Query 003458
Match_columns 818
No_of_seqs 297 out of 1755
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 23:48:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0020 Endoplasmic reticulum 100.0 3E-215 6E-220 1724.2 43.6 738 1-791 1-760 (785)
2 PTZ00130 heat shock protein 90 100.0 2E-177 5E-182 1541.1 68.1 751 1-785 1-766 (814)
3 PTZ00272 heat shock protein 83 100.0 9E-174 2E-178 1510.2 68.4 670 78-783 3-676 (701)
4 KOG0019 Molecular chaperone (H 100.0 4E-170 8E-175 1411.4 50.1 615 76-783 33-653 (656)
5 COG0326 HtpG Molecular chapero 100.0 3E-164 7E-169 1389.6 59.4 611 76-775 3-622 (623)
6 PRK05218 heat shock protein 90 100.0 1E-143 3E-148 1254.0 63.8 602 77-776 3-613 (613)
7 PF00183 HSP90: Hsp90 protein; 100.0 2E-137 4E-142 1181.8 39.7 500 259-786 1-506 (531)
8 PRK14083 HSP90 family protein; 100.0 7E-132 1E-136 1147.3 58.9 575 79-778 2-596 (601)
9 PF13589 HATPase_c_3: Histidin 99.6 4.2E-16 9.2E-21 150.5 7.6 101 98-225 1-104 (137)
10 TIGR00585 mutl DNA mismatch re 99.4 3E-12 6.5E-17 139.8 11.8 162 95-285 17-193 (312)
11 COG1389 DNA topoisomerase VI, 99.2 3.4E-11 7.4E-16 133.9 11.2 134 102-257 38-184 (538)
12 PRK00095 mutL DNA mismatch rep 99.1 1.8E-09 3.9E-14 128.2 19.0 154 95-277 17-181 (617)
13 PRK04184 DNA topoisomerase VI 99.1 8.6E-10 1.9E-14 127.8 13.6 152 102-277 38-203 (535)
14 COG0323 MutL DNA mismatch repa 99.1 2.8E-10 6.1E-15 135.0 9.1 149 96-276 19-182 (638)
15 TIGR01052 top6b DNA topoisomer 99.0 5E-09 1.1E-13 120.3 13.2 151 103-276 31-193 (488)
16 PRK14868 DNA topoisomerase VI 98.8 1.8E-08 3.9E-13 119.5 11.6 149 103-276 49-208 (795)
17 PRK14867 DNA topoisomerase VI 98.4 1.2E-06 2.7E-11 103.8 11.2 149 103-275 39-198 (659)
18 PRK05559 DNA topoisomerase IV 98.4 9.9E-07 2.2E-11 105.2 9.1 158 101-283 38-206 (631)
19 PF02518 HATPase_c: Histidine 98.3 8.5E-07 1.8E-11 81.4 5.3 81 102-209 7-87 (111)
20 TIGR01055 parE_Gneg DNA topois 98.2 3.9E-06 8.6E-11 100.0 8.3 159 101-284 31-202 (625)
21 smart00433 TOP2c Topoisomerase 98.1 2.6E-06 5.7E-11 101.1 6.5 153 104-283 5-170 (594)
22 KOG1979 DNA mismatch repair pr 98.1 7E-06 1.5E-10 94.3 7.9 146 97-276 24-186 (694)
23 TIGR01059 gyrB DNA gyrase, B s 98.0 1.1E-05 2.4E-10 96.8 7.9 154 102-283 32-197 (654)
24 PRK14939 gyrB DNA gyrase subun 97.9 2.8E-05 6E-10 94.2 9.9 155 102-286 39-209 (756)
25 PRK05644 gyrB DNA gyrase subun 97.9 2.7E-05 5.8E-10 93.3 9.1 147 103-276 40-198 (638)
26 KOG1978 DNA mismatch repair pr 97.9 1.4E-05 3E-10 93.7 5.6 133 92-252 12-146 (672)
27 cd00075 HATPase_c Histidine ki 97.2 0.0011 2.3E-08 57.2 7.1 86 103-215 3-92 (103)
28 KOG1977 DNA mismatch repair pr 97.1 0.0002 4.4E-09 83.8 2.0 125 101-252 22-149 (1142)
29 PRK10755 sensor protein BasS/P 97.0 0.00088 1.9E-08 73.5 5.3 101 103-255 250-350 (356)
30 TIGR02916 PEP_his_kin putative 96.8 0.0014 3.1E-08 79.0 5.8 73 104-207 583-655 (679)
31 smart00387 HATPase_c Histidine 96.8 0.0028 6.1E-08 55.5 5.7 81 103-210 8-88 (111)
32 TIGR01058 parE_Gpos DNA topois 96.7 0.0066 1.4E-07 73.1 10.3 159 103-285 37-206 (637)
33 PRK11100 sensory histidine kin 96.7 0.004 8.8E-08 70.0 7.7 102 103-254 371-472 (475)
34 PRK10549 signal transduction h 96.6 0.003 6.6E-08 71.5 6.3 62 137-208 373-434 (466)
35 TIGR02938 nifL_nitrog nitrogen 96.6 0.0037 8E-08 70.2 6.8 78 102-206 389-468 (494)
36 TIGR01386 cztS_silS_copS heavy 96.6 0.0035 7.6E-08 70.3 6.4 83 137-253 374-456 (457)
37 PRK11086 sensory histidine kin 96.5 0.0053 1.1E-07 70.7 7.7 53 103-169 436-488 (542)
38 PRK11006 phoR phosphate regulo 96.5 0.0038 8.3E-08 70.7 6.2 104 102-254 319-422 (430)
39 PRK10604 sensor protein RstB; 96.4 0.0037 8.1E-08 71.1 5.2 100 104-254 323-422 (433)
40 TIGR02966 phoR_proteo phosphat 96.2 0.0058 1.3E-07 64.9 5.4 78 104-207 233-310 (333)
41 PRK09470 cpxA two-component se 96.2 0.0073 1.6E-07 68.1 6.3 72 104-203 357-428 (461)
42 PRK10364 sensor protein ZraS; 96.2 0.0094 2E-07 68.0 6.9 51 103-169 351-401 (457)
43 PRK15347 two component system 96.1 0.0086 1.9E-07 74.0 6.7 97 104-254 517-613 (921)
44 PRK11360 sensory histidine kin 96.1 0.0091 2E-07 68.7 6.5 49 104-168 504-553 (607)
45 PRK15053 dpiB sensor histidine 96.1 0.0081 1.7E-07 69.9 6.0 104 104-255 436-539 (545)
46 PRK10815 sensor protein PhoQ; 96.1 0.0079 1.7E-07 70.0 5.9 82 138-256 398-479 (485)
47 PRK11466 hybrid sensory histid 96.1 0.011 2.5E-07 73.1 7.5 82 104-216 565-650 (914)
48 PLN03237 DNA topoisomerase 2; 96.0 0.027 5.8E-07 72.5 10.4 161 102-287 79-260 (1465)
49 PLN03128 DNA topoisomerase 2; 96.0 0.037 8.1E-07 70.4 11.3 162 103-286 55-234 (1135)
50 TIGR02956 TMAO_torS TMAO reduc 95.9 0.017 3.7E-07 71.9 8.2 74 104-206 583-657 (968)
51 COG0187 GyrB Type IIA topoisom 95.9 0.028 6E-07 66.6 9.0 164 101-287 37-211 (635)
52 PHA02569 39 DNA topoisomerase 95.8 0.013 2.9E-07 70.0 6.0 157 103-285 48-222 (602)
53 KOG0019 Molecular chaperone (H 95.6 0.00027 5.9E-09 82.2 -8.5 225 512-749 375-604 (656)
54 PTZ00108 DNA topoisomerase 2-l 95.4 0.065 1.4E-06 69.1 10.4 162 103-286 60-241 (1388)
55 PRK09303 adaptive-response sen 95.3 0.034 7.4E-07 62.5 6.9 77 103-207 275-352 (380)
56 PRK09467 envZ osmolarity senso 95.3 0.024 5.1E-07 63.8 5.5 33 137-169 350-382 (435)
57 TIGR03785 marine_sort_HK prote 94.9 0.044 9.5E-07 66.9 6.8 80 103-208 600-679 (703)
58 PRK10337 sensor protein QseC; 94.9 0.042 9E-07 62.2 6.2 71 104-207 356-426 (449)
59 PRK11107 hybrid sensory histid 94.7 0.049 1.1E-06 67.3 6.6 86 104-216 412-506 (919)
60 PRK11091 aerobic respiration c 94.6 0.18 3.8E-06 61.8 11.1 90 103-218 401-495 (779)
61 PRK13837 two-component VirA-li 94.6 0.19 4E-06 62.5 11.1 83 103-217 563-664 (828)
62 PRK10618 phosphotransfer inter 94.5 0.062 1.3E-06 67.4 6.7 50 103-169 568-620 (894)
63 PRK03660 anti-sigma F factor; 94.4 0.1 2.2E-06 50.3 6.7 48 102-162 41-88 (146)
64 PRK10841 hybrid sensory kinase 94.3 0.086 1.9E-06 66.4 7.6 78 103-207 565-642 (924)
65 PRK10600 nitrate/nitrite senso 94.3 0.057 1.2E-06 63.8 5.7 27 137-163 489-515 (569)
66 TIGR01925 spIIAB anti-sigma F 94.3 0.11 2.3E-06 49.7 6.4 46 103-161 42-87 (137)
67 PTZ00109 DNA gyrase subunit b; 94.2 0.12 2.7E-06 63.8 8.2 162 102-285 131-356 (903)
68 PRK10547 chemotaxis protein Ch 94.2 0.17 3.7E-06 61.5 9.4 53 105-167 390-448 (670)
69 PRK10490 sensor protein KdpD; 94.0 0.099 2.1E-06 65.6 7.0 76 103-206 781-856 (895)
70 COG3290 CitA Signal transducti 93.5 0.12 2.5E-06 60.6 6.0 73 103-203 430-502 (537)
71 COG4191 Signal transduction hi 93.4 0.096 2.1E-06 61.8 5.2 51 105-169 502-552 (603)
72 PRK09959 hybrid sensory histid 93.2 0.14 2.9E-06 65.8 6.6 76 103-207 831-911 (1197)
73 PRK09835 sensor kinase CusS; P 92.9 0.15 3.2E-06 58.0 5.7 33 137-169 396-428 (482)
74 PRK13557 histidine kinase; Pro 92.9 0.14 3.1E-06 58.6 5.6 18 150-167 326-343 (540)
75 COG0642 BaeS Signal transducti 92.6 0.15 3.2E-06 53.1 4.8 49 102-167 230-278 (336)
76 PF13581 HATPase_c_2: Histidin 91.8 0.35 7.6E-06 45.3 5.8 81 102-212 33-113 (125)
77 PRK11073 glnL nitrogen regulat 91.1 0.38 8.2E-06 52.4 6.0 51 102-167 239-299 (348)
78 PRK04069 serine-protein kinase 91.0 0.39 8.5E-06 47.8 5.6 87 103-214 45-131 (161)
79 TIGR01924 rsbW_low_gc serine-p 90.8 0.33 7.1E-06 48.5 4.7 87 103-214 45-131 (159)
80 COG5000 NtrY Signal transducti 90.4 0.62 1.3E-05 55.5 7.1 54 105-169 605-660 (712)
81 COG3920 Signal transduction hi 89.2 0.59 1.3E-05 49.4 5.3 48 103-163 125-174 (221)
82 PRK13560 hypothetical protein; 88.8 0.44 9.5E-06 57.6 4.6 45 104-163 715-762 (807)
83 KOG0787 Dehydrogenase kinase [ 86.9 2.2 4.7E-05 48.4 8.1 124 102-260 262-385 (414)
84 COG0643 CheA Chemotaxis protei 86.7 0.57 1.2E-05 57.5 3.8 126 104-254 436-572 (716)
85 PRK11644 sensory histidine kin 85.5 0.83 1.8E-05 53.6 4.3 43 104-163 414-456 (495)
86 COG4585 Signal transduction hi 84.5 0.75 1.6E-05 51.4 3.2 46 103-165 282-327 (365)
87 COG4251 Bacteriophytochrome (l 84.4 1.4 3.1E-05 52.7 5.4 68 138-217 657-730 (750)
88 COG2172 RsbW Anti-sigma regula 82.7 3.6 7.7E-05 40.9 6.7 84 102-216 42-128 (146)
89 COG3850 NarQ Signal transducti 78.7 2.8 6.1E-05 49.4 5.1 43 104-163 485-527 (574)
90 COG2972 Predicted signal trans 75.0 9 0.00019 44.6 8.0 56 98-167 348-405 (456)
91 COG2205 KdpD Osmosensitive K+ 71.4 7.3 0.00016 48.3 6.2 39 135-173 794-832 (890)
92 COG5002 VicK Signal transducti 69.9 5.7 0.00012 44.9 4.5 84 138-254 362-447 (459)
93 PRK10935 nitrate/nitrite senso 69.5 5.8 0.00013 46.3 4.9 25 138-162 492-517 (565)
94 COG4192 Signal transduction hi 69.2 8.4 0.00018 44.9 5.7 49 104-169 568-619 (673)
95 PRK13559 hypothetical protein; 66.5 6.2 0.00013 43.3 4.0 44 104-162 271-318 (361)
96 KOG0355 DNA topoisomerase type 63.7 11 0.00024 46.6 5.7 122 104-252 57-192 (842)
97 KOG1845 MORC family ATPases [C 56.7 8.3 0.00018 47.7 3.0 95 103-216 149-246 (775)
98 PF06112 Herpes_capsid: Gammah 43.3 26 0.00057 35.0 3.6 27 710-736 13-39 (147)
99 PF12588 PSDC: Phophatidylseri 39.6 50 0.0011 32.9 4.9 53 719-774 2-59 (141)
100 KOG1845 MORC family ATPases [C 36.1 29 0.00064 43.1 3.3 52 151-217 2-54 (775)
101 COG1578 Uncharacterized conser 31.6 2.9E+02 0.0064 30.6 9.5 77 519-602 105-183 (285)
102 COG4564 Signal transduction hi 30.2 55 0.0012 37.1 3.9 57 97-166 352-408 (459)
103 PF04122 CW_binding_2: Putativ 29.3 1.6E+02 0.0035 26.3 6.2 56 569-627 24-80 (92)
104 PF12641 Flavodoxin_3: Flavodo 26.7 6.5E+02 0.014 25.4 10.6 135 545-730 2-141 (160)
105 COG2865 Predicted transcriptio 21.0 3.3E+02 0.0072 32.4 8.2 87 96-206 266-356 (467)
106 COG3851 UhpB Signal transducti 20.1 1.3E+02 0.0028 34.7 4.3 27 135-161 428-454 (497)
No 1
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-215 Score=1724.17 Aligned_cols=738 Identities=61% Similarity=0.998 Sum_probs=691.5
Q ss_pred CCcccchhHHHHHHHHHhcCCCcccccccccccccccCCCcccccccCCCCCCCCCchhhhhhhhhhhh--------hhh
