Query 003457
Match_columns 818
No_of_seqs 817 out of 3903
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 01:52:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.9E-36 1.3E-40 352.6 39.0 441 13-485 82-594 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-31 5.5E-36 313.4 42.2 410 11-430 113-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 5.8E-26 2E-30 251.4 44.8 368 60-434 10-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-26 7.8E-31 254.7 41.5 369 86-483 5-381 (388)
5 2gw1_A Mitochondrial precursor 99.9 7.9E-23 2.7E-27 234.1 34.9 388 50-446 9-476 (514)
6 4g26_A Pentatricopeptide repea 99.9 2E-23 6.8E-28 238.1 24.6 183 81-263 27-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.7E-21 5.6E-26 223.0 39.3 393 25-426 19-490 (514)
8 4g26_A Pentatricopeptide repea 99.9 8.8E-24 3E-28 241.0 20.2 210 98-329 8-222 (501)
9 2y4t_A DNAJ homolog subfamily 99.9 8.9E-21 3.1E-25 213.5 40.7 334 79-419 25-415 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 1.9E-20 6.5E-25 210.8 38.5 325 99-431 11-375 (450)
11 3fp2_A TPR repeat-containing p 99.9 8.8E-21 3E-25 218.6 35.6 385 48-446 26-489 (537)
12 3fp2_A TPR repeat-containing p 99.9 3.6E-19 1.2E-23 205.1 37.4 387 25-423 38-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 4.3E-19 1.5E-23 192.3 35.0 311 114-431 2-352 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 2.2E-18 7.6E-23 186.6 40.3 292 81-379 4-332 (359)
15 2xm6_A Protein corresponding t 99.8 8.5E-17 2.9E-21 184.0 46.7 367 45-432 37-453 (490)
16 3hym_B Cell division cycle pro 99.8 2.8E-18 9.4E-23 183.9 26.8 278 149-429 21-314 (330)
17 3hym_B Cell division cycle pro 99.8 4.3E-18 1.5E-22 182.4 28.2 261 180-445 21-296 (330)
18 2xm6_A Protein corresponding t 99.8 1.8E-15 6.1E-20 172.9 48.2 357 69-446 27-430 (490)
19 1fch_A Peroxisomal targeting s 99.8 1.8E-17 6.1E-22 181.0 26.2 257 183-444 66-355 (368)
20 4g1t_A Interferon-induced prot 99.8 1.3E-15 4.3E-20 172.6 38.8 365 80-481 51-470 (472)
21 4eqf_A PEX5-related protein; a 99.8 2.2E-17 7.7E-22 180.5 22.9 258 182-443 66-351 (365)
22 2ooe_A Cleavage stimulation fa 99.7 7E-15 2.4E-19 169.7 40.8 392 45-446 11-490 (530)
23 3cv0_A Peroxisome targeting si 99.7 3.3E-16 1.1E-20 167.4 26.4 270 153-445 24-312 (327)
24 1fch_A Peroxisomal targeting s 99.7 2.6E-16 8.9E-21 171.7 24.3 296 93-413 38-358 (368)
25 1b89_A Protein (clathrin heavy 99.7 9.1E-17 3.1E-21 175.5 19.5 287 60-379 14-308 (449)
26 3mkr_A Coatomer subunit epsilo 99.7 6E-15 2E-19 156.5 32.9 269 158-440 7-286 (291)
27 3mkr_A Coatomer subunit epsilo 99.7 5.4E-16 1.8E-20 164.5 22.4 244 188-446 6-262 (291)
28 4g1t_A Interferon-induced prot 99.7 1E-14 3.5E-19 165.0 33.2 365 45-426 49-471 (472)
29 1xi4_A Clathrin heavy chain; a 99.7 1.9E-13 6.4E-18 164.9 43.4 344 51-443 989-1340(1630)
30 4eqf_A PEX5-related protein; a 99.7 1.3E-15 4.4E-20 166.4 22.8 255 153-411 68-353 (365)
31 2ooe_A Cleavage stimulation fa 99.7 2.1E-13 7.1E-18 157.4 41.7 399 12-417 10-495 (530)
32 3cv0_A Peroxisome targeting si 99.7 1.9E-15 6.6E-20 161.3 22.6 276 114-416 20-317 (327)
33 1b89_A Protein (clathrin heavy 99.7 1.4E-16 4.7E-21 174.1 11.3 250 162-442 15-266 (449)
34 1xi4_A Clathrin heavy chain; a 99.7 6.9E-13 2.4E-17 160.0 43.1 365 28-440 1001-1376(1630)
35 3uq3_A Heat shock protein STI1 99.6 9.7E-15 3.3E-19 150.1 19.8 225 183-445 7-233 (258)
36 3uq3_A Heat shock protein STI1 99.6 2.6E-14 9E-19 146.8 22.4 235 150-427 5-255 (258)
37 2pl2_A Hypothetical conserved 99.6 2.2E-14 7.6E-19 145.0 20.9 195 248-445 2-211 (217)
38 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.3E-13 4.5E-18 143.3 23.9 240 194-442 18-269 (275)
39 3u4t_A TPR repeat-containing p 99.6 9.2E-14 3.1E-18 144.5 22.3 245 154-433 7-269 (272)
40 3e4b_A ALGK; tetratricopeptide 99.6 9.4E-14 3.2E-18 156.9 22.0 368 60-446 14-419 (452)
41 2h6f_A Protein farnesyltransfe 99.6 2.2E-13 7.6E-18 149.7 24.0 246 182-432 98-366 (382)
42 2q7f_A YRRB protein; TPR, prot 99.6 5.5E-14 1.9E-18 143.3 16.8 192 252-446 24-220 (243)
43 3u4t_A TPR repeat-containing p 99.5 1.1E-13 3.7E-18 143.9 18.3 240 219-484 6-264 (272)
44 2h6f_A Protein farnesyltransfe 99.5 2.2E-13 7.4E-18 149.8 21.0 225 216-445 97-344 (382)
45 2vq2_A PILW, putative fimbrial 99.5 2.7E-13 9.3E-18 136.0 20.1 193 251-445 8-208 (225)
46 1ouv_A Conserved hypothetical 99.5 2.6E-12 9E-17 134.1 27.8 225 180-417 5-254 (273)
47 3vtx_A MAMA; tetratricopeptide 99.5 3.8E-13 1.3E-17 131.4 19.8 163 281-446 4-168 (184)
48 2ho1_A Type 4 fimbrial biogene 99.5 2.6E-13 9E-18 139.4 19.4 200 217-419 38-243 (252)
49 1ouv_A Conserved hypothetical 99.5 1.3E-12 4.6E-17 136.3 25.0 220 215-446 5-249 (273)
50 2q7f_A YRRB protein; TPR, prot 99.5 2.4E-13 8.3E-18 138.5 18.7 210 220-433 27-241 (243)
51 2ho1_A Type 4 fimbrial biogene 99.5 2.6E-12 8.9E-17 131.9 26.4 192 183-379 39-235 (252)
52 4a1s_A PINS, partner of inscut 99.5 5.5E-13 1.9E-17 147.7 20.9 259 187-446 54-370 (411)
53 2pl2_A Hypothetical conserved 99.5 1.2E-12 4.3E-17 132.0 21.4 191 182-378 6-210 (217)
54 3sf4_A G-protein-signaling mod 99.5 6.1E-13 2.1E-17 146.5 20.4 300 112-439 6-367 (406)
55 3sf4_A G-protein-signaling mod 99.5 2.2E-12 7.4E-17 142.0 24.0 261 184-445 12-333 (406)
56 2vq2_A PILW, putative fimbrial 99.5 6.5E-12 2.2E-16 125.8 25.4 202 221-425 13-222 (225)
57 3ro2_A PINS homolog, G-protein 99.5 2.6E-12 9E-17 136.7 23.4 260 186-446 10-330 (338)
58 3e4b_A ALGK; tetratricopeptide 99.5 9.6E-13 3.3E-17 148.6 20.9 339 85-445 8-384 (452)
59 1xnf_A Lipoprotein NLPI; TPR, 99.5 5.5E-12 1.9E-16 131.0 22.5 240 92-340 17-269 (275)
60 4abn_A Tetratricopeptide repea 99.4 2E-12 7E-17 146.8 20.1 205 233-442 85-315 (474)
61 3spa_A Mtrpol, DNA-directed RN 99.4 9.5E-14 3.3E-18 162.8 8.5 125 46-172 126-258 (1134)
62 4a1s_A PINS, partner of inscut 99.4 3.1E-12 1.1E-16 141.6 19.8 272 117-417 50-375 (411)
63 3spa_A Mtrpol, DNA-directed RN 99.4 2E-13 6.9E-18 160.1 10.4 159 149-307 126-306 (1134)
64 3ulq_A Response regulator aspa 99.4 3.7E-11 1.3E-15 132.2 24.9 228 186-413 108-367 (383)
65 3ro2_A PINS homolog, G-protein 99.4 1.6E-11 5.4E-16 130.7 20.5 134 284-417 185-335 (338)
66 3vtx_A MAMA; tetratricopeptide 99.4 2.5E-11 8.4E-16 118.4 19.8 167 250-419 4-175 (184)
67 2ond_A Cleavage stimulation fa 99.4 2E-10 6.8E-15 122.4 28.0 220 198-421 33-277 (308)
68 3ulq_A Response regulator aspa 99.3 1.7E-11 5.7E-16 134.9 19.0 223 222-445 109-365 (383)
69 4gyw_A UDP-N-acetylglucosamine 99.3 2.6E-11 8.8E-16 143.8 21.5 163 281-446 8-172 (723)
70 4i17_A Hypothetical protein; T 99.3 2E-11 6.8E-16 123.6 17.8 179 281-483 6-222 (228)
71 3as5_A MAMA; tetratricopeptide 99.3 2.9E-11 1E-15 116.8 18.2 159 284-445 10-170 (186)
72 2ond_A Cleavage stimulation fa 99.3 1.5E-10 5.1E-15 123.4 23.3 209 233-446 33-268 (308)
73 3nf1_A KLC 1, kinesin light ch 99.3 3.1E-12 1.1E-16 135.2 10.1 233 182-445 28-304 (311)
74 4e6h_A MRNA 3'-END-processing 99.3 1.1E-08 3.9E-13 119.8 40.1 79 45-125 64-149 (679)
75 3nf1_A KLC 1, kinesin light ch 99.3 1.2E-11 4.1E-16 130.7 12.6 239 149-417 26-310 (311)
76 1hz4_A MALT regulatory protein 99.3 2.7E-09 9.1E-14 116.5 31.8 257 189-445 22-319 (373)
77 3q15_A PSP28, response regulat 99.3 9.2E-10 3.2E-14 120.8 27.6 160 185-345 105-289 (378)
78 4abn_A Tetratricopeptide repea 99.3 1.5E-10 5.2E-15 131.3 20.6 209 197-410 84-317 (474)
79 3q15_A PSP28, response regulat 99.3 1.5E-10 5.1E-15 127.1 19.6 225 221-446 106-363 (378)
80 4e6h_A MRNA 3'-END-processing 99.3 6.1E-09 2.1E-13 122.1 34.3 401 11-418 62-574 (679)
81 3as5_A MAMA; tetratricopeptide 99.2 7.7E-10 2.6E-14 106.6 21.9 168 251-421 8-180 (186)
82 4i17_A Hypothetical protein; T 99.2 4.1E-10 1.4E-14 113.8 20.7 206 213-429 4-224 (228)
83 4gyw_A UDP-N-acetylglucosamine 99.1 3.4E-10 1.2E-14 134.1 16.9 166 249-417 7-177 (723)
84 1hz4_A MALT regulatory protein 99.1 2.6E-08 8.9E-13 108.6 30.5 223 87-309 21-280 (373)
85 3qky_A Outer membrane assembly 99.1 3.9E-09 1.4E-13 109.1 19.8 180 250-446 14-222 (261)
86 3qky_A Outer membrane assembly 99.1 3.2E-09 1.1E-13 109.8 19.1 206 213-439 12-252 (261)
87 3mv2_B Coatomer subunit epsilo 99.1 1.3E-08 4.6E-13 106.5 22.4 234 191-446 23-280 (310)
88 1qqe_A Vesicular transport pro 99.0 2.8E-09 9.5E-14 112.6 17.0 221 165-422 32-277 (292)
89 3edt_B KLC 2, kinesin light ch 99.0 2.1E-09 7.1E-14 111.3 14.5 219 227-445 12-278 (283)
90 2yhc_A BAMD, UPF0169 lipoprote 99.0 1.9E-08 6.7E-13 101.5 20.5 176 253-446 6-211 (225)
91 1qqe_A Vesicular transport pro 99.0 3.3E-09 1.1E-13 112.0 15.0 200 231-445 32-266 (292)
92 3edt_B KLC 2, kinesin light ch 99.0 8.8E-09 3E-13 106.5 17.8 226 162-415 13-282 (283)
93 2pzi_A Probable serine/threoni 99.0 2.3E-09 8E-14 127.2 15.0 169 262-434 402-583 (681)
94 2fo7_A Synthetic consensus TPR 99.0 1.1E-08 3.8E-13 92.5 16.1 120 324-445 8-129 (136)
95 3urz_A Uncharacterized protein 99.0 1.9E-08 6.5E-13 100.3 19.1 180 218-417 6-189 (208)
96 4ga2_A E3 SUMO-protein ligase 99.0 8.9E-11 3E-15 110.9 1.6 139 291-433 6-148 (150)
97 4ga2_A E3 SUMO-protein ligase 99.0 7.3E-10 2.5E-14 104.5 7.9 113 325-440 5-120 (150)
98 2vsy_A XCC0866; transferase, g 99.0 5.2E-09 1.8E-13 121.6 16.0 160 264-426 2-169 (568)
99 3qou_A Protein YBBN; thioredox 99.0 1.5E-08 5.1E-13 106.7 17.9 174 268-445 103-281 (287)
100 2fo7_A Synthetic consensus TPR 98.9 3.6E-08 1.2E-12 89.0 18.0 132 283-417 2-135 (136)
101 2pzi_A Probable serine/threoni 98.9 4.3E-08 1.5E-12 116.3 20.6 191 227-422 402-610 (681)
102 3mv2_B Coatomer subunit epsilo 98.9 1.7E-07 5.9E-12 98.1 22.6 240 160-421 23-289 (310)
103 4gco_A Protein STI-1; structur 98.9 5E-09 1.7E-13 95.5 8.9 91 355-445 15-107 (126)
104 3urz_A Uncharacterized protein 98.9 4E-08 1.4E-12 98.0 16.2 158 285-446 7-184 (208)
105 2zex_A S-layer associated mult 98.9 1.4E-08 4.9E-13 95.1 12.0 137 628-796 4-147 (147)
106 2ifu_A Gamma-SNAP; membrane fu 98.8 6.2E-08 2.1E-12 103.0 17.9 178 260-440 45-253 (307)
107 2vsy_A XCC0866; transferase, g 98.8 6.1E-08 2.1E-12 112.5 19.3 148 295-445 2-154 (568)
108 3rjv_A Putative SEL1 repeat pr 98.8 1.3E-07 4.4E-12 94.6 18.3 167 270-445 5-194 (212)
109 2ifu_A Gamma-SNAP; membrane fu 98.8 2.8E-08 9.7E-13 105.6 14.3 195 229-445 4-221 (307)
110 2r5s_A Uncharacterized protein 98.8 2.8E-08 9.7E-13 96.1 12.7 154 288-445 12-170 (176)
111 2uy1_A Cleavage stimulation fa 98.8 8.7E-06 3E-10 92.3 34.9 352 47-413 15-412 (493)
112 3dra_A Protein farnesyltransfe 98.8 3.5E-07 1.2E-11 96.6 21.5 222 197-423 49-297 (306)
113 4gco_A Protein STI-1; structur 98.8 8.8E-08 3E-12 87.2 14.8 110 318-429 14-125 (126)
114 3dra_A Protein farnesyltransfe 98.8 1.5E-06 5.2E-11 91.6 25.5 210 232-445 49-284 (306)
115 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.4E-07 4.7E-12 95.2 16.4 187 215-422 3-221 (225)
116 2r5s_A Uncharacterized protein 98.8 1.5E-07 5.1E-12 90.9 15.9 156 254-413 9-172 (176)
117 3gyz_A Chaperone protein IPGC; 98.7 3.2E-08 1.1E-12 93.3 10.4 94 353-446 36-131 (151)
118 2vgx_A Chaperone SYCD; alterna 98.7 1.6E-08 5.5E-13 95.0 7.6 93 353-445 21-115 (148)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.3E-07 1.1E-11 90.9 17.6 123 319-446 8-148 (213)
120 3qou_A Protein YBBN; thioredox 98.7 4.7E-07 1.6E-11 95.1 19.4 162 215-378 116-280 (287)
121 1a17_A Serine/threonine protei 98.7 9.5E-07 3.3E-11 83.3 19.1 126 318-445 14-143 (166)
122 1hh8_A P67PHOX, NCF-2, neutrop 98.7 7.8E-07 2.7E-11 88.1 18.8 126 287-418 11-154 (213)
123 3rjv_A Putative SEL1 repeat pr 98.7 1.5E-06 5E-11 86.8 20.5 169 169-346 5-197 (212)
124 1na0_A Designed protein CTPR3; 98.7 6.2E-07 2.1E-11 79.7 15.8 115 317-433 9-125 (125)
125 2vyi_A SGTA protein; chaperone 98.6 5.2E-07 1.8E-11 80.9 14.8 117 317-435 12-130 (131)
126 3u3w_A Transcriptional activat 98.6 3.6E-06 1.2E-10 88.4 23.4 160 287-446 80-264 (293)
127 1p5q_A FKBP52, FK506-binding p 98.6 5.4E-07 1.8E-11 97.0 16.9 127 318-446 148-292 (336)
128 2lni_A Stress-induced-phosphop 98.6 4.2E-07 1.4E-11 82.1 13.3 117 316-434 15-133 (133)
129 1hxi_A PEX5, peroxisome target 98.6 3.1E-07 1.1E-11 82.8 12.1 91 356-446 20-112 (121)
130 2e2e_A Formate-dependent nitri 98.6 1.2E-07 4.1E-12 91.4 10.0 128 292-422 20-152 (177)
131 2qfc_A PLCR protein; TPR, HTH, 98.6 1.1E-06 3.8E-11 92.4 18.1 162 284-445 77-263 (293)
132 2xcb_A PCRH, regulatory protei 98.6 1.8E-07 6E-12 86.9 10.3 87 357-443 22-110 (142)
133 2c2l_A CHIP, carboxy terminus 98.6 1.7E-07 5.7E-12 98.3 10.8 185 252-445 5-196 (281)
134 3sz7_A HSC70 cochaperone (SGT) 98.6 1.9E-07 6.3E-12 88.9 10.2 108 317-426 11-120 (164)
135 2vgx_A Chaperone SYCD; alterna 98.5 3.9E-07 1.3E-11 85.4 11.4 107 317-425 21-129 (148)
136 2fbn_A 70 kDa peptidylprolyl i 98.5 1.3E-07 4.6E-12 93.1 8.5 92 354-445 89-183 (198)
137 1gu3_A Endoglucanase C; carboh 98.5 9.4E-07 3.2E-11 82.2 13.2 126 630-794 2-147 (149)
138 1gui_A Laminarinase 16A; carbo 98.5 1.3E-06 4.4E-11 82.6 14.5 101 682-795 41-154 (155)
139 3upv_A Heat shock protein STI1 98.5 1.9E-07 6.6E-12 84.3 7.8 89 356-444 7-97 (126)
140 3u3w_A Transcriptional activat 98.5 1.4E-05 4.8E-10 83.8 23.3 158 257-414 81-266 (293)
141 2dba_A Smooth muscle cell asso 98.5 4.9E-07 1.7E-11 83.5 10.4 93 353-445 28-125 (148)
142 2uy1_A Cleavage stimulation fa 98.5 1.2E-05 4.2E-10 91.1 24.0 104 61-178 6-117 (493)
143 2zez_A Family 16 CBM-2, S-laye 98.5 1E-06 3.5E-11 81.2 12.1 131 629-796 2-144 (144)
144 1elw_A TPR1-domain of HOP; HOP 98.5 6E-07 2.1E-11 78.9 10.3 109 318-428 5-115 (118)
145 4f3v_A ESX-1 secretion system 98.5 4E-07 1.4E-11 94.1 10.1 121 323-446 108-235 (282)
146 2e2e_A Formate-dependent nitri 98.5 2.2E-06 7.5E-11 82.4 14.9 115 329-445 22-141 (177)
147 3sz7_A HSC70 cochaperone (SGT) 98.5 2.9E-06 9.9E-11 80.5 15.4 94 352-445 10-105 (164)
148 2hr2_A Hypothetical protein; a 98.4 3.8E-07 1.3E-11 85.5 8.4 61 386-446 58-129 (159)
149 3q7a_A Farnesyltransferase alp 98.4 6.2E-05 2.1E-09 80.3 26.7 229 193-426 66-344 (349)
150 2xcb_A PCRH, regulatory protei 98.4 2.8E-06 9.4E-11 78.6 14.4 112 318-431 19-132 (142)
151 4f3v_A ESX-1 secretion system 98.4 2.3E-06 7.8E-11 88.4 15.0 136 286-426 106-248 (282)
152 2lni_A Stress-induced-phosphop 98.4 4.1E-07 1.4E-11 82.2 8.5 97 350-446 13-111 (133)
153 1elw_A TPR1-domain of HOP; HOP 98.4 3.9E-06 1.3E-10 73.5 14.7 93 284-379 6-98 (118)
154 3gyz_A Chaperone protein IPGC; 98.4 2.6E-06 8.9E-11 80.1 14.1 99 318-418 37-137 (151)
155 3upv_A Heat shock protein STI1 98.4 2.9E-06 9.8E-11 76.4 14.0 111 318-430 5-123 (126)
156 1cx1_A Endoglucanase C; cellul 98.4 2.2E-06 7.7E-11 80.7 13.4 81 701-794 57-149 (153)
157 1na0_A Designed protein CTPR3; 98.4 7.7E-07 2.6E-11 79.0 9.8 94 353-446 9-104 (125)
158 3gw4_A Uncharacterized protein 98.4 4.8E-06 1.6E-10 81.4 16.2 150 264-413 5-175 (203)
159 1wao_1 Serine/threonine protei 98.4 1.7E-06 5.7E-11 97.9 14.3 144 324-480 13-160 (477)
160 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3E-06 1E-10 95.3 16.3 127 319-445 270-412 (457)
161 2xom_A Arabinogalactan endo-1, 98.4 3.8E-06 1.3E-10 78.5 14.2 133 628-796 7-151 (152)
162 3q49_B STIP1 homology and U bo 98.4 1.4E-06 4.6E-11 79.6 11.0 100 316-417 8-109 (137)
163 1a17_A Serine/threonine protei 98.4 1.1E-05 3.9E-10 75.7 17.2 129 282-413 13-145 (166)
164 2kck_A TPR repeat; tetratricop 98.4 1E-06 3.5E-11 76.7 9.1 94 352-445 5-103 (112)
165 3q49_B STIP1 homology and U bo 98.4 6.3E-06 2.1E-10 75.0 14.9 95 351-445 7-103 (137)
166 2vyi_A SGTA protein; chaperone 98.4 1.1E-06 3.7E-11 78.8 9.3 95 352-446 11-107 (131)
167 3dss_A Geranylgeranyl transfer 98.4 2.8E-05 9.5E-10 82.5 21.4 145 181-328 26-190 (331)
168 2qfc_A PLCR protein; TPR, HTH, 98.3 3.1E-05 1.1E-09 81.1 20.8 162 82-243 77-264 (293)
169 4gcn_A Protein STI-1; structur 98.3 2.4E-06 8.3E-11 77.6 10.4 92 354-445 9-109 (127)
170 3dss_A Geranylgeranyl transfer 98.3 0.00011 3.8E-09 77.9 24.5 237 161-425 40-315 (331)
171 3q7a_A Farnesyltransferase alp 98.3 0.0006 2E-08 72.7 30.0 180 83-266 57-257 (349)
172 2dba_A Smooth muscle cell asso 98.3 1E-05 3.4E-10 74.4 14.2 112 316-430 27-144 (148)
173 4gcn_A Protein STI-1; structur 98.3 5.9E-06 2E-10 75.0 12.0 102 318-422 9-119 (127)
174 2c2l_A CHIP, carboxy terminus 98.3 3.3E-06 1.1E-10 88.3 11.7 191 215-414 3-199 (281)
175 1ihg_A Cyclophilin 40; ppiase 98.3 7.1E-06 2.4E-10 89.4 14.7 89 352-440 272-362 (370)
176 3gw4_A Uncharacterized protein 98.3 7.7E-06 2.6E-10 79.9 13.7 149 60-208 3-174 (203)
177 3rkv_A Putative peptidylprolyl 98.3 1.7E-06 5.8E-11 82.0 8.4 121 317-437 11-150 (162)
178 1elr_A TPR2A-domain of HOP; HO 98.3 8E-06 2.7E-10 73.0 12.6 113 319-434 6-127 (131)
179 1p5q_A FKBP52, FK506-binding p 98.3 1.6E-05 5.3E-10 85.5 16.8 131 281-413 146-293 (336)
180 2xev_A YBGF; tetratricopeptide 98.2 3.5E-06 1.2E-10 75.9 9.2 101 322-424 7-115 (129)
181 3rkv_A Putative peptidylprolyl 98.2 5.3E-06 1.8E-10 78.5 10.1 87 357-443 15-121 (162)
182 2fbn_A 70 kDa peptidylprolyl i 98.2 5.7E-06 2E-10 81.2 10.4 152 260-413 13-185 (198)
183 1dce_A Protein (RAB geranylger 98.2 3.6E-05 1.2E-09 88.7 18.5 168 267-437 45-244 (567)
184 3k9i_A BH0479 protein; putativ 98.2 1.1E-06 3.6E-11 78.4 4.6 80 366-445 3-87 (117)
185 1dce_A Protein (RAB geranylger 98.2 3.5E-05 1.2E-09 88.8 18.2 165 295-484 42-235 (567)
186 2xev_A YBGF; tetratricopeptide 98.2 3.2E-05 1.1E-09 69.3 14.3 86 359-444 8-101 (129)
187 1hxi_A PEX5, peroxisome target 98.1 1.5E-05 5.1E-10 71.6 11.5 98 320-419 20-119 (121)
188 1dyo_A Endo-1,4-beta-xylanase 98.1 4.8E-05 1.6E-09 71.9 14.4 136 628-797 6-157 (160)
189 2kck_A TPR repeat; tetratricop 98.1 2E-05 7E-10 68.2 11.1 99 319-419 8-111 (112)
190 2if4_A ATFKBP42; FKBP-like, al 98.1 4.8E-06 1.6E-10 89.6 8.2 144 282-445 179-325 (338)
191 4b4t_Q 26S proteasome regulato 98.1 1.9E-05 6.6E-10 87.3 13.4 160 284-443 57-240 (434)
192 3p6b_A Cellulose 1,4-beta-cell 98.1 1.7E-05 5.8E-10 77.7 11.1 87 700-796 95-194 (205)
193 3ro3_A PINS homolog, G-protein 98.1 4.5E-05 1.5E-09 70.6 13.8 91 355-445 51-155 (164)
194 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 6.9E-06 2.4E-10 92.3 9.4 129 332-484 249-394 (457)
195 2hr2_A Hypothetical protein; a 98.1 2.7E-05 9.2E-10 72.9 11.8 109 321-429 15-146 (159)
196 3k4z_A Glycoside hydrolase fam 98.0 2.6E-05 8.8E-10 81.0 12.0 88 700-797 74-174 (289)
197 4b4t_Q 26S proteasome regulato 98.0 0.00019 6.5E-09 79.2 19.8 120 294-413 107-244 (434)
198 3ro3_A PINS homolog, G-protein 98.0 2.9E-05 9.8E-10 72.0 11.1 133 284-416 11-160 (164)
199 1elr_A TPR2A-domain of HOP; HO 98.0 2.3E-05 7.9E-10 69.9 10.1 94 353-446 4-106 (131)
200 1zu2_A Mitochondrial import re 98.0 4.7E-06 1.6E-10 77.9 5.2 82 365-446 14-118 (158)
201 2if4_A ATFKBP42; FKBP-like, al 98.0 2.3E-05 7.8E-10 84.3 10.6 152 251-419 179-333 (338)
202 3k9i_A BH0479 protein; putativ 97.9 7.3E-06 2.5E-10 72.9 5.3 93 330-423 3-99 (117)
203 2l6j_A TPR repeat-containing p 97.9 2.4E-05 8.2E-10 68.0 8.3 89 352-440 3-99 (111)
204 1ihg_A Cyclophilin 40; ppiase 97.9 1.2E-05 4.1E-10 87.6 7.5 110 318-446 224-334 (370)
205 1wao_1 Serine/threonine protei 97.9 9.7E-06 3.3E-10 91.6 6.6 129 287-418 11-154 (477)
206 3n71_A Histone lysine methyltr 97.9 0.00022 7.6E-09 80.2 17.0 120 326-445 318-461 (490)
207 1na3_A Designed protein CTPR2; 97.8 8.2E-05 2.8E-09 61.9 9.9 81 353-433 9-91 (91)
208 2l6j_A TPR repeat-containing p 97.7 5E-05 1.7E-09 65.9 6.1 63 384-446 3-65 (111)
209 1na3_A Designed protein CTPR2; 97.6 5.1E-05 1.8E-09 63.2 5.3 62 385-446 9-70 (91)
210 3ma5_A Tetratricopeptide repea 97.6 0.00021 7E-09 61.4 9.3 62 384-445 6-67 (100)
211 2kat_A Uncharacterized protein 97.6 0.00026 8.9E-09 62.2 9.5 65 352-416 18-84 (115)
212 2kat_A Uncharacterized protein 97.6 0.00025 8.5E-09 62.3 9.3 75 371-445 3-79 (115)
213 1zu2_A Mitochondrial import re 97.5 0.00014 4.9E-09 67.9 7.4 86 332-419 17-125 (158)
214 1klx_A Cysteine rich protein B 97.5 0.0012 4.2E-08 60.4 13.0 111 296-415 9-127 (138)
215 2kc7_A BFR218_protein; tetratr 97.4 0.00023 8E-09 60.5 6.2 78 359-444 6-86 (99)
216 2kc7_A BFR218_protein; tetratr 97.4 0.00026 8.9E-09 60.2 6.5 56 391-446 6-62 (99)
217 3n71_A Histone lysine methyltr 97.3 0.00076 2.6E-08 75.9 11.4 123 291-413 318-463 (490)
218 2w5f_A Endo-1,4-beta-xylanase 97.3 0.0011 3.6E-08 75.5 12.1 132 628-796 21-169 (540)
219 3bee_A Putative YFRE protein; 97.2 0.0016 5.4E-08 55.2 9.3 64 383-446 4-70 (93)
220 1klx_A Cysteine rich protein B 97.2 0.0072 2.5E-07 55.2 14.4 109 95-211 10-127 (138)
221 3ma5_A Tetratricopeptide repea 97.1 0.0014 4.6E-08 56.2 8.2 68 350-417 4-73 (100)
222 3ly7_A Transcriptional activat 97.1 0.014 4.6E-07 62.2 16.8 137 280-418 192-343 (372)
223 2y6h_A Xylanase, CBM4-2; hydro 97.1 0.056 1.9E-06 45.5 16.8 139 633-795 6-166 (167)
224 3qww_A SET and MYND domain-con 96.9 0.0056 1.9E-07 67.6 12.6 91 330-420 311-422 (433)
225 3qww_A SET and MYND domain-con 96.8 0.0022 7.4E-08 70.9 8.7 82 365-446 310-409 (433)
226 3qwp_A SET and MYND domain-con 96.7 0.011 3.9E-07 65.1 13.8 99 324-422 294-413 (429)
227 3ly7_A Transcriptional activat 96.7 0.007 2.4E-07 64.4 11.2 129 314-446 191-337 (372)
228 3mkq_A Coatomer beta'-subunit; 96.7 0.019 6.6E-07 68.6 16.7 45 161-207 663-707 (814)
229 3mkq_A Coatomer beta'-subunit; 96.7 0.042 1.4E-06 65.7 19.3 47 261-309 662-708 (814)
230 3qwp_A SET and MYND domain-con 96.7 0.0097 3.3E-07 65.7 12.3 87 360-446 294-398 (429)
231 1pc2_A Mitochondria fission pr 96.3 0.0065 2.2E-07 56.0 6.9 89 332-422 13-108 (152)
232 2v5f_A Prolyl 4-hydroxylase su 96.2 0.024 8.3E-07 48.7 9.7 75 352-426 4-87 (104)
233 1pc2_A Mitochondria fission pr 96.2 0.025 8.5E-07 52.1 10.0 63 383-445 30-97 (152)
234 3u64_A Protein TP_0956; tetrat 96.0 0.039 1.4E-06 56.3 11.6 77 369-445 179-266 (301)
235 2v5f_A Prolyl 4-hydroxylase su 95.9 0.014 4.7E-07 50.3 6.7 63 384-446 4-73 (104)
236 3lvg_A Clathrin heavy chain 1; 95.9 0.00018 6.3E-09 77.7 -6.8 365 46-441 53-476 (624)
237 3bee_A Putative YFRE protein; 95.8 0.075 2.6E-06 44.6 10.4 76 350-426 3-83 (93)
238 1qsa_A Protein (soluble lytic 95.5 2.5 8.6E-05 48.4 25.4 113 297-413 229-347 (618)
239 3mkq_B Coatomer subunit alpha; 94.9 0.99 3.4E-05 42.5 16.1 129 158-308 13-141 (177)
240 2w47_A Lipolytic enzyme, G-D-S 94.8 0.24 8.3E-06 45.3 11.4 84 706-801 48-136 (144)
241 2w3j_A Carbohydrate binding mo 94.8 0.13 4.5E-06 47.1 9.5 89 706-804 47-137 (145)
242 3mkq_B Coatomer subunit alpha; 94.6 1.2 4.1E-05 41.9 15.7 102 60-178 16-117 (177)
243 2wz8_A Cellulosome protein doc 94.4 0.4 1.4E-05 44.4 12.1 86 706-797 56-150 (156)
244 1nzn_A CGI-135 protein, fissio 94.4 0.47 1.6E-05 42.0 11.7 93 331-425 15-114 (126)
245 3ecq_A Protein SPR0328, endo-a 94.2 0.53 1.8E-05 56.4 14.9 119 662-796 1031-1178(1531)
246 2zxq_A Endo-alpha-N-acetylgala 93.8 0.3 1E-05 59.3 12.2 117 664-797 799-938 (1376)
247 3u64_A Protein TP_0956; tetrat 93.6 0.28 9.6E-06 50.1 10.0 83 333-418 179-273 (301)
248 1nzn_A CGI-135 protein, fissio 93.5 0.11 3.9E-06 45.9 6.0 80 367-446 15-101 (126)
249 1wy6_A Hypothetical protein ST 93.2 2.4 8.1E-05 37.8 13.7 135 292-445 17-151 (172)
250 2w87_A Esterase D, XYL-CBM35; 92.8 0.77 2.6E-05 41.6 10.8 78 706-795 47-130 (139)
251 1y8m_A FIS1; mitochondria, unk 92.6 0.51 1.8E-05 42.5 9.0 71 350-420 36-112 (144)
252 2wpv_A GET4, UPF0363 protein Y 92.2 12 0.00041 38.7 23.4 168 153-346 36-217 (312)
253 1wy6_A Hypothetical protein ST 91.8 6.7 0.00023 34.9 15.6 63 184-247 94-156 (172)
254 3o48_A Mitochondria fission 1 91.7 0.67 2.3E-05 41.2 8.4 75 349-423 36-116 (134)
255 4gns_B Protein CSD3, chitin bi 91.6 0.43 1.5E-05 55.8 9.2 51 392-442 344-394 (754)
256 2vzp_A Aocbm35, EXO-beta-D-glu 91.5 1.2 4.2E-05 39.5 10.3 96 686-793 27-127 (127)
257 4ady_A RPN2, 26S proteasome re 90.4 16 0.00055 43.6 21.0 249 158-412 382-656 (963)
258 4h7y_A Dual specificity protei 89.4 3.4 0.00012 37.6 11.0 55 366-420 73-129 (161)
259 4b4t_P 26S proteasome regulato 89.4 28 0.00094 38.0 23.8 96 284-379 139-244 (445)
260 3txn_A 26S proteasome regulato 89.2 15 0.00052 39.2 18.2 57 323-379 105-165 (394)
261 2wpv_A GET4, UPF0363 protein Y 89.2 22 0.00076 36.6 19.1 131 49-192 35-176 (312)
262 3lpz_A GET4 (YOR164C homolog); 89.1 23 0.0008 36.8 25.0 167 153-345 38-215 (336)
263 4b4t_P 26S proteasome regulato 88.3 9.1 0.00031 41.9 16.3 93 321-413 141-246 (445)
264 4fhn_B Nucleoporin NUP120; pro 87.7 24 0.00083 43.6 21.3 128 318-445 900-1047(1139)
265 3ffl_A Anaphase-promoting comp 87.3 3.7 0.00013 38.0 10.2 28 353-380 122-149 (167)
266 4ady_A RPN2, 26S proteasome re 86.9 58 0.002 38.8 25.6 39 67-108 220-258 (963)
267 3lvg_A Clathrin heavy chain 1; 85.8 0.008 2.7E-07 65.2 -9.7 238 150-406 54-325 (624)
268 1y8m_A FIS1; mitochondria, unk 85.3 11 0.00038 33.9 11.8 64 382-445 36-103 (144)
269 4gns_B Protein CSD3, chitin bi 83.6 11 0.00038 44.0 14.3 53 326-380 346-398 (754)
270 3ffl_A Anaphase-promoting comp 83.5 7.5 0.00026 35.9 10.2 111 322-444 25-147 (167)
271 3o48_A Mitochondria fission 1 83.4 11 0.00036 33.5 10.7 72 312-384 35-110 (134)
272 4fhn_B Nucleoporin NUP120; pro 83.2 8.1 0.00028 47.9 13.9 115 322-442 817-961 (1139)
273 4h7y_A Dual specificity protei 82.8 6.3 0.00021 35.8 9.1 50 396-445 71-120 (161)
274 2ff4_A Probable regulatory pro 81.7 3.7 0.00013 44.1 8.9 59 388-446 174-232 (388)
275 1zbp_A Hypothetical protein VP 81.0 23 0.0008 35.4 13.6 119 291-420 6-135 (273)
276 3lpz_A GET4 (YOR164C homolog); 80.7 57 0.0019 33.8 21.1 111 50-173 38-159 (336)
277 1zbp_A Hypothetical protein VP 79.1 2.3 7.8E-05 42.7 5.5 52 394-445 6-57 (273)
278 2ff4_A Probable regulatory pro 77.3 14 0.00047 39.6 11.6 70 183-253 173-247 (388)
279 2zxq_A Endo-alpha-N-acetylgala 76.0 33 0.0011 42.0 15.1 148 634-799 954-1134(1376)
280 3ltm_A Alpha-REP4; protein eng 75.5 55 0.0019 30.8 20.4 16 316-331 156-171 (211)
281 3ecq_A Protein SPR0328, endo-a 74.7 38 0.0013 41.2 14.7 148 634-799 1195-1385(1531)
282 3txn_A 26S proteasome regulato 70.9 1.1E+02 0.0039 32.4 23.9 90 186-275 104-205 (394)
283 3ltj_A Alpharep-4; protein eng 70.2 70 0.0024 29.7 20.6 48 250-297 89-136 (201)
284 1v54_E Cytochrome C oxidase po 69.8 22 0.00075 29.8 8.1 63 297-361 25-87 (109)
285 1qsa_A Protein (soluble lytic 69.6 1.6E+02 0.0053 33.5 32.6 112 196-310 229-347 (618)
286 2qx5_A Nucleoporin NIC96; mRNA 67.6 1.2E+02 0.0041 34.7 16.9 16 430-445 549-564 (661)
287 3ltj_A Alpharep-4; protein eng 62.9 97 0.0033 28.7 21.6 153 149-310 27-179 (201)
288 2uwj_G Type III export protein 62.5 56 0.0019 27.2 9.1 79 230-312 20-98 (115)
289 2p58_C Putative type III secre 62.5 68 0.0023 26.8 10.2 79 230-312 21-99 (116)
290 3ltm_A Alpha-REP4; protein eng 59.9 1.1E+02 0.0039 28.5 20.8 151 151-310 34-184 (211)
291 4gq2_M Nucleoporin NUP120; bet 59.7 49 0.0017 39.9 12.5 91 323-419 816-932 (950)
292 2y69_E Cytochrome C oxidase su 58.5 41 0.0014 29.8 8.1 63 297-361 68-130 (152)
293 4b4t_S RPN3, 26S proteasome re 58.5 44 0.0015 36.9 10.5 66 353-418 231-303 (523)
294 2p58_C Putative type III secre 57.7 73 0.0025 26.6 9.0 85 130-219 22-106 (116)
295 3esl_A Checkpoint serine/threo 55.8 62 0.0021 30.8 9.7 44 401-444 95-140 (202)
296 4b4t_R RPN7, 26S proteasome re 54.8 55 0.0019 35.3 10.8 57 152-208 133-195 (429)
297 3mv2_A Coatomer subunit alpha; 54.6 97 0.0033 31.8 11.6 42 376-417 196-239 (325)
298 1v54_E Cytochrome C oxidase po 54.1 51 0.0018 27.6 7.6 47 199-245 28-74 (109)
299 2uwj_G Type III export protein 54.0 71 0.0024 26.6 8.3 85 130-219 21-105 (115)
300 4b4t_R RPN7, 26S proteasome re 51.4 60 0.0021 35.0 10.4 94 253-346 133-237 (429)
301 2qx5_A Nucleoporin NIC96; mRNA 50.8 1.9E+02 0.0067 32.9 14.7 21 364-384 549-569 (661)
302 1oyz_A Hypothetical protein YI 46.6 2.2E+02 0.0075 27.9 23.3 242 171-431 27-279 (280)
303 3eiq_C Programmed cell death p 46.5 29 0.00098 36.5 6.5 64 254-317 220-288 (358)
304 2cdp_A Beta-agarase 1; carbohy 45.2 1.7E+02 0.0058 26.5 10.9 78 706-795 75-160 (160)
305 2y69_E Cytochrome C oxidase su 41.0 95 0.0032 27.5 7.6 59 199-258 71-129 (152)
306 3esl_A Checkpoint serine/threo 40.1 2.5E+02 0.0085 26.6 12.1 68 82-150 82-150 (202)
307 2vzs_A CSXA, EXO-beta-D-glucos 37.0 7.2 0.00024 47.7 0.0 76 706-793 952-1032(1032)
308 3esm_A Uncharacterized protein 36.2 43 0.0015 30.3 4.9 60 706-772 12-73 (152)
309 4a1g_A Mitotic checkpoint seri 35.4 1.3E+02 0.0044 27.2 8.1 42 404-445 84-127 (152)
310 2wvi_A Mitotic checkpoint seri 32.4 1.8E+02 0.0062 26.6 8.7 73 369-444 46-121 (164)
311 2bvb_A Micronemal protein 1; m 31.5 1.6E+02 0.0054 24.5 7.1 47 706-762 13-67 (137)
312 4d8m_A Pesticidal crystal prot 30.6 1.6E+02 0.0053 32.9 9.2 49 685-738 475-523 (587)
313 2nsz_A Programmed cell death p 30.0 2.2E+02 0.0075 24.7 8.6 61 153-213 10-75 (129)
314 2d2s_A Exocyst complex compone 29.9 1.6E+02 0.0056 28.6 8.6 30 350-379 88-117 (235)
315 2cov_D Beta-1,3-xylanase; carb 28.3 67 0.0023 25.8 4.2 26 695-722 52-77 (104)
316 2nsz_A Programmed cell death p 27.9 1.2E+02 0.0041 26.5 6.5 64 83-147 10-75 (129)
317 1ya0_A SMG-7 transcript varian 26.9 1.3E+02 0.0046 33.0 8.1 54 388-441 155-208 (497)
318 4b4t_S RPN3, 26S proteasome re 26.8 2.8E+02 0.0097 30.5 10.5 64 182-245 232-299 (523)
319 2d2s_A Exocyst complex compone 25.9 2.1E+02 0.007 27.9 8.4 87 86-175 24-116 (235)
320 2ion_A PDCD4, programmed cell 25.7 1.7E+02 0.0059 26.3 7.3 61 153-213 12-77 (152)
321 2r9g_A AAA ATPase, central reg 25.2 3.5E+02 0.012 25.6 9.3 64 184-248 14-85 (204)
322 2ion_A PDCD4, programmed cell 24.2 92 0.0032 28.1 5.1 65 82-147 11-77 (152)
323 4gq2_M Nucleoporin NUP120; bet 22.7 4.2E+02 0.014 31.7 12.1 52 53-107 816-867 (950)
324 2r9g_A AAA ATPase, central reg 22.6 4.5E+02 0.015 24.8 9.5 43 288-331 17-62 (204)
325 4a1g_A Mitotic checkpoint seri 21.8 4.4E+02 0.015 23.7 11.3 54 97-150 82-136 (152)
326 2xfd_A VCBM60; sugar binding p 21.8 1.3E+02 0.0043 25.4 4.8 61 722-794 9-70 (112)
327 1uxz_A Cellulase B; carbohydra 20.9 3.8E+02 0.013 23.0 8.5 70 709-795 52-129 (131)
328 2zu6_B Programmed cell death p 20.8 2.8E+02 0.0095 28.2 8.5 25 285-309 169-193 (307)
329 1ihs_I Hirutonin; hydrolase(se 20.6 33 0.0011 20.1 0.8 10 633-642 8-17 (26)
330 2cfu_A SDSA1; SDS-hydrolase, l 20.1 2.2E+02 0.0076 32.5 8.5 67 369-438 436-502 (658)
331 5gds_I Hirunorm V; serine prot 20.0 32 0.0011 20.3 0.7 10 633-642 13-22 (26)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-36 Score=352.63 Aligned_cols=441 Identities=12% Similarity=0.054 Sum_probs=388.0
Q ss_pred CChhHHHHHHHHhcCch---HHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC--CCCHHHHHHHH
Q 003457 13 LPIPPLSLLADKCKSMH---QLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQ--SPNHFMWNTLI 87 (818)
Q Consensus 13 p~~~tl~~ll~~c~~~~---~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~--~p~~~~yn~Li 87 (818)
++...|..++..|...+ .+..++..+++ ..|+..++..+...| .+.|++++|+++|+++. .++..+|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVY--CCTGDYARAKCLLTKEDLYNRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHH--HHTTCHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHH--HHcCcHHHHHHHHHHHhccccchhHHHHHH
Confidence 67778888888875444 45677777774 457888888899988 99999999999999994 68999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHH
Q 003457 88 RAQASSLNPDKAIFLYMNMRRT---------------GFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHV 152 (818)
Q Consensus 88 ~~~~~~g~~~~Al~lf~~m~~~---------------g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 152 (818)
..|.+.|++++|+++|+++... +..++..+|..++..|.+.|++++|.+.|+++++.++. +...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHH
Confidence 9999999999999999853322 22345789999999999999999999999999987643 3333
Q ss_pred HHHH--------------------------------------HHHHHhCCChHHHHHHHHHhhc--CCHHHHHHHHHHHH
Q 003457 153 VNCL--------------------------------------VRCYSVSSDLNNARQVFDEIRN--RTLNVWTTMISGYA 192 (818)
Q Consensus 153 ~~~L--------------------------------------i~~y~~~g~~~~A~~l~~~m~~--~d~~~~~~Li~~~~ 192 (818)
+..+ +..|.+.|++++|.++|+++.+ ++..+|+.++..|.
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHH
Confidence 3332 5566788999999999999987 78999999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 003457 193 QSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKA 272 (818)
Q Consensus 193 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 272 (818)
+.|++++|+++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999876 4577889999999999999999999999999765 6678899999999999999999999
Q ss_pred HHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Q 003457 273 LFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGI 349 (818)
Q Consensus 273 ~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~ 349 (818)
+|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+. .+..++..++.+|.+.|++++|.++|+++.+. .
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~ 471 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--F 471 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 9998764 5688999999999999999999999999998743 47789999999999999999999999999986 5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-------CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 350 EPKIEHYGCMVDLLGRCGKVLEAEELIKRM-------VWKPD--VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 350 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-------~~~pd--~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
+.+..+|+.++.+|.+.|++++|+++|+++ +..|+ ..+|..++.+|.+.|++++|++.++++++++|+++.
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 567899999999999999999999999998 23676 789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeeecCCC
Q 003457 421 VYVVLSNMYAEAESMKMQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLLNGNN 485 (818)
Q Consensus 421 ~y~~L~~~l~~~G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l~~~~ 485 (818)
.|..++.+|.+.|++++|.+.++.+. +++|+++.++..+++++
T Consensus 552 ~~~~l~~~~~~~g~~~~A~~~~~~~l----------------------~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 552 VHTAIALVYLHKKIPGLAITHLHESL----------------------AISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH----------------------HHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH----------------------hcCCCChHHHHHHHHHH
Confidence 99999999999999999999887774 88999999998887764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-31 Score=313.36 Aligned_cols=410 Identities=10% Similarity=-0.001 Sum_probs=355.2
Q ss_pred CCCChhHHHHHHHHhcCchH---HHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCC---------
Q 003457 11 PPLPIPPLSLLADKCKSMHQ---LKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQSP--------- 78 (818)
Q Consensus 11 ~~p~~~tl~~ll~~c~~~~~---~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p--------- 78 (818)
..|+..++..+..+|...++ +..++..+.. ..++..+++.++.+| .++|++++|+++|+++...
T Consensus 113 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 188 (597)
T 2xpi_A 113 ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCL--VKLYDWQGALNLLGETNPFRKDEKNANK 188 (597)
T ss_dssp HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHH--HHTTCHHHHHHHHCSSCTTC--------
T ss_pred hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHH--HHHhhHHHHHHHHhccCCcccccccccc
Confidence 34677788777777755544 4555555432 467899999999999 9999999999999965433
Q ss_pred ----------CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH---------------------------
Q 003457 79 ----------NHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFV--------------------------- 121 (818)
Q Consensus 79 ----------~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~l--------------------------- 121 (818)
+..+|+.++.+|.+.|++++|+++|++|.+.+.. +...+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 189 LLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp --CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred ccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 4889999999999999999999999999986433 33333333
Q ss_pred -----------HHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHHHHHHH
Q 003457 122 -----------LKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRN---RTLNVWTTM 187 (818)
Q Consensus 122 -----------l~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~---~d~~~~~~L 187 (818)
+..|.+.|++++|.++++++.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.+
T Consensus 268 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 345 (597)
T 2xpi_A 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH 345 (597)
T ss_dssp HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHH
Confidence 44566788999999999998876 47899999999999999999999999999975 356789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH
Q 003457 188 ISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGAL 267 (818)
Q Consensus 188 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~ 267 (818)
+.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+++.++.+|.+.|++
T Consensus 346 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 423 (597)
T 2xpi_A 346 LASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEH 423 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998764 6678899999999999999999999999999875 55788999999999999999
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 268 AKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMK 344 (818)
Q Consensus 268 ~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~ 344 (818)
++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+... .+..+|..++..|.+.|++++|.++|+++.
T Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999998764 4788999999999999999999999999998743 378899999999999999999999999988
Q ss_pred HHh---CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 345 RVY---GIEPK--IEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 345 ~~~---g~~p~--~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
+.. +..|+ ..+|..++.+|.+.|++++|++.|+++. ..| +..+|..++.+|.+.|++++|.+.|+++++++|+
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 753 45677 7899999999999999999999999983 334 7899999999999999999999999999999999
Q ss_pred CcchHHHHHHHHH
Q 003457 418 NHGVYVVLSNMYA 430 (818)
Q Consensus 418 ~~~~y~~L~~~l~ 430 (818)
++..+..++.+|.
T Consensus 583 ~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 583 EIMASDLLKRALE 595 (597)
T ss_dssp CHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHh
Confidence 9999999988774
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=5.8e-26 Score=251.38 Aligned_cols=368 Identities=13% Similarity=0.073 Sum_probs=325.0
Q ss_pred hcCCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 003457 60 SSSGDLSYATRLFNSIQ---SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQ 136 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~---~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~ 136 (818)
.+.|++++|++.++++. ..+...+..+...+.+.|++++|...++...+.. +.+..+|..+...+.+.|++++|.+
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 67899999999998875 3456677788888999999999999999988763 3478899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 003457 137 IHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFE 213 (818)
Q Consensus 137 ~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 213 (818)
.++++++..+. +...+..+..+|.+.|++++|.+.|+++.+. +...+..+...+...|++++|++.|+++.+.. +
T Consensus 89 ~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p 166 (388)
T 1w3b_A 89 HYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-P 166 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C
Confidence 99999987533 6678999999999999999999999998753 45578889999999999999999999998874 5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 003457 214 PNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMIS 290 (818)
Q Consensus 214 pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~ 290 (818)
-+..++..+...+...|++++|...++++++.. +.+...+..+...+...|++++|...|++..+ .+..++..+..
T Consensus 167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 245 (388)
T 1w3b_A 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence 567889999999999999999999999999886 55678888999999999999999999997764 46788999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHH
Q 003457 291 GLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVL 370 (818)
Q Consensus 291 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~ 370 (818)
.|.+.|++++|++.|+++.+..+. +..++..+..++.+.|++++|...|+++.+. .+.+..++..+...+.+.|+++
T Consensus 246 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 246 VYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999987433 5778899999999999999999999999986 5678899999999999999999
Q ss_pred HHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 371 EAEELIKRMV-WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 371 ~A~~~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
+|++.|+++. ..| +..++..++..+.+.|++++|++.|++++++.|+++.+|..++.++.+.|+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999983 445 578999999999999999999999999999999999999999999887764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.3e-26 Score=254.67 Aligned_cols=369 Identities=13% Similarity=0.106 Sum_probs=324.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 003457 86 LIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSD 165 (818)
Q Consensus 86 Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~ 165 (818)
+...+.+.|++++|++.|+++.+.... +...+..+...+.+.|++++|...++..++.. +.+...+..+...|.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 345677899999999999999886332 55677777888999999999999999999875 4478899999999999999
Q ss_pred hHHHHHHHHHhhc--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 003457 166 LNNARQVFDEIRN--R-TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFV 242 (818)
Q Consensus 166 ~~~A~~l~~~m~~--~-d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~ 242 (818)
+++|.+.|+++.+ | +..+|..+..++.+.|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999875 3 55689999999999999999999999999874 344566777888899999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 003457 243 KMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDIT 319 (818)
Q Consensus 243 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 319 (818)
.+.. +.+...+..+...|.+.|++++|.+.|+++.+ .+...|..+...+...|++++|+..|+++.+..+. +..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHH
Confidence 9875 55678899999999999999999999998874 45678999999999999999999999999886432 5788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHH
Q 003457 320 FVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAACKN 397 (818)
Q Consensus 320 ~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~ 397 (818)
+..+..++.+.|++++|.+.|+++.+. .+.+..++..+...|.+.|++++|++.|+++. .+.+..++..+...+.+
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 899999999999999999999999875 44568899999999999999999999999983 34578899999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcc
Q 003457 398 HGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTP 477 (818)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~ 477 (818)
.|++++|++.+++++++.|++...+..++.+|.+.|++++|++.++.+. +++|+++.+
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~----------------------~~~p~~~~a 375 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI----------------------RISPTFADA 375 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH----------------------TTCTTCHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------hhCCCCHHH
Confidence 9999999999999999999999999999999999999999999887774 888998887
Q ss_pred eeeecC
Q 003457 478 FVLLNG 483 (818)
Q Consensus 478 ~v~l~~ 483 (818)
|..++.
T Consensus 376 ~~~lg~ 381 (388)
T 1w3b_A 376 YSNMGN 381 (388)
T ss_dssp HHHHHH
T ss_pred HHhHHH
Confidence 766543
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.9e-23 Score=234.05 Aligned_cols=388 Identities=9% Similarity=-0.038 Sum_probs=300.2
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 003457 50 ASRLLAFCALSSSGDLSYATRLFNSIQ--SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSN 127 (818)
Q Consensus 50 ~~~Ll~~~a~~k~g~~e~A~~lf~~~~--~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~ 127 (818)
+..+-..+ .+.|++++|++.|+++. .|+...|..+..+|.+.|++++|+..|+++.+.+.. +...+..+..++.+
T Consensus 9 ~~~~g~~~--~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 9 LKDKGNQF--FRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHH--HHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHHH
Confidence 33444445 78999999999999887 589999999999999999999999999999986433 66789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh-------------------------------
Q 003457 128 VRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEI------------------------------- 176 (818)
Q Consensus 128 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m------------------------------- 176 (818)
.|++++|...++++.+.+.. +......++..+.+......+.+.+..+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999999999987643 3333333333333322222222211100
Q ss_pred -------h----------cCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----cCC--------CCCHHHHHHHH
Q 003457 177 -------R----------NRTLNVWTTMISGYAQ---SFRANEALMLFDQMLM-----EGF--------EPNSVTLASVL 223 (818)
Q Consensus 177 -------~----------~~d~~~~~~Li~~~~~---~g~~~~A~~l~~~m~~-----~g~--------~pd~~t~~~ll 223 (818)
. ..+...+..+...+.. .|++++|+..|+++.+ ..- +.+...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 0 0013445555555554 7899999999999887 311 22345677778
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHH
Q 003457 224 SACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEE 300 (818)
Q Consensus 224 ~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~ 300 (818)
..+...|++++|...++++.+.... ...+..+..+|.+.|++++|.+.|+++.+ .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8888999999999999999887633 77888889999999999999999988765 466788888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 003457 301 ALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV 380 (818)
Q Consensus 301 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 380 (818)
|+..|+++.+.... +...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|++.|+++.
