230 GCLEL-GEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAK-ALFDSMPERNIATWNAMISGLASHGHAEEALDLFRK 307 (818)
Q Consensus 230 g~~~~-A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~-~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~ 307 (818)
+..+. +...+..+.+ .++..+....+.++.+.+..+.+. .+...+.+++...-...+.++.+.+. +++...+..
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 54332 2333444433 345677777777777777655443 33444445665555556666666655 345566555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003457 308 LEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKR 345 (818)
Q Consensus 308 m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~ 345 (818)
+.+ .|+...-...+.++.+......+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 554 34555555666666665334456666666554
No 409
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.35 E-value=77 Score=27.60 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 003457 50 ASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRT 109 (818)
Q Consensus 50 ~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~ 109 (818)
...||+.-.+..+|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|...
T Consensus 40 ~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 40 AVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 3445555555677778887777777777777777666553 445555555555555554
No 410
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=54.32 E-value=71 Score=27.60 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003457 199 EALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 199 ~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~ 245 (818)
++.+-++.+....+.|+.......+++|.+.+++..|.++++-+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555666777777777777777777777777777766633
No 411
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.10 E-value=3.2e+02 Score=29.39 Aligned_cols=115 Identities=12% Similarity=0.096 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---cCCHHHHHH
Q 003457 298 AEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR---CGKVLEAEE 374 (818)
Q Consensus 298 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~---~g~~~~A~~ 374 (818)
.+.-+.+++++++.++ -+......++..+.+..+.++..+.++++... .+-+...|...++.... .-.+++...
T Consensus 47 ~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 4556777888777733 34555667778888888888888888888875 44467777777765543 223445555
Q ss_pred HHHHc-------CCC--------CC--HH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003457 375 LIKRM-------VWK--------PD--VV---MWGALLAACKNHGNIEVAERVVKEIIALE 415 (818)
Q Consensus 375 ~~~~m-------~~~--------pd--~~---~~~~Li~a~~~~g~~~~A~~~~~~~~~~~ 415 (818)
+|.+. ... ++ .. .+..+..-+.+.|..+.|..+++-+++++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 44433 111 11 11 22223333457888888888888888865
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.71 E-value=86 Score=28.61 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=35.1
Q ss_pred HHHHHHHHHHh--cCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 403 VAERVVKEIIA--LEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 403 ~A~~~~~~~~~--~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.+.++|+.|.+ ++-..+..|...+..+.+.|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 88888888876 56777888999999999999999999987653
No 413
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=52.06 E-value=1.4e+02 Score=31.14 Aligned_cols=88 Identities=16% Similarity=0.083 Sum_probs=54.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH----
Q 003457 289 ISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLG---- 364 (818)
Q Consensus 289 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~---- 364 (818)
|++++..+++.+++...-+.-+.--+......-..|-.|.+.+....+.++-....+. .-+-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHH
Confidence 5677777888877765544433212223344444555677888888887777776654 22223344666666654
Q ss_pred -HcCCHHHHHHHHH
Q 003457 365 -RCGKVLEAEELIK 377 (818)
Q Consensus 365 -~~g~~~~A~~~~~ 377 (818)
=.|.+++|+++..
T Consensus 169 lPLG~~~eAeelv~ 182 (309)
T PF07163_consen 169 LPLGHFSEAEELVV 182 (309)
T ss_pred hccccHHHHHHHHh
Confidence 4688888888774
No 414
>smart00137 MAM Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others). Likely to have an adhesive function. Mutations in the meprin MAM domain affect noncovalent associations within meprin oligomers. In receptor tyrosine phosphatase mu-like molecules the MAM domain is important for homophilic cell-cell interactions.
Probab=51.81 E-value=68 Score=30.57 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=48.1
Q ss_pred CeEEEEEecCcccCccccceEEEEeeCC-c-ceeeEE-Eecc--cCCceeeeEEEEeccceeeEEEEeC-cccccCCCCc
Q 003457 710 SAYNLDFTLGDAKDACEGMFVVRVQAGS-L-VQNFTV-QSLG--TGSVIKHSVTFKAGSGSTPISFISY-NINQTKDGVF 783 (818)
Q Consensus 710 ~~y~~tf~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~--~~~~~~~~~~f~a~~~~~~~~f~~~-~~~~~~~~~~ 783 (818)
..+.|+|.. -........|+|.+-. . ...-++ +..+ ...|....+.+.......+|+|... +... .
T Consensus 75 ~~~cl~F~Y---~m~G~~~g~L~V~~~~~~~~~~~~lw~~~g~~~~~W~~~~v~l~~~~~~fqi~fe~~~g~~~--~--- 146 (161)
T smart00137 75 STHCLTFWY---YMYGSGSGTLNVYVRENNGSQDTLLWSRSGTQGGQWLQAEVALSKWQQPFQVVFEGTRGKGH--S--- 146 (161)
T ss_pred CCeEEEEEE---EecCCCCCEEEEEEEeCCCCCceEeEEEcCCCCCceEEEEEEecCCCCcEEEEEEEEEcCCc--c---
Confidence 357799984 2233344457777742 1 111222 3334 3459999999998888899999882 2111 1
Q ss_pred cccccceeeeee
Q 003457 784 CGPLIDDVVLRA 795 (818)
Q Consensus 784 ~gp~~d~v~~~~ 795 (818)
..=.||||.|.+
T Consensus 147 g~IAiDDI~i~~ 158 (161)
T smart00137 147 GYIALDDILLSN 158 (161)
T ss_pred ceEEEeEEEeec
Confidence 223699999974
No 415
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.55 E-value=4.1e+02 Score=30.13 Aligned_cols=113 Identities=13% Similarity=-0.006 Sum_probs=71.0
Q ss_pred HcCCHHHHHHHHHHHHHHhCCCCCHH-------HHHHHHHHH-HHcCCHHHHHHHHHHcC---CCCCHH--HHHHHHHHH
Q 003457 329 HAGFIDVGRQIFGSMKRVYGIEPKIE-------HYGCMVDLL-GRCGKVLEAEELIKRMV---WKPDVV--MWGALLAAC 395 (818)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~g~~p~~~-------~~~~Li~~~-~~~g~~~~A~~~~~~m~---~~pd~~--~~~~Li~a~ 395 (818)
-.|++.+|++-...|..-..-.|.+. ....++..| ...+.++.|+..|..+. .+-|.. .-..+...|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 46899999999988887654455521 112233333 46788999999888772 222332 233455568
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC----------cchHHHHHHHHHHhhchHHHHHHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALEPNN----------HGVYVVLSNMYAEAESMKMQLEILLV 444 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~----------~~~y~~L~~~l~~~G~~~eA~~l~~~ 444 (818)
.+.|+.+.-.++++ .++|.+ ..++...+-.....+++.||.+....
T Consensus 415 L~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e 470 (629)
T KOG2300|consen 415 LRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRE 470 (629)
T ss_pred HHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 88776655444444 456664 23445555566789999999995543
No 416
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.38 E-value=2.1e+02 Score=31.84 Aligned_cols=93 Identities=8% Similarity=-0.020 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcCCC--------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 003457 355 HYGCMVDLLGRCGKVLEAEELIKRMVWK--------P--DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVV 424 (818)
Q Consensus 355 ~~~~Li~~~~~~g~~~~A~~~~~~m~~~--------p--d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~ 424 (818)
+.-.|++..+-.||+..|+++++.+... | .+.++..++-+|...+++.+|++.|...+----...
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k----- 198 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK----- 198 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----
Confidence 3445677778889999999998877311 2 356777788889999999999999987653110000
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHh
Q 003457 425 LSNMYAEAESMKMQLEILLVQVLFAGLAS 453 (818)
Q Consensus 425 L~~~l~~~G~~~eA~~l~~~~~~ll~~~~ 453 (818)
-....+..++|.-.+..+.|.+++..|.
T Consensus 199 -~~~~~~~~q~d~i~K~~eqMyaLlAic~ 226 (404)
T PF10255_consen 199 -NQYHQRSYQYDQINKKNEQMYALLAICL 226 (404)
T ss_pred -hhhccccchhhHHHhHHHHHHHHHHHHH
Confidence 0122344455555555666666666665
No 417
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=51.35 E-value=3.4e+02 Score=29.11 Aligned_cols=92 Identities=13% Similarity=0.081 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCHH------HHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHH----
Q 003457 151 HVVNCLVRCYSVSSDLNNARQVFDEIRNRTLN------VWTTMI---SGYAQSFRANEALMLFDQMLMEGFEPNSV---- 217 (818)
Q Consensus 151 ~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~------~~~~Li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---- 217 (818)
.........|++-||.+.|++.+++..++++. ....++ -.|..+.-..+-++..+.+.++|-..+..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34556667788888888888888776554221 122222 22333333444555555555665443332
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003457 218 TLASVLSACAQSGCLELGEKVHVFVKM 244 (818)
Q Consensus 218 t~~~ll~~~~~~g~~~~A~~i~~~~~~ 244 (818)
+|..+ -|....++.+|-.+|-..+.