Q 003458 1 MRKWTIPSILLLLFLVALIPDQGRNIQAKAEDESDKLVDPPKVEEKLGAVPNGLSTDSDVAKREAESIS--------KRS 72 (818)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 72 (818)
||.+.+.+++||+.+++++++..+.+++ .+++++|.+++|++++.++++|++++|+ .|+
T Consensus 1 m~~~~lv~~~~L~~~~~l~ad~~~~~~~-------------~~ee~~~~~~e~sk~e~e~~~ree~si~lDgl~~~q~ke 67 (785)
T KOG0020|consen 1 MRKRTLVSVLLLFGFLFLLADDERKLHA-------------TAEEDLGDVTEGSKTEEEIGGREEESIQLDGLNVSQIKE 67 (785)
T ss_pred CcchhHHHHHHHHHHHHhcccccccccc-------------chhhhccccCCCCcchhhhccccchheecccccHHHHHH
Confidence 7888888888887777888777655553 4667799999999999999999999998 789
Q ss_pred ccccccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEE
Q 003458 73 LRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILS 152 (818)
Q Consensus 73 ~~~~~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~ 152 (818)
+|+.+++|+||++|+|||+||+||||+|++||||||||||+||++|+|+++|+++.++ +.++++.|+|..|++++.|+
T Consensus 68 lR~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L--~~~~el~ikIK~Dke~klLh 145 (785)
T KOG0020|consen 68 LRSKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVL--GETEELEIKIKADKEKKLLH 145 (785)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHh--CcCcceEEEEeechhhCeee
Confidence 9999999999999999999999999999999999999999999999999999999999 67899999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCC-----CccccccccceeeeeeccEEEEEEeeCCCeeEEEEEc
Q 003458 153 IRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDL-----NLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESK 227 (818)
Q Consensus 153 I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~-----~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~ 227 (818)
|+|+|||||++||++||||||+||+++|+++|++.++. ++||||||||||+|+|||+|+|+|+|+++.+|+|+|+
T Consensus 146 i~DtGiGMT~edLi~NLGTIAkSGTs~Fl~Km~~~~~~~~~~~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~QyiWESd 225 (785)
T KOG0020|consen 146 ITDTGIGMTREDLIKNLGTIAKSGTSEFLEKMQDSGDSEGLMNDLIGQFGVGFYSAFLVADRVVVTSKHNDDSQYIWESD 225 (785)
T ss_pred EecccCCccHHHHHHhhhhhhcccHHHHHHHhhccccchhhHHHHHHhcchhhhhhhhhcceEEEEeccCCccceeeecc
Confidence 99999999999999999999999999999999875443 7999999999999999999999999999999999999
Q ss_pred CCCceEEEeCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHh
Q 003458 228 ADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKA 307 (818)
Q Consensus 228 ~~~~f~i~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (818)
+. .|+|.++|++++++|||+|+|||++++.+||++++|++||++||+||+|||++|.++++++|+|.+|+++..++.
T Consensus 226 an-~FsvseDprg~tL~RGt~ItL~LkeEA~dyLE~dtlkeLvkkYSqFINFpI~lWsSKt~~~E~pvEEe~~t~e~~-- 302 (785)
T KOG0020|consen 226 AN-SFSVSEDPRGNTLGRGTEITLYLKEEAGDYLEEDTLKELVKKYSQFINFPISLWSSKTVEVEVPVEEEEETEEDS-- 302 (785)
T ss_pred Cc-ceeeecCCCCCcccCccEEEEEehhhhhhhcchhHHHHHHHHHHHhcCCceeeeeccceeeeccccccccccccc--
Confidence 87 999999999999999999999999999999999999999999999999999999999999999987754322110
Q ss_pred hhhhhhhcccCCCCccccccccCCCcccceecccceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeee
Q 003458 308 EKEEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHF 387 (818)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf 387 (818)
.+ +++ ..++++++++||||+|++|+|+|+.+|+.+|||+|+|++|+++||..|||++++|+ .+||+|+||
T Consensus 303 --~e--d~e----a~vEEee~EKpKTKKV~kT~wdWel~NdvKpIW~R~p~eV~EdEYt~FYkSlsKds--~dPma~~HF 372 (785)
T KOG0020|consen 303 --TE--DKE----AAVEEEEEEKPKTKKVEKTVWDWELLNDVKPIWLRKPKEVTEDEYTKFYKSLSKDS--TDPMAYIHF 372 (785)
T ss_pred --cc--chh----hhhhhhhhccccccchhhcchhhhhhcccchhhccCchhcchHHHHHHHHhhhccc--cCccceeee
Confidence 00 111 12334445569999999999999999999999999999999999999999999999 889999999
Q ss_pred ecccceeeEEEEEecCCCCcchhhhhhcccccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccch
Q 003458 388 NAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHS 467 (818)
Q Consensus 388 ~~eg~~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~ 467 (818)
++||+|+|++|||||+.+|.++|++||++.+.+||||||||||||+|.++||+||+||||||||||||||||||+||||+
T Consensus 373 ~aEGeVtFksiLyVP~~~P~~lf~~Yg~~~~dniKLYVrrVFItDeF~dmmPkYLsFikGvVDSDdLPLNVSrE~LQQHk 452 (785)
T KOG0020|consen 373 TAEGEVTFKSILYVPKKAPRDLFDEYGSKKSDNIKLYVRRVFITDEFHDMMPKYLSFIKGVVDSDDLPLNVSRETLQQHK 452 (785)
T ss_pred eccccEEEEEEEEeCCCCchHHHHHhccccccceeEEEEEEEecchHHHHhHHHHHHHhhccCcCcCcccccHHHHHHHH
Confidence 99999999999999999999999999878899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCcchhhHHHH-HHHHHhHHhhhhcccCHHhHHHHhcccc
Q 003458 468 SLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTK-FWNEFGKSIKLGIIEDAANRNRLAKLLR 546 (818)
Q Consensus 468 ~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-f~~~f~~~iK~G~~eD~~nr~~lakLLr 546 (818)
+|++|+|+||||+|+||++++.+ +|.. ||++||++||+|++||++||.+||+|||
T Consensus 453 llKvIkKKLvrK~LDmikKia~e------------------------~~~d~FW~EFgtniKLGviED~sNr~rLAKLLr 508 (785)
T KOG0020|consen 453 LLKVIKKKLVRKVLDMIKKIAGE------------------------KYDDIFWKEFGTNIKLGVIEDPSNRTRLAKLLR 508 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc------------------------ccchHHHHHhccceeeeeeeCcccHHHHHHHHh
Confidence 99999999999999999999987 7777 9999999999999999999999999999
Q ss_pred ceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEee
Q 003458 547 FESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNV 626 (818)
Q Consensus 547 F~ss~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V 626 (818)
|+||+++++.+||++|++|||+.|+.|||++|.|++++++|||+|+|.+|||||||||+||||||||.|++|+||+||||
T Consensus 509 Fqss~~~~~~TsLdqYveRMK~kQ~~IyymaGssr~e~E~sPfvERLlkKGyEVi~ltepVDEyciqalpe~d~KkFQNV 588 (785)
T KOG0020|consen 509 FQSSNHPTKITSLDQYVERMKEKQDKIYYMAGSSRKEVEKSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKKFQNV 588 (785)
T ss_pred hhccCCCCCcccHHHHHHHHhhccccEEEecCCcHhhhccCcHHHHHHhcCceEEEEcchhHHHHHHhhhhhcchhHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcc--h--HHHHHHHHHHHHHHH-hhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccc--
Q 003458 627 SKEGLKLGKDTK--D--KELKESFKELTKWWK-GALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLS-- 699 (818)
Q Consensus 627 ~k~~~~l~~~ek--~--~~~~~~~~~L~~~lK-~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~-- 699 (818)
+|+|+++++++| + +..+++|+||++||| .+|+++ |++++||+||++|||+||+++||||+||||||++|+++
T Consensus 589 aKEG~k~~~~eK~Ke~~e~l~~~FepL~~W~k~~alkd~-ieka~vSqrL~~spcalVas~~GwsgNmERimksqa~~~~ 667 (785)
T KOG0020|consen 589 AKEGVKFDKSEKTKESHEALEEEFEPLTKWLKDKALKDK-IEKAVVSQRLTESPCALVASQYGWSGNMERIMKSQAYQKS 667 (785)
T ss_pred HhhhcccCcccchhHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHhccCchhhhhhhccccccHHHHHHHhhhhcc
Confidence 999999987773 3 668999999999999 578888 99999999999999999999999999999999999996
Q ss_pred -cchhhhhcccccceeeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCC
Q 003458 700 -DASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNIS 778 (818)
Q Consensus 700 -d~~~~~~~~~kkiLEINp~HPlIk~L~~~~~~d~~d~~~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l~~~ 778 (818)
|++.+.|+.+|++|||||+||||+.|++|+..|+.|+.++++|.+||+||+|+|||.+.||.+|+.||++||+++|+|+
T Consensus 668 kD~~~~~Y~~qKkt~EINPRHPlirell~Ri~adeeD~t~~d~A~lmf~TAtlrSGf~L~d~~~fadrIe~~lr~sL~is 747 (785)
T KOG0020|consen 668 KDPSKNYYASQKKTFEINPRHPLIRELLRRIAADEEDETVKDTAVLMFETATLRSGFILQDTKDFADRIENMLRQSLNIS 747 (785)
T ss_pred CCchhhHHhccCceeeeCCCChHHHHHHHHhhcCcccchHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHhhcCCC
Confidence 7777789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCccC
Q 003458 779 PDAAVEEEDDVEE 791 (818)
Q Consensus 779 ~~~~~~~~~~~~~ 791 (818)
+|++++++.++++
T Consensus 748 ~Da~ve~e~e~ee 760 (785)
T KOG0020|consen 748 PDAQVEEEIEEEE 760 (785)
T ss_pred ccccccccccccc
Confidence 9998877655443
No 2
>PTZ00130 heat shock protein 90; Provisional
Probab=100.00 E-value=2.1e-177 Score=1541.10 Aligned_cols=751 Identities=41% Similarity=0.700 Sum_probs=638.1
Q ss_pred CCcccchhHHHHHHHHHhcCCCcccccccccccccccCCCcccccccCCCCCCCCCchhhhhh--hhhhhhhhhcccccc
Q 003458 1 MRKWTIPSILLLLFLVALIPDQGRNIQAKAEDESDKLVDPPKVEEKLGAVPNGLSTDSDVAKR--EAESISKRSLRNNAE 78 (818)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e 78 (818)
|+..+.+-|.|++|.| +++++..+|+.- |..+|++.++ |..+.-...|.+.+.. ++|.++ ++.+
T Consensus 1 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e 66 (814)
T PTZ00130 1 MKLNRVFFCAFVICAL-----QPNWVPQLCNVL--CESDEGKSEE--KEEKEEVKKDRDNIPEIEDGEKPT-----SGIE 66 (814)
T ss_pred Cccceeeeehhhhhhc-----CccchhhhCcee--ecCCCCcccC--CCCcchhhcccccCcccccCCCCC-----cccc
Confidence 5666666555554444 355666666655 6777666443 2333334455555543 334443 4568
Q ss_pred ccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCC
Q 003458 79 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGI 158 (818)
Q Consensus 79 ~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGi 158 (818)
+|+||||+++||+||+++||||++||||||||||+|||+|+||++++++.++ +...++.|+|..|+++++|+|+||||
T Consensus 67 ~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~--~~~~~~~I~I~~D~~~~tLtI~DnGI 144 (814)
T PTZ00130 67 QHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL--GEEKKLEIRISANKEKNILSITDTGI 144 (814)
T ss_pred eeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhc--CCCCCceEEEEECCCCCEEEEEECCC
Confidence 9999999999999999999999999999999999999999999999999887 56678999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCchhHHHhhhh-cCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeC
Q 003458 159 GMTKEDLIKNLGTIAKSGTSAFVEKMQT-SGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISED 237 (818)
Q Consensus 159 GMT~~dL~~~LgtIa~Sg~~~f~~~l~~-~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~ 237 (818)
|||++||++||||||+||++.|+++++. +.+.++||||||||||||||||+|+|+||++++.+|+|+|+|+|.|+|.+.