T Consensus 323 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999886443 5667888888899999999999999998876 45567888889999999999999999998872
Q ss_pred ----CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 381 ----WKPD----VVMWGALLAACKN---HGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 381 ----~~pd----~~~~~~Li~a~~~---~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
..++ ...+..+...+.. .|++++|++.++++++..|++..++..++.+|.+.|++++|.+.++...
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1222 3488888888888 8999999999999999999999999999999999999999999776653
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.91 E-value=2e-23 Score=238.05 Aligned_cols=183 Identities=14% Similarity=0.116 Sum_probs=159.3
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---------hHHHHHHHHHHHHcCCCCCHH
Q 003457 81 FMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRS---------LNCCKQIHTHVSKSGLDLDLH 151 (818)
Q Consensus 81 ~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~---------~~~A~~~~~~m~~~g~~p~~~ 151 (818)
..++.+|++|++.|++++|+++|++|++.|++||..||+.||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788888888888888888888888888888888888888888876654 678888888888888888888
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 152 VVNCLVRCYSVSSDLNNARQVFDEIRN----RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACA 227 (818)
Q Consensus 152 ~~~~Li~~y~~~g~~~~A~~l~~~m~~----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~ 227 (818)
+|++||.+|++.|++++|.++|++|.+ +|..+|+.||.+|++.|+.++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 888888888888888888888888875 4888888999999999999999999999998899999999999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 003457 228 QSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTK 263 (818)
Q Consensus 228 ~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~ 263 (818)
+.|+.++|.+++++|.+.+..|+..+|+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 999999999999999988888999999888888765
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.7e-21 Score=223.04 Aligned_cols=393 Identities=11% Similarity=-0.046 Sum_probs=312.4
Q ss_pred hcCchHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhCCChhHHHH
Q 003457 25 CKSMHQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQ---SPNHFMWNTLIRAQASSLNPDKAIF 101 (818)
Q Consensus 25 c~~~~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~---~p~~~~yn~Li~~~~~~g~~~~Al~ 101 (818)
.+....+...+..+++.. |+...+..+...| .+.|++++|++.|+++. ..+...|..+..+|.+.|++++|+.
T Consensus 19 ~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK--EDPVFYSNLSACY--VSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC--ccHHHHHhHHHHH--HHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 456667788888888876 7888999888888 99999999999999876 3567899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH-----------------------------------HcCC
Q 003457 102 LYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVS-----------------------------------KSGL 146 (818)
Q Consensus 102 lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~-----------------------------------~~g~ 146 (818)
.|+++.+.+. ++......++..+........+.+.+..+. ....
T Consensus 95 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 95 DLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 9999998753 243333344443333222222222221110 0000
Q ss_pred ---------CCCHHHHHHHHHHHHh---CCChHHHHHHHHHhhc-----C------------CHHHHHHHHHHHHHcCCh
Q 003457 147 ---------DLDLHVVNCLVRCYSV---SSDLNNARQVFDEIRN-----R------------TLNVWTTMISGYAQSFRA 197 (818)
Q Consensus 147 ---------~p~~~~~~~Li~~y~~---~g~~~~A~~l~~~m~~-----~------------d~~~~~~Li~~~~~~g~~ 197 (818)
+.+...+..+...+.. .|++++|.+.|+++.+ . +...|..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 1114444555555554 8999999999998876 2 344788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhC
Q 003457 198 NEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSM 277 (818)
Q Consensus 198 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m 277 (818)
++|+..|+++.+.. |+...+..+..++...|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++
T Consensus 254 ~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 254 LGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999875 447888889999999999999999999999875 556788899999999999999999999987
Q ss_pred CC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC--
Q 003457 278 PE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK-- 352 (818)
Q Consensus 278 ~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~-- 352 (818)
.+ .+...+..+...|...|++++|+..++++.+.... +...+..+..++.+.|++++|...++++.+.....++
T Consensus 331 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 331 KELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp HHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred HHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 53 46778999999999999999999999999886432 5678888999999999999999999998875323333
Q ss_pred --HHHHHHHHHHHHH---cCCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 353 --IEHYGCMVDLLGR---CGKVLEAEELIKRMV-WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 353 --~~~~~~Li~~~~~---~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
...+..+...|.+ .|++++|.+.|+++. ..| +..++..+...|.+.|++++|.+.|++++++.|++...+..+
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4489999999999 999999999999982 334 678899999999999999999999999999999988777666
Q ss_pred H
Q 003457 426 S 426 (818)
Q Consensus 426 ~ 426 (818)
.
T Consensus 490 ~ 490 (514)
T 2gw1_A 490 T 490 (514)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.91 E-value=8.8e-24 Score=240.96 Aligned_cols=210 Identities=13% Similarity=0.119 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHh
Q 003457 98 KAIFLYMNMRRTGFAPNQH-TFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEI 176 (818)
Q Consensus 98 ~Al~lf~~m~~~g~~pd~~-ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m 176 (818)
.+..+.+++++.+..+... .++.+|.+|++.|++++|.++|++|.+.|++||..+|+.||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 4556667777777765544 58889999999999999999999999999999999999999999887765432
Q ss_pred hcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHH
Q 003457 177 RNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTA 256 (818)
Q Consensus 177 ~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~ 256 (818)
.+.+..++|.++|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|+.|+..+|+.
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12344677888888998889999999999999999999999999999999998888888888888
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 003457 257 LVHMYTKNGALAKAKALFDSMPE----RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCH 329 (818)
Q Consensus 257 Li~~~~~~g~~~~A~~~f~~m~~----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 329 (818)
||.+|++.|++++|.++|++|.+ ||..+|++||.+|++.|+.++|.++|++|++.|..|+..||+.++..|+.
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 88888888777777777777753 67777888888888888888888888888888888888888887777664
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=8.9e-21 Score=213.49 Aligned_cols=334 Identities=8% Similarity=-0.058 Sum_probs=229.7
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003457 79 NHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVR 158 (818)
Q Consensus 79 ~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~ 158 (818)
+...|..+...+.+.|++++|+.+|+++.+... .+...+..+...+...|++++|...++++++.++. +...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 445566666667777777777777777665422 25666666666777777777777777777665432 4566666677
Q ss_pred HHHhCCChHHHHHHHHHhhcCC---H---HHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 003457 159 CYSVSSDLNNARQVFDEIRNRT---L---NVWTTM------------ISGYAQSFRANEALMLFDQMLMEGFEPNSVTLA 220 (818)
Q Consensus 159 ~y~~~g~~~~A~~l~~~m~~~d---~---~~~~~L------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 220 (818)
+|.+.|++++|.+.|+++.+.+ . ..+..+ ...+.+.|++++|+..|+++.+.. +.+...+.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 7777777777777777665432 2 344433 444777888888888888887764 45677777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHH---------
Q 003457 221 SVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAM--------- 288 (818)
Q Consensus 221 ~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~L--------- 288 (818)
.+..++.+.|++++|...++++.+.. +.+..++..++.+|.+.|++++|.+.|+++.+ .+...+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 78888888888888888888887764 45667777788888888888888888877653 233344433
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003457 289 ---ISGLASHGHAEEALDLFRKLEKEQIVPN----DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVD 361 (818)
Q Consensus 289 ---i~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~ 361 (818)
+..|.+.|++++|+.+|+++.+..+. + ...+..+..++.+.|++++|...++++.+. .+.+...|..+..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 67788888888888888888775322 2 346677778888888888888888887765 3456788888888
Q ss_pred HHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHH------------HHHcC-----CHHHHHHHHHH-HHhcCCCCc
Q 003457 362 LLGRCGKVLEAEELIKRM-VWKPD-VVMWGALLAA------------CKNHG-----NIEVAERVVKE-IIALEPNNH 419 (818)
Q Consensus 362 ~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a------------~~~~g-----~~~~A~~~~~~-~~~~~P~~~ 419 (818)
+|.+.|++++|.+.|+++ ...|+ ...+..+..+ |...| +.+++.+.|++ +++..|++.
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~ 415 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNF 415 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCC
Confidence 888888888888888887 44453 5555555533 22233 55677777775 677777743
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.9e-20 Score=210.81 Aligned_cols=325 Identities=11% Similarity=-0.015 Sum_probs=268.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 003457 99 AIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRN 178 (818)
Q Consensus 99 Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~ 178 (818)
+...+.+.... -+.+...+..+...+.+.|++++|..+|+++++..+ .+...+..+..+|.+.|++++|.+.|+++.+
T Consensus 11 ~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444443 223567888999999999999999999999998753 3788999999999999999999999999875
Q ss_pred C---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHhcCChhHHHHHHH
Q 003457 179 R---TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNS---VTLASV------------LSACAQSGCLELGEKVHV 240 (818)
Q Consensus 179 ~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~---~t~~~l------------l~~~~~~g~~~~A~~i~~ 240 (818)
. +..+|..++..|.+.|++++|++.|+++.+.. +.+. ..+..+ ...+...|++++|...++
T Consensus 89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 56789999999999999999999999998763 2233 444444 444889999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 003457 241 FVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPND 317 (818)
Q Consensus 241 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 317 (818)
++.+.. +.+...+..++.+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.+.... +.
T Consensus 168 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 245 (450)
T 2y4t_A 168 KILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HK 245 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hH
Confidence 999875 56788899999999999999999999998874 57889999999999999999999999999876332 34
Q ss_pred HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHc-
Q 003457 318 ITFVGV------------LSACCHAGFIDVGRQIFGSMKRVYGIEPK-----IEHYGCMVDLLGRCGKVLEAEELIKRM- 379 (818)
Q Consensus 318 ~t~~~l------------l~a~~~~g~~~~A~~~~~~m~~~~g~~p~-----~~~~~~Li~~~~~~g~~~~A~~~~~~m- 379 (818)
..+..+ +..|.+.|++++|...|+++.+. .|+ ...+..+..++.+.|++++|++.++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444 78899999999999999999875 343 457889999999999999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 003457 380 VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAE 431 (818)
Q Consensus 380 ~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~ 431 (818)
...| +...|..++.+|...|++++|++.+++++++.|+++..+..++.+...
T Consensus 323 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence 3344 689999999999999999999999999999999999999998855443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=8.8e-21 Score=218.60 Aligned_cols=385 Identities=9% Similarity=0.001 Sum_probs=295.5
Q ss_pred HHHHHHHHHhhhhcCCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 48 FAASRLLAFCALSSSGDLSYATRLFNSIQ---SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKA 124 (818)
Q Consensus 48 ~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~---~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~ 124 (818)
..+..+-..+ .+.|++++|++.|+++. ..+...|..+..+|.+.|++++|++.|+++.+.+.. +...+..+...
T Consensus 26 ~~~~~~g~~~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHF--FTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHH--HHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 3444444555 78999999999999876 357788888999999999999999999998886433 67788888888
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCC----------HH------------
Q 003457 125 CSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRT----------LN------------ 182 (818)
Q Consensus 125 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d----------~~------------ 182 (818)
+...|++++|...++ .+....... ...+..+...+..++|...++++...+ ..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999886 433322211 222334445555667777777764421 00
Q ss_pred ------------------HHHHHHHHHH--------HcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhc
Q 003457 183 ------------------VWTTMISGYA--------QSFRANEALMLFDQMLMEGFEPNS-------VTLASVLSACAQS 229 (818)
Q Consensus 183 ------------------~~~~Li~~~~--------~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~~~~~~ 229 (818)
....+...+. ..+++++|+.+|+++.+.. +.+. .++..+...+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhc
Confidence 1122222211 2257899999999998763 2232 3466677788899
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHH
Q 003457 230 GCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFR 306 (818)
Q Consensus 230 g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~ 306 (818)
|++++|...++++.+.. |+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+
T Consensus 257 ~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 257 NNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp TCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999875 4478888899999999999999999998764 467889999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC----CC
Q 003457 307 KLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV----WK 382 (818)
Q Consensus 307 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~ 382 (818)
++.+.... +...+..+..++...|++++|...++++.+. .+.+...+..+...|.+.|++++|++.|+++. ..
T Consensus 335 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 335 KAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 99987433 4678888999999999999999999999886 45667899999999999999999999999872 11
Q ss_pred ----CCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 383 ----PDVVMWGALLAACKNH----------GNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 383 ----pd~~~~~~Li~a~~~~----------g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
.....+..+...+.+. |++++|+..|+++++..|++..++..++.+|.+.|++++|.+.++...
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1233455566677777 999999999999999999999999999999999999999999776653
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=3.6e-19 Score=205.10 Aligned_cols=387 Identities=12% Similarity=0.001 Sum_probs=295.0
Q ss_pred hcCchHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhCCChhHHHH
Q 003457 25 CKSMHQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQ---SPNHFMWNTLIRAQASSLNPDKAIF 101 (818)
Q Consensus 25 c~~~~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~---~p~~~~yn~Li~~~~~~g~~~~Al~ 101 (818)
.++...+...+..+++.. ..+...+..+...| .+.|++++|++.|+++. ..+...|..+...+.+.|++++|+.
T Consensus 38 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~--~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELD-PNEPVFYSNISACY--ISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMF 114 (537)
T ss_dssp TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 355566678888888764 34677888888877 89999999999999876 3568899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcC------CCCCHH------------------------
Q 003457 102 LYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSG------LDLDLH------------------------ 151 (818)
Q Consensus 102 lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~------------------------ 151 (818)
.|+.+.. .|+... ..+..+...+....+...++.+++.. ..|+..
T Consensus 115 ~~~~~~~---~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (537)
T 3fp2_A 115 DLSVLSL---NGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY 189 (537)
T ss_dssp HHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS
T ss_pred HHHHHhc---CCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc
Confidence 9974422 233221 12333444445567777777775431 111111
Q ss_pred ------HHHHHHHHHHh--------CCChHHHHHHHHHhhcCC----------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003457 152 ------VVNCLVRCYSV--------SSDLNNARQVFDEIRNRT----------LNVWTTMISGYAQSFRANEALMLFDQM 207 (818)
Q Consensus 152 ------~~~~Li~~y~~--------~g~~~~A~~l~~~m~~~d----------~~~~~~Li~~~~~~g~~~~A~~l~~~m 207 (818)
....+...+.. .+++++|.++|+++.+.+ ..++..+...+...|++++|+..|+++
T Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 190 DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22223322222 247899999999987642 225777888899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhh
Q 003457 208 LMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIAT 284 (818)
Q Consensus 208 ~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~ 284 (818)
.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+...
T Consensus 270 ~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 346 (537)
T 3fp2_A 270 INL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346 (537)
T ss_dssp HHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHH
T ss_pred Hhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 986 4668888889999999999999999999999886 55788899999999999999999999998864 45678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHH
Q 003457 285 WNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEP----KIEHYGCMV 360 (818)
Q Consensus 285 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p----~~~~~~~Li 360 (818)
|..+...|...|++++|+..++++.+... .+...+..+..++...|++++|...|+++.+.....+ ....+..+.
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a 425 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKA 425 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH
Confidence 99999999999999999999999998743 3567888899999999999999999999876521111 233355666
Q ss_pred HHHHHc----------CCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHH
Q 003457 361 DLLGRC----------GKVLEAEELIKRMV-WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYV 423 (818)
Q Consensus 361 ~~~~~~----------g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~ 423 (818)
..|.+. |++++|++.|+++. ..| +...+..+...|.+.|++++|++.|++++++.|++.....
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 778888 99999999999983 334 5788999999999999999999999999999999766544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=4.3e-19 Score=192.25 Aligned_cols=311 Identities=11% Similarity=-0.009 Sum_probs=183.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHHHHHHHHHH
Q 003457 114 NQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRN---RTLNVWTTMISG 190 (818)
Q Consensus 114 d~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~---~d~~~~~~Li~~ 190 (818)
|...+..+...+...|++++|...++++++..+. +...+..+..+|...|++++|.+.|+++.+ .+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4556777888888888999999988888887543 677888888888888888888888888765 255678888888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCcHHHH
Q 003457 191 YAQSFRANEALMLFDQMLMEGFEP----NSVTLASV------------LSACAQSGCLELGEKVHVFVKMRGFEMGAILG 254 (818)
Q Consensus 191 ~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~l------------l~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~ 254 (818)
+...|++++|+..|+++.+. .| +...+..+ ...+...|++++|...++++.+.. +.+...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 88888888888888888765 34 33333333 345555666666666666666553 3445555
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------
Q 003457 255 TALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVG--------- 322 (818)
Q Consensus 255 ~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~--------- 322 (818)
..+..+|.+.|++++|.+.|+++.+ .+...|..+...|...|++++|...|+++.+.... +...+..
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHH
Confidence 5556666666666666666655443 24455555555666666666666666665554221 2222211
Q ss_pred ---HHHHHHHcCCHHHHHHHHHHHHHHhCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHH
Q 003457 323 ---VLSACCHAGFIDVGRQIFGSMKRVYGIEPKI----EHYGCMVDLLGRCGKVLEAEELIKRMV-WKP-DVVMWGALLA 393 (818)
Q Consensus 323 ---ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~----~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~ 393 (818)
+...+.+.|++++|...++++.+. .+.+. ..+..+..+|.+.|++++|++.|+++. ..| +...+..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 133344555555555555555443 11121 123334445555555555555555441 122 3445555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAE 431 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~ 431 (818)
.+...|++++|++.|+++++++|++...+..+..++..
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 55555555555555555555555555554444444433
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=2.2e-18 Score=186.60 Aligned_cols=292 Identities=8% Similarity=-0.087 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003457 81 FMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCY 160 (818)
Q Consensus 81 ~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y 160 (818)
..+..+...+.+.|++++|+..|+++.+.... +...+..+...+...|++++|...++++++..+. +...+..+..+|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 34444555555555555555555555543222 3445555555555555555555555555554321 344555555555
Q ss_pred HhCCChHHHHHHHHHhhcCCH---H---HHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 003457 161 SVSSDLNNARQVFDEIRNRTL---N---VWTTM------------ISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASV 222 (818)
Q Consensus 161 ~~~g~~~~A~~l~~~m~~~d~---~---~~~~L------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 222 (818)
.+.|++++|.+.|+++.+.++ . .+..+ ...+...|++++|++.++++.+.. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 555555555555555544222 1 22222 344555555555555555555442 3344445555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHH------------H
Q 003457 223 LSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWN------------A 287 (818)
Q Consensus 223 l~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~------------~ 287 (818)
...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+ .+...+. .
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555443 33444555555555555555555555554432 1222221 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003457 288 MISGLASHGHAEEALDLFRKLEKEQIVPND----ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLL 363 (818)
Q Consensus 288 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~ 363 (818)
+...+.+.|++++|+..++++.+.... +. ..+..+..++.+.|++++|...++++.+. .+.+...+..+...|
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 133455555555555555555543221 11 11223444555555555555555555543 233445555555555
Q ss_pred HHcCCHHHHHHHHHHc
Q 003457 364 GRCGKVLEAEELIKRM 379 (818)
Q Consensus 364 ~~~g~~~~A~~~~~~m 379 (818)
.+.|++++|.+.|+++
T Consensus 317 ~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 5555555555555554
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.83 E-value=8.5e-17 Score=183.96 Aligned_cols=367 Identities=10% Similarity=-0.027 Sum_probs=312.9
Q ss_pred CChHHHHHHHHHhhhhc----CCCHHHHHHHHhhcC-CCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCH
Q 003457 45 QDHFAASRLLAFCALSS----SGDLSYATRLFNSIQ-SPNHFMWNTLIRAQAS----SLNPDKAIFLYMNMRRTGFAPNQ 115 (818)
Q Consensus 45 ~d~~~~~~Ll~~~a~~k----~g~~e~A~~lf~~~~-~p~~~~yn~Li~~~~~----~g~~~~Al~lf~~m~~~g~~pd~ 115 (818)
-+......|-.+| .. .+++++|.+.|++.. ..+...+..|...|.. .+++++|+..|++..+.| +.
T Consensus 37 g~~~a~~~lg~~y--~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 37 GEAKAQLELGYRY--FQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp TCHHHHHHHHHHH--HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CCHHHHHHHHHHH--HcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 4667777777667 55 899999999999876 4678889999999998 899999999999998864 66
Q ss_pred HHHHHHHHHHHc----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHhhcC-CHHHHHH
Q 003457 116 HTFTFVLKACSN----VRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSV----SSDLNNARQVFDEIRNR-TLNVWTT 186 (818)
Q Consensus 116 ~ty~~ll~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~----~g~~~~A~~l~~~m~~~-d~~~~~~ 186 (818)
..+..|...+.. .+++++|.+.+++..+.+ +...+..|..+|.. .++.++|.+.|++..+. +..++..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777788888887 789999999999999876 66778888888987 88999999999988764 7778999
Q ss_pred HHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 003457 187 MISGYAQ----SFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQ----SGCLELGEKVHVFVKMRGFEMGAILGTALV 258 (818)
Q Consensus 187 Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~----~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li 258 (818)
|...|.. .+++++|++.|++..+.+ +...+..+...|.. .++.++|...+++..+.+ +...+..|.
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 262 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLG 262 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 9999998 899999999999998875 56777778888876 789999999999998865 456677788
Q ss_pred HHHHh----CCCHHHHHHHHhhCCC-CChhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 259 HMYTK----NGALAKAKALFDSMPE-RNIATWNAMISGLASH-----GHAEEALDLFRKLEKEQIVPNDITFVGVLSACC 328 (818)
Q Consensus 259 ~~~~~----~g~~~~A~~~f~~m~~-~d~~~~~~Li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 328 (818)
.+|.. .++.++|.+.|++..+ .+...+..|...|... +++++|+..|++..+.+ +...+..+...|.
T Consensus 263 ~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 263 YILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 88888 8999999999998876 4677888888889887 89999999999999875 5567778888888
Q ss_pred HcC---CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 003457 329 HAG---FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR----CGKVLEAEELIKRMVWKPDVVMWGALLAACKN---- 397 (818)
Q Consensus 329 ~~g---~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~---- 397 (818)
+.| ++++|.+.|++..+. .+...+..|..+|.. .+++++|++.|+++....+...+..|...|.+
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCC
Confidence 766 789999999998864 568899999999999 89999999999998545578889999999988
Q ss_pred cCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHHh
Q 003457 398 HGNIEVAERVVKEIIALEPN---NHGVYVVLSNMYAEA 432 (818)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~P~---~~~~y~~L~~~l~~~ 432 (818)
.++.++|...|+++.+.+|+ ++.+...++.++.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 89999999999999999954 788888888776643
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=2.8e-18 Score=183.89 Aligned_cols=278 Identities=13% Similarity=0.038 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 149 DLHVVNCLVRCYSVSSDLNNARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSA 225 (818)
Q Consensus 149 ~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~ 225 (818)
+...+..++..+...|++++|.++|+++.+. +...+..++..+...|++++|+.+++++.+.. +.+...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 3344445555555556666666666555432 22344445555555556666666555555542 3334445555555
Q ss_pred HHhcC-ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHH
Q 003457 226 CAQSG-CLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEA 301 (818)
Q Consensus 226 ~~~~g-~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A 301 (818)
+...| ++++|...++++.+.. +.+...+..+..+|...|++++|.+.|+++.+ .+...+..+...|...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHH
Confidence 55555 5555555555555443 22334444455555555555555555544432 2233444444445555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003457 302 LDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGI-------EPKIEHYGCMVDLLGRCGKVLEAEE 374 (818)
Q Consensus 302 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~-------~p~~~~~~~Li~~~~~~g~~~~A~~ 374 (818)
+..++++.+... .+...+..+...+...|++++|...++++.+...- +.+...+..+...|.+.|++++|++
T Consensus 179 ~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 555555444321 13344444444455555555555555444433100 2223344444444444444444444
Q ss_pred HHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003457 375 LIKRMV-WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMY 429 (818)
Q Consensus 375 ~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l 429 (818)
.|+++. ..| +...+..+...+.+.|++++|.+.+++++++.|+++..+..++.++
T Consensus 258 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 444441 111 2344444444444444444444444444444444444444444444
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=4.3e-18 Score=182.35 Aligned_cols=261 Identities=9% Similarity=0.006 Sum_probs=173.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 003457 180 TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVH 259 (818)
Q Consensus 180 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~ 259 (818)
+...+..++..+...|++++|+++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44455666666777777777777777776653 3344455556666667777777777777777654 445566666777
Q ss_pred HHHhCC-CHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 003457 260 MYTKNG-ALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDV 335 (818)
Q Consensus 260 ~~~~~g-~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 335 (818)
.+...| ++++|.+.|+++.+ .+...|..+...|...|++++|+..|+++.+.... +...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 777777 77777777776554 34556777777777777777777777777665322 34455556667777777777
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHHcCCHHHH
Q 003457 336 GRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVW-----------KPDVVMWGALLAACKNHGNIEVA 404 (818)
Q Consensus 336 A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-----------~pd~~~~~~Li~a~~~~g~~~~A 404 (818)
|...++++.+. .+.+...+..+...|.+.|++++|++.|+++.. ..+..++..+...+...|++++|
T Consensus 178 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 178 AERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 77777776653 344566677777777777777777777766520 22345666777777777777777
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 405 ERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 405 ~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
++.+++++++.|++...+..++.+|.+.|++++|.+.++..
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77777777777777777777777777777777777755443
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=1.8e-15 Score=172.91 Aligned_cols=357 Identities=11% Similarity=-0.013 Sum_probs=305.9
Q ss_pred HHHHhhc-CCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHH
Q 003457 69 TRLFNSI-QSPNHFMWNTLIRAQAS----SLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSN----VRSLNCCKQIHT 139 (818)
Q Consensus 69 ~~lf~~~-~~p~~~~yn~Li~~~~~----~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~----~g~~~~A~~~~~ 139 (818)
.+.+++. ...+...+..|...|.. .+++++|+..|++..+.| +...+..|...|.. .++.++|.+.++
T Consensus 27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 3444433 35688888889999988 899999999999998863 66788888888888 899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHhhcC-CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHc
Q 003457 140 HVSKSGLDLDLHVVNCLVRCYSV----SSDLNNARQVFDEIRNR-TLNVWTTMISGYAQ----SFRANEALMLFDQMLME 210 (818)
Q Consensus 140 ~m~~~g~~p~~~~~~~Li~~y~~----~g~~~~A~~l~~~m~~~-d~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~ 210 (818)
+..+.+ +...+..|..+|.. .+++++|.+.|++..+. +..++..|...|.. .+++++|++.|++..+.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 999876 66777888899988 88999999999998765 67788999999988 78999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----CCCHHHHHHHHhhCCC-CC
Q 003457 211 GFEPNSVTLASVLSACAQ----SGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTK----NGALAKAKALFDSMPE-RN 281 (818)
Q Consensus 211 g~~pd~~t~~~ll~~~~~----~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~f~~m~~-~d 281 (818)
+ +...+..+...|.. .++.++|.+.+++..+.+ +...+..|..+|.. .+++++|.+.|++..+ .+
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~ 254 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN 254 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 5 67788888888887 899999999999999875 45677788888886 8899999999998775 56
Q ss_pred hhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHhCCCCC
Q 003457 282 IATWNAMISGLAS----HGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHA-----GFIDVGRQIFGSMKRVYGIEPK 352 (818)
Q Consensus 282 ~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~A~~~~~~m~~~~g~~p~ 352 (818)
...+..+...|.. .+++++|+..|++..+.| +...+..+...|... +++++|...|++..+. .+
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~ 327 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GD 327 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CC
Confidence 7788888888888 899999999999998764 566777888888887 8999999999998874 35
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 353 IEHYGCMVDLLGRCG---KVLEAEELIKRMVWKPDVVMWGALLAACKN----HGNIEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g---~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~----~g~~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
...+..|..+|.+.| ++++|++.|+++....+...+..|...|.. .+++++|+++|+++.+.+ ++.++..|
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L 405 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Confidence 678888988898866 889999999998545678899999999998 899999999999998864 58899999
Q ss_pred HHHHHH----hhchHHHHHHHHHHH
Q 003457 426 SNMYAE----AESMKMQLEILLVQV 446 (818)
Q Consensus 426 ~~~l~~----~G~~~eA~~l~~~~~ 446 (818)
+.+|.+ .+++++|.+.++...
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~ 430 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTAS 430 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 999998 899999999777664
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=1.8e-17 Score=180.97 Aligned_cols=257 Identities=13% Similarity=-0.015 Sum_probs=186.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 003457 183 VWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYT 262 (818)
Q Consensus 183 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~ 262 (818)
.+..+...+.+.|++++|+..|+++++.. +.+...+..+..++...|++++|...++++.+.. +.+...+..++.+|.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34455555555555555555555555442 3344455555555555555555555555555543 334455555555555
Q ss_pred hCCCHHHHHHHHhhCCC--C-ChhhH----------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 003457 263 KNGALAKAKALFDSMPE--R-NIATW----------------NAMISGLASHGHAEEALDLFRKLEKEQIVP-NDITFVG 322 (818)
Q Consensus 263 ~~g~~~~A~~~f~~m~~--~-d~~~~----------------~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ 322 (818)
+.|++++|.+.|+++.+ | +...+ ..+.. +...|++++|+..|+++.+..+.. +...+..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 55555555555554432 1 11111 12333 348899999999999999864332 5788899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC
Q 003457 323 VLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGN 400 (818)
Q Consensus 323 ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~ 400 (818)
+..++.+.|++++|...++++.+. .+.+...+..+...|.+.|++++|++.|+++ ...| +...+..+...|.+.|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999999876 4556889999999999999999999999998 3334 58899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHHhhchHHHHHHHHH
Q 003457 401 IEVAERVVKEIIALEPNN-----------HGVYVVLSNMYAEAESMKMQLEILLV 444 (818)
Q Consensus 401 ~~~A~~~~~~~~~~~P~~-----------~~~y~~L~~~l~~~G~~~eA~~l~~~ 444 (818)
+++|++.|++++++.|++ ...|..++.+|.+.|++++|.++.+.
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 999999999999999887 78999999999999999999997653
No 20
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.3e-15 Score=172.61 Aligned_cols=365 Identities=10% Similarity=-0.093 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHcC------
Q 003457 80 HFMWNTLIRAQASSLNPDKAIFLYMNMRRT-------GFAP-NQHTFTFVLKACSNVRSLNCCKQIHTHVSKSG------ 145 (818)
Q Consensus 80 ~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~-------g~~p-d~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g------ 145 (818)
...||.|...+...|++++|++.|++..+. ...| ...+|..+..+|...|++++|...++++++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666667777776666665431 0122 23466666666777777777776666655421
Q ss_pred CC-CCHHHHHHHHHHHHh--CCChHHHHHHHHHhhc---CCHHHHHHHHHH---HHHcCChHHHHHHHHHHHHcCCCCCH
Q 003457 146 LD-LDLHVVNCLVRCYSV--SSDLNNARQVFDEIRN---RTLNVWTTMISG---YAQSFRANEALMLFDQMLMEGFEPNS 216 (818)
Q Consensus 146 ~~-p~~~~~~~Li~~y~~--~g~~~~A~~l~~~m~~---~d~~~~~~Li~~---~~~~g~~~~A~~l~~~m~~~g~~pd~ 216 (818)
.. ....++..+..++.+ .+++++|.+.|++..+ .+...+..+..+ +...++.++|++.|++.++.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 01 123344444444433 3456677777776653 234444444433 233456666777777766653 3344
Q ss_pred HHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHH
Q 003457 217 VTLASVLSACAQ----SGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMI 289 (818)
Q Consensus 217 ~t~~~ll~~~~~----~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li 289 (818)
..+..+...+.. .++.++|.+.+++..... +.+..++..+...|.+.|++++|.+.|++..+ .+..++..+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 288 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 455444444433 345666777777766654 44556666677777777777777777766653 2344555555
Q ss_pred HHHHH-------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Q 003457 290 SGLAS-------------------HGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIE 350 (818)
Q Consensus 290 ~~~~~-------------------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~ 350 (818)
..|.. .+.+++|...+++..+..+. +...+..+...+...|++++|+..|+++.+. .
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~ 364 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSK---E 364 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---C
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---C
Confidence 44432 23467788888888776432 4456778889999999999999999998864 3
Q ss_pred CCHH----HHHHHHHH-HHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 003457 351 PKIE----HYGCMVDL-LGRCGKVLEAEELIKRM-VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVV 424 (818)
Q Consensus 351 p~~~----~~~~Li~~-~~~~g~~~~A~~~~~~m-~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~ 424 (818)
++.. .+..+... +...|++++|++.|+++ ...|+...... ..+.+.+++++.++.+|+++.+|..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3322 23333332 34689999999999887 45565433222 2345667788899999999999999
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeee
Q 003457 425 LSNMYAEAESMKMQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLL 481 (818)
Q Consensus 425 L~~~l~~~G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l 481 (818)
|+.+|...|++++|++.++..+ ++.|.+|.+...+
T Consensus 436 LG~~~~~~g~~~~A~~~y~kAL----------------------e~~~~~p~a~~~~ 470 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGL----------------------ESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHCC---------------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----------------------hcCCCCCcHhhcC
Confidence 9999999999999999877763 8888888776544
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=2.2e-17 Score=180.47 Aligned_cols=258 Identities=11% Similarity=-0.008 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 003457 182 NVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMY 261 (818)
Q Consensus 182 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~ 261 (818)
..|..+...+.+.|++++|++.|+++++.. +.+...+..+..++...|++++|...++++++.. +.+...+..++.+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346667777777777777777777777654 4466677777777777777777777777777664 44566677777777
Q ss_pred HhCCCHHHHHHHHhhCCCCC-------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 003457 262 TKNGALAKAKALFDSMPERN-------------IATWNAMISGLASHGHAEEALDLFRKLEKEQIV-PNDITFVGVLSAC 327 (818)
Q Consensus 262 ~~~g~~~~A~~~f~~m~~~d-------------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~ 327 (818)
.+.|++++|.+.|+++.+.+ ...+..+...+.+.|++++|+.+|+++.+..+. ++...+..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 77777777777777665411 223445578899999999999999999987433 2678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 003457 328 CHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAE 405 (818)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~ 405 (818)
...|++++|...|+++.+. .+.+..++..+..+|.+.|++++|++.|+++ ...| +..++..+..+|.+.|++++|+
T Consensus 224 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999886 5567899999999999999999999999998 3345 5889999999999999999999
Q ss_pred HHHHHHHhcCCC------------CcchHHHHHHHHHHhhchHHHHHHHH
Q 003457 406 RVVKEIIALEPN------------NHGVYVVLSNMYAEAESMKMQLEILL 443 (818)
Q Consensus 406 ~~~~~~~~~~P~------------~~~~y~~L~~~l~~~G~~~eA~~l~~ 443 (818)
+.|++++++.|+ +...+..++.++...|+.+.|.++.+
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999998877 36789999999999999998887543
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=7e-15 Score=169.75 Aligned_cols=392 Identities=10% Similarity=0.038 Sum_probs=288.6
Q ss_pred CChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 003457 45 QDHFAASRLLAFCALSSSGDLSYATRLFNSIQS---PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFV 121 (818)
Q Consensus 45 ~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~---p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~l 121 (818)
.+...|..++. + .+.|+++.|..+|+++.+ .+...|..++..+.+.|++++|..+|+++.+. .|+...|...
T Consensus 11 ~~~~~w~~l~~-~--~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-E--AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-H--HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCHHHHHHHHH-H--HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 36778888887 4 578999999999999863 46778999999999999999999999999875 4677777766
Q ss_pred HHHH-HccCChHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------CCChHHHHHHHHHhhcC-C---H
Q 003457 122 LKAC-SNVRSLNCCKQ----IHTHVSKS-GLDL-DLHVVNCLVRCYSV---------SSDLNNARQVFDEIRNR-T---L 181 (818)
Q Consensus 122 l~~~-~~~g~~~~A~~----~~~~m~~~-g~~p-~~~~~~~Li~~y~~---------~g~~~~A~~l~~~m~~~-d---~ 181 (818)
+... ...|+.+.|.+ +|+..++. |..| +...|...+....+ .|++++|.++|++..+. . .
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 6533 34566666654 67766654 4433 46677777776655 68899999999998752 1 1
Q ss_pred HHHHHHHHHH-------------HHcCChHHHHHHHHHHH------HcC---CCCCH--------HHHHHHHHHHHhc--
Q 003457 182 NVWTTMISGY-------------AQSFRANEALMLFDQML------MEG---FEPNS--------VTLASVLSACAQS-- 229 (818)
Q Consensus 182 ~~~~~Li~~~-------------~~~g~~~~A~~l~~~m~------~~g---~~pd~--------~t~~~ll~~~~~~-- 229 (818)
..|....... .+.+++++|..+++++. +.. ++|+. ..|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 2333222211 12356777877776632 111 34442 3444444332221
Q ss_pred --CCh----hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-------CCCHH-------HHHHHHhhCCC---C-ChhhH
Q 003457 230 --GCL----ELGEKVHVFVKMRGFEMGAILGTALVHMYTK-------NGALA-------KAKALFDSMPE---R-NIATW 285 (818)
Q Consensus 230 --g~~----~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~-------~g~~~-------~A~~~f~~m~~---~-d~~~~ 285 (818)
++. +.+..+|+++++.. +.+..++..++..+.+ .|+++ +|..+|++..+ | +...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 222 36778899998874 5678888888888875 78877 89999998874 3 57789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-
Q 003457 286 NAMISGLASHGHAEEALDLFRKLEKEQIVPN-D-ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDL- 362 (818)
Q Consensus 286 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~-~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~- 362 (818)
..++..+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|.++|++..+. .+.+...|...+..
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHH
Confidence 99999999999999999999999986 443 3 57888888888999999999999998864 22234444433333
Q ss_pred HHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHHHHHHhhchH
Q 003457 363 LGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG----VYVVLSNMYAEAESMK 436 (818)
Q Consensus 363 ~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~----~y~~L~~~l~~~G~~~ 436 (818)
+...|++++|.++|+++ ...| +...|..++..+.+.|+.++|..+|+++++..|.+++ .|..++....+.|+.+
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 34699999999999987 3335 5889999999999999999999999999998877665 7888888888999999
Q ss_pred HHHHHHHHHH
Q 003457 437 MQLEILLVQV 446 (818)
Q Consensus 437 eA~~l~~~~~ 446 (818)
++.++.+...
T Consensus 481 ~~~~~~~r~~ 490 (530)
T 2ooe_A 481 SILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999776663
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.74 E-value=3.3e-16 Score=167.39 Aligned_cols=270 Identities=9% Similarity=0.018 Sum_probs=188.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003457 153 VNCLVRCYSVSSDLNNARQVFDEIRN---RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQS 229 (818)
Q Consensus 153 ~~~Li~~y~~~g~~~~A~~l~~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 229 (818)
+..+...+.+.|++++|.++|+++.+ .+...|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 34455556666666666666666543 234455566666666666666666666665543 33455555555566666
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHH-HH-HHHHcCCHHHHHHHHHH
Q 003457 230 GCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAM-IS-GLASHGHAEEALDLFRK 307 (818)
Q Consensus 230 g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~L-i~-~~~~~g~~~~A~~l~~~ 307 (818)
|++++|.+.++++.+.. +.+...+..+.... ++......+ .. .+...|++++|+..+++
T Consensus 103 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------CCTTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 66666666666655542 11111111110000 000111112 22 36778899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CH
Q 003457 308 LEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DV 385 (818)
Q Consensus 308 m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~ 385 (818)
+.+.... +...+..+...+.+.|++++|...++++.+. .+.+...+..+...|.+.|++++|++.|+++ ...| +.
T Consensus 164 ~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 240 (327)
T 3cv0_A 164 ALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240 (327)
T ss_dssp HHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 9887433 6788889999999999999999999999876 4566889999999999999999999999987 2334 58
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------CcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIALEPN------------NHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~------------~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
..+..+...+.+.|++++|++.+++++++.|+ +...+..++.++.+.|++++|.++++..
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999 7889999999999999999999976543
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=2.6e-16 Score=171.66 Aligned_cols=296 Identities=8% Similarity=-0.044 Sum_probs=158.9
Q ss_pred CCChhHHHH-HHHHHHHcCC---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH
Q 003457 93 SLNPDKAIF-LYMNMRRTGF---APNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNN 168 (818)
Q Consensus 93 ~g~~~~Al~-lf~~m~~~g~---~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~ 168 (818)
.|++++|++ .|++..+... ..+...+..+...+.+.|++++|...++++++..+ .+...+..+..+|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 355666665 5554433211 11233455566666666666666666666666532 245566666666666666666
Q ss_pred HHHHHHHhhc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003457 169 ARQVFDEIRN---RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 169 A~~l~~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~ 245 (818)
|.+.|+++.+ .+..++..+...|...|++++|++.|+++.+.. +.+...+..+... .. ..
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~-------~~-- 179 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG-------GA-- 179 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-------------------------
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh-------hh--
Confidence 6666665543 244566666666666666666766666666543 1111111110000 00 00
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--C---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003457 246 GFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--R---NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITF 320 (818)
Q Consensus 246 g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 320 (818)
.+ ......+...+ ..|++++|.+.|+++.+ | +...+..+...|.+.|++++|+..|+++.+.. +.+...+
T Consensus 180 --~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 254 (368)
T 1fch_A 180 --GL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLW 254 (368)
T ss_dssp ---------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred --cc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHH
Confidence 00 00001122222 55555566555555542 1 34556666666666666666766666666542 2245566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC------------CHHH
Q 003457 321 VGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP------------DVVM 387 (818)
Q Consensus 321 ~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p------------d~~~ 387 (818)
..+..++.+.|++++|...++++.+. .+.+...+..+..+|.+.|++++|.+.|+++. ..| ...+
T Consensus 255 ~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 255 NKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 66666677777777777777776654 34456666677777777777777777776651 111 1566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 388 WGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 388 ~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
|..+..+|...|++++|..++++.++
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 77777777777777777777655443
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=9.1e-17 Score=175.52 Aligned_cols=287 Identities=11% Similarity=0.063 Sum_probs=137.7
Q ss_pred hcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 003457 60 SSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHT 139 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~ 139 (818)
.+.|++++|.++++++..| ..|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..+++
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5679999999999999665 48999999999999999999999653 578899999999999999999999888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 003457 140 HVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTL 219 (818)
Q Consensus 140 ~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 219 (818)
..++. .++..+.+.|+.+|.+.|++++++++++ .++..+|+.++..|...|++++|..+|.++ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 87774 4457788999999999999999998885 467779999999999999999999999987 368
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHH
Q 003457 220 ASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAE 299 (818)
Q Consensus 220 ~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~ 299 (818)
..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 89999999999999999999988 267899999999999999999988777765 44444557889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHcCCHHH
Q 003457 300 EALDLFRKLEKEQIVPNDITFVGVLSACCHA--GFIDVGRQIFGSMKRVYGIEP------KIEHYGCMVDLLGRCGKVLE 371 (818)
Q Consensus 300 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--g~~~~A~~~~~~m~~~~g~~p------~~~~~~~Li~~~~~~g~~~~ 371 (818)
+|+.+++...... +-....|+.+..+|++- +++.+.++.|.. +-+++| +...|..++-.|...++++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999987654 44566777776666654 344444444432 213333 46678899999999999999
Q ss_pred HHHHHHHc
Q 003457 372 AEELIKRM 379 (818)
Q Consensus 372 A~~~~~~m 379 (818)
|....-+-
T Consensus 301 A~~tm~~h 308 (449)
T 1b89_A 301 AIITMMNH 308 (449)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 88765544
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=6e-15 Score=156.45 Aligned_cols=269 Identities=8% Similarity=-0.009 Sum_probs=220.1
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCHH----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 003457 158 RCYSVSSDLNNARQVFDEIRNRTLN----VWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLE 233 (818)
Q Consensus 158 ~~y~~~g~~~~A~~l~~~m~~~d~~----~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~ 233 (818)
+-....|++..|++.+++....++. ....+.++|...|++++|+..++.. -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 3445688999999998887665433 4566788999999999999877552 3667778888888999999999
Q ss_pred HHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003457 234 LGEKVHVFVKMRGF-EMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQ 312 (818)
Q Consensus 234 ~A~~i~~~~~~~g~-~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 312 (818)
+|.+.++++...+. +.+...+..+..+|.+.|++++|++.|++ ..+...+..++..|.+.|++++|++.|+++.+..
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 99999999988764 44667778888999999999999999998 5678899999999999999999999999999874
Q ss_pred CCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHH
Q 003457 313 IVPNDITF---VGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVM 387 (818)
Q Consensus 313 ~~pd~~t~---~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~ 387 (818)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|++.|+++ ...| +..+
T Consensus 161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 443211 12233444558999999999999987 6778999999999999999999999999997 3445 6889
Q ss_pred HHHHHHHHHHcCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 388 WGALLAACKNHGNIEV-AERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 388 ~~~Li~a~~~~g~~~~-A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
+..++..+...|+.++ +.++++++++++|+++.+. ++..+.+.+++|..
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHH
Confidence 9999999999999876 6789999999999977544 46677778887765
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=5.4e-16 Score=164.53 Aligned_cols=244 Identities=11% Similarity=-0.002 Sum_probs=199.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Q 003457 188 ISGYAQSFRANEALMLFDQMLMEGFEPNS--VTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNG 265 (818)
Q Consensus 188 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g 265 (818)
++-....|++++|+..+++.... .|+. .....+.++|...|+++.|...++. . -+|+...+..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 34556789999999999886543 3443 3556678999999999999876644 2 3667788889999999999
Q ss_pred CHHHHHHHHhhCCC----C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 266 ALAKAKALFDSMPE----R-NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIF 340 (818)
Q Consensus 266 ~~~~A~~~f~~m~~----~-d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~ 340 (818)
+.++|.+.++++.. | +...+..+...|.+.|++++|++.+++ ..+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998642 3 566788888999999999999999987 457788889999999999999999999
Q ss_pred HHHHHHhCCCCCHH-H--HHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003457 341 GSMKRVYGIEPKIE-H--YGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALE 415 (818)
Q Consensus 341 ~~m~~~~g~~p~~~-~--~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~ 415 (818)
+++.+. .|+.. . ...++..+...|++++|+++|+++. ...+...++.+..++.+.|++++|++.|+++++++
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999876 35432 1 1233344555699999999999983 33478899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHhhchHHH-HHHHHHHH
Q 003457 416 PNNHGVYVVLSNMYAEAESMKMQ-LEILLVQV 446 (818)
Q Consensus 416 P~~~~~y~~L~~~l~~~G~~~eA-~~l~~~~~ 446 (818)
|+++.++..++.++...|+.+++ .++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999875 56776664
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1e-14 Score=165.05 Aligned_cols=365 Identities=10% Similarity=-0.051 Sum_probs=245.8
Q ss_pred CChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC-----------C-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc---
Q 003457 45 QDHFAASRLLAFCALSSSGDLSYATRLFNSIQ-----------S-PNHFMWNTLIRAQASSLNPDKAIFLYMNMRRT--- 109 (818)
Q Consensus 45 ~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~-----------~-p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~--- 109 (818)
.....||.|-.+| ...|++++|++.|++.. . ....+|+.+...|...|++++|+..|++..+.
T Consensus 49 ~~a~~yn~Lg~~~--~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 49 FKATMCNLLAYLK--HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp -CCHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3456788887777 89999999999998753 1 34678999999999999999999999887652
Q ss_pred --C-CCC-CHHHHHHHHHHHHc--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhCCChHHHHHHHHHhhc--
Q 003457 110 --G-FAP-NQHTFTFVLKACSN--VRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRC---YSVSSDLNNARQVFDEIRN-- 178 (818)
Q Consensus 110 --g-~~p-d~~ty~~ll~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~---y~~~g~~~~A~~l~~~m~~-- 178 (818)
+ ..+ ...++..+..++.. .+++++|...|++.++..+. +...+..+..+ +...++.++|++.|++..+
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1 111 34566666555544 45789999999999987543 55555555554 3456778889888887654
Q ss_pred -CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHH
Q 003457 179 -RTLNVWTTMISGYAQ----SFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAIL 253 (818)
Q Consensus 179 -~d~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~ 253 (818)
.+...+..+...+.. .+++++|.+.+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 355666666655544 467889999999998875 5677888899999999999999999999999885 556677
Q ss_pred HHHHHHHHHhC-------------------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 003457 254 GTALVHMYTKN-------------------GALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKE 311 (818)
Q Consensus 254 ~~~Li~~~~~~-------------------g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~ 311 (818)
+..+..+|... +.++.|...|++..+ .+...+..+...|...|++++|+..|++..+.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 77777666432 235667777776653 45668899999999999999999999999987
Q ss_pred CCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHH
Q 003457 312 QIVPNDI--TFVGVLS-ACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVV 386 (818)
Q Consensus 312 g~~pd~~--t~~~ll~-a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~ 386 (818)
...+... .+..+.. .....|++++|+..|++..+ +.|+....... ...+.+++++. ...| +..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTT
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHH
Confidence 5443321 2233332 34568999999999999886 45654332222 23334444444 2234 678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 003457 387 MWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLS 426 (818)
Q Consensus 387 ~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~ 426 (818)
+|..|...|...|++++|++.|+++++++|.++.+..-+|
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 9999999999999999999999999999999888776655
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=1.9e-13 Score=164.88 Aligned_cols=344 Identities=14% Similarity=0.127 Sum_probs=265.1
Q ss_pred HHHHHHhhhhcCCCHHHHHHHHhhcC-CC-----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 51 SRLLAFCALSSSGDLSYATRLFNSIQ-SP-----NHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKA 124 (818)
Q Consensus 51 ~~Ll~~~a~~k~g~~e~A~~lf~~~~-~p-----~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~ 124 (818)
...+..| ...|...+|+++++++. ++ +...-+.|+....+. +..+..+..++.... + ..-+...
T Consensus 989 s~~vKaf--~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 989 SVTVKAF--MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred HHHHHHH--HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 4445555 56777777777777765 22 234555566655555 445555555544321 1 2336677
Q ss_pred HHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHH
Q 003457 125 CSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLF 204 (818)
Q Consensus 125 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~ 204 (818)
|...|.+++|..+|++.. ......+.++ -..+++++|.++.+++ .+..+|..+..++.+.|++++|++.|
T Consensus 1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred HHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 788889999999888752 1222223332 2778899999988877 34678999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhh
Q 003457 205 DQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIAT 284 (818)
Q Consensus 205 ~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~ 284 (818)
.+. -|...|..++.+|.+.|++++|.+++...++.. ++..+.+.++.+|++.+++++...+. ..++...
T Consensus 1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAH 1197 (1630)
T ss_pred Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHH
Confidence 764 477888999999999999999999999988764 34444456999999999998655443 4556777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003457 285 WNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLG 364 (818)
Q Consensus 285 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~ 364 (818)
|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..+|.
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACV 1261 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHh
Confidence 888999999999999999999985 37889999999999999999999875 35689999999999
Q ss_pred HcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HhhchHHHHHHH
Q 003457 365 RCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA--EAESMKMQLEIL 442 (818)
Q Consensus 365 ~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~--~~G~~~eA~~l~ 442 (818)
..|++..|........ .+...+..++..|.+.|.+++|+.+++++++++|.+...+..|+.+|. +-++..|+.+++
T Consensus 1262 e~~Ef~LA~~cgl~Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1262 DGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred hhhHHHHHHHHHHhhh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999887643 456667789999999999999999999999999999999988888887 457888888865
Q ss_pred H
Q 003457 443 L 443 (818)
Q Consensus 443 ~ 443 (818)
.
T Consensus 1340 ~ 1340 (1630)
T 1xi4_A 1340 W 1340 (1630)
T ss_pred H
Confidence 3
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=1.3e-15 Score=166.41 Aligned_cols=255 Identities=10% Similarity=-0.038 Sum_probs=165.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003457 153 VNCLVRCYSVSSDLNNARQVFDEIRN---RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQS 229 (818)
Q Consensus 153 ~~~Li~~y~~~g~~~~A~~l~~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 229 (818)
+..+...+.+.|++++|.+.|+++.+ .+..+|..+...|.+.|++++|++.|+++++.. +.+...+..+..++...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 44444555555555555555555443 234455555555555555555555555555542 33445555555555555
Q ss_pred CChhHHHHHHHHHHHcCCC---------CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--C---ChhhHHHHHHHHHHc
Q 003457 230 GCLELGEKVHVFVKMRGFE---------MGAILGTALVHMYTKNGALAKAKALFDSMPE--R---NIATWNAMISGLASH 295 (818)
Q Consensus 230 g~~~~A~~i~~~~~~~g~~---------~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~---d~~~~~~Li~~~~~~ 295 (818)
|++++|...++++.+.... .....+..+...|.+.|++++|.+.|+++.+ | +...|..+...|.+.
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 5555555555555543210 0112233456777788888888888877764 2 567888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003457 296 GHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEEL 375 (818)
Q Consensus 296 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~ 375 (818)
|++++|+..|+++.+..+ .+..++..+..+|.+.|++++|+..|+++.+. .+.+...+..+..+|.+.|++++|.+.
T Consensus 227 g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~ 303 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSN 303 (365)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999988887643 36778888888899999999999999988875 445588888889999999999999998
Q ss_pred HHHcC-CCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 376 IKRMV-WKP-------------DVVMWGALLAACKNHGNIEVAERVVKEI 411 (818)
Q Consensus 376 ~~~m~-~~p-------------d~~~~~~Li~a~~~~g~~~~A~~~~~~~ 411 (818)
|+++. ..| +...|..+..++...|+.+.+..+.++.
T Consensus 304 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 304 FLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 88872 111 2578899999999999999888877653
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=2.1e-13 Score=157.35 Aligned_cols=399 Identities=11% Similarity=0.082 Sum_probs=291.7
Q ss_pred CCChhHHHHHHHHh--cCchHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC--CCHHHHHHHH
Q 003457 12 PLPIPPLSLLADKC--KSMHQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQS--PNHFMWNTLI 87 (818)
Q Consensus 12 ~p~~~tl~~ll~~c--~~~~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~--p~~~~yn~Li 87 (818)
|-|...+..++..+ +....++.+++.+++. +..+...|..++.++ .+.|++++|+++|+++.. |+...|...+
T Consensus 10 P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~--~~~~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIREAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAE--IKAKNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 33556666666642 4455667888887764 445778899999999 899999999999999874 7888888887
Q ss_pred HHH-HhCCChhHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHcCCCCCHH
Q 003457 88 RAQ-ASSLNPDKAIF----LYMNMRRT-GFAP-NQHTFTFVLKACSN---------VRSLNCCKQIHTHVSKSGLDLDLH 151 (818)
Q Consensus 88 ~~~-~~~g~~~~Al~----lf~~m~~~-g~~p-d~~ty~~ll~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~~ 151 (818)
... ...|+.++|.+ +|++.... |..| +...|...+....+ .|+++.|..+|++.++........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 644 35677777765 77776653 5444 45567776666544 688999999999998842121123
Q ss_pred HHHHHHHHH-------------HhCCChHHHHHHHHHh------hc-------CC--------HHHHHHHHHHHHHc---
Q 003457 152 VVNCLVRCY-------------SVSSDLNNARQVFDEI------RN-------RT--------LNVWTTMISGYAQS--- 194 (818)
Q Consensus 152 ~~~~Li~~y-------------~~~g~~~~A~~l~~~m------~~-------~d--------~~~~~~Li~~~~~~--- 194 (818)
.|....... .+.++++.|..++.++ .+ ++ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 444332211 1345677787777652 11 11 23566555433332
Q ss_pred -CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCChh-------HHHHHHHHHHHcCCCCcHHHHH
Q 003457 195 -FRA----NEALMLFDQMLMEGFEPNSVTLASVLSACAQ-------SGCLE-------LGEKVHVFVKMRGFEMGAILGT 255 (818)
Q Consensus 195 -g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~-------~g~~~-------~A~~i~~~~~~~g~~~~~~~~~ 255 (818)
++. +++..+|++++... +-+...|...+..+.+ .|+++ +|..++++.++.-.+.+...+.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 222 47888999998763 5577788888877765 78987 8999999999732356788999
Q ss_pred HHHHHHHhCCCHHHHHHHHhhCCC--C-Ch-hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHc
Q 003457 256 ALVHMYTKNGALAKAKALFDSMPE--R-NI-ATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLS-ACCHA 330 (818)
Q Consensus 256 ~Li~~~~~~g~~~~A~~~f~~m~~--~-d~-~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~ 330 (818)
.++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|++++|.++|++..+.... +...+..... .+...