T Consensus 185 vY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 12111 12234455666555555443
No 418
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.24 E-value=1.3e+02 Score=31.42 Aligned_cols=85 Identities=11% Similarity=0.133 Sum_probs=54.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 003457 87 IRAQASSLNPDKAIFLYMNMRRT--GFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSV-- 162 (818)
Q Consensus 87 i~~~~~~g~~~~Al~lf~~m~~~--g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~-- 162 (818)
|.++++.+++.+++...-+--+. .++|. ....-|-.|.+.++...+.++-..-++..-.-+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 78888889998887654433321 23433 3333445577888888888887777765333333446666666554
Q ss_pred ---CCChHHHHHHH
Q 003457 163 ---SSDLNNARQVF 173 (818)
Q Consensus 163 ---~g~~~~A~~l~ 173 (818)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 68888887776
No 419
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=51.16 E-value=2.1e+02 Score=26.59 Aligned_cols=64 Identities=9% Similarity=-0.017 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 316 NDITFVGVLSACCHAG---FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 316 d~~t~~~ll~a~~~~g---~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
...+-..+..++.+.. +..+++.+++.+.+...-.........|.-++.+.+++++++++.+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 3333334444444433 244455555555432011111223333444455566666665555444
No 420
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.43 E-value=49 Score=34.09 Aligned_cols=181 Identities=13% Similarity=0.082 Sum_probs=110.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHH-HHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Q 003457 292 LASHGHAEEALDLFRKLEKEQIVPNDI--TFVGV-LSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGK 368 (818)
Q Consensus 292 ~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~l-l~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~ 368 (818)
+.+..+..+|+++-++.+..++. +-. .|... ++.. ..++.+-++.+.++.+. .+.|-..|..-=......|+
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l--~~dL~~El~~l~eI~e~--npKNYQvWHHRr~ive~l~d 127 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHL--MSDLNKELEYLDEIIED--NPKNYQVWHHRRVIVELLGD 127 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHh--HHHHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHhcC
Confidence 45567778888888888876322 211 22222 2221 23466667778887765 56666666544444555666
Q ss_pred HH-HHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH-hhc-----hHHHH
Q 003457 369 VL-EAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAE-AES-----MKMQL 439 (818)
Q Consensus 369 ~~-~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~-~G~-----~~eA~ 439 (818)
+. .-+++.+.|. ...+...|..--.++..-+.++.-+.+..++++.+-.+-.+|+.---+... .|- +++-+
T Consensus 128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El 207 (318)
T KOG0530|consen 128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELEREL 207 (318)
T ss_pred cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHH
Confidence 66 6667777773 334666777777777778889999999999988766555555533222222 111 12222
Q ss_pred H-HHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeeecCCCC-CCCceeeceEEEEe
Q 003457 440 E-ILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLLNGNNT-IPGWTFEGTVQYVT 500 (818)
Q Consensus 440 ~-l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l~~~~~-~~~w~~~~~v~~~~ 500 (818)
. ..+.+ .+.|+|-+++.-|.|+.. ..||.+...|..+.
T Consensus 208 ~yt~~~I-----------------------~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~ 247 (318)
T KOG0530|consen 208 NYTKDKI-----------------------LLVPNNESAWNYLKGLLELDSGLSSDSKVVSFV 247 (318)
T ss_pred HHHHHHH-----------------------HhCCCCccHHHHHHHHHHhccCCcCCchHHHHH
Confidence 2 23333 789999999999999844 57888766554444
No 421
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=50.29 E-value=2.8e+02 Score=29.87 Aligned_cols=121 Identities=13% Similarity=0.107 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH
Q 003457 296 GHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHA------GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKV 369 (818)
Q Consensus 296 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~------g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~ 369 (818)
+..+++..++++....+. |.++.....|.++-.. -++.....+|+.+.. +.|++.+-.+-.-+..+..-.
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhH
Confidence 446788899998887764 7888887777665432 367777788887765 456655444444556677778
Q ss_pred HHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 370 LEAEELIKRMVWKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 370 ~~A~~~~~~m~~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
+.++.+.+.+..+|- ...+..-...+.+.|+.++|...|++++.+.++..+
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 888888887754432 233344455678999999999999999999887544
No 422
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=49.69 E-value=5.2e+02 Score=32.48 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003457 296 GHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAG--FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAE 373 (818)
Q Consensus 296 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g--~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~ 373 (818)
++.....+.+++..+.. .-...-+..++.+|.+.+ ++++|++....+.+. +...|.
T Consensus 792 ~KVn~ICdair~~l~~~-~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~---------------------~~~~ae 849 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKP-KDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE---------------------DPESAE 849 (928)
T ss_pred cHHHHHHHHHHHHhccc-ccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc---------------------ChHHHH
Confidence 44555555555544321 112334456778888887 788888888776643 223333
Q ss_pred HHHHHcCCCCCH-HHH----------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHH
Q 003457 374 ELIKRMVWKPDV-VMW----------GALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 374 ~~~~~m~~~pd~-~~~----------~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l 441 (818)
+.++.+..--|+ ..| ..++-|-..++|..|=+-++++..++.|.. . --.+=...+||+.|++-
T Consensus 850 ~alkyl~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~-r----ry~ID~hLkRy~kAL~~ 923 (928)
T PF04762_consen 850 EALKYLCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPPLY-R----RYKIDDHLKRYEKALRH 923 (928)
T ss_pred HHHhHheeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCChhh-e----eeeHhhhhCCHHHHHHH
Confidence 333333211111 111 223334456778888888888888776652 1 11233456788888873
No 423
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=48.97 E-value=75 Score=32.02 Aligned_cols=59 Identities=10% Similarity=0.039 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCH-------HHHHHHHHHHHhcC--CC----CcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 387 MWGALLAACKNHGNI-------EVAERVVKEIIALE--PN----NHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 387 ~~~~Li~a~~~~g~~-------~~A~~~~~~~~~~~--P~----~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.+..+...|...|+. ..|.+.|+++++.. |. .......++.+..|.|++++|.+.+..+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 334444455555553 33444444444422 21 2356667777777888888888766555
No 424
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.20 E-value=1.6e+02 Score=24.96 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 350 EPKIEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 350 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
+.|......+...+...|++++|++.+-++
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555556666666666666666555444
No 425
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=48.01 E-value=5e+02 Score=32.00 Aligned_cols=45 Identities=11% Similarity=-0.056 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcC
Q 003457 355 HYGCMVDLLGRCGKVLEAEELIKRM----VWKPDVVMWGALLAACKNHG 399 (818)
Q Consensus 355 ~~~~Li~~~~~~g~~~~A~~~~~~m----~~~pd~~~~~~Li~a~~~~g 399 (818)
++..-...+...|++-.|++++.++ ..++....|..++..+...|
T Consensus 1233 ~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1233 VWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred heehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3333333344455555555544444 12334444444444444444
No 426
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.38 E-value=37 Score=24.62 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=14.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 003457 288 MISGLASHGHAEEALDLFRKLEKE 311 (818)
Q Consensus 288 Li~~~~~~g~~~~A~~l~~~m~~~ 311 (818)
|..+|...|+.+.|.++++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455566666666666666665543
No 427
>PF15425 DUF4627: Domain of unknown function (DUF4627); PDB: 3SEE_A.
Probab=47.21 E-value=2.7e+02 Score=26.86 Aligned_cols=75 Identities=28% Similarity=0.410 Sum_probs=29.7
Q ss_pred CCcccCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEEe-----c--eeeeecCCceeccCCCeeEEecCC------
Q 003457 629 DNLLLNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSVI-----G--TVKYIDSKHFYVPKGNAAIEIVSV------ 695 (818)
Q Consensus 629 ~~l~~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-----~--~v~~i~~~~~~~~~g~~~~~l~~~------ 695 (818)
-|||+||+|.+ |....+++... .+..-|=+- | ..-++.++. ..-..+++..+.
T Consensus 6 QnLIkN~~F~t-~Lt~e~~~as~----------~T~~~Wfavnde~~G~Tt~a~~~tnD---~k~~na~~is~~~~~tsW 71 (212)
T PF15425_consen 6 QNLIKNGDFDT-PLTNENTTASN----------TTFGKWFAVNDEWDGATTIAWINTND---QKTGNAWGISSWDKQTSW 71 (212)
T ss_dssp ----SSTT--S-----B-SSGGG----------S-TTSEEEEE-S-TTS-EEEEEE-S----TTS-EEEEETT-SS---T
T ss_pred hhhhhcCccCc-chhccccCcCc----------ccccceEEEecccCCceEeeeeccCc---ccccceEEEeecccCcHH
Confidence 49999999996 76543333211 345567541 1 233343332 222345666331
Q ss_pred --ccceeeeeccccCCCeEEEEEec
Q 003457 696 --SAGIQTATTMLTEGSAYNLDFTL 718 (818)
Q Consensus 696 --~~~~q~~~~~~~~g~~y~~tf~~ 718 (818)
....|.+....++ ..|.|+|..
T Consensus 72 ykafLaQr~~~gae~-~mYtLsF~A 95 (212)
T PF15425_consen 72 YKAFLAQRYTNGAEK-GMYTLSFDA 95 (212)
T ss_dssp TTEEEEEEE-S---S-SEEEEEEEE
T ss_pred HHHHHHHHHhccccc-ceEEEEEEe
Confidence 2234888442455 479999993
No 428
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.95 E-value=12 Score=39.84 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=52.9
Q ss_pred HcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHH
Q 003457 365 RCGKVLEAEELIKRMV-WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 365 ~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~ 442 (818)
..|.+++|++.|.... ..| ....|..-.+++.+.++...|++-+..+++++||...-|-.-+.+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 4556777777776652 223 34555555666677777777777777777777777777766666666677777776655
Q ss_pred HHH
Q 003457 443 LVQ 445 (818)
Q Consensus 443 ~~~ 445 (818)
...