T Consensus 145 GMT~eEl~~nLgTIA~Sgt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y~I~e~ 224 (814)
T PTZ00130 145 GMTKEDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKFTIYKD 224 (814)
T ss_pred CCCHHHHHHHhhhhcccccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcEEEEEC
Confidence 9999999999999999999999998874 345789999999999999999999999999888899999999999999998
Q ss_pred CCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhhhhhhhccc
Q 003458 238 TWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSE 317 (818)
Q Consensus 238 ~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (818)
+++.+..|||+|+|||++++.+|++.++|++||++||+||+|||++++.++++++++.++..+. + +++.+++.
T Consensus 225 ~~~~~~~rGT~I~LhLked~~efl~~~~ik~likkYS~fI~~PI~l~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~ 297 (814)
T PTZ00130 225 PRGSTLKRGTRISLHLKEDATNLMNDKKLVDLISKYSQFIQYPIYLLHENVYTEEVLADIAKEM--E-----NDPNYDSV 297 (814)
T ss_pred CCCCCCCCCcEEEEEECCchhhhccHHHHHHHHHHhhccCCCCEEEcccccccccccccccccc--c-----cccccccc
Confidence 7666778999999999999999999999999999999999999999876655544443221000 0 00000000
Q ss_pred CCCCccccccccCCCcccceecccceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceeeEE
Q 003458 318 SESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKA 397 (818)
Q Consensus 318 ~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f~~ 397 (818)
+. ++.+++++++++|++++++|++||+++|||+|+|++||+|||.+|||++++++ ++||+|+||++||+++|+|
T Consensus 298 e~----~~~~~~~~k~k~v~~~~~~~e~vN~~~aiW~r~~~eit~EeY~eFYk~l~~~~--~dPl~~iH~~~Eg~~~~~~ 371 (814)
T PTZ00130 298 KV----EETDDPNKKTRTVEKKVKKWKLMNEQKPIWLRPPKELTDEDYKKFFSVLSGFN--DEPLYHIHFFAEGEIEFKC 371 (814)
T ss_pred cc----cccccccccccccccceeeeeeeccCCCcccCCcccCCHHHHHHHHHHhcCCc--cCCceeeeeccCCCeeEEE
Confidence 11 11112356788899999999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEEecCCCCcchhhhhhcccccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHHHH
Q 003458 398 VLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLI 477 (818)
Q Consensus 398 llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~l~ 477 (818)
|||||+.+|+++|. + ....++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|+
T Consensus 372 LLYIP~~ap~~~~~-~-~~~~~~ikLYvrrVfI~d~~~dLLP~wL~FVkGVVDSeDLPLNVSRE~LQ~n~~l~~Irk~l~ 449 (814)
T PTZ00130 372 LIYIPSRAPSINDH-L-FTKQNSIKLYVRRVLVADEFVEFLPRYMSFVKGVVDSDDLPLNVSREQLQQNKILKAVSKRIV 449 (814)
T ss_pred EEEecCCCccchhh-h-hhccCceEEEEeeEEeecchhhhhhHHHhhhEEEeecCCCCCccCHHHHccCHHHHHHHHHHH
Confidence 99999999998765 1 135789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcC------CCCccccc--ccCCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhcccccee
Q 003458 478 RKALDMIRKIAEEDPDEST------GKDKKDVE--KFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFES 549 (818)
Q Consensus 478 ~k~l~~l~~la~~~~~~~~------~~~~~~~~--~~~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~s 549 (818)
+|+++||+++++++..+.+ +.++.+.. +.....++|++|.+||++||.+||+||++|..||++|++||||+|
T Consensus 450 kkil~~L~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~e~Y~kF~~~fg~~LK~Gv~eD~~nre~l~~LLrF~S 529 (814)
T PTZ00130 450 RKILDTFRTLYKEGKKNKETLRAELAKETDEEKKKEIQKKINEPSTYKLIYKEYRKYLKTGCYEDDINRNKIVKLLLFKT 529 (814)
T ss_pred HHHHHHHHHHHhhccccchhcccccccccccccccccccccccHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhheeee
Confidence 9999999999985222211 11111000 000111378899999999999999999999999999999999999
Q ss_pred cCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccc
Q 003458 550 TKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKE 629 (818)
Q Consensus 550 s~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~ 629 (818)
|++. +++||++||+||+++|+.|||++|++++++++|||+|.|+++|||||||++|||||||++|++|+|++|++|+++
T Consensus 530 s~~~-~~~SL~eYv~rMke~Qk~IYY~t~~s~~~~~~SP~lE~~~~kg~EVL~l~d~iDE~~l~~L~e~~gk~~~sV~~~ 608 (814)
T PTZ00130 530 MLHP-KSISLDTYIENMKPDQKFIYYASGDSYEYLSKIPQLQIFKKKNIDVVFLTESVDESCVQRVQEYDGKKFKSIQKG 608 (814)
T ss_pred CCCC-CccCHHHHHhhhccCCeEEEEEeCCCHHHHhcChHHHHHHhCCCeEEEeCCchHHHHHHHHHHhcCceEEEeccc
Confidence 9873 699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCc--ch--HHHHHHHHHHHHHHHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhh
Q 003458 630 GLKLGKDT--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQA 705 (818)
Q Consensus 630 ~~~l~~~e--k~--~~~~~~~~~L~~~lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~ 705 (818)
+++++..+ ++ ++.+++|++|++|||++|+++ |.+|++|+||++||||||++++|||++|+|||++|+. +++++.
T Consensus 609 ~~~~~~~~~e~~~~~~~~~~~~~L~~~~k~~L~~~-V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~-~~~~~~ 686 (814)
T PTZ00130 609 EITFELTEDEKKKEEKVKKMYKALIDVISDTLRNQ-IFKVEISRRLVDAPCAVVSTEWGLSGQMEKLMKINVN-NSDQIK 686 (814)
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHhcCc-ccEEEEeccCCCCCcEEEecCccccHHHHHHHHHhhc-cccccc
Confidence 98876322 22 445677999999999999999 9999999999999999999999999999999999863 222234
Q ss_pred hcccccceeeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCCCccccc
Q 003458 706 YMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPDAAVEE 785 (818)
Q Consensus 706 ~~~~kkiLEINp~HPlIk~L~~~~~~d~~d~~~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l~~~~~~~~~~ 785 (818)
++..+|||||||+||||++|+.++..+++++.++++|+||||+|+|++|+.++||+.|++||++||.++|++++++++++
T Consensus 687 ~~~~k~iLEINp~Hpii~~L~~~~~~~~~~~~~~~~a~~Lyd~AlL~~G~~l~DP~~fa~ri~~ll~~~l~~~~~~~~~~ 766 (814)
T PTZ00130 687 AMSGQKILEINPDHPIMIDLLKRSVSNPKDSQLTESIKIIYQSAKLASGFDLEDTADLAQIVYDHINQKLGVDNNLKIDD 766 (814)
T ss_pred cccCCeEEEECCCCHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCccccccc
Confidence 66789999999999999999877656677777999999999999999999999999999999999999999999987765
No 3
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=100.00 E-value=9.3e-174 Score=1510.20 Aligned_cols=670 Identities=50% Similarity=0.868 Sum_probs=600.9
Q ss_pred cccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCC
Q 003458 78 EKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRG 157 (818)
Q Consensus 78 e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNG 157 (818)
++|.||||+++||+||+||||||++||||||||||+|||+|+||.+++++.++ +..+++.|+|..|+++++|+|.|||
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~i~~d~~~~~L~I~DnG 80 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVL--GESPRLCIRVVPDKENKTLTVEDNG 80 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhc--CCCCceEEEEEEcCCCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999999877 4556789999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeC
Q 003458 158 IGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISED 237 (818)
Q Consensus 158 iGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~ 237 (818)
+|||++||.++|||||+||++.|+++++.+.+.++|||||||||||||||++|+|+||++++.+|+|+|+|+|.|+|.+.
T Consensus 81 iGMt~edl~~~LgtIa~SGt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~~~~~W~s~~~g~y~i~~~ 160 (701)
T PTZ00272 81 IGMTKADLVNNLGTIARSGTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSDESYVWESSAGGTFTITST 160 (701)
T ss_pred CCCCHHHHHHHhhhhhhcchHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCCceEEEEECCCCcEEEEeC
Confidence 99999999999999999999999988865566789999999999999999999999999877899999999999999987
Q ss_pred CCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhhhhhhhccc
Q 003458 238 TWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSE 317 (818)
Q Consensus 238 ~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (818)
++ ....+||+|+|||++++.+|++.++|++||++||+||+|||+++..++.+.++++++++....+ + +++ ++.