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHc
Confidence 999999999999999999998874 3 33 48999999999999999999999999886322 3333333222 23468
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-C---CCC--HHHHHHHHHHHHHcCCHHHH
Q 003457 331 GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-W---KPD--VVMWGALLAACKNHGNIEVA 404 (818)
Q Consensus 331 g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~---~pd--~~~~~~Li~a~~~~g~~~~A 404 (818)
|+.++|..+|++..+. .+.+...|..++..+.+.|+.++|..+|+++. . .|+ ...|...+......|+.+.+
T Consensus 405 ~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~ 482 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 482 (530)
T ss_dssp CCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred CChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999886 45568999999999999999999999999983 1 232 45888888888899999999
Q ss_pred HHHHHHHHhcCCC
Q 003457 405 ERVVKEIIALEPN 417 (818)
Q Consensus 405 ~~~~~~~~~~~P~ 417 (818)
..+++++.+..|+
T Consensus 483 ~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 483 LKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHCch
Confidence 9999999999885
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1.9e-15 Score=161.35 Aligned_cols=276 Identities=8% Similarity=-0.009 Sum_probs=178.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc---CCHHHHHHHHHH
Q 003457 114 NQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRN---RTLNVWTTMISG 190 (818)
Q Consensus 114 d~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~---~d~~~~~~Li~~ 190 (818)
+...+..+...+...|++++|..+++++++..+. +...+..+..+|.+.|++++|.+.|+++.+ .+...+..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 3345677788899999999999999999987644 778889999999999999999999999875 366789999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHH--HHHhCCCHH
Q 003457 191 YAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVH--MYTKNGALA 268 (818)
Q Consensus 191 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~--~~~~~g~~~ 268 (818)
+...|++++|++.++++.+.. +.+...+..+...+ ++......+.. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 999999999999999998864 22222232221000 00000011111 133444555
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003457 269 KAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKR 345 (818)
Q Consensus 269 ~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~ 345 (818)
+|.+.++++.+ .+...+..+...|...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+
T Consensus 156 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555554432 2445556666666666666666666666665432 2455666666666667777777777766665
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 346 VYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP-------------DVVMWGALLAACKNHGNIEVAERVVKEI 411 (818)
Q Consensus 346 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p-------------d~~~~~~Li~a~~~~g~~~~A~~~~~~~ 411 (818)
. .+.+...+..+...|.+.|++++|.+.|+++. ..| +...|..+..++.+.|++++|..+++++
T Consensus 235 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 I--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred c--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4 33456666666777777777777777776651 122 2556666777777777777777777665
Q ss_pred HhcCC
Q 003457 412 IALEP 416 (818)
Q Consensus 412 ~~~~P 416 (818)
++..|
T Consensus 313 l~~~~ 317 (327)
T 3cv0_A 313 VEPFA 317 (327)
T ss_dssp SHHHH
T ss_pred HHhcc
Confidence 55433
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=1.4e-16 Score=174.09 Aligned_cols=250 Identities=16% Similarity=0.170 Sum_probs=121.9
Q ss_pred hCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 003457 162 VSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVF 241 (818)
Q Consensus 162 ~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~ 241 (818)
+.|++++|.++++++..+ .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.++++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999999554 49999999999999999999999763 5777999999999999999999998888
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003457 242 VKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFV 321 (818)
Q Consensus 242 ~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 321 (818)
.++. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8775 4557788899999999999999888876 377789999999999999999999999977 2688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 003457 322 GVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNI 401 (818)
Q Consensus 322 ~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~ 401 (818)
.++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+...|+. ...++..|.+.|++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHHHHCCCH
Confidence 9999999999999999999986 37899999999999999999998877766544443 45688899999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHH--HhhchHHHHHHH
Q 003457 402 EVAERVVKEIIALEPNNHGVYVVLSNMYA--EAESMKMQLEIL 442 (818)
Q Consensus 402 ~~A~~~~~~~~~~~P~~~~~y~~L~~~l~--~~G~~~eA~~l~ 442 (818)
++|+.++++++.+++.+...+..|+.+|. +-+++.|+++++
T Consensus 224 eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 224 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999999998 567888888865
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=6.9e-13 Score=160.01 Aligned_cols=365 Identities=11% Similarity=0.094 Sum_probs=279.1
Q ss_pred chHHHHHHHHHHHhC--CCCChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 003457 28 MHQLKQIHAQMIISS--RIQDHFAASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMN 105 (818)
Q Consensus 28 ~~~~~~~~~~~~~~g--~~~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~ 105 (818)
..++..+++.++..+ +.-+....+.|+... .+. +..+..++.++...-+ ...+...+...|.+++|..+|++
T Consensus 1001 p~EaieLLEKivl~~s~fs~n~~LqnlLi~tA--Ika-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkK 1074 (1630)
T 1xi4_A 1001 PNELIELLEKIVLDNSVFSEHRNLQNLLILTA--IKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRK 1074 (1630)
T ss_pred HHHHHHHHHHHHcCCCcccccHHHHHHHHHHH--HHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHH
Confidence 334455555555221 123456677766555 333 4455555554444333 34477888899999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHH
Q 003457 106 MRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWT 185 (818)
Q Consensus 106 m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~ 185 (818)
... .......++. ..+++++|.++.+++ -+..+|..+..++.+.|++++|.+.|.+. .|...|.
T Consensus 1075 a~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~ 1138 (1630)
T 1xi4_A 1075 FDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYM 1138 (1630)
T ss_pred cCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHH
Confidence 631 2223333333 678899999988765 25778999999999999999999999664 7888999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC
Q 003457 186 TMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNG 265 (818)
Q Consensus 186 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g 265 (818)
.++..+.+.|++++|.+.|...++.. ++......++.+|++.+++++...+. + .++...+..+.+.|...|
T Consensus 1139 eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1139 EVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999888764 33333335888999999888644442 2 345566667999999999
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003457 266 ALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKR 345 (818)
Q Consensus 266 ~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~ 345 (818)
++++|..+|..+ ..|..+...|.+.|++++|++.+++. .+..+|..+..+|...|++..|..+...
T Consensus 1210 ~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~--- 1275 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH--- 1275 (1630)
T ss_pred CHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh---
Confidence 999999999986 58999999999999999999999977 2568899999999999999999987654
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhcCC-----
Q 003457 346 VYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKN--HGNIEVAERVVKEIIALEP----- 416 (818)
Q Consensus 346 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~--~g~~~~A~~~~~~~~~~~P----- 416 (818)
+..+...+..++..|.+.|.+++|+++++.. ...+ ....|.-|...|.+ -++..++++.|..-..+.|
T Consensus 1276 ---Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~ 1352 (1630)
T 1xi4_A 1276 ---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA 1352 (1630)
T ss_pred ---hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHH
Confidence 3346677789999999999999999999887 3333 35567667766665 5577888888887777766
Q ss_pred CCcchHHHHHHHHHHhhchHHHHH
Q 003457 417 NNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 417 ~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
++...|..++.+|.+.|+++.|..
T Consensus 1353 e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1353 EQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHH
Confidence 678899999999999999999985
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=9.7e-15 Score=150.12 Aligned_cols=225 Identities=12% Similarity=0.006 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 003457 183 VWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYT 262 (818)
Q Consensus 183 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~ 262 (818)
.|..+...+...|++++|+..|+++++.. .+...+..+..++...|++++|...++++.+......
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~------------ 72 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMR------------ 72 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccc------------
Confidence 45556666666666666666666666554 4555555555666666666666666655554321000
Q ss_pred hCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 263 KNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGS 342 (818)
Q Consensus 263 ~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~ 342 (818)
.+.. .....|..+...|...|++++|+..|+++.+. .|+. ..+.+.|++++|...+++
T Consensus 73 --~~~~-----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 73 --ADYK-----------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEA 130 (258)
T ss_dssp --CCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHH
T ss_pred --cchH-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHH
Confidence 0000 00345666677777777777777777777664 2332 335556677777777777
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 343 MKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-W-KPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 343 m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~-~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
+.+. .+.+...+..+...|...|++++|++.|+++. . ..+...+..+...+.+.|++++|++.++++++..|+++.
T Consensus 131 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 208 (258)
T 3uq3_A 131 EAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208 (258)
T ss_dssp HHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH
Confidence 6653 33345667777777788888888888887772 2 235677777888888888888888888888888888888
Q ss_pred hHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 421 VYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 421 ~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.+..++.+|.+.|++++|.+.++..
T Consensus 209 ~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 209 AYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888888888888888866555
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=2.6e-14 Score=146.84 Aligned_cols=235 Identities=9% Similarity=-0.024 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhc--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 003457 150 LHVVNCLVRCYSVSSDLNNARQVFDEIRN--RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGF--EPN----SVTLAS 221 (818)
Q Consensus 150 ~~~~~~Li~~y~~~g~~~~A~~l~~~m~~--~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~--~pd----~~t~~~ 221 (818)
...+..+...+...|++++|.+.|++..+ .+...|..+...+...|++++|++.++++.+... .++ ...+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45788899999999999999999998765 5677899999999999999999999999887531 112 466777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHH
Q 003457 222 VLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEA 301 (818)
Q Consensus 222 ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A 301 (818)
+...+...|++++|...++++.+.. ++. ..+.+.|++++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--------------------------------------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA--------------------------------------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH--------------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh--------------------------------------HHHHHHhHHHHH
Confidence 7777788888888888888777653 221 224444566667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-
Q 003457 302 LDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV- 380 (818)
Q Consensus 302 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~- 380 (818)
+..++++.+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|++.|+++.
T Consensus 125 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 125 LKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777766665421 13455666677777777788887777777765 44567777788888888888888888887772
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCCcchHHHHHH
Q 003457 381 WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALE------PNNHGVYVVLSN 427 (818)
Q Consensus 381 ~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~------P~~~~~y~~L~~ 427 (818)
..| +...+..+...+.+.|++++|.+.+++++++. |++...+..+..
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 233 47788888888889999999999999998888 776666665554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=2.2e-14 Score=144.99 Aligned_cols=195 Identities=12% Similarity=0.035 Sum_probs=155.1
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 003457 248 EMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVL 324 (818)
Q Consensus 248 ~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 324 (818)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+..+. +...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 45566777788888888888888888887664 35678888888899999999999999998887433 567788888
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCCHHHHHHHH
Q 003457 325 SACCHA-----------GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPDVVMWGALL 392 (818)
Q Consensus 325 ~a~~~~-----------g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd~~~~~~Li 392 (818)
.++... |++++|+..+++..+. .+.+...+..+..+|...|++++|++.|+++. ...+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999876 45568889999999999999999999999882 227788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 393 AACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 393 ~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.+|...|++++|+..|+++++++|+++..+..++.++.+.|++++|++.++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999977655
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1.3e-13 Score=143.29 Aligned_cols=240 Identities=14% Similarity=-0.027 Sum_probs=172.6
Q ss_pred cCChHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHH
Q 003457 194 SFRANEALMLFDQMLMEGF---EPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKA 270 (818)
Q Consensus 194 ~g~~~~A~~l~~~m~~~g~---~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A 270 (818)
.+++++|+..|+++.+... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..+|.+.|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 3556666666666665421 1123455566666666777777777777666654 34566666777777777777777
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 003457 271 KALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVY 347 (818)
Q Consensus 271 ~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~ 347 (818)
.+.|+++.+ .+...|..+...|.+.|++++|+..|+++.+.. |+.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 777776653 356788888889999999999999999998863 44444444555567779999999999888776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC-CCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 003457 348 GIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVW-KPD-----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGV 421 (818)
Q Consensus 348 g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-~pd-----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~ 421 (818)
.+++...+ .++..+...++.++|++.++++.. .|+ ...+..+...|.+.|++++|+..|+++++++|++..
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 250 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV- 250 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence 44444444 367778888889999999998842 222 578889999999999999999999999999997644
Q ss_pred HHHHHHHHHHhhchHHHHHHH
Q 003457 422 YVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 422 y~~L~~~l~~~G~~~eA~~l~ 442 (818)
..+.++.+.|++++|++.+
T Consensus 251 --~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 --EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --HHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhhHHHH
Confidence 4467888999999998743
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=9.2e-14 Score=144.53 Aligned_cols=245 Identities=10% Similarity=-0.006 Sum_probs=130.9
Q ss_pred HHHHHHHHhCCChHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHh
Q 003457 154 NCLVRCYSVSSDLNNARQVFDEIRNR---TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPN--SVTLASVLSACAQ 228 (818)
Q Consensus 154 ~~Li~~y~~~g~~~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~~~~~ 228 (818)
......+...|++++|++.|+++.+. +...+..+...|...|++++|++.++++.+....++ ...|..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34445555666666666666655432 233555555566666666666666666554221111 2234455555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 229 SGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKL 308 (818)
Q Consensus 229 ~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m 308 (818)
.|++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.|++..
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al------------------------------ 135 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI------------------------------ 135 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC------------------------------
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHh------------------------------
Confidence 555555555555555543 2233444444555555555555555554444
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHcC----C
Q 003457 309 EKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGK---VLEAEELIKRMV----W 381 (818)
Q Consensus 309 ~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~---~~~A~~~~~~m~----~ 381 (818)
+.. +.+...+..+...+...+++++|...|+++.+. .+.+...+..+..++...|+ +++|...|+++. .
T Consensus 136 -~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 211 (272)
T 3u4t_A 136 -RPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP 211 (272)
T ss_dssp -CSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG
T ss_pred -hcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc
Confidence 331 112333333331222233555555555555543 22334455555555555555 444555554441 1
Q ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 382 KPD------VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 382 ~pd------~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
.|+ ...|..+...|.+.|++++|++.++++++++|+++.++..+..+....+
T Consensus 212 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 212 GGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp GGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred ccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 122 2567778888999999999999999999999999998888877766544
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=9.4e-14 Score=156.88 Aligned_cols=368 Identities=9% Similarity=-0.003 Sum_probs=251.3
Q ss_pred hcCCCHHHHHHHHhhcCC-CCHHHHHHHHHHHHhCCCh---hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-----C
Q 003457 60 SSSGDLSYATRLFNSIQS-PNHFMWNTLIRAQASSLNP---DKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVR-----S 130 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~~-p~~~~yn~Li~~~~~~g~~---~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g-----~ 130 (818)
.+.|++++|++.|++..+ .+...+..|...|...|+. ++|+..|++..+. +...+..+...+...+ +
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcC
Confidence 678999999999998763 3555666677777777888 8999999988754 5555666666454444 7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH---HHHHHHHhhc-CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 003457 131 LNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNN---ARQVFDEIRN-RTLNVWTTMISGYAQSFRANEALMLFDQ 206 (818)
Q Consensus 131 ~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~---A~~l~~~m~~-~d~~~~~~Li~~~~~~g~~~~A~~l~~~ 206 (818)
.++|...+++..+.|.. ..+..|..+|...+..++ +.+.+....+ .+...+..|...|...+.++++......
T Consensus 90 ~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 90 HHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 88999999999987743 256667777877665444 4444444432 3667888899999988866665555433
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC----CCHHHHHHHHhhCCC
Q 003457 207 MLMEGFEPNSVTLASVLSACAQSG---CLELGEKVHVFVKMRGFEMGAILGTALVHMYTKN----GALAKAKALFDSMPE 279 (818)
Q Consensus 207 m~~~g~~pd~~t~~~ll~~~~~~g---~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~----g~~~~A~~~f~~m~~ 279 (818)
+.+.-...+...+..+...|...| +.++|.+.|++..+.| +++...+..|..+|... +++++|.+.|++...
T Consensus 167 ~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~ 245 (452)
T 3e4b_A 167 ICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAP 245 (452)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGG
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcC
Confidence 332212223337778888888899 8999999999999987 55666556788888665 799999999998884
Q ss_pred CChhhHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHhCCCC
Q 003457 280 RNIATWNAMISG-L--ASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAG-----FIDVGRQIFGSMKRVYGIEP 351 (818)
Q Consensus 280 ~d~~~~~~Li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-----~~~~A~~~~~~m~~~~g~~p 351 (818)
.+...+..|... | ...+++++|+..|++..+.| +...+..|...|. .| ++++|...|++.. +.
T Consensus 246 g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g 316 (452)
T 3e4b_A 246 GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GR 316 (452)
T ss_dssp GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TT
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CC
Confidence 467788888887 4 46899999999999999876 6777888888777 55 9999999999865 45
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcchHH
Q 003457 352 KIEHYGCMVDLLGR----CGKVLEAEELIKRMVWKPDVVMWGALLAACKN----HGNIEVAERVVKEIIALEPNNHGVYV 423 (818)
Q Consensus 352 ~~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~----~g~~~~A~~~~~~~~~~~P~~~~~y~ 423 (818)
+...+..|..+|.. ..++++|.+.|++....-+......|...|.. ..+.++|..+|+++.+.++.. +..
T Consensus 317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~ 394 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--AND 394 (452)
T ss_dssp CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHH
T ss_pred CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHH
Confidence 67888888888876 44999999999998544556667777777764 458999999999999877543 334
Q ss_pred HHHHHH--HHhhchHHHHHHHHHHH
Q 003457 424 VLSNMY--AEAESMKMQLEILLVQV 446 (818)
Q Consensus 424 ~L~~~l--~~~G~~~eA~~l~~~~~ 446 (818)
.+..+. ...++.++|.++.+.+.
T Consensus 395 ~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 395 LATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 444433 34567777877776663
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=2.2e-13 Score=149.73 Aligned_cols=246 Identities=9% Similarity=0.020 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 003457 182 NVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGC-LELGEKVHVFVKMRGFEMGAILGTALVHM 260 (818)
Q Consensus 182 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~-~~~A~~i~~~~~~~g~~~~~~~~~~Li~~ 260 (818)
.+|+.+...+.+.|++++|++.|+++++.. +-+...|..+..++...|+ +++|...++++++.. +.+...+..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 467777777888888888888888887764 4456677777778888886 888888888888775 5567777778888
Q ss_pred HHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHH
Q 003457 261 YTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCH-AGFIDVG 336 (818)
Q Consensus 261 ~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~g~~~~A 336 (818)
|.+.|++++|+..|+++.+ .+...|..+..++.+.|++++|+..|+++++..+. +...|+.+..++.+ .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 8888888888888887764 46778888888999999999999999999987544 67888888888888 5554777
Q ss_pred -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcC---------
Q 003457 337 -----RQIFGSMKRVYGIEPKIEHYGCMVDLLGRCG--KVLEAEELIKRMVWKP-DVVMWGALLAACKNHG--------- 399 (818)
Q Consensus 337 -----~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g--~~~~A~~~~~~m~~~p-d~~~~~~Li~a~~~~g--------- 399 (818)
+..+++.++. .+.+...|..+..+|.+.| ++++|++.++++...| +...+..++..|.+.|
T Consensus 255 ~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 4788888875 4556788888888888888 6899999998885445 4778888888888764
Q ss_pred CHHHHHHHHHHH-HhcCCCCcchHHHHHHHHHHh
Q 003457 400 NIEVAERVVKEI-IALEPNNHGVYVVLSNMYAEA 432 (818)
Q Consensus 400 ~~~~A~~~~~~~-~~~~P~~~~~y~~L~~~l~~~ 432 (818)
.+++|+++|+++ .+++|.....|..++..+...
T Consensus 333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 899999999998888777654
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=5.5e-14 Score=143.31 Aligned_cols=192 Identities=16% Similarity=0.144 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 252 ILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACC 328 (818)
Q Consensus 252 ~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 328 (818)
..+..+...+.+.|++++|...|+++.+ .+...+..+...|...|++++|+..++++.+... .+...+..+...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHH
Confidence 3444555566666666666666665543 3455666667777777777777777777766532 25566666777777
Q ss_pred HcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCHHHHHH
Q 003457 329 HAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-W-KPDVVMWGALLAACKNHGNIEVAER 406 (818)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~-~pd~~~~~~Li~a~~~~g~~~~A~~ 406 (818)
..|++++|.+.++++.+. .+.+...+..+...|.+.|++++|++.++++. . ..+...+..+...+...|++++|++
T Consensus 103 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777665 34456677777777777777777777777762 2 2356677777777777777777777
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 407 VVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 407 ~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
.++++++..|++...+..++.+|.+.|++++|.+.++...
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777666553
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.54 E-value=1.1e-13 Score=143.95 Aligned_cols=240 Identities=9% Similarity=-0.028 Sum_probs=181.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CC----hhhHHHHHHHH
Q 003457 219 LASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--RN----IATWNAMISGL 292 (818)
Q Consensus 219 ~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d----~~~~~~Li~~~ 292 (818)
+......+...|++++|...++++++.. +.+...+..+..+|.+.|++++|.+.|+++.+ ++ ...|..+...|
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344555566666666666666666653 33444556666677777777777777766554 22 23478888999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003457 293 ASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEA 372 (818)
Q Consensus 293 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A 372 (818)
...|++++|+..|+++.+.... +...+..+..+|...|++++|...++++.+. .+.+...+..+...+...+++++|
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999886433 5678889999999999999999999998764 445677888888344455699999
Q ss_pred HHHHHHc-CCCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHHhhchHHHH
Q 003457 373 EELIKRM-VWKP-DVVMWGALLAACKNHGN---IEVAERVVKEIIALE---PNN-----HGVYVVLSNMYAEAESMKMQL 439 (818)
Q Consensus 373 ~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~---~~~A~~~~~~~~~~~---P~~-----~~~y~~L~~~l~~~G~~~eA~ 439 (818)
++.|+++ ...| +...+..+...+...|+ +++|+..+++++++. |+. ..+|..++.+|.+.|++++|.
T Consensus 162 ~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 162 DSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999998 3344 47888888888888888 888999999998865 542 268889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeeecCC
Q 003457 440 EILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLLNGN 484 (818)
Q Consensus 440 ~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l~~~ 484 (818)
+.++... +++|+++.++-.+..+
T Consensus 242 ~~~~~al----------------------~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 242 AAWKNIL----------------------ALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHH----------------------HHCTTCHHHHHHHC--
T ss_pred HHHHHHH----------------------hcCccHHHHHHHhhhh
Confidence 9877774 8889988776655544
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=2.2e-13 Score=149.82 Aligned_cols=225 Identities=9% Similarity=0.023 Sum_probs=196.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC-HHHHHHHHhhCCC---CChhhHHHHHHH
Q 003457 216 SVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGA-LAKAKALFDSMPE---RNIATWNAMISG 291 (818)
Q Consensus 216 ~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~-~~~A~~~f~~m~~---~d~~~~~~Li~~ 291 (818)
...|..+...+.+.|++++|...++++++.. +.+...++.+..++.+.|+ +++|++.|+++.+ .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567777788899999999999999999986 6678899999999999997 9999999998875 577899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-cCCHH
Q 003457 292 LASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR-CGKVL 370 (818)
Q Consensus 292 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~-~g~~~ 370 (818)
+...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++. .+.+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999997544 7889999999999999999999999999986 55678999999999999 66657
Q ss_pred HH-----HHHHHHc-CCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh--------
Q 003457 371 EA-----EELIKRM-VWKP-DVVMWGALLAACKNHG--NIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE-------- 433 (818)
Q Consensus 371 ~A-----~~~~~~m-~~~p-d~~~~~~Li~a~~~~g--~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G-------- 433 (818)
+| ++.|+++ ...| +...|..+...+.+.| ++++|++.++++ +.+|+++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4778777 3455 5789999999888888 689999999998 999999999999999999985
Q ss_pred -chHHHHHHHHHH
Q 003457 434 -SMKMQLEILLVQ 445 (818)
Q Consensus 434 -~~~eA~~l~~~~ 445 (818)
.+++|+++++..
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 358999977666
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=2.7e-13 Score=136.01 Aligned_cols=193 Identities=12% Similarity=-0.011 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003457 251 AILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSAC 327 (818)
Q Consensus 251 ~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 327 (818)
...+..+...+...|++++|.+.|+++.+ .+...|..+...|...|++++|++.++++.+... .+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHH
Confidence 34444555555555555555555554432 2344566666666666666666666666665432 2455566666666
Q ss_pred HHc-CCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHH
Q 003457 328 CHA-GFIDVGRQIFGSMKRVYGIEP-KIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP-DVVMWGALLAACKNHGNIEV 403 (818)
Q Consensus 328 ~~~-g~~~~A~~~~~~m~~~~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~ 403 (818)
... |++++|...++++.+. +..| +...+..+...|.+.|++++|++.|+++. ..| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 666 6777777766666641 2222 24566666666777777777777766652 223 46666666777777777777
Q ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 404 AERVVKEIIALEP-NNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 404 A~~~~~~~~~~~P-~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
|.+.++++++..| ++...+..++.++...|+.++|..+++.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 7777777777777 66666766677777777777777766655
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=2.6e-12 Score=134.08 Aligned_cols=225 Identities=9% Similarity=-0.109 Sum_probs=122.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCcHHHHH
Q 003457 180 TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQ----SGCLELGEKVHVFVKMRGFEMGAILGT 255 (818)
Q Consensus 180 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~----~g~~~~A~~i~~~~~~~g~~~~~~~~~ 255 (818)
+..++..+...+...+++++|++.|++..+.+ +...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 33445555555555566666666666555522 33445555555555 555666666555555543 344444
Q ss_pred HHHHHHHh----CCCHHHHHHHHhhCCC-CChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 256 ALVHMYTK----NGALAKAKALFDSMPE-RNIATWNAMISGLAS----HGHAEEALDLFRKLEKEQIVPNDITFVGVLSA 326 (818)
Q Consensus 256 ~Li~~~~~----~g~~~~A~~~f~~m~~-~d~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 326 (818)
.+..+|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 45555555 5555555555544432 244455555555555 566666666666665543 34445555555
Q ss_pred HHH----cCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 003457 327 CCH----AGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR----CGKVLEAEELIKRMVWKPDVVMWGALLAACKN- 397 (818)
Q Consensus 327 ~~~----~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~- 397 (818)
|.. .+++++|...|++..+. .+...+..+..+|.. .+++++|++.|+++....+...+..+...|.+
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 555 56666666666665543 234555555555666 66666666666555322234555555555555
Q ss_pred ---cCCHHHHHHHHHHHHhcCCC
Q 003457 398 ---HGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 398 ---~g~~~~A~~~~~~~~~~~P~ 417 (818)
.+++++|++.|+++++++|+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCcccCHHHHHHHHHHHHHcCCH
Confidence 56666666666666666554
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=3.8e-13 Score=131.41 Aligned_cols=163 Identities=11% Similarity=0.080 Sum_probs=144.7
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003457 281 NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMV 360 (818)
Q Consensus 281 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li 360 (818)
+...|..+...|.+.|++++|++.|++.++..+. +...+..+..+|.+.|++++|...+..+... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 5678899999999999999999999999887543 6788889999999999999999999998876 556678888888
Q ss_pred HHHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHH
Q 003457 361 DLLGRCGKVLEAEELIKRMV-WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQ 438 (818)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA 438 (818)
..+...+++++|.+.++++. ..| +...+..+...+.+.|++++|++.|+++++++|+++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999872 334 6888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 003457 439 LEILLVQV 446 (818)
Q Consensus 439 ~~l~~~~~ 446 (818)
++.++..+
T Consensus 161 ~~~~~~al 168 (184)
T 3vtx_A 161 VKYFKKAL 168 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99777664
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=2.6e-13 Score=139.42 Aligned_cols=200 Identities=14% Similarity=0.008 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHH
Q 003457 217 VTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLA 293 (818)
Q Consensus 217 ~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~ 293 (818)
..+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+ .+...+..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 344455555555566666666665555543 23344444445555555555555555444332 23334444444444
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003457 294 SHGHAEEALDLFRKLEKEQIVP-NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEA 372 (818)
Q Consensus 294 ~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A 372 (818)
..|++++|+++++++.+.+..| +...+..+..++...|++++|.+.++++.+. .+.+...+..+...|.+.|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHH
Confidence 4444444444444444411122 2233334444444444444444444444433 222334444444444444444444
Q ss_pred HHHHHHc-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Q 003457 373 EELIKRM-VWK-PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 373 ~~~~~~m-~~~-pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~ 419 (818)
.+.|+++ ... .+...+..+...+...|++++|.+.++++++..|+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 4444443 111 1233344444444444444444444444444444433
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=1.3e-12 Score=136.33 Aligned_cols=220 Identities=11% Similarity=-0.032 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----CCCHHHHHHHHhhCCC-CChhhHHHHH
Q 003457 215 NSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTK----NGALAKAKALFDSMPE-RNIATWNAMI 289 (818)
Q Consensus 215 d~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~f~~m~~-~d~~~~~~Li 289 (818)
+..++..+...+...+++++|.+.+++..+. .+...+..+...|.. .+++++|.+.|++..+ .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5677788888999999999999999999984 355778889999999 9999999999998765 4778899999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003457 290 SGLAS----HGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCH----AGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVD 361 (818)
Q Consensus 290 ~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~ 361 (818)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 77888899999999 99999999999998875 2 6778888999
Q ss_pred HHHH----cCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH--
Q 003457 362 LLGR----CGKVLEAEELIKRMVWKPDVVMWGALLAACKN----HGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAE-- 431 (818)
Q Consensus 362 ~~~~----~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~----~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~-- 431 (818)
.|.. .+++++|++.|+++....+...+..+...|.. .+++++|++.|+++++.+| +..+..++.+|.+
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 9998 99999999999998544577888999999999 9999999999999999876 7889999999999
Q ss_pred --hhchHHHHHHHHHHH
Q 003457 432 --AESMKMQLEILLVQV 446 (818)
Q Consensus 432 --~G~~~eA~~l~~~~~ 446 (818)
.+++++|++.++...
T Consensus 233 ~~~~~~~~A~~~~~~a~ 249 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGC 249 (273)
T ss_dssp SSSCCSTTHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHH
Confidence 999999999776663
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=2.4e-13 Score=138.47 Aligned_cols=210 Identities=13% Similarity=0.042 Sum_probs=138.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcC
Q 003457 220 ASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHG 296 (818)
Q Consensus 220 ~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g 296 (818)
..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+ .+...+..+...|...|
T Consensus 27 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 27 GQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ---------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence 333334444444444444444444332 22344444444555555555555555544432 34566777777788888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 297 HAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELI 376 (818)
Q Consensus 297 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~ 376 (818)
++++|++.++++.+... .+...+..+...+.+.|++++|...++++.+. .+.+...+..+...|.+.|++++|++.|
T Consensus 106 ~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp CHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888877643 35667778888888889999999998888875 4556788888889999999999999999
Q ss_pred HHcC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 377 KRMV-WK-PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 377 ~~m~-~~-pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
+++. .. .+..++..+...|...|++++|++.+++++++.|++...+..++.+....|
T Consensus 183 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 183 AAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 8872 23 357889999999999999999999999999999999888887776655443
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=2.6e-12 Score=131.89 Aligned_cols=192 Identities=8% Similarity=-0.054 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 003457 183 VWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYT 262 (818)
Q Consensus 183 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~ 262 (818)
.|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 45555555555555555555555555442 3344445555555555555555555555555443 233444555555555
Q ss_pred hCCCHHHHHHHHhhCCC----C-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003457 263 KNGALAKAKALFDSMPE----R-NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGR 337 (818)
Q Consensus 263 ~~g~~~~A~~~f~~m~~----~-d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~ 337 (818)
+.|++++|.+.|+++.+ + +...+..+...|.+.|++++|+..|+++.+... .+...+..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555443 1 233444555555555555555555555554421 13444455555555555555555
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 338 QIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 338 ~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
..++++.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 196 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 196 QYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp HHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555554432 2334444555555555555555555555554
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=5.5e-13 Score=147.73 Aligned_cols=259 Identities=10% Similarity=-0.042 Sum_probs=162.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCcHHHHHHH
Q 003457 187 MISGYAQSFRANEALMLFDQMLMEGFEPNS----VTLASVLSACAQSGCLELGEKVHVFVKMR----G-FEMGAILGTAL 257 (818)
Q Consensus 187 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~~~~~~g~~~~A~~i~~~~~~~----g-~~~~~~~~~~L 257 (818)
+...+...|++++|+..|+++++.. +.+. ..+..+...+...|++++|...++++++. + .+.....+..+
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 132 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL 132 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence 3344444455555555555544432 1122 23444444444555555555555444432 0 01123344455
Q ss_pred HHHHHhCCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHc
Q 003457 258 VHMYTKNGALAKAKALFDSMPE---------RNIATWNAMISGLASHGH-----------------AEEALDLFRKLEKE 311 (818)
Q Consensus 258 i~~~~~~g~~~~A~~~f~~m~~---------~d~~~~~~Li~~~~~~g~-----------------~~~A~~l~~~m~~~ 311 (818)
...|...|++++|.+.|+++.+ ....++..+...|...|+ +++|++.+++..+.
T Consensus 133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5555666666666555554432 123356667777777777 77777777765432
Q ss_pred ----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHcC--
Q 003457 312 ----QIVP-NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAEELIKRMV-- 380 (818)
Q Consensus 312 ----g~~p-d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~-- 380 (818)
+..+ ....+..+...+...|++++|...+++..+......+ ...+..+...|...|++++|++.|+++.
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1111 1246667778888888888888888887654211122 2367788888899999999999888762
Q ss_pred --CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 381 --WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNN------HGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 381 --~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~------~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
...+ ..++..+...|...|++++|++.+++++++.++. ...+..++.+|.+.|++++|.+.++...
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1111 5677888888999999999999999998865442 4588899999999999999999776653
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=1.2e-12 Score=132.02 Aligned_cols=191 Identities=14% Similarity=-0.009 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 003457 182 NVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMY 261 (818)
Q Consensus 182 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~ 261 (818)
..+..+...+.+.|++++|+..|++.++.. +.+...+..+..++.+.|++++|...++++++.. +.+...+..+..+|
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444555555555555555555554432 3344444445555555555555555555555443 23334444444444
Q ss_pred HhC-----------CCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003457 262 TKN-----------GALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSAC 327 (818)
Q Consensus 262 ~~~-----------g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 327 (818)
.+. |++++|+..|++..+ .+...|..+...|...|++++|+..|+++++.. .+...+..+..++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence 443 444444444443332 123344444444444444444444444444443 3444444444444
Q ss_pred HHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 328 CHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKR 378 (818)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~ 378 (818)
...|++++|...|+++.+. .+.+...+..+...+.+.|++++|++.|++
T Consensus 162 ~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444444444433 222344444444444444444444444443
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.50 E-value=6.1e-13 Score=146.49 Aligned_cols=300 Identities=8% Similarity=-0.052 Sum_probs=197.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHhhcC---------
Q 003457 112 APNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLD---LHVVNCLVRCYSVSSDLNNARQVFDEIRNR--------- 179 (818)
Q Consensus 112 ~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~--------- 179 (818)
......+......+...|++++|...++++++...... ..++..+...|...|++++|...|++..+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555666777778888888888888888887643311 246677777888888888888887765431
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------hhH
Q 003457 180 TLNVWTTMISGYAQSFRANEALMLFDQMLMEGF-EPN----SVTLASVLSACAQSGC--------------------LEL 234 (818)
Q Consensus 180 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~~~~~~g~--------------------~~~ 234 (818)
...++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 123566777777777777777777777654310 011 2244445555555555 333
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 003457 235 GEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--RNIATWNAMISGLASHGHAEEALDLFRKLEKEQ 312 (818)
Q Consensus 235 A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g 312 (818)
|...+++..+ ++..... .....+..+...|...|++++|+..+++..+..
T Consensus 166 A~~~~~~al~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLS----------------------------LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHH----------------------------HHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 3333333222 1111111 123467777778888888888888888776421
Q ss_pred C-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHcC---
Q 003457 313 I-VPN----DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAEELIKRMV--- 380 (818)
Q Consensus 313 ~-~pd----~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~--- 380 (818)
. .++ ...+..+..++...|++++|...+++..+......+ ..++..+...|.+.|++++|.+.|+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 1 112 236677788888889999998888887654211122 5577888888999999999999888772
Q ss_pred -CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCcchHHHHHHHHHHhhchHHHH
Q 003457 381 -WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEP------NNHGVYVVLSNMYAEAESMKMQL 439 (818)
Q Consensus 381 -~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P------~~~~~y~~L~~~l~~~G~~~eA~ 439 (818)
...+ ..++..+...|...|++++|++.+++++++.+ ....++..++.++...|+..++.
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 1122 56778888889999999999999999887632 33567888888998888775433
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=2.2e-12 Score=142.04 Aligned_cols=261 Identities=11% Similarity=-0.019 Sum_probs=175.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCcHHHH
Q 003457 184 WTTMISGYAQSFRANEALMLFDQMLMEGFEPN----SVTLASVLSACAQSGCLELGEKVHVFVKMR----GF-EMGAILG 254 (818)
Q Consensus 184 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~----g~-~~~~~~~ 254 (818)
+..+...+...|++++|+..|+++++.. +.+ ...+..+...+...|++++|...++++... +. +....++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3444445555555555555555555442 122 123444445555555555555555554332 10 1113345
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHHcCC--------------------HHHHHHHH
Q 003457 255 TALVHMYTKNGALAKAKALFDSMPE-----RN----IATWNAMISGLASHGH--------------------AEEALDLF 305 (818)
Q Consensus 255 ~~Li~~~~~~g~~~~A~~~f~~m~~-----~d----~~~~~~Li~~~~~~g~--------------------~~~A~~l~ 305 (818)
..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5566666666666666666665543 11 3467777788888888 88888888
Q ss_pred HHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 306 RKLEKE----QIVPN-DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAEELI 376 (818)
Q Consensus 306 ~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~ 376 (818)
++..+. +..+. ...+..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|++.+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876542 11111 346778888999999999999999998765222233 347888999999999999999999
Q ss_pred HHcC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHHhhchHHHHHHH
Q 003457 377 KRMV----WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNN------HGVYVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 377 ~~m~----~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~------~~~y~~L~~~l~~~G~~~eA~~l~ 442 (818)
+++. ..++ ..++..+...|...|++++|++.+++++++.+.. ..++..++.+|.+.|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8872 1122 5678888999999999999999999999875443 568899999999999999999976
Q ss_pred HHH
Q 003457 443 LVQ 445 (818)
Q Consensus 443 ~~~ 445 (818)
+..
T Consensus 331 ~~a 333 (406)
T 3sf4_A 331 EKH 333 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=6.5e-12 Score=125.83 Aligned_cols=202 Identities=11% Similarity=0.002 Sum_probs=131.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHc-C
Q 003457 221 SVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASH-G 296 (818)
Q Consensus 221 ~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~-g 296 (818)
.+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+ .+...+..+...|... |
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 91 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN 91 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC
Confidence 33333444444444444444444332 22233444444444444444444444444332 2445666677777777 7
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003457 297 HAEEALDLFRKLEKEQIVPN-DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEEL 375 (818)
Q Consensus 297 ~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~ 375 (818)
++++|+..++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 169 (225)
T 2vq2_A 92 RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYY 169 (225)
T ss_dssp CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888877776322333 456677778888888888888888887765 344577888888888888888888888
Q ss_pred HHHcC-C-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 376 IKRMV-W-K-PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 376 ~~~m~-~-~-pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
++++. . . .+...+..+...+...|+.++|..+++.+.+..|+++.....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 170 FKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 88772 2 2 3566777777778889999999999999988999877665543
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=2.6e-12 Score=136.75 Aligned_cols=260 Identities=12% Similarity=-0.013 Sum_probs=169.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc----CC-CCcHHHHHH
Q 003457 186 TMISGYAQSFRANEALMLFDQMLMEGFEPN----SVTLASVLSACAQSGCLELGEKVHVFVKMR----GF-EMGAILGTA 256 (818)
Q Consensus 186 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~----g~-~~~~~~~~~ 256 (818)
.....+...|++++|+..|+++++.. +.+ ...+..+...+...|++++|...++++.+. +. +....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34445555566666666666555542 222 234445555555566666666655554432 11 112345555
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHHcCC--------------------HHHHHHHHHH
Q 003457 257 LVHMYTKNGALAKAKALFDSMPE-----RN----IATWNAMISGLASHGH--------------------AEEALDLFRK 307 (818)
Q Consensus 257 Li~~~~~~g~~~~A~~~f~~m~~-----~d----~~~~~~Li~~~~~~g~--------------------~~~A~~l~~~ 307 (818)
+...|...|++++|.+.|++..+ .+ ..++..+...|...|+ +++|+..+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 66666666777666666665542 11 2366677777777777 7888877777
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 308 LEKE----QIVP-NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAEELIKR 378 (818)
Q Consensus 308 m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~ 378 (818)
..+. +..+ ....+..+...+...|++++|...+++..+.....++ ...+..+...|...|++++|.+.+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6432 1111 1245667778888889999998888887654211122 34777888888999999999998887
Q ss_pred cC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHHhhchHHHHHHHHH
Q 003457 379 MV----WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNN------HGVYVVLSNMYAEAESMKMQLEILLV 444 (818)
Q Consensus 379 m~----~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~------~~~y~~L~~~l~~~G~~~eA~~l~~~ 444 (818)
+. ...+ ..++..+...+...|++++|.+.+++++++.|.. ...+..++.+|.+.|++++|.+.++.
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 62 1122 5677788888999999999999999998865543 44788899999999999999997766
Q ss_pred HH
Q 003457 445 QV 446 (818)
Q Consensus 445 ~~ 446 (818)
..
T Consensus 329 a~ 330 (338)
T 3ro2_A 329 HL 330 (338)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 58
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=9.6e-13 Score=148.59 Aligned_cols=339 Identities=10% Similarity=0.015 Sum_probs=233.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 85 TLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSL---NCCKQIHTHVSKSGLDLDLHVVNCLVRCYS 161 (818)
Q Consensus 85 ~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~ 161 (818)
.+...+.+.|++++|+++|++..+.|. ...+..|...+...|+. ++|.+.|++..+. +...+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356677888999999999999988753 33444555566667777 8999999998864 4455566666555
Q ss_pred hCC-----ChHHHHHHHHHhhcC-CHHHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 003457 162 VSS-----DLNNARQVFDEIRNR-TLNVWTTMISGYAQSFRAN---EALMLFDQMLMEGFEPNSVTLASVLSACAQSGCL 232 (818)
Q Consensus 162 ~~g-----~~~~A~~l~~~m~~~-d~~~~~~Li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~ 232 (818)
..+ +.++|.+.|++..++ +..++..|...|...+..+ ++.+.+.+..+.| +......+...|...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 555 788999999998775 4557888888888776543 4566666666555 334556677777777766
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC---CHHHHHHHHhhCCC---CChhhHHHHHHHHHHc----CCHHHHH
Q 003457 233 ELGEKVHVFVKMRGFEMGAILGTALVHMYTKNG---ALAKAKALFDSMPE---RNIATWNAMISGLASH----GHAEEAL 302 (818)
Q Consensus 233 ~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g---~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~----g~~~~A~ 302 (818)
+++......+.+.-...++..+..|..+|.+.| +.++|.+.|++..+ ++...+..|...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 555554443333322334447888999999999 99999999998765 3444456777777654 7999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-----CHHHHHH
Q 003457 303 DLFRKLEKEQIVPNDITFVGVLSA-C--CHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCG-----KVLEAEE 374 (818)
Q Consensus 303 ~l~~~m~~~g~~pd~~t~~~ll~a-~--~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g-----~~~~A~~ 374 (818)
.+|++.. .| +...+..+... + ...+++++|.+.|++..+. + +...+..|..+|. .| ++++|++
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999987 33 45566666666 4 4689999999999998865 3 7788888888887 55 9999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH----hhchHHHHHHHHHH
Q 003457 375 LIKRMVWKPDVVMWGALLAACKN----HGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAE----AESMKMQLEILLVQ 445 (818)
Q Consensus 375 ~~~~m~~~pd~~~~~~Li~a~~~----~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~----~G~~~eA~~l~~~~ 445 (818)
.|++.. .-+...+..|...|.. ..++++|..+|+++.+. .++.+...|+.+|.. ..++++|...++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 999998 6678888888887766 34999999999998764 567899999999985 34788898866554
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.45 E-value=5.5e-12 Score=130.95 Aligned_cols=240 Identities=12% Similarity=-0.017 Sum_probs=162.8
Q ss_pred hCCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHH
Q 003457 92 SSLNPDKAIFLYMNMRRTGFA---PNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNN 168 (818)
Q Consensus 92 ~~g~~~~Al~lf~~m~~~g~~---pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~ 168 (818)
..+++++|+..|+++.+.... .+...+..+...+...|++++|...++++++..+. +...+..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 346677777777777764221 13446667777777778888888877777776433 56777777888888888888
Q ss_pred HHHHHHHhhc---CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003457 169 ARQVFDEIRN---RTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 169 A~~l~~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~ 245 (818)
|.+.|+++.+ .+..+|..+...|.+.|++++|++.|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877765 25667888888888888888888888888775 344444444445556678888888888777776
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 003457 246 GFEMGAILGTALVHMYTKNGALAKAKALFDSMPERN-------IATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDI 318 (818)
Q Consensus 246 g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d-------~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 318 (818)
. +++...+ .++..+...++.++|.+.++++.+.+ ...|..+...|.+.|++++|+..|+++.+.. |+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~- 248 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN- 248 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT-
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh-
Confidence 4 3333333 36667777788888888888777632 3567777778888888888888888877653 321
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 003457 319 TFVGVLSACCHAGFIDVGRQIF 340 (818)
Q Consensus 319 t~~~ll~a~~~~g~~~~A~~~~ 340 (818)
+.....++...+++++|++.+
T Consensus 249 -~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 -FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CHHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHHhhHHHH
Confidence 122244556666777766655
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=2e-12 Score=146.84 Aligned_cols=205 Identities=9% Similarity=-0.064 Sum_probs=165.3
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCH-HHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 233 ELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGAL-AKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKL 308 (818)
Q Consensus 233 ~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~-~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m 308 (818)
+++.+.++...... +.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|.+.|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444443332 33555566666666666666 666666665543 34667888888888899999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc--------CCHHH
Q 003457 309 EKEQIVPNDITFVGVLSACCHA---------GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRC--------GKVLE 371 (818)
Q Consensus 309 ~~~g~~pd~~t~~~ll~a~~~~---------g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~--------g~~~~ 371 (818)
.+. .|+...+..+..++... |++++|++.|+++.+. .+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 876 46677888888888888 9999999999998876 455688899999999988 99999
Q ss_pred HHHHHHHcC-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHH
Q 003457 372 AEELIKRMV-WKP----DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 372 A~~~~~~m~-~~p----d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~ 442 (818)
|++.|+++. ..| +...|..+..+|...|++++|++.|+++++++|++..++..++.++...|++++|++.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999983 345 68899999999999999999999999999999999999999999999999999999854
No 61
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.44 E-value=9.5e-14 Score=162.82 Aligned_cols=125 Identities=14% Similarity=0.199 Sum_probs=109.5
Q ss_pred ChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC-------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 003457 46 DHFAASRLLAFCALSSSGDLSYATRLFNSIQ-------SPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTF 118 (818)
Q Consensus 46 d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~-------~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty 118 (818)
-..+||+||..| ++.|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 126 ~~~TynaLIdgl--cK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFKCC--LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 456899999999 99999999999997653 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 003457 119 TFVLKACSNVRSL-NCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQV 172 (818)
Q Consensus 119 ~~ll~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l 172 (818)
+++|.++++.|+. ++|.+++++|.+.|+.||..+|+.++..+.+.+-++...++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999985 78999999999999999999999998766655444433333
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.43 E-value=3.1e-12 Score=141.63 Aligned_cols=272 Identities=11% Similarity=0.004 Sum_probs=173.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHhhcC---------CHHH
Q 003457 117 TFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDL----HVVNCLVRCYSVSSDLNNARQVFDEIRNR---------TLNV 183 (818)
Q Consensus 117 ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~Li~~y~~~g~~~~A~~l~~~m~~~---------d~~~ 183 (818)
.+..+...+...|++++|...++++++.... +. ..+..+...|...|++++|.+.|++..+. ...+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4445556677777777777777777776433 22 35666677777777777777777665431 1235
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCC
Q 003457 184 WTTMISGYAQSFRANEALMLFDQMLMEG-----FEPNSVTLASVLSACAQSGC----------LELGEKVHVFVKMRGFE 248 (818)
Q Consensus 184 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g-----~~pd~~t~~~ll~~~~~~g~----------~~~A~~i~~~~~~~g~~ 248 (818)
+..+...|...|++++|++.|+++.+.. .+.....+..+...+...|+ .+++...
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~---------- 198 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA---------- 198 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence 6666666666777777776666654421 01112234444444444444 1111111
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC--
Q 003457 249 MGAILGTALVHMYTKNGALAKAKALFDSMPE---------RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIV-PN-- 316 (818)
Q Consensus 249 ~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---------~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd-- 316 (818)
+++|.+.+++..+ .....+..+...|...|++++|+..+++..+.... ++
T Consensus 199 ------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 199 ------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 4444444333221 12346677777888888888888888877653111 12
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCCC--
Q 003457 317 --DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAEELIKRMV----WKPD-- 384 (818)
Q Consensus 317 --~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~pd-- 384 (818)
...+..+..+|...|++++|...+++..+...-..+ ..++..+...|...|++++|.+.|+++. ...+
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 236677788888889999999888887654211111 5677888889999999999999998872 1112
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 385 --VVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 385 --~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
..++..+...|...|++++|.+.+++++++.+.
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 457788888999999999999999999988765
No 63
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.43 E-value=2e-13 Score=160.08 Aligned_cols=159 Identities=14% Similarity=0.192 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhh-------cCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 003457 149 DLHVVNCLVRCYSVSSDLNNARQVFDEIR-------NRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLAS 221 (818)
Q Consensus 149 ~~~~~~~Li~~y~~~g~~~~A~~l~~~m~-------~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 221 (818)
-..+|++||++|++.|++++|.++|++|. .+|+.+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 44689999999999999999999998765 36999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCC-----ChhhHHHHHHHHHHc
Q 003457 222 VLSACAQSGCL-ELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPER-----NIATWNAMISGLASH 295 (818)
Q Consensus 222 ll~~~~~~g~~-~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~-----d~~~~~~Li~~~~~~ 295 (818)
+|.++++.|+. ++|.+++++|.+.|+.||..+|+.++..+.+.+-++...++...+..+ .+.+...|...|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 788999999999999999999998887766654333333333322211 123344455555554
Q ss_pred C---------CHHHHHHHHHH
Q 003457 296 G---------HAEEALDLFRK 307 (818)
Q Consensus 296 g---------~~~~A~~l~~~ 307 (818)
+ ..++-.++|++
T Consensus 286 ~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 286 GRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp SCCCCCCCSSCHHHHHHHHHH
T ss_pred CCCcCccccCCHHHHHHHHHH
Confidence 4 23555555554
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.39 E-value=3.7e-11 Score=132.16 Aligned_cols=228 Identities=8% Similarity=-0.065 Sum_probs=118.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC------CcHHHH
Q 003457 186 TMISGYAQSFRANEALMLFDQMLMEGF-EPN----SVTLASVLSACAQSGCLELGEKVHVFVKMRGFE------MGAILG 254 (818)
Q Consensus 186 ~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~------~~~~~~ 254 (818)
.....+...|++++|+..|++..+.-. .++ ...+..+...+...|++++|...+.++.+.... ....++
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 355566677777777777777765310 112 245566666777777777777777666653100 112344
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHH
Q 003457 255 TALVHMYTKNGALAKAKALFDSMPE-----RN----IATWNAMISGLASHGHAEEALDLFRKLEKE----QI-VPNDITF 320 (818)
Q Consensus 255 ~~Li~~~~~~g~~~~A~~~f~~m~~-----~d----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~t~ 320 (818)
+.+..+|...|++++|.+.|++..+ .+ ..++..+...|...|++++|+..|++..+. +. +....++
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 5555556666666666555554432 11 124555556666666666666666655441 11 1123445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCC---HHHHHHHHHHcCCCCC-HHHHHHHHH
Q 003457 321 VGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK---IEHYGCMVDLLGRCGK---VLEAEELIKRMVWKPD-VVMWGALLA 393 (818)
Q Consensus 321 ~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~Li~~~~~~g~---~~~A~~~~~~m~~~pd-~~~~~~Li~ 393 (818)
..+..++.+.|++++|...+++..+......+ ...+..+...|...|+ +++|+.++++....|+ ...+..+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55555666666666666666554432110011 1223444445555555 5555555555532222 234444555
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 003457 394 ACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~ 413 (818)
.|...|++++|.+.++++++
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555554
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.38 E-value=1.6e-11 Score=130.67 Aligned_cols=134 Identities=8% Similarity=-0.030 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQI-VPN----DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IE 354 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~ 354 (818)
.+..+...|...|++++|+..+++..+... .++ ...+..+...+...|++++|...+++..+......+ ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 455566666666777777666666543210 011 235666677777777777777777776543211122 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 355 HYGCMVDLLGRCGKVLEAEELIKRMV----WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 355 ~~~~Li~~~~~~g~~~~A~~~~~~m~----~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
++..+...|...|++++|.+.++++. ...+ ..++..+...|.+.|++++|.+.+++++++.++
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 67778888888888888888887762 1112 456778888899999999999999999987765
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=2.5e-11 Score=118.37 Aligned_cols=167 Identities=12% Similarity=0.068 Sum_probs=140.1
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 250 GAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSA 326 (818)
Q Consensus 250 ~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 326 (818)
+..+|..|...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..+++....... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 456677778888888888888888877654 46678888888999999999999999998876433 56677778888
Q ss_pred HHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 003457 327 CCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVA 404 (818)
Q Consensus 327 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A 404 (818)
+...++++.+...+.+..+. .+.+...+..+..+|.+.|++++|++.|+++ ...| +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998876 5567888999999999999999999999988 3344 688899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 003457 405 ERVVKEIIALEPNNH 419 (818)
Q Consensus 405 ~~~~~~~~~~~P~~~ 419 (818)
++.|+++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999854
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=2e-10 Score=122.38 Aligned_cols=220 Identities=11% Similarity=0.079 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 003457 198 NEALMLFDQMLMEGFEPNSVTLASVLSACA-------QSGCL-------ELGEKVHVFVKMRGFEMGAILGTALVHMYTK 263 (818)
Q Consensus 198 ~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~-------~~g~~-------~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~ 263 (818)
++|+.+|+++++.. +-+...|..++..+. +.|+. ++|..++++.++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776653 445556666555554 34665 7888888888873124456677788888888
Q ss_pred CCCHHHHHHHHhhCCC--C-Chh-hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHH
Q 003457 264 NGALAKAKALFDSMPE--R-NIA-TWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACC-HAGFIDVGRQ 338 (818)
Q Consensus 264 ~g~~~~A~~~f~~m~~--~-d~~-~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-~~g~~~~A~~ 338 (818)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++.++... .+...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888887765 2 343 788888888899999999999999988643 23444443333322 3699999999
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 339 IFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVW----KP--DVVMWGALLAACKNHGNIEVAERVVKEII 412 (818)
Q Consensus 339 ~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~----~p--d~~~~~~Li~a~~~~g~~~~A~~~~~~~~ 412 (818)
+|++.++. .+.+...|..++..+.+.|++++|..+|+++.. .| ....|..++..+.+.|+.++|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998876 455788899999999999999999999998832 44 46788888988889999999999999999
Q ss_pred hcCCCCcch
Q 003457 413 ALEPNNHGV 421 (818)
Q Consensus 413 ~~~P~~~~~ 421 (818)
+..|++...
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 999986644
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.35 E-value=1.7e-11 Score=134.92 Aligned_cols=223 Identities=10% Similarity=-0.014 Sum_probs=175.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-----C-----ChhhHH
Q 003457 222 VLSACAQSGCLELGEKVHVFVKMR----GFEM-GAILGTALVHMYTKNGALAKAKALFDSMPE-----R-----NIATWN 286 (818)
Q Consensus 222 ll~~~~~~g~~~~A~~i~~~~~~~----g~~~-~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-----~-----d~~~~~ 286 (818)
....+...|++++|...++++.+. +.++ ...++..+..+|...|++++|.+.+++..+ + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556678899999999999999875 1111 346788899999999999999998887763 1 234788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---CC-CCCHHHHH
Q 003457 287 AMISGLASHGHAEEALDLFRKLEKEQIV-PN----DITFVGVLSACCHAGFIDVGRQIFGSMKRVY---GI-EPKIEHYG 357 (818)
Q Consensus 287 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~---g~-~p~~~~~~ 357 (818)
.+...|...|++++|+..|++..+.... ++ ..++..+..+|...|++++|...+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8999999999999999999998753111 12 2477889999999999999999999987621 22 33467889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcC----C--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCcchHHHHHH
Q 003457 358 CMVDLLGRCGKVLEAEELIKRMV----W--KPD-VVMWGALLAACKNHGN---IEVAERVVKEIIALEPNNHGVYVVLSN 427 (818)
Q Consensus 358 ~Li~~~~~~g~~~~A~~~~~~m~----~--~pd-~~~~~~Li~a~~~~g~---~~~A~~~~~~~~~~~P~~~~~y~~L~~ 427 (818)
.+...|.+.|++++|.+.++++. . .|. ...+..+...+...|+ +++|+.++++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 99999999999999999999872 1 122 2335667777888888 88888888776 344555678899999
Q ss_pred HHHHhhchHHHHHHHHHH
Q 003457 428 MYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 428 ~l~~~G~~~eA~~l~~~~ 445 (818)
+|.+.|++++|.+.++..