T Consensus 206 ~~a 208 (377)
T KOG1308|consen 206 ALA 208 (377)
T ss_pred HHH
Confidence 443
No 429
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.57 E-value=72 Score=31.42 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=31.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003457 380 VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEP 416 (818)
Q Consensus 380 ~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P 416 (818)
...|+...+..++.++...|+.++|.+..+++..+.|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3568888888888888888888888888888888888
No 430
>PRK10941 hypothetical protein; Provisional
Probab=46.57 E-value=2.2e+02 Score=29.81 Aligned_cols=71 Identities=11% Similarity=-0.027 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHH
Q 003457 286 NAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYG 357 (818)
Q Consensus 286 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~ 357 (818)
+.+-.+|.+.+++++|+.+.+.+....+. +..-+.--.-.|.+.|.+..|..-++..++...-.|+.....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 33444555555555555555555553211 233333334445555555555555555554433333333333
No 431
>PF13934 ELYS: Nuclear pore complex assembly
Probab=46.16 E-value=1.8e+02 Score=29.50 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=9.3
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 003457 323 VLSACCHAGFIDVGRQIFGS 342 (818)
Q Consensus 323 ll~a~~~~g~~~~A~~~~~~ 342 (818)
++.++...++.+.|..+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 34444444555555544444
No 432
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.76 E-value=2.2e+02 Score=25.26 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 230 GCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLE 309 (818)
Q Consensus 230 g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 309 (818)
...++|..|.+.+...+. ....+.-.-+..+.+.|+|++|...=.....||...|.+|. -.+.|..+++...+.++-
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHH
Confidence 346788888888877653 23333334455677888888885544455557888876553 456777787777777765
Q ss_pred HcC
Q 003457 310 KEQ 312 (818)
Q Consensus 310 ~~g 312 (818)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 544
No 433
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=45.62 E-value=4.5e+02 Score=28.93 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=50.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCCCH--HHH-HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCH-----HHHH
Q 003457 288 MISGLASHGHAEEALDLFRKLEKE--QIVPND--ITF-VGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKI-----EHYG 357 (818)
Q Consensus 288 Li~~~~~~g~~~~A~~l~~~m~~~--g~~pd~--~t~-~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~-----~~~~ 357 (818)
|...+-..|+.++|..++.++.-. |.---. +.| .-=++.|...+|+-.|.-+-+++..++--.|+. .-|+
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~ 216 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYE 216 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHH
Confidence 444555666666666666554311 000000 000 111345666777777777766666654444553 3566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc
Q 003457 358 CMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 358 ~Li~~~~~~g~~~~A~~~~~~m 379 (818)
.+++.....+.+-.+.+.|+..
T Consensus 217 lmI~l~lh~~~Yl~v~~~Yrai 238 (439)
T KOG1498|consen 217 LMIRLGLHDRAYLNVCRSYRAI 238 (439)
T ss_pred HHHHhcccccchhhHHHHHHHH
Confidence 6777666777777777777666
No 434
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=45.46 E-value=1.1e+02 Score=27.65 Aligned_cols=61 Identities=8% Similarity=0.074 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-------hcCCCCcchH----HHHHHHHHHhhchHHHHHHHHHH
Q 003457 385 VVMWGALLAACKNHGNIEVAERVVKEII-------ALEPNNHGVY----VVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 385 ~~~~~~Li~a~~~~g~~~~A~~~~~~~~-------~~~P~~~~~y----~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
...+..|..++...|++++++.-.++++ +++.+.-..| ..-+..+...|+.+||++.+++.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3445555566667777766665554444 3555543333 44566778889999999977665
No 435
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.43 E-value=53 Score=27.19 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=6.4
Q ss_pred HHHHHHHcCCHHHHHH
Q 003457 391 LLAACKNHGNIEVAER 406 (818)
Q Consensus 391 Li~a~~~~g~~~~A~~ 406 (818)
|+.++...|+++++++
T Consensus 49 l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 49 LIQAHMEWGKYREMLA 64 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444333
No 436
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=44.59 E-value=1.3e+02 Score=26.34 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 380 VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 380 ~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
..-|++....+.+.+|.+..++.-|+++++-....-.+....|..+
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 3557888888888888888888888888877765544434455544
No 437
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.48 E-value=44 Score=24.28 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=11.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 003457 187 MISGYAQSFRANEALMLFDQMLM 209 (818)
Q Consensus 187 Li~~~~~~g~~~~A~~l~~~m~~ 209 (818)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555543
No 438
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.19 E-value=78 Score=27.05 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=31.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC---------cchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALEPNN---------HGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~---------~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.+.|++.+|.+.+.+..+..... ..+...++.+....|++++|.+.++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 56777777777776666533221 223455677777888888888855444
No 439
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=43.95 E-value=1.3e+02 Score=25.44 Aligned_cols=64 Identities=11% Similarity=0.134 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHH
Q 003457 135 KQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEA 200 (818)
Q Consensus 135 ~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A 200 (818)
.++++.+++.|+- +......+-..--..|+.+.|.++++.+. +.+..|..++.++.+.|.-+-|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4455555555532 22222222221124466666666666666 6666666666666666654444
No 440
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=43.77 E-value=4.4e+02 Score=28.23 Aligned_cols=54 Identities=19% Similarity=0.166 Sum_probs=27.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 287 AMISGLASHGHAEEALDLFRKLEKEQIVPNDI---TFVGVLSACCHAGFIDVGRQIFGS 342 (818)
Q Consensus 287 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~A~~~~~~ 342 (818)
.|..+-.+.|+..+|.+.|+++.+. .|-.. ....|+.+|....-+.....++.+
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445667777777777776654 22111 122455555555544444444443
No 441
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.67 E-value=2.2e+02 Score=33.81 Aligned_cols=168 Identities=12% Similarity=0.096 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhCCCHHHHHHHHhhCCC-CChh----------hHHHHHHHHHHcCCH
Q 003457 233 ELGEKVHVFVKMRGFEMG---AILGTALVHMYTKNGALAKAKALFDSMPE-RNIA----------TWNAMISGLASHGHA 298 (818)
Q Consensus 233 ~~A~~i~~~~~~~g~~~~---~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-~d~~----------~~~~Li~~~~~~g~~ 298 (818)
++-..++.+|.++=-.|+ ..+...++-.|....+++...++.+.+.+ ||.. .|.--+.---+-|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 344456666666532333 34555667777778888888888777664 3211 111111112234777
Q ss_pred HHHHHHHHHHHHc--CCCCCHHHHHH-----H--HHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH
Q 003457 299 EEALDLFRKLEKE--QIVPNDITFVG-----V--LSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKV 369 (818)
Q Consensus 299 ~~A~~l~~~m~~~--g~~pd~~t~~~-----l--l~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~ 369 (818)
++|+...-.|.+. .+.||..++.. + -..|...+..+.|.+.|++.. ...|+...--.+...+...|+.
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhh
Confidence 8888877777653 34566443211 1 122334556777888887765 4678776665666666666654
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 370 LEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEI 411 (818)
Q Consensus 370 ~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~ 411 (818)
-+--.-+++++ ..+++ .+.+.|..++-.++|+-+
T Consensus 337 Fens~Elq~Ig-----mkLn~---LlgrKG~leklq~YWdV~ 370 (1226)
T KOG4279|consen 337 FENSLELQQIG-----MKLNS---LLGRKGALEKLQEYWDVA 370 (1226)
T ss_pred ccchHHHHHHH-----HHHHH---HhhccchHHHHHHHHhHH
Confidence 33333334333 22233 346788888777777644
No 442
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.48 E-value=91 Score=30.69 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 349 IEPKIEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 349 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
..|+..+|..++..+...|+.++|.+..+++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555555555555555555555555
No 443
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.83 E-value=4.4e+02 Score=27.74 Aligned_cols=93 Identities=10% Similarity=0.066 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCH------HHHHHH---HHHHHHcCChHHHHHHHHHHHHcCCCCCHH---
Q 003457 150 LHVVNCLVRCYSVSSDLNNARQVFDEIRNRTL------NVWTTM---ISGYAQSFRANEALMLFDQMLMEGFEPNSV--- 217 (818)
Q Consensus 150 ~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~------~~~~~L---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--- 217 (818)
...+..+...|++.+|.+.+.+..++..++.. ..+-.. .-.|....-.++-++..+.|.+.|-..+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 45667778888888888888887777654322 222222 223334444566677777777776543322
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 003457 218 -TLASVLSACAQSGCLELGEKVHVFVKM 244 (818)
Q Consensus 218 -t~~~ll~~~~~~g~~~~A~~i~~~~~~ 244 (818)
+|.-+. +....++.+|-.++.....
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 222111 1233455555555555543
No 444
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=41.33 E-value=57 Score=26.08 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=28.2
Q ss_pred ee-ccCCCeeEEecCCccce--eeeeccccCCCeEEEEEec
Q 003457 681 FY-VPKGNAAIEIVSVSAGI--QTATTMLTEGSAYNLDFTL 718 (818)
Q Consensus 681 ~~-~~~g~~~~~l~~~~~~~--q~~~~~~~~g~~y~~tf~~ 718 (818)
+. +|.|.|.|++-.++.-. +++. +.+|+...|.+.|
T Consensus 29 ~~~l~~G~~~v~v~~~Gy~~~~~~v~--v~~~~~~~v~~~L 67 (71)
T PF08308_consen 29 LKDLPPGEHTVTVEKPGYEPYTKTVT--VKPGETTTVNVTL 67 (71)
T ss_pred eeecCCccEEEEEEECCCeeEEEEEE--ECCCCEEEEEEEE
Confidence 44 88999999997766544 6666 7889999998886
No 445
>cd08523 Reeler_cohesin_like Domains similar to the eukaryotic reeler domain and bacterial cohesins. This diverse family summarizes a set of distantly related domains, as revealed by structural similarity.
Probab=41.30 E-value=1.7e+02 Score=26.70 Aligned_cols=30 Identities=10% Similarity=0.147 Sum_probs=23.0
Q ss_pred ccCCCeEEEEEecCcccCcc--ccceEEEEeeCCc
Q 003457 706 LTEGSAYNLDFTLGDAKDAC--EGMFVVRVQAGSL 738 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~~~--~~~~~~~~~~~~~ 738 (818)
+.+|++|.|||. .++.| +.--.+.|..+.+
T Consensus 9 ~~~Gs~~~vtf~---Vp~e~~~a~ttk~~v~lp~~ 40 (124)
T cd08523 9 VQVGTNLEVTLS---IDEPVNFAPEIEFTVNLKSN 40 (124)
T ss_pred ccCCceEEEEEE---CCCCccCcceEEEEEEcCCC
Confidence 579999999999 66666 4455777788666
No 446
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=41.24 E-value=4.6e+02 Score=27.80 Aligned_cols=157 Identities=13% Similarity=0.161 Sum_probs=67.8
Q ss_pred HHHHHHhhhhcCC--CHHHHHHHHhhc-C-CCCHHHHHHHHHHHHhCC-----ChhHHHHHHHH--------H-HHcCCC
Q 003457 51 SRLLAFCALSSSG--DLSYATRLFNSI-Q-SPNHFMWNTLIRAQASSL-----NPDKAIFLYMN--------M-RRTGFA 112 (818)
Q Consensus 51 ~~Ll~~~a~~k~g--~~e~A~~lf~~~-~-~p~~~~yn~Li~~~~~~g-----~~~~Al~lf~~--------m-~~~g~~ 112 (818)
..+-..+++++.| +++.++.+...+ . +++...|..++..+.... ..+.....|+. + .+.|..