T Consensus 161 ~~-~~~~~GT~I~L~Lk~d~~ef~~~~~i~~li~kYs~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~---~-~~~--~~~ 233 (701)
T PTZ00272 161 PE-SDMKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKA---D-EDG--EEP 233 (701)
T ss_pred CC-CCCCCCCEEEEEECCchHHhccHHHHHHHHHHhccccCcceEEeeccccccccCcchhhhcccc---c-ccc--ccc
Confidence 53 4568999999999999999999999999999999999999999876655444433211100000 0 000 011
Q ss_pred CCCCccccccccCCCcccceecccceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceeeEE
Q 003458 318 SESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKA 397 (818)
Q Consensus 318 ~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f~~ 397 (818)
++.+..++++++++|++++++++|+|++||+++|||+|+|++||++||.+|||+++++| ++||+|+||++||+++|+|
T Consensus 234 ~~~~~~~~~~~~~~k~~~~~~~~~~~e~iN~~~~lW~r~~~~i~~eey~~Fyk~~~~~~--~~Pl~~ih~~~eg~~~~~~ 311 (701)
T PTZ00272 234 KVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEEYAAFYKAISNDW--EDPAATKHFSVEGQLEFRS 311 (701)
T ss_pred ccccccccccccccccccccccccchhhcccCcCCeecCcccCCHHHHHHHHHHhcCCc--CCCceeeeeccCCceeeEE
Confidence 11011112223456788899999999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEEecCCCCcchhhhhhcccccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHHHH
Q 003458 398 VLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLI 477 (818)
Q Consensus 398 llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~l~ 477 (818)
|||||..+|+++|+. ....++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|+
T Consensus 312 llyiP~~~~~~~~~~--~~~~~~i~LY~~rVfI~d~~~~llP~~l~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~i~~~i~ 389 (701)
T PTZ00272 312 IMFVPKRAPFDMFEP--NKKRNNIKLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIV 389 (701)
T ss_pred EEEeCCCCccchhhh--hhccCceEEEEeeEEEecchhhhhHHHHhheeEEeecCCCCCccCHHHHccCHHHHHHHHHHH
Confidence 999999999999864 235789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcCCCCcccccccCCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCccc
Q 003458 478 RKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLT 557 (818)
Q Consensus 478 ~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~~~~~ 557 (818)
+|++++|+++|++ +++|.+||++||.+||+|+++|..||++|++||||+||.++++++
T Consensus 390 ~ki~~~l~~la~~----------------------~~~y~~f~~~~g~~lK~G~~~D~~~~~~l~~Llrf~ss~~~~~~~ 447 (701)
T PTZ00272 390 KKCLEMFDEVAEN----------------------KEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMT 447 (701)
T ss_pred HHHHHHHHHHhhC----------------------HHHHHHHHHHHhhhhheeeccCHhHHHHHHHhhceeecCCCCcee
Confidence 9999999999865 469999999999999999999999999999999999998767899
Q ss_pred CHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccccCCCCc
Q 003458 558 SLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT 637 (818)
Q Consensus 558 SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e 637 (818)
||++||+|||++|+.|||++|+|++++++|||+|.|++||||||||+|||||||||+|++|+|++|+||+++++++++.+
T Consensus 448 sL~eYv~rmk~~Q~~IYY~~~~s~~~~~~sP~lE~~~~kg~EVL~l~dpiDe~~i~~l~ey~~k~f~sV~~~~~~l~~~~ 527 (701)
T PTZ00272 448 TLKDYVTRMKAGQKSIYYITGDSKKKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESE 527 (701)
T ss_pred eHHHHHHhhccCCceEEEEeCCCHHHHHhChHHHHHHhCCCeEEEeCCcHHHHHHHHHHhcCCCceEecccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999886322
Q ss_pred --ch--HHHHHHHHHHHHHHHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhhhcccccce
Q 003458 638 --KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVL 713 (818)
Q Consensus 638 --k~--~~~~~~~~~L~~~lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~~~~~kkiL 713 (818)
++ ++.+++|++|++|||++||++ |.+|++|+||++||||||++++|||++|+|||++|++++..+..++..++||
T Consensus 528 ~e~~~~~~~~~~~~~L~~~~k~~L~~k-V~~VkvS~RL~~sPa~lv~~e~g~s~~Merimkaq~~~~~~~~~~~~~kkiL 606 (701)
T PTZ00272 528 EEKQQREEEKAACEKLCKTMKEVLGDK-VEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTM 606 (701)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHhCCc-ccEEEEeccCCCCCeEEEecccchhHHHHHHHHhcccccccccccccCCeEE
Confidence 22 445678999999999999999 9999999999999999999999999999999999976443233456789999
Q ss_pred eeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCCCccc
Q 003458 714 EINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPDAAV 783 (818)
Q Consensus 714 EINp~HPlIk~L~~~~~~d~~d~~~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l~~~~~~~~ 783 (818)
||||+||||++|++++..+++++.++++|+||||+|+|++|+.++||+.|++|+++||..+||++.++++
T Consensus 607 EINP~HpiIk~L~~~~~~~~~~~~~~~la~~LyD~AlL~~G~~leDp~~f~~Ri~~lL~~~l~~~~~~~~ 676 (701)
T PTZ00272 607 ELNPRHPIIKELRRRVGADENDKAVKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEEEE 676 (701)
T ss_pred EECCCCHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcCCCccccc
Confidence 9999999999999877667777789999999999999999999999999999999999889999999865
No 4
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-170 Score=1411.43 Aligned_cols=615 Identities=46% Similarity=0.822 Sum_probs=590.9
Q ss_pred cccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEe
Q 003458 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (818)
Q Consensus 76 ~~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (818)
..++|.||||+++||+++++++||++++|||||||||+||++|+||.++++|+.+ .+++.|+|.+++++++|+|.|
T Consensus 33 ~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~~----~~~l~I~i~~nk~~~tlti~D 108 (656)
T KOG0019|consen 33 PQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEKA----LPELEIRIITNKDKRTITIQD 108 (656)
T ss_pred cccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCcccc----ccceeEEeccCCCcceEEEEe
Confidence 3489999999999999999999999999999999999999999999999999854 688999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCchhHHHhhh-hcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEE
Q 003458 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQ-TSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAI 234 (818)
Q Consensus 156 NGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~-~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i 234 (818)
+|||||++||.+||||||+||++.|++.++ .+.+.++||||||||||+||||++|+|+|+++++.++.|+|+++|+|+|
T Consensus 109 tGIGMTk~dLvnnLGTIAkSGtK~Fmealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e~y~Wes~~~gs~~v 188 (656)
T KOG0019|consen 109 TGIGMTKEDLVNNLGTIAKSGSKAFLEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADEGLQWTSNGRGSYEI 188 (656)
T ss_pred cCCCcCHHHHHhhhhhhhhcccHHHHHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCcceeeecCCCCceEE
Confidence 999999999999999999999999999999 5788899999999999999999999999999988899999999999999
Q ss_pred EeCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhhhhhhh
Q 003458 235 SEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETE 314 (818)
Q Consensus 235 ~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (818)
..++ ...+||+|+|||+++..+|+++.+|+++|+|||+||.|||++|+.
T Consensus 189 ~~~~---~~~rGTki~l~lKe~~~ey~ee~rikeiVKK~S~Fv~yPI~l~~e---------------------------- 237 (656)
T KOG0019|consen 189 AEAS---GLRTGTKIVIHLKEGDCEFLEEKRIKEVVKKYSNFVSYPIYLNGE---------------------------- 237 (656)
T ss_pred eecc---CccccceEEeeehhhhhhhccHhHHHHHHhhccccccccchhhhh----------------------------
Confidence 9864 389999999999998889999999999999999999999999852
Q ss_pred cccCCCCccccccccCCCcccceecccceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeeccccee
Q 003458 315 KSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVE 394 (818)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~ 394 (818)
.+|..+|||+|+|++||.|||.+|||+++++| ++||++.||++||+++
T Consensus 238 ------------------------------k~N~tKpiW~rnp~dit~eey~eFYksl~ndw--~d~lav~hf~~eg~le 285 (656)
T KOG0019|consen 238 ------------------------------RVNNLKAIWTMNPKEVNEEEHEEFYKSVSGDW--DDPLYVLHFKTDGPLS 285 (656)
T ss_pred ------------------------------hhhccCcccccCchhhhHHHHHHHHHhhcccc--cchhhHhhhccccceE
Confidence 38999999999999999999999999999999 9999999999999999
Q ss_pred eEEEEEecCCCCcchhhhhhcccccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHH
Q 003458 395 FKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKK 474 (818)
Q Consensus 395 f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k 474 (818)
|++|||||+++|+++|+. .+.++||+||+|||||+|+|.+++|+||+||+|||||+|||||+|||+||++++|++||+
T Consensus 286 frail~vP~rap~~lF~~--~kk~n~i~Ly~rrv~I~d~~~~lipe~l~fv~gvVdSeDlPLNiSremlQ~~~i~k~~rk 363 (656)
T KOG0019|consen 286 IRSIFYIPKRAPNSMFDM--RKKKNGIKLYARRVLITDDAGDLIPEWLRFVRGVVDSEDIPLNLSREMLQENAVLRKLRK 363 (656)
T ss_pred EEEEEeccccCcchhhhh--hhccCceEEEEEEEecCchhHHHHHHHhchheeccccccCccchhHHHHhhhhHHHHHHH
Confidence 999999999999999987 466899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHH-HhccccceecCCC
Q 003458 475 KLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNR-LAKLLRFESTKSD 553 (818)
Q Consensus 475 ~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~-lakLLrF~ss~~~ 553 (818)
.|++|+++||..+| + +++.|++||++||.+||+||++|..|+.+ +|+||||+||.+.
T Consensus 364 ~l~~k~l~~~~e~a-~---------------------d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~~a~lLry~ss~s~ 421 (656)
T KOG0019|consen 364 VLPQKILEMFQDLA-K---------------------DAEKYKKFFKNYGLFLKEGIVTASEQQVKEIAKLLRYESSKSG 421 (656)
T ss_pred HHHHHHHHHHHHHh-h---------------------hHHHHHHHHHHHhhhhhhcccchhhhhhhHHHHHhhhhccccc
Confidence 99999999999999 4 57799999999999999999999999999 9999999999999
Q ss_pred CcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccccC
Q 003458 554 GKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKL 633 (818)
Q Consensus 554 ~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~l 633 (818)
++++||++|++||+++|+.|||+||+|+.++++|||+|+++++|+|||||++|+||+++++|.+|+||+|++|+|+++++
T Consensus 422 ~~~~Sl~dYv~rm~~~qk~iyyi~~~s~~~~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel 501 (656)
T KOG0019|consen 422 EGATSLDDYVERMREGQKNIYYITAPNRQLAESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVEL 501 (656)
T ss_pred cccccHHHHHHhhcccccceEEeccchhhhhhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCc--c-h-HHHHHHHHHHHHHHHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhhhccc
Q 003458 634 GKDT--K-D-KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRG 709 (818)
Q Consensus 634 ~~~e--k-~-~~~~~~~~~L~~~lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~~~~~ 709 (818)
++++ + + ++.+++|+.||+|||++||++ |++|+||+||++||||||+++||||+||+|||+||++.|....+||.+
T Consensus 502 ~e~ee~~~k~ee~k~efe~lck~mK~iL~~k-VekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~ 580 (656)
T KOG0019|consen 502 PEDDEEKAKDEESKKEFEELCKWMKEILGSK-VEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA 580 (656)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhcCc-eEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc
Confidence 8443 2 2 677889999999999999999 999999999999999999999999999999999999999988899999
Q ss_pred ccceeeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCCCccc
Q 003458 710 KRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPDAAV 783 (818)
Q Consensus 710 kkiLEINp~HPlIk~L~~~~~~d~~d~~~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l~~~~~~~~ 783 (818)
||+|||||+||||+.|.++++.|+++ .+++++.|||+||+|++||.++||+.|+.|||+||..+||++.+.+.
T Consensus 581 kk~lEINP~hpivk~L~~~~~~dk~d-~~k~lv~llfetALlssGfsl~dP~~~~~ri~~ml~~~l~~~e~~~~ 653 (656)
T KOG0019|consen 581 KKHLEINPDHPLVKTLRQLRESDKND-TAKDLVEQLYETALISAGFSLDDPQTMVGRINRLLKSGLGRDEDEVE 653 (656)
T ss_pred cceeeeCCCChHHHHHHHHHhcCcch-hHHHHHHHHHHHHHHHcCCCcCChHHHhhHHHHHHHHHhccCCCccc
Confidence 99999999999999999999999988 99999999999999999999999999999999999999999887643
No 5
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-164 Score=1389.61 Aligned_cols=611 Identities=47% Similarity=0.817 Sum_probs=569.9
Q ss_pred cccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEe
Q 003458 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (818)
Q Consensus 76 ~~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (818)
..+++.||+|+++||+||+|||||||+||||||||||+|||+|+||.++++|... ...++++|+|.+|+++++|+|+|
T Consensus 3 ~~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~--~~~~~~~I~i~~Dk~~kTLtI~D 80 (623)
T COG0326 3 EQETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELG--EGDSDLRIRISFDKDNKTLTISD 80 (623)
T ss_pred chhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCcccc--CCCCCceEEEEEcccCCEEEEEe
Confidence 3578999999999999999999999999999999999999999999999999876 56678999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCchhHHHhhhhc-CCCCccccccccceeeeeeccEEEEEEeeCC-CeeEEEEEcCCCceE
Q 003458 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-GDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQYVWESKADGAFA 233 (818)
Q Consensus 156 NGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~-~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~-d~~~~W~s~~~~~f~ 233 (818)
||||||++|++++|||||+|||+.|+++++.. .+.++||||||||||||||||+|+|+|++++ +.+++|+|+|+|.|+
T Consensus 81 NGIGMT~~Ev~~~LgTIAkSgT~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~yt 160 (623)
T COG0326 81 NGIGMTKDEVIENLGTIAKSGTKEFLESLSEDQKDSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYT 160 (623)
T ss_pred CCCCCCHHHHHHHHHHhhhccHHHHHHHhccccccccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceE
Confidence 99999999999999999999999999998754 3789999999999999999999999999996 568899999999999
Q ss_pred EEeCCCCCCCC-CCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhhhhh
Q 003458 234 ISEDTWNEPLG-RGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEE 312 (818)
Q Consensus 234 i~~~~~~~~~~-~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (818)
|++.++ .. +||+|+|||+++..+|++.|+|+++|+|||.||++||++.+.+..+
T Consensus 161 v~~~~~---~~~~GT~I~L~Lk~~e~efl~~~rl~~ivkkYSd~i~~PI~~~~~~~~~---------------------- 215 (623)
T COG0326 161 VEDIDK---EPRRGTEITLHLKEEEDEFLEEWRLREIVKKYSDHIAYPIYIEGEKEKD---------------------- 215 (623)
T ss_pred EeeccC---CCCCCcEEEEEECCchHHHhhhhHHHHHHHHHhcccccceEEeeecccc----------------------
Confidence 999753 34 6999999999999999999999999999999999999997643110
Q ss_pred hhcccCCCCccccccccCCCcccceecccceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccc
Q 003458 313 TEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGD 392 (818)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~ 392 (818)
. + +.+|+.||..+|||+|+++++++|+|.+||++++++| ++||.|+|+++||.