T Consensus 348 ~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 999999999999987766
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=2.6e-11 Score=143.76 Aligned_cols=163 Identities=18% Similarity=0.136 Sum_probs=146.2
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003457 281 NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMV 360 (818)
Q Consensus 281 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li 360 (818)
+..+|+.|...|.+.|++++|++.|++.++.... +...+..+..+|.+.|++++|++.|+++++. .+.+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4568899999999999999999999999987433 5788999999999999999999999999876 445688999999
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHH
Q 003457 361 DLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQ 438 (818)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA 438 (818)
.+|.+.|++++|++.|+++ ...| +...|..+..+|.+.|++++|++.|+++++++|+++.++..|+.+|.+.|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999988 3455 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 003457 439 LEILLVQV 446 (818)
Q Consensus 439 ~~l~~~~~ 446 (818)
.+.++...
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99776654
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.34 E-value=2e-11 Score=123.65 Aligned_cols=179 Identities=12% Similarity=0.033 Sum_probs=108.3
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 003457 281 NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMV 360 (818)
Q Consensus 281 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li 360 (818)
|+..+..+...+...|++++|+..|++.++....++...+..+..++...|++++|+..+++..+. .+.+...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 344555556666666666666666666665543345555555666666666666666666665543 223345566666
Q ss_pred HHHHHcCCHHHHHHHHHHc-CCCC-CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHH
Q 003457 361 DLLGRCGKVLEAEELIKRM-VWKP-DV-------VMWGALLAACKNHGNIEVAERVVKEIIALEPN--NHGVYVVLSNMY 429 (818)
Q Consensus 361 ~~~~~~g~~~~A~~~~~~m-~~~p-d~-------~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~--~~~~y~~L~~~l 429 (818)
..|.+.|++++|++.|+++ ...| +. ..|..+...+...|++++|++.|+++++++|+ ++..+..++.+|
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 6666666666666666655 2223 23 34555555666666666666666666666666 666666666666
Q ss_pred HHhhch---------------------------HHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeeec
Q 003457 430 AEAESM---------------------------KMQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLLN 482 (818)
Q Consensus 430 ~~~G~~---------------------------~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l~ 482 (818)
...|+. ++|++.++... +++|+++.+..+++
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~----------------------~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAV----------------------TLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------hcCCCCHHHHHHHH
Confidence 666665 88888666653 78888877665554
Q ss_pred C
Q 003457 483 G 483 (818)
Q Consensus 483 ~ 483 (818)
.
T Consensus 222 ~ 222 (228)
T 4i17_A 222 Q 222 (228)
T ss_dssp H
T ss_pred H
Confidence 3
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=2.9e-11 Score=116.77 Aligned_cols=159 Identities=14% Similarity=0.057 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLL 363 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~ 363 (818)
.|..+...+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 344455555556666666666655554321 24455556666666666666666666666554 334556666666667
Q ss_pred HHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHH
Q 003457 364 GRCGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 364 ~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l 441 (818)
...|++++|.+.|+++. ...+...+..+...+...|++++|++.++++++..|+++..+..++.++.+.|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776652 2235667777777778888888888888888888888788888888888888888888886
Q ss_pred HHHH
Q 003457 442 LLVQ 445 (818)
Q Consensus 442 ~~~~ 445 (818)
++..
T Consensus 167 ~~~~ 170 (186)
T 3as5_A 167 FKKA 170 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=1.5e-10 Score=123.37 Aligned_cols=209 Identities=9% Similarity=0.006 Sum_probs=170.8
Q ss_pred hHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-------hCCCH-------HHHHHHHhhCCC----CChhhHHHHHHHHHH
Q 003457 233 ELGEKVHVFVKMRGFEMGAILGTALVHMYT-------KNGAL-------AKAKALFDSMPE----RNIATWNAMISGLAS 294 (818)
Q Consensus 233 ~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~-------~~g~~-------~~A~~~f~~m~~----~d~~~~~~Li~~~~~ 294 (818)
++|..+|+++++.. +.+...|..++..+. +.|++ ++|..+|++..+ .+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888999998874 667788888887775 35875 899999998765 355689999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-HcCCHHH
Q 003457 295 HGHAEEALDLFRKLEKEQIVPN-DI-TFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLG-RCGKVLE 371 (818)
Q Consensus 295 ~g~~~~A~~l~~~m~~~g~~pd-~~-t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~-~~g~~~~ 371 (818)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++.+. .+.+...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 343 33 7888999999999999999999998864 3445566655544433 3799999
Q ss_pred HHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 372 AEELIKRMV-WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIAL---EPN-NHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 372 A~~~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~---~P~-~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
|.++|+++. ..| +...|..++..+.+.|++++|+.+|+++++. .|+ ....|..++..+.+.|++++|.++++..
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999882 234 6888999999999999999999999999995 553 6778999999999999999999987766
Q ss_pred H
Q 003457 446 V 446 (818)
Q Consensus 446 ~ 446 (818)
.
T Consensus 268 ~ 268 (308)
T 2ond_A 268 F 268 (308)
T ss_dssp H
T ss_pred H
Confidence 3
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.31 E-value=3.1e-12 Score=135.18 Aligned_cols=233 Identities=13% Similarity=0.052 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc------C-C
Q 003457 182 NVWTTMISGYAQSFRANEALMLFDQMLME-------GFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMR------G-F 247 (818)
Q Consensus 182 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~------g-~ 247 (818)
.++..+...+...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...++++++. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46777778888888888888888887663 12223445666667777777777777777776653 1 1
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHH
Q 003457 248 EMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKE------QIVP-NDITF 320 (818)
Q Consensus 248 ~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~t~ 320 (818)
+.....+..+...|...|++++|.+.|+++ .+. +..| ....+
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------------------~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRA-------------------------------LEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-------------------------------HHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHH-------------------------------HHHHHHhcCCCChHHHHHH
Confidence 112334444555555555555555555443 321 1111 12233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh-----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC----------CCC-
Q 003457 321 VGVLSACCHAGFIDVGRQIFGSMKRVY-----G-IEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV----------WKP- 383 (818)
Q Consensus 321 ~~ll~a~~~~g~~~~A~~~~~~m~~~~-----g-~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~----------~~p- 383 (818)
..+...+...|++++|.++++++.+.. + .+....++..+...|.+.|++++|++.|+++. ..+
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 344444444555555555544443320 0 01112344445555555555555555554441 000
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 384 ------DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 384 ------d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
....+..+...+...+.+.++...+++.....|....++..++.+|.+.|++++|.++++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 01122222333344555666666677776667777777777777777777777777766554
No 74
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=1.1e-08 Score=119.78 Aligned_cols=79 Identities=9% Similarity=0.047 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHhhhhcCCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHcC-CCCCHHH
Q 003457 45 QDHFAASRLLAFCALSSSGDLSYATRLFNSIQ---SPNHFMWNTLIRAQASSLN---PDKAIFLYMNMRRTG-FAPNQHT 117 (818)
Q Consensus 45 ~d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~---~p~~~~yn~Li~~~~~~g~---~~~Al~lf~~m~~~g-~~pd~~t 117 (818)
.|...|..++..+ .+.++++.+..+|+++. ......|..-+..-.+.++ ++.+..+|++..... ..|+...
T Consensus 64 ~d~~~W~~yi~~~--~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHH--VSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 3555555555555 55555555555555544 2334445555555555555 555555555555432 1245544
Q ss_pred HHHHHHHH
Q 003457 118 FTFVLKAC 125 (818)
Q Consensus 118 y~~ll~~~ 125 (818)
|...+.-.
T Consensus 142 W~~Yl~f~ 149 (679)
T 4e6h_A 142 WLSYITYV 149 (679)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=1.2e-11 Score=130.65 Aligned_cols=239 Identities=13% Similarity=0.057 Sum_probs=150.5
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhc--------CC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHc------C
Q 003457 149 DLHVVNCLVRCYSVSSDLNNARQVFDEIRN--------RT---LNVWTTMISGYAQSFRANEALMLFDQMLME------G 211 (818)
Q Consensus 149 ~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~--------~d---~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~------g 211 (818)
+..++..+...|...|++++|..+|+++.+ .+ ...+..+...|...|++++|+..++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456788899999999999999999998876 22 346888999999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhh
Q 003457 212 F-EPNSVTLASVLSACAQSGCLELGEKVHVFVKMRG------FEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIAT 284 (818)
Q Consensus 212 ~-~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g------~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~ 284 (818)
- +.....+..+...+...|++++|...++++.+.. ..+. ....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~ 155 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQ 155 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHH
Confidence 1 2235577788899999999999999999888641 1111 1223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------CCCC
Q 003457 285 WNAMISGLASHGHAEEALDLFRKLEKE------QIVPN-DITFVGVLSACCHAGFIDVGRQIFGSMKRVY------GIEP 351 (818)
Q Consensus 285 ~~~Li~~~~~~g~~~~A~~l~~~m~~~------g~~pd-~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~------g~~p 351 (818)
+..+...|...|++++|+++|+++.+. +..|+ ...+..+..+|...|++++|...++++.+.. ...+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444444555555555555555554432 11111 2344555566666666666666666655420 0111
Q ss_pred C-------HHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 352 K-------IEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 352 ~-------~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
. ...+..+...+...+.+.+|...+++.. ..| +..++..+...|.+.|++++|+++|++++++.|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1222333334445556666666676663 233 3678888999999999999999999999998775
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.28 E-value=2.7e-09 Score=116.52 Aligned_cols=257 Identities=13% Similarity=-0.020 Sum_probs=138.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-Cc----HHHHHHHHH
Q 003457 189 SGYAQSFRANEALMLFDQMLMEGFEPNSV----TLASVLSACAQSGCLELGEKVHVFVKMRGFE-MG----AILGTALVH 259 (818)
Q Consensus 189 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~-~~----~~~~~~Li~ 259 (818)
..+...|++++|...+++.++.....+.. .+..+...+...|++++|...+++..+.... .+ ...+..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34444555555555555554432111111 2333334444555555555555554432100 01 122344555
Q ss_pred HHHhCCCHHHHHHHHhhCCC-------C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Q 003457 260 MYTKNGALAKAKALFDSMPE-------R----NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVP----NDITFVGVL 324 (818)
Q Consensus 260 ~~~~~g~~~~A~~~f~~m~~-------~----d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~t~~~ll 324 (818)
.+...|++++|.+.+++..+ + ....+..+...+...|++++|...+++..+..... ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 56666666666665554432 1 12244556666677777777777777766532211 124555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHcC-CCCC-----HHHHHHHHH
Q 003457 325 SACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYG-----CMVDLLGRCGKVLEAEELIKRMV-WKPD-----VVMWGALLA 393 (818)
Q Consensus 325 ~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~-----~Li~~~~~~g~~~~A~~~~~~m~-~~pd-----~~~~~~Li~ 393 (818)
..+...|++++|...+++.............+. .++..+...|++++|.+.+++.. ..+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 677777777777777777654421111111111 23334667777777777777763 1111 234556666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC------CcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPN------NHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~------~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.+...|++++|...++++++..+. ....+..++.++.+.|++++|.+.++..
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777777777777777777664322 1235666777777777777777755544
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=9.2e-10 Score=120.76 Aligned_cols=160 Identities=13% Similarity=-0.046 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--C----CcHHH
Q 003457 185 TTMISGYAQSFRANEALMLFDQMLMEGF-EPN----SVTLASVLSACAQSGCLELGEKVHVFVKMRGF--E----MGAIL 253 (818)
Q Consensus 185 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~--~----~~~~~ 253 (818)
......+...|++++|+..|+++.+.-. .++ ...+..+...+...|++++|...++++.+... . ....+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3344556667777777777777654310 122 23455566666667777777666666554310 0 01223
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 003457 254 GTALVHMYTKNGALAKAKALFDSMPE-----RN----IATWNAMISGLASHGHAEEALDLFRKLEK-----EQIVPNDIT 319 (818)
Q Consensus 254 ~~~Li~~~~~~g~~~~A~~~f~~m~~-----~d----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t 319 (818)
++.+..+|...|++++|.+.|++..+ .+ ..++..+...|...|++++|+..|++..+ .... ...+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence 44444555555555555554444332 01 12344444445555555555555554443 2111 1334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003457 320 FVGVLSACCHAGFIDVGRQIFGSMKR 345 (818)
Q Consensus 320 ~~~ll~a~~~~g~~~~A~~~~~~m~~ 345 (818)
+..+..++.+.|++++|...+++..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444455555555555444443
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=1.5e-10 Score=131.35 Aligned_cols=209 Identities=10% Similarity=-0.033 Sum_probs=160.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 003457 197 ANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCL-ELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFD 275 (818)
Q Consensus 197 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~-~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~ 275 (818)
+++++..+++..... +.+...+..+...+...|++ ++|.+.++++++.. +.+...+..+..+|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455556666554432 34566667777777777777 77777777777764 4456677777777778888888887777
Q ss_pred hCCC--CChhhHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------CCHHHH
Q 003457 276 SMPE--RNIATWNAMISGLASH---------GHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHA--------GFIDVG 336 (818)
Q Consensus 276 ~m~~--~d~~~~~~Li~~~~~~---------g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--------g~~~~A 336 (818)
+..+ |+...+..+...|... |++++|+..|++..+..+. +...+..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 7654 5566777777788887 8999999999999887433 577888888888888 899999
Q ss_pred HHHHHHHHHHhCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 337 RQIFGSMKRVYGIE---PKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKE 410 (818)
Q Consensus 337 ~~~~~~m~~~~g~~---p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~ 410 (818)
+..|+++.+. .+ .+...|..+..+|.+.|++++|++.|+++ ...| +...+..+...+...|++++|++.+++
T Consensus 241 ~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 241 LSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999998875 33 47889999999999999999999999988 3345 577888888889999999888876543
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=1.5e-10 Score=127.10 Aligned_cols=225 Identities=9% Similarity=-0.070 Sum_probs=172.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCC--C---CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-----C-----ChhhH
Q 003457 221 SVLSACAQSGCLELGEKVHVFVKMRGF--E---MGAILGTALVHMYTKNGALAKAKALFDSMPE-----R-----NIATW 285 (818)
Q Consensus 221 ~ll~~~~~~g~~~~A~~i~~~~~~~g~--~---~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-----~-----d~~~~ 285 (818)
.....+...|++++|...++++.+.-. + ....++..+..+|...|+++.|...+++..+ + ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344566789999999999999986521 1 1245778899999999999999988887653 1 23478
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh---CCCCCHHHHH
Q 003457 286 NAMISGLASHGHAEEALDLFRKLEKE----QIVP-NDITFVGVLSACCHAGFIDVGRQIFGSMKRVY---GIEPKIEHYG 357 (818)
Q Consensus 286 ~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~---g~~p~~~~~~ 357 (818)
+.+...|...|++++|++.|++..+. +..+ ...++..+..+|...|++++|...+++..+.. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88999999999999999999988753 1111 13467788999999999999999999987621 2333467888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcC----C--CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCcchHHHHHH
Q 003457 358 CMVDLLGRCGKVLEAEELIKRMV----W--KPD-VVMWGALLAACKNHGN---IEVAERVVKEIIALEPNNHGVYVVLSN 427 (818)
Q Consensus 358 ~Li~~~~~~g~~~~A~~~~~~m~----~--~pd-~~~~~~Li~a~~~~g~---~~~A~~~~~~~~~~~P~~~~~y~~L~~ 427 (818)
.+...|.+.|++++|.+.++++. . .+. ...+..+...+...++ +++|+..+++. ...|+....+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHH
Confidence 99999999999999999999872 1 232 3445666666777788 88888888762 233445678889999
Q ss_pred HHHHhhchHHHHHHHHHHH
Q 003457 428 MYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 428 ~l~~~G~~~eA~~l~~~~~ 446 (818)
+|.+.|++++|.+.++...
T Consensus 345 ~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 9999999999999776663
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=6.1e-09 Score=122.08 Aligned_cols=401 Identities=9% Similarity=0.024 Sum_probs=209.5
Q ss_pred CCCChhHHHHHHHHhc---CchHHHHHHHHHHHhCCCCChHHHHHHHHHhhhhcCCC---HHHHHHHHhhcC--C---CC
Q 003457 11 PPLPIPPLSLLADKCK---SMHQLKQIHAQMIISSRIQDHFAASRLLAFCALSSSGD---LSYATRLFNSIQ--S---PN 79 (818)
Q Consensus 11 ~~p~~~tl~~ll~~c~---~~~~~~~~~~~~~~~g~~~d~~~~~~Ll~~~a~~k~g~---~e~A~~lf~~~~--~---p~ 79 (818)
.+-|..++..++..+. ....++.+++.++.. +......|...+.+- .+.++ .+.+.++|++.. . |+
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E--~~~~~~~~~~~v~~lfeRal~~~~~~~s 138 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLE--FDKMEELDAAVIEPVLARCLSKELGNND 138 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH--HTC--CCCHHHHHHHHHHHTCSSSCCCC
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH--HhhCCcchHHHHHHHHHHHHHhcCCCCC
Confidence 3445666666666653 344557788887765 666778888888887 77888 999999999876 2 78
Q ss_pred HHHHHHHHHHHHhCCCh--------hHHHHHHHHHHH-cCC-CCC-HHHHHHHHHHHHc---------cCChHHHHHHHH
Q 003457 80 HFMWNTLIRAQASSLNP--------DKAIFLYMNMRR-TGF-APN-QHTFTFVLKACSN---------VRSLNCCKQIHT 139 (818)
Q Consensus 80 ~~~yn~Li~~~~~~g~~--------~~Al~lf~~m~~-~g~-~pd-~~ty~~ll~~~~~---------~g~~~~A~~~~~ 139 (818)
+..|..-+....+.++. +...++|+.... -|. .|+ ...|...+..... .++++.+..+|+
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 88888888776665543 334477777654 355 554 3566666654432 335677888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCC-------------ChHHHHHHHHHhhc------CC--------------------
Q 003457 140 HVSKSGLDLDLHVVNCLVRCYSVSS-------------DLNNARQVFDEIRN------RT-------------------- 180 (818)
Q Consensus 140 ~m~~~g~~p~~~~~~~Li~~y~~~g-------------~~~~A~~l~~~m~~------~d-------------------- 180 (818)
.++......-..+|......-...+ +++.|...+.++.. +.
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 8875422222334433322211111 12223333332210 00
Q ss_pred ---HHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHcCCCC
Q 003457 181 ---LNVWTTMISGYAQSF-------RANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGE-KVHVFVKMRGFEM 249 (818)
Q Consensus 181 ---~~~~~~Li~~~~~~g-------~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~-~i~~~~~~~g~~~ 249 (818)
...|...+.---..+ ..+.+..+|++++.. ++-+...|...+..+.+.|+.++|. .+|++.+... +.
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~ 376 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PN 376 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CC
Confidence 012333332211111 012334455555544 2345555555555555556666664 6666665532 34
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-------------C------------ChhhHHHHHHHHHHcCCHHHHHHH
Q 003457 250 GAILGTALVHMYTKNGALAKAKALFDSMPE-------------R------------NIATWNAMISGLASHGHAEEALDL 304 (818)
Q Consensus 250 ~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-------------~------------d~~~~~~Li~~~~~~g~~~~A~~l 304 (818)
+...+..++...-+.|+++.|.++|+++.+ | ....|...+....+.++.+.|..+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444555555566666666666666665542 1 012355555555555566666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CC
Q 003457 305 FRKLEKEQIVPNDITFVGVLSACCHA-GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WK 382 (818)
Q Consensus 305 ~~~m~~~g~~pd~~t~~~ll~a~~~~-g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~ 382 (818)
|.++++.-.......|...+..-.+. ++.+.|..+|+..++. ++.+...+...++.....|+.+.|..+|+++. ..
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 66655541111122222222111222 3356666666665554 33344455555555555666666666666552 11
Q ss_pred C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 383 P----DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 383 p----d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
| ....|...+.--.+.|+.+.+..+.+++.+..|++
T Consensus 535 ~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 535 SDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2 13445555555555666666666666666666653
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=7.7e-10 Score=106.63 Aligned_cols=168 Identities=11% Similarity=0.022 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003457 251 AILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSAC 327 (818)
Q Consensus 251 ~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 327 (818)
...+..+...+...|++++|.+.|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778889999999999999999876 366788899999999999999999999998874 33677888889999
Q ss_pred HHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHHcCCHHHHH
Q 003457 328 CHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WK-PDVVMWGALLAACKNHGNIEVAE 405 (818)
Q Consensus 328 ~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~-pd~~~~~~Li~a~~~~g~~~~A~ 405 (818)
...|++++|.+.++++.+. .+.+...+..+...|.+.|++++|.+.++++. .. .+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999886 55678899999999999999999999999882 23 36788999999999999999999
Q ss_pred HHHHHHHhcCCCCcch
Q 003457 406 RVVKEIIALEPNNHGV 421 (818)
Q Consensus 406 ~~~~~~~~~~P~~~~~ 421 (818)
+.+++++++.|++...
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998886543
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=4.1e-10 Score=113.80 Aligned_cols=206 Identities=10% Similarity=0.031 Sum_probs=159.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHH
Q 003457 213 EPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMI 289 (818)
Q Consensus 213 ~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li 289 (818)
+.|...+......+...|++++|...|+++++...+++...+..+..+|.+.|++++|++.|++..+ .+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3466788888889999999999999999999886436777777799999999999999999998764 3566888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC---HHHHHHH
Q 003457 290 SGLASHGHAEEALDLFRKLEKEQIVPND-------ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK---IEHYGCM 359 (818)
Q Consensus 290 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~L 359 (818)
..|...|++++|+..|++..+..+. +. ..|..+...+...|++++|+..|+++++ ..|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 9999999999999999999886432 34 4577788888899999999999999875 3454 5777888
Q ss_pred HHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003457 360 VDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMY 429 (818)
Q Consensus 360 i~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l 429 (818)
..+|...|+. .++++. ...+...+..+. ....+.+++|+..++++++++|++..+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888765543 333331 122344444433 34566789999999999999999988887776554
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=3.4e-10 Score=134.13 Aligned_cols=166 Identities=13% Similarity=0.092 Sum_probs=138.7
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003457 249 MGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLS 325 (818)
Q Consensus 249 ~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 325 (818)
.+...++.|..+|.+.|++++|++.|++..+ .+..+|+.|..+|.+.|++++|++.|++.++.... +...|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3456777788888888888888888887664 45678888999999999999999999998886433 5778889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHH
Q 003457 326 ACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEV 403 (818)
Q Consensus 326 a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~ 403 (818)
+|.+.|++++|++.|++.++. .+.+...|..+..+|.+.|++++|++.|+++ ...| +...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998875 4456889999999999999999999999988 4456 47889999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 003457 404 AERVVKEIIALEPN 417 (818)
Q Consensus 404 A~~~~~~~~~~~P~ 417 (818)
|.+.+++++++.|+
T Consensus 164 A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 164 YDERMKKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh
Confidence 99999999886654
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.14 E-value=2.6e-08 Score=108.58 Aligned_cols=223 Identities=12% Similarity=-0.055 Sum_probs=116.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHcCCC-CC----HHHHHHHH
Q 003457 87 IRAQASSLNPDKAIFLYMNMRRTGFAPNQH----TFTFVLKACSNVRSLNCCKQIHTHVSKSGLD-LD----LHVVNCLV 157 (818)
Q Consensus 87 i~~~~~~g~~~~Al~lf~~m~~~g~~pd~~----ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~Li 157 (818)
...+...|++++|+..+++........+.. .+..+...+...|++++|.+.+++.++.... .+ ...+..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556677777777776665543222221 3444455566667777777666666543111 01 12244555
Q ss_pred HHHHhCCChHHHHHHHHHhhcC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--CHHHHHHH
Q 003457 158 RCYSVSSDLNNARQVFDEIRNR-----------TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFE--P--NSVTLASV 222 (818)
Q Consensus 158 ~~y~~~g~~~~A~~l~~~m~~~-----------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~t~~~l 222 (818)
..+...|++++|.+.+++..+. ....+..+...+...|++++|...+++..+.... + ....+..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6666667777776666655421 0124455666666677777777777666543211 0 12345555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCc--HHHHH----HHHHHHHhCCCHHHHHHHHhhCCCCC-------hhhHHHHH
Q 003457 223 LSACAQSGCLELGEKVHVFVKMRGFEMG--AILGT----ALVHMYTKNGALAKAKALFDSMPERN-------IATWNAMI 289 (818)
Q Consensus 223 l~~~~~~g~~~~A~~i~~~~~~~g~~~~--~~~~~----~Li~~~~~~g~~~~A~~~f~~m~~~d-------~~~~~~Li 289 (818)
...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++..+.+ ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 5666666777777776666654311111 11111 22233556666666666666655421 11234445
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 003457 290 SGLASHGHAEEALDLFRKLE 309 (818)
Q Consensus 290 ~~~~~~g~~~~A~~l~~~m~ 309 (818)
..+...|++++|...+++..
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555543
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=3.9e-09 Score=109.08 Aligned_cols=180 Identities=8% Similarity=-0.033 Sum_probs=108.2
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--C-C---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHH
Q 003457 250 GAILGTALVHMYTKNGALAKAKALFDSMPE--R-N---IATWNAMISGLASHGHAEEALDLFRKLEKEQI-VPN-DITFV 321 (818)
Q Consensus 250 ~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~-d---~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd-~~t~~ 321 (818)
+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|+++++..+ .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344444555566666666666666665553 2 2 34555556666666666666666666655422 111 23444
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Q 003457 322 GVLSACCH--------AGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLA 393 (818)
Q Consensus 322 ~ll~a~~~--------~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~ 393 (818)
.+..++.. .|++++|+..|+++++. .+.+......+.......++. ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555555 56666666666665554 111222221111111000000 112366788
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHHHh----------hchHHHHHHHHHHH
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPNN---HGVYVVLSNMYAEA----------ESMKMQLEILLVQV 446 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~~---~~~y~~L~~~l~~~----------G~~~eA~~l~~~~~ 446 (818)
.|.+.|++++|+..|+++++..|++ +.++..++.+|.+. |++++|++.++..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 8999999999999999999999984 46899999999977 99999999776664
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=3.2e-09 Score=109.76 Aligned_cols=206 Identities=9% Similarity=-0.011 Sum_probs=153.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHhCCCHHHHHHHHhhCCC--C----Chh
Q 003457 213 EPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMG---AILGTALVHMYTKNGALAKAKALFDSMPE--R----NIA 283 (818)
Q Consensus 213 ~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~---~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~----d~~ 283 (818)
+.+...+..+...+.+.|++++|...|+++++.. +.+ ...+..+..+|.+.|++++|...|+++.+ | ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4466777888889999999999999999999875 333 67788899999999999999999998875 2 235
Q ss_pred hHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHH
Q 003457 284 TWNAMISGLAS--------HGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEH 355 (818)
Q Consensus 284 ~~~~Li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~ 355 (818)
.+..+..++.. .|++++|+..|+++++..+. +......+ ..+..+... -...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 67788888988 99999999999999987432 11221111 111111110 0123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhcCCCCc-
Q 003457 356 YGCMVDLLGRCGKVLEAEELIKRMV-WKPD----VVMWGALLAACKNH----------GNIEVAERVVKEIIALEPNNH- 419 (818)
Q Consensus 356 ~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~Li~a~~~~----------g~~~~A~~~~~~~~~~~P~~~- 419 (818)
+..+...|.+.|++++|+..|+++. ..|+ ...+..+..+|... |++++|+..|+++++..|+++
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 5667888999999999999998872 2343 45777788888766 899999999999999999985
Q ss_pred --chHHHHHHHHHHhhchHHHH
Q 003457 420 --GVYVVLSNMYAEAESMKMQL 439 (818)
Q Consensus 420 --~~y~~L~~~l~~~G~~~eA~ 439 (818)
.++..+..++.+.++++++.
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 45666777777777776543
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.06 E-value=1.3e-08 Score=106.53 Aligned_cols=234 Identities=8% Similarity=-0.055 Sum_probs=157.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHH
Q 003457 191 YAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKA 270 (818)
Q Consensus 191 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A 270 (818)
..-.|.+..++.-..++.. .........+.+++...|+++.. ....|....+..+...+ ..+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 3445777777663333211 11223334455777777766532 11233333444343333 322 6
Q ss_pred HHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003457 271 KALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVP-NDITFVGVLSACCHAGFIDVGRQIFGSMKRV 346 (818)
Q Consensus 271 ~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~ 346 (818)
+..|++..+ ++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 86 ~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~ 165 (310)
T 3mv2_B 86 IEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA 165 (310)
T ss_dssp CHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 777776653 455566678888999999999999999887765422 4566777788999999999999999998764
Q ss_pred hCCCC-----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Q 003457 347 YGIEP-----KIEHYGCMVDL--LGRCG--KVLEAEELIKRMV-WKPDVVMWGALLAACKNHGNIEVAERVVKEIIAL-- 414 (818)
Q Consensus 347 ~g~~p-----~~~~~~~Li~~--~~~~g--~~~~A~~~~~~m~-~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~-- 414 (818)
.| +..+...|+.+ ....| ++.+|..+|+++. ..|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 166 ---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 ---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred ---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 55 34555566655 33344 8999999999984 3355333344445788999999999999987776
Q ss_pred --------CCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 415 --------EPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 415 --------~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
+|+++.++.+++.+....|+ +|.++++.+.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~ 280 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV 280 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH
Confidence 58899999888888888887 8888777664
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.05 E-value=2.8e-09 Score=112.57 Aligned_cols=221 Identities=10% Similarity=0.006 Sum_probs=135.6
Q ss_pred ChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhHHHHHH
Q 003457 165 DLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLME----GFEPN-SVTLASVLSACAQSGCLELGEKVH 239 (818)
Q Consensus 165 ~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~~~~~~g~~~~A~~i~ 239 (818)
++++|...|++. ...|...|++++|++.|++..+. +-+++ ..+|..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777776654 56677778888888777776543 21111 345556666666666666666666
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC-C-
Q 003457 240 VFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASH-GHAEEALDLFRKLEKEQIVP-N- 316 (818)
Q Consensus 240 ~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~-g~~~~A~~l~~~m~~~g~~p-d- 316 (818)
++.++. +.+.|+...+ ..+++.+...|... |++++|+..|++..+..... +
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 655532 1122332222 23566677777775 88888888888776531111 1
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH--
Q 003457 317 ---DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKI-----EHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDV-- 385 (818)
Q Consensus 317 ---~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~-----~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~-- 385 (818)
..++..+...+.+.|++++|...|+++.+...-.+.. ..+..+..++...|++++|++.|++. ...|+.
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 3456777788888888888888888877642111111 15667777788888888888888887 334432
Q ss_pred ----HHHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCcchH
Q 003457 386 ----VMWGALLAACK--NHGNIEVAERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 386 ----~~~~~Li~a~~--~~g~~~~A~~~~~~~~~~~P~~~~~y 422 (818)
..+..++.++. ..+++++|+..|+++..++|.....+
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 13444555554 35668888888888877777644333
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.02 E-value=2.1e-09 Score=111.29 Aligned_cols=219 Identities=13% Similarity=0.060 Sum_probs=152.2
Q ss_pred HhcCChhHHHHHHHHHHHc-------CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-----------CChhhHHHH
Q 003457 227 AQSGCLELGEKVHVFVKMR-------GFEMGAILGTALVHMYTKNGALAKAKALFDSMPE-----------RNIATWNAM 288 (818)
Q Consensus 227 ~~~g~~~~A~~i~~~~~~~-------g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-----------~d~~~~~~L 288 (818)
...|++++|...+++.++. ..+....++..+...|...|++++|...|+++.+ ....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877763 2233456788889999999999999999887652 134578888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc-----CC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------CCCCCHHH
Q 003457 289 ISGLASHGHAEEALDLFRKLEKE-----QI-VP-NDITFVGVLSACCHAGFIDVGRQIFGSMKRVY------GIEPKIEH 355 (818)
Q Consensus 289 i~~~~~~g~~~~A~~l~~~m~~~-----g~-~p-d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~------g~~p~~~~ 355 (818)
...|...|++++|+..|+++.+. +. .| ....+..+...|...|++++|...++++.+.. ..+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 12 24667788889999999999999999887641 11223567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHcC----------CCCC-HHHHHHHHHHHHHcC------CHHHHHHHHHHHHhcCCCC
Q 003457 356 YGCMVDLLGRCGKVLEAEELIKRMV----------WKPD-VVMWGALLAACKNHG------NIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 356 ~~~Li~~~~~~g~~~~A~~~~~~m~----------~~pd-~~~~~~Li~a~~~~g------~~~~A~~~~~~~~~~~P~~ 418 (818)
+..+...|.+.|++++|++.|+++. ..+. ...|..+...+...+ .+.++...++......|+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8888999999999999999998772 1222 233333333333322 2334444444433344666
Q ss_pred cchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 419 HGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 419 ~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
...+..++.+|.+.|++++|.++++..
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 778999999999999999999987765
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.01 E-value=1.9e-08 Score=101.53 Aligned_cols=176 Identities=7% Similarity=-0.044 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 003457 253 LGTALVHMYTKNGALAKAKALFDSMPE--RN----IATWNAMISGLASHGHAEEALDLFRKLEKEQIVPND--ITFVGVL 324 (818)
Q Consensus 253 ~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll 324 (818)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++++..+.... ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 334455556666666666666666553 21 234555666666666666666666666654322111 1333333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCH-H----------------
Q 003457 325 SACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDV-V---------------- 386 (818)
Q Consensus 325 ~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~-~---------------- 386 (818)
.++.+.+.. .+ ..+..+...+...|++++|++.|+++ ...|+. .
T Consensus 86 ~~~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~ 147 (225)
T 2yhc_A 86 LTNMALDDS-----AL-------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLA 147 (225)
T ss_dssp HHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhh-----hh-------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 343331100 00 00000111111234455555555544 222321 1
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 387 -MWGALLAACKNHGNIEVAERVVKEIIALEPNNH---GVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 387 -~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~---~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
....+...|.+.|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++.+.
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 113456678899999999999999999999975 679999999999999999999887773
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=3.3e-09 Score=112.00 Aligned_cols=200 Identities=12% Similarity=0.029 Sum_probs=144.8
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-------C--ChhhHHHHHHHHHHcCCHHHH
Q 003457 231 CLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE-------R--NIATWNAMISGLASHGHAEEA 301 (818)
Q Consensus 231 ~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-------~--d~~~~~~Li~~~~~~g~~~~A 301 (818)
++++|...+.++ +..|...|++++|.+.|++..+ + ...+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 3456778888888888876653 1 145788899999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHH
Q 003457 302 LDLFRKLEKEQIV-PN----DITFVGVLSACCHA-GFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLE 371 (818)
Q Consensus 302 ~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~-g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~ 371 (818)
+..|++.++.... .+ ..++..+..+|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999988753111 11 35788889999996 9999999999998865211112 4578899999999999999
Q ss_pred HHHHHHHcC-CCCC---H-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--Hhhch
Q 003457 372 AEELIKRMV-WKPD---V-----VMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGV-----YVVLSNMYA--EAESM 435 (818)
Q Consensus 372 A~~~~~~m~-~~pd---~-----~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~-----y~~L~~~l~--~~G~~ 435 (818)
|++.|+++. ..|+ . ..|..+..++...|++++|+..|+++++++|+.... +..++..+. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 999999872 2222 1 257778888999999999999999999999986543 344555554 45678
Q ss_pred HHHHHHHHHH
Q 003457 436 KMQLEILLVQ 445 (818)
Q Consensus 436 ~eA~~l~~~~ 445 (818)
++|++.++.+
T Consensus 257 ~~A~~~~~~~ 266 (292)
T 1qqe_A 257 SEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHhccC
Confidence 8888876443
No 92
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=8.8e-09 Score=106.48 Aligned_cols=226 Identities=13% Similarity=0.035 Sum_probs=120.8
Q ss_pred hCCChHHHHHHHHHhhc-------CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 003457 162 VSSDLNNARQVFDEIRN-------RT----LNVWTTMISGYAQSFRANEALMLFDQMLME------GFEP-NSVTLASVL 223 (818)
Q Consensus 162 ~~g~~~~A~~l~~~m~~-------~d----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~t~~~ll 223 (818)
..|++++|++.|++..+ .+ ..++..+...|...|++++|+..++++++. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 44555555555544332 11 224555666666666666666666665433 1111 223444444
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhC--C--CCChhhHHHHHHHHHHcCCHH
Q 003457 224 SACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSM--P--ERNIATWNAMISGLASHGHAE 299 (818)
Q Consensus 224 ~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m--~--~~d~~~~~~Li~~~~~~g~~~ 299 (818)
..+...|++++|...++++.+.. ++. . ......+..+...|...|+++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 144 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKFHPDVAKQLNNLALLCQNQGKAE 144 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHH----------------------------HHHcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 55555555555555555544320 000 0 012345666667777777777
Q ss_pred HHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------CCCC-CHHHHHHHHHHHHH
Q 003457 300 EALDLFRKLEKE------QIVP-NDITFVGVLSACCHAGFIDVGRQIFGSMKRVY------GIEP-KIEHYGCMVDLLGR 365 (818)
Q Consensus 300 ~A~~l~~~m~~~------g~~p-d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~------g~~p-~~~~~~~Li~~~~~ 365 (818)
+|+..++++.+. +..| ...++..+..+|...|++++|...++++.+.. ...+ ....+..+...+..
T Consensus 145 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (283)
T 3edt_B 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREES 224 (283)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhc
Confidence 777777776653 1122 23566677778888888888888888776531 0111 22233333333333
Q ss_pred cC------CHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 003457 366 CG------KVLEAEELIKRMVW-KP-DVVMWGALLAACKNHGNIEVAERVVKEIIALE 415 (818)
Q Consensus 366 ~g------~~~~A~~~~~~m~~-~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~ 415 (818)
.+ .+.++...++.... .| ...++..+...|...|++++|++++++++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 225 KDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp TCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 22 24455555555532 23 35678888999999999999999999988753
No 93
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.99 E-value=2.3e-09 Score=127.17 Aligned_cols=169 Identities=11% Similarity=-0.028 Sum_probs=144.6
Q ss_pred HhCCCHHHHHHHHhhCC--------C---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003457 262 TKNGALAKAKALFDSMP--------E---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHA 330 (818)
Q Consensus 262 ~~~g~~~~A~~~f~~m~--------~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 330 (818)
...|++++|++.|++.. + .+...|..+...|.+.|++++|++.|+++.+.... +...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 67899999999998876 2 46678888999999999999999999999886433 677888899999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 331 GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVV 408 (818)
Q Consensus 331 g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~ 408 (818)
|++++|++.|+++.+. .+.+...+..+..+|.+.|++++ ++.|+++ ...| +...|..+..++.+.|++++|++.|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999999876 45567889999999999999999 9999988 3445 5788999999999999999999999
Q ss_pred HHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 409 KEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 409 ~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
+++++++|++..++..++.+|.+.|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999877555
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.1e-08 Score=92.47 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=56.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCH
Q 003457 324 LSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNI 401 (818)
Q Consensus 324 l~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~ 401 (818)
...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.+.|+++. ...+...+..+...+...|++
T Consensus 8 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 8 GNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCH
Confidence 33344444444444444444332 12233344444444444444444444444431 112344444455555555555
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 402 EVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 402 ~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
++|++.++++++..|++...+..++.++.+.|++++|.+.++.+
T Consensus 86 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 86 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555544433
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=1.9e-08 Score=100.31 Aligned_cols=180 Identities=9% Similarity=-0.044 Sum_probs=126.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCC
Q 003457 218 TLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGH 297 (818)
Q Consensus 218 t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~ 297 (818)
.+......+...|++++|...|+++++.. +.+...+.. ...... .......++.+..+|.+.|+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~-----~~~~~~----------~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYW-----TNVDKN----------SEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHH-----HHSCTT----------SHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHH-----hhhcch----------hhhhHHHHHHHHHHHHHCCC
Confidence 34444555667777777777777777653 111111111 000000 00112234458889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC--HHHHHHH
Q 003457 298 AEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGK--VLEAEEL 375 (818)
Q Consensus 298 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~--~~~A~~~ 375 (818)
+++|+..|++.++..+. +...+..+..++...|++++|...|+++++. .+.+...+..+...|...|+ .+++...
T Consensus 70 ~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~ 146 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETD 146 (208)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999987533 6788899999999999999999999999986 45568899999988876654 4556677
Q ss_pred HHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 376 IKRMVWKPD--VVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 376 ~~~m~~~pd--~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
+++.. .|+ ...+..+..++...|++++|+..|++++++.|+
T Consensus 147 ~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 147 YKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 77764 344 334555666778899999999999999999998
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=8.9e-11 Score=110.89 Aligned_cols=139 Identities=12% Similarity=0.014 Sum_probs=69.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH
Q 003457 291 GLASHGHAEEALDLFRKLEKEQIVPN-DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKV 369 (818)
Q Consensus 291 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~ 369 (818)
.+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++++. .+.+...|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 334445555555555554432 111 223334455555555555555555555543 233455555555555555555
Q ss_pred HHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 370 LEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERV-VKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 370 ~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~-~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
++|+..|+++ ...| +...|..+...|.+.|++++|.+. ++++++++|+++.+|.....++.+.|
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 5555555554 2233 344555555555555555444333 35555555555555555555554444
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.98 E-value=7.3e-10 Score=104.53 Aligned_cols=113 Identities=10% Similarity=-0.022 Sum_probs=68.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCH
Q 003457 325 SACCHAGFIDVGRQIFGSMKRVYGIEP-KIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNI 401 (818)
Q Consensus 325 ~a~~~~g~~~~A~~~~~~m~~~~g~~p-~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~ 401 (818)
..+...|++++|+..++.... ..| +...+..+...|.+.|++++|++.|+++ ...| +..+|..+..+|.+.|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 344455666666666665442 222 2334455666666667777776666665 2333 456666666666666667
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 402 EVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 402 ~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
++|+..|+++++++|+++.++..++.+|.+.|++++|.+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 777776766666666666666666666666666666554
No 98
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.96 E-value=5.2e-09 Score=121.55 Aligned_cols=160 Identities=9% Similarity=0.012 Sum_probs=118.4
Q ss_pred CCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 003457 264 NGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIF 340 (818)
Q Consensus 264 ~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~ 340 (818)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.... +...+..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678888888888775 35678888888899999999999999988876432 5677888888889999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcC
Q 003457 341 GSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNH---GNIEVAERVVKEIIALE 415 (818)
Q Consensus 341 ~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~---g~~~~A~~~~~~~~~~~ 415 (818)
++..+. .+.+...+..+..+|.+.|++++|++.|+++ ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 988876 4556788888888899999999999998887 2334 577888888888888 89999999999999999
Q ss_pred CCCcchHHHHH
Q 003457 416 PNNHGVYVVLS 426 (818)
Q Consensus 416 P~~~~~y~~L~ 426 (818)
|++...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98888877766
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=1.5e-08 Score=106.73 Aligned_cols=174 Identities=11% Similarity=0.007 Sum_probs=140.4
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 003457 268 AKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVY 347 (818)
Q Consensus 268 ~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~ 347 (818)
+...+.+......+...+..+...+.+.|++++|+..|+++.+..+. +...+..+..++.+.|++++|...++++.+.
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 34445555555556667788888899999999999999999887433 5678888899999999999999999998754
Q ss_pred CCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--cchH
Q 003457 348 GIEPKIEHYG-CMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN--HGVY 422 (818)
Q Consensus 348 g~~p~~~~~~-~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~--~~~y 422 (818)
.|+..... .....+.+.++.++|++.|+++ ...| +...+..+...+...|++++|++.|+++++.+|++ ..++
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 45544333 3333467788888899999887 3345 58899999999999999999999999999999998 8899
Q ss_pred HHHHHHHHHhhchHHHHHHHHHH
Q 003457 423 VVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 423 ~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
..|+.+|...|+.++|...++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHH
Confidence 99999999999999999965554
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.95 E-value=3.6e-08 Score=89.00 Aligned_cols=132 Identities=15% Similarity=0.202 Sum_probs=112.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 003457 283 ATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDL 362 (818)
Q Consensus 283 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~ 362 (818)
..|..+...+...|++++|+.+++++.+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHH
Confidence 3577788889999999999999999987643 36777888888999999999999999998876 45567888899999
Q ss_pred HHHcCCHHHHHHHHHHcC-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 363 LGRCGKVLEAEELIKRMV-W-KPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 363 ~~~~g~~~~A~~~~~~m~-~-~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
+.+.|++++|.+.++++. . ..+...+..++..+.+.|++++|.+.++++++..|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999872 2 335788888999999999999999999999999886
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.89 E-value=4.3e-08 Score=116.27 Aligned_cols=191 Identities=12% Similarity=-0.020 Sum_probs=143.9
Q ss_pred HhcCChhHHHHHHHHHH--------HcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHc
Q 003457 227 AQSGCLELGEKVHVFVK--------MRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASH 295 (818)
Q Consensus 227 ~~~g~~~~A~~i~~~~~--------~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~ 295 (818)
...|++++|.+.+++++ +.. +.+...+..+..+|.+.|++++|.+.|+++.+ .+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788889988888887 433 45667788888889999999999999988775 4677888899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 003457 296 GHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEEL 375 (818)
Q Consensus 296 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~ 375 (818)
|++++|++.|++..+..+. +...+..+..++.+.|++++ ++.|+++.+. .+.+...|..+..+|.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999887433 56778888889999999999 9999998875 455678889999999999999999999
Q ss_pred HHHcC-CCCC-HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCCCCcchH
Q 003457 376 IKRMV-WKPD-VVMWGALLAACKNHGN-----IEVAERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 376 ~~~m~-~~pd-~~~~~~Li~a~~~~g~-----~~~A~~~~~~~~~~~P~~~~~y 422 (818)
|+++. ..|+ ...+..+..++...++ .++..+..+...++.++++...
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99983 5565 5677777777766555 2333333344444445544433
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=1.7e-07 Score=98.11 Aligned_cols=240 Identities=7% Similarity=-0.012 Sum_probs=162.1
Q ss_pred HHhCCChHHHHHHHHHhhcCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 003457 160 YSVSSDLNNARQVFDEIRNRT-LNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKV 238 (818)
Q Consensus 160 y~~~g~~~~A~~l~~~m~~~d-~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i 238 (818)
..-.|.+..++.-..++...+ ...-..+.++|...|+++... .-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 334566666666444443222 223334557777777766321 1234433433333322 221 5667
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC-----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 003457 239 HVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE-----RNIATWNAMISGLASHGHAEEALDLFRKLEKEQI 313 (818)
Q Consensus 239 ~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~-----~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~ 313 (818)
+++.+..+ +++......+..++...|++++|++++.+..+ .+...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 77766654 44455556788888888999999999888743 24567778888999999999999999999876
Q ss_pred CC-----CHHHHHHHHHHH--HHcC--CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCC---
Q 003457 314 VP-----NDITFVGVLSAC--CHAG--FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVW--- 381 (818)
Q Consensus 314 ~p-----d~~t~~~ll~a~--~~~g--~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~--- 381 (818)
.| +..+...+..++ ...| ++++|..+|+++... .|+......+..++.+.|++++|.+.++.+..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 55 356666666663 3334 899999999998754 45533434445588999999999999987621
Q ss_pred --------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcch
Q 003457 382 --------KP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGV 421 (818)
Q Consensus 382 --------~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~ 421 (818)
.| |..++..++......|+ +|.++++++.+..|+++-.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 24 56777678777778887 8999999999999997643
No 103
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=5e-09 Score=95.54 Aligned_cols=91 Identities=9% Similarity=-0.025 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 003457 355 HYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEA 432 (818)
Q Consensus 355 ~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~ 432 (818)
.+..+...|.+.|++++|++.|+++ ...| +...|..+..+|.+.|++++|++.++++++++|++..+|..++.+|.+.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444445555555555555555544 1222 3455555555555555555555555555555555555555555555555
Q ss_pred hchHHHHHHHHHH
Q 003457 433 ESMKMQLEILLVQ 445 (818)
Q Consensus 433 G~~~eA~~l~~~~ 445 (818)
|++++|++.++..
T Consensus 95 ~~~~~A~~~~~~a 107 (126)
T 4gco_A 95 REWSKAQRAYEDA 107 (126)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5555555544443
No 104
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.86 E-value=4e-08 Score=97.97 Aligned_cols=158 Identities=9% Similarity=-0.027 Sum_probs=116.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHhC
Q 003457 285 WNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVG----------------VLSACCHAGFIDVGRQIFGSMKRVYG 348 (818)
Q Consensus 285 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~----------------ll~a~~~~g~~~~A~~~~~~m~~~~g 348 (818)
+......+.+.|++++|+..|++.++..+. +...+.. +..++.+.|++++|+..|++.++.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 334455566777777777777777665211 2334444 888999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCCcchHHH
Q 003457 349 IEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGN--IEVAERVVKEIIALEPNNHGVYVV 424 (818)
Q Consensus 349 ~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~--~~~A~~~~~~~~~~~P~~~~~y~~ 424 (818)
.+.+...+..+..+|...|++++|++.|+++ ...| +...+..+...|...|+ .+.+...++++....|. ...+..
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 162 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYR 162 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHH
Confidence 4557889999999999999999999999998 3445 57888888888766553 45566777776544333 235667
Q ss_pred HHHHHHHhhchHHHHHHHHHHH
Q 003457 425 LSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 425 L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
++.++...|++++|++.++..+
T Consensus 163 ~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 163 DGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 7888899999999999877773
No 105
>2zex_A S-layer associated multidomain endoglucanase; family 16 CBM-1 cellopentaose complex, glycosidase, hydrolase; HET: BGC; 1.20A {Thermoanaerobacteriumpolysaccharolyticum} PDB: 2zew_A 2zey_A* 3oea_A* 3oeb_A*
Probab=98.86 E-value=1.4e-08 Score=95.13 Aligned_cols=137 Identities=19% Similarity=0.179 Sum_probs=80.9
Q ss_pred CCCcccCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEEeceeee-ecCCceeccCCCeeEEecC--Cccceeeeec
Q 003457 628 NDNLLLNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSVIGTVKY-IDSKHFYVPKGNAAIEIVS--VSAGIQTATT 704 (818)
Q Consensus 628 ~~~l~~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~v~~-i~~~~~~~~~g~~~~~l~~--~~~~~q~~~~ 704 (818)
..|||.||+||+| +.||+..|.... +.+ .+-.|.+++++.+ .+.+.|++.
T Consensus 4 ~~Nli~N~~FE~g-----------------------~~~W~~~~~~~~~~~~---~~~~G~~~l~~~~~~~~~~~Q~v~- 56 (147)
T 2zex_A 4 MVNMVSNPGFEDG-----------------------LDSWQDWQQDMSAVPE---AAHNGALGLKIGGGKAAGGGQDIP- 56 (147)
T ss_dssp CEECCSSTTSTTT-----------------------TTTCEETTSCEEEEGG---GCSSSSCEEEECSSSCEEEEEECC-
T ss_pred ccceecCCCcccC-----------------------ccCCcCcCCceeEEec---cccCCceEEEEcCCCCccEeEEEE-
Confidence 4599999999985 236777543111 221 2447899998855 356679999
Q ss_pred cccCCCeEEEEEecCcccCccccceEEEEeeC--CcceeeEEEe--cccCCceeeeEEEEeccceeeEEEEeCcccccCC
Q 003457 705 MLTEGSAYNLDFTLGDAKDACEGMFVVRVQAG--SLVQNFTVQS--LGTGSVIKHSVTFKAGSGSTPISFISYNINQTKD 780 (818)
Q Consensus 705 ~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~f~a~~~~~~~~f~~~~~~~~~~ 780 (818)
+.||..|+|+|.+-..+ ...+.-.+.|.+. +........+ ..+.+|...+..|++....+.+.|.-........
T Consensus 57 -v~~~~~Y~ls~wvk~~~-~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~W~~~s~~ftt~~~~~~~~~~~~~~~~~~~ 134 (147)
T 2zex_A 57 -LKPNTTYILGAWAKFDS-KPAGTFDVVVQYHLKDANNTYVQHILNFNETDWTYKQLLFTTPDVFGSTPQLALWKGDTSK 134 (147)
T ss_dssp -CCTTCEEEEEEEEEESS-CCSSCEEEEEEEEBSSTTCCEEEEEEEECCSSCEEEEEEEECCSSBSSCCEEEEEECCCSS
T ss_pred -ECCCCEEEEEEEEEecc-CCCceEEEEEEEeeCCCCCcEEEeEeeeCCCCcEEEEEEEEcCCCCceEEEEEEEecCCCc
Confidence 89999999999863211 1122223444432 1112221222 2367899999999987765543222111111111
Q ss_pred CCccccccceeeeeec
Q 003457 781 GVFCGPLIDDVVLRAS 796 (818)
Q Consensus 781 ~~~~gp~~d~v~~~~~ 796 (818)
.--.||||+|+.+
T Consensus 135 ---~~~~iDDv~l~~v 147 (147)
T 2zex_A 135 ---ANLYVDDVYLVEV 147 (147)
T ss_dssp ---CCEEEEEEEEEEC
T ss_pred ---ceEEEEeEEEEEC
Confidence 3358999999764
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=6.2e-08 Score=102.96 Aligned_cols=178 Identities=16% Similarity=0.122 Sum_probs=121.1
Q ss_pred HHHhCCCHHHHHHHHhhCCC-----C----ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHH
Q 003457 260 MYTKNGALAKAKALFDSMPE-----R----NIATWNAMISGLASHGHAEEALDLFRKLEKEQI---VPN--DITFVGVLS 325 (818)
Q Consensus 260 ~~~~~g~~~~A~~~f~~m~~-----~----d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~ 325 (818)
.|...|++++|.+.|.+..+ . -...|+.+...|.+.|++++|+..|++..+.-. .+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555555544432 0 124677777888888888888888887764311 111 346777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCCC----HHHHHHHHH
Q 003457 326 ACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAEELIKRMV----WKPD----VVMWGALLA 393 (818)
Q Consensus 326 a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~pd----~~~~~~Li~ 393 (818)
+|.. |++++|+..|++.++...-..+ ..++..+...|.+.|++++|++.|+++. ..++ ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 8888 9999999999987765211111 4678889999999999999999998873 1122 236667777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcch-----HHHHHHHHHHhhchHHHHH
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPNNHGV-----YVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~~~~~-----y~~L~~~l~~~G~~~eA~~ 440 (818)
.+...|++++|+..|++++ +.|+.... ...++..+ +.|+.+++.+
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 7888899999999999999 99976543 33444444 4566655554
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.84 E-value=6.1e-08 Score=112.46 Aligned_cols=148 Identities=13% Similarity=0.021 Sum_probs=107.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003457 295 HGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEE 374 (818)
Q Consensus 295 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~ 374 (818)
.|++++|++.|+++.+... -+...+..+...+.+.|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4678889999988877532 25677888888888999999999999988764 34457888888889999999999999
Q ss_pred HHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh---hchHHHHHHHHHH
Q 003457 375 LIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEA---ESMKMQLEILLVQ 445 (818)
Q Consensus 375 ~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~---G~~~eA~~l~~~~ 445 (818)
.|+++ ...| +...+..+...|.+.|++++|++.++++++++|++...+..++.++.+. |++++|.+.++..
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99887 2334 5778888888899999999999999999999999888999999999998 8899998866554
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.82 E-value=1.3e-07 Score=94.58 Aligned_cols=167 Identities=12% Similarity=0.002 Sum_probs=123.9
Q ss_pred HHHHHhhCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 003457 270 AKALFDSMPE-RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAG----FIDVGRQIFGSMK 344 (818)
Q Consensus 270 A~~~f~~m~~-~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~A~~~~~~m~ 344 (818)
|.+.|++..+ .++..+..|...|...+++++|+..|++..+.| +...+..|...|.. + ++++|.+.|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344443332 466677777777777888888888888887764 55666677777766 5 7888888888876
Q ss_pred HHhCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHcCCCCC----HHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 003457 345 RVYGIEPKIEHYGCMVDLLGR----CGKVLEAEELIKRMVWKPD----VVMWGALLAACKN----HGNIEVAERVVKEII 412 (818)
Q Consensus 345 ~~~g~~p~~~~~~~Li~~~~~----~g~~~~A~~~~~~m~~~pd----~~~~~~Li~a~~~----~g~~~~A~~~~~~~~ 412 (818)
+. .+...+..|..+|.. .+++++|++.|+++....+ ...+..|...|.. .+++++|+++|+++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 466777788877876 7888888888888853333 7788888888887 778899999998888
Q ss_pred hcCCCCcchHHHHHHHHHHh-h-----chHHHHHHHHHH
Q 003457 413 ALEPNNHGVYVVLSNMYAEA-E-----SMKMQLEILLVQ 445 (818)
Q Consensus 413 ~~~P~~~~~y~~L~~~l~~~-G-----~~~eA~~l~~~~ 445 (818)
+. |.++.++..|+.+|.+. | ++++|++.++..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 87 55677888888888765 3 788888876655
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=2.8e-08 Score=105.57 Aligned_cols=195 Identities=6% Similarity=-0.065 Sum_probs=147.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 229 SGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKL 308 (818)
Q Consensus 229 ~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m 308 (818)
.|++++|.+++++..+... .. .+...+++++|...|.+ ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 4566778888777766421 11 01115788888887664 366788999999999999987
Q ss_pred HHcCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 309 EKEQIVP-N----DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 309 ~~~g~~p-d----~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
.+..... + ..+|..+..+|.+.|++++|+..|++..+.+....+ ..++..+...|.+ |++++|++.|+++
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 6531111 1 357888889999999999999999998765322222 4578888899988 9999999999987
Q ss_pred C-CC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 380 V-WK---PD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNH------GVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 380 ~-~~---pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~------~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
. .. .+ ..++..+...|.+.|++++|++.|++++++.|++. ..+..++.++...|++++|.+.++..