T Consensus 40 ~ll~D~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 119 (324)
T PF11838_consen 40 QLLDDLFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWD 119 (324)
T ss_dssp HHHHHHHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3334555556666 466788888877 4 678788887776543321 11111111221 1 112333
Q ss_pred CC------HHHH-HHHHHHHHccCC---hHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 003457 113 PN------QHTF-TFVLKACSNVRS---LNCCKQIHTHVSKSGL----DLDLHVVNCLVRCYSVSSDLNNARQVFDEIRN 178 (818)
Q Consensus 113 pd------~~ty-~~ll~~~~~~g~---~~~A~~~~~~m~~~g~----~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~ 178 (818)
+. .... ..++...+ |+ .+.|.+.++..+..+. ..+......+.....+.|+.+.-..+++....
T Consensus 120 ~~~~~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~ 197 (324)
T PF11838_consen 120 PRPGEDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN 197 (324)
T ss_dssp SS--SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT
T ss_pred CcccccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc
Confidence 32 1111 12222222 22 3444555555554311 23444445555555555555544444444443
Q ss_pred C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003457 179 R-TLNVWTTMISGYAQSFRANEALMLFDQMLM 209 (818)
Q Consensus 179 ~-d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 209 (818)
. +......++.+.+...+.+...++++....
T Consensus 198 ~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 198 STSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 2 333445555555555555555555555554
No 447
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=41.13 E-value=98 Score=27.41 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEK 310 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~ 310 (818)
-|..|+..|..+|.+++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467788888888888888888887766
No 448
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.80 E-value=2.5e+02 Score=34.04 Aligned_cols=176 Identities=13% Similarity=0.107 Sum_probs=109.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 003457 194 SFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKAL 273 (818)
Q Consensus 194 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~ 273 (818)
++++++.+.+.+...--| ..+|.-+.+.|-.+-|..+.+.- .+ -......+|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~---------~t---RF~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDE---------RT---RFELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCc---------ch---heeeehhcCCHHHHHHH
Confidence 456676665554432111 22344445566655554433221 11 12345678999999887
Q ss_pred HhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCH
Q 003457 274 FDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKI 353 (818)
Q Consensus 274 f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~ 353 (818)
-.++- +...|..|+..-..+|+.+-|+..|++.+. |..|--.|.-.|+.++-.++.+.+..+ .|.
T Consensus 666 akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r----~D~ 730 (1202)
T KOG0292|consen 666 AKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR----NDA 730 (1202)
T ss_pred HHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh----hhh
Confidence 76664 456899999999999999999999987653 333334466678888777766655432 232
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 354 EHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 354 ~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
.. ....-...|+.++-.++++..+..|- .|. .-..+|.-++|.++.++.-.
T Consensus 731 ~~---~~qnalYl~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 731 TG---QFQNALYLGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HH---HHHHHHHhccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 22 11222357899999999998864331 111 12457888888888887766
No 449
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.80 E-value=5.4e+02 Score=28.49 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003457 151 HVVNCLVRCYSVSSDLNNARQVFDEIRNR------TLNVWTTMISGYAQSFRANEALMLFDQMLM 209 (818)
Q Consensus 151 ~~~~~Li~~y~~~g~~~~A~~l~~~m~~~------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 209 (818)
..+.-+.+.|..+|+++.|.+.|.+..+- -+..|-.+|..-...++|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 35667888899999999999999886541 233566777777777888777777666654
No 450
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.59 E-value=2.5e+02 Score=28.50 Aligned_cols=120 Identities=8% Similarity=0.006 Sum_probs=60.5
Q ss_pred HHHHHHHHH--hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003457 83 WNTLIRAQA--SSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCY 160 (818)
Q Consensus 83 yn~Li~~~~--~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y 160 (818)
|..+++++- -++++++|++++-.- .+.|+. -..++.++...++.+.|.++++.+.-. -.+......++..
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~- 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA- 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-
Confidence 444555543 346666777666211 111111 123566666677777777776653211 1122222333333
Q ss_pred HhCCChHHHHHHHHHhhcCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003457 161 SVSSDLNNARQVFDEIRNRT-LNVWTTMISGYAQSFRANEALMLFDQMLMEGFE 213 (818)
Q Consensus 161 ~~~g~~~~A~~l~~~m~~~d-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 213 (818)
..++.+.+|..+-+...++. ...+..++..+...... ...++++...-+.
T Consensus 151 La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~---~~~~~~Ll~LPl~ 201 (226)
T PF13934_consen 151 LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEECAR---SGRLDELLSLPLD 201 (226)
T ss_pred HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhhh---hhHHHHHHhCCCC
Confidence 56678888877776665532 34566666666544431 2234555554333
No 451
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=39.36 E-value=4.6e+02 Score=27.26 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 003457 82 MWNTLIRAQASSLNPDKAIFLYMNMRR 108 (818)
Q Consensus 82 ~yn~Li~~~~~~g~~~~Al~lf~~m~~ 108 (818)
..+.+++.+.+.+....|+.+.+.+..
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 345677777777777788777777654
No 452
>PRK14700 recombination factor protein RarA; Provisional
Probab=39.10 E-value=5e+02 Score=27.60 Aligned_cols=138 Identities=9% Similarity=-0.059 Sum_probs=73.4
Q ss_pred CCChhHHHHHHHHhcC-------chHHHHHHHHHHHh----C---CCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC
Q 003457 12 PLPIPPLSLLADKCKS-------MHQLKQIHAQMIIS----S---RIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQS 77 (818)
Q Consensus 12 ~p~~~tl~~ll~~c~~-------~~~~~~~~~~~~~~----g---~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~ 77 (818)
.|.-..-.++++.|.- ..+...+....+.. | +..+......|+.+. .||...|+..++.+..
T Consensus 18 NP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a----~GDaR~aLN~LE~a~~ 93 (300)
T PRK14700 18 NPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYN----EGDCRKILNLLERMFL 93 (300)
T ss_pred CccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhc----CCHHHHHHHHHHHHHh
Confidence 3554445577777742 22334444444431 2 456777777777655 8999999999887431
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-cCCCC--CHHHHHHHHHHHH---ccCChHHHHHHHHHHHHcCCCCCHH
Q 003457 78 PNHFMWNTLIRAQASSLNPDKAIFLYMNMRR-TGFAP--NQHTFTFVLKACS---NVRSLNCCKQIHTHVSKSGLDLDLH 151 (818)
Q Consensus 78 p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~-~g~~p--d~~ty~~ll~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~ 151 (818)
-. ...+...--.+.+++..+ ....- +-..+--+++++. +..|.+.|.-.+..|++.|..|...
T Consensus 94 ~~-----------~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~I 162 (300)
T PRK14700 94 IS-----------TRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVI 162 (300)
T ss_pred hc-----------cccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHH
Confidence 00 000000001122222111 11111 2223333445543 4567888888888888888776666
Q ss_pred HHHHHHHHHHhCC
Q 003457 152 VVNCLVRCYSVSS 164 (818)
Q Consensus 152 ~~~~Li~~y~~~g 164 (818)
.-..++-++-.-|
T Consensus 163 aRRLii~AsEDIG 175 (300)
T PRK14700 163 ARRMLCIASEDIG 175 (300)
T ss_pred HHHHHHHHHhhcc
Confidence 6666665555555
No 453
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=38.69 E-value=4e+02 Score=26.34 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=30.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC--------------CcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 003457 221 SVLSACAQSGCLELGEKVHVFVKMRGFE--------------MGAILGTALVHMYTKNGALAKAKALFD 275 (818)
Q Consensus 221 ~ll~~~~~~g~~~~A~~i~~~~~~~g~~--------------~~~~~~~~Li~~~~~~g~~~~A~~~f~ 275 (818)
+++..|.+..++.++.++++.+.+..+. +.-.+.|.-+..+.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 3445566666677777777666654221 112344455555666666666666555
No 454
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=38.43 E-value=5.3e+02 Score=27.70 Aligned_cols=62 Identities=11% Similarity=-0.000 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 003457 198 NEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMY 261 (818)
Q Consensus 198 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~ 261 (818)
+.-+.+|+++++.+ +-+.......+..+.+.-+.++..+.++.++... +-+..++...++..
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHH
Confidence 44456666666553 3444555556666666666666666666666653 33455555555443
No 455
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=37.78 E-value=48 Score=34.78 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=45.4
Q ss_pred HHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 003457 363 LGRCGKVLEAEELIKRM-VWKPD-VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVV 424 (818)
Q Consensus 363 ~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~ 424 (818)
..+.|+.++|..+|+.+ ...|+ +..+.-+.......+++-+|-++|-+++.+.|.+.+++.+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34678888888888876 34453 5555666665666778888889999998888887766643
No 456
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=37.25 E-value=47 Score=33.51 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=47.6
Q ss_pred HHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003457 362 LLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 362 ~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~ 419 (818)
+..+.++.+.|.+++.++ ...| ....|-.+...-.+.|+++.|.+.|++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456788888888988887 3334 477888888888899999999999999999999864
No 457
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=36.48 E-value=1.1e+02 Score=21.04 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=12.7
Q ss_pred HHHHHHHHcCCHHHHHHH--HHHHHhcCC
Q 003457 390 ALLAACKNHGNIEVAERV--VKEIIALEP 416 (818)
Q Consensus 390 ~Li~a~~~~g~~~~A~~~--~~~~~~~~P 416 (818)
.+.-.+-..|++++|+++ |+-+..++|
T Consensus 6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 334444555566666665 334444444
No 458
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=36.25 E-value=9.7e+02 Score=30.06 Aligned_cols=144 Identities=10% Similarity=0.034 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---CCCCCH--------HHHHHHHHHHH
Q 003457 296 GHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVY---GIEPKI--------EHYGCMVDLLG 364 (818)
Q Consensus 296 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~---g~~p~~--------~~~~~Li~~~~ 364 (818)
|..---.++|+++.+. +|-.+...+.-+.+..|.++-+.+....+.+.. .++-+. ..|-.-+.++.