T Consensus 216 ------~----------~---------~~~~e~iN~~~alW~r~ksei~~eeY~eFYk~~~~d~--~~Pl~~~h~~~EG~ 268 (623)
T COG0326 216 ------E----------E---------VIEWETINKAKALWTRNKSEITDEEYKEFYKHLAHDF--DDPLLWIHNKVEGR 268 (623)
T ss_pred ------c----------c---------chhHHHhccccCcccCChhhCChHHHHHHHHHhhccc--CCCeEEEecccccc
Confidence 0 0 2358899999999999999999999999999999999 99999999999999
Q ss_pred eeeEEEEEecCCCCcchhhhhhcccccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHH
Q 003458 393 VEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTI 472 (818)
Q Consensus 393 ~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I 472 (818)
++|.+|||||.++|+|+|.+ ..+++++||||||||||+|.+|||+||+||+|||||+|||||||||+||+|++++.|
T Consensus 269 ~ey~~ll~iP~~aPfdl~~~---~~k~glkLYv~rVfI~Dd~~~llP~yl~Fv~GvIDS~DLpLNvSRE~LQ~n~~l~~I 345 (623)
T COG0326 269 LEYTALLFIPSKAPFDLFRR---DRKRGLKLYVNRVFIMDDAEDLLPNYLRFVRGVIDSEDLPLNVSREILQQNRILAAI 345 (623)
T ss_pred eEEEEEEEccCCCCcccccc---cccCCcEEEEeeeEEeCChhhhhhHHHhhheeeeecCCCCcccCHHHHccCHHHHHH
Confidence 99999999999999999986 457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhcccccee-cC
Q 003458 473 KKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFES-TK 551 (818)
Q Consensus 473 ~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~s-s~ 551 (818)
|+.|++|+++||++||++ +|++|.+||++||.+||+|+++|..||++|++||||.| +.
T Consensus 346 rk~l~kkvl~~L~~La~~---------------------~~e~y~~f~~~fg~~LKeG~~eD~~n~e~l~~lLrf~St~~ 404 (623)
T COG0326 346 RKALTKKVLSMLEKLAKD---------------------DPEKYRKFWKQFGLVLKEGLYEDFENKEKLLDLLRFRSTSD 404 (623)
T ss_pred HHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhEecccCC
Confidence 999999999999999999 89999999999999999999999999999999999999 45
Q ss_pred CCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccc
Q 003458 552 SDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGL 631 (818)
Q Consensus 552 ~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~ 631 (818)
+..+++||++||+|||++|+.|||+||++..++++||++|.|++||||||||+|+||+++|..+.+|+|++|++|+++++
T Consensus 405 ~~~~~~sl~eYv~rmke~q~~IyY~tges~~~~~~sP~lE~~k~kgieVL~l~d~iDe~~l~~~~e~egk~~~~i~~~~~ 484 (623)
T COG0326 405 SGEKTVSLEEYVSRMKEGQKQIYYITGESYQAAKGSPHLELFKAKGIEVLLLTDRIDEFMLTMLPEFEGKPFKSITKGDL 484 (623)
T ss_pred CccCcccHHHHHHhcccccceeEEeccccHHHHhcCchHHHHHhcCcEEEecCccchHHHhhhhhhccCCcceeeccccc
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCc----ch-HHHHHHHHHHHHHHHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhhh
Q 003458 632 KLGKDT----KD-KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAY 706 (818)
Q Consensus 632 ~l~~~e----k~-~~~~~~~~~L~~~lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~~ 706 (818)
.+...+ .. ++.+.+|++|++++|++|++. |.+|++|.||+++|||++++.++++.+|+|+|++|+.. .
T Consensus 485 ~~~~~~~e~~~~~~~~~~~~~~~~~~~k~~L~~~-vk~Vr~s~rl~dspa~l~~~~~~~~~~m~r~l~~~~~~------~ 557 (623)
T COG0326 485 DLELLEEEDEADSEEEKKEFKPLLERVKEILGDK-VKDVRLSHRLTDSPACLTTDGADLSTQMERLLKAQGQE------V 557 (623)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHHHHHHhcCc-cceeEeecccCCCcceeecCccchhHHHHHHHHhcccc------C
Confidence 876322 12 566778999999999999999 99999999999999999999999999999999988532 2
Q ss_pred cccccceeeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhc
Q 003458 707 MRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSL 775 (818)
Q Consensus 707 ~~~kkiLEINp~HPlIk~L~~~~~~d~~d~~~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l 775 (818)
...++||||||+||||++|.... +.+.+.++|++||++|+|++|+.++||+.|+.|++++|.+++
T Consensus 558 ~~~k~ilEiNp~h~lv~~L~~~~----d~~~~~~~~~llydqAll~eg~~~~dp~~F~~rln~ll~~~~ 622 (623)
T COG0326 558 PESKKILEINPNHPLVKKLASLE----DEASVADLVELLYDQALLAEGGPLEDPAAFIERLNDLLSRLL 622 (623)
T ss_pred CccccceeeCcccHHHHHHHhcc----cHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhc
Confidence 26799999999999999999864 456799999999999999999999999999999999998875
No 6
>PRK05218 heat shock protein 90; Provisional
Probab=100.00 E-value=1.2e-143 Score=1254.04 Aligned_cols=602 Identities=48% Similarity=0.833 Sum_probs=558.8
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeC
Q 003458 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (818)
Q Consensus 77 ~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (818)
.|++.||+|+++||+||+++||+||++|||||||||+|||+|+|+.+++++.+. ....++.|+|.+++++++|+|+||
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~--~~~~~~~I~I~~d~~~~~i~I~Dn 80 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALY--EGDGDLKIRISFDKEARTLTISDN 80 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCcccc--CCCCCcEEEEEEcCCCCeEEEEEC
Confidence 589999999999999999999999999999999999999999999999988865 456678999999998899999999
Q ss_pred CCCCCHHHHHHHHHHHhccCchhHHHhhhhc--CCCCccccccccceeeeeeccEEEEEEeeCC--CeeEEEEEcCCCce
Q 003458 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND--DKQYVWESKADGAF 232 (818)
Q Consensus 157 GiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~--~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~--d~~~~W~s~~~~~f 232 (818)
|+|||++|+.++|++||+||++.|+++++.. .+.++||+|||||||+||||++|+|+||+.+ +.++.|.+.|++.|
T Consensus 81 G~GMt~eel~~~l~~ia~Sg~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~ 160 (613)
T PRK05218 81 GIGMTREEVIENLGTIAKSGTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEY 160 (613)
T ss_pred CCCCCHHHHHHHHHhhccccchhHHHHhhcccccccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCcee
Confidence 9999999999999999999999999988532 3578999999999999999999999999965 45899999999999
Q ss_pred EEEeCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhhhhh
Q 003458 233 AISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEE 312 (818)
Q Consensus 233 ~i~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (818)
++.+.+ ...+||+|+|||++++.+|++.++|+++|++||+|+++||++++.
T Consensus 161 ~i~~~~---~~~~GT~I~l~Lk~~~~e~~e~~~i~~li~kys~~l~~PI~~~~~-------------------------- 211 (613)
T PRK05218 161 TIEEIE---KEERGTEITLHLKEDEDEFLDEWRIRSIIKKYSDFIPVPIKLEKE-------------------------- 211 (613)
T ss_pred EEeECC---CCCCCcEEEEEECcchhhhcCHHHHHHHHHHHHhcCCCCEEEecc--------------------------
Confidence 999863 347999999999999999999999999999999999999999531
Q ss_pred hhcccCCCCccccccccCCCcccceecccceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccc
Q 003458 313 TEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGD 392 (818)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~ 392 (818)
+|+++|+.+|+|+++++++++++|..||+.+++++ .+||+|+||+++|+
T Consensus 212 -----------------------------~~~~in~~~~~w~~~~~~i~~~~~~~fy~~~~~~~--~~pl~~i~~~~e~~ 260 (613)
T PRK05218 212 -----------------------------EEETINSASALWTRSKSEITDEEYKEFYKHLAHDF--DDPLFWIHNNVEGP 260 (613)
T ss_pred -----------------------------cceeecCCccceecCCccccHHHHHHHhhhhcccc--cCCcEEEEcccCCc
Confidence 26789999999999999999999999999999998 89999999999999
Q ss_pred eeeEEEEEecCCCCcchhhhhhcccccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHH
Q 003458 393 VEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTI 472 (818)
Q Consensus 393 ~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I 472 (818)
+.|+|+||||..+|+++|++ ...++++||||||||+|++++|||+||+||||||||+|||||||||+||+|++|++|
T Consensus 261 ~~~~gll~iP~~~~~~~~~~---~~~~~~~lyvn~v~I~d~~~~lLP~wl~Fv~GVVDs~dLplnvSRE~lq~~~~l~~i 337 (613)
T PRK05218 261 FEYTGLLYIPKKAPFDLFNR---DRKGGLKLYVKRVFIMDDAEELLPEYLRFVKGVIDSEDLPLNVSREILQEDRVVKKI 337 (613)
T ss_pred eEEEEEEEeCCCCccchhhh---cccccEEEEECcEEeeCchhhhchHHHhheEEEeecCCCCCccCHHHHhcCHHHHHH
Confidence 99999999999999988864 457899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCC
Q 003458 473 KKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKS 552 (818)
Q Consensus 473 ~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~ 552 (818)
++.|++|+++||+++|++ ++++|.+||++||.+||+||++|..||++|++||||+||+
T Consensus 338 ~~~l~~kv~~~l~~la~~---------------------d~~~y~~f~~~~~~~lK~g~~~D~~~~~~~~~lL~f~ts~- 395 (613)
T PRK05218 338 RKAITKKVLDELEKLAKN---------------------DREKYEKFWKEFGPVLKEGLYEDFANREKLAKLLRFASTH- 395 (613)
T ss_pred HHHHHHHHHHHHHHHHhh---------------------CHHHHHHHHHHHHHHHHhhhhccHHHHHHHHhhceeeecC-
Confidence 999999999999999998 8999999999999999999999999999999999999997
Q ss_pred CCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeecccccc
Q 003458 553 DGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLK 632 (818)
Q Consensus 553 ~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~ 632 (818)
+++++||++|++||+++|+.|||++|+|++++++|||+|.|+++|+||||+++|+|++|+++|.+|+|++|++|++++++
T Consensus 396 ~~~~~sL~ey~~rm~~~q~~Iyy~~~~~~~~~~~sp~~e~~~~~g~eVl~~~~~~De~~l~~l~~~~~~~~~~i~~~~~~ 475 (613)
T PRK05218 396 EGKYVSLAEYVERMKEGQKKIYYITGDSREAAKNSPHLELFKKKGIEVLLLTDPIDEFWISYLEEFDGKPFKSVARGDLD 475 (613)
T ss_pred CCCcccHHHHHHhCcCCCceEEEEeCCCHHHHHhChHHHHHHhcCceEEEeCCccHHHHHHHHHHhcCCceEEeeccccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--Cc-ch--HHHHHHHHHHHHHHHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhhhc
Q 003458 633 LGK--DT-KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYM 707 (818)
Q Consensus 633 l~~--~e-k~--~~~~~~~~~L~~~lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~~~ 707 (818)
+++ .+ +. +..+++|++|++|+|++|+++ |.+|++|.||+++|||||++++|++.+|+|+|++|+ +.++
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~-v~~V~~s~rl~~~Pa~~v~~~~~~~~~mer~~~~~~------~~~~ 548 (613)
T PRK05218 476 LGKEDEEEKEEKEEAEEEFKPLLERLKEALGDK-VKDVRLSHRLTDSPACLVADEGDMSTQMEKLLKAAG------QEVP 548 (613)
T ss_pred cccccchhhhhhhhhHHHHHHHHHHHHHHhcCc-ceEEEEeccCCCCCeEEEeCccchHHHHHHHHHhhh------hccc
Confidence 864 21 11 445668999999999999999 999999999999999999999999999999999884 2233
Q ss_pred ccccceeeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC
Q 003458 708 RGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLN 776 (818)
Q Consensus 708 ~~kkiLEINp~HPlIk~L~~~~~~d~~d~~~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l~ 776 (818)
..+++|||||+||||++|+... + ++.++.+|++||++|+|++|+.++||+.|++|+++||.++++
T Consensus 549 ~~~~~LeiNp~hplI~~L~~~~--d--~~~~~~~~~~Lyd~AlL~~G~~~~d~~~~~~r~~~ll~~~~~ 613 (613)
T PRK05218 549 ESKPILEINPNHPLVKKLADEA--D--EAKFKDLAELLYDQALLAEGGSLEDPAAFVKRLNELLLKLLA 613 (613)
T ss_pred ccceEEEEcCCCHHHHHHHhcc--C--hHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhhC
Confidence 4789999999999999998732 2 334999999999999999999999999999999999998764
No 7
>PF00183 HSP90: Hsp90 protein; InterPro: IPR001404 Molecular chaperones, or heat shock proteins (Hsps) are ubiquitous proteins that act to maintain proper protein folding within the cell []. They assist in the folding of nascent polypeptide chains, and are also involved in the re-folding of denatured proteins following proteotoxic stress. As their name implies, the heat shock proteins were first identified as proteins that were up-regulated under conditions of elevated temperature. However, subsequent studies have shown that increased Hsp expression is induced by a variety of cellular stresses, including oxidative stress and inflammation. Five major Hsp families have been determined, and are categorized according to their molecular size (Hsp100, Hsp90, Hsp70, Hsp60, and the small Hsps). Hsps are involved in a variety of cellular processes that are ATP-dependent. These include: prevention of protein aggregation, protein degradation, protein trafficking, and maintenance of signalling proteins in a conformation that permits activation. Hsp90 chaperones are unique in their ability to regulate a specific subset of cellular signalling proteins that have been implicated in disease processes, including intracellular protein kinases, steroid hormone receptors, and growth factor receptors [].; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding, 0006950 response to stress; PDB: 3K99_D 2H55_A 3RLP_A 1OSF_A 3R4M_A 1YES_A 1UY9_A 3FT8_A 2YE2_A 2QF6_A ....