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 11 11 46788899999999999999999999999876543 36778888899999999999988887
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.81 E-value=2.8e-08 Score=96.05 Aligned_cols=154 Identities=11% Similarity=0.085 Sum_probs=89.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHc
Q 003457 288 MISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDL-LGRC 366 (818)
Q Consensus 288 Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~-~~~~ 366 (818)
+...+.+.|++++|+..|+++.+..+ -+...+..+..++...|++++|+..++++.+. .|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 33444444555555555544433211 13344444444455555555555555444332 1122222211111 1111
Q ss_pred CCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHHhhchHHHHHHH
Q 003457 367 GKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN--HGVYVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 367 g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~--~~~y~~L~~~l~~~G~~~eA~~l~ 442 (818)
++..+|++.|+++ ...| +...+..+...+...|++++|+..|+++++.+|+. ...+..++.++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2223356666665 2345 57888888888999999999999999999999875 458889999999999999999866
Q ss_pred HHH
Q 003457 443 LVQ 445 (818)
Q Consensus 443 ~~~ 445 (818)
+..
T Consensus 168 ~~a 170 (176)
T 2r5s_A 168 RRQ 170 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 111
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.80 E-value=8.7e-06 Score=92.28 Aligned_cols=352 Identities=12% Similarity=-0.025 Sum_probs=208.9
Q ss_pred hHHHHHHHHHhhhhcCCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHhCCC-hhHHHHHHHHHHHc-CCCC-CHHHHHHH
Q 003457 47 HFAASRLLAFCALSSSGDLSYATRLFNSIQS--PNHFMWNTLIRAQASSLN-PDKAIFLYMNMRRT-GFAP-NQHTFTFV 121 (818)
Q Consensus 47 ~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~--p~~~~yn~Li~~~~~~g~-~~~Al~lf~~m~~~-g~~p-d~~ty~~l 121 (818)
..+|...+..+ -.|+.+.+..+|++... |+...|..-+....+.+. .+....+|+..... |..| +...|...
T Consensus 15 R~vyer~l~~~---P~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLY---MSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHH---HTTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 44555555555 23889999999998773 899999988888777663 45667788877764 4333 55667666
Q ss_pred HHHHH----ccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------------CCChHHHHHHHHHhhc----CC
Q 003457 122 LKACS----NVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSV-------------SSDLNNARQVFDEIRN----RT 180 (818)
Q Consensus 122 l~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~-------------~g~~~~A~~l~~~m~~----~d 180 (818)
+..+. ..++.+.+.++|+.+++.....-...|......-.. ...+..|..+++.+.. .+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 66543 235678899999999874322112233322221111 1122333444433322 13
Q ss_pred HHHHHHHHHHHHHcC--C-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHH
Q 003457 181 LNVWTTMISGYAQSF--R-----ANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAIL 253 (818)
Q Consensus 181 ~~~~~~Li~~~~~~g--~-----~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~ 253 (818)
...|...+.--...+ - .+.+..+|++++... +-+...|...+..+.+.|+.++|..+++++++. +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 335555444322211 1 345677888888753 556777777777788889999999999999988 444433
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCC--C----------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 003457 254 GTALVHMYTKNGALAKAKALFDSMP--E----------RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFV 321 (818)
Q Consensus 254 ~~~Li~~~~~~g~~~~A~~~f~~m~--~----------~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 321 (818)
+...+.. .+.++. ...+.+... + .....|...+..+.+.++.+.|..+|+++ +. ...+...|.
T Consensus 249 ~~~y~~~-~e~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i 323 (493)
T 2uy1_A 249 SLYYGLV-MDEEAV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFI 323 (493)
T ss_dssp HHHHHHH-TTCTHH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHH
T ss_pred HHHHHhh-cchhHH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHH
Confidence 3322111 111111 112222111 0 11235666666666677788888888888 32 223444443
Q ss_pred HHHHHHHH-cCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 003457 322 GVLSACCH-AGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGN 400 (818)
Q Consensus 322 ~ll~a~~~-~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~ 400 (818)
.....-.. .++.+.|..+|+...+. .+.+...+...++...+.|+.+.|..+|+++. .....|...+.--...|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCC
Confidence 22222222 23688888888888776 33345556667777778888888888888873 246677777776667788
Q ss_pred HHHHHHHHHHHHh
Q 003457 401 IEVAERVVKEIIA 413 (818)
Q Consensus 401 ~~~A~~~~~~~~~ 413 (818)
.+.+..+++++.+
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877764
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.80 E-value=3.5e-07 Score=96.56 Aligned_cols=222 Identities=9% Similarity=0.035 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH----HhC---CCH
Q 003457 197 ANEALMLFDQMLMEGFEPNSVTLASVLSACAQSG--CLELGEKVHVFVKMRGFEMGAILGTALVHMY----TKN---GAL 267 (818)
Q Consensus 197 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g--~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~----~~~---g~~ 267 (818)
.++|++++++++... +-+...|+.--.++...+ +++++.+.++.++... +.+..+++.-...+ .+. +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 346666666666553 333444555555555555 6666666666666554 33333333322222 222 344
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------HHHH
Q 003457 268 AKAKALFDSMPE---RNIATWNAMISGLASHGHAE--EALDLFRKLEKEQIVPNDITFVGVLSACCHAGF------IDVG 336 (818)
Q Consensus 268 ~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~------~~~A 336 (818)
++++++++++.+ ++..+|+.-.-.+.+.++++ ++++.++++++..++ |...++.-...+.+.+. ++++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 445444444442 23344444444444444444 444555554444332 33444433333333333 4444
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHcC-C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003457 337 RQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLE-AEELIKRMV-W----KPDVVMWGALLAACKNHGNIEVAERVVKE 410 (818)
Q Consensus 337 ~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~-A~~~~~~m~-~----~pd~~~~~~Li~a~~~~g~~~~A~~~~~~ 410 (818)
++.+++++.. .+-|...|+.+...+.+.|+..+ +.++.+++. . ..+...+..++..|.+.|+.++|++++++
T Consensus 206 l~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 4444444433 33344444444444444444222 222333321 0 12334444444444444444444444444
Q ss_pred HHh-cCCCCcchHH
Q 003457 411 IIA-LEPNNHGVYV 423 (818)
Q Consensus 411 ~~~-~~P~~~~~y~ 423 (818)
+.+ .+|-....|.
T Consensus 284 l~~~~Dpir~~yW~ 297 (306)
T 3dra_A 284 LKSKYNPIRSNFWD 297 (306)
T ss_dssp HHHTTCGGGHHHHH
T ss_pred HHhccChHHHHHHH
Confidence 443 3444333333
No 113
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=8.8e-08 Score=87.19 Aligned_cols=110 Identities=9% Similarity=-0.029 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAAC 395 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~ 395 (818)
..+...+..|.+.|++++|++.|++.++. .+.+...|..+..+|.+.|++++|++.|+++ ...| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45677888899999999999999998876 5567889999999999999999999999988 3344 588999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMY 429 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l 429 (818)
...|++++|++.|+++++++|++.+++..|+.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999988887654
No 114
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=1.5e-06 Score=91.65 Aligned_cols=210 Identities=10% Similarity=0.017 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCC--CHHHHHHHHhhCCC---CChhhHHHHHHHH----HHc---CCHH
Q 003457 232 LELGEKVHVFVKMRGFEMGAILGTALVHMYTKNG--ALAKAKALFDSMPE---RNIATWNAMISGL----ASH---GHAE 299 (818)
Q Consensus 232 ~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g--~~~~A~~~f~~m~~---~d~~~~~~Li~~~----~~~---g~~~ 299 (818)
.++|.+.++.++..+ +.+..+++.-..++...+ +++++++.++.+.. .+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 356667777776664 445556666666666666 77777777776654 3445565554444 444 5677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC------HHH
Q 003457 300 EALDLFRKLEKEQIVPNDITFVGVLSACCHAGFID--VGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGK------VLE 371 (818)
Q Consensus 300 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~--~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~------~~~ 371 (818)
+++++++++.+...+ +..+++.-..++.+.++++ ++++.++++++. .+.|...|+.....+.+.++ +++
T Consensus 128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 777777777766444 5666666666666666666 777777777765 44566666666666666655 677
Q ss_pred HHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcC---CCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 372 AEELIKRM-VWKP-DVVMWGALLAACKNHGNIEV-AERVVKEIIALE---PNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 372 A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~-A~~~~~~~~~~~---P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+++.++++ ...| |...|+.+...+.+.|+..+ ...+.+++++++ |.++.++..++++|.+.|+.++|.++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 77777666 2233 56677766666666666333 444556666554 666677777777777777777777765554
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=1.4e-07 Score=95.17 Aligned_cols=187 Identities=17% Similarity=0.024 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CC-h---hhHH
Q 003457 215 NSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEM--GAILGTALVHMYTKNGALAKAKALFDSMPE--RN-I---ATWN 286 (818)
Q Consensus 215 d~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~--~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d-~---~~~~ 286 (818)
+...+..+...+.+.|++++|...|+++++..... ....+..++.+|.+.|++++|+..|+++.+ |+ . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44556667788899999999999999999874221 235777889999999999999999999874 32 2 2455
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Q 003457 287 AMISGLAS------------------HGHAEEALDLFRKLEKEQIVPND-ITFVGVLSACCHAGFIDVGRQIFGSMKRVY 347 (818)
Q Consensus 287 ~Li~~~~~------------------~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~ 347 (818)
.+..++.+ .|++++|+..|+++++.. |+. ........ ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----------HHHHHHHHH---
Confidence 56666654 456777777777776652 222 11111100 000011110
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 003457 348 GIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 348 g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y 422 (818)
.....+...|.+.|++++|+..|+++. ..|+ ...+..+..++.+.|+.++|++.++++....|++.+++
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 221 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH 221 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence 112356778899999999999999883 3354 25688889999999999999999999999999977654
No 116
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=1.5e-07 Score=90.90 Aligned_cols=156 Identities=11% Similarity=-0.023 Sum_probs=116.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHH
Q 003457 254 GTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSA-CCH 329 (818)
Q Consensus 254 ~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~ 329 (818)
...+...+.+.|++++|...|+++.+ .+...+..+...+.+.|++++|+..|+++.+..+ +......+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence 34566778888888899888888875 4667788888888889999999998888776533 44333322212 222
Q ss_pred cCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 003457 330 AGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD---VVMWGALLAACKNHGNIEVAE 405 (818)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd---~~~~~~Li~a~~~~g~~~~A~ 405 (818)
.+....|...+++..+. .+.+...+..+...|...|++++|++.|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22334567888888775 4456888899999999999999999999887 44554 568888899999999999999
Q ss_pred HHHHHHHh
Q 003457 406 RVVKEIIA 413 (818)
Q Consensus 406 ~~~~~~~~ 413 (818)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.75 E-value=3.2e-08 Score=93.28 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
...+..+...+.+.|++++|++.|+++ ...| +...|..+..+|...|++++|++.|+++++++|+++..|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 456667777777888888888888777 2344 57777888888888888888888888888888888888888888888
Q ss_pred HhhchHHHHHHHHHHH
Q 003457 431 EAESMKMQLEILLVQV 446 (818)
Q Consensus 431 ~~G~~~eA~~l~~~~~ 446 (818)
+.|++++|++.++..+
T Consensus 116 ~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 116 RLKAPLKAKECFELVI 131 (151)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 8888888888666553
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.72 E-value=1.6e-08 Score=94.99 Aligned_cols=93 Identities=11% Similarity=0.048 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
...+..+...+.+.|++++|++.|+++ ...| +...|..+..+|...|++++|++.|+++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444555566666666666666666665 2223 45566666666666666666666666666666666666666666666
Q ss_pred HhhchHHHHHHHHHH
Q 003457 431 EAESMKMQLEILLVQ 445 (818)
Q Consensus 431 ~~G~~~eA~~l~~~~ 445 (818)
..|++++|++.++..
T Consensus 101 ~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 101 QXGELAEAESGLFLA 115 (148)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 666666666655444
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.72 E-value=3.3e-07 Score=90.91 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHH
Q 003457 319 TFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP-DVVMWGALLAACK 396 (818)
Q Consensus 319 t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a~~ 396 (818)
.+..+...+...|++++|...|+++ ++|+...+..+...|.+.|++++|++.|+++. ..| +...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3445666777888888888888765 35677888888888888888888888888872 233 5788899999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCc----------------chHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 397 NHGNIEVAERVVKEIIALEPNNH----------------GVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~P~~~----------------~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
..|++++|++.|++++++.|++. ..+..++.+|.+.|++++|.+.++...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999888877 899999999999999999999877764
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.71 E-value=4.7e-07 Score=95.10 Aligned_cols=162 Identities=9% Similarity=-0.005 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC--CChhhHH-HHHHH
Q 003457 215 NSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE--RNIATWN-AMISG 291 (818)
Q Consensus 215 d~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~-~Li~~ 291 (818)
+...+..+...+.+.|++++|...++++++.. +.+...+..+..+|.+.|++++|...|+++.+ |+..... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 33445555556666666666666666666654 34455566666666666666666666666654 3222111 11222
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH
Q 003457 292 LASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLE 371 (818)
Q Consensus 292 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~ 371 (818)
+.+.++.++|+..|++..+..+ .+...+..+..++...|++++|...|+++.+...-..+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 4445555556666666555432 244555555566666666666666666655541111114455555555555555555
Q ss_pred HHHHHHH
Q 003457 372 AEELIKR 378 (818)
Q Consensus 372 A~~~~~~ 378 (818)
|...|++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=9.5e-07 Score=83.27 Aligned_cols=126 Identities=9% Similarity=-0.026 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAAC 395 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~ 395 (818)
..+..+...+...|++++|...|++..+. .+.+...+..+...|...|++++|++.|+++ ...| +...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34566677778888888888888887765 4456788888888888899999999888887 2234 578889999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH--HHHhhchHHHHHHHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALEPNNHGVYVVLSNM--YAEAESMKMQLEILLVQ 445 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~--l~~~G~~~eA~~l~~~~ 445 (818)
...|++++|++.+++++++.|++...+..+..+ +.+.|++++|++.++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 999999999999999999999988888555444 88899999999977665
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=7.8e-07 Score=88.14 Aligned_cols=126 Identities=12% Similarity=-0.030 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003457 287 AMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRC 366 (818)
Q Consensus 287 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~ 366 (818)
.+...+...|++++|+..|++.. .|+...+..+..++.+.|++++|...+++..+. .+.+...+..+..+|.+.
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHc
Confidence 34444455555555555554442 334445555555555555555555555555543 233445555555555555
Q ss_pred CCHHHHHHHHHHcC-----------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 367 GKVLEAEELIKRMV-----------------WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 367 g~~~~A~~~~~~m~-----------------~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
|++++|++.|+++. ..| ....+..+..+|.+.|++++|++.|++++++.|++
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 55555555555541 112 24778888999999999999999999999999985
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.67 E-value=1.5e-06 Score=86.79 Aligned_cols=169 Identities=8% Similarity=-0.047 Sum_probs=102.4
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHH
Q 003457 169 ARQVFDEIRNR-TLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSG----CLELGEKVHVFVK 243 (818)
Q Consensus 169 A~~l~~~m~~~-d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g----~~~~A~~i~~~~~ 243 (818)
|.+.|++..+. +..++..|...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.+.|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 44445444433 55566666666666666666666666666654 44555555555555 4 6666777666666
Q ss_pred HcCCCCcHHHHHHHHHHHHh----CCCHHHHHHHHhhCCCCC-----hhhHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 003457 244 MRGFEMGAILGTALVHMYTK----NGALAKAKALFDSMPERN-----IATWNAMISGLAS----HGHAEEALDLFRKLEK 310 (818)
Q Consensus 244 ~~g~~~~~~~~~~Li~~~~~----~g~~~~A~~~f~~m~~~d-----~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~ 310 (818)
+.+ +...+..|..+|.. .+++++|.+.|++..+.+ +.++..|...|.. .+++++|+.+|++..+
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 543 34455556666655 566777777777666532 4566667667766 6677777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHH
Q 003457 311 EQIVPNDITFVGVLSACCHA-G-----FIDVGRQIFGSMKRV 346 (818)
Q Consensus 311 ~g~~pd~~t~~~ll~a~~~~-g-----~~~~A~~~~~~m~~~ 346 (818)
. ..+...+..|...|... | ++++|...|++..+.
T Consensus 158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5 12334555566555543 2 677777777776654
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.66 E-value=6.2e-07 Score=79.68 Aligned_cols=115 Identities=17% Similarity=0.145 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 003457 317 DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAA 394 (818)
Q Consensus 317 ~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a 394 (818)
...+..+...+...|++++|.+.++++.+. .+.+...+..+...|.+.|++++|+..|+++. ...+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 456667777788888888888888887765 34567788888888888899999988888872 23467788889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 395 CKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
+...|++++|.+.++++++..|+++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999988887654
No 125
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.64 E-value=5.2e-07 Score=80.91 Aligned_cols=117 Identities=11% Similarity=0.056 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHH
Q 003457 317 DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP-DVVMWGALLAA 394 (818)
Q Consensus 317 ~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a 394 (818)
...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|++.++++. ..| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666677777888888888888887765 44567778888888888888888888888772 234 57788889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhch
Q 003457 395 CKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESM 435 (818)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~ 435 (818)
+...|++++|.+.+++++++.|++...+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988875
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.64 E-value=3.6e-06 Score=88.42 Aligned_cols=160 Identities=9% Similarity=-0.057 Sum_probs=120.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHH
Q 003457 287 AMISGLASHGHAEEALDLFRKLEKEQI-VPNDI----TFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYG 357 (818)
Q Consensus 287 ~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~----t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~ 357 (818)
..+..+...|++++|..++++..+... .|+.. .+..+...+...+++++|...++++.+...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999988876422 22211 2334566677778899999999998874222233 34688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcC-----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchH
Q 003457 358 CMVDLLGRCGKVLEAEELIKRMV-----WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNN------HGVY 422 (818)
Q Consensus 358 ~Li~~~~~~g~~~~A~~~~~~m~-----~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~------~~~y 422 (818)
.+...|...|++++|++.|+++. ...+ ..++..+...|.+.|++++|++.+++++++.++. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999888873 1112 3478889999999999999999999999865433 6789
Q ss_pred HHHHHHHHHhhc-hHHHHHHHHHHH
Q 003457 423 VVLSNMYAEAES-MKMQLEILLVQV 446 (818)
Q Consensus 423 ~~L~~~l~~~G~-~~eA~~l~~~~~ 446 (818)
..++.+|.+.|+ +++|.+.++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 699999776663
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.62 E-value=5.4e-07 Score=97.04 Aligned_cols=127 Identities=9% Similarity=-0.027 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHc-CC
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK---------------IEHYGCMVDLLGRCGKVLEAEELIKRM-VW 381 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~---------------~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~ 381 (818)
..+..+...|.+.|++++|...|++.++. .+.+ ...|..+..+|.+.|++++|++.|+++ ..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34444555555555555555555555543 1111 478889999999999999999999988 33
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH-HHHHHH
Q 003457 382 KP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE-ILLVQV 446 (818)
Q Consensus 382 ~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~-l~~~~~ 446 (818)
.| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.+.|++++|.+ +++.+.
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 688999999999999999999999999999999999999999999999999999966 666663
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.61 E-value=4.2e-07 Score=82.09 Aligned_cols=117 Identities=9% Similarity=-0.006 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHH
Q 003457 316 NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP-DVVMWGALLA 393 (818)
Q Consensus 316 d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~ 393 (818)
+...+..+...+.+.|++++|...++++.+. .+.+...+..+...|...|++++|++.|+++. ..| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3456667777777888888888888877653 34467777888888888888888888888772 233 5788888899
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
.+.+.|++++|++.+++++++.|++...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999887764
No 129
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.60 E-value=3.1e-07 Score=82.81 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 356 YGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 356 ~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
+..+...+.+.|++++|+..|+++ ...| +...|..+..++...|++++|+..|+++++++|+++..+..++.+|.+.|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 456677788999999999999988 3345 68889999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHH
Q 003457 434 SMKMQLEILLVQV 446 (818)
Q Consensus 434 ~~~eA~~l~~~~~ 446 (818)
++++|++.++..+
T Consensus 100 ~~~~A~~~~~~al 112 (121)
T 1hxi_A 100 NANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999777764
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=1.2e-07 Score=91.36 Aligned_cols=128 Identities=9% Similarity=0.083 Sum_probs=94.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-HHHcCCH-
Q 003457 292 LASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDL-LGRCGKV- 369 (818)
Q Consensus 292 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~-~~~~g~~- 369 (818)
+...|++++|+..+++..+... .+...+..+..+|...|++++|...|+++.+. .+.+...+..+..+ |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 3456788888888888877643 35677778888888888888888888888775 34467777778877 7788887
Q ss_pred -HHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 003457 370 -LEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 370 -~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y 422 (818)
++|++.|+++ ...| +...+..+...|...|++++|+..|++++++.|++....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888877 2334 467777888888888888888888888888888865543
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.60 E-value=1.1e-06 Score=92.38 Aligned_cols=162 Identities=9% Similarity=-0.040 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC--CCC--HH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQIVPND-----ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGI--EPK--IE 354 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~--~p~--~~ 354 (818)
.+...+..+...|++++|++.+++..+....... ..+..+...+...|++++|...+++..+.... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677788889999999988888775332111 22334556677788999999999887753111 111 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcC----CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------Cc
Q 003457 355 HYGCMVDLLGRCGKVLEAEELIKRMV----WKPD-----VVMWGALLAACKNHGNIEVAERVVKEIIALEPN------NH 419 (818)
Q Consensus 355 ~~~~Li~~~~~~g~~~~A~~~~~~m~----~~pd-----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~------~~ 419 (818)
+++.+...|...|++++|++.|+++. ..|+ ..++..++..|...|++++|++.+++++++.++ ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999999998762 1222 257888899999999999999999999876532 15
Q ss_pred chHHHHHHHHHHhhchHHH-HHHHHHH
Q 003457 420 GVYVVLSNMYAEAESMKMQ-LEILLVQ 445 (818)
Q Consensus 420 ~~y~~L~~~l~~~G~~~eA-~~l~~~~ 445 (818)
.+|..++.+|.+.|++++| ...++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 6788999999999999999 6655544
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.59 E-value=1.8e-07 Score=86.87 Aligned_cols=87 Identities=11% Similarity=-0.022 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 357 GCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 357 ~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
..+...+.+.|++++|++.|+++ ...| +...|..+..+|.+.|++++|+..|+++++++|+++..+..++.+|...|+
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence 33444444444444444444444 1122 344444444444455555555555555555555555555555555555555
Q ss_pred hHHHHHHHH
Q 003457 435 MKMQLEILL 443 (818)
Q Consensus 435 ~~eA~~l~~ 443 (818)
+++|++.++
T Consensus 102 ~~~A~~~~~ 110 (142)
T 2xcb_A 102 LDGAESGFY 110 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554433
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.57 E-value=1.7e-07 Score=98.26 Aligned_cols=185 Identities=7% Similarity=-0.118 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 252 ILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACC 328 (818)
Q Consensus 252 ~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 328 (818)
..+..+...+.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++.++... -+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 3444455555556666666666655442 2455666666666677777777777776665432 24556666667777
Q ss_pred HcCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 003457 329 HAGFIDVGRQIFGSMKRVYGIEP---KIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAE 405 (818)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~g~~p---~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~ 405 (818)
..|++++|...|+++.+...-.+ ....+..+ ...+..++.. ........+......+.. ...|++++|+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~~--l~~~~~~~A~ 155 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLTR--LIAAEREREL 155 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHHH--HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHHH--HHHHHHHHHH
Confidence 77777777777776654311000 11111111 1122212222 122222334444343333 2368999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHh-hchHHHHHHHHHH
Q 003457 406 RVVKEIIALEPNNHGVYVVLSNMYAEA-ESMKMQLEILLVQ 445 (818)
Q Consensus 406 ~~~~~~~~~~P~~~~~y~~L~~~l~~~-G~~~eA~~l~~~~ 445 (818)
+.++++++.+|++......+..++.+. +++++|.+++...
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999888888888888776 7789999988776
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.57 E-value=1.9e-07 Score=88.94 Aligned_cols=108 Identities=12% Similarity=-0.003 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 003457 317 DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAA 394 (818)
Q Consensus 317 ~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a 394 (818)
...+..+...+.+.|++++|+..|++.++. .+.+...|..+..+|.+.|++++|++.|+++ ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 455666777777888888888888887765 3446777777777788888888888877776 2334 46777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 003457 395 CKNHGNIEVAERVVKEIIALEPNNHGVYVVLS 426 (818)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~ 426 (818)
|...|++++|++.|+++++++|++...+...+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 77888888888888888888777777554443
No 135
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=3.9e-07 Score=85.38 Aligned_cols=107 Identities=9% Similarity=-0.077 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHH
Q 003457 317 DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAA 394 (818)
Q Consensus 317 ~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a 394 (818)
...+..+...+.+.|++++|...|+++.+. .+.+...|..+..+|.+.|++++|++.|+++ ...| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 445666778888899999999999988875 4557888888999999999999999999887 3344 57888889999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 395 CKNHGNIEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
|...|++++|++.|++++++.|+++......
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 9999999999999999999999887764433
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.54 E-value=1.3e-07 Score=93.06 Aligned_cols=92 Identities=12% Similarity=0.010 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 003457 354 EHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAE 431 (818)
Q Consensus 354 ~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~ 431 (818)
..+..+..+|.+.|++++|++.++++ ...| +...+..+..+|...|++++|++.|++++++.|++..++..++.++.+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 57778888899999999999999887 2334 678899999999999999999999999999999999999999999999
Q ss_pred hhchHHHHH-HHHHH
Q 003457 432 AESMKMQLE-ILLVQ 445 (818)
Q Consensus 432 ~G~~~eA~~-l~~~~ 445 (818)
.++.+++.+ .++.+
T Consensus 169 ~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 169 LKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHC---------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999885 55555
No 137
>1gu3_A Endoglucanase C; carbohydrate-binding module, carbohydrate binding module, CBM, cellulose; HET: BGC; 2.3A {Cellulomonas fimi} SCOP: b.18.1.14 PDB: 1ulo_A 1ulp_A
Probab=98.52 E-value=9.4e-07 Score=82.20 Aligned_cols=126 Identities=23% Similarity=0.318 Sum_probs=72.0
Q ss_pred CcccCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEEeceeeeecCCceeccCCCeeEEecCC-----ccceee-ee
Q 003457 630 NLLLNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSVIGTVKYIDSKHFYVPKGNAAIEIVSV-----SAGIQT-AT 703 (818)
Q Consensus 630 ~l~~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~v~~i~~~~~~~~~g~~~~~l~~~-----~~~~q~-~~ 703 (818)
+||+||+|+.|+. +|.+.|. .+.+.+..|.-.|++.++ --+.|+ +.
T Consensus 2 ~li~NG~F~~g~~-----------------------~W~~~~~-----~~~~~~~~g~l~i~i~~G~~~w~vql~q~gi~ 53 (149)
T 1gu3_A 2 SPIGEGTFDDGPE-----------------------GWVAYGT-----DGPLDTSTGALCVAVPAGSAQYGVGVVLNGVA 53 (149)
T ss_dssp ------CCTTCCT-----------------------TCEEESC-----SSCCBCTTSSEEEEECTTCCTTSSEEEEEEEC
T ss_pred cccccCCccCCCC-----------------------CcEECCc-----eEEEEEeCCEEEEEECCCCcCEEEEEEeCCEE
Confidence 7999999998642 5776332 233445567777777552 111365 77
Q ss_pred ccccCCCeEEEEEecCcccCccccceEEEEeeCCcc---eeeEEEecc-cCCceeeeEEEEecc--cee--------eEE
Q 003457 704 TMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLV---QNFTVQSLG-TGSVIKHSVTFKAGS--GST--------PIS 769 (818)
Q Consensus 704 ~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~f~a~~--~~~--------~~~ 769 (818)
..+|.+|.|+|. |.- ..+..+.|.++... ...--++.. +..|++|++.|++.. +.. +|.
T Consensus 54 --L~~G~tY~lsF~---A~a--s~~r~i~v~i~~~~~~y~~y~~~~~~lt~~~q~yt~tFT~~~~~~~~~~~~~~~grl~ 126 (149)
T 1gu3_A 54 --IEEGTTYTLRYT---ATA--STDVTVRALVGQNGAPYGTVLDTSPALTSEPRQVTETFTASATYPATPAADDPEGQIA 126 (149)
T ss_dssp --BCTTCEEEEEEE---EEE--SSCEECEEEEEESSTTCCEEEEECCEECSSCEEEEEEEECSSCBCSSCBTTBCCEEEE
T ss_pred --EcCCCEEEEEEE---EEe--CCCcEEEEEEecCCCChhhheeeeeEcCCCceEEEEEEECcCCCcCcccccccccEEE
Confidence 899999999999 442 23455555554322 122113333 778999999999863 344 899
Q ss_pred EEeCcccccCCCCccccccceeeee
Q 003457 770 FISYNINQTKDGVFCGPLIDDVVLR 794 (818)
Q Consensus 770 f~~~~~~~~~~~~~~gp~~d~v~~~ 794 (818)
|+=-++...+ .==.||||+++
T Consensus 127 f~lG~~~~~~----~tv~iDnVsL~ 147 (149)
T 1gu3_A 127 FQLGGFSADA----WTLCLDDVALD 147 (149)
T ss_dssp EECTTSCSSC----EEEEEEEEEEE
T ss_pred EEcCCCCCCC----cEEEEEEEEEe
Confidence 9743222111 11159999986
No 138
>1gui_A Laminarinase 16A; carbohydrate binding module, CBM, glucan, cellulose; HET: BGC; 1.9A {Thermotoga maritima} SCOP: b.18.1.14
Probab=98.52 E-value=1.3e-06 Score=82.57 Aligned_cols=101 Identities=22% Similarity=0.159 Sum_probs=62.9
Q ss_pred eccCCCeeEEecCCc---c-c--eeeeeccccCCCeEEEEEecCcccCccccceEEEEeeCCc---ceeeEEEecc-cCC
Q 003457 682 YVPKGNAAIEIVSVS---A-G--IQTATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSL---VQNFTVQSLG-TGS 751 (818)
Q Consensus 682 ~~~~g~~~~~l~~~~---~-~--~q~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~ 751 (818)
.+..|...|++.+.+ . + .|.+. +++|.+|.|+|.. .-+ ....++|.+... ....-.++.. +..
T Consensus 41 ~~~~g~~~i~v~~~g~~~~~~ql~q~i~--l~~G~~Y~lsf~a---ka~--~~~~i~v~l~~~~~~~~~~~~~~~~lt~~ 113 (155)
T 1gui_A 41 GVRDGYAYITIADPGTDTWHIQFNQWIG--LYRGKTYTISFKA---KAD--TPRPINVKILQNHDPWTNYFAQTVNLTAD 113 (155)
T ss_dssp EEETTEEEEEEEECCSSGGGEEEEEEEE--CCTTCEEEEEEEE---EES--SCEEEEEEEECSSTTCCEEEEEEEEECSS
T ss_pred EEeCCEEEEEECCCCCCcEeEEEEccEE--eCCCCEEEEEEEE---EeC--CCCcEEEEEEcCCCChHHheeccEeeCCC
Confidence 344666666664311 1 1 37787 9999999999994 322 234566665432 2232223333 668
Q ss_pred ceeeeEEEEecc---ceeeEEEEeCcccccCCCCccccccceeeeee
Q 003457 752 VIKHSVTFKAGS---GSTPISFISYNINQTKDGVFCGPLIDDVVLRA 795 (818)
Q Consensus 752 ~~~~~~~f~a~~---~~~~~~f~~~~~~~~~~~~~~gp~~d~v~~~~ 795 (818)
|++|++.|++.. ...+|.|.--+.. .+. =.||+|+|.|
T Consensus 114 w~~~~~~ft~~~~t~~~~~l~f~~g~~~---~~~---v~iD~VsL~P 154 (155)
T 1gui_A 114 WQTFTFTYTHPDDADEVVQISFELGEGT---ATT---IYFDDVTVSP 154 (155)
T ss_dssp CEEEEEEEECCTTSCSEEEEEEECCSSC---CCE---EEEEEEEEEE
T ss_pred CEEEEEEEEcCCCCCceEEEEEECCCCC---Cce---EEEEEEEEEe
Confidence 999999999997 5778999752111 111 2399999985
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.9e-07 Score=84.34 Aligned_cols=89 Identities=16% Similarity=0.009 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhh
Q 003457 356 YGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAE 433 (818)
Q Consensus 356 ~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G 433 (818)
+..+...+.+.|++++|++.|+++ ...| +...|..+..++.+.|++++|+..++++++++|+++..|..++.++...|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 86 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 86 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh
Confidence 334444444555555555555444 1122 34445555555555555555555555555555555555555555555555
Q ss_pred chHHHHHHHHH
Q 003457 434 SMKMQLEILLV 444 (818)
Q Consensus 434 ~~~eA~~l~~~ 444 (818)
++++|++.++.
T Consensus 87 ~~~~A~~~~~~ 97 (126)
T 3upv_A 87 EYASALETLDA 97 (126)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555554433
No 140
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.50 E-value=1.4e-05 Score=83.84 Aligned_cols=158 Identities=9% Similarity=-0.006 Sum_probs=121.5
Q ss_pred HHHHHHhCCCHHHHHHHHhhCCCC-----C----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 003457 257 LVHMYTKNGALAKAKALFDSMPER-----N----IATWNAMISGLASHGHAEEALDLFRKLEKEQIV-PN----DITFVG 322 (818)
Q Consensus 257 Li~~~~~~g~~~~A~~~f~~m~~~-----d----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ 322 (818)
.+..+.+.|++++|.+.+++..+. + ...+..+...+...+++++|+..|+++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788899999999999886641 1 113345667777788999999999999874322 22 236888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhC-C---CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHcC-------CCCC-HHHHH
Q 003457 323 VLSACCHAGFIDVGRQIFGSMKRVYG-I---EPK-IEHYGCMVDLLGRCGKVLEAEELIKRMV-------WKPD-VVMWG 389 (818)
Q Consensus 323 ll~a~~~~g~~~~A~~~~~~m~~~~g-~---~p~-~~~~~~Li~~~~~~g~~~~A~~~~~~m~-------~~pd-~~~~~ 389 (818)
+..+|...|++++|...|+++.+... . .+. ..++..+...|.+.|++++|++.++++. ..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999875321 1 111 3478899999999999999999998872 1122 67889
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHhc
Q 003457 390 ALLAACKNHG-NIEVAERVVKEIIAL 414 (818)
Q Consensus 390 ~Li~a~~~~g-~~~~A~~~~~~~~~~ 414 (818)
.+..++.+.| ++++|++.+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999 579999999998864
No 141
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=4.9e-07 Score=83.47 Aligned_cols=93 Identities=13% Similarity=0.026 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSN 427 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~ 427 (818)
...+..+...+.+.|++++|++.|+++ ...|+ ...+..+...|.+.|++++|++.+++++++.|++...+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344444444444555555555555444 22333 3444444445555555555555555555555555555555555
Q ss_pred HHHHhhchHHHHHHHHHH
Q 003457 428 MYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 428 ~l~~~G~~~eA~~l~~~~ 445 (818)
+|.+.|++++|.+.++..
T Consensus 108 ~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 555555555555544333
No 142
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.49 E-value=1.2e-05 Score=91.07 Aligned_cols=104 Identities=9% Similarity=0.022 Sum_probs=69.3
Q ss_pred cCC-CHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC-hHHHHHHH
Q 003457 61 SSG-DLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRS-LNCCKQIH 138 (818)
Q Consensus 61 k~g-~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~-~~~A~~~~ 138 (818)
+.| +++.|+.+|+.+. ..+-. ++++.+..+|++.... .|+...|...+.-..+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 456 3777777777653 22211 8899999999998873 5788888888877766653 45567788
Q ss_pred HHHHHc-CCC-CCHHHHHHHHHHHHh----CCChHHHHHHHHHhhc
Q 003457 139 THVSKS-GLD-LDLHVVNCLVRCYSV----SSDLNNARQVFDEIRN 178 (818)
Q Consensus 139 ~~m~~~-g~~-p~~~~~~~Li~~y~~----~g~~~~A~~l~~~m~~ 178 (818)
+.++.. |.. .+..+|...+..+.. .++++.+.++|++...
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 887765 433 366788877776542 4568889999998865
No 143
>2zez_A Family 16 CBM-2, S-layer associated multidomain endoglucanase; family 16 carbohydrate binding module-2; 1.90A {Thermoanaerobacterium polysaccharolytiorganism_taxid}
Probab=98.48 E-value=1e-06 Score=81.15 Aligned_cols=131 Identities=19% Similarity=0.142 Sum_probs=74.0
Q ss_pred CCcccCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEEeceeee-ecCCceeccCCCeeEEecCC--ccceeeeecc
Q 003457 629 DNLLLNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSVIGTVKY-IDSKHFYVPKGNAAIEIVSV--SAGIQTATTM 705 (818)
Q Consensus 629 ~~l~~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~v~~-i~~~~~~~~~g~~~~~l~~~--~~~~q~~~~~ 705 (818)
.|||.||+||+| +.+|+..|.... +++ .+=.|.+|+++.+. +.+.|++.
T Consensus 2 ~Nli~N~gFE~G-----------------------l~~W~~~g~~~~~v~~---~~~~Gs~alk~s~~~~~~~~Q~V~-- 53 (144)
T 2zez_A 2 SNLIVNGTAENG-----------------------MDGWPDWGYPVSAVPE---AAYGGTKGFKLSGGKQAGMGQKVA-- 53 (144)
T ss_dssp CCSSTTTTSTTT-----------------------TTTSCCCSSSEEEEGG---GCSSTTCEEEECTTSCEEEEEECC--
T ss_pred CccccCCCcccC-----------------------ccCCcccCCCCceecc---cccCCcceeEEecCCcccEEEEEE--
Confidence 499999999985 224554332111 111 11268899999664 46669998
Q ss_pred ccCCCeEEEEEecC-cccCccccceEEEEeeCC--cc-eeeEEE-ecccCCceeeeEEEEeccce--eeE--EEEeCccc
Q 003457 706 LTEGSAYNLDFTLG-DAKDACEGMFVVRVQAGS--LV-QNFTVQ-SLGTGSVIKHSVTFKAGSGS--TPI--SFISYNIN 776 (818)
Q Consensus 706 ~~~g~~y~~tf~~~-~~~~~~~~~~~~~~~~~~--~~-~~~~~~-~~~~~~~~~~~~~f~a~~~~--~~~--~f~~~~~~ 776 (818)
+.||++|+|++.+= +..+. +--.+-+.+.. .+ +....+ +..+.+|...+..|+-.++. +++ -+++...+
T Consensus 54 l~PnttYtLSa~vk~~~~~g--~~~~v~l~~~~~d~~~~~~~~~~~~~~~~W~~~s~~FtT~~~~~~~~~~~~~~~~~~~ 131 (144)
T 2zez_A 54 LKPNTTYILGAWGKFTAKPG--TYCDVIVQYHLKDANNTYVQNILRFTETDWTYKQVVFTTPDAFGSDPEFVLWKDDASN 131 (144)
T ss_dssp CCTTCEEEEEEEEEESSCCS--SCEEEEEEEEBSSTTCCEEEEEEEECCSSCEEEEEEEECCSSBSSCCEEEEEECCCSS
T ss_pred ECCCCEEEEEEEEEEcccCC--ceEEEEEeecccccCCceeEEEeecCCCCCEEEEEEEEcCCCceEEEEEEEEeCCCCc
Confidence 99999999999851 11111 11112222221 11 211111 23477899999999988765 333 33331111
Q ss_pred ccCCCCccccccceeeeeec
Q 003457 777 QTKDGVFCGPLIDDVVLRAS 796 (818)
Q Consensus 777 ~~~~~~~~gp~~d~v~~~~~ 796 (818)
.+ -.+|||.|..+
T Consensus 132 --g~-----~y~DDv~Lvev 144 (144)
T 2zez_A 132 --AD-----FYADNITLVEV 144 (144)
T ss_dssp --CC-----EEEEEEEEEC-
T ss_pred --cc-----EEEEeEEEEeC
Confidence 11 25999998753
No 144
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=6e-07 Score=78.92 Aligned_cols=109 Identities=20% Similarity=0.062 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAAC 395 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~ 395 (818)
..+..+...+...|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34445555555566666666666655543 2334555555555555555555555555554 1122 344555555555
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALEPNNHGVYVVLSNM 428 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~ 428 (818)
...|++++|.+.++++++..|+++..+..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 555555555555555555555555554444433
No 145
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.47 E-value=4e-07 Score=94.09 Aligned_cols=121 Identities=12% Similarity=-0.046 Sum_probs=77.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHc
Q 003457 323 VLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDV----VMWGALLAACKNH 398 (818)
Q Consensus 323 ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~----~~~~~Li~a~~~~ 398 (818)
+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|++....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 445566677777777777665532 333325555556677777777777777766433322 3566667777777
Q ss_pred CCHHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 399 GNIEVAERVVKEIIALE--PN-NHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 399 g~~~~A~~~~~~~~~~~--P~-~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
|++++|++.|+++..-. |. .++....++.++.+.|+.++|.++++.+.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777777776432 43 44566777777777777777777666553
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.47 E-value=2.2e-06 Score=82.35 Aligned_cols=115 Identities=9% Similarity=0.069 Sum_probs=70.1
Q ss_pred HcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHH-HHHcCCH--HH
Q 003457 329 HAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP-DVVMWGALLAA-CKNHGNI--EV 403 (818)
Q Consensus 329 ~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a-~~~~g~~--~~ 403 (818)
..|++++|...+++..+. .+.+...+..+...|...|++++|++.|+++. ..| +...+..+... +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 445666666666666654 34455666666666777777777777666652 222 45566666666 5566666 77
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 404 AERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 404 A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
|+..++++++.+|++...+..++.+|.+.|++++|.+.++..
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 777777777777766666667777777777777776655443
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.46 E-value=2.9e-06 Score=80.52 Aligned_cols=94 Identities=13% Similarity=0.043 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003457 352 KIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMY 429 (818)
Q Consensus 352 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l 429 (818)
+...+..+...|.+.|++++|++.|+++ ...| +...|..+..+|.+.|++++|+..|+++++++|++...|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567788888899999999999999887 2334 6788888999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHHH
Q 003457 430 AEAESMKMQLEILLVQ 445 (818)
Q Consensus 430 ~~~G~~~eA~~l~~~~ 445 (818)
.+.|++++|++.++..
T Consensus 90 ~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 9999999999976554
No 148
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.45 E-value=3.8e-07 Score=85.54 Aligned_cols=61 Identities=7% Similarity=-0.021 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHHhhchHHHHHHHHHHH
Q 003457 386 VMWGALLAACKNHGNIEVAERVVKEIIAL-------EPNNHGVY----VVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 386 ~~~~~Li~a~~~~g~~~~A~~~~~~~~~~-------~P~~~~~y----~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
..|..+..++.+.|++++|+..+++++++ +|++..+| +.++.+|...|+++||++.++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 48899999999999999999999999999 99999999 999999999999999999777764
No 149
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.45 E-value=6.2e-05 Score=80.25 Aligned_cols=229 Identities=9% Similarity=0.004 Sum_probs=145.4
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhC-C-CHHH
Q 003457 193 QSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSG-CLELGEKVHVFVKMRGFEMGAILGTALVHMYTKN-G-ALAK 269 (818)
Q Consensus 193 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g-~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~-g-~~~~ 269 (818)
+....++|++++++++... +-+...|+.--.++...+ .++++.+.++.++... +.+..+++.-..++.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3344566777777777664 334455565555555666 4777777777777664 44555666555555554 5 6677
Q ss_pred HHHHHhhCCC---CChhhHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------
Q 003457 270 AKALFDSMPE---RNIATWNAMISGLASHGHAE--------EALDLFRKLEKEQIVPNDITFVGVLSACCHAGF------ 332 (818)
Q Consensus 270 A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~--------~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~------ 332 (818)
++++++++.+ +|..+|+.-.-.+.+.++++ ++++.++++++..+. |...++.....+.+.++
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence 7777777775 34556666555555555454 788888888887554 67777777767766665
Q ss_pred -HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHcC-C-------CC
Q 003457 333 -IDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKV--------------------LEAEELIKRMV-W-------KP 383 (818)
Q Consensus 333 -~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~--------------------~~A~~~~~~m~-~-------~p 383 (818)
++++++.+++++.. .+-|...|+.+-..+.+.|+. .+..+...++. . .+
T Consensus 223 ~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 67788888887765 556777787777777766653 23333333331 1 24
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCcchHHHHH
Q 003457 384 DVVMWGALLAACKNHGNIEVAERVVKEII-ALEPNNHGVYVVLS 426 (818)
Q Consensus 384 d~~~~~~Li~a~~~~g~~~~A~~~~~~~~-~~~P~~~~~y~~L~ 426 (818)
....+..|++.|...|+.++|.++++.+. +.+|-....|...+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 56777888888888888888888888876 56776555554443
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.45 E-value=2.8e-06 Score=78.65 Aligned_cols=112 Identities=12% Similarity=-0.057 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAAC 395 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~ 395 (818)
..+..+...+.+.|++++|...|+++.+. .+.+...|..+..+|.+.|++++|++.|+++ ...| +...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555667788888888888888888775 4556778888888888899999999888887 2334 567788889999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAE 431 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~ 431 (818)
...|++++|++.|++++++.|+++........+...
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 132 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM 132 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence 999999999999999999999888776555444433
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=2.3e-06 Score=88.44 Aligned_cols=136 Identities=12% Similarity=-0.046 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHH
Q 003457 286 NAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK--IEHYGCMVDLL 363 (818)
Q Consensus 286 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~--~~~~~~Li~~~ 363 (818)
..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+. ..|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~--~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW--PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc--CCcccHHHHHHHHHHHH
Confidence 344556666777777777777665542 43334445555677777888887777754321 0111 23567777888
Q ss_pred HHcCCHHHHHHHHHHcCCC---CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 003457 364 GRCGKVLEAEELIKRMVWK---PD--VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLS 426 (818)
Q Consensus 364 ~~~g~~~~A~~~~~~m~~~---pd--~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~ 426 (818)
.+.|++++|++.|++.... |. .........++.+.|+.++|...|++++..+|+ ..++..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8888888888888887312 32 346667777888999999999999999999998 66666553
No 152
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.44 E-value=4.1e-07 Score=82.15 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=87.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 003457 350 EPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSN 427 (818)
Q Consensus 350 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~ 427 (818)
+.+...+..+...+.+.|++++|++.|+++ ...| +...+..+...+...|++++|++.++++++..|++...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345778889999999999999999999998 3444 68889999999999999999999999999999999999999999
Q ss_pred HHHHhhchHHHHHHHHHHH
Q 003457 428 MYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 428 ~l~~~G~~~eA~~l~~~~~ 446 (818)
++.+.|++++|++.++...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 9999999999999777663
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.44 E-value=3.9e-06 Score=73.53 Aligned_cols=93 Identities=13% Similarity=0.015 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLL 363 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~ 363 (818)
.+..+...+...|++++|+..|++..+... .+...+..+..++...|++++|...+++..+. .+.+...+..+..+|
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 444455555555555555555555554421 13444445555555555555555555555543 223344555555555
Q ss_pred HHcCCHHHHHHHHHHc
Q 003457 364 GRCGKVLEAEELIKRM 379 (818)
Q Consensus 364 ~~~g~~~~A~~~~~~m 379 (818)
.+.|++++|.+.|++.
T Consensus 83 ~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 5555555555555554
No 154
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.44 E-value=2.6e-06 Score=80.06 Aligned_cols=99 Identities=8% Similarity=-0.089 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAAC 395 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~ 395 (818)
..+..+...+.+.|++++|...|+++.+. .+.+...|..+..+|.+.|++++|++.|+++ ...| +...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 45566677777888888888888887765 4456777888888888888888888888877 3344 467788888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCC
Q 003457 396 KNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
.+.|++++|++.|++++++.|++
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 89999999999999999988884
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=2.9e-06 Score=76.43 Aligned_cols=111 Identities=8% Similarity=-0.100 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHH
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAAC 395 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~ 395 (818)
..+..+...+.+.|++++|...|++.++. .+.+...|..+..+|.+.|++++|++.|+++ ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45666777788888888888888888775 4556788888888888899999998888887 3344 578888899999
Q ss_pred HHcCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALE------PNNHGVYVVLSNMYA 430 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~------P~~~~~y~~L~~~l~ 430 (818)
...|++++|++.|+++++++ |++...+..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999998 887777777665544
No 156
>1cx1_A Endoglucanase C; cellulose-binding domain, cellooligosacharides, cellulase, protein- carbohydrate interaction, hydrolase; NMR {Cellulomonas fimi} SCOP: b.18.1.14
Probab=98.43 E-value=2.2e-06 Score=80.66 Aligned_cols=81 Identities=26% Similarity=0.290 Sum_probs=49.2
Q ss_pred eeeccccCCCeEEEEEecCcccCccccceEEEEeeCCc---c-eeeEEEecc-cCCceeeeEEEEecc--cee-----eE
Q 003457 701 TATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSL---V-QNFTVQSLG-TGSVIKHSVTFKAGS--GST-----PI 768 (818)
Q Consensus 701 ~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~-~~~~~~~~~~f~a~~--~~~-----~~ 768 (818)
-+. +++|.+|.|+|. |.-+ ....++|.+... . ..+.-++.. +..|++|++.|++.. +.. +|
T Consensus 57 gi~--l~~G~~Y~lsf~---a~as--~~~~i~v~i~~~~~~~~~~~~~~~~~~t~~w~~~~~~ft~~~~~~~~~~~~~rl 129 (153)
T 1cx1_A 57 GVP--VGEGESYVLSFT---ASAT--PDMPVRVLVGEGGGAYRTAFEQGSAPLTGEPATREYAFTSNLTFPPDGDAPGQV 129 (153)
T ss_dssp CCC--BCTTSEEEEEEE---EEES--SCEEEEEEEECSSSSCCCSSCEEEEEECSCCEEEEEEEECCSCBCSSSSCCCEE
T ss_pred CEE--ecCCCEEEEEEE---EEeC--CCceEEEEEeCCCCCchhhcccccEEecCCCEEEEEEEEcCCCCCcccccccEE
Confidence 455 899999999999 4322 223455555322 1 111111233 667999999999984 333 79
Q ss_pred EEEeCcccccCCCCccccccceeeee
Q 003457 769 SFISYNINQTKDGVFCGPLIDDVVLR 794 (818)
Q Consensus 769 ~f~~~~~~~~~~~~~~gp~~d~v~~~ 794 (818)
.|.--. ...+.+ .||+|+|.
T Consensus 130 ~f~lg~---~~~~~v---~iD~VsL~ 149 (153)
T 1cx1_A 130 AFHLGK---AGAYEF---CISQVSLT 149 (153)
T ss_dssp EEECCC---TTCCEE---EEEEEEEE
T ss_pred EEECCC---CcCCEE---EEEeEEEE
Confidence 886521 112222 39999997
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.43 E-value=7.7e-07 Score=79.04 Aligned_cols=94 Identities=19% Similarity=0.246 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRMV-WK-PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~-pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
...+..+...+.+.|++++|++.|+++. .. .+...+..+...+.+.|++++|+..++++++..|++...+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999999883 23 367889999999999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHHH
Q 003457 431 EAESMKMQLEILLVQV 446 (818)
Q Consensus 431 ~~G~~~eA~~l~~~~~ 446 (818)
+.|++++|.+.++...
T Consensus 89 ~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 89 KQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 9999999999877664
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.42 E-value=4.8e-06 Score=81.39 Aligned_cols=150 Identities=14% Similarity=0.043 Sum_probs=67.7
Q ss_pred CCCHHHHHH---HHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHH
Q 003457 264 NGALAKAKA---LFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKE----QIVP-NDITFVGVLSACCHAGFIDV 335 (818)
Q Consensus 264 ~g~~~~A~~---~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~ 335 (818)
.|++++|.+ .+..-.......+..+...+...|++++|+..+++..+. +..+ ....+..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555 333322223445555555556666666666666555431 1111 12334445555555556655
Q ss_pred HHHHHHHHHHHhCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCCC----HHHHHHHHHHHHHcCCHH
Q 003457 336 GRQIFGSMKRVYGIEP-K----IEHYGCMVDLLGRCGKVLEAEELIKRMV----WKPD----VVMWGALLAACKNHGNIE 402 (818)
Q Consensus 336 A~~~~~~m~~~~g~~p-~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~pd----~~~~~~Li~a~~~~g~~~ 402 (818)
|...+++..+.....+ + ...+..+...+...|++++|.+.+++.. ...+ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 5555555443211111 1 2234444555555555555555554431 0111 122344444555555555
Q ss_pred HHHHHHHHHHh
Q 003457 403 VAERVVKEIIA 413 (818)
Q Consensus 403 ~A~~~~~~~~~ 413 (818)
+|.+.++++++
T Consensus 165 ~A~~~~~~al~ 175 (203)
T 3gw4_A 165 EAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.41 E-value=1.7e-06 Score=97.93 Aligned_cols=144 Identities=9% Similarity=-0.011 Sum_probs=109.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCH
Q 003457 324 LSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNI 401 (818)
Q Consensus 324 l~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~ 401 (818)
...+.+.|++++|.+.|+++++. .+.+...+..+..+|.+.|++++|++.++++ ...| +...+..+..+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34566778888999888888875 4456888889999999999999999999888 3445 578899999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHH--HHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCccee
Q 003457 402 EVAERVVKEIIALEPNNHGVYVVLSNM--YAEAESMKMQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFV 479 (818)
Q Consensus 402 ~~A~~~~~~~~~~~P~~~~~y~~L~~~--l~~~G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v 479 (818)
++|++.|++++++.|++...+..++.+ +.+.|++++|++.++... .-........++++|+...++.
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~al~~~~~~~~~~~ 159 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR-----------SVVDSLDIESMTIEDEYSGPKL 159 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CC-----------STTTCCTTSSCCCCTTCCSCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccc-----------hhHhhhhhhhcccccccccccc
Confidence 999999999999999999999999988 889999999999776430 0111222334577777766654
Q ss_pred e
Q 003457 480 L 480 (818)
Q Consensus 480 ~ 480 (818)
.
T Consensus 160 ~ 160 (477)
T 1wao_1 160 E 160 (477)
T ss_dssp G
T ss_pred c
Confidence 3
No 160
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.41 E-value=3e-06 Score=95.29 Aligned_cols=127 Identities=10% Similarity=-0.010 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-
Q 003457 319 TFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEP-------------KIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP- 383 (818)
Q Consensus 319 t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p-------------~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p- 383 (818)
.+..+...+.+.|++++|...|+++++.....+ ....|..+..+|.+.|++++|++.|+++ ...|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 344445555555555555555555554311111 1578889999999999999999999988 2334
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH-HHHHH
Q 003457 384 DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE-ILLVQ 445 (818)
Q Consensus 384 d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~-l~~~~ 445 (818)
+...|..+..+|...|++++|+..|+++++++|++..++..++.++.+.|++++|.+ +++.+
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999987 55555
No 161
>2xom_A Arabinogalactan endo-1,4-beta-galactosidase; hydrolase, carbohydrate-binding module, glycoside hydrolase, beta-sandwich.; HET: GAL; 0.95A {Thermotoga maritima} PDB: 2xon_A*
Probab=98.41 E-value=3.8e-06 Score=78.50 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=81.5
Q ss_pred CCCcccCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEEec---eeeeecC-CceeccCCCeeEEecCC----ccce
Q 003457 628 NDNLLLNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSVIG---TVKYIDS-KHFYVPKGNAAIEIVSV----SAGI 699 (818)
Q Consensus 628 ~~~l~~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~---~v~~i~~-~~~~~~~g~~~~~l~~~----~~~~ 699 (818)
..|||.||+||+| .+.||++.| .+.-+.. ..-.+-.|.+++..-.. .++.