T Consensus 670 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (932)
T PRK13184 670 GFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALS 746 (932)
T ss_pred cCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHH
Confidence 4444445566666553 344666666667788888888877766655321 111111 12333355666
Q ss_pred HcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHHhhchHHHHHH
Q 003457 365 RCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN---HGVYVVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 365 ~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~---~~~y~~L~~~l~~~G~~~eA~~l 441 (818)
....++++.+.+.......-...+..++.-+...++.+.-.++.+.+.+..+.. .......+.+|.-..++++|.++
T Consensus 747 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 826 (932)
T PRK13184 747 NKEDYEKAFKHLDNTDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQAHLWNRDLKKAYKL 826 (932)
T ss_pred ccccHHHHHhhhhhCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHHHHHhccHHHHHHH
Confidence 677788888766665311113344444444455566666666666655543321 22334556677777888889886
Q ss_pred H
Q 003457 442 L 442 (818)
Q Consensus 442 ~ 442 (818)
+
T Consensus 827 ~ 827 (932)
T PRK13184 827 L 827 (932)
T ss_pred H
Confidence 6
No 459
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.15 E-value=4.9e+02 Score=26.64 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=36.2
Q ss_pred HHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 272 ALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACC 328 (818)
Q Consensus 272 ~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 328 (818)
.+|+-.-+|.+.....++..|. .+++++|.+++.++-+.|..|... .+.+.+.+-
T Consensus 229 nVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 229 NVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred hhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 3444444566666666666554 478899999999999998887653 344445443
No 460
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.08 E-value=1.6e+03 Score=32.51 Aligned_cols=425 Identities=13% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCCChhHHHHHHHHhcCchHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC---CCCHHHHHHHH
Q 003457 11 PPLPIPPLSLLADKCKSMHQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQ---SPNHFMWNTLI 87 (818)
Q Consensus 11 ~~p~~~tl~~ll~~c~~~~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~---~p~~~~yn~Li 87 (818)
..++..++.++..-+.++.+....+..-.++-.-|+..+.-+ | .+.|.+++|..+|++.. ..+...|..-=
T Consensus 2450 ~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~eT~~a~s----~--eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~E 2523 (3550)
T KOG0889|consen 2450 TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFPETMVALS----Y--EQLGFWEEAQSLYEKAQVKAREGAIPYSESE 2523 (3550)
T ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccHHHHHHHH----H--HHhhhHHHHhhHHHHHHHHHhcccCCCCcHH
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhCC
Q 003457 88 RAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDL---DLHVVNCLVRCYSVSS 164 (818)
Q Consensus 88 ~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~Li~~y~~~g 164 (818)
..+-...=..=|.++-+++......-....+..++....+.-++..-+..+....+.-.++ ....|..++..+.+..
T Consensus 2524 y~lWed~WI~Ca~eL~QWdvl~e~~k~~~~~~llle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 2603 (3550)
T KOG0889|consen 2524 YKLWEDHWIRCASELQQWDVLTEFGKHEGNYELLLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNS 2603 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHh
Q ss_pred C------------hHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHH-Hh
Q 003457 165 D------------LNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLME---GFEPNSVTLASVLSAC-AQ 228 (818)
Q Consensus 165 ~------------~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~t~~~ll~~~-~~ 228 (818)
+ .+.+.+-+++++..-......++.++.+--...+|..++..+... ++.-...-+..++... -+
T Consensus 2604 ~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n~~n~~~~~~d~Ksil~~Wr~R 2683 (3550)
T KOG0889|consen 2604 NGVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGNVQNLDNKAQDIKSILQTWRDR 2683 (3550)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHHHHHHhhc
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC---CHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 003457 229 SGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNG---ALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLF 305 (818)
Q Consensus 229 ~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g---~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~ 305 (818)
.-....-...+..+..-. ..+|..+..+|.... .-...-...-..-..-..+-|.......++|-++-+...+
T Consensus 2684 lP~~~Dd~~~Wsdl~~WR----q~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fakvArkh~l~~vcl~~L 2759 (3550)
T KOG0889|consen 2684 LPNVWDDMNQWSDLITWR----QHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFAKVARKHGLPDVCLNQL 2759 (3550)
T ss_pred CCCcchhHHHHHHHHHHH----HHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q ss_pred HHHHHcCCCCCHHHHHHH---HHHHHHcC-CHHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 003457 306 RKLEKEQIVPNDITFVGV---LSACCHAG-FIDVGRQIFGSM-KRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV 380 (818)
Q Consensus 306 ~~m~~~g~~pd~~t~~~l---l~a~~~~g-~~~~A~~~~~~m-~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 380 (818)
.++-....-+=...|..+ +.+|.... ....+.++.+.. +..+...-....++.-.....+.|+.++|-+.|..+.
T Consensus 2760 ~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~kL~~~eeAn~~fs~Av 2839 (3550)
T KOG0889|consen 2760 AKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEKLGKFEEANKAFSAAV 2839 (3550)
T ss_pred HHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHHhcCcchhHHHHHHHH
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhh
Q 003457 381 WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQVLFAGLASAAD 456 (818)
Q Consensus 381 ~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~~ll~~~~~~~ 456 (818)
..-+.. .+.+.+--....+.....|.+...-...+.+|.++=++..-.+.++.+...+|.-+.++
T Consensus 2840 Qi~~~l-----------~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~iakvLwLls~dd 2904 (3550)
T KOG0889|consen 2840 QIDDGL-----------GKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKLIAKVLWLLSFDD 2904 (3550)
T ss_pred HHHhhh-----------HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhcc
No 461
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=35.84 E-value=6e+02 Score=27.54 Aligned_cols=168 Identities=10% Similarity=0.094 Sum_probs=78.2
Q ss_pred HHHHHHHHHhh-hhcCCCHHHHHHHHhhcCCCCHHHHHH-----HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 003457 48 FAASRLLAFCA-LSSSGDLSYATRLFNSIQSPNHFMWNT-----LIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFV 121 (818)
Q Consensus 48 ~~~~~Ll~~~a-~~k~g~~e~A~~lf~~~~~p~~~~yn~-----Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~l 121 (818)
..+|++++.-. ..-+--++.|..+|..=. ....|.. +.+.+++.++-+.+..+-+.+.. -|...-+ .+
T Consensus 130 A~fhA~v~~~L~~p~S~yye~a~~Ylsg~~--~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~---lP~~vl~-aL 203 (340)
T PF12069_consen 130 AMFHAQVRAQLGQPASQYYEHAQAYLSGQL--GWDNWQTLGLQGIADICARLDQEDNAQLLRKALPH---LPPEVLY-AL 203 (340)
T ss_pred HHHHHHHHHHcCCCcchhHHHHHHHHcCCc--chhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhh---CChHHHH-HH
Confidence 45555554330 011123566666554221 1344444 34667777766665555444433 2333322 33
Q ss_pred HHHHHccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC----CHHHHHHHH-HHHHHcC
Q 003457 122 LKACSNVRSL-NCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR----TLNVWTTMI-SGYAQSF 195 (818)
Q Consensus 122 l~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~----d~~~~~~Li-~~~~~~g 195 (818)
..++-...-. .-+..+.+.+... +|......++++.+...........++.+.+. +....-.+. +......
T Consensus 204 ~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~~~~~~~e~Li~IAgR~W~~L~ 280 (340)
T PF12069_consen 204 CGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQSPRLCHPEVLIAIAGRCWQWLK 280 (340)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcCcccCChHHHHHHHhcCchhcC
Confidence 3333222212 2233344443332 67777777777777766665555545554432 222222222 2223334
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 196 RANEALMLFDQMLMEGFEPNSVTLASVLSACA 227 (818)
Q Consensus 196 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~ 227 (818)
+.+....+++++-.. +|...|+.+..-+.
T Consensus 281 d~~~l~~fle~LA~~---~~~~lF~qlfaDLv 309 (340)
T PF12069_consen 281 DPQLLRLFLERLAQQ---DDQALFNQLFADLV 309 (340)
T ss_pred CHHHHHHHHHHHHcc---cHHHHHHHHHHHHH
Confidence 555555566665443 23455555554443
No 462
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.73 E-value=54 Score=25.73 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=12.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 286 NAMISGLASHGHAEEALDLFRKLE 309 (818)
Q Consensus 286 ~~Li~~~~~~g~~~~A~~l~~~m~ 309 (818)
-..|.+|.+.|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555555555555544
No 463
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.31 E-value=7.9e+02 Score=30.90 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCC--CHHHHHHHHhhCCCC
Q 003457 252 ILGTALVHMYTKNG--ALAKAKALFDSMPER 280 (818)
Q Consensus 252 ~~~~~Li~~~~~~g--~~~~A~~~f~~m~~~ 280 (818)
.....++.+|.+.+ ++++|+....++.+.