Probab=100.00 E-value=1.7e-137 Score=1181.83 Aligned_cols=500 Identities=58% Similarity=1.000 Sum_probs=422.5
Q ss_pred ccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhhhhhhhcccCC-CCccc-cccccCCCcccc
Q 003458 259 EYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKSESE-SEDED-EDSEKKPKTKTV 336 (818)
Q Consensus 259 e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~k~~ 336 (818)
+||++++|++||+|||+||+|||++|..+++++++++++++.++++.+ ++++..+++... +++.+ +.++++|+++++
T Consensus 1 eyl~~~klk~lvkkyS~Fi~~PI~l~~~k~~~~ev~~ee~~~~~~~~~-~~~~~~~~~~~~e~~~~eee~~~~~~k~k~~ 79 (531)
T PF00183_consen 1 EYLEEYKLKELVKKYSQFISFPIYLWVEKEEEKEVPDEEEEEEEEEKE-EEEKKEEEEEKVEEEDEEEEKEEKKPKTKKV 79 (531)
T ss_dssp GGGSHHHHHHHHHHHHTTSSSEEEEEEEEEEECCCEHHHHHH---HTT--TT--------SSEEEE----S-TTEEEEEC
T ss_pred CcccHHHHHHHHHhhccccccceeEeeeccccccCCcchhhhhhhhhh-hcccccccccccccccccccccccccccccc
Confidence 599999999999999999999999999998887776543221111100 000000011111 01111 223456888999
Q ss_pred eecccceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceeeEEEEEecCCCCcchhhhhhcc
Q 003458 337 KETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNT 416 (818)
Q Consensus 337 ~~~~~~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f~~llfiP~~~p~~~~~~~~~~ 416 (818)
++++|+|++||+++|||+|+|++||++||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|+.+ .
T Consensus 80 ~~~~~~~~~vN~~~piW~r~~~eit~eey~~Fyk~l~~~~--~~Pl~~iH~~~eg~~~~~~lLyiP~~~p~~~~~~~--~ 155 (531)
T PF00183_consen 80 KETVWEWEQVNTQKPIWTRDPKEITDEEYKEFYKSLSKDY--DDPLFWIHFNAEGPFEFKSLLYIPKRAPFDLFEND--K 155 (531)
T ss_dssp CEEEEEEEECS--S-GGGSSGGGS-HHHHHHHHHHHHTTS--S-ESEEEEEEEESSSEEEEEEEEESS-SCCCCSSS--T
T ss_pred ccceeecccccccCcccccchhccchHHHHHHHHHhhhcc--cCchhheeccccccceeeEEEEeCCCCchhhhhhh--h
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999999998763 4
Q ss_pred cccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhcCCCCcC
Q 003458 417 NKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDEST 496 (818)
Q Consensus 417 ~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~ 496 (818)
..++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||++|+||++++|++||++
T Consensus 156 ~~~~ikLY~rrVfI~d~~~~llP~~L~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~~~l~kkvl~~l~~l~~d------ 229 (531)
T PF00183_consen 156 KKNGIKLYVRRVFITDNFEELLPEYLRFVKGVVDSDDLPLNVSRETLQQNKLLKKIRKKLVKKVLDMLKKLAKD------ 229 (531)
T ss_dssp T--SEEEEETTEEEESSCGGSS-GGGTT-EEEEEESSS-SSCTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTS------
T ss_pred ccccceeeeecccccchhhcccchhhheeeeeeeccccCCccchhhhhccHHHHHHHHHHHHHHHHHHHHHhhh------
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred CCCcccccccCCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCcccCHHHHHhhccCCCceEEEE
Q 003458 497 GKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYI 576 (818)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYY~ 576 (818)
+++|.+||++||.+||+||++|..||++|++||||+||+++++++||++|++||+++|+.|||+
T Consensus 230 ----------------~e~y~~f~~~~g~~iK~G~~eD~~n~~kl~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYY~ 293 (531)
T PF00183_consen 230 ----------------REKYEKFWKEFGKFIKEGVIEDFKNREKLAKLLRFESSKSEGKLTSLDEYVERMKEGQKQIYYL 293 (531)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHH-GGGHHHHHTT-EEEETTTTTSEEEHHHHHHTS-TT-SEEEEE
T ss_pred ----------------HHHHHHHHHHHhHHHHhHHhhhhhhhhhcccceeeeccccccccccHHHhhhccccccccceEE
Confidence 5799999999999999999999999999999999999998889999999999999999999999
Q ss_pred eCCCHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccccCCCCc--ch--HHHHHHHHHHHHH
Q 003458 577 TGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKW 652 (818)
Q Consensus 577 tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~--~~~~~~~~~L~~~ 652 (818)
+|+|++++++|||+|+|++||||||||++|||+||||+|.+|+|++|+||++++++|++.+ +. +..+++|++|++|
T Consensus 294 ~g~s~~~~~~SP~lE~~k~kG~EVL~l~dpIDe~~i~~L~e~~gkkf~~I~ke~l~l~~~e~ek~~~e~~~~~~~~L~~~ 373 (531)
T PF00183_consen 294 TGESREEAEQSPYLEAFKKKGYEVLFLTDPIDEFVIQQLEEYEGKKFQSIDKEDLDLEEDEEEKKEDEELKEEFKPLTEW 373 (531)
T ss_dssp ESSSHHHHHTSGGGHHHHHCT--EEEE-SHHHHHHHHHHSEETTEEEEETTBSSSSSSTSHHHHHHHHHHHHHHHHHHHH
T ss_pred ecchHHHHhhccchhhHHhhCceEEEeCCchHHHHHHHHhhccccccccccccccccccchhhhhhhhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987543 23 6678899999999
Q ss_pred HHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhhhcccccceeeCCCChHHHHHHHhhccC
Q 003458 653 WKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD 732 (818)
Q Consensus 653 lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~~~~~kkiLEINp~HPlIk~L~~~~~~d 732 (818)
||++||++ |.+|++|.||++||||||++++|||++|+|||+||++++++++.++.+++||||||+||||++|++++..+
T Consensus 374 ~k~~L~~k-V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimkaqa~~~~~~~~~~~~kkiLEINp~HPLIk~L~~~~~~d 452 (531)
T PF00183_consen 374 LKELLGDK-VEKVKVSNRLVDSPAVLVSSEYGWSANMERIMKAQAMADMSMQEYMPSKKILEINPNHPLIKKLLKLVEKD 452 (531)
T ss_dssp HHHHHTTS-CSEEEE-SSSSSSSEEEEE-SSSB-HHHHHHHHHHHCCSTTTSSTSC--EEEEE-TTSHHHHHHHHHHHCC
T ss_pred HHhhhhhh-hheecccccccCCcceeecccchhHHHHHHHhhhhccccccccccccccceeecCCCCHHHHHHHhhhccc
Confidence 99999999 99999999999999999999999999999999999988776667888999999999999999999999888
Q ss_pred CCchhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCCCcccccC
Q 003458 733 PEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPDAAVEEE 786 (818)
Q Consensus 733 ~~d~~~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l~~~~~~~~~~~ 786 (818)
++++.++++|+||||+|+|++||.++||++|++|+++||.++||++.+++++++
T Consensus 453 ~~d~~~~~la~~LyD~AlL~~G~~l~dp~~F~~Ri~~lL~~~l~~~~~~~~~~~ 506 (531)
T PF00183_consen 453 EDDELAKDLAEQLYDTALLASGFELEDPAAFAKRINKLLEKSLGVDPDAEVEEE 506 (531)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHHHTTC--STTTTTTG
T ss_pred chhhHHHHHHHHHhhhhhhhcCCCcccHHHHHHHHHHHHHHhcCCCcCCccccc
Confidence 889999999999999999999999999999999999999999999999866554
No 8
>PRK14083 HSP90 family protein; Provisional
Probab=100.00 E-value=6.9e-132 Score=1147.26 Aligned_cols=575 Identities=23% Similarity=0.336 Sum_probs=507.2
Q ss_pred ccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEE-eCCCcEEEEEeCC
Q 003458 79 KFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL-DKEKKILSIRDRG 157 (818)
Q Consensus 79 ~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~-d~~~~~L~I~DNG 157 (818)
.+.||+|+++||++|+++||+||++|||||||||+|||+++|+.. + ..++.|+|.+ +.++++|+|+|||
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~---~-------~~~~~I~I~~~d~~~~~l~I~DnG 71 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALD---P-------TAPGRIRIELTDAGGGTLIVEDNG 71 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccC---C-------CCCceEEEEEccCCCcEEEEEeCC
Confidence 479999999999999999999999999999999999999987632 1 2346788877 8888999999999
Q ss_pred CCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeC-CCeeEEEEEcCCCceEEEe
Q 003458 158 IGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISE 236 (818)
Q Consensus 158 iGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~-~d~~~~W~s~~~~~f~i~~ 236 (818)
+|||++++.++|++||+||++.|. +. ..+.++||||||||||||||||+|+|+|++. +..++.|.+.++|.|+|..
T Consensus 72 iGmt~eel~~~l~~ig~S~k~~~~--~~-~~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~ 148 (601)
T PRK14083 72 IGLTEEEVHEFLATIGRSSKRDEN--LG-FARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRK 148 (601)
T ss_pred CCCCHHHHHHHHhhhccchhhhhh--hc-ccccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEe
Confidence 999999999999999999998763 21 2346799999999999999999999999997 5679999999999999997
Q ss_pred CCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhhhhhhhcc
Q 003458 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEEETEKS 316 (818)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (818)
.+ ++...+||+|+|+++++..+|+++++|++++++||.||+|||++++.
T Consensus 149 ~~-~~~~~~GT~I~L~l~~d~~~~~~~~~i~~li~~ys~~i~~pI~l~~~------------------------------ 197 (601)
T PRK14083 149 LE-TERAEPGTTVYLRPRPDAEEWLERETVEELAKKYGSLLPVPIRVEGE------------------------------ 197 (601)
T ss_pred CC-CCCCCCCCEEEEEecCchhhhccHHHHHHHHHHHhccCCCCcccCCc------------------------------
Confidence 53 34668999999999999999999999999999999999999999531
Q ss_pred cCCCCccccccccCCCcccceecccceeeccccCcccccCCCCCC--HHHHHHHHHhhhcCCCCCCCceeeeeeccccee
Q 003458 317 ESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVT--EEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVE 394 (818)
Q Consensus 317 ~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~ev~--~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~ 394 (818)
.++||+++|||+|+|++|| ++||.+|||.+++ ++||+|+||++||++.