T Consensus 7 ~~Nll~N~gFE~g----------------------~ls~Wt~~~~~~~~~~~~~~~~~~~~~Gs~~l~~~~~~~~~~~~~ 64 (152)
T 2xom_A 7 SRNYLKNPGFETG----------------------EFSPWRVSGDKKAVKVVKANPSSNAHQGEYAVNFWLDESFSFELS 64 (152)
T ss_dssp CCCCSSSTTCTTS----------------------SCTTCEEEECGGGEEEEECSSGGGCSSSSEEEEEECSSCEEEEEE
T ss_pred CCceecCCCcCCC----------------------CCCCceEeCCCCceeeEEeccCCCCCCCcEEEEEEeCCCCeeEEE
Confidence 4599999999995 245799864 2322210 00122378888876432 4566
Q ss_pred eeeeccccCCCeEEEEEecCcccCccccceEEEEee---CCcceeeEEEecccCCceeeeEE-EEeccceeeEEEEeCcc
Q 003457 700 QTATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQA---GSLVQNFTVQSLGTGSVIKHSVT-FKAGSGSTPISFISYNI 775 (818)
Q Consensus 700 q~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-f~a~~~~~~~~f~~~~~ 775 (818)
|+++ .|..+|+|++.+-. ..+ +. +-+.| ++.....++.+.+-..|.+++.. |+.+....+|.|+.-+.
T Consensus 65 Qtvt---lp~gtYtlsa~v~~--~~~-~~--~yl~~~~~gg~~~~~~~~~~g~~~w~~~~i~~i~v~~G~~~Ig~~~~~~ 136 (152)
T 2xom_A 65 QEVE---LPAGVYRVGFWTHG--EKG-VK--IALKVSDYGGNERSVEVETTGWLEWKNPEIRNIKVETGRIKITVSVEGR 136 (152)
T ss_dssp EEEE---CCSEEEEEEEEEEE--STT-CE--EEEEEESSSSCCEEEEEECCEEEEEECCEEEEEEECSSEEEEEEEEEEC
T ss_pred EEEE---eCCCeEEEEEEEEc--CCC-ce--EEEEEecCCCcEEEEEccCCCCCcccEEEEeEEEEeCCeEEEEEEEEcC
Confidence 9885 55558999999743 222 22 44444 34444444433333457777665 88888899999987432
Q ss_pred cccCCCCccccccceeeeeec
Q 003457 776 NQTKDGVFCGPLIDDVVLRAS 796 (818)
Q Consensus 776 ~~~~~~~~~gp~~d~v~~~~~ 796 (818)
. . -+--||||.|...
T Consensus 137 ~---g---~W~~iDd~~L~~~ 151 (152)
T 2xom_A 137 A---G---DWGFIDDFYLFRE 151 (152)
T ss_dssp T---T---CEEEEEEEEEEEC
T ss_pred C---C---CeEEEEEEEEEEc
Confidence 2 1 1357999998764
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.40 E-value=1.4e-06 Score=79.56 Aligned_cols=100 Identities=8% Similarity=-0.140 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHH
Q 003457 316 NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLA 393 (818)
Q Consensus 316 d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~ 393 (818)
+...+..+...+...|++++|...|++..+. .+.+...+..+..+|...|++++|++.|+++ ...| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3445555555555666666666666555544 2334555555555555555555555555554 1222 3455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
++...|++++|+..|++++++.|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555555554
No 163
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.38 E-value=1.1e-05 Score=75.71 Aligned_cols=129 Identities=12% Similarity=-0.056 Sum_probs=101.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003457 282 IATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVD 361 (818)
Q Consensus 282 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~ 361 (818)
...|..+...+...|++++|+..|++..+... .+...+..+..++...|++++|...+++..+. .+.+...+..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 34677788888889999999999999887643 35777888888899999999999999998876 4556788888999
Q ss_pred HHHHcCCHHHHHHHHHHcC-CCC-CHHHHHH--HHHHHHHcCCHHHHHHHHHHHHh
Q 003457 362 LLGRCGKVLEAEELIKRMV-WKP-DVVMWGA--LLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 362 ~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~--Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
+|.+.|++++|.+.|+++. ..| +...+.. ++..+...|++++|++.+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999998872 233 4455533 34447778999999998887654
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.38 E-value=1e-06 Score=76.70 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CcchHHHHHH
Q 003457 352 KIEHYGCMVDLLGRCGKVLEAEELIKRMV-WK-PDVVMWGALLAACKNHGNIEVAERVVKEIIALEPN--NHGVYVVLSN 427 (818)
Q Consensus 352 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~-pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~--~~~~y~~L~~ 427 (818)
+...+..+...+.+.|++++|+..|+++. .. .+...+..+...+...|++++|++.++++++..|+ +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34556667777778888888888887762 22 35677788888888888888888888888888888 8888888888
Q ss_pred HHHHh-hchHHHHHHHHHH
Q 003457 428 MYAEA-ESMKMQLEILLVQ 445 (818)
Q Consensus 428 ~l~~~-G~~~eA~~l~~~~ 445 (818)
++.+. |++++|++.++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 88888 8888888877666
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.38 E-value=6.3e-06 Score=75.04 Aligned_cols=95 Identities=17% Similarity=0.051 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 003457 351 PKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNM 428 (818)
Q Consensus 351 p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~ 428 (818)
.+...+..+...+.+.|++++|+..|+++ ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45667777777777788888888777776 2233 466777777777777888888888888777777777777778888
Q ss_pred HHHhhchHHHHHHHHHH
Q 003457 429 YAEAESMKMQLEILLVQ 445 (818)
Q Consensus 429 l~~~G~~~eA~~l~~~~ 445 (818)
|...|++++|++.++..
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 87888888777765544
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.37 E-value=1.1e-06 Score=78.79 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003457 352 KIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMY 429 (818)
Q Consensus 352 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l 429 (818)
+...+..+...+...|++++|++.|+++. ..| +...+..+...+...|++++|++.++++++..|++...+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677888899999999999999999882 334 6888999999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHHHH
Q 003457 430 AEAESMKMQLEILLVQV 446 (818)
Q Consensus 430 ~~~G~~~eA~~l~~~~~ 446 (818)
.+.|++++|.+.++...
T Consensus 91 ~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHH
Confidence 99999999999776664
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.36 E-value=2.8e-05 Score=82.55 Aligned_cols=145 Identities=12% Similarity=-0.012 Sum_probs=71.5
Q ss_pred HHHHHHHHHH---HHHcCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHcC
Q 003457 181 LNVWTTMISG---YAQSFRAN-EALMLFDQMLMEGFEPNSVTLASVLSACAQSGC----------LELGEKVHVFVKMRG 246 (818)
Q Consensus 181 ~~~~~~Li~~---~~~~g~~~-~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~----------~~~A~~i~~~~~~~g 246 (818)
+..|..+... ..+.|.++ +|++++.+++... +-+...|+.--.++...+. ++++..+++.++...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 3445444432 33455554 7888888888763 3334444443333333222 345555555555543
Q ss_pred CCCcHHHHHHHHHHHHhCC--CHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHH
Q 003457 247 FEMGAILGTALVHMYTKNG--ALAKAKALFDSMPE---RNIATWNAMISGLASHGH-AEEALDLFRKLEKEQIVPNDITF 320 (818)
Q Consensus 247 ~~~~~~~~~~Li~~~~~~g--~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~t~ 320 (818)
+.+..+++.-..++.+.+ ++++++.+++++.+ +|..+|+.-.-.+...|. ++++++.+.++++..+. |...+
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW 182 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSW 182 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHH
Confidence 344455554444444444 25555555555543 344455555444455554 35555555555554333 44444
Q ss_pred HHHHHHHH
Q 003457 321 VGVLSACC 328 (818)
Q Consensus 321 ~~ll~a~~ 328 (818)
+.....+.
T Consensus 183 ~~R~~ll~ 190 (331)
T 3dss_A 183 HYRSCLLP 190 (331)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44433333
No 168
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.33 E-value=3.1e-05 Score=81.11 Aligned_cols=162 Identities=10% Similarity=0.007 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCChHHHHHHHHHHHHcCCC---CC--HH
Q 003457 82 MWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQ-----HTFTFVLKACSNVRSLNCCKQIHTHVSKSGLD---LD--LH 151 (818)
Q Consensus 82 ~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~-----~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~ 151 (818)
.+...+..+...|++++|++.+++..+....... ..+..+...+...|++++|...+++.++.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444555666666777776666665553221110 12223334445556666666666665543211 11 23
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhc-----CC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCC-CH
Q 003457 152 VVNCLVRCYSVSSDLNNARQVFDEIRN-----RT-----LNVWTTMISGYAQSFRANEALMLFDQMLMEG----FEP-NS 216 (818)
Q Consensus 152 ~~~~Li~~y~~~g~~~~A~~l~~~m~~-----~d-----~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g----~~p-d~ 216 (818)
+++.+...|...|++++|...|++..+ ++ ..+++.+...|.+.|++++|+..+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 555555566666666666666655431 11 1345555555556666666665555554321 000 03
Q ss_pred HHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 003457 217 VTLASVLSACAQSGCLELG-EKVHVFVK 243 (818)
Q Consensus 217 ~t~~~ll~~~~~~g~~~~A-~~i~~~~~ 243 (818)
.+|..+..++.+.|+.++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444455555555555555 44444433
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=2.4e-06 Score=77.57 Aligned_cols=92 Identities=4% Similarity=0.058 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc-------hHHH
Q 003457 354 EHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG-------VYVV 424 (818)
Q Consensus 354 ~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~-------~y~~ 424 (818)
..+..+...|.+.|++++|++.|+++ ...| +...|..+..+|.+.|++++|++.+++++++.|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667888888999999999999887 3344 5788889999999999999999999999998887643 6777
Q ss_pred HHHHHHHhhchHHHHHHHHHH
Q 003457 425 LSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 425 L~~~l~~~G~~~eA~~l~~~~ 445 (818)
++.++...|++++|++.++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 888888999999999977665
No 170
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.31 E-value=0.00011 Score=77.92 Aligned_cols=237 Identities=10% Similarity=-0.018 Sum_probs=144.8
Q ss_pred HhCCChH-HHHHHHHHhhcCC---HHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003457 161 SVSSDLN-NARQVFDEIRNRT---LNVWTTMISGYAQSFR----------ANEALMLFDQMLMEGFEPNSVTLASVLSAC 226 (818)
Q Consensus 161 ~~~g~~~-~A~~l~~~m~~~d---~~~~~~Li~~~~~~g~----------~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~ 226 (818)
.+.|+++ +|+++++.+...+ ..+|+.--..+...+. +++++.+++.++... +-+..+|..-..++
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3556654 7899999888654 4467765555544433 678888999888775 55777888777777
Q ss_pred HhcCC--hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC-HHHHHHHHhhCCC---CChhhHHHHHHHHHHc-----
Q 003457 227 AQSGC--LELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGA-LAKAKALFDSMPE---RNIATWNAMISGLASH----- 295 (818)
Q Consensus 227 ~~~g~--~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~-~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~----- 295 (818)
.+.++ ++++..+++.+.+.. +.+...++.-..++.+.|. ++++++.++++.+ .|..+|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 77774 789999999999886 6677777777777777787 6888888888775 5777888877666554
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003457 296 ---------GHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRC 366 (818)
Q Consensus 296 ---------g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~ 366 (818)
+.++++++.+.+.+...+. |...++-+-..+.+.-. . -..+ -.+.
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~-------------~--~~~~----------~~~~ 251 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSG-------------R--CELS----------VEKS 251 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSC-------------G--GGCC----------HHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccC-------------c--cccc----------hHHH
Confidence 2355555555555554322 33444322222222100 0 0000 0011
Q ss_pred CCHHHHHHHHHHc-CCCCC-HHHHHHHHHH---HHHcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 003457 367 GKVLEAEELIKRM-VWKPD-VVMWGALLAA---CKNHGNIEVAERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 367 g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a---~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L 425 (818)
+.++++++.++++ ...|| ...+..++.. ....+..++....+.++.+++|....-|..+
T Consensus 252 ~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 252 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 3345666666555 23343 2222222211 1135677888889999999999844444443
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.30 E-value=0.0006 Score=72.67 Aligned_cols=180 Identities=10% Similarity=-0.022 Sum_probs=123.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 003457 83 WNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVR-SLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYS 161 (818)
Q Consensus 83 yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~ 161 (818)
++.+-....+.+..++|+++++++...+.. +...++.--..+...+ ++++++++++.+++..++ +..+|+.-..++.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 333333344455567899999998886444 5556777777777777 588999999998887655 6677777666666
Q ss_pred hC-C-ChHHHHHHHHHhhcC---CHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003457 162 VS-S-DLNNARQVFDEIRNR---TLNVWTTMISGYAQSFRAN--------EALMLFDQMLMEGFEPNSVTLASVLSACAQ 228 (818)
Q Consensus 162 ~~-g-~~~~A~~l~~~m~~~---d~~~~~~Li~~~~~~g~~~--------~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 228 (818)
+. + +.++++++++++.+. |..+|+...-.+.+.+.++ ++++.++++++.. +-|...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 65 6 788888888888765 4557776665655555565 8888888888875 4577777777777666
Q ss_pred cCC-------hhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC
Q 003457 229 SGC-------LELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGA 266 (818)
Q Consensus 229 ~g~-------~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~ 266 (818)
.++ ++++.+.+.+++... +.|...++.+-..+.+.|+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 665 466667777766664 4555666655555555443
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1e-05 Score=74.42 Aligned_cols=112 Identities=13% Similarity=-0.005 Sum_probs=82.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHH
Q 003457 316 NDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWG 389 (818)
Q Consensus 316 d~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~ 389 (818)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|.+.|++++|++.++++ ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345555666666666777777777666653 3444 566777777788888888888888776 2234 577888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 390 ALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 390 ~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
.+..++...|++++|++.|++++++.|++...+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 88888999999999999999999999998887777766543
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.28 E-value=5.9e-06 Score=74.95 Aligned_cols=102 Identities=10% Similarity=0.038 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CC----CC----HHHH
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WK----PD----VVMW 388 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~----pd----~~~~ 388 (818)
..+..++..+.+.|++++|+..|++.++. .+.+...|..+..+|.+.|++++|++.|+++. .. ++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 34556666777777777777777776664 34456667777777777777777777776652 11 11 2467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 003457 389 GALLAACKNHGNIEVAERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 389 ~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y 422 (818)
..+..++...|++++|++.|+++++..|+ ++..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 77788888899999999999999988886 4443
No 174
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.27 E-value=3.3e-06 Score=88.26 Aligned_cols=191 Identities=11% Similarity=-0.005 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHH
Q 003457 215 NSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE---RNIATWNAMISG 291 (818)
Q Consensus 215 d~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~ 291 (818)
+...+..+...+.+.|++++|...++++++.. +.+...+..+..+|.+.|++++|.+.+++..+ .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34556666667777777777777777777764 44667777788888888888888888887765 356678888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH
Q 003457 292 LASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLE 371 (818)
Q Consensus 292 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~ 371 (818)
|...|++++|+..|++..+..+. +...+...+....+ ..++.. +...... ..+.+......+... ..|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEER-RIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHT-CCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHH-HHhhhHHHHHHHHHH--HHHHHHH
Confidence 99999999999999887764211 00011111111111 111111 1222222 355555555555433 3789999
Q ss_pred HHHHHHHc-CCCCCHH-HHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Q 003457 372 AEELIKRM-VWKPDVV-MWGALLAACKNH-GNIEVAERVVKEIIAL 414 (818)
Q Consensus 372 A~~~~~~m-~~~pd~~-~~~~Li~a~~~~-g~~~~A~~~~~~~~~~ 414 (818)
|++.++++ ...|+.. ....+...+.+. +.+++|.++|+++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999887 4556643 333443334444 6788999999888764
No 175
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.27 E-value=7.1e-06 Score=89.41 Aligned_cols=89 Identities=8% Similarity=-0.024 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003457 352 KIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMY 429 (818)
Q Consensus 352 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l 429 (818)
+...|..+..+|.+.|++++|++.++++ ...| +...|..+..+|...|++++|++.|++++++.|++...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578889999999999999999999998 4455 5889999999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHH
Q 003457 430 AEAESMKMQLE 440 (818)
Q Consensus 430 ~~~G~~~eA~~ 440 (818)
.+.++.+++.+
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 176
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.27 E-value=7.7e-06 Score=79.86 Aligned_cols=149 Identities=12% Similarity=-0.046 Sum_probs=84.5
Q ss_pred hcCCCHHHHHH---HHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCh
Q 003457 60 SSSGDLSYATR---LFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRT----GFAP-NQHTFTFVLKACSNVRSL 131 (818)
Q Consensus 60 ~k~g~~e~A~~---lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~----g~~p-d~~ty~~ll~~~~~~g~~ 131 (818)
...|++++|++ ++...+......+..+...+...|++++|+..|++..+. +..+ ....+..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888888 554433345667777778888888888888888776652 1111 223566666667777777
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHhhc-----CCH----HHHHHHHHHHHHcCC
Q 003457 132 NCCKQIHTHVSKS----GLDL--DLHVVNCLVRCYSVSSDLNNARQVFDEIRN-----RTL----NVWTTMISGYAQSFR 196 (818)
Q Consensus 132 ~~A~~~~~~m~~~----g~~p--~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~-----~d~----~~~~~Li~~~~~~g~ 196 (818)
++|.+.+++.++. +..+ ....+..+...+...|++++|.+.+++..+ .+. .++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777666543 1011 123455555666666666666666655432 111 123445555555555
Q ss_pred hHHHHHHHHHHH
Q 003457 197 ANEALMLFDQML 208 (818)
Q Consensus 197 ~~~A~~l~~~m~ 208 (818)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=1.7e-06 Score=81.96 Aligned_cols=121 Identities=12% Similarity=-0.031 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-
Q 003457 317 DITFVGVLSACCHAGFIDVGRQIFGSMKRVYG----------------IEPKIEHYGCMVDLLGRCGKVLEAEELIKRM- 379 (818)
Q Consensus 317 ~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g----------------~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m- 379 (818)
...+......+.+.|++++|...|++.++... .+.+...|..+..+|.+.|++++|+..++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34566677788888888888888888765310 0112345666666666666666666666665
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHHhhchHH
Q 003457 380 VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNH-GVYVVLSNMYAEAESMKM 437 (818)
Q Consensus 380 ~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~-~~y~~L~~~l~~~G~~~e 437 (818)
...| +...|..+..+|...|++++|+..|+++++++|++. .....+..+..+.++.++
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~ 150 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKA 150 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2233 456666666666666666666666666666666665 444455555444444443
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=8e-06 Score=73.04 Aligned_cols=113 Identities=8% Similarity=-0.004 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-C----CCC----HHHHH
Q 003457 319 TFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-W----KPD----VVMWG 389 (818)
Q Consensus 319 t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~----~pd----~~~~~ 389 (818)
.+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|+..|+++. . .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455556666666777777776666654 34456666667777777777777777776652 1 122 66778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhc
Q 003457 390 ALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAES 434 (818)
Q Consensus 390 ~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~ 434 (818)
.+...+.+.|++++|.+.|+++++..|+ +.....+..++...++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence 8888888999999999999999998884 7777777766665544
No 179
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.26 E-value=1.6e-05 Score=85.51 Aligned_cols=131 Identities=5% Similarity=-0.066 Sum_probs=107.1
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003457 281 NIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPN--------------DITFVGVLSACCHAGFIDVGRQIFGSMKRV 346 (818)
Q Consensus 281 d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~ 346 (818)
+...|..+...|.+.|++++|+..|++.++...... ...+..+..+|.+.|++++|+..++++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345777788888888999999999988887643322 478888899999999999999999999886
Q ss_pred hCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHh
Q 003457 347 YGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVA-ERVVKEIIA 413 (818)
Q Consensus 347 ~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A-~~~~~~~~~ 413 (818)
.+.+...+..+..+|...|++++|++.|+++ ...| +...+..+..++.+.|+.++| ...|++|++
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999988 3345 577888888889999999888 456777764
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.22 E-value=3.5e-06 Score=75.89 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=60.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC----HHHHHHHHH
Q 003457 322 GVLSACCHAGFIDVGRQIFGSMKRVYGIEPKI---EHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD----VVMWGALLA 393 (818)
Q Consensus 322 ~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~---~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd----~~~~~~Li~ 393 (818)
.+...+...|++++|...|+++.+. .+.+. ..+..+..+|.+.|++++|++.|+++ ...|+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3455566667777777777776654 22222 45556666666677777776666665 22232 455566666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPNNHGVYVV 424 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~ 424 (818)
++...|++++|+..|+++++..|+++.....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 6666677777777777666666665544433
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.19 E-value=5.3e-06 Score=78.49 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcC-C------------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003457 357 GCMVDLLGRCGKVLEAEELIKRMV-W------------------KP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEP 416 (818)
Q Consensus 357 ~~Li~~~~~~g~~~~A~~~~~~m~-~------------------~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P 416 (818)
......+.+.|++++|++.|+++. . .| +...|..+..+|.+.|++++|+..++++++++|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 334455556666666666665541 1 11 124555555566666666666666666666666
Q ss_pred CCcchHHHHHHHHHHhhchHHHHHHHH
Q 003457 417 NNHGVYVVLSNMYAEAESMKMQLEILL 443 (818)
Q Consensus 417 ~~~~~y~~L~~~l~~~G~~~eA~~l~~ 443 (818)
+++.+|..++.+|...|++++|++.++
T Consensus 95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~ 121 (162)
T 3rkv_A 95 TNEKALFRRAKARIAAWKLDEAEEDLK 121 (162)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 666666666666666666666666443
No 182
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.18 E-value=5.7e-06 Score=81.16 Aligned_cols=152 Identities=7% Similarity=-0.032 Sum_probs=99.8
Q ss_pred HHHhCCCHHHHHHHHhhCCC---CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------HHHHH
Q 003457 260 MYTKNGALAKAKALFDSMPE---RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPN---------------DITFV 321 (818)
Q Consensus 260 ~~~~~g~~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd---------------~~t~~ 321 (818)
.....++++++.+.++.-.+ .....+..+...+.+.|++++|+..|++..+....-. ...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 34445556666555554332 2345677778888888999999999988887532211 26777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcC
Q 003457 322 GVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHG 399 (818)
Q Consensus 322 ~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g 399 (818)
.+..+|.+.|++++|+..++++++. .+.+...+..+..+|...|++++|++.|+++ ...| +...+..+...+...+
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 8888889999999999999998876 4557888888999999999999999999887 3344 5677777777777777
Q ss_pred CHHHHH-HHHHHHHh
Q 003457 400 NIEVAE-RVVKEIIA 413 (818)
Q Consensus 400 ~~~~A~-~~~~~~~~ 413 (818)
+.+++. ..+.+++.
T Consensus 171 ~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 171 EARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHC-----------
T ss_pred HHHHHHHHHHHHHhc
Confidence 777666 44555544
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.18 E-value=3.6e-05 Score=88.72 Aligned_cols=168 Identities=8% Similarity=0.021 Sum_probs=131.2
Q ss_pred HHHHHHHHhhCCC---CChhhHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--
Q 003457 267 LAKAKALFDSMPE---RNIATWNAMISGLASHGH----------AEEALDLFRKLEKEQIVPNDITFVGVLSACCHAG-- 331 (818)
Q Consensus 267 ~~~A~~~f~~m~~---~d~~~~~~Li~~~~~~g~----------~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g-- 331 (818)
.++|++.++++.+ .+..+|+.-..++...++ ++++++.++++.+..++ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3566666666654 344567666666666666 88899999999887655 6777877777788888
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHc----------
Q 003457 332 FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCG-KVLEAEELIKRMV-WKP-DVVMWGALLAACKNH---------- 398 (818)
Q Consensus 332 ~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g-~~~~A~~~~~~m~-~~p-d~~~~~~Li~a~~~~---------- 398 (818)
+++++++.++++.+. .+.|..+|+.....+.+.| .++++++.++++. ..| |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 679999999999886 5667888888888888888 8899999988883 344 678888888777663
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHH
Q 003457 399 ----GNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKM 437 (818)
Q Consensus 399 ----g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~e 437 (818)
+.++++++.+++++.++|++..+|+.+..++.+.+++++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999988888887554
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.18 E-value=1.1e-06 Score=78.45 Aligned_cols=80 Identities=16% Similarity=0.140 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHcC-C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHH
Q 003457 366 CGKVLEAEELIKRMV-W---KP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLE 440 (818)
Q Consensus 366 ~g~~~~A~~~~~~m~-~---~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~ 440 (818)
.|++++|++.|+++. . .| +...+..+...|...|++++|++.|++++++.|+++..+..++.+|.+.|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 466677777777662 2 13 245667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHH
Q 003457 441 ILLVQ 445 (818)
Q Consensus 441 l~~~~ 445 (818)
.++..
T Consensus 83 ~~~~a 87 (117)
T 3k9i_A 83 LLLKI 87 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.17 E-value=3.5e-05 Score=88.78 Aligned_cols=165 Identities=13% Similarity=0.046 Sum_probs=138.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 003457 295 HGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGF----------IDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLG 364 (818)
Q Consensus 295 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~----------~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~ 364 (818)
....++|++.++++++..+. +...|+.-..++.+.++ ++++++.++++.+. .+.+..+|+.-...+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34567889999999987544 55667766666777776 99999999999986 6678899999888899
Q ss_pred HcC--CHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh-------
Q 003457 365 RCG--KVLEAEELIKRMV--WKPDVVMWGALLAACKNHG-NIEVAERVVKEIIALEPNNHGVYVVLSNMYAEA------- 432 (818)
Q Consensus 365 ~~g--~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g-~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~------- 432 (818)
+.+ +++++++.++++. ...|..+|+.-...+.+.| .++++++.++++++.+|.+..+|+..+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 7799999999992 3347889999888888999 899999999999999999999999999999885
Q ss_pred -------hchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCCCcceeeecCC
Q 003457 433 -------ESMKMQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNRSTPFVLLNGN 484 (818)
Q Consensus 433 -------G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~~~~~v~l~~~ 484 (818)
+++++|++.++..+ +++|++.++|..+..+
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai----------------------~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAF----------------------FTDPNDQSAWFYHRWL 235 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHH----------------------HHCSSCSHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHH----------------------hhCCCCccHHHHHHHH
Confidence 78899999665553 7899999998887665
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.16 E-value=3.2e-05 Score=69.33 Aligned_cols=86 Identities=16% Similarity=0.097 Sum_probs=43.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHcC-CCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHHHH
Q 003457 359 MVDLLGRCGKVLEAEELIKRMV-WKPD-V---VMWGALLAACKNHGNIEVAERVVKEIIALEPNN---HGVYVVLSNMYA 430 (818)
Q Consensus 359 Li~~~~~~g~~~~A~~~~~~m~-~~pd-~---~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~---~~~y~~L~~~l~ 430 (818)
+...+.+.|++++|++.|+++. ..|+ . ..+..+..++.+.|++++|+..|+++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3344455555555555555541 1222 1 344445555555555555555555555555555 444555555555
Q ss_pred HhhchHHHHHHHHH
Q 003457 431 EAESMKMQLEILLV 444 (818)
Q Consensus 431 ~~G~~~eA~~l~~~ 444 (818)
+.|++++|.+.++.
T Consensus 88 ~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 88 GEGKNTEAQQTLQQ 101 (129)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 55555555554433
No 187
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.14 E-value=1.5e-05 Score=71.57 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHH
Q 003457 320 FVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKN 397 (818)
Q Consensus 320 ~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~ 397 (818)
+..+...+.+.|++++|...|+++++. .+.+...|..+..++.+.|++++|++.|+++ ...| +...+..+..++.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344556677788888888888887765 4456777788888888888888888888877 3344 56778888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCc
Q 003457 398 HGNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 398 ~g~~~~A~~~~~~~~~~~P~~~ 419 (818)
.|++++|+..++++++++|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888888754
No 188
>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A
Probab=98.09 E-value=4.8e-05 Score=71.91 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=80.2
Q ss_pred CCCcccCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEEece--eeeecCCceeccCCCeeEEecCC----ccceee
Q 003457 628 NDNLLLNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSVIGT--VKYIDSKHFYVPKGNAAIEIVSV----SAGIQT 701 (818)
Q Consensus 628 ~~~l~~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--v~~i~~~~~~~~~g~~~~~l~~~----~~~~q~ 701 (818)
..|+|.|++||.| +-||+..|. |+...+ .+..|.+++...+. .+..|.
T Consensus 6 ~~~ii~n~~FE~g-----------------------~~gW~~~g~~~~~~~~~---~~~~G~~sl~vt~R~~~w~G~~~~ 59 (160)
T 1dyo_A 6 DAGYYYHDTFEGS-----------------------VGQWTARGPAEVLLSGR---TAYKGSESLLVRNRTAAWNGAQRA 59 (160)
T ss_dssp CSSEEEEECCSSC-----------------------CTTCEEETTCEEEEESS---CCSSSSCEEEEECCSSTTCEEEEE
T ss_pred CCCeEEcCCcCCC-----------------------CCCEEeecceEEEEccc---cccCCcEEEEEECCccCCcCeeEe
Confidence 4599999999974 236887653 432221 34589999998663 345577
Q ss_pred ee-ccccCCCeEEEEEecCc-ccCccccceEEEEeeCCccee---eEE--EecccCCceeeeE-EEEeccc--eeeEEEE
Q 003457 702 AT-TMLTEGSAYNLDFTLGD-AKDACEGMFVVRVQAGSLVQN---FTV--QSLGTGSVIKHSV-TFKAGSG--STPISFI 771 (818)
Q Consensus 702 ~~-~~~~~g~~y~~tf~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~-~f~a~~~--~~~~~f~ 771 (818)
++ ....||++|++++.+-- .+.. .+.-.+.+..-+..+. ..+ .+..++.|..-+= .|+...+ ..+|-|+
T Consensus 60 ~t~~~l~~g~~Y~~Sa~V~~~~g~~-~~~v~~~l~~~~~~g~~~y~~i~~~~~~~~~W~~L~G~~ft~~~~~~~~~lyve 138 (160)
T 1dyo_A 60 LNPRTFVPGNTYCFSVVASFIEGAS-STTFCMKLQYVDGSGTQRYDTIDMKTVGPNQWVHLYNPQYRIPSDATDMYVYVE 138 (160)
T ss_dssp ECTTTSCTTCEEEEEEEEECCSSSS-CEEEEEEEEEECTTSCEEEEEEEEEEECSSCCEEEEEEEEECCTTCEEEEEEEE
T ss_pred cchhhccCCCEEEEEEEEEECCCCC-ceeEEEEEEEEcCCCCEEEEEEeeEEEcCCccEEEECcEEEeCCCCCEEEEEEE
Confidence 74 23789999999999731 1111 1122222222111111 122 2333677998875 7887655 4456666
Q ss_pred eCcccccCCCCccccccceeeeeecc
Q 003457 772 SYNINQTKDGVFCGPLIDDVVLRASH 797 (818)
Q Consensus 772 ~~~~~~~~~~~~~gp~~d~v~~~~~~ 797 (818)
++....|- .||||+|.+..
T Consensus 139 ~~~~~~d~-------yiDdv~i~~~g 157 (160)
T 1dyo_A 139 TADDTINF-------YIDEAIGAVAG 157 (160)
T ss_dssp ESSCCCCE-------EEEEEEEEETT
T ss_pred CCCCCccE-------EEEEEEEEeCc
Confidence 65322111 59999998643
No 189
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.09 E-value=2e-05 Score=68.18 Aligned_cols=99 Identities=13% Similarity=-0.004 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC---CHHHHHHHHHH
Q 003457 319 TFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP---DVVMWGALLAA 394 (818)
Q Consensus 319 t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p---d~~~~~~Li~a 394 (818)
.+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|++.|+++ ...| +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4445556666666777777777666654 3445666667777777777777777777766 2223 46677777777
Q ss_pred HHHc-CCHHHHHHHHHHHHhcCCCCc
Q 003457 395 CKNH-GNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 395 ~~~~-g~~~~A~~~~~~~~~~~P~~~ 419 (818)
+.+. |++++|++.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7788 888888888888888777643
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.08 E-value=4.8e-06 Score=89.63 Aligned_cols=144 Identities=13% Similarity=-0.024 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003457 282 IATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVD 361 (818)
Q Consensus 282 ~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~ 361 (818)
...+..+...+.+.|++++|+..|++.++. .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 445677777788888888888888887765 343321 11222333332221 1 136788888
Q ss_pred HHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-HhhchHHH
Q 003457 362 LLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA-EAESMKMQ 438 (818)
Q Consensus 362 ~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~-~~G~~~eA 438 (818)
+|.+.|++++|++.|+++ ...| +...|..+..+|...|++++|+..|+++++++|++..++..|..+.. ..++.+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999887 2334 67888889999999999999999999999999999988888888844 44566666
Q ss_pred HHHHHHH
Q 003457 439 LEILLVQ 445 (818)
Q Consensus 439 ~~l~~~~ 445 (818)
.++++.+
T Consensus 319 ~~~~~~~ 325 (338)
T 2if4_A 319 KEMYKGI 325 (338)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 6666655
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=1.9e-05 Score=87.32 Aligned_cols=160 Identities=8% Similarity=-0.058 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHh---CCCC-CHH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQI-VPNDI----TFVGVLSACCHAGFIDVGRQIFGSMKRVY---GIEP-KIE 354 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~----t~~~ll~a~~~~g~~~~A~~~~~~m~~~~---g~~p-~~~ 354 (818)
++..|+..|.+.|++++|.+++.++.+.-. .++.. ..+.+...+...|+++.+..+++...... +..+ -..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 356677778888888888887777654211 11221 22233334445677888888877765431 1222 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcC-------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CC----c
Q 003457 355 HYGCMVDLLGRCGKVLEAEELIKRMV-------WKPD-VVMWGALLAACKNHGNIEVAERVVKEIIALEP---NN----H 419 (818)
Q Consensus 355 ~~~~Li~~~~~~g~~~~A~~~~~~m~-------~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P---~~----~ 419 (818)
++..|...|...|++++|..+++++. .++. ...+..++..|...|++++|..++++++.+.+ +. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 77788888888999999888887761 1222 56778888888999999999999988877542 21 2
Q ss_pred chHHHHHHHHHHhhchHHHHHHHH
Q 003457 420 GVYVVLSNMYAEAESMKMQLEILL 443 (818)
Q Consensus 420 ~~y~~L~~~l~~~G~~~eA~~l~~ 443 (818)
..+..++.++...|++++|.+.+.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456777788888889999888543
No 192
>3p6b_A Cellulose 1,4-beta-cellobiosidase; beta-sandwich, carbohydrate binding, sugar binding protein; 2.00A {Clostridium thermocellum}
Probab=98.07 E-value=1.7e-05 Score=77.75 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=52.0
Q ss_pred ee-eeccccCCCeEEEEEecCcccCccccceEEEEeeCCcce---eeEEE---ecc-c-CCceeeeEEEEecc---ceee
Q 003457 700 QT-ATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLVQ---NFTVQ---SLG-T-GSVIKHSVTFKAGS---GSTP 767 (818)
Q Consensus 700 q~-~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~-~-~~~~~~~~~f~a~~---~~~~ 767 (818)
|. +. .++|.+|+|+|. |.-+ .+..+.|.++.... ..-.+ +.. + ..|++|++.|++.. +..|
T Consensus 95 q~gi~--L~~G~tY~lSFd---AkA~--~~r~i~v~i~~~~~~y~~Y~~~~~~~i~ltt~e~q~yt~~FT~~~~td~~~r 167 (205)
T 3p6b_A 95 HRGIT--LEQGHTYTVRFT---IWSD--KSCRVYAKIGQMGEPYTEYWNNNWNPFNLTPGQKLTVEQNFTMNYPTDDTCE 167 (205)
T ss_dssp EEEEE--ECTTCEEEEEEE---EEES--SCEEEEEEEEESSTTCCEEESSTTCCEEEBTTEEEEEEEEEECCSCCEEEEE
T ss_pred ECCEE--ecCCCEEEEEEE---EEeC--CCceEEEEEecCCCCcceeccCccceEEecCCCCEEEEEEEEeCCCCCCceE
Confidence 64 66 899999999999 4322 23455555543322 11101 232 4 48999999999963 5689
Q ss_pred EEEEeCccccc-CCCCccccccceeeeeec
Q 003457 768 ISFISYNINQT-KDGVFCGPLIDDVVLRAS 796 (818)
Q Consensus 768 ~~f~~~~~~~~-~~~~~~gp~~d~v~~~~~ 796 (818)
|.|.=-+..+. ....+ .||||+|...
T Consensus 168 l~F~lG~~~~~~~~~tv---~iDnVsL~~~ 194 (205)
T 3p6b_A 168 FTFHLGGELAAGTPYYV---YLDDVSLYDP 194 (205)
T ss_dssp EEEECCGGGCCSSSEEE---EEEEEEEECT
T ss_pred EEEECCCCcccCCCCEE---EEEeEEEeCc
Confidence 99954221100 01111 4999999855
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=4.5e-05 Score=70.65 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------Ccc
Q 003457 355 HYGCMVDLLGRCGKVLEAEELIKRMV----WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEPN------NHG 420 (818)
Q Consensus 355 ~~~~Li~~~~~~g~~~~A~~~~~~m~----~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~------~~~ 420 (818)
.+..+...|...|++++|++.++++. ..++ ...+..+...+...|++++|++.+++++++.+. ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44555555666666666666665541 0111 345666677777788888888888777764321 245
Q ss_pred hHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 421 VYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 421 ~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.+..++.++...|++++|.+.++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6778888888888888888866554
No 194
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.07 E-value=6.9e-06 Score=92.32 Aligned_cols=129 Identities=8% Similarity=0.017 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCCC----------------HHHHHHHHHH
Q 003457 332 FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV-WKPD----------------VVMWGALLAA 394 (818)
Q Consensus 332 ~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~-~~pd----------------~~~~~~Li~a 394 (818)
++++|...|+...+. .+.....+..+...|.+.|++++|+..|+++. ..|+ ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 444555555443332 11235678888999999999999999999883 2232 5889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCC
Q 003457 395 CKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQVLFAGLASAADILQNPDFESPPTNLTPNR 474 (818)
Q Consensus 395 ~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~~ll~~~~~~~~~~~~~~~~~~lel~P~~ 474 (818)
|.+.|++++|+..++++++++|++..+|..++.+|.+.|++++|++.++..+ +++|++
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al----------------------~l~P~~ 384 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL----------------------EVNPQN 384 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------TTC---
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH----------------------HhCCCC
Confidence 9999999999999999999999999999999999999999999999777764 888888
Q ss_pred CcceeeecCC
Q 003457 475 STPFVLLNGN 484 (818)
Q Consensus 475 ~~~~v~l~~~ 484 (818)
+.++..+..+
T Consensus 385 ~~a~~~l~~~ 394 (457)
T 1kt0_A 385 KAARLQISMC 394 (457)
T ss_dssp -CHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877766544
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.06 E-value=2.7e-05 Score=72.92 Aligned_cols=109 Identities=14% Similarity=0.048 Sum_probs=76.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCC-----C-----HHHHHHHHHHHHHcCCHHHHHHHHHHc-CC-------C
Q 003457 321 VGVLSACCHAGFIDVGRQIFGSMKRVYGIEP-----K-----IEHYGCMVDLLGRCGKVLEAEELIKRM-VW-------K 382 (818)
Q Consensus 321 ~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p-----~-----~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~-------~ 382 (818)
......+.+.|++++|+..|++.++.....| + ...|..+..++.+.|++++|+..++++ .. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 3444455555666666666665554311100 1 227777777788888888877777766 24 7
Q ss_pred CC-HHHH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 003457 383 PD-VVMW----GALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMY 429 (818)
Q Consensus 383 pd-~~~~----~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l 429 (818)
|+ ...| .....++...|++++|+..|++++++.|++...+..+..+-
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 76 5678 89999999999999999999999999999887776555443
No 196
>3k4z_A Glycoside hydrolase family 9; cellulase, CBHA, CBM4, IG-like, cellulosome, CBM, sugar binding protein; HET: CBI XGP; 2.11A {Clostridium thermocellum dsm 4150}
Probab=98.03 E-value=2.6e-05 Score=80.95 Aligned_cols=88 Identities=18% Similarity=0.229 Sum_probs=53.0
Q ss_pred ee-eeccccCCCeEEEEEecCcccCccccceEEEEeeCCcc---eeeEEE---ecc-c-CCceeeeEEEEecc---ceee
Q 003457 700 QT-ATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLV---QNFTVQ---SLG-T-GSVIKHSVTFKAGS---GSTP 767 (818)
Q Consensus 700 q~-~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~-~-~~~~~~~~~f~a~~---~~~~ 767 (818)
|. +. .++|.+|.|+|. |.-+ .+..+.|.++... ...--+ +.. + ..|++|++.|++.. +..+
T Consensus 74 q~gi~--L~~G~tY~lSF~---akAs--~~r~i~v~i~~~~~~y~~y~~~~~~~v~lt~~e~q~yt~~FT~~~~td~~~r 146 (289)
T 3k4z_A 74 HRGLT--LEQGHTYRVRLK---IWAD--ASCKVYIKIGQMGEPYAEYWNNKWSPYTLTAGKVLEIDETFVMDKPTDDTCE 146 (289)
T ss_dssp EEEEE--ECTTCEEEEEEE---EEES--SCEEEEEEEEESSTTCCEEESTTTCCEEECTTCCEEEEEEEECCSCCEEEEE
T ss_pred ECCEE--ecCCCEEEEEEE---EEeC--CCccEEEEEecCCCCceeeccCcceeEEecCCCCEEEEEEEEcCCCCCcceE
Confidence 65 66 899999999999 4322 2245566554322 111111 122 4 57999999999954 6689
Q ss_pred EEEEeCccccc-CCCCccccccceeeeeecc
Q 003457 768 ISFISYNINQT-KDGVFCGPLIDDVVLRASH 797 (818)
Q Consensus 768 ~~f~~~~~~~~-~~~~~~gp~~d~v~~~~~~ 797 (818)
|.|.=-+.... .. .==.||||++....
T Consensus 147 l~F~lG~~~~~~~~---~tv~iDnVsL~~~~ 174 (289)
T 3k4z_A 147 FTFHLGGELAATPP---YTVYLDDVSLYDPE 174 (289)
T ss_dssp EEEECCGGGCCSSS---EEEEEEEEEEECTT
T ss_pred EEEECCCcccCCCc---eEEEEEEEEEEecc
Confidence 99964221100 01 11149999998765
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.00019 Score=79.19 Aligned_cols=120 Identities=6% Similarity=-0.072 Sum_probs=54.6
Q ss_pred HcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHH
Q 003457 294 SHGHAEEALDLFRKLEK----EQIVPN-DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLG 364 (818)
Q Consensus 294 ~~g~~~~A~~l~~~m~~----~g~~pd-~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~ 364 (818)
..|++++|+.++++... .+..+. ..++..+...+...|++++|..+++.+.....-..+ ...+..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34455555555544432 111222 234444555555555555555555554433111111 334555555555
Q ss_pred HcCCHHHHHHHHHHcC-----C-CC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 365 RCGKVLEAEELIKRMV-----W-KP-D--VVMWGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 365 ~~g~~~~A~~~~~~m~-----~-~p-d--~~~~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
..|++++|..++++.. . .| . ...+..++..+...+++++|...|.++++
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555555555441 1 11 0 12334444444555555555555555543
No 198
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.01 E-value=2.9e-05 Score=71.99 Aligned_cols=133 Identities=9% Similarity=-0.021 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HH
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKEQIV-PN----DITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IE 354 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~ 354 (818)
++..+...|...|++++|+..+++..+.... ++ ...+..+...+...|++++|...+++..+......+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666777777777777665542111 11 135566667777777777777777776553211122 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHcC----CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003457 355 HYGCMVDLLGRCGKVLEAEELIKRMV----WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIALEP 416 (818)
Q Consensus 355 ~~~~Li~~~~~~g~~~~A~~~~~~m~----~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P 416 (818)
.+..+...+...|++++|.+.+++.. ...+ ...+..+...+...|++++|.+.+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 66677777888888888888887762 1112 45677788888899999999999998887543
No 199
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=2.3e-05 Score=69.94 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------cchHH
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN-------HGVYV 423 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~-------~~~y~ 423 (818)
...+..+...+...|++++|+..|+++. ...+...+..+...+...|++++|+..++++++..|++ ...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4567788889999999999999999882 23468889999999999999999999999999998876 78899
Q ss_pred HHHHHHHHhhchHHHHHHHHHHH
Q 003457 424 VLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 424 ~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
.++.++.+.|++++|.+.++...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999776663
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=4.7e-06 Score=77.92 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=61.3
Q ss_pred HcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHh
Q 003457 365 RCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGN----------IEVAERVVKEIIALEPNNHGVYVVLSNMYAEA 432 (818)
Q Consensus 365 ~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~----------~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~ 432 (818)
+.+++++|++.+++. ...| +...|..+..++...++ +++|+..|+++++++|++..+|++++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 444556666666555 2233 45556656655555544 67999999999999999999999999999987
Q ss_pred h-----------chHHHHHHHHHHH
Q 003457 433 E-----------SMKMQLEILLVQV 446 (818)
Q Consensus 433 G-----------~~~eA~~l~~~~~ 446 (818)
| ++++|++.++..+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl 118 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAV 118 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHH
Confidence 5 8999999877764
No 201
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=2.3e-05 Score=84.28 Aligned_cols=152 Identities=10% Similarity=-0.014 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003457 251 AILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHA 330 (818)
Q Consensus 251 ~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 330 (818)
...+..+...+.+.|++++|...|++..+.+.... .+...++.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 34567788899999999999999998764222111 1223344444443321 13677888999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC-HHHHHHHHHH-HHHcCCHHHHHHH
Q 003457 331 GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD-VVMWGALLAA-CKNHGNIEVAERV 407 (818)
Q Consensus 331 g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd-~~~~~~Li~a-~~~~g~~~~A~~~ 407 (818)
|++++|+..++++++. .+.+...|..+..+|...|++++|++.|+++ ...|+ ...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876 4557889999999999999999999999998 34564 4555555554 3456678899999
Q ss_pred HHHHHhcCCCCc
Q 003457 408 VKEIIALEPNNH 419 (818)
Q Consensus 408 ~~~~~~~~P~~~ 419 (818)
|+++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999999998864
No 202
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=7.3e-06 Score=72.89 Aligned_cols=93 Identities=15% Similarity=0.101 Sum_probs=66.0
Q ss_pred cCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 003457 330 AGFIDVGRQIFGSMKRVYG--IEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAE 405 (818)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~g--~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~ 405 (818)
.|++++|+..|+++++. + .+.+...+..+..+|.+.|++++|++.|+++ ...| +...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777776642 1 1234567777888888888888888888877 2334 4777888888888999999999
Q ss_pred HHHHHHHhcCCCCcchHH
Q 003457 406 RVVKEIIALEPNNHGVYV 423 (818)
Q Consensus 406 ~~~~~~~~~~P~~~~~y~ 423 (818)
+.++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999998888766543
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=2.4e-05 Score=68.03 Aligned_cols=89 Identities=13% Similarity=0.073 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 003457 352 KIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN------HGVYV 423 (818)
Q Consensus 352 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~------~~~y~ 423 (818)
+...+..+...+.+.|++++|++.|+++ ...| +...+..+..++.+.|++++|++.+++++++.|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566778888888999999999999887 2334 67888999999999999999999999999999998 66777
Q ss_pred HHHHHHHHhhchHHHHH
Q 003457 424 VLSNMYAEAESMKMQLE 440 (818)
Q Consensus 424 ~L~~~l~~~G~~~eA~~ 440 (818)
.++.++...|++++|.+
T Consensus 83 ~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHhHhhhHh
Confidence 77777777777666544
No 204
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.92 E-value=1.2e-05 Score=87.63 Aligned_cols=110 Identities=8% Similarity=0.015 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKP-DVVMWGALLAACK 396 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~p-d~~~~~~Li~a~~ 396 (818)
..+..+...+.+.|++++|+..|+++++.. ++. ......+++. ...| +...|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 445566666667777777777776665420 000 0000111111 1223 4678899999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 397 NHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 397 ~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
+.|++++|++.++++++++|++..+|..++.+|.+.|++++|++.++...
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999776663
No 205
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.90 E-value=9.7e-06 Score=91.61 Aligned_cols=129 Identities=13% Similarity=-0.027 Sum_probs=89.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHc
Q 003457 287 AMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRC 366 (818)
Q Consensus 287 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~ 366 (818)
.+...+.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|++.++++.+. .+.+...+..+..+|.+.
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 3444566778888888888888876322 5677888888888888888888888888764 445677888888888888
Q ss_pred CCHHHHHHHHHHc-CCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhcCCCC
Q 003457 367 GKVLEAEELIKRM-VWKP-DVVMWGALLAA--CKNHGNIEVAERVVK-----------EIIALEPNN 418 (818)
Q Consensus 367 g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a--~~~~g~~~~A~~~~~-----------~~~~~~P~~ 418 (818)
|++++|++.|+++ ...| +...+..+..+ +.+.|++++|++.++ +++++.|+.
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 8888888888877 2233 33444445444 777888888888888 666666653
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.87 E-value=0.00022 Score=80.22 Aligned_cols=120 Identities=12% Similarity=0.032 Sum_probs=95.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhC--CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHcC---------CCCC-HHHHH
Q 003457 326 ACCHAGFIDVGRQIFGSMKRVYG--IEP----KIEHYGCMVDLLGRCGKVLEAEELIKRMV---------WKPD-VVMWG 389 (818)
Q Consensus 326 a~~~~g~~~~A~~~~~~m~~~~g--~~p----~~~~~~~Li~~~~~~g~~~~A~~~~~~m~---------~~pd-~~~~~ 389 (818)
.+..+|++++|+.++++.++... +.+ ...+++.|...|..+|++++|+.+++++. ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35578899999998888766421 112 25678899999999999999999888762 3344 56789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---chHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 390 ALLAACKNHGNIEVAERVVKEIIA-----LEPNNH---GVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 390 ~Li~a~~~~g~~~~A~~~~~~~~~-----~~P~~~---~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.|...|...|++++|+.+++++++ ++|+++ +....|..++...|++++|+.+++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 467765 45578889999999999999987766
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.84 E-value=8.2e-05 Score=61.93 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYA 430 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~ 430 (818)
...+..+...|.+.|++++|++.|+++ ...| +...+..+...+.+.|++++|++.++++++++|++...+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 566777888888999999999998887 2234 57788889999999999999999999999999999999999998887
Q ss_pred Hhh
Q 003457 431 EAE 433 (818)
Q Consensus 431 ~~G 433 (818)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 208
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.67 E-value=5e-05 Score=65.93 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 384 DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 384 d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
+...+..+...+...|++++|++.|++++++.|+++..+..++.+|.+.|++++|++.++..+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456788889999999999999999999999999999999999999999999999999776664
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.63 E-value=5.1e-05 Score=63.21 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 385 VVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 385 ~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
...+..+...+...|++++|+..++++++..|++...+..++.++.+.|++++|++.++...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56788888899999999999999999999999999999999999999999999999777664
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.63 E-value=0.00021 Score=61.44 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 384 DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 384 d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+...+..+...|...|++++|++.|+++++++|+++.+|..++.+|.+.|++++|++.++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56777888888888888888888888888888888888888888888888888888866555
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.58 E-value=0.00026 Score=62.20 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 003457 352 KIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEP 416 (818)
Q Consensus 352 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P 416 (818)
+...+..+...|.+.|++++|++.|+++ ...| +...|..+..+|...|++++|+..|++++++.|
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3444444555555555555555555444 1122 244444444445555555555555555554444
No 212
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.58 E-value=0.00025 Score=62.34 Aligned_cols=75 Identities=9% Similarity=0.080 Sum_probs=56.0
Q ss_pred HHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 371 EAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 371 ~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+|++.|+++ ...| +...+..+...|...|++++|+..|+++++++|++...+..++.+|.+.|++++|.+.++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666655 3334 56777777878888888888888888888888888888888888888888888888866544
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.54 E-value=0.00014 Score=67.86 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHc-
Q 003457 332 FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGK----------VLEAEELIKRM-VWKP-DVVMWGALLAACKNH- 398 (818)
Q Consensus 332 ~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~----------~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~- 398 (818)
.+++|.+.+++..+. -+.+...|..+..++.+.++ +++|+..|+++ .+.| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 344444444444443 23334444444444444433 34666666666 3344 356666677766655
Q ss_pred ----------CCHHHHHHHHHHHHhcCCCCc
Q 003457 399 ----------GNIEVAERVVKEIIALEPNNH 419 (818)
Q Consensus 399 ----------g~~~~A~~~~~~~~~~~P~~~ 419 (818)
|++++|++.|+++++++|++.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 589999999999999999964
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.48 E-value=0.0012 Score=60.37 Aligned_cols=111 Identities=9% Similarity=-0.116 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH----cCCHHH
Q 003457 296 GHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR----CGKVLE 371 (818)
Q Consensus 296 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~----~g~~~~ 371 (818)
+++++|+++|++..+.| .|+.. |...|...+..++|.+.|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46778888888888776 33333 666676777788888888887764 466777788888877 788888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Q 003457 372 AEELIKRMVWKPDVVMWGALLAACKN----HGNIEVAERVVKEIIALE 415 (818)
Q Consensus 372 A~~~~~~m~~~pd~~~~~~Li~a~~~----~g~~~~A~~~~~~~~~~~ 415 (818)
|++.|++....-+...+..|...|.. .++.++|+++|+++.+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888887544677777888888877 788888888888887764
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.37 E-value=0.00023 Score=60.48 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=59.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHc-CCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhch
Q 003457 359 MVDLLGRCGKVLEAEELIKRM-VWKP-DVV-MWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESM 435 (818)
Q Consensus 359 Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~-~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~ 435 (818)
....+.+.|++++|++.|+++ ...| +.. .+..+..+|...|++++|++.|+++++++|++...+.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 455677888888888888887 2344 466 88888888999999999999999999999998877633 556
Q ss_pred HHHHHHHHH
Q 003457 436 KMQLEILLV 444 (818)
Q Consensus 436 ~eA~~l~~~ 444 (818)
.+|+..++.
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 666665543
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.37 E-value=0.00026 Score=60.18 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=51.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCcc-hHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 391 LLAACKNHGNIEVAERVVKEIIALEPNNHG-VYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 391 Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~-~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
....+.+.|++++|++.|+++++.+|+++. .+..++.+|.+.|++++|++.++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 62 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456788999999999999999999999999 99999999999999999999777664
No 217
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.33 E-value=0.00076 Score=75.85 Aligned_cols=123 Identities=9% Similarity=-0.097 Sum_probs=85.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHc---CCCC---C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--CCCC---C-HHHHH
Q 003457 291 GLASHGHAEEALDLFRKLEKE---QIVP---N-DITFVGVLSACCHAGFIDVGRQIFGSMKRVY--GIEP---K-IEHYG 357 (818)
Q Consensus 291 ~~~~~g~~~~A~~l~~~m~~~---g~~p---d-~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~--g~~p---~-~~~~~ 357 (818)
.+..+|++++|+.++++.++. -+-| + ..+++.|..+|..+|++++|+.++++.++.. -+.+ + ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888776542 1112 2 3567778888888888888888888765431 1122 2 45778
Q ss_pred HHHHHHHHcCCHHHHHHHHHHcC---------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 358 CMVDLLGRCGKVLEAEELIKRMV---------WKPD-VVMWGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 358 ~Li~~~~~~g~~~~A~~~~~~m~---------~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
.|...|..+|++++|+.+++++. ..|+ ..+...+..++...+.+++|+..|+++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999888888762 2233 23455666677788889999999988765
No 218
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=97.29 E-value=0.0011 Score=75.52 Aligned_cols=132 Identities=14% Similarity=0.280 Sum_probs=79.4
Q ss_pred CCCcccCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEEece---eeeecCCceeccCCCeeEEecCC----cccee
Q 003457 628 NDNLLLNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSVIGT---VKYIDSKHFYVPKGNAAIEIVSV----SAGIQ 700 (818)
Q Consensus 628 ~~~l~~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~---v~~i~~~~~~~~~g~~~~~l~~~----~~~~q 700 (818)
.++++.|++||.| +.||+..|. +.-.. + .+..|.+++...+. .+..|
T Consensus 21 ~~~lv~n~~FE~g-----------------------~~gW~~~g~~~~~~~~~-~--~~~~G~~~l~vt~Rt~~w~g~~~ 74 (540)
T 2w5f_A 21 ADYEVVHDTFEVN-----------------------FDGWCNLGVDTYLTAVE-N--EGNNGTRGMMVINRSSASDGAYS 74 (540)
T ss_dssp CCEEEEEECCSSS-----------------------CTTEEEESTTCEEEEET-T--SSGGGSCEEEEECCCSTTCEEEE
T ss_pred CcceEecCCCCCC-----------------------CCCeeecCCceEEEEec-C--CCCCCCeEEEEEccCCCCCCcee
Confidence 6799999999984 347888652 23222 2 34688999988652 22234
Q ss_pred eeeccccCCCeEEEEEecCcccCccccceEEEEeeC-----Cccee---eEEEecccCCceeeeEEEEecccee--eEEE
Q 003457 701 TATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAG-----SLVQN---FTVQSLGTGSVIKHSVTFKAGSGST--PISF 770 (818)
Q Consensus 701 ~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~f~a~~~~~--~~~f 770 (818)
.+...+++|++|++++-+=..+ .....+.+++- ..... +.-.+.-+++|...+-.|+..++.+ +|.|
T Consensus 75 ~~~~~l~~G~~Y~fSawVk~~g---~~~~~v~l~l~~~d~~~~~~~~~~i~~~~~~~g~Wt~L~g~ft~p~~~~~~~lyv 151 (540)
T 2w5f_A 75 EKGFYLDGGVEYKYSVFVKHNG---TGTETFKLSVSYLDSETEEENKEVIATKDVVAGEWTEISAKYKAPKTAVNITLSI 151 (540)
T ss_dssp ECTTTCCTTCEEEEEEEEECCS---SSEEEEEEEEEEEETTTCCEEEEEEEEEEEETTCCEEEEEEEECCTTEEEEEEEE
T ss_pred eccceecCCCEEEEEEEEEeCC---CCCceEEEEEEEecCCCCCceEEEeeEEEEeCCeeEEEEeEEEecCCCeEEEEEE
Confidence 4433388999999999974211 22333555441 11111 2222333778999988998877555 4555
Q ss_pred EeCcccccCCCCccccccceeeeeec
Q 003457 771 ISYNINQTKDGVFCGPLIDDVVLRAS 796 (818)
Q Consensus 771 ~~~~~~~~~~~~~~gp~~d~v~~~~~ 796 (818)
+++ . . .-=.||+|+|...