T Consensus 813 ~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 813 KYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 33445666677666 677777776666654
No 464
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.01 E-value=7.8e+02 Score=28.63 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRK 307 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~ 307 (818)
+.-.+...+..+|+.+-|.++.++
T Consensus 286 sLLqva~~~r~qgD~e~aadLieR 309 (665)
T KOG2422|consen 286 SLLQVADIFRFQGDREMAADLIER 309 (665)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHH
Confidence 334444455566665555554444
No 465
>PF15469 Sec5: Exocyst complex component Sec5
Probab=34.81 E-value=4.3e+02 Score=25.59 Aligned_cols=88 Identities=16% Similarity=0.308 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003457 322 GVLSACCHAGFIDVGRQIFGSMKRVYGIEP-KIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGN 400 (818)
Q Consensus 322 ~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~ 400 (818)
.-+.-|.+.|+++.+...|.++...++-.. ....+..+ +.++.++.+.+. ...|..|... ...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v---------~~eve~ii~~~r----~~l~~~L~~~---~~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV---------WSEVEKIIEEFR----EKLWEKLLSP---PSS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH---------HHHHHHHHHHHH----HHHHHHHhCC---CCC
Confidence 345667778888888888877665422211 22222221 222222222221 1112222211 156
Q ss_pred HHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 401 IEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 401 ~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
.++..++.+.+++++|+.-.++.++
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 7778888888888888655555544
No 466
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=34.59 E-value=6.1e+02 Score=27.22 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 003457 358 CMVDLLGRCGKVLEAEELIKRM-VWKPD---VVMWGALLAACKNHGNIEVAERVVKEIIAL 414 (818)
Q Consensus 358 ~Li~~~~~~g~~~~A~~~~~~m-~~~pd---~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~ 414 (818)
.|..+-.+.|+..+|.+.|+.+ +..|- .....+|+.+|....-+.+...++-+.-++
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4444445567777777777665 22232 123345566666555555555555444443
No 467
>PF14299 PP2: Phloem protein 2
Probab=34.34 E-value=2.5e+02 Score=26.60 Aligned_cols=87 Identities=14% Similarity=0.255 Sum_probs=54.6
Q ss_pred ccCCCeEEEEEecCcccCcc--cc-ceEEEEeeCCcce-----eeEEEecccCCceeeeE-EEEecc-ceeeEEEEeCcc
Q 003457 706 LTEGSAYNLDFTLGDAKDAC--EG-MFVVRVQAGSLVQ-----NFTVQSLGTGSVIKHSV-TFKAGS-GSTPISFISYNI 775 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~~~--~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~f~a~~-~~~~~~f~~~~~ 775 (818)
.+||..|.+.|-+--+.+.+ .. +-.+.|.+++... .+.+...-..||-.... .|.... +..+|.|.=...
T Consensus 56 Lsp~t~Y~vy~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~ 135 (154)
T PF14299_consen 56 LSPGTTYAVYFVFKLKDDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEIELGEFFNEGGDDGEVEFSMYEV 135 (154)
T ss_pred cCCCCEEEEEEEEEecCCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEEEcceEEecCCCCcEEEEEEEEe
Confidence 57999999999876444433 22 4455556654322 33333344778998744 777666 566777765433
Q ss_pred c-ccCCCCccccccceeeeee
Q 003457 776 N-QTKDGVFCGPLIDDVVLRA 795 (818)
Q Consensus 776 ~-~~~~~~~~gp~~d~v~~~~ 795 (818)
. ..-- +|=+||-|.|+|
T Consensus 136 ~~~~wK---~GLiv~GieIRP 153 (154)
T PF14299_consen 136 DSGHWK---GGLIVEGIEIRP 153 (154)
T ss_pred cCCccc---CeEEEEEEEEec
Confidence 3 1223 888999999875
No 468
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=33.58 E-value=6e+02 Score=26.86 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cC-ChhHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 003457 197 ANEALMLFDQMLM-EGFEPNSVTLASVLSACAQ-SG-CLELGEKVHVFVKMR-GFEMGAILGTALVHMYTKNGALAKAKA 272 (818)
Q Consensus 197 ~~~A~~l~~~m~~-~g~~pd~~t~~~ll~~~~~-~g-~~~~A~~i~~~~~~~-g~~~~~~~~~~Li~~~~~~g~~~~A~~ 272 (818)
..+|+++|+..-. ..+--|......+++.... .+ ....-.++.+.+... +-.++..+...+++.+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4456666653211 2244566666666666654 11 222223333344332 346677778888999999999999999
Q ss_pred HHhhCCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 273 LFDSMPE-----RNIATWNAMISGLASHGHAEEALDLFRK 307 (818)
Q Consensus 273 ~f~~m~~-----~d~~~~~~Li~~~~~~g~~~~A~~l~~~ 307 (818)
+++.... .|...|..+|....+.|+..-...+..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 8887653 5888999999999999998765555543
No 469
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.46 E-value=6.8e+02 Score=27.46 Aligned_cols=58 Identities=10% Similarity=-0.063 Sum_probs=36.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHH
Q 003457 187 MISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACA-QSGCLELGEKVHVFVKM 244 (818)
Q Consensus 187 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~-~~g~~~~A~~i~~~~~~ 244 (818)
.+..+.+.|.+..|+++.+-+......-|......+|..|+ +.++++--.++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34566777888888888877777654436666666666664 45566555555555443
No 470
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.30 E-value=1e+02 Score=24.08 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=11.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q 003457 186 TMISGYAQSFRANEALMLFDQML 208 (818)
Q Consensus 186 ~Li~~~~~~g~~~~A~~l~~~m~ 208 (818)
.++.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555555543
No 471
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.97 E-value=2.7e+02 Score=25.46 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHh--cCCCCcchHHHHHHHHHHhhchHHHHHHHH
Q 003457 402 EVAERVVKEIIA--LEPNNHGVYVVLSNMYAEAESMKMQLEILL 443 (818)
Q Consensus 402 ~~A~~~~~~~~~--~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~ 443 (818)
++..++|+.|.+ ++-..+..|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345667777765 556667788888888888888888888765
No 472
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=32.88 E-value=27 Score=28.83 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=11.5
Q ss_pred cccceeeeeeccCc
Q 003457 786 PLIDDVVLRASHGF 799 (818)
Q Consensus 786 p~~d~v~~~~~~~~ 799 (818)
|-.|.|+|+++|.-
T Consensus 2 ptvdtvsvqplp~~ 15 (87)
T PF11980_consen 2 PTVDTVSVQPLPPY 15 (87)
T ss_pred CCcCccccCCCCce
Confidence 67899999998854
No 473
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.79 E-value=6.6e+02 Score=27.79 Aligned_cols=55 Identities=5% Similarity=-0.023 Sum_probs=32.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--hcCChhHHHHHHHHHHHc
Q 003457 190 GYAQSFRANEALMLFDQMLMEGFEPNSV--TLASVLSACA--QSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 190 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~~~~--~~g~~~~A~~i~~~~~~~ 245 (818)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344667777888887777765 455444 3333444443 244566777777766654
No 474
>PF11476 TgMIC1: Toxoplasma gondii micronemal protein 1 TgMIC1; InterPro: IPR024691 MIC1 is released as part of a complex by Toxoplasma gondii prior to invasion. The complex, which consists of MIC4-MIC1-MIC6, participates in host cell attachment and penetration, and is critical in invasion. This entry represents the C-terminal domain of MIC1, which has a galectin-like fold that interacts with and stabilises MIC6, providing a mechanism for an exit from the early secretory compartments and trafficking of the complex to micronemes [].; PDB: 2BVB_A 2K2S_A.
Probab=32.68 E-value=2.4e+02 Score=24.60 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=31.0
Q ss_pred ccCCCeEEEEEecCcccCccccceEEEEeeCCc--------ceeeEEEecccCCceeeeEEEEecc
Q 003457 706 LTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSL--------VQNFTVQSLGTGSVIKHSVTFKAGS 763 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~a~~ 763 (818)
...|+.-.|||+ +..|.|+||.- -.-+.|||..+++++...+.=.|.+
T Consensus 13 l~~gqql~~t~~----------s~~l~v~vgsch~l~~nf~d~~l~f~t~s~s~~d~ve~~~~ag~ 68 (137)
T PF11476_consen 13 LHEGQQLMVTFS----------SPQLHVSVGSCHSLTVNFSDYFLSFQTTSNSGFDEVEVDDPAGP 68 (137)
T ss_dssp E-CTEEEEEEEE-----------SCEEEEECTTEEEEEETTTTEEEEESSSSSS-EEEE---EEEE
T ss_pred HhcCceEEEEEe----------cceeeEEecchhheeehhccceEEeecCCCCccceEEeccCCCc
Confidence 578999999999 34577777762 2456778888998887766655544
No 475
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=32.56 E-value=94 Score=32.81 Aligned_cols=78 Identities=9% Similarity=0.077 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 349 IEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGA-LLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 349 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~-Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
+.-|+..|...+.-..+.|.+.+.-.+|.+. ...| |+..|-. -..-+...++++.+..+|.+.++++|+++..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 5567777777776666777777777777776 2334 4555543 22235678999999999999999999999888765
Q ss_pred H
Q 003457 426 S 426 (818)
Q Consensus 426 ~ 426 (818)
.