T Consensus 198 --------------------------~~~iN~~~~lW~~~~~eit~~~eey~~Fyk~~~~----~~Pl~~ih~~~e~~~~ 247 (601)
T PRK14083 198 --------------------------KGGVNETPPPWTRDYPDPETRREALLAYGEELLG----FTPLDVIPLDVPSGGL 247 (601)
T ss_pred --------------------------eeeecCCCCCccCCccccCccHHHHHHHHHHhcC----CCchheeeecccchhh
Confidence 1479999999999999999 9999999999986 4799999999999986
Q ss_pred eEEEEE-ecCCCCcchhhhhhcccccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHH
Q 003458 395 FKAVLF-VPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIK 473 (818)
Q Consensus 395 f~~llf-iP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~ 473 (818)
+++|| ||..+|++ ..++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||
T Consensus 248 -~~~Ly~iP~~~~~~--------~~~~v~LY~~rVfI~d~~~~lLP~wl~FvrGVVDS~DLpLNvSRE~LQ~~~~l~~ir 318 (601)
T PRK14083 248 -EGVAYVLPYAVSPA--------ARRKHRVYLKRMLLSEEAENLLPDWAFFVRCVVNTDELRPTASREALYEDDALAAVR 318 (601)
T ss_pred -eEEEEecCCCCCcc--------ccCceEEEeeeeEeecchhhhhHHHHHHheeeeecCCCCCccCHHHHccCHHHHHHH
Confidence 67777 68888863 256999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCC
Q 003458 474 KKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSD 553 (818)
Q Consensus 474 k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~ 553 (818)
+.|++|++++|+++|++ +|++|.+||++||.+||+||++|.+|+++|++||||+||++
T Consensus 319 ~~i~kki~~~L~~la~~---------------------d~e~y~~f~~~~g~~lK~g~~~D~~~~~~l~~lL~f~ss~~- 376 (601)
T PRK14083 319 EELGEAIRKWLIGLATT---------------------DPERLRRLLAVHHLGVKALASHDDELLRLILPWLPFETTDG- 376 (601)
T ss_pred HHHHHHHHHHHHHHHhh---------------------CHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhceeecCCC-
Confidence 99999999999999998 89999999999999999999999999999999999999985
Q ss_pred CcccCHHHHHhhccCCCceEEEEeCC-CHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhh-cCCCceEeeccccc
Q 003458 554 GKLTSLDQYISRMKAGQKDIFYITGA-NKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMD-YEDKKFQNVSKEGL 631 (818)
Q Consensus 554 ~~~~SL~eYv~rmke~Qk~IYY~tg~-s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~e-f~gkkf~~V~k~~~ 631 (818)
.+||++|++|| +.|||++|. +++++. +.|++||+|||+|++||||+++++|.+ |+|++|++|+++++
T Consensus 377 --~~sL~eY~~r~----~~IyY~~~~~~~~~~~-----~~~~~kg~eVl~~~~~iDe~~l~~l~~~~~~~~~~~v~~~~~ 445 (601)
T PRK14083 377 --RMTLAEIRRRH----GVIRYTSSVDEFRQLA-----PIARAQGMGVINGGYTYDSELLERLPRLRPGLTVERLDPAEL 445 (601)
T ss_pred --CcCHHHHHHhC----CeEEEEcCHHHHHHHH-----HHHHHCCCeEEEeCCccHHHHHHHHHhhCCCCcEEEechhhh
Confidence 59999999996 589999996 788776 799999999999999999999999999 99999999999877
Q ss_pred c--CCCCcchHHHHHHHHHHHHHHHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhc-cccc-------
Q 003458 632 K--LGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQT-LSDA------- 701 (818)
Q Consensus 632 ~--l~~~ek~~~~~~~~~~L~~~lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa-~~d~------- 701 (818)
. +...+ ...++++++|++|++++|+++.|+.|++|.||+++|||||+++ +++|+|+|++.. ..++
T Consensus 446 ~~~~~~~~--~~~~~~~~~l~~~~~~~L~~~~~~v~~~s~rl~~~Pa~~v~~e---~~~~~~~m~~~~~~~~~~~~~~l~ 520 (601)
T PRK14083 446 TDRLEPLT--PEEELALRPFLAEAREVLAPFGCDVVIRHFEPADLPALYLHDR---AAQHSREREEAVEEADDLWADILG 520 (601)
T ss_pred hhhccccc--hhhHHHHHHHHHHHHHHhCccceEEEEEcCCCCCCCEEEEeCc---hhHHHHHHHhhhhhcccchhhhhh
Confidence 4 43212 3345689999999999999973555588999999999999988 446777775321 1110
Q ss_pred -hhhhhcccccceeeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHhhcCCC
Q 003458 702 -SKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLN--DPKDFASRIYSTVKSSLNIS 778 (818)
Q Consensus 702 -~~~~~~~~kkiLEINp~HPlIk~L~~~~~~d~~d~~~~~~a~~Lyd~AlL~sG~~l~--D~~~fa~ri~~ll~~~l~~~ 778 (818)
+.+.+...+++|||||+||||++|..+ .+.+.++++|++||++|+|.+|+.++ +|+.|+.++++||..+|+-+
T Consensus 521 ~~~~~~~~~~~~LeiN~~hpli~~l~~~----~d~~~~~~~~~~Lyd~AlL~~g~~l~~~e~~~~~~~~~~l~~~~l~~~ 596 (601)
T PRK14083 521 SLDESQPAPRARLVLNLRNPLVRRLATL----GDPKLLSRAVEALYVQALLLGHRPLRPAEMALLNRSLLGLLELALDAD 596 (601)
T ss_pred hhhhcccccCeEEEECCCCHHHHHHHhc----cChHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 011344578999999999999999774 34567899999999999999998888 99999999999999888653
No 9
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.63 E-value=4.2e-16 Score=150.52 Aligned_cols=101 Identities=39% Similarity=0.582 Sum_probs=76.1
Q ss_pred CCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEe-CCCcEEEEEeCCCCCCHHHHHHHHHHHhccC
Q 003458 98 YSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTIAKSG 176 (818)
Q Consensus 98 Ys~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg 176 (818)
|+. ..+|+|||+||+||.++ .+.|.|..+ .....|.|.|||.||+.++|.. +++++.|.
T Consensus 1 y~~-~~al~ElI~Ns~DA~a~------------------~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s~ 60 (137)
T PF13589_consen 1 YSP-EDALRELIDNSIDAGAT------------------NIKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRSS 60 (137)
T ss_dssp -SC-THHHHHHHHHHHHHHHH------------------HEEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHTH
T ss_pred CcH-HHHHHHHHHHHHHccCC------------------EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCCC
Confidence 666 89999999999999974 245666655 3458999999999999999998 77898886
Q ss_pred chhHHHhhhhcCCCCcccccccc-ceeeeeeccEEEEEEeeCCCe-eEEEE
Q 003458 177 TSAFVEKMQTSGDLNLIGQFGVG-FYSVYLVADYVEVISKHNDDK-QYVWE 225 (818)
Q Consensus 177 ~~~f~~~l~~~~~~~~IGqFGIG-F~S~F~VadkV~V~Sk~~~d~-~~~W~ 225 (818)
+... .....+|+||+| ++|+|+++++++|+|++.+.. .+.|.
T Consensus 61 k~~~-------~~~~~~G~~G~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~ 104 (137)
T PF13589_consen 61 KKSE-------KDRQSIGRFGIGLKLAIFSLGDRVEVISKTNGESFTYTID 104 (137)
T ss_dssp HHHH-------HHGGGGGGGTSGCGGGGGGTEEEEEEEEESTTSSSEEEEE
T ss_pred CCch-------hhhhcCCCcceEHHHHHHHhcCEEEEEEEECCCCcEEEEE
Confidence 6421 123569999999 889999999999999997433 44443
No 10
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.36 E-value=3e-12 Score=139.82 Aligned_cols=162 Identities=22% Similarity=0.315 Sum_probs=107.5
Q ss_pred HcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCc-EEEEEeCCCCCCHHHHHHHHHHHh
Q 003458 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK-ILSIRDRGIGMTKEDLIKNLGTIA 173 (818)
Q Consensus 95 ~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~-~L~I~DNGiGMT~~dL~~~LgtIa 173 (818)
.....++..+|+|||+||.||.+ . .|.|.+..++. .|+|.|||.||+.+++...+...+
T Consensus 17 ~~~i~~~~~~l~eLi~Na~dA~a------------------~--~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ 76 (312)
T TIGR00585 17 GEVIERPASVVKELVENSLDAGA------------------T--RIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHA 76 (312)
T ss_pred cCchhhHHHHHHHHHHHHHHCCC------------------C--EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCC
Confidence 55677899999999999999863 1 34444444444 599999999999999986544433
Q ss_pred ccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEee-C-CCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEE
Q 003458 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKH-N-DDKQYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (818)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~-~-~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L 251 (818)
.|....+. .+ ......|.+|.|++|...+| +|+|+|++ . ++.++.|...|. .+.... .....+||+|++
T Consensus 77 tsk~~~~~-~~---~~~~~~G~rG~al~si~~~s-~~~i~S~~~~~~~~~~~~~~~g~---~~~~~~-~~~~~~GTtV~v 147 (312)
T TIGR00585 77 TSKIQSFE-DL---ERIETLGFRGEALASISSVS-RLTITTKTSAADGLAWQALLEGG---MIEEIK-PAPRPVGTTVEV 147 (312)
T ss_pred cCCCCChh-Hh---hcccccCccchHHHHHHhhC-cEEEEEeecCCCcceEEEEECCC---cCcccc-cccCCCccEEEE
Confidence 33222221 11 23456899999999999998 89999997 4 455788875443 222211 134579999999
Q ss_pred E-ec---ccccccc-----cHHHHHHHHHHhc---CCCCcceEEee
Q 003458 252 H-LR---DEAGEYL-----EESKLKELVKKYS---EFINFPIYIWA 285 (818)
Q Consensus 252 ~-Lk---~~~~e~l-----~~~~l~~lv~kys---~fi~~PI~l~~ 285 (818)
. |- +..+.|+ +-..++.++.+|+ ..|.|.++..+
T Consensus 148 ~~lf~n~p~r~~~~~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~ 193 (312)
T TIGR00585 148 RDLFYNLPVRRKFLKSPKKEFRKILDLLNRYALIHPDVSFSLTHDG 193 (312)
T ss_pred chhhccCchhhhhccCcHHHHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 6 10 1111122 2467899999998 55667777643
No 11
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.23 E-value=3.4e-11 Score=133.88 Aligned_cols=134 Identities=24% Similarity=0.376 Sum_probs=93.5
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEe-CCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f 180 (818)
...+||||.||.|||+.. ++ .|.+.|+|... .+..++.|.|||+|++.+.+.+.||++..+++ |
T Consensus 38 ~~tv~ElV~NSLDA~eea--------GI-----LPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSK--f 102 (538)
T COG1389 38 TTTVHELVTNSLDACEEA--------GI-----LPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSK--F 102 (538)
T ss_pred HHHHHHHHhcchhhHHhc--------CC-----CCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccch--h
Confidence 458999999999999842 22 35666666543 44567999999999999999999999988765 3
Q ss_pred HHhhhhcCCCCccccccccceeeeeec-----cEEEEEEeeCC-CeeEEEEEc-----CCCceEEEe-CCCCCCCCCCcE
Q 003458 181 VEKMQTSGDLNLIGQFGVGFYSVYLVA-----DYVEVISKHND-DKQYVWESK-----ADGAFAISE-DTWNEPLGRGTE 248 (818)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~F~Va-----dkV~V~Sk~~~-d~~~~W~s~-----~~~~f~i~~-~~~~~~~~~GT~ 248 (818)
.. ..+..||+|||.-+|.|+| ..|.|.|+..+ +..+.++-. ..+.. +.. .......+|||+
T Consensus 103 h~------~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~I-v~r~~~~~~~~~hGT~ 175 (538)
T COG1389 103 HR------NIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEI-VERGEVENPGGWHGTR 175 (538)
T ss_pred hh------hhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchh-hhcccccCCCCCCceE
Confidence 21 2345699999997777654 78999998864 445443321 11211 111 111223479999
Q ss_pred EEEEecccc
Q 003458 249 IRLHLRDEA 257 (818)
Q Consensus 249 I~L~Lk~~~ 257 (818)
|.|+++..+
T Consensus 176 Vel~~~~~~ 184 (538)
T COG1389 176 VELELKGVW 184 (538)
T ss_pred EEEEecccc
Confidence 999999865
No 12
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=99.12 E-value=1.8e-09 Score=128.24 Aligned_cols=154 Identities=21% Similarity=0.349 Sum_probs=101.9
Q ss_pred HcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCC-cEEEEEeCCCCCCHHHHHHHHHHHh
Q 003458 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIA 173 (818)
Q Consensus 95 ~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~~dL~~~LgtIa 173 (818)
.....+|..+++|||.||.||.++ .|.|.+..++ ..|+|.|||.||+.+++...+...+
T Consensus 17 gevI~~~~svvkElveNsiDAgat--------------------~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~ 76 (617)
T PRK00095 17 GEVVERPASVVKELVENALDAGAT--------------------RIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHA 76 (617)
T ss_pred cCcccCHHHHHHHHHHHHHhCCCC--------------------EEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccC
Confidence 555678999999999999998741 4555554333 5799999999999999998776655
Q ss_pred ccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCC-CeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEE
Q 003458 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQYVWESKADGAFAISEDTWNEPLGRGTEIRLH 252 (818)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~-d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~ 252 (818)
.|....+ +.+. ...-.|..|.|+.|.-.|+ +++|+|++.+ ..+|.+.-.++....+.+ ....+||+|++.