T Consensus 152 e~~--~---~---~~f~vDdvsl~~~ 169 (540)
T 2w5f_A 152 TTD--S---T---VDFIFDDVTITRK 169 (540)
T ss_dssp EES--S---C---CCEEEEEEEEEEC
T ss_pred EcC--C---C---CCEEEEEEEEecC
Confidence 542 1 1 1126999999753
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.19 E-value=0.0016 Score=55.16 Aligned_cols=64 Identities=9% Similarity=0.103 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 383 PDVVMWGALLAACKNHGN---IEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 383 pd~~~~~~Li~a~~~~g~---~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
.|...+..+..++...++ .++|..+++++++++|+++.++..++..+.+.|++++|++.++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456777777777765544 6888888888888888888888888888888888888888777764
No 220
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.18 E-value=0.0072 Score=55.16 Aligned_cols=109 Identities=13% Similarity=0.012 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CCChHHHH
Q 003457 95 NPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSV----SSDLNNAR 170 (818)
Q Consensus 95 ~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~----~g~~~~A~ 170 (818)
++++|++.|++..+.|. |+.. |...|...+..++|.+.+++..+.| +...+..|..+|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34555555555555441 2222 3344444445555555555555543 34444445555544 45555555
Q ss_pred HHHHHhhcC-CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcC
Q 003457 171 QVFDEIRNR-TLNVWTTMISGYAQ----SFRANEALMLFDQMLMEG 211 (818)
Q Consensus 171 ~l~~~m~~~-d~~~~~~Li~~~~~----~g~~~~A~~l~~~m~~~g 211 (818)
+.|++..+. +..++..|...|.. .+++++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555544432 34444455555544 445555555555554443
No 221
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.11 E-value=0.0014 Score=56.15 Aligned_cols=68 Identities=10% Similarity=-0.056 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 350 EPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 350 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
+.+...+..+...|.+.|++++|++.|+++ ...| +...|..+..+|...|++++|++.|++++++.|+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 345677788888888888888888888877 2334 4677888888888888888888888888887654
No 222
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.06 E-value=0.014 Score=62.22 Aligned_cols=137 Identities=11% Similarity=-0.047 Sum_probs=76.4
Q ss_pred CChhhHHHHHHHH--HHc---CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH---cC--CHHHHH---HHHHHHHH
Q 003457 280 RNIATWNAMISGL--ASH---GHAEEALDLFRKLEKEQIVPN-DITFVGVLSACCH---AG--FIDVGR---QIFGSMKR 345 (818)
Q Consensus 280 ~d~~~~~~Li~~~--~~~---g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~---~g--~~~~A~---~~~~~m~~ 345 (818)
.+..+|...+.+. ... ....+|+.+|++.++. .|+ ...+..+..+|.- .+ ...... +.++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3566666666543 333 3357889999998886 344 3445444444331 00 001111 11111111
Q ss_pred HhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 346 VYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 346 ~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
....+.+..+|..+...+...|++++|++.++++ ...|+...|..+...+...|++++|.+.|++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 1122445666666666666667777777777766 234666666666666677777777777777777777763
No 223
>2y6h_A Xylanase, CBM4-2; hydrolase; 1.08A {Rhodothermus marinus} PDB: 2y64_A* 2y6g_A 2y6l_A* 2y6j_A* 2y6k_A* 3jxs_A 1k42_A 1k45_A
Probab=97.05 E-value=0.056 Score=45.47 Aligned_cols=139 Identities=22% Similarity=0.362 Sum_probs=82.0
Q ss_pred cCCCCCcCCCCCCCCCcceeecCCCCCCCCCCCCcEEe-ce-e------eeecCCceeccCCCeeEEe--cC---Cccce
Q 003457 633 LNGGFEFGPDFLSNSTEGVLLESAPSPIQSALQQWSVI-GT-V------KYIDSKHFYVPKGNAAIEI--VS---VSAGI 699 (818)
Q Consensus 633 ~ng~fe~~p~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~-v------~~i~~~~~~~~~g~~~~~l--~~---~~~~~ 699 (818)
.||+||+.|. |+++.- ....-||-.+ |. | |.++. --.|+|..-+-. ++ +..-+
T Consensus 6 ing~festpa-------gvvtdl-----a~gvegw~lnvgs~vtnppvfev~e~--~dap~g~kvlavtvng~gnnp~~i 71 (167)
T 2y6h_A 6 INGGFESTPA-------GVVTDL-----AEGVEGWDLNVGSSVTNPPVFEVLET--SDAPEGNKVLAVTVNGVGNNPFNI 71 (167)
T ss_dssp SSTTSTTSCS-------EECCCT-----TTSSTTEEEEECTTCSSCCEEEEEEC--TTCSSSSEEEEEECCCCCSSGGGE
T ss_pred ccCccccCcc-------eeeeec-----ccccceeEeeccccccCCCeEEEEec--cCCCCCceEEEEEeccCCCCCcce
Confidence 6999999885 454432 2567899872 31 2 22221 246899876554 22 33333
Q ss_pred e--eeeccccCCCeEEEEEecCcccCcccc-ceEEEEeeCCcc----eeeEEEecccCCceeeeEEEEeccceeeEE--E
Q 003457 700 Q--TATTMLTEGSAYNLDFTLGDAKDACEG-MFVVRVQAGSLV----QNFTVQSLGTGSVIKHSVTFKAGSGSTPIS--F 770 (818)
Q Consensus 700 q--~~~~~~~~g~~y~~tf~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~f~a~~~~~~~~--f 770 (818)
| .|...+.||-+|+-|-. |. ..| -.++...||.++ +.++.|.. +..|+.|.|.|+-....|-|. +
T Consensus 72 ~ata~pvnv~pgvtytyti~---ar--aeqdgavvsftvgnqs~~eygrlh~qqi-ttewqp~tfeftvsdqetvirapi 145 (167)
T 2y6h_A 72 QATALPVNVRPGVTYTYTIR---AR--AEQDGAVVSFTVGNQSFDEYGRLHHQQI-TTEWQPFTFEFTVSDQETVIRAPI 145 (167)
T ss_dssp EEEEEEEECCTTCEEEEEEE---EE--ESSSCEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEEECCSSCSEEEEEE
T ss_pred eeeeeeeeccCCceEEEEEE---Ee--eccCCcEEEEEecCccHHHhhhhhhhhe-eecccceEEEEEeccceeEEEece
Confidence 3 34444899999998887 32 223 245667777765 34444332 667999999999887655432 2
Q ss_pred EeCcccccCCCCccccccceeeeee
Q 003457 771 ISYNINQTKDGVFCGPLIDDVVLRA 795 (818)
Q Consensus 771 ~~~~~~~~~~~~~~gp~~d~v~~~~ 795 (818)
| -||..+.. ---.||...|..
T Consensus 146 h-fgyaan~g---ntiyid~l~i~d 166 (167)
T 2y6h_A 146 H-FGYAANVG---NTIYIDGLAIVD 166 (167)
T ss_dssp E-CCCGGGTT---CEEEEEEEEEEE
T ss_pred e-eeeeccCC---CeEEEeEEEEEe
Confidence 2 24443322 223678777653
No 224
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.88 E-value=0.0056 Score=67.58 Aligned_cols=91 Identities=12% Similarity=0.014 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHHHHhC--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHcC---------CCCC-HHHHHHHHH
Q 003457 330 AGFIDVGRQIFGSMKRVYG--IEPK----IEHYGCMVDLLGRCGKVLEAEELIKRMV---------WKPD-VVMWGALLA 393 (818)
Q Consensus 330 ~g~~~~A~~~~~~m~~~~g--~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~---------~~pd-~~~~~~Li~ 393 (818)
.|++++|+.++++.++... +.|+ ..+++.|..+|..+|++++|+.+++++. ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4567777777766554311 1122 3566677777777777777777776651 2233 356777777
Q ss_pred HHHHcCCHHHHHHHHHHHHh-----cCCCCcc
Q 003457 394 ACKNHGNIEVAERVVKEIIA-----LEPNNHG 420 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~-----~~P~~~~ 420 (818)
.|...|++++|+.+++++++ .+|+++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 77777777777777777765 3566543
No 225
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0022 Score=70.91 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=67.4
Q ss_pred HcCCHHHHHHHHHHcC---------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCc---chHHHHH
Q 003457 365 RCGKVLEAEELIKRMV---------WKPD-VVMWGALLAACKNHGNIEVAERVVKEIIA-----LEPNNH---GVYVVLS 426 (818)
Q Consensus 365 ~~g~~~~A~~~~~~m~---------~~pd-~~~~~~Li~a~~~~g~~~~A~~~~~~~~~-----~~P~~~---~~y~~L~ 426 (818)
..|++++|+.++++.. ..|+ ..+++.|..+|...|++++|+.+++++++ .+|+++ ..|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578999999988761 2233 46899999999999999999999999987 355554 5789999
Q ss_pred HHHHHhhchHHHHHHHHHHH
Q 003457 427 NMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 427 ~~l~~~G~~~eA~~l~~~~~ 446 (818)
.+|..+|++++|+.+++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999776664
No 226
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.75 E-value=0.011 Score=65.12 Aligned_cols=99 Identities=10% Similarity=-0.048 Sum_probs=65.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHh--CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHcC---------CCCC-HHH
Q 003457 324 LSACCHAGFIDVGRQIFGSMKRVY--GIEPK----IEHYGCMVDLLGRCGKVLEAEELIKRMV---------WKPD-VVM 387 (818)
Q Consensus 324 l~a~~~~g~~~~A~~~~~~m~~~~--g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~---------~~pd-~~~ 387 (818)
+..+.+.|++++|+.++++..+.. -+.|+ ..+++.|+..|..+|++++|+.+++++. ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556677777777777766431 11222 4567777777888888888877777651 2233 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCCcchH
Q 003457 388 WGALLAACKNHGNIEVAERVVKEIIA-----LEPNNHGVY 422 (818)
Q Consensus 388 ~~~Li~a~~~~g~~~~A~~~~~~~~~-----~~P~~~~~y 422 (818)
++.|...|...|++++|+.+++++++ .+|+++.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 77888888888888888888888776 467765433
No 227
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.72 E-value=0.007 Score=64.42 Aligned_cols=129 Identities=11% Similarity=0.084 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHH--HHcC---CHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHH---cC-----C---HHHHHHHH
Q 003457 314 VPNDITFVGVLSAC--CHAG---FIDVGRQIFGSMKRVYGIEPK-IEHYGCMVDLLGR---CG-----K---VLEAEELI 376 (818)
Q Consensus 314 ~pd~~t~~~ll~a~--~~~g---~~~~A~~~~~~m~~~~g~~p~-~~~~~~Li~~~~~---~g-----~---~~~A~~~~ 376 (818)
+.+...|...+++. ...+ +..+|..+|+++++. .|+ ...|..+..+|.. .+ . ...+++..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 44566666666543 3333 358899999999975 554 4555544444431 11 1 11222222
Q ss_pred HHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 377 KRMV-WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 377 ~~m~-~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
..+. ...+..+|..+...+...|++++|+..++++++++|+ ...|..++.++.-.|++++|.+.++...
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2222 2357888888888788889999999999999999986 7788899999999999999999665553
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.71 E-value=0.019 Score=68.64 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=21.1
Q ss_pred HhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 003457 161 SVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQM 207 (818)
Q Consensus 161 ~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m 207 (818)
...|++++|.++.+.+ .+...|..|...+.+.++++.|++.|.++
T Consensus 663 l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3344444444443332 13344555555555555555555555544
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.68 E-value=0.042 Score=65.68 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=27.8
Q ss_pred HHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 261 YTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLE 309 (818)
Q Consensus 261 ~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 309 (818)
..+.|+++.|.++.+.+. +...|..+...+.+.++++.|+++|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 344566666666655442 34566666666666666666666666553
No 230
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.65 E-value=0.0097 Score=65.70 Aligned_cols=87 Identities=10% Similarity=0.072 Sum_probs=70.9
Q ss_pred HHHHHHcCCHHHHHHHHHHcC------CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----cCCCC---cch
Q 003457 360 VDLLGRCGKVLEAEELIKRMV------WKPD----VVMWGALLAACKNHGNIEVAERVVKEIIA-----LEPNN---HGV 421 (818)
Q Consensus 360 i~~~~~~g~~~~A~~~~~~m~------~~pd----~~~~~~Li~a~~~~g~~~~A~~~~~~~~~-----~~P~~---~~~ 421 (818)
+..+.++|++++|++++++.. ..|+ ..+++.|+.+|...|++++|+.+++++++ ..|++ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445678899999999998772 1232 46889999999999999999999999886 34555 457
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 422 YVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 422 y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
++.|+.+|..+|++++|+.+++...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8899999999999999999776654
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.33 E-value=0.0065 Score=56.00 Aligned_cols=89 Identities=15% Similarity=-0.031 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHcC-CC-C--CHHHHHHHHHHHHHcCCHHHH
Q 003457 332 FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCG---KVLEAEELIKRMV-WK-P--DVVMWGALLAACKNHGNIEVA 404 (818)
Q Consensus 332 ~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g---~~~~A~~~~~~m~-~~-p--d~~~~~~Li~a~~~~g~~~~A 404 (818)
....+++.|.+..+. -+++..+...+..++.+.+ +.++++.+|++.. .. | +...+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~--~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHcc--CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 456667777766553 3478888888888888888 5668888888772 22 4 356677777788999999999
Q ss_pred HHHHHHHHhcCCCCcchH
Q 003457 405 ERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 405 ~~~~~~~~~~~P~~~~~y 422 (818)
+++++++++++|++..+.
T Consensus 91 ~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhcCCCCHHHH
Confidence 999999999999855433
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.20 E-value=0.024 Score=48.70 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHcC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 003457 352 KIEHYGCMVDLLGRCGKVLEAEELIKRMV---------WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 352 ~~~~~~~Li~~~~~~g~~~~A~~~~~~m~---------~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y 422 (818)
+..-+..|...+.+.|+++.|...|+.+. ..+....+..|..++.+.|++++|+..+++++++.|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445566666667777777776666651 113467888999999999999999999999999999988877
Q ss_pred HHHH
Q 003457 423 VVLS 426 (818)
Q Consensus 423 ~~L~ 426 (818)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6665
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.19 E-value=0.025 Score=52.10 Aligned_cols=63 Identities=6% Similarity=-0.079 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 383 PDVVMWGALLAACKNHG---NIEVAERVVKEIIALE-P-NNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 383 pd~~~~~~Li~a~~~~g---~~~~A~~~~~~~~~~~-P-~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
++..+...+..++.+.+ +.++++.++++.++.+ | ++.++++.|+-.+.+.|++++|.+.++..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l 97 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 97 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56666666666666666 5557777777777766 5 44667777777777777777777765554
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.04 E-value=0.039 Score=56.35 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=48.4
Q ss_pred HHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHh-hchHH
Q 003457 369 VLEAEELIKRM-VWKPD---VVMWGALLAACKNH-----GNIEVAERVVKEIIALEPNN-HGVYVVLSNMYAEA-ESMKM 437 (818)
Q Consensus 369 ~~~A~~~~~~m-~~~pd---~~~~~~Li~a~~~~-----g~~~~A~~~~~~~~~~~P~~-~~~y~~L~~~l~~~-G~~~e 437 (818)
..+|...++++ ...|+ -..|..|...|.+. |+.++|.+.|+++++++|+. ..++..+++.|++. |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555555555 24454 34666666666663 67777777777777777753 77777777777663 77777
Q ss_pred HHHHHHHH
Q 003457 438 QLEILLVQ 445 (818)
Q Consensus 438 A~~l~~~~ 445 (818)
|.+.++..
T Consensus 259 a~~~L~kA 266 (301)
T 3u64_A 259 FDEALDRA 266 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77755444
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.91 E-value=0.014 Score=50.29 Aligned_cols=63 Identities=10% Similarity=-0.067 Sum_probs=53.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 384 DVVMWGALLAACKNHGNIEVAERVVKEIIALE-------PNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 384 d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~-------P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
+..-+..++..+.+.|+++.|...|+++++.. +....++..|+.+|.+.|++++|+.+++...
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44556678889999999999999999998853 3456789999999999999999999777664
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.85 E-value=0.00018 Score=77.74 Aligned_cols=365 Identities=9% Similarity=0.029 Sum_probs=202.1
Q ss_pred ChHHHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 003457 46 DHFAASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKAC 125 (818)
Q Consensus 46 d~~~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~ 125 (818)
.+.+|+.|-..+ .+.+++.+|+.-|-+ ..|+..|..+|....+.|.+++-+..+...++..- +...=+.|+-+|
T Consensus 53 ~p~VWs~LgkAq--L~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAKAQ--LQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHHHT--TTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred CccHHHHHHHHH--HccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 455666666666 666777766665533 34555567777777777777777777665554422 223334566777
Q ss_pred HccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc------------------------CCH
Q 003457 126 SNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRN------------------------RTL 181 (818)
Q Consensus 126 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~------------------------~d~ 181 (818)
++.+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77777655444321 23443344556666667777777666655432 245
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 003457 182 NVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALVHMY 261 (818)
Q Consensus 182 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~ 261 (818)
.+|..+-.+|...+++..|.-.--.++ +.|| ....++..|...|.+++.+.+++...... .....+|+-|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 578888888888888877765544444 2222 23456667788888888888888877543 45778899999999
Q ss_pred HhCCCHHHHHHHHhhCCC-----------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 003457 262 TKNGALAKAKALFDSMPE-----------RNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHA 330 (818)
Q Consensus 262 ~~~g~~~~A~~~f~~m~~-----------~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 330 (818)
+|-. .++-.+.++..-. .....|.-+.-.|.+-.+++.|...+ .++ .|+......+.....+.
T Consensus 274 sKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltM---i~h--~~~Aw~h~~Fkdii~KV 347 (624)
T 3lvg_A 274 SKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKV 347 (624)
T ss_dssp HSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTT---TSC--HHHHCCGGGGTTTGGGC
T ss_pred HhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHH---HhC--ChhhccHHHHHHHHHHc
Confidence 8863 4444444443322 24557888888888888888765432 111 00000001111112222
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-------------CCCCCHHHHHHHHHHHHH
Q 003457 331 GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-------------VWKPDVVMWGALLAACKN 397 (818)
Q Consensus 331 g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-------------~~~pd~~~~~~Li~a~~~ 397 (818)
.+.+---+...-.++ ..|. ..+-|+..+...=|..++.++|++. ....+...-.++-..|..
T Consensus 348 aN~EiyYKAi~FYL~---e~P~--lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 348 ANVELYYRAIQFYLE---FKPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp SCSHHHHHHHHHHTT---SCCT--TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH---hChH--HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 222211111111111 1222 2333444444444444455555444 223345555566666777
Q ss_pred cCCHHHHHHHHH-----------HHHhcCCCCcchHHHHHHHHHHhhchHHHHHH
Q 003457 398 HGNIEVAERVVK-----------EIIALEPNNHGVYVVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 398 ~g~~~~A~~~~~-----------~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l 441 (818)
..|++.-....+ +-++..+- .+....-+.+|.+.++|++++++
T Consensus 423 EEDy~~LR~SId~ydNFD~i~LA~rLEkHeL-~eFRrIAA~LYkkn~rw~qsi~l 476 (624)
T 3lvg_A 423 EEDYQALRTSIDAYDNFDNISLAQRLEKHEL-IEFRRIAAYLFKGNNRWKQSVEL 476 (624)
T ss_dssp TTCCHHHHHTTSSCCCSCTTHHHHHHHTCSS-HHHHHHHHHHHHTTCHHHHHSSC
T ss_pred hhhHHHHHHHHHHhccccHHHHHHHHhhCch-HHHHHHHHHHHHhcccHHHHHHH
Confidence 777664433211 11111221 44555666777888888888764
No 237
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.75 E-value=0.075 Score=44.64 Aligned_cols=76 Identities=9% Similarity=-0.055 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 003457 350 EPKIEHYGCMVDLLGRCGK---VLEAEELIKRM-VWKP-DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVV 424 (818)
Q Consensus 350 ~p~~~~~~~Li~~~~~~g~---~~~A~~~~~~m-~~~p-d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~ 424 (818)
+.|...+..+..++...++ .++|..+|+++ ...| +......+...+.+.|++++|+..|+++++.+|+ ..-...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4567777788887765555 68888888887 3445 5778888888889999999999999999999988 333333
Q ss_pred HH
Q 003457 425 LS 426 (818)
Q Consensus 425 L~ 426 (818)
+.
T Consensus 82 i~ 83 (93)
T 3bee_A 82 II 83 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 238
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.53 E-value=2.5 Score=48.40 Aligned_cols=113 Identities=11% Similarity=-0.004 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHH
Q 003457 297 HAEEALDLFRKLEKEQIVPNDITFVGVLS----ACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEA 372 (818)
Q Consensus 297 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~----a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A 372 (818)
+.+.|..+|....+.. ..+......+-. .....+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 5666777776665432 123222222221 122223234444444443322 23333333333444456777777
Q ss_pred HHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 373 EELIKRMVWKP--DVVMWGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 373 ~~~~~~m~~~p--d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
.+.|+.|...+ ...-..=+..++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 77777764322 121111133455566777777777766653
No 239
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.93 E-value=0.99 Score=42.47 Aligned_cols=129 Identities=12% Similarity=0.077 Sum_probs=79.4
Q ss_pred HHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 003457 158 RCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEK 237 (818)
Q Consensus 158 ~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~ 237 (818)
....++|+++.|.++.+++ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.++..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4456778888888877665 4566788888888888888888888877642 3344444555677776666
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 238 VHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKL 308 (818)
Q Consensus 238 i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m 308 (818)
+-+.....| . ++.....+...|+++++.++|.+..+-..... .....|..+.|.++.+++
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-----~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-----VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-----HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-----HHHHcCcHHHHHHHHHHh
Confidence 665555554 1 23334455566777777777766654221111 112245566666666554
No 240
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=94.75 E-value=0.24 Score=45.28 Aligned_cols=84 Identities=14% Similarity=0.218 Sum_probs=50.5
Q ss_pred ccCCCeEEEEEecCcccCccccceEEEEeeCCcc--eeeEEEecc-cCCceeee--EEEEeccceeeEEEEeCcccccCC
Q 003457 706 LTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLV--QNFTVQSLG-TGSVIKHS--VTFKAGSGSTPISFISYNINQTKD 780 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~--~~f~a~~~~~~~~f~~~~~~~~~~ 780 (818)
+.....|.|+|..+. .-.....+.++|.+.. +.+.|...+ =..|.+.+ +.++|-.+..+|.+ .+. .
T Consensus 48 v~~aG~Y~l~~ryan---~~~~~~~~~l~VNG~~~~~~v~~p~Tg~w~~w~~~~~~v~L~aG~ntI~l~~--~~~----~ 118 (144)
T 2w47_A 48 APSSGSYALIFRYAN---GTTANRPMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVANLNQGNNVIRATA--IAS----D 118 (144)
T ss_dssp ESSSEEEEEEEEEEC---CSSSCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEE--CST----T
T ss_pred CCCCcEEEEEEEEEC---CCCCCeEEEEEECCeEeeeEEEecCCCCCCeeEEEEEEEEECCCccEEEEEE--eCC----C
Confidence 444678999999543 2223456778887754 455554433 12355554 44444444444443 221 2
Q ss_pred CCccccccceeeeeeccCccc
Q 003457 781 GVFCGPLIDDVVLRASHGFKL 801 (818)
Q Consensus 781 ~~~~gp~~d~v~~~~~~~~~~ 801 (818)
+||-||.+.|.+.+..++
T Consensus 119 ---g~~niD~i~v~~~~~~~~ 136 (144)
T 2w47_A 119 ---GGPNVDYLKVFSANAFQP 136 (144)
T ss_dssp ---CCCEEEEEEEEECTTSCC
T ss_pred ---CCEEEeEEEEEeCCCCCC
Confidence 789999999998776654
No 241
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=94.75 E-value=0.13 Score=47.13 Aligned_cols=89 Identities=10% Similarity=0.080 Sum_probs=52.6
Q ss_pred ccCCCeEEEEEecCcccCccccceEEEEeeCCcc-eeeEEEecc-cCCceeeeEEEEeccceeeEEEEeCcccccCCCCc
Q 003457 706 LTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLV-QNFTVQSLG-TGSVIKHSVTFKAGSGSTPISFISYNINQTKDGVF 783 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~f~a~~~~~~~~f~~~~~~~~~~~~~ 783 (818)
+.....|.|+|..+ +.-.....+.++|.+.. +.+.|...+ -..|.+.+....-....=+|.|.+.+. .
T Consensus 47 v~~aG~Y~l~~rya---ng~~~~r~~~l~VNG~~~~~v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~~~~~----~--- 116 (145)
T 2w3j_A 47 AASAKTYTAQIRFG---NGGTSARRATVVVNDSQIKTLDFPTNSNWTQWQTVNVDIPLKAGTNSIKLVAETA----D--- 116 (145)
T ss_dssp ESSCEEEEEEEEEE---CCSSSCCCEEEEETTEEEEEECCCCCSCTTSCEEEEEEEEECSEEEEEEEEECST----T---
T ss_pred CCCCeEEEEEEEEE---CCCCCCeEEEEEECCeEeeEEEecCCCCCCeeEEEEEEEEECCCceEEEEEEecC----c---
Confidence 44578999999964 22234567788887754 455554333 122555544433333333455544322 2
Q ss_pred cccccceeeeeeccCccchhH
Q 003457 784 CGPLIDDVVLRASHGFKLQLR 804 (818)
Q Consensus 784 ~gp~~d~v~~~~~~~~~~~~~ 804 (818)
+||-||.+.|.+.+.+.+...
T Consensus 117 g~~niD~i~v~~~~~~~~~~~ 137 (145)
T 2w3j_A 117 GLANIDSIRVTGNGITPAACP 137 (145)
T ss_dssp CCCEEEEEEECSTTEEECCCC
T ss_pred CCEEEEEEEEEcCCCCCCCCc
Confidence 789999999987776555433
No 242
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.57 E-value=1.2 Score=41.92 Aligned_cols=102 Identities=14% Similarity=0.166 Sum_probs=75.0
Q ss_pred hcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 003457 60 SSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRSLNCCKQIHT 139 (818)
Q Consensus 60 ~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~~~~A~~~~~ 139 (818)
..+|+++.|.++.+.+ .+...|..|.....+.|+++-|.++|.+... +..+.-.|...|+.+...++-+
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence 5789999999998877 5678899999999999999999999987754 3445555666777777776666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhc
Q 003457 140 HVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRN 178 (818)
Q Consensus 140 ~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~ 178 (818)
.....| + ++.....+.-.|+++++.++|.+..+
T Consensus 85 iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~~r 117 (177)
T 3mkq_B 85 IAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEGGS 117 (177)
T ss_dssp HHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHCCC
Confidence 555544 1 24444556677888888888866543
No 243
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=94.42 E-value=0.4 Score=44.41 Aligned_cols=86 Identities=10% Similarity=0.115 Sum_probs=50.8
Q ss_pred ccCCCeEEEEEecCcccC-------ccccceEEEEeeCCcc-eeeEEEecc-cCCceeeeEEEEeccceeeEEEEeCccc
Q 003457 706 LTEGSAYNLDFTLGDAKD-------ACEGMFVVRVQAGSLV-QNFTVQSLG-TGSVIKHSVTFKAGSGSTPISFISYNIN 776 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~f~a~~~~~~~~f~~~~~~ 776 (818)
+...-.|.|+|..+.... .......+.|+|.+.. +.+.|...+ -..|.+.++...-....=+|+|.+..
T Consensus 56 ~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp~Tg~W~~~~~~tv~V~L~aG~NtI~~~~~~-- 133 (156)
T 2wz8_A 56 VPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFFNTRGWNTYRTDIIDVYLNAGNNTIRFYNGT-- 133 (156)
T ss_dssp ESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEECCCSSTTCCEEEEEEEEECSEEEEEEEECCS--
T ss_pred cCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeCCCCCCCcceEEEEEEEECCCceEEEEEecC--
Confidence 445789999998532211 0123678899997655 566664433 23455554444444444566676631
Q ss_pred ccCCCCccccccceeeeeecc
Q 003457 777 QTKDGVFCGPLIDDVVLRASH 797 (818)
Q Consensus 777 ~~~~~~~~gp~~d~v~~~~~~ 797 (818)
... |+|-||.+.|.+..
T Consensus 134 -~~~---~~pdiD~i~v~~~~ 150 (156)
T 2wz8_A 134 -SGS---YAPNIDKIAIAALE 150 (156)
T ss_dssp -TTC---BCCEEEEEEEEC--
T ss_pred -CCC---CCcEEEEEEEeccc
Confidence 123 99999999997654
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.40 E-value=0.47 Score=41.99 Aligned_cols=93 Identities=15% Similarity=-0.039 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHcCC-C-C--CHHHHHHHHHHHHHcCCHHH
Q 003457 331 GFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLE---AEELIKRMVW-K-P--DVVMWGALLAACKNHGNIEV 403 (818)
Q Consensus 331 g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~---A~~~~~~m~~-~-p--d~~~~~~Li~a~~~~g~~~~ 403 (818)
..+..+++.|...... + .++..+--.+..++.+..+..+ ++.+++.... . | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3445556666655543 2 3777777788888888877665 8888887732 2 3 24456667778999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHH
Q 003457 404 AERVVKEIIALEPNNHGVYVVL 425 (818)
Q Consensus 404 A~~~~~~~~~~~P~~~~~y~~L 425 (818)
|++.++.++++.|++..+....
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999977665533
No 245
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}
Probab=94.21 E-value=0.53 Score=56.43 Aligned_cols=119 Identities=15% Similarity=0.220 Sum_probs=76.2
Q ss_pred CCCCCcEEecee---eeecCCceeccCCCeeEEecCC---ccceeeeeccccCCCeEEEEEecCcccCccccceEEEEee
Q 003457 662 SALQQWSVIGTV---KYIDSKHFYVPKGNAAIEIVSV---SAGIQTATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQA 735 (818)
Q Consensus 662 ~~~~~w~~~~~v---~~i~~~~~~~~~g~~~~~l~~~---~~~~q~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~ 735 (818)
..+-+|+++|.+ +.+.+- .+...++|.++ .+++|+++. .+||+.|++.=.+. +.......+.|.+
T Consensus 1031 g~ld~W~~sG~~~~a~i~~s~-----~~n~~l~i~g~~~~~svsQ~lTg-L~pG~~Yav~v~Vd---n~s~akA~itV~~ 1101 (1531)
T 3ecq_A 1031 GTLKHWTISGDASKAEIVKSQ-----GANDMLRIQGNKEKVSLTQKLTG-LKPNTKYAVYVGVD---NRSNAKASITVNT 1101 (1531)
T ss_dssp SCCTTSEEESCGGGEEEEECT-----TSCEEEEECSBSSCEEEEEECCS-CCTTCEEEEEEEEE---ECSSSCEEEEEEC
T ss_pred CCCcccccccccceeEEEecc-----CCceeEEecCCCccceEEEEEcc-cCCCcEEEEEEEEc---cCCCceeEEEEec
Confidence 357899999875 444432 56788889773 467799997 99999999776642 2222345677777
Q ss_pred CCcceeeEE-Ee-------------c-------ccCCceeeeEEEEeccc--eeeEEEEeCcccccCCCCccccccceee
Q 003457 736 GSLVQNFTV-QS-------------L-------GTGSVIKHSVTFKAGSG--STPISFISYNINQTKDGVFCGPLIDDVV 792 (818)
Q Consensus 736 ~~~~~~~~~-~~-------------~-------~~~~~~~~~~~f~a~~~--~~~~~f~~~~~~~~~~~~~~gp~~d~v~ 792 (818)
|+...+--. ++ . +++-+++-.+.|+|.++ .++|++.--..+ -+ -.+|||+
T Consensus 1102 G~k~~sn~t~~SiakNyV~a~~hnt~~~n~tv~~~syfQrm~V~FTap~d~~~vtLtLs~~aG~-~~------vyfDDvR 1174 (1531)
T 3ecq_A 1102 GEKEVTTYTNKSLALNYVKAYAHNTRRNNATVDDTSYFQNMYAFFTTGSDVSNVTLTLSREAGD-EA------TYFDEIR 1174 (1531)
T ss_dssp SSCEEEEEESSCCCCCCBTTSTTCSSGGGCSBTTBCCCEEEEEEEECCSCCTTCEEEEEECSBS-SC------EEEEEEE
T ss_pred CCEEEEeeeecccccceeeeeecccccccccccCCcEEEEEEEEEEcCCCCceeEEEEEecCCC-Cc------eEeeeEE
Confidence 764221101 11 0 01237778999999774 578888663322 11 2699999
Q ss_pred eeec
Q 003457 793 LRAS 796 (818)
Q Consensus 793 ~~~~ 796 (818)
|+.-
T Consensus 1175 IVe~ 1178 (1531)
T 3ecq_A 1175 TFEN 1178 (1531)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 9854
No 246
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=93.85 E-value=0.3 Score=59.27 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=77.7
Q ss_pred CCCcEEece--eeeecCCceeccCCCeeEEecCCccceeeeeccccCCCeEEEEEecCcccCccccceEEEEeeCCcce-
Q 003457 664 LQQWSVIGT--VKYIDSKHFYVPKGNAAIEIVSVSAGIQTATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLVQ- 740 (818)
Q Consensus 664 ~~~w~~~~~--v~~i~~~~~~~~~g~~~~~l~~~~~~~q~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~~- 740 (818)
+-+|+++|. ++.+++ |..-+++.+..+++|+++. .+||+.|++.-. ..+.......+.|.+|+...
T Consensus 799 ~~~W~~~g~~~~~~~~~-------~n~~l~~~g~~~vsQ~lt~-L~~G~~Y~~~v~---v~~~s~~~a~i~v~~g~~~~a 867 (1376)
T 2zxq_A 799 TDNWTVSGSGKAEVEGD-------NNAMLRLTGKVDVSQRLTD-LKAGQKYALYVG---VDNRSTGDASVTVTSGGKVLA 867 (1376)
T ss_dssp HHTSEEESSSEEEEECS-------SSCEEEEESSEEEEEECCS-CCTTCEEEEEEE---EEECSSSCEEEEEEETTEEEE
T ss_pred cccceecCcceEEEecc-------CCeEEeccCCceEEEEecC-CCCCCeEEEEEE---EecCCCCeeeEEEecCCEEEe
Confidence 559999874 565553 6667888888888999987 999999999776 33444445677888777433
Q ss_pred eeEE-Ee---cc---------------cCCceeeeEEEEecc-ceeeEEEEeCcccccCCCCccccccceeeeeecc
Q 003457 741 NFTV-QS---LG---------------TGSVIKHSVTFKAGS-GSTPISFISYNINQTKDGVFCGPLIDDVVLRASH 797 (818)
Q Consensus 741 ~~~~-~~---~~---------------~~~~~~~~~~f~a~~-~~~~~~f~~~~~~~~~~~~~~gp~~d~v~~~~~~ 797 (818)
.-.+ ++ .| ++-+++-.+.|+|.+ ..++|++.-....+-+ -.+|||+|+.-.
T Consensus 868 sn~t~~S~a~n~v~a~~h~~~~~t~~~~syfQrm~V~Fta~~~~~~tltls~~a~G~~~------~~fDDvRiv~~~ 938 (1376)
T 2zxq_A 868 TNSTGKSIAKNYIKAYGHNTNSNTENGSSYFQNMYVFFTAPENGDATVTLSHKSTDGAH------TYFDDVRIVENQ 938 (1376)
T ss_dssp EEEESSCCCCCCBTTSTTCTTSCSBTTBCCCEEEEEEEECCTTCCCEEEEEECSCCSCE------EEEEEEEEEECC
T ss_pred eeeEecchhhcceecccccCcccccCCCceEEEEEEEEEcCCCCcEEEEEecccCCCCc------eEeeeEEEeecc
Confidence 1111 11 11 123777899999986 5788888664311111 169999998643
No 247
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.63 E-value=0.28 Score=50.10 Aligned_cols=83 Identities=8% Similarity=0.104 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHH-cCC
Q 003457 333 IDVGRQIFGSMKRVYGIEPK---IEHYGCMVDLLGRC-----GKVLEAEELIKRM-VWKPD--VVMWGALLAACKN-HGN 400 (818)
Q Consensus 333 ~~~A~~~~~~m~~~~g~~p~---~~~~~~Li~~~~~~-----g~~~~A~~~~~~m-~~~pd--~~~~~~Li~a~~~-~g~ 400 (818)
...|+..+++.++ +.|+ ...|..|...|.+. |+.++|.+.|+++ .+.|+ ..++......++. .|+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3455555555554 3555 45677777777773 7888888888777 34552 5666666776666 488
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 003457 401 IEVAERVVKEIIALEPNN 418 (818)
Q Consensus 401 ~~~A~~~~~~~~~~~P~~ 418 (818)
.++|.+.++++++..|..
T Consensus 256 ~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 256 RAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 888888888888877763
No 248
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.47 E-value=0.11 Score=45.93 Aligned_cols=80 Identities=6% Similarity=-0.085 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcC-C-CCcchHHHHHHHHHHhhchHHHH
Q 003457 367 GKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEV---AERVVKEIIALE-P-NNHGVYVVLSNMYAEAESMKMQL 439 (818)
Q Consensus 367 g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~---A~~~~~~~~~~~-P-~~~~~y~~L~~~l~~~G~~~eA~ 439 (818)
.....+.+.|.+.. ..++..+--.+..++.+..+... ++.+++..++.+ | ...++.+.|+-.+.+.|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 33445555555441 24777777788888888886655 999999999877 6 56789999999999999999999
Q ss_pred HHHHHHH
Q 003457 440 EILLVQV 446 (818)
Q Consensus 440 ~l~~~~~ 446 (818)
+..+.++
T Consensus 95 ~~~~~lL 101 (126)
T 1nzn_A 95 KYVRGLL 101 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887774
No 249
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.24 E-value=2.4 Score=37.75 Aligned_cols=135 Identities=11% Similarity=0.097 Sum_probs=96.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHH
Q 003457 292 LASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLE 371 (818)
Q Consensus 292 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~ 371 (818)
+.-.|..++..++..+.... .+..-||.++--....-+-+...+.++.+-+.+. ...+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFD--------------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFD--------------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSC--------------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcC--------------cHhhhcHHH
Confidence 34457888888888887764 3566677777666666666666666666544322 235666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 372 AEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 372 A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
....+-.+. .+.......++.+..+|+.|.-.+++...+.-.|-+++.+.-++.+|.+.|+..+|.++++..
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 666666664 355666777888899999999999999876666666999999999999999999999977655
No 250
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=92.83 E-value=0.77 Score=41.59 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=47.0
Q ss_pred ccCCCeEEEEEecCcccCccccceEEEEeeCCcce---eeEEEecc-cCCceeee--EEEEeccceeeEEEEeCcccccC
Q 003457 706 LTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLVQ---NFTVQSLG-TGSVIKHS--VTFKAGSGSTPISFISYNINQTK 779 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~--~~f~a~~~~~~~~f~~~~~~~~~ 779 (818)
+...-.|.|+|..+.. -.....+.++|.+... .+.|...+ -..|.+.+ +..+|-.+..+| .+.+.
T Consensus 47 v~~aG~Y~l~~ryang---~~~~r~~~l~VNG~~~g~~~v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l--~~~~~---- 117 (139)
T 2w87_A 47 ATSSGRRTLTIRYANG---GTANRNGSLVINGGSNGNYTVSLPTTGAWTTWQTATIDVDLVQGNNIVQL--SATTA---- 117 (139)
T ss_dssp ESSCEEEEEEEEEECC---SSSCCCEEEEETTTTTCEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEE--EESST----
T ss_pred CCCCcEEEEEEEEECC---CCCCceEEEEECCEEcceeEEEecCCCCCCccEEEEEEEEECCCceEEEE--EEcCC----
Confidence 4447899999996432 2234567888877653 66654443 22366553 444444444444 44321
Q ss_pred CCCccccccceeeeee
Q 003457 780 DGVFCGPLIDDVVLRA 795 (818)
Q Consensus 780 ~~~~~gp~~d~v~~~~ 795 (818)
. ++|-||.+.|.+
T Consensus 118 ~---g~~niD~i~v~~ 130 (139)
T 2w87_A 118 E---GLPNIDSLSVVG 130 (139)
T ss_dssp T---CCCEEEEEEEES
T ss_pred C---CCEEEEEEEEec
Confidence 2 789999999975
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.62 E-value=0.51 Score=42.49 Aligned_cols=71 Identities=17% Similarity=0.084 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHH---HHHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 350 EPKIEHYGCMVDLLGRCGKVL---EAEELIKRM-VWKP--DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 350 ~p~~~~~~~Li~~~~~~g~~~---~A~~~~~~m-~~~p--d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
.++..+--.+..++.+..+.+ +++.+++.. ...| .......|.-++.+.|++++|+++.+.++++.|++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 566666667777777766543 456666655 2223 2344455555677777777777777777777777543
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.23 E-value=12 Score=38.66 Aligned_cols=168 Identities=8% Similarity=0.025 Sum_probs=99.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHh
Q 003457 153 VNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALML----FDQMLMEGFEPNSVTLASVLSACAQ 228 (818)
Q Consensus 153 ~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll~~~~~ 228 (818)
|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ ++.+.+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 445555677778888888776543 2334455665554443 4445556778888777777776655
Q ss_pred cCChh-HHHHHHHHHHH----cC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHc---CCH
Q 003457 229 SGCLE-LGEKVHVFVKM----RG--FEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASH---GHA 298 (818)
Q Consensus 229 ~g~~~-~A~~i~~~~~~----~g--~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~---g~~ 298 (818)
...-+ .-.++.+++++ .| ..-++..+..+...|.+.+++.+|+..|-.-...+...+..++.-+.+. |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 22334444443 32 2246788889999999999999999887633333555555555444443 444
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003457 299 EEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRV 346 (818)
Q Consensus 299 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~ 346 (818)
.++--.+ -..++ -|...++...|..+++...+.
T Consensus 185 ~e~dlf~--------------~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVAEFF--------------SRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHH--------------HHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred chHHHHH--------------HHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 3322111 11222 345678888888888876654
No 253
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.81 E-value=6.7 Score=34.91 Aligned_cols=63 Identities=10% Similarity=0.000 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 003457 184 WTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGF 247 (818)
Q Consensus 184 ~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~ 247 (818)
.+.-+.....+|+-|+-.+++..+... .+|+......+..+|.+.|+..++..++.++-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334455566667777777777664332 366666666777777777777777777777777664
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=91.69 E-value=0.67 Score=41.20 Aligned_cols=75 Identities=17% Similarity=0.070 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHc-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchH
Q 003457 349 IEPKIEHYGCMVDLLGRCGKV---LEAEELIKRM-VWKP--DVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVY 422 (818)
Q Consensus 349 ~~p~~~~~~~Li~~~~~~g~~---~~A~~~~~~m-~~~p--d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y 422 (818)
-.|+..+--.+..++.+..+. .+++.+++.. ...| ....+..|.-++.+.|++++|+++.+.++++.|++..+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 345666666677777776654 3566666655 2223 244555566677778888888888888888888765544
Q ss_pred H
Q 003457 423 V 423 (818)
Q Consensus 423 ~ 423 (818)
.
T Consensus 116 ~ 116 (134)
T 3o48_A 116 A 116 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 255
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.55 E-value=0.43 Score=55.80 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=46.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHH
Q 003457 392 LAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 392 i~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~ 442 (818)
..-|...|+++.|+++.+++....|.+-.+|..|+.+|.+.|+|+.|+-.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 344678999999999999999999999999999999999999999998744
No 256
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=91.47 E-value=1.2 Score=39.45 Aligned_cols=96 Identities=15% Similarity=0.200 Sum_probs=50.8
Q ss_pred CCeeEEecC--CccceeeeeccccCCCeEEEEEecCcccCccccceEEEEeeCCcce--eeEEEecc-cCCceeeeEEEE
Q 003457 686 GNAAIEIVS--VSAGIQTATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLVQ--NFTVQSLG-TGSVIKHSVTFK 760 (818)
Q Consensus 686 g~~~~~l~~--~~~~~q~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~f~ 760 (818)
|...|.+.+ +..+.=++. +...-.|.|+|..+.. -.....+.++|.+... .+.|...+ =..|.+.+..+.
T Consensus 27 G~g~v~~~~~~g~~v~~~V~--v~~aG~Y~l~~rya~~---~~~~~~~~l~VnG~~~~~~v~~p~tg~W~~w~~~~~~v~ 101 (127)
T 2vzp_A 27 GTGFVNYDNVAGSSVEWTVT--VPSAGTYDVVVRYANG---TTTSRPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVT 101 (127)
T ss_dssp TTCEEEECSSTTCEEEEEEE--ESSSEEEEEEEEEECC---SSSCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEE
T ss_pred cccEeeCCCCCCCEEEEEEE--cCCCCEEEEEEEEEcC---CCCCeEEEEEECCEEeeeEEEecCCCCCCceEEEEEEEE
Confidence 344556543 333333333 4447899999996432 2234567788877552 35553333 123555443343
Q ss_pred eccceeeEEEEeCcccccCCCCccccccceeee
Q 003457 761 AGSGSTPISFISYNINQTKDGVFCGPLIDDVVL 793 (818)
Q Consensus 761 a~~~~~~~~f~~~~~~~~~~~~~~gp~~d~v~~ 793 (818)
-....=+|.|.+... . ++|-||.+.|
T Consensus 102 L~aG~ntI~l~~~~~----~---~~~niD~i~v 127 (127)
T 2vzp_A 102 LAAGVNKIKAVATTA----N---GGPNVDKITL 127 (127)
T ss_dssp ECSEEEEEEEEECST----T---CCCEEEEEEC
T ss_pred ECCCceEEEEEEeCC----C---CCeEEEEEEC
Confidence 333333444444221 2 7899998865
No 257
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.42 E-value=16 Score=43.58 Aligned_cols=249 Identities=10% Similarity=-0.017 Sum_probs=123.1
Q ss_pred HHHHhCCChHHHHHHHHHhhc----CCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-------CCCHHHHHHHHH
Q 003457 158 RCYSVSSDLNNARQVFDEIRN----RTLN--VWTTMISGYAQSFRANEALMLFDQMLMEGF-------EPNSVTLASVLS 224 (818)
Q Consensus 158 ~~y~~~g~~~~A~~l~~~m~~----~d~~--~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-------~pd~~t~~~ll~ 224 (818)
-+....|+.++++.+++.... .+.. .-..+.-+....|..+++++++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 345667788888777776654 1222 222333445555555567777766554320 011112223333
Q ss_pred HHHhcCC-hhHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhCCCHHHHHHHHhhCCC-CChh--hHHHHHHHHHHcCCH
Q 003457 225 ACAQSGC-LELGEKVHVFVKMRGFEMGAI--LGTALVHMYTKNGALAKAKALFDSMPE-RNIA--TWNAMISGLASHGHA 298 (818)
Q Consensus 225 ~~~~~g~-~~~A~~i~~~~~~~g~~~~~~--~~~~Li~~~~~~g~~~~A~~~f~~m~~-~d~~--~~~~Li~~~~~~g~~ 298 (818)
++.-.|. -+++...+..++... ..... ...+|...+.-.|+-+....++..+.+ .+.. -.-.+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 3333332 234455555555432 11111 122334445566666666666655432 1222 222333345566777
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHH---HHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 003457 299 EEALDLFRKLEKEQIVPND-ITFV---GVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEE 374 (818)
Q Consensus 299 ~~A~~l~~~m~~~g~~pd~-~t~~---~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~ 374 (818)
+.+..+++.+... .+. .-|. .+.-+|+..|+.....+++..+... ...++.....+.-++...|+.+.+.+
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 7777777777653 232 2222 2344666777877777777776653 23333333333334445666666667
Q ss_pred HHHHcCCCCCHHHHHH--HHHHHHHcCC-HHHHHHHHHHHH
Q 003457 375 LIKRMVWKPDVVMWGA--LLAACKNHGN-IEVAERVVKEII 412 (818)
Q Consensus 375 ~~~~m~~~pd~~~~~~--Li~a~~~~g~-~~~A~~~~~~~~ 412 (818)
+++.+....|..+-.. +.-+....|+ ..+++..+.++.
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 7665533333333222 2223333433 256666776665
No 258
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.42 E-value=3.4 Score=37.56 Aligned_cols=55 Identities=7% Similarity=0.042 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 366 CGKVLEAEELIKRMV--WKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 366 ~g~~~~A~~~~~~m~--~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
.++.++|.++|+.+. .+.=...|.....--.++|+.+.|.+++.+++.+.|...+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 356666666666551 1111555555555556777777777777777777776433
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.40 E-value=28 Score=37.99 Aligned_cols=96 Identities=13% Similarity=0.138 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hCCCCC----H
Q 003457 284 TWNAMISGLASHGHAEEALDLFRKLEKE--QIVPN---DITFVGVLSACCHAGFIDVGRQIFGSMKRV-YGIEPK----I 353 (818)
Q Consensus 284 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~pd---~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~-~g~~p~----~ 353 (818)
....|...|...|++.+|.+++.++... +.... ...+...++.|...+++.+|..++.++... ....++ .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456788889999999999999998642 22211 134556678899999999999999886532 112222 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 354 EHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 354 ~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
..+..++..+...+++.+|.+.|.++
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45677788888899999998877665
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.17 E-value=15 Score=39.25 Aligned_cols=57 Identities=5% Similarity=-0.038 Sum_probs=27.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 323 VLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 323 ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
++..|...|++.+|..++..+.+...-..| ..++..-+++|...+++.++...+.++
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 445555555555555555555443211111 233444455555555555555555444
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.17 E-value=22 Score=36.61 Aligned_cols=131 Identities=8% Similarity=-0.031 Sum_probs=72.0
Q ss_pred HHHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHH----HHHHHHcCCCCCHHHHHHHHHH
Q 003457 49 AASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFL----YMNMRRTGFAPNQHTFTFVLKA 124 (818)
Q Consensus 49 ~~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~l----f~~m~~~g~~pd~~ty~~ll~~ 124 (818)
.|..+..-| .+++++++|++++..- ...+.+.|+...|-++ .+-..+.+++++......++..
T Consensus 35 ~~Rtl~~Ry--~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 35 TLRTIANRY--VRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHH--HHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHH--HHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344444445 6677777777766432 3344556776555554 4444556777787777777777
Q ss_pred HHccCChH-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 003457 125 CSNVRSLN-CCKQIHTHVS----KSG--LDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYA 192 (818)
Q Consensus 125 ~~~~g~~~-~A~~~~~~m~----~~g--~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~ 192 (818)
+.....-+ .-.++.+.++ +.| ..-++.....+...|.+.+++.+|+..|-.-...+...+..++.-+.
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 65532111 1223333333 222 12266677777788888888888777765222223444444443333
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=89.12 E-value=23 Score=36.77 Aligned_cols=167 Identities=11% Similarity=0.040 Sum_probs=95.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHh
Q 003457 153 VNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALML----FDQMLMEGFEPNSVTLASVLSACAQ 228 (818)
Q Consensus 153 ~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll~~~~~ 228 (818)
|.++..=|.+.+++++|.+++..- ...+.+.|+...|.++ ++-+.+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 344555577888888888876543 2234455655544443 3445556777887777777776665
Q ss_pred cCChh-HHHHHHHHHH----HcC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHH
Q 003457 229 SGCLE-LGEKVHVFVK----MRG--FEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEA 301 (818)
Q Consensus 229 ~g~~~-~A~~i~~~~~----~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A 301 (818)
...-+ .-..+.++++ +.| ..-++.....+...|.+.+++.+|+..|-.-.++.+..+..++--+.+.+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 44321 1223333333 223 2346778888899999999999998888432223335555554444433332211
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003457 302 LDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKR 345 (818)
Q Consensus 302 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~ 345 (818)
+...-..++ -|...++...|..+++...+
T Consensus 187 --------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 --------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 122222222 35566788888887766554
No 263
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.34 E-value=9.1 Score=41.92 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=65.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHcC-----CCCC----HHH
Q 003457 321 VGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK----IEHYGCMVDLLGRCGKVLEAEELIKRMV-----WKPD----VVM 387 (818)
Q Consensus 321 ~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~----~~~~~~Li~~~~~~g~~~~A~~~~~~m~-----~~pd----~~~ 387 (818)
..|...+...|++.+|..++..+.....-..+ ...+...++.|...+++.+|..+++++. ..++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 35667888889999999988887654222222 4567777888888899999888888762 1222 245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 003457 388 WGALLAACKNHGNIEVAERVVKEIIA 413 (818)
Q Consensus 388 ~~~Li~a~~~~g~~~~A~~~~~~~~~ 413 (818)
+...+..+.+.+++.+|-+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 56666677788888888888777654
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.66 E-value=24 Score=43.65 Aligned_cols=128 Identities=7% Similarity=-0.023 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHcCC-CCCHHHHHHHHH
Q 003457 318 ITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPK---IEHYGCMVDLLGRCGKVLEAEELIKRMVW-KPDVVMWGALLA 393 (818)
Q Consensus 318 ~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~---~~~~~~Li~~~~~~g~~~~A~~~~~~m~~-~pd~~~~~~Li~ 393 (818)
.-|..++..+.+.+.++.+.++-+..++..+..++ ...|..+.+.+...|++++|...+-.++. .--...+..|+.
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~ 979 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34666677777777777777776666654111111 12566777777777777777777766531 123455666666
Q ss_pred HHHHcCCHHHH------------HHHHH-HHHhc-CCCC-cchHHHHHHHHHHhhchHHHHH-HHHHH
Q 003457 394 ACKNHGNIEVA------------ERVVK-EIIAL-EPNN-HGVYVVLSNMYAEAESMKMQLE-ILLVQ 445 (818)
Q Consensus 394 a~~~~g~~~~A------------~~~~~-~~~~~-~P~~-~~~y~~L~~~l~~~G~~~eA~~-l~~~~ 445 (818)
.++..|..+.- .+++. ++... .+.+ +..|..|=..+...|++..|-. +++..
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 55555544333 33332 22222 2332 2334444445557777777777 44443
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.32 E-value=3.7 Score=37.96 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRMV 380 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 380 (818)
.+.-..+..+|.+.+++++|+.+++.++
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444456667777777777777777764
No 266
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=86.89 E-value=58 Score=38.83 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=24.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 003457 67 YATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMRR 108 (818)
Q Consensus 67 ~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~~ 108 (818)
.+.++|.++..|+ |-.+++++.+.++.+.+.++|+++..