T Consensus 183 f 183 (435)
T COG5191 183 F 183 (435)
T ss_pred H
Confidence 4
No 476
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=32.45 E-value=5.8e+02 Score=26.34 Aligned_cols=68 Identities=16% Similarity=0.082 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 003457 354 EHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGV 421 (818)
Q Consensus 354 ~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~ 421 (818)
..+..+.+++...|++-++++.-.+. ...| |+..|-.-..+.+..=+.++|..-|.++++++|.-..+
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 34556667777888888888877766 2333 56777777777777778899999999999998874333
No 477
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.44 E-value=3.3e+02 Score=24.77 Aligned_cols=42 Identities=5% Similarity=0.015 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChHHHHHHHH
Q 003457 98 KAIFLYMNMRRTGFAPN-QHTFTFVLKACSNVRSLNCCKQIHT 139 (818)
Q Consensus 98 ~Al~lf~~m~~~g~~pd-~~ty~~ll~~~~~~g~~~~A~~~~~ 139 (818)
.+.++|+.|...|+--. +..|......+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554443322 2234444444444455555554444
No 478
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.08 E-value=1.6e+02 Score=34.62 Aligned_cols=60 Identities=10% Similarity=0.141 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 003457 114 NQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDE 175 (818)
Q Consensus 114 d~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~ 175 (818)
+...-..++..|.+.|-.+.+.++.+.+-..-.. ..-|..-+..+.++++.+....+-+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~--~~~~g~AL~~~~ra~d~~~v~~i~~~ 463 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLLK--EGRYGEALSWFIRAGDYSLVTRIADR 463 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444455555555555555555555544332111 12233444455555555544444333
No 479
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=31.89 E-value=7.7e+02 Score=30.14 Aligned_cols=33 Identities=15% Similarity=-0.032 Sum_probs=22.7
Q ss_pred HHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhc
Q 003457 39 IISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSI 75 (818)
Q Consensus 39 ~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~ 75 (818)
.+.|+..+......+.... .|++.+|+.++++.
T Consensus 192 ~~EgI~id~eAL~lIA~~A----~GsmRdALsLLdQA 224 (830)
T PRK07003 192 GEERIAFEPQALRLLARAA----QGSMRDALSLTDQA 224 (830)
T ss_pred HHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHH
Confidence 3457777777766666533 78888888887764
No 480
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.87 E-value=2.7e+02 Score=23.62 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=10.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 003457 325 SACCHAGFIDVGRQIFGSMKR 345 (818)
Q Consensus 325 ~a~~~~g~~~~A~~~~~~m~~ 345 (818)
......|+.++|.+.+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334445555555555555443
No 481
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=31.18 E-value=5.4e+02 Score=29.71 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCC
Q 003457 256 ALVHMYTKNGALAKAKALFDSMP 278 (818)
Q Consensus 256 ~Li~~~~~~g~~~~A~~~f~~m~ 278 (818)
.|+.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 46667888888888888888776
No 482
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.90 E-value=5.2e+02 Score=31.56 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=97.3
Q ss_pred HHHHHHHHHhCCC-------CChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 003457 32 KQIHAQMIISSRI-------QDHFAASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYM 104 (818)
Q Consensus 32 ~~~~~~~~~~g~~-------~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~ 104 (818)
+.+.+++.+.|+. -|..+- ..++ ..+|+++.|++.-.++ .+..+|..|.....+.|+.+-|...|+
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~tR---F~La--Le~gnle~ale~akkl--dd~d~w~rLge~Al~qgn~~IaEm~yQ 696 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDERTR---FELA--LECGNLEVALEAAKKL--DDKDVWERLGEEALRQGNHQIAEMCYQ 696 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcchh---eeee--hhcCCHHHHHHHHHhc--CcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 5677777777654 233222 2223 5778888888888777 455679999999999999999998888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHH
Q 003457 105 NMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVW 184 (818)
Q Consensus 105 ~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~ 184 (818)
+.+. |..|--.|.-.|+.++..++.+.+..++ |... ..... .-.|++++-.+++......+..-.
T Consensus 697 ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~-~~qna--lYl~dv~ervkIl~n~g~~~layl 761 (1202)
T KOG0292|consen 697 RTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATG-QFQNA--LYLGDVKERVKILENGGQLPLAYL 761 (1202)
T ss_pred Hhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH-HHHHH--HHhccHHHHHHHHHhcCcccHHHH
Confidence 7765 3334445666788887777665554332 2221 11122 236888888888877655443211
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc
Q 003457 185 TTMISGYAQSFRANEALMLFDQMLME 210 (818)
Q Consensus 185 ~~Li~~~~~~g~~~~A~~l~~~m~~~ 210 (818)
. ...+|.-++|.++.++...+
T Consensus 762 t-----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 762 T-----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred H-----HhhcCcHHHHHHHHHhhccc
Confidence 1 23457778888888887653
No 483
>cd08545 YcnI_like Reeler-like domain of YcnI and similar proteins. YcnI is a copper-responsive gene of Bacillus subtilis. It is homologous to an uncharacterized protein from Nocardia farcinica, which shares a conserved three-dimensional structure with cohesins and the reeler domain. Some members in this YcnI_like family have C-terminal domains (DUF461) that may bind copper.
Probab=30.77 E-value=72 Score=30.16 Aligned_cols=29 Identities=34% Similarity=0.603 Sum_probs=21.9
Q ss_pred ccCCCeEEEEEecCcccCccccc--eEEEEeeCC
Q 003457 706 LTEGSAYNLDFTLGDAKDACEGM--FVVRVQAGS 737 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~~~~~~--~~~~~~~~~ 737 (818)
..+|++|.+||. .+..|.+. ..|+|.++.
T Consensus 12 a~aGs~~~~tfr---VPhecdg~~Ttkv~V~lP~ 42 (152)
T cd08545 12 AAAGSYYKLTFR---VPHGCDGAATTKVRVKLPE 42 (152)
T ss_pred CCCCceEEEEEE---ccCCCCCCCceEEEEEcCC
Confidence 577999999999 66677654 466666665
No 484
>PRK14700 recombination factor protein RarA; Provisional
Probab=30.77 E-value=6.8e+02 Score=26.63 Aligned_cols=124 Identities=14% Similarity=0.110 Sum_probs=72.1
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhh---cCCHHHHHHH
Q 003457 111 FAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIR---NRTLNVWTTM 187 (818)
Q Consensus 111 ~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~---~~d~~~~~~L 187 (818)
+..+......++.. ..||...|+..++.+.......+.. . =..+...+++.+-. +++-..+..+
T Consensus 63 ~~i~~~al~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~~----~-------it~~~~~~~~~~~~~~yDk~gd~HYd~ 129 (300)
T PRK14700 63 FKIDDGLYNAMHNY--NEGDCRKILNLLERMFLISTRGDEI----Y-------LNKELFDQAVGETSRDFHREGKEFYEQ 129 (300)
T ss_pred CCcCHHHHHHHHHh--cCCHHHHHHHHHHHHHhhccccCCC----c-------cCHHHHHHHHhHHHhcccCCcchhHHH
Confidence 45566666666655 4678888888887755321010000 0 01222233332211 2334455666
Q ss_pred HHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHcCC
Q 003457 188 ISGYAQS---FRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGC-----LELGEKVHVFVKMRGF 247 (818)
Q Consensus 188 i~~~~~~---g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~-----~~~A~~i~~~~~~~g~ 247 (818)
++++.++ .+.|.|+-++-+|++.|-.|....-..++-++...|. ...|...++.....|+
T Consensus 130 iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~ 197 (300)
T PRK14700 130 LSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGM 197 (300)
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 7777664 6899999999999999977777766666666666653 3344445555555554
No 485
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.45 E-value=2e+02 Score=25.39 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003457 183 VWTTMISGYAQSFRANEALMLFDQMLM 209 (818)
Q Consensus 183 ~~~~Li~~~~~~g~~~~A~~l~~~m~~ 209 (818)
-|..|+..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888888765
No 486
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.28 E-value=2.9e+02 Score=23.44 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHH
Q 003457 264 NGALAKAKALFDSMPERNIATWNAMISGLASHGHAE 299 (818)
Q Consensus 264 ~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~ 299 (818)
.|+.+.|.++++.+. +.+..|..++.++.+.|..+
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 355555555555555 45555555555555555443
No 487
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=30.12 E-value=4.7e+02 Score=27.84 Aligned_cols=88 Identities=7% Similarity=0.080 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHH----------HHcCChHHHHHHH
Q 003457 135 KQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGY----------AQSFRANEALMLF 204 (818)
Q Consensus 135 ~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~----------~~~g~~~~A~~l~ 204 (818)
.++++.+.+.++.|.-..+.-+.-.+.+.=.+.+.+.+++.+... ..-+..|+..| .-.|++...++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 466777777777777777776666777777778888888777642 11133333333 3357777777766
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHH
Q 003457 205 DQMLMEGFEPNSVTLASVLSACA 227 (818)
Q Consensus 205 ~~m~~~g~~pd~~t~~~ll~~~~ 227 (818)
+.- ...|..+...+...+.
T Consensus 342 Q~y----p~tdi~~~l~~A~~Lr 360 (370)
T KOG4567|consen 342 QNY----PTTDISKMLAVADSLR 360 (370)
T ss_pred hcC----CCCCHHHHHHHHHHHH
Confidence 542 2334444444444443
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.99 E-value=4.7e+02 Score=25.67 Aligned_cols=47 Identities=23% Similarity=0.453 Sum_probs=28.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 393 AACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 393 ~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
-.|.+.|.+++|.+++++..+ +|++...-.-|..+-.+...+..-++
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 356677777777777777766 66655554445544444444444444
No 489
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=29.72 E-value=8.9e+02 Score=27.69 Aligned_cols=234 Identities=11% Similarity=0.038 Sum_probs=116.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------ChhHHHHHHHHHHHcC-C-CCcHHHHHHHHHHHHhCCCH-HHH
Q 003457 200 ALMLFDQMLMEGFEPNSVTLASVLSACAQSG------CLELGEKVHVFVKMRG-F-EMGAILGTALVHMYTKNGAL-AKA 270 (818)
Q Consensus 200 A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g------~~~~A~~i~~~~~~~g-~-~~~~~~~~~Li~~~~~~g~~-~~A 270 (818)
..++|++..+. -|+...+...|..|...- .+.....+++...+.+ . +.....|..+.-.+++...- +-|
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 33455555442 344445555555553321 2233333444444332 1 22344555555555555443 334
Q ss_pred HHHHhhCCCCChhhHHHHHHHHHHc-CCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHH--HHHHHHHHH
Q 003457 271 KALFDSMPERNIATWNAMISGLASH-GHAEE-ALDLFRKLEKEQIVPNDITFVGVLSACCHAGF-IDVG--RQIFGSMKR 345 (818)
Q Consensus 271 ~~~f~~m~~~d~~~~~~Li~~~~~~-g~~~~-A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~A--~~~~~~m~~ 345 (818)
..+-.+....+...|..-++..... .+++- -..++..++..-..+-...++... .++ .... ..++..+..
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s 453 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS 453 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence 4444455555666665555544422 12221 122223333221112222222222 122 2111 122333333
Q ss_pred HhCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 346 VYGIEPKIE-HYGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAACK--NHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 346 ~~g~~p~~~-~~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~--~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
. ..++.. .-+.+++-+.+.|-.++|.+.|.++. ..|+...|..++..-. ..-+...+..+|+.|..-.-.+++
T Consensus 454 ~--~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 454 V--IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSD 531 (568)
T ss_pred h--cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChH
Confidence 2 334433 34567777788888899999988883 2346777777776422 222477778888888765446677
Q ss_pred hHHHHHHHHHHhhchHHHHHHH
Q 003457 421 VYVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 421 ~y~~L~~~l~~~G~~~eA~~l~ 442 (818)
.|......-...|+-+.+-.++
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~ 553 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIY 553 (568)
T ss_pred HHHHHHHhhccCCCcccccHHH
Confidence 8877766666777777776643
No 490
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=29.37 E-value=3e+02 Score=25.16 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003457 300 EALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMV 360 (818)
Q Consensus 300 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li 360 (818)
+..+-++.+....+.|++...-..+++|.+.+|+..|.++|+.++.+ ..+.-..|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34455566666677888888888889999999999999999887765 333333454444
No 491
>TIGR02148 Fibro_Slime fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain
Probab=29.29 E-value=1.2e+02 Score=25.72 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=27.5
Q ss_pred eeccCCCeeEEecC-----Cccce-eeeeccccCCCeEEEEEec
Q 003457 681 FYVPKGNAAIEIVS-----VSAGI-QTATTMLTEGSAYNLDFTL 718 (818)
Q Consensus 681 ~~~~~g~~~~~l~~-----~~~~~-q~~~~~~~~g~~y~~tf~~ 718 (818)
|+-=.|+-+|+||| .+++. .++. .++|+.|.+.|-.
T Consensus 31 WVFIn~kLv~DlGG~H~~~~~sV~l~~lg--l~~g~~Y~~d~F~ 72 (90)
T TIGR02148 31 WVFINNKLVVDIGGQHPAVPGAVDLDTLG--LKEGKTYPFDIFY 72 (90)
T ss_pred EEEECCEEEEEccCcCCCcccEEEhhhcC--CccCcEeeEEEEE
Confidence 66668999999987 23333 5565 7899999999974
No 492
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=29.12 E-value=3.3e+02 Score=24.25 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 403 VAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 403 ~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
.+.+.|.+...+.|+.+..+..|++-+...--|+++.+
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~ 99 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVK 99 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45677788888888876667777766666666666665
No 493
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=28.92 E-value=4.5e+02 Score=23.92 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-------HHHHc-CCCCC-HHHHHHH----HHHHHHcCCHHHHHHHHHHHHh
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEE-------LIKRM-VWKPD-VVMWGAL----LAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~-------~~~~m-~~~pd-~~~~~~L----i~a~~~~g~~~~A~~~~~~~~~ 413 (818)
..++..|..++...|++++++. +|++= ....| -..|-.. ..++...|+.++|+..|+.+-+
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3455566666777777666543 34333 13333 2334332 2356678899999988876543
No 494
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.54 E-value=1.6e+02 Score=30.26 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHcCCHHHH
Q 003457 333 IDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--------WKPDVVMWGALLAACKNHGNIEVA 404 (818)
Q Consensus 333 ~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--------~~pd~~~~~~Li~a~~~~g~~~~A 404 (818)
++.|...|...... ..-....-.+...|.+.|++++|.++|+.+. ..+...+...+..++.+.|+.+..
T Consensus 161 L~~A~~~f~~~~~~---R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~ 237 (247)
T PF11817_consen 161 LEKAYEQFKKYGQN---RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDY 237 (247)
T ss_pred HHHHHHHHHHhccc---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHH
Q ss_pred HHHHHHHHhc
Q 003457 405 ERVVKEIIAL 414 (818)
Q Consensus 405 ~~~~~~~~~~ 414 (818)
+.+.-+++..
T Consensus 238 l~~~leLls~ 247 (247)
T PF11817_consen 238 LTTSLELLSR 247 (247)
T ss_pred HHHHHHHhcC
No 495
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=28.19 E-value=1.4e+02 Score=30.99 Aligned_cols=51 Identities=25% Similarity=0.229 Sum_probs=34.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHH
Q 003457 391 LLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 391 Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l 441 (818)
+-.++.+.++++.|..+.++.+.++|+++....--+-+|.+.|.+.-|++-
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~d 237 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALED 237 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHH
Confidence 334566667777777777777777777776666667777777777766663
No 496
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=28.14 E-value=3.8e+02 Score=31.47 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHH
Q 003457 296 GHAEEALDLFRKLEKEQIVPNDIT 319 (818)
Q Consensus 296 g~~~~A~~l~~~m~~~g~~pd~~t 319 (818)
+++.+|.+.+-.+.+....|...-
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~ 532 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFW 532 (566)
T ss_dssp ------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHH
Confidence 555555555555555444444433
No 497
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=28.07 E-value=6.3e+02 Score=26.73 Aligned_cols=164 Identities=9% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh
Q 003457 52 RLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSL 131 (818)
Q Consensus 52 ~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~ 131 (818)
.++..+ .+..++....+.++.+ .....-...++.+...|++..|++++.+..+ -...+..+-..-.-..++
T Consensus 103 ~Il~~~--rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~-----~l~~l~~~~c~~~L~~~L 173 (291)
T PF10475_consen 103 EILRLQ--RKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEECQQ-----LLEELKGYSCVRHLSSQL 173 (291)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----HHHhcccchHHHHHhHHH
Q ss_pred HHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHH-HHHHHHHHHHHc---CChHHHHH
Q 003457 132 NCCKQIHTHVSKSG-----LDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLN-VWTTMISGYAQS---FRANEALM 202 (818)
Q Consensus 132 ~~A~~~~~~m~~~g-----~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~-~~~~Li~~~~~~---g~~~~A~~ 202 (818)
++.......+++.. ..-|+..|..+..+|.-.|+...+.+-+...-...+. +-..++..+... ........
T Consensus 174 ~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~vv~~~~~~~~~~~~~~~~~ 253 (291)
T PF10475_consen 174 QETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFSVVRSYVEQSESSEERSSKM 253 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccC
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHH
Q 003457 203 LFDQMLMEGFEPNSVTLASVLSAC 226 (818)
Q Consensus 203 l~~~m~~~g~~pd~~t~~~ll~~~ 226 (818)
-|+.+... -|.......+...|
T Consensus 254 ~y~~lC~~--v~~~~~~~cl~~l~ 275 (291)
T PF10475_consen 254 SYKDLCKQ--VPSDQFIPCLLELL 275 (291)
T ss_pred CHHHHHhh--CCHHHHHHHHHHHH
No 498
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=28.04 E-value=58 Score=20.64 Aligned_cols=14 Identities=14% Similarity=-0.123 Sum_probs=9.5
Q ss_pred ccCccchhHHHHHH
Q 003457 796 SHGFKLQLRLEILI 809 (818)
Q Consensus 796 ~~~~~~~~~~~~~~ 809 (818)
+|||.+..++++++
T Consensus 1 VPEPstl~ll~~g~ 14 (26)
T TIGR02595 1 VPEPSTLLLLLLGL 14 (26)
T ss_pred CCCchHHHHHHHHH
Confidence 46777777766666
No 499
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.82 E-value=3.5e+02 Score=26.55 Aligned_cols=32 Identities=25% Similarity=0.316 Sum_probs=17.4
Q ss_pred HHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHH
Q 003457 361 DLLGRCGKVLEAEELIKRMVWKPDVVMWGALL 392 (818)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li 392 (818)
-.|.+.|.+++|.+++++.-..|+.......+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL 150 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFSDPESQKLRMKL 150 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhcCCCchhHHHHH
Confidence 34566666666666666664344444333333
No 500
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.76 E-value=1.4e+03 Score=29.21 Aligned_cols=161 Identities=10% Similarity=-0.022 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHH-----------------------HHcCCCCCHHH-----HHHHHHHHHccCChHHHHH
Q 003457 85 TLIRAQASSLNPDKAIFLYMNM-----------------------RRTGFAPNQHT-----FTFVLKACSNVRSLNCCKQ 136 (818)
Q Consensus 85 ~Li~~~~~~g~~~~Al~lf~~m-----------------------~~~g~~pd~~t-----y~~ll~~~~~~g~~~~A~~ 136 (818)
.+..+|...|...+|+.+|.+. ...|-.|...- |..+++.+-+.+..+.+.+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQ 1004 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQ 1004 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHH
Q ss_pred HHHHHHHcCCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHhhcC--CHHHHHHHHHHHHHcCChH------------H
Q 003457 137 IHTHVSKSGLDLDLH---VVNCLVRCYSVSSDLNNARQVFDEIRNR--TLNVWTTMISGYAQSFRAN------------E 199 (818)
Q Consensus 137 ~~~~m~~~g~~p~~~---~~~~Li~~y~~~g~~~~A~~l~~~m~~~--d~~~~~~Li~~~~~~g~~~------------~ 199 (818)
+-..+++.-...+.. +++.+.+.....|.+.+|.+.+-+.... .......++..++++|+++ +
T Consensus 1005 lA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~e 1084 (1480)
T KOG4521|consen 1005 LAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQE 1084 (1480)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHH
Q ss_pred HHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003457 200 ALM-LFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 200 A~~-l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~ 245 (818)
... +++..-..........|..|-.-+...+++.+|-.+.-+.-.+
T Consensus 1085 ve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1085 VEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Done!