T Consensus 220 ~l~~Iy~k~~~~d---y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 220 KSFDFLMNMPNCD---YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHSSSCC---HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCchh---HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3555555554333 44556666677778888888877653
No 267
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=85.85 E-value=0.008 Score=65.22 Aligned_cols=238 Identities=11% Similarity=0.077 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 003457 150 LHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQS 229 (818)
Q Consensus 150 ~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~ 229 (818)
+.+|..|..++.+.+++.+|++.| ++..|+..|..++.+..+.|.+++-++++...++..-.|... +.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHHhh
Confidence 346677777777777777777665 334566667777777778888888777776665543333333 4577777877
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCC------------------------CChhhH
Q 003457 230 GCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPE------------------------RNIATW 285 (818)
Q Consensus 230 g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~------------------------~d~~~~ 285 (818)
+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+.. .++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 77665433321 24443444566777777777777777766542 366788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 003457 286 NAMISGLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGR 365 (818)
Q Consensus 286 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~ 365 (818)
-.+-.+|...+.+.-|.-+--.++-. || .+..++..|...|.+++-+.+++.-... -....-.|+-|.-.|++
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsK 275 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHS
T ss_pred HHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHh
Confidence 88888888888887776655555432 11 1234566678888888888888775521 23456677777777776
Q ss_pred cCCHHHHHHHHHHcCCC---C-------CHHHHHHHHHHHHHcCCHHHHHH
Q 003457 366 CGKVLEAEELIKRMVWK---P-------DVVMWGALLAACKNHGNIEVAER 406 (818)
Q Consensus 366 ~g~~~~A~~~~~~m~~~---p-------d~~~~~~Li~a~~~~g~~~~A~~ 406 (818)
- ++++.++.++..-.+ | ....|.-++..|.+-.++|.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5 556666666544211 1 23456777777777777776643
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.28 E-value=11 Score=33.86 Aligned_cols=64 Identities=5% Similarity=-0.060 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC-CcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 382 KPDVVMWGALLAACKNHGN---IEVAERVVKEIIALEPN-NHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 382 ~pd~~~~~~Li~a~~~~g~---~~~A~~~~~~~~~~~P~-~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
.|+..+--.+..++.+..+ ..+++.+++..++..|. ..++++.|+-.+.+.|+|++|.++.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3455555555555555543 34566666666665553 3455666666666666666666654443
No 269
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.65 E-value=11 Score=43.96 Aligned_cols=53 Identities=9% Similarity=-0.035 Sum_probs=39.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Q 003457 326 ACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV 380 (818)
Q Consensus 326 a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~ 380 (818)
.|...|+++.|+++-++.... .+.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 455677888888887777664 45557788888888888888888888887775
No 270
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.46 E-value=7.5 Score=35.94 Aligned_cols=111 Identities=14% Similarity=0.029 Sum_probs=60.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHcC----CCC-CHHHHH
Q 003457 322 GVLSACCHAGFIDVGRQIFGSMKRVYGIEPKI-------EHYGCMVDLLGRCGKVLEAEELIKRMV----WKP-DVVMWG 389 (818)
Q Consensus 322 ~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~-------~~~~~Li~~~~~~g~~~~A~~~~~~m~----~~p-d~~~~~ 389 (818)
.-+..+...+.++.|+-+.+.+....+.+++. .++..+.+++...+++.+|...|+++. .-+ ......
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33556666777777777766655443333441 345556667777777777777776641 001 000010
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHH
Q 003457 390 ALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLV 444 (818)
Q Consensus 390 ~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~ 444 (818)
.+. ....... -..+ +.+.+..+-++.+|.+.|++++|+.+++.
T Consensus 105 ~~~----~~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 105 STG----NSASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp -----------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccc----ccCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 010 0000000 0111 33457788899999999999999997654
No 271
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.39 E-value=11 Score=33.52 Aligned_cols=72 Identities=7% Similarity=-0.051 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHc-CCCCC
Q 003457 312 QIVPNDITFVGVLSACCHAGF---IDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRM-VWKPD 384 (818)
Q Consensus 312 g~~pd~~t~~~ll~a~~~~g~---~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m-~~~pd 384 (818)
+-.|+..+--.+..++.+..+ ..+++.+++.+.+. +-......+..|.-++.+.|++++|.+..+.+ ...|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 344555555555556666554 34566777776654 21112445556666777777777777777766 44554
No 272
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.18 E-value=8.1 Score=47.95 Aligned_cols=115 Identities=8% Similarity=-0.103 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CC-----------------
Q 003457 322 GVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--WK----------------- 382 (818)
Q Consensus 322 ~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~----------------- 382 (818)
.++..+.+.+.++.+.++... .+.+....-.+..+|..+|++++|.+.|+++. ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~------~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhh------ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 455667777777776664432 34555555677788899999999999998872 00
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCc----chHHHHHHHHHHhhchHHHHHHH
Q 003457 383 ------PDVVMWGALLAACKNHGNIEVAERVVKEIIALEP-NNH----GVYVVLSNMYAEAESMKMQLEIL 442 (818)
Q Consensus 383 ------pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P-~~~----~~y~~L~~~l~~~G~~~eA~~l~ 442 (818)
.-...|..++..+.+.+.++.++++.+.+++..+ ++. ..|..+...+...|++++|...+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 1124577788888899999999999998888554 332 26778888889999999998844
No 273
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=82.80 E-value=6.3 Score=35.82 Aligned_cols=50 Identities=12% Similarity=-0.034 Sum_probs=43.4
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 396 KNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 396 ~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
...++.++|.++|+.++++....+..|...+..-.|+|+++.|.+++...
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34589999999999999887777888899999999999999999987655
No 274
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=81.74 E-value=3.7 Score=44.14 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHHH
Q 003457 388 WGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQV 446 (818)
Q Consensus 388 ~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~~ 446 (818)
...++..+...|++++++..+++++..+|-+...|..++.+|.+.|+..+|++.++...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456677788888888888888888888888888888888888888888888766553
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.03 E-value=23 Score=35.43 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=66.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHH----HHHHHHHHHHHc
Q 003457 291 GLASHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIE----HYGCMVDLLGRC 366 (818)
Q Consensus 291 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~----~~~~Li~~~~~~ 366 (818)
...+.|..++|++....-++..+. |...-..++..+|-.|++++|.+-++...+. .|+.. .|..+|++
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a---- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA---- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH----
Confidence 345667777887777777766332 5555566777777788888888777776653 44432 33333322
Q ss_pred CCHHHHH-HHHHHcC----CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHhcCCCCcc
Q 003457 367 GKVLEAE-ELIKRMV----WKPDVVMWGALLAAC--KNHGNIEVAERVVKEIIALEPNNHG 420 (818)
Q Consensus 367 g~~~~A~-~~~~~m~----~~pd~~~~~~Li~a~--~~~g~~~~A~~~~~~~~~~~P~~~~ 420 (818)
+... ++|.--. ......-...|+.+. ...|+.++|.++-.++++..|..+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 1221110 111222333344443 3467777777777777777776443
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.71 E-value=57 Score=33.85 Aligned_cols=111 Identities=14% Similarity=0.072 Sum_probs=58.2
Q ss_pred HHHHHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHH----HHHHHcCCCCCHHHHHHHHHHH
Q 003457 50 ASRLLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLY----MNMRRTGFAPNQHTFTFVLKAC 125 (818)
Q Consensus 50 ~~~Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf----~~m~~~g~~pd~~ty~~ll~~~ 125 (818)
|..+..-| .+++++++|++++..- ...+.+.|+...|-++- +-..+.++++|......++..+
T Consensus 38 ~RTi~~Ry--~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARY--SKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHH--HhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444 6666666666665322 33345556655544433 4444556777777666666666
Q ss_pred HccCCh-HHHHHHHHHHH----HcC--CCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 003457 126 SNVRSL-NCCKQIHTHVS----KSG--LDLDLHVVNCLVRCYSVSSDLNNARQVF 173 (818)
Q Consensus 126 ~~~g~~-~~A~~~~~~m~----~~g--~~p~~~~~~~Li~~y~~~g~~~~A~~l~ 173 (818)
.....- ..-..+.+.++ +.| ..-|......+...|.+.+++.+|+..|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 554421 11122333332 222 2225556666666666666766666665
No 277
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.13 E-value=2.3 Score=42.73 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=38.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 394 ACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 394 a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
...+.|+.++|++..+..++.+|.|......|+.+|+-.|+|+.|.+-++.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3456777788888887777888887877788888888888888887754444
No 278
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=77.26 E-value=14 Score=39.63 Aligned_cols=70 Identities=16% Similarity=0.066 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCCCcHHH
Q 003457 183 VWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKM-----RGFEMGAIL 253 (818)
Q Consensus 183 ~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~-----~g~~~~~~~ 253 (818)
+...++..+...|++++|+..++.+.... +-+...+..+|.++.+.|+..+|.+.|+.+.+ .|++|...+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44556677778888888888888877664 56777888888888888888888888877654 266666554
No 279
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=76.01 E-value=33 Score=41.96 Aligned_cols=148 Identities=14% Similarity=0.248 Sum_probs=79.5
Q ss_pred CCCCCcCCCCCCCCCcceeecCCC--CC---------CCCCCCCcEEeceeeeecCCceeccCCCeeEEecC---Ccc--
Q 003457 634 NGGFEFGPDFLSNSTEGVLLESAP--SP---------IQSALQQWSVIGTVKYIDSKHFYVPKGNAAIEIVS---VSA-- 697 (818)
Q Consensus 634 ng~fe~~p~~~~~~~~~~~~~~~~--~~---------~~~~~~~w~~~~~v~~i~~~~~~~~~g~~~~~l~~---~~~-- 697 (818)
--+||.-+ +.-++||+|..- .| .+.+--||- ++.|+ -|=+|..+|--.+ +..
T Consensus 954 ~qDFE~v~----qG~~PFV~g~~~g~~d~rtHLSe~h~pyTq~GW~----~k~~d----DVldG~wSlK~~~~~~~~glv 1021 (1376)
T 2zxq_A 954 TNGFENNA----QGIWPFVVSGSEGVEDNRIHLSELHAPFTRAGWD----VKKMD----DVLDGTWSVKVNGLTQKGTLV 1021 (1376)
T ss_dssp EECSSSCS----STTTTEEECSTTSSBSCSEEEEECCTTTTSTTST----TCCSC----SCSSSSEEEEECSCTTCCEEE
T ss_pred eeccccCC----CCccceEEcCCCCcCCccchhhhccCcccccccc----ccccc----ceeeccceEEecccccccceE
Confidence 45788833 455677777531 11 233445773 33343 2447788887753 222
Q ss_pred ---ceeeeeccccCCCeEEEEEecCcccCccccceEEEEeeCCcc-eeeEEEecc-cCCcee--eeEEEEec-cceeeEE
Q 003457 698 ---GIQTATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLV-QNFTVQSLG-TGSVIK--HSVTFKAG-SGSTPIS 769 (818)
Q Consensus 698 ---~~q~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~--~~~~f~a~-~~~~~~~ 769 (818)
|-|+|. -.||.+|+|+|.. -.+.++.=.+-+-.+... ......+.. ..| .+ +++.|++. ...|.+-
T Consensus 1022 y~Tipqn~~--fe~g~~Y~V~fdY---q~~~~~~y~~v~G~~~~~~~~~~~~~l~~a~g-~t~~~~~~~t~~~~G~~w~G 1095 (1376)
T 2zxq_A 1022 YQTIPQNVK--FEAGAKYKVSFDY---QSGSDDIYAIAVGQGEYSAGSVKLTNLKKALG-ETGKAEFELTGGVNGDSWFG 1095 (1376)
T ss_dssp EEECTTTSC--CCBTCEEEEEEEE---EESSTTSEEEEEEESSCCTTSSEEEECCCEEE-EEEEEEEEEEBCTTSCEEEE
T ss_pred EEeccccee--cCCCcEEEEEEEe---ecCCCCcEEEEEecCccccCcccceecccccC-cccEEEEEEEecCCCCeeEe
Confidence 226666 7899999999994 333333222211122211 222222222 112 33 46666664 5789999
Q ss_pred EEeCcccccCCCCc---------cccccceeeeeeccCc
Q 003457 770 FISYNINQTKDGVF---------CGPLIDDVVLRASHGF 799 (818)
Q Consensus 770 f~~~~~~~~~~~~~---------~gp~~d~v~~~~~~~~ 799 (818)
|++++-..|..++- -=-+|||..|..+...
T Consensus 1096 i~~~~~~~d~~g~~g~~~~f~g~~dfvlDnl~i~~~~~~ 1134 (1376)
T 2zxq_A 1096 IYSTATAPDLQGSTGNAQDFGGYKDFVLDNLKIERIESQ 1134 (1376)
T ss_dssp EEECSCCCCCTTCCTTHHHHSCTTCEEEEEEEEEECCCC
T ss_pred EEecCccccccCCCccccccccccceEEeeeEEEecccc
Confidence 99954432221100 1148999999988754
No 280
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.53 E-value=55 Score=30.83 Aligned_cols=16 Identities=13% Similarity=0.017 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHHcC
Q 003457 316 NDITFVGVLSACCHAG 331 (818)
Q Consensus 316 d~~t~~~ll~a~~~~g 331 (818)
+...-...+.++.+.+
T Consensus 156 ~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 156 DGWVRQSAADALGEIG 171 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 3333333444444444
No 281
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae}
Probab=74.74 E-value=38 Score=41.19 Aligned_cols=148 Identities=16% Similarity=0.209 Sum_probs=81.0
Q ss_pred CCCCCcCCCCCCCCCcceeecCCCC-----------CCCCCCCCcEEeceeeeecCCceeccCCCeeEEecC---Cccc-
Q 003457 634 NGGFEFGPDFLSNSTEGVLLESAPS-----------PIQSALQQWSVIGTVKYIDSKHFYVPKGNAAIEIVS---VSAG- 698 (818)
Q Consensus 634 ng~fe~~p~~~~~~~~~~~~~~~~~-----------~~~~~~~~w~~~~~v~~i~~~~~~~~~g~~~~~l~~---~~~~- 698 (818)
--+||.-+ ..-++||+|+.-- -.+.+--||-. +.|+ -|=+|..++--.+ +...
T Consensus 1195 ~qDFE~V~----QG~~PFV~G~~~Gv~D~RTHLSe~h~PYTQ~GWng----k~id----DVldG~wSLK~~g~~~~~glv 1262 (1531)
T 3ecq_A 1195 KQDFENVA----QGIFPFVVGGVEGVEDNRTHLSEKHDPYTQRGWNG----KKVD----DVIEGNWSLKTNGLVSRRNLV 1262 (1531)
T ss_dssp EECSTTCS----STTTTEEECSTTSSBSCSEEEEECCTTTTSTTGGG----CCSC----SCSSTTEEEEEESCCSCCEEE
T ss_pred eeccccCC----CCccceEECCCCCcCCcccchhhcCCCccccccCC----cccc----ccccceeeEEeccccccCceE
Confidence 45788743 4556778776310 12344456732 2233 2347888887754 2222
Q ss_pred ----eeeeeccccCCCeEEEEEecCcccCccccceEEEEeeCCc--------ceeeEEEecc-----cCCceeeeEEEEe
Q 003457 699 ----IQTATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSL--------VQNFTVQSLG-----TGSVIKHSVTFKA 761 (818)
Q Consensus 699 ----~q~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-----~~~~~~~~~~f~a 761 (818)
-|+|. -.||.+|+|+|. .-.+.++.=.+-+=.+.. ...++...+- +..=.++.+.|++
T Consensus 1263 yrTiPqn~r--FEpG~~Y~VsFD---Yqags~g~Ya~v~G~g~~~~~~~~~~~~~l~~~~l~~t~~~~~~~~~~~~~vtg 1337 (1531)
T 3ecq_A 1263 YQTIPQNFR--FEAGKTYRVTFE---YEAGSDNTYAFVVGKGEFQSGRRGTQASNLEMHELPNTWTDSKKAKKATFLVTG 1337 (1531)
T ss_dssp EEECTTTCC--CCTTCEEEEEEE---EEESSTTSEEEEEEESSTTSSSTTCSGGGSEEEECCCSSTTCSSCEEEEEEEEC
T ss_pred EEecccccc--cCCCCEEEEEEE---eecCCCCceEEEEccccccccccccccceeeeccccccccCCCCccEEEEEEEe
Confidence 26666 789999999999 443333332222222221 2244432222 2222334555654
Q ss_pred cc-ceeeEEEEeCcccccCCCCccc----------cccceeeeeeccCc
Q 003457 762 GS-GSTPISFISYNINQTKDGVFCG----------PLIDDVVLRASHGF 799 (818)
Q Consensus 762 ~~-~~~~~~f~~~~~~~~~~~~~~g----------p~~d~v~~~~~~~~ 799 (818)
.. ..|.+-|+|++-..|..+. -| =+|||..|+.+...
T Consensus 1338 ~~~GqtW~Giyst~~~~~~~g~-~g~~~~f~gy~dfvlDnl~i~~v~~t 1385 (1531)
T 3ecq_A 1338 AETGDTWVGIYSTGNASNTRGD-SGGNANFRGYNDFMMDNLQIEEITLT 1385 (1531)
T ss_dssp CTTSCEEEEEEECSCCCCCTTC-CHHHHHHHTTTEEEEEEEEEEEECCC
T ss_pred cCCCceEEEEEecCcccCCCCC-CccccccCCccceEecceEEEEecch
Confidence 43 6899999997654333210 12 28999999988764
No 282
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.87 E-value=1.1e+02 Score=32.43 Aligned_cols=90 Identities=14% Similarity=-0.008 Sum_probs=51.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCcHHHHHH--
Q 003457 186 TMISGYAQSFRANEALMLFDQMLMEGFEPN-----SVTLASVLSACAQSGCLELGEKVHVFVKMR--GFEMGAILGTA-- 256 (818)
Q Consensus 186 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~--g~~~~~~~~~~-- 256 (818)
-|+..|...|++.+|.+++.++.+.=-..| ...+..-+..|...+++.++...+...... .+.+++.+...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 467788888888888888888765311112 123444556677778888888777776543 12233332221
Q ss_pred --HHHHHH-hCCCHHHHHHHHh
Q 003457 257 --LVHMYT-KNGALAKAKALFD 275 (818)
Q Consensus 257 --Li~~~~-~~g~~~~A~~~f~ 275 (818)
-..++. ..+++..|...|-
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ 205 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFY 205 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHH
Confidence 122334 4556666555543
No 283
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=70.21 E-value=70 Score=29.75 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCC
Q 003457 250 GAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGH 297 (818)
Q Consensus 250 ~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~ 297 (818)
+..+....+.++.+.++.+....+.+.+..++...-...+.++.+.++
T Consensus 89 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 89 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 333444444444444433222233333333444333333444444433
No 284
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=69.79 E-value=22 Score=29.82 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003457 297 HAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVD 361 (818)
Q Consensus 297 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~ 361 (818)
+.-+..+-++.+....+-|++......+++|.+.+++..|.++++.++.+ ......+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 44566777777777788899999999999999999999999999998876 3333456666653
No 285
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=69.62 E-value=1.6e+02 Score=33.51 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 003457 196 RANEALMLFDQMLMEGFEPNSVTLASVLSACA----QSGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAK 271 (818)
Q Consensus 196 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~----~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 271 (818)
+.+.|...|....+.. ..+......+-.... ..+...++...+...... ..+.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 5666666666665432 223322222222222 222234444444443332 222222333333344556677776
Q ss_pred HHHhhCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003457 272 ALFDSMPERN---IATWNAMISGLASHGHAEEALDLFRKLEK 310 (818)
Q Consensus 272 ~~f~~m~~~d---~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 310 (818)
+.|+.|.... ....-=+..++.+.|+.++|..+|+++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 6666665421 11122234455566666666666666653
No 286
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=67.63 E-value=1.2e+02 Score=34.67 Aligned_cols=16 Identities=6% Similarity=-0.080 Sum_probs=11.6
Q ss_pred HHhhchHHHHHHHHHH
Q 003457 430 AEAESMKMQLEILLVQ 445 (818)
Q Consensus 430 ~~~G~~~eA~~l~~~~ 445 (818)
.+.|+|++|++.++..
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 5777888887766665
No 287
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=62.87 E-value=97 Score=28.71 Aligned_cols=153 Identities=12% Similarity=0.052 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 003457 149 DLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQ 228 (818)
Q Consensus 149 ~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~ 228 (818)
+..+....+..+.+.++-+....+.+.+..++...-...+.++.+.+..+ +...+.++.. .++...-...+.++.+
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 33333334444444444333444444444455554444555555555443 3344444432 3566666666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 003457 229 SGCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKL 308 (818)
Q Consensus 229 ~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m 308 (818)
.++.+....+. .+.. .++..+....+.++.+.++.+....+.+.+.+++...-...+.++.+.+. +++...+.++
T Consensus 103 ~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~ 177 (201)
T 3ltj_A 103 IGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKL 177 (201)
T ss_dssp HCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred hCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 66644333333 3332 45666666666776666654433344444445565555556666666655 3355555555
Q ss_pred HH
Q 003457 309 EK 310 (818)
Q Consensus 309 ~~ 310 (818)
.+
T Consensus 178 l~ 179 (201)
T 3ltj_A 178 AE 179 (201)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 288
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.53 E-value=56 Score=27.23 Aligned_cols=79 Identities=14% Similarity=0.118 Sum_probs=58.7
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 230 GCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLE 309 (818)
Q Consensus 230 g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 309 (818)
...++|..|-+.+...+. ...+--.-+..+...|+|++|..+.+.+.-||.+.|.+|. -.+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 346778777777777653 3333333345678899999999999999999999997764 457788888888887777
Q ss_pred HcC
Q 003457 310 KEQ 312 (818)
Q Consensus 310 ~~g 312 (818)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 665
No 289
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.51 E-value=68 Score=26.80 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=58.1
Q ss_pred CChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 230 GCLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLE 309 (818)
Q Consensus 230 g~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 309 (818)
...++|..|-+.+...+. ...+--.-+..+...|+|++|..+.+.+.-||.+.|.+|. -.+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALC--EYRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHH--HHHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHH
Confidence 356778777777777653 3333333345678899999999999999999999997765 356788888887777776
Q ss_pred HcC
Q 003457 310 KEQ 312 (818)
Q Consensus 310 ~~g 312 (818)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 654
No 290
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=59.93 E-value=1.1e+02 Score=28.50 Aligned_cols=151 Identities=12% Similarity=0.047 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 003457 151 HVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSG 230 (818)
Q Consensus 151 ~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g 230 (818)
.+-...+..+.+.++.+....+.+.+..++...-...+.++.+.++. ++...+.++.. .++...-...+.++.+.+
T Consensus 34 ~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 34 YVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 33333333444444433333333333334444433444444444432 22333333322 344444455555555555
Q ss_pred ChhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 003457 231 CLELGEKVHVFVKMRGFEMGAILGTALVHMYTKNGALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEK 310 (818)
Q Consensus 231 ~~~~A~~i~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 310 (818)
+.+.. ..+..+.+ .++..+....+.++.+.++.+....+.+.+.+++...-...+.++.+.+. .++...+.++.+
T Consensus 110 ~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 110 DERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp CGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 53332 22222322 34555555555666555554333333344444555555555666666655 345555555554
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.69 E-value=49 Score=39.91 Aligned_cols=91 Identities=9% Similarity=-0.095 Sum_probs=63.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC--CC------------------
Q 003457 323 VLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMV--WK------------------ 382 (818)
Q Consensus 323 ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~--~~------------------ 382 (818)
++..|...+.++-+.++... ++.+...-..+.++|..+|++++|.+.|+++. ..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~------~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW------LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 56677778888766654322 45555555678888999999999999999873 10
Q ss_pred --C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCc
Q 003457 383 --P---DVVMWGALLAACKNHGNIEVAERVVKEIIAL-EPNNH 419 (818)
Q Consensus 383 --p---d~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~-~P~~~ 419 (818)
+ ....|..++..+.+.+.++.++++.+.+++. .+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~ 932 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDE 932 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCH
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCc
Confidence 1 1236677777788888888888888888873 34443
No 292
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=58.50 E-value=41 Score=29.80 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 003457 297 HAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAGFIDVGRQIFGSMKRVYGIEPKIEHYGCMVD 361 (818)
Q Consensus 297 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~ 361 (818)
+.-+..+-++.+....+-|++......+++|.+.+|+..|.++++.++.+ ..+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34456667777777788999999999999999999999999999998877 4444556766663
No 293
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.49 E-value=44 Score=36.93 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHcCCC----CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 003457 353 IEHYGCMVDLLGRCGKVLEAEELIKRMVWK----PD---VVMWGALLAACKNHGNIEVAERVVKEIIALEPNN 418 (818)
Q Consensus 353 ~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~----pd---~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~ 418 (818)
...++.+++.|...+.++.|.++..+.... ++ ...+..++..+.-.+++.+|.+.+..+++.-|.+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 345666777777777777777777766322 11 1122334445566777777777777776665543
No 294
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=57.72 E-value=73 Score=26.62 Aligned_cols=85 Identities=12% Similarity=0.062 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003457 130 SLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLM 209 (818)
Q Consensus 130 ~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 209 (818)
..++|..+-+-+...+. ...+-..-+..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++...+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555544432 11121222234456777777777777766667777766543 345666666666655555
Q ss_pred cCCCCCHHHH
Q 003457 210 EGFEPNSVTL 219 (818)
Q Consensus 210 ~g~~pd~~t~ 219 (818)
.| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 44 3333333
No 295
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.76 E-value=62 Score=30.83 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHh--cCCCCcchHHHHHHHHHHhhchHHHHHHHHH
Q 003457 401 IEVAERVVKEIIA--LEPNNHGVYVVLSNMYAEAESMKMQLEILLV 444 (818)
Q Consensus 401 ~~~A~~~~~~~~~--~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~ 444 (818)
..++.++|..+.. ++-..+..|...+..|...|++++|.++++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555443 3344445555555555555555555555443
No 296
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.76 E-value=55 Score=35.31 Aligned_cols=57 Identities=12% Similarity=-0.009 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhcC------CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003457 152 VVNCLVRCYSVSSDLNNARQVFDEIRNR------TLNVWTTMISGYAQSFRANEALMLFDQML 208 (818)
Q Consensus 152 ~~~~Li~~y~~~g~~~~A~~l~~~m~~~------d~~~~~~Li~~~~~~g~~~~A~~l~~~m~ 208 (818)
+...+...|.+.|++++|.+.|.++... -...+-.+++.+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4556777777888888888877777642 23456667777777777777777777764
No 297
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=54.59 E-value=97 Score=31.78 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=32.6
Q ss_pred HHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 003457 376 IKRMVWKPD--VVMWGALLAACKNHGNIEVAERVVKEIIALEPN 417 (818)
Q Consensus 376 ~~~m~~~pd--~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~ 417 (818)
|-.....|. ..++..-+....+.+++.-|..+.++++++.|.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 333345553 456677777889999999999999999999985
No 298
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=54.12 E-value=51 Score=27.61 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 003457 199 EALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 199 ~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~ 245 (818)
+..+-++.+....+.|+.......+++|.+.+++..|.++++-+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555555566777777777777777777777777777766654
No 299
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=54.04 E-value=71 Score=26.65 Aligned_cols=85 Identities=8% Similarity=-0.031 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003457 130 SLNCCKQIHTHVSKSGLDLDLHVVNCLVRCYSVSSDLNNARQVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLM 209 (818)
Q Consensus 130 ~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~y~~~g~~~~A~~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~ 209 (818)
..++|..+-+-+...+. ...+-..-+..+...|++++|..+.+.+.-||...|-+|.. .+.|..+++...+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 44555555555544432 11111222233456677777777666666666666666543 355666666666656655
Q ss_pred cCCCCCHHHH
Q 003457 210 EGFEPNSVTL 219 (818)
Q Consensus 210 ~g~~pd~~t~ 219 (818)
.| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 54 3333333
No 300
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.44 E-value=60 Score=35.01 Aligned_cols=94 Identities=6% Similarity=-0.114 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhCCC------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHH--H
Q 003457 253 LGTALVHMYTKNGALAKAKALFDSMPE------RNIATWNAMISGLASHGHAEEALDLFRKLEK---EQIVPNDITF--V 321 (818)
Q Consensus 253 ~~~~Li~~~~~~g~~~~A~~~f~~m~~------~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~t~--~ 321 (818)
....+.+.|.+.|++++|.+.|.++.+ .-...+..++..+...+++..+...++++.. .+..|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445577777777777777777776653 2344566667777777777777777776643 2222222111 1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 003457 322 GVLSACCHAGFIDVGRQIFGSMKRV 346 (818)
Q Consensus 322 ~ll~a~~~~g~~~~A~~~~~~m~~~ 346 (818)
.-+..+...+++..|.+.|-.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122233456677777777666655
No 301
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.85 E-value=1.9e+02 Score=32.94 Aligned_cols=21 Identities=10% Similarity=-0.173 Sum_probs=16.5
Q ss_pred HHcCCHHHHHHHHHHcCCCCC
Q 003457 364 GRCGKVLEAEELIKRMVWKPD 384 (818)
Q Consensus 364 ~~~g~~~~A~~~~~~m~~~pd 384 (818)
...|++++|++.++++..-|.
T Consensus 549 ~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHTTCHHHHHHHHHHTSCSCC
T ss_pred HHcCCHHHHHHHHHhCCCCCC
Confidence 678889999988888865553
No 302
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=46.60 E-value=2.2e+02 Score=27.86 Aligned_cols=242 Identities=10% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHcC
Q 003457 171 QVFDEIRNRTLNVWTTMISGYAQSFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGC----LELGEKVHVFVKMRG 246 (818)
Q Consensus 171 ~l~~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~----~~~A~~i~~~~~~~g 246 (818)
.++..+..++...-..-+.++.+.+ ..++...+.++.+ .++...-...+.++.+.+. ......++..+...
T Consensus 27 ~L~~~L~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~- 101 (280)
T 1oyz_A 27 ELFRLLDDHNSLKRISSARVLQLRG-GQDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN- 101 (280)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHccC-CchHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc-
Q ss_pred CCCcHHHHHHHHHHHHhCC------CHHHHHHHHhhCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 003457 247 FEMGAILGTALVHMYTKNG------ALAKAKALFDSMPERNIATWNAMISGLASHGHAEEALDLFRKLEKEQIVPNDITF 320 (818)
Q Consensus 247 ~~~~~~~~~~Li~~~~~~g------~~~~A~~~f~~m~~~d~~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 320 (818)
.++..+....+.++.+.+ ...-...+...+..++...-...+.++.+.++ .++...+.++.+ .++...-
T Consensus 102 -d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr 176 (280)
T 1oyz_A 102 -DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVIND-KATIPLLINLLK---DPNGDVR 176 (280)
T ss_dssp -CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHH
T ss_pred -CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHc---CCCHHHH
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003457 321 VGVLSACCHAG-FIDVGRQIFGSMKRVYGIEPKIEHYGCMVDLLGRCGKVLEAEELIKRMVWKPDVVMWGALLAACKNHG 399 (818)
Q Consensus 321 ~~ll~a~~~~g-~~~~A~~~~~~m~~~~g~~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g 399 (818)
...+.++.+.+ +...+...+..+.+. ++..+-...+.++.+.|+.+..-.+.+.+. .++ .-...+.++.+.|
T Consensus 177 ~~a~~aL~~~~~~~~~~~~~L~~~l~d----~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~-d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 177 NWAAFAININKYDNSDIRDCFVEMLQD----KNEEVRIEAIIGLSYRKDKRVLSVLCDELK-KNT--VYDDIIEAAGELG 249 (280)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHTTCGGGHHHHHHHHT-SSS--CCHHHHHHHHHHC
T ss_pred HHHHHHHHhhccCcHHHHHHHHHHhcC----CCHHHHHHHHHHHHHhCCHhhHHHHHHHhc-Ccc--HHHHHHHHHHhcC
Q ss_pred CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Q 003457 400 NIEVAERVVKEIIALEPNNHGVYVVLSNMYAE 431 (818)
Q Consensus 400 ~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~ 431 (818)
+ .++...+.++++..++ .+.....+..+.+
T Consensus 250 ~-~~~~~~L~~~l~~~~~-~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 250 D-KTLLPVLDTMLYKFDD-NEIITSAIDKLKR 279 (280)
T ss_dssp C-GGGHHHHHHHHTTSSC-CHHHHHHHHHHTC
T ss_pred c-hhhhHHHHHHHhcCCC-cHHHHHHHHHhhc
No 303
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.53 E-value=29 Score=36.51 Aligned_cols=64 Identities=22% Similarity=0.310 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCH
Q 003457 254 GTALVHMYTKNGALAKAKALFDSMPERN---IATWNAMISGLASHGH--AEEALDLFRKLEKEQIVPND 317 (818)
Q Consensus 254 ~~~Li~~~~~~g~~~~A~~~f~~m~~~d---~~~~~~Li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~ 317 (818)
...++.-|...++.++|.+.++++..|. ......+..++-+.++ .+....++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 3567777888889999999998887653 2233344444444333 34566777777776655433
No 304
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
Probab=45.17 E-value=1.7e+02 Score=26.49 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=40.8
Q ss_pred ccCCCeEEEEEecCcccCccccceEEEEeeCCcc--eeeEEEecccCCcee---ee---EEEEeccceeeEEEEeCcccc
Q 003457 706 LTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLV--QNFTVQSLGTGSVIK---HS---VTFKAGSGSTPISFISYNINQ 777 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~---~~f~a~~~~~~~~f~~~~~~~ 777 (818)
+..--.|+|+|.++.... ...+++++.+.. ......+..+.||++ .+ +.+.|-....+|+|. +.
T Consensus 75 v~~aG~Y~i~~rvas~~~----g~~i~l~vdg~~~~~~~g~~~vp~tGW~~w~t~t~~~v~L~aG~htL~l~~~--g~-- 146 (160)
T 2cdp_A 75 VAQAGNYTISYQAGSGVT----GGSIEFLVNENGSWASKTVTAVPNQGWDNFQPLNGGSVYLSAGTHQVRLHGA--GS-- 146 (160)
T ss_dssp ESSCEEEEEEEEEEBSSS----SCEEEEEEECSSSEEEEEEEECCBSCTTCCEEEEEEEEEECSEEEEEEEEEC--SS--
T ss_pred cCCCcEEEEEEEEEcCCC----CceEEEEECCCCCceeeeEEEcCCCCCceeEEeeeeEEEeCCCeEEEEEEEE--CC--
Confidence 334678999999865442 246777776541 121111222334554 22 333333344455443 21
Q ss_pred cCCCCccccccceeeeee
Q 003457 778 TKDGVFCGPLIDDVVLRA 795 (818)
Q Consensus 778 ~~~~~~~gp~~d~v~~~~ 795 (818)
+. |+-=||-+.+.+
T Consensus 147 -~~---~~~Nld~~~f~p 160 (160)
T 2cdp_A 147 -NN---WQWNLDKFTLSN 160 (160)
T ss_dssp -SS---BCCEEEEEEEEC
T ss_pred -CC---CcEEEEEEEEEC
Confidence 13 777899888763
No 305
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=40.96 E-value=95 Score=27.51 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCcHHHHHHHH
Q 003457 199 EALMLFDQMLMEGFEPNSVTLASVLSACAQSGCLELGEKVHVFVKMRGFEMGAILGTALV 258 (818)
Q Consensus 199 ~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~~~~A~~i~~~~~~~g~~~~~~~~~~Li 258 (818)
+..+-++.+....+.|+.......+++|.+.+++..|.++++-+..+- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344555555566677888888888888888888888888888777653 23344454444
No 306
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=40.05 E-value=2.5e+02 Score=26.63 Aligned_cols=68 Identities=13% Similarity=0.014 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 003457 82 MWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPN-QHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDL 150 (818)
Q Consensus 82 ~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 150 (818)
.|-..++.+ ..+...++.++|..|...|+--. ...|......+...|++.+|.++|+.-++.+-+|-.
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 344444443 23446688888888888776544 346777777777888888888888888887766643
No 307
>2vzs_A CSXA, EXO-beta-D-glucosaminidase; hydrolase, GH2, glucosamine, glycoside hydrolase; HET: GCS; 1.85A {Amycolatopsis orientalis} SCOP: b.1.4.1 b.1.4.1 b.1.4.1 b.18.1.5 c.1.8.3 PDB: 2x05_A* 2x09_A* 2vzo_A 2vzt_A* 2vzv_A* 2vzu_A*
Probab=37.05 E-value=7.2 Score=47.69 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred ccCCCeEEEEEecCcccCccccceEEEEeeCCcc--eeeEEEecc-cCCceee--eEEEEeccceeeEEEEeCcccccCC
Q 003457 706 LTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSLV--QNFTVQSLG-TGSVIKH--SVTFKAGSGSTPISFISYNINQTKD 780 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~--~~~f~a~~~~~~~~f~~~~~~~~~~ 780 (818)
+.....|+|+|..+. +-.+...+.++|.+.. +.+.+..++ -..|.+. .+..+|..++.+|.+ ++. .
T Consensus 952 v~~aG~Y~l~iryan---~~~~~r~~~l~VNG~~~~~~v~~~~Tg~W~~w~~~~~~v~L~aG~NtI~~~~--~~~----~ 1022 (1032)
T 2vzs_A 952 VPSAGTYDVVVRYAN---GTTTSRPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVTLAAGVNKIKAVA--TTA----N 1022 (1032)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCeEEEEEEEEEc---CCCCCeeEEEEECCeEeeeEEEecCCCCCCccEEEEEEEEECCCceEEEEEE--cCC----c
Confidence 344789999998543 2233456778887755 456654443 1235554 345555555555543 221 2
Q ss_pred CCccccccceeee
Q 003457 781 GVFCGPLIDDVVL 793 (818)
Q Consensus 781 ~~~~gp~~d~v~~ 793 (818)
|||-||.+.|
T Consensus 1023 ---g~~niD~i~v 1032 (1032)
T 2vzs_A 1023 ---GGPNVDKITL 1032 (1032)
T ss_dssp -------------
T ss_pred ---CceEEEEEEC
Confidence 8899998765
No 308
>3esm_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.65A {Nocardia farcinica}
Probab=36.16 E-value=43 Score=30.33 Aligned_cols=60 Identities=8% Similarity=0.054 Sum_probs=36.9
Q ss_pred ccCCCeEEEEEecCcccCcccc--ceEEEEeeCCcceeeEEEecccCCceeeeEEEEeccceeeEEEEe
Q 003457 706 LTEGSAYNLDFTLGDAKDACEG--MFVVRVQAGSLVQNFTVQSLGTGSVIKHSVTFKAGSGSTPISFIS 772 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~~~~~~~~f~~ 772 (818)
..+|++|.+||. .+..|.+ -..|+|.++ +....+..-.-||.-.. .=.+++..++|++.-
T Consensus 12 a~~G~~~~~tfr---VP~e~d~a~Ttkv~V~lP---gv~~v~~~p~pGWt~~v-~k~~t~~v~~VtWta 73 (152)
T 3esm_A 12 AAQGGYSVVTFR---VPTESETAATTAMTVTLP---NVRSARTEPMPGWTARV-DRNDKSEAVSVTWTA 73 (152)
T ss_dssp CBTTCCEEEEEE---EECCCSSCCEEEEEEEEE---EESEEEECCCTTEEEEE-EECTTSCEEEEEEEE
T ss_pred cCCCccEEEEEE---ecCCCCCCCceEEEEEcC---CccccceecCCCCEEEE-EeCCCCCEEEEEEEc
Confidence 678999999999 6677765 446777777 33333344466776432 112244555666554
No 309
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=35.43 E-value=1.3e+02 Score=27.23 Aligned_cols=42 Identities=5% Similarity=0.104 Sum_probs=24.2
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHHHhhchHHHHHHHHHH
Q 003457 404 AERVVKEIIA--LEPNNHGVYVVLSNMYAEAESMKMQLEILLVQ 445 (818)
Q Consensus 404 A~~~~~~~~~--~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~~ 445 (818)
+.++|+.+.. ++-..+..|...+..+...|++++|.++++..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 127 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRG 127 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555554 34445556666666666666666666655544
No 310
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=32.41 E-value=1.8e+02 Score=26.59 Aligned_cols=73 Identities=11% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCcchHHHHHHHHHHhhchHHHHHHHHH
Q 003457 369 VLEAEELIKRM-VWKPDVVMWGALLAACKNHGNIEVAERVVKEIIA--LEPNNHGVYVVLSNMYAEAESMKMQLEILLV 444 (818)
Q Consensus 369 ~~~A~~~~~~m-~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~--~~P~~~~~y~~L~~~l~~~G~~~eA~~l~~~ 444 (818)
++++.+.|..- ..+.|......-+.--...++ +.++|+.+.. ++-..+..|...+..|...|++++|.++++.
T Consensus 46 LErc~~~f~~~~~YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~ 121 (164)
T 2wvi_A 46 LERAVEALQGEKRYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQE 121 (164)
T ss_dssp HHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
No 311
>2bvb_A Micronemal protein 1; microneme, invasion, adhesion; NMR {Toxoplasma gondii} PDB: 2k2s_A
Probab=31.52 E-value=1.6e+02 Score=24.55 Aligned_cols=47 Identities=26% Similarity=0.213 Sum_probs=33.4
Q ss_pred ccCCCeEEEEEecCcccCccccceEEEEeeCCc--------ceeeEEEecccCCceeeeEEEEec
Q 003457 706 LTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSL--------VQNFTVQSLGTGSVIKHSVTFKAG 762 (818)
Q Consensus 706 ~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~f~a~ 762 (818)
...|+.-.|||+ +..|.|+||.- -.-+.|||..+++++...+.=.|.
T Consensus 13 l~~gqql~~t~~----------s~~l~v~vgsch~l~~nf~d~~l~f~t~s~s~~d~ve~~~~ag 67 (137)
T 2bvb_A 13 LEEGQQLTLTFI----------STKLDVAVGSCHSLVANFLDGFLKFQTGSNSAFDVVEVEEPAG 67 (137)
T ss_dssp ECSSCEEEEEEE----------CSEEEEECTTTCEEEEETTTTEEEEESSSSSSCEEECCCCEEE
T ss_pred HhcCceEEEEEe----------cceeeEEecchhheeehhccceEEeecCCCCccceEEeccCCC
Confidence 578999999999 34677777762 245677888888887765544443
No 312
>4d8m_A Pesticidal crystal protein CRY5BA; glycolipid binding, lipid binding protein; 2.30A {Bacillus thuringiensis}
Probab=30.64 E-value=1.6e+02 Score=32.89 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=33.6
Q ss_pred CCCeeEEecCCccceeeeeccccCCCeEEEEEecCcccCccccceEEEEeeCCc
Q 003457 685 KGNAAIEIVSVSAGIQTATTMLTEGSAYNLDFTLGDAKDACEGMFVVRVQAGSL 738 (818)
Q Consensus 685 ~g~~~~~l~~~~~~~q~~~~~~~~g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~ 738 (818)
.|+.||+|..+....-.+. ..-.+.|+|.+-.|+..++ ...++|..++.
T Consensus 475 nga~av~l~~~q~l~~~i~--n~~~~~Y~VR~RYAS~~d~---~~~~~~~~~~~ 523 (587)
T 4d8m_A 475 NGNNAVKLSNSQSVGIQIT--NQTKQKYEIRCRYASKGDN---NVYFNVDLSEN 523 (587)
T ss_dssp GTEEEEEECTTCEEEEEEE--ECSCEEEEEEEEEEESSCE---EEEEEECCSSS
T ss_pred cccceeeCCCCCEEEEEEE--ccccceEEEEEEEecCCCc---eEEEEEcCCCc
Confidence 5899999977665556665 4557899999997653322 33466666663
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.95 E-value=2.2e+02 Score=24.70 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCH---HHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCC
Q 003457 153 VNCLVRCYSVSSDLNNARQVFDEIRNRTL---NVWTTMISGYAQSFR--ANEALMLFDQMLMEGFE 213 (818)
Q Consensus 153 ~~~Li~~y~~~g~~~~A~~l~~~m~~~d~---~~~~~Li~~~~~~g~--~~~A~~l~~~m~~~g~~ 213 (818)
...++.=|...|+.++|.+.++++..+.. .....+..++-+.++ .+.+..++..+.+.|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34567777778888888888888865522 233333344433322 34566777777666644
No 314
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.91 E-value=1.6e+02 Score=28.64 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHc
Q 003457 350 EPKIEHYGCMVDLLGRCGKVLEAEELIKRM 379 (818)
Q Consensus 350 ~p~~~~~~~Li~~~~~~g~~~~A~~~~~~m 379 (818)
..+.......+..+.+.|+.++|.++|=+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 445555666667778888888888877554
No 315
>2cov_D Beta-1,3-xylanase; carbohydrate-binding module, family 31 CBM, beta-1,3-xylanas binding protein; 1.25A {Alcaligenes SP}
Probab=28.28 E-value=67 Score=25.79 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=20.4
Q ss_pred CccceeeeeccccCCCeEEEEEecCccc
Q 003457 695 VSAGIQTATTMLTEGSAYNLDFTLGDAK 722 (818)
Q Consensus 695 ~~~~~q~~~~~~~~g~~y~~tf~~~~~~ 722 (818)
+++-.-+|+ -+-|++|.+||-+.+..
T Consensus 52 ~g~f~r~F~--a~LGqtY~i~FKVeD~~ 77 (104)
T 2cov_D 52 NGAFRKTFN--AVLGQDYKLTFKVEDRY 77 (104)
T ss_dssp TTEEEEEEE--CCTTCEEEEEEEEEETT
T ss_pred CCeeeeeec--hhcCcceeEEEEEeccc
Confidence 445567898 68999999999986643
No 316
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.94 E-value=1.2e+02 Score=26.46 Aligned_cols=64 Identities=9% Similarity=0.069 Sum_probs=36.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHcCCC
Q 003457 83 WNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRS--LNCCKQIHTHVSKSGLD 147 (818)
Q Consensus 83 yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~--~~~A~~~~~~m~~~g~~ 147 (818)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+....++..+.+.|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456778888888888888888887532111 22233444444444322 34555666666665544
No 317
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=26.94 E-value=1.3e+02 Score=33.00 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=42.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHHHHH
Q 003457 388 WGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQLEI 441 (818)
Q Consensus 388 ~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA~~l 441 (818)
+..|++.......++.|..+|+++..+.|++-..|+.|+.+....|+.-+|.-.
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~ 208 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY 208 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHH
Confidence 344555555666788999999999999999999999999888888887777763
No 318
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.77 E-value=2.8e+02 Score=30.48 Aligned_cols=64 Identities=5% Similarity=-0.055 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHH-HHHHHHHHhcCChhHHHHHHHHHHHc
Q 003457 182 NVWTTMISGYAQSFRANEALMLFDQMLMEGF-EPNS--VTL-ASVLSACAQSGCLELGEKVHVFVKMR 245 (818)
Q Consensus 182 ~~~~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~--~t~-~~ll~~~~~~g~~~~A~~i~~~~~~~ 245 (818)
..+|.+++.|...+.+++|..+..+..--.. .++. .+| ..+.+.+.-.+++.+|.+.+..+.+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3688888888888888888888887631100 1111 122 23445566677777777777776654
No 319
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.91 E-value=2.1e+02 Score=27.92 Aligned_cols=87 Identities=8% Similarity=0.050 Sum_probs=41.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003457 86 LIRAQASSLNPDKAIFLYMNMRRT--GFAP----NQHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDLHVVNCLVRC 159 (818)
Q Consensus 86 Li~~~~~~g~~~~Al~lf~~m~~~--g~~p----d~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~Li~~ 159 (818)
-++.+....++++|++++++..+. +.++ +.......++.-.....-.-+..+.+.+ .. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 367778888888888888776542 2221 1111122222222222222233333333 22 2334444445556
Q ss_pred HHhCCChHHHHHHHHH
Q 003457 160 YSVSSDLNNARQVFDE 175 (818)
Q Consensus 160 y~~~g~~~~A~~l~~~ 175 (818)
+.+.|+-++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 6666666666666544
No 320
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.69 E-value=1.7e+02 Score=26.31 Aligned_cols=61 Identities=15% Similarity=0.241 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHhhcCCH---HHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCC
Q 003457 153 VNCLVRCYSVSSDLNNARQVFDEIRNRTL---NVWTTMISGYAQSFR--ANEALMLFDQMLMEGFE 213 (818)
Q Consensus 153 ~~~Li~~y~~~g~~~~A~~l~~~m~~~d~---~~~~~Li~~~~~~g~--~~~A~~l~~~m~~~g~~ 213 (818)
...++.=|...++.++|.+.++++..+.. .....+..++-+.++ .+.+..++..+...++-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34567777777888888888888765522 233333334433222 34566677777666543
No 321
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.24 E-value=3.5e+02 Score=25.56 Aligned_cols=64 Identities=13% Similarity=0.172 Sum_probs=40.6
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-----hhHHHHHHHHHHHcCCC
Q 003457 184 WTTMISGYAQ---SFRANEALMLFDQMLMEGFEPNSVTLASVLSACAQSGC-----LELGEKVHVFVKMRGFE 248 (818)
Q Consensus 184 ~~~Li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~~~~~~g~-----~~~A~~i~~~~~~~g~~ 248 (818)
+..+|+++.+ -.+.+.|+-.+-+|++.| .|....-..++.+....|. +..|...++.....|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445555544 478999999999999998 6665555555566555553 33444555555555643
No 322
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.24 E-value=92 Score=28.14 Aligned_cols=65 Identities=9% Similarity=0.058 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--hHHHHHHHHHHHHcCCC
Q 003457 82 MWNTLIRAQASSLNPDKAIFLYMNMRRTGFAPNQHTFTFVLKACSNVRS--LNCCKQIHTHVSKSGLD 147 (818)
Q Consensus 82 ~yn~Li~~~~~~g~~~~Al~lf~~m~~~g~~pd~~ty~~ll~~~~~~g~--~~~A~~~~~~m~~~g~~ 147 (818)
..+.++.-|...++.++|.+.++++...... .......+..++-+.++ .+.+..++..+.+.++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 3456788888888888888888887532111 22334444444444322 34455666666655544
No 323
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.73 E-value=4.2e+02 Score=31.70 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=39.2
Q ss_pred HHHHhhhhcCCCHHHHHHHHhhcCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 003457 53 LLAFCALSSSGDLSYATRLFNSIQSPNHFMWNTLIRAQASSLNPDKAIFLYMNMR 107 (818)
Q Consensus 53 Ll~~~a~~k~g~~e~A~~lf~~~~~p~~~~yn~Li~~~~~~g~~~~Al~lf~~m~ 107 (818)
++..+ ...|..+.|.++....+. +...--.+.++|...|++++|.++|++.-
T Consensus 816 l~~~L--~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKL--FLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHH--HHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHH--HHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44444 678899988887766665 44444467888999999999999998754
No 324
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.59 E-value=4.5e+02 Score=24.84 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=27.3
Q ss_pred HHHHHH---HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 003457 288 MISGLA---SHGHAEEALDLFRKLEKEQIVPNDITFVGVLSACCHAG 331 (818)
Q Consensus 288 Li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~g 331 (818)
+|+++. +-.+.+.|+-.+-+|++.| .|....-..++.+....|
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 444443 3478888888888888888 655555555555555444
No 325
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.84 E-value=4.4e+02 Score=23.66 Aligned_cols=54 Identities=4% Similarity=-0.049 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHcCCCCCH
Q 003457 97 DKAIFLYMNMRRTGFAPN-QHTFTFVLKACSNVRSLNCCKQIHTHVSKSGLDLDL 150 (818)
Q Consensus 97 ~~Al~lf~~m~~~g~~pd-~~ty~~ll~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 150 (818)
+++.++|..|...|+--. +..|......+-..|++++|.++++.-++.+-+|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 447788888888776543 346777777777888888888888888877766643
No 326
>2xfd_A VCBM60; sugar binding protein; HET: CBI; 1.19A {Escherichia coli} PDB: 2xfe_A* 2xhh_A 2xhj_A
Probab=21.76 E-value=1.3e+02 Score=25.40 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=40.8
Q ss_pred cCccccceEEEEeeCCcc-eeeEEEecccCCceeeeEEEEeccceeeEEEEeCcccccCCCCccccccceeeee
Q 003457 722 KDACEGMFVVRVQAGSLV-QNFTVQSLGTGSVIKHSVTFKAGSGSTPISFISYNINQTKDGVFCGPLIDDVVLR 794 (818)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~a~~~~~~~~f~~~~~~~~~~~~~~gp~~d~v~~~ 794 (818)
++.-++.|.+++.+++.. +.... +.+|.+|.++=.| +...+|.|.|-+..-| =+||-|.|.
T Consensus 9 ArG~~G~E~i~L~igg~~v~~Wtl----tt~~~~Ytyt~~a-~g~i~V~F~ND~~dRd-------V~vDyI~vn 70 (112)
T 2xfd_A 9 ARGVNGQESVSLQVGGTTVQTWTL----TTAMQDYTASTSL-TGEIRVAFTNDATGRD-------VQVDYIVVN 70 (112)
T ss_dssp EEESSSCCEEEEEETTEEEEEEEC----CSSCEEEEEECSC-CSEEEEEECCCCTTCC-------EEEEEEEET
T ss_pred EeccCCCceEEEEECCEEEEEEEE----eeeeeeeEEecCC-CCcEEEEEEcCCCCcc-------eEEEEEEEC
Confidence 355567799999997753 33332 4568888875333 6888999999543322 268888774
No 327
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A*
Probab=20.91 E-value=3.8e+02 Score=23.03 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=35.4
Q ss_pred CCeEEEEEecCcccCccccceEEEEeeCCc---ceeeEEEecccCCceee---eEEEE--eccceeeEEEEeCcccccCC
Q 003457 709 GSAYNLDFTLGDAKDACEGMFVVRVQAGSL---VQNFTVQSLGTGSVIKH---SVTFK--AGSGSTPISFISYNINQTKD 780 (818)
Q Consensus 709 g~~y~~tf~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~f~--a~~~~~~~~f~~~~~~~~~~ 780 (818)
...|++++.++.+.. . ..+++.++++ .+.+++.. +++|+++ +.... +-....+|+|.+-+
T Consensus 52 ~G~y~~~~rvas~~~--g--g~i~v~~~~~g~~~g~~~vp~--Tggw~~w~t~~~~v~l~~G~h~l~l~~~~g~------ 119 (131)
T 1uxz_A 52 SGSYLIEYRVASQNG--G--GSLTFEEAGGAPVHGTIAIPA--TGGWQTWTTIQHTVNLSAGSHQFGIKANAGG------ 119 (131)
T ss_dssp SEEEEEEEEEEESSC--C--EEEEEEETTSCSEEEEEEECC--CSEEEEEEEEEEEEEECSEEECEEEEEEECC------
T ss_pred CCceEEEEEEECCCC--C--cEEEEEECCCCCEeeEEEeCC--CCCCcccEEEEEEEEeCCCeEEEEEEEcCCC------
Confidence 568999999754332 1 3566677542 23444322 4455543 33332 22234455555422
Q ss_pred CCccccccceeeeee
Q 003457 781 GVFCGPLIDDVVLRA 795 (818)
Q Consensus 781 ~~~~gp~~d~v~~~~ 795 (818)
.-||-+.+.+
T Consensus 120 -----~nld~~~f~~ 129 (131)
T 1uxz_A 120 -----WNLNWIRINK 129 (131)
T ss_dssp -----CEEEEEEEEE
T ss_pred -----EEEEEEEEEE
Confidence 2377777654
No 328
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.79 E-value=2.8e+02 Score=28.22 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 003457 285 WNAMISGLASHGHAEEALDLFRKLE 309 (818)
Q Consensus 285 ~~~Li~~~~~~g~~~~A~~l~~~m~ 309 (818)
...++.-|...++.++|...++++.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 4556777777788888888888774
No 329
>1ihs_I Hirutonin; hydrolase(serine proteinase), hydrolase-hydrolase inhibitor; HET: DPN OPR; 2.00A {Homo sapiens}
Probab=20.60 E-value=33 Score=20.13 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=7.8
Q ss_pred cCCCCCcCCC
Q 003457 633 LNGGFEFGPD 642 (818)
Q Consensus 633 ~ng~fe~~p~ 642 (818)
.||+||.-|-
T Consensus 8 n~gDFe~IPE 17 (26)
T 1ihs_I 8 NDGDFEEIPE 17 (26)
T ss_pred CCCCCCcCCH
Confidence 4899998774
No 330
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=20.14 E-value=2.2e+02 Score=32.50 Aligned_cols=67 Identities=13% Similarity=0.076 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHhhchHHH
Q 003457 369 VLEAEELIKRMVWKPDVVMWGALLAACKNHGNIEVAERVVKEIIALEPNNHGVYVVLSNMYAEAESMKMQ 438 (818)
Q Consensus 369 ~~~A~~~~~~m~~~pd~~~~~~Li~a~~~~g~~~~A~~~~~~~~~~~P~~~~~y~~L~~~l~~~G~~~eA 438 (818)
.+.|.++.+.|. ...............|++..|.++.+.++..+|++.++...++++|.+.|.-.|.
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 455666677664 3334444556667899999999999999999999999999999999988865553
No 331
>5gds_I Hirunorm V; serine protease-inhibitor complex, thrombin, thrombin synthe inhibitors, antithrombotics, hirunorms; HET: CHG NAL ALC DGL NAG; 2.10A {Homo sapiens} PDB: 4thn_I*
Probab=20.04 E-value=32 Score=20.28 Aligned_cols=10 Identities=30% Similarity=0.478 Sum_probs=7.6
Q ss_pred cCCCCCcCCC
Q 003457 633 LNGGFEFGPD 642 (818)
Q Consensus 633 ~ng~fe~~p~ 642 (818)
.+|+||+-|-
T Consensus 13 n~gDfe~IPe 22 (26)
T 5gds_I 13 XGGDYEEIPA 22 (26)
T ss_pred cCCCcccCcH
Confidence 4799998763
Done!