T Consensus 77 tsKi~~~-~dl~---~~~t~GfrGeAL~sI~~vs-~l~i~s~~~~~~~~~~~~~~~G~~~~~~~----~~~~~GT~V~v~ 147 (617)
T PRK00095 77 TSKIASL-DDLE---AIRTLGFRGEALPSIASVS-RLTLTSRTADAAEGWQIVYEGGEIVEVKP----AAHPVGTTIEVR 147 (617)
T ss_pred CCCCCCh-hHhh---ccccCCcchhHHHhhhhce-EEEEEEecCCCCceEEEEecCCcCcceec----ccCCCCCEEEec
Confidence 5533221 1111 2245799999998888776 8999999864 346666544432222222 124799999995
Q ss_pred -e---cccccccc-----cHHHHHHHHHHhcCCC
Q 003458 253 -L---RDEAGEYL-----EESKLKELVKKYSEFI 277 (818)
Q Consensus 253 -L---k~~~~e~l-----~~~~l~~lv~kys~fi 277 (818)
| -+..+.|+ +-..|.++|.+|+-.-
T Consensus 148 ~LF~n~P~Rrkflk~~~~e~~~i~~~v~~~Al~~ 181 (617)
T PRK00095 148 DLFFNTPARRKFLKSEKTELGHIDDVVNRLALAH 181 (617)
T ss_pred hhhccCcHHHHhccCcHHHHHHHHHHHHHHhhcC
Confidence 0 11111222 3457888888887543
No 13
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.08 E-value=8.6e-10 Score=127.76 Aligned_cols=152 Identities=24% Similarity=0.325 Sum_probs=98.9
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEe---CCCcEEEEEeCCCCCCHHHHHHHHHHHhccCch
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD---KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d---~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~ 178 (818)
...|+|||+||.||++.. +..+.+.|.+... .+...|+|.|||+||+.+++...|+....+++
T Consensus 38 ~qVLkNLIeNAIDa~~~~-------------gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK- 103 (535)
T PRK04184 38 YTTVKELVDNSLDACEEA-------------GILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSK- 103 (535)
T ss_pred HHHHHHHHHHHHHHhhhc-------------CCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccc-
Confidence 457899999999999631 1112345555442 22356999999999999999988877544322
Q ss_pred hHHHhhhhcCCCCccccccccceeeeeecc-----EEEEEEeeCCCe-eEEEEEc-----CCCceEEEeCCCCCCCCCCc
Q 003458 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWESK-----ADGAFAISEDTWNEPLGRGT 247 (818)
Q Consensus 179 ~f~~~l~~~~~~~~IGqFGIGF~S~F~Vad-----kV~V~Sk~~~d~-~~~W~s~-----~~~~f~i~~~~~~~~~~~GT 247 (818)
|. ......|++|+|+.++.+++. .+.|.|+..++. ++.++-. ..+. .+.........++||
T Consensus 104 -~~------~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~-i~~~~~~~~~~~~GT 175 (535)
T PRK04184 104 -FH------NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPI-ILEREEVDWDRWHGT 175 (535)
T ss_pred -cc------ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCe-eccccccCCCCCCCE
Confidence 10 112456999999999988865 589999886544 4544432 1221 111111112357999
Q ss_pred EEEEEecccccccccHHHHHHHHHHhcCCC
Q 003458 248 EIRLHLRDEAGEYLEESKLKELVKKYSEFI 277 (818)
Q Consensus 248 ~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi 277 (818)
+|.+.+..... ....++.++|++++-.-
T Consensus 176 ~V~V~l~~~~~--~~~~~I~e~i~r~Al~n 203 (535)
T PRK04184 176 RVELEIEGDWY--RAKQRIYEYLKRTAIVN 203 (535)
T ss_pred EEEEEECCcCh--hhHHHHHHHHHHHHHhC
Confidence 99999886543 22688899999887543
No 14
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=99.06 E-value=2.8e-10 Score=135.04 Aligned_cols=149 Identities=21% Similarity=0.308 Sum_probs=107.4
Q ss_pred cCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcE-EEEEeCCCCCCHHHHHHHHHHHhc
Q 003458 96 SLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKI-LSIRDRGIGMTKEDLIKNLGTIAK 174 (818)
Q Consensus 96 sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~-L~I~DNGiGMT~~dL~~~LgtIa~ 174 (818)
..-..|..++||||.||.||.+ .+|+|.++.++.. |.|+|||+||+++||.-.+.+.|.
T Consensus 19 EVIerPaSVVKELVENSlDAGA--------------------t~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaT 78 (638)
T COG0323 19 EVIERPASVVKELVENSLDAGA--------------------TRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHAT 78 (638)
T ss_pred ceeecHHHHHHHHHhcccccCC--------------------CEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhcc
Confidence 3445789999999999999985 2688888877765 999999999999999999999998
Q ss_pred cCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCC-CeeEEEEEcCCCce-EEEeCCCCCCCCCCcEEEEE
Q 003458 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHND-DKQYVWESKADGAF-AISEDTWNEPLGRGTEIRLH 252 (818)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~-d~~~~W~s~~~~~f-~i~~~~~~~~~~~GT~I~L~ 252 (818)
|.-+.+-. |. ...-.|..|=.+.|.-.| .+++|+|+..+ ..++.|...|++.- ++.+. ....||+|.+.
T Consensus 79 SKI~~~~D-L~---~I~TlGFRGEAL~SIasV-srlti~Srt~~~~~~~~~~~~g~~~~~~~~p~----a~~~GTtVeV~ 149 (638)
T COG0323 79 SKIASLED-LF---RIRTLGFRGEALASIASV-SRLTITSRTAEASEGTQIYAEGGGMEVTVKPA----AHPVGTTVEVR 149 (638)
T ss_pred ccCCchhH-HH---HhhccCccHHHHHHHHhh-heeEEEeecCCcCceEEEEecCCcccccccCC----CCCCCCEEEeh
Confidence 86544311 11 122345555566666666 78999999764 45777777766432 33332 33559999993
Q ss_pred ------------ecccccccccHHHHHHHHHHhcCC
Q 003458 253 ------------LRDEAGEYLEESKLKELVKKYSEF 276 (818)
Q Consensus 253 ------------Lk~~~~e~l~~~~l~~lv~kys~f 276 (818)
+|....| -..+.++|++|+-.
T Consensus 150 dLF~NtPaRrKflks~~~E---~~~i~~vv~r~ALa 182 (638)
T COG0323 150 DLFYNTPARRKFLKSEKTE---FGHITELINRYALA 182 (638)
T ss_pred HhhccChHHHHhhcccHHH---HHHHHHHHHHHHhc
Confidence 5555544 47889999999853
No 15
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=98.95 E-value=5e-09 Score=120.34 Aligned_cols=151 Identities=23% Similarity=0.364 Sum_probs=95.7
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCC-CcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~ 181 (818)
..++|||.||+||++.. +..+.+.|.+..... ...|+|.|||.||+.+++...|+...++++. .
T Consensus 31 ~VlkELVeNAIDA~~~~-------------g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~--~ 95 (488)
T TIGR01052 31 TVIHELVTNSLDACEEA-------------GILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKF--H 95 (488)
T ss_pred HHHHHHHHHHHHHhhcc-------------CCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCcc--c
Confidence 47899999999998621 111233444432222 2379999999999999999888775544331 0
Q ss_pred HhhhhcCCCCccccccccceeeeeecc-----EEEEEEeeCCCe-eEEEEEc-----CCCceEEEeCCCCCCCCCCcEEE
Q 003458 182 EKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWESK-----ADGAFAISEDTWNEPLGRGTEIR 250 (818)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~F~Vad-----kV~V~Sk~~~d~-~~~W~s~-----~~~~f~i~~~~~~~~~~~GT~I~ 250 (818)
......|++|+|+.++.+++. .++|+|+..+.. ++.++.. ..|.. +...+.+...++||+|+
T Consensus 96 ------~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i-~~~~~~~~~~~~GT~V~ 168 (488)
T TIGR01052 96 ------RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEI-VEKGEWNKPGWRGTRIE 168 (488)
T ss_pred ------cccccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCee-cceeecCCCCCCceEEE
Confidence 123445999999999988886 499999987543 4444432 12221 11111122225899999
Q ss_pred EEecccccccccHHHHHHHHHHhcCC
Q 003458 251 LHLRDEAGEYLEESKLKELVKKYSEF 276 (818)
Q Consensus 251 L~Lk~~~~e~l~~~~l~~lv~kys~f 276 (818)
+.+......+ ...++.+++++|+-.
T Consensus 169 v~f~~~~~r~-~k~~i~e~l~~~Al~ 193 (488)
T TIGR01052 169 LEFKGVSYRR-SKQGVYEYLRRTAVA 193 (488)
T ss_pred EEECCceeec-cHHHHHHHHHHHHhh
Confidence 9865533211 357899999988754
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=98.81 E-value=1.8e-08 Score=119.53 Aligned_cols=149 Identities=21% Similarity=0.305 Sum_probs=96.0
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..|+|||.||+||+.. .+ ..+.+.|.|........|+|.|||.||+++++...|...+++++ |.
T Consensus 49 tVLkNLIeNALDAs~~--------~g-----ilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSK--f~- 112 (795)
T PRK14868 49 TAVKEAVDNALDATEE--------AG-----ILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSR--FH- 112 (795)
T ss_pred HHHHHHHHHHHHhCcc--------cC-----CCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhccccc--cc-
Confidence 4688999999999852 01 11233444433222246999999999999999998887775433 21
Q ss_pred hhhhcCCCCccccccccceeeeeecc-----EEEEEEeeCCC-eeEEEEE--cCCC---ceEEEeCCCCCCCCCCcEEEE
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDD-KQYVWES--KADG---AFAISEDTWNEPLGRGTEIRL 251 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~Vad-----kV~V~Sk~~~d-~~~~W~s--~~~~---~f~i~~~~~~~~~~~GT~I~L 251 (818)
....-.|+.|+|+-++.+++. .+.|+|+..+. .++.|.- +++. ........ ....++||+|++
T Consensus 113 -----~~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~-~~~~~~GT~IeV 186 (795)
T PRK14868 113 -----AREQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETT-TWDRPHGTRIEL 186 (795)
T ss_pred -----ccccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceec-ccCCCCceEEEE
Confidence 111335899999999888875 48999998643 4554443 2221 21111111 123579999999
Q ss_pred EecccccccccHHHHHHHHHHhcCC
Q 003458 252 HLRDEAGEYLEESKLKELVKKYSEF 276 (818)
Q Consensus 252 ~Lk~~~~e~l~~~~l~~lv~kys~f 276 (818)
.|.-. |....++.++|++++--
T Consensus 187 ~Lf~N---~pAR~kI~eyl~r~Al~ 208 (795)
T PRK14868 187 EMEAN---MRARQQLHDYIKHTAVV 208 (795)
T ss_pred EEEcc---CchhhhHHHHHHHHHhh
Confidence 98643 34467788888887643
No 17
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=98.40 E-value=1.2e-06 Score=103.83 Aligned_cols=149 Identities=19% Similarity=0.258 Sum_probs=87.2
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCC-CcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~ 181 (818)
..++|||.||.||+... +..+.+.|.|..... .-.|+|.|||.||+.+++...|+..-.+++ |.
T Consensus 39 ~VVkELVeNAIDA~~~~-------------g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK--~~ 103 (659)
T PRK14867 39 TIIHELVTNSLDACEEA-------------EILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSK--MH 103 (659)
T ss_pred HHHHHHHHHHHHHhhcc-------------CCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCc--cc
Confidence 46899999999998621 111234444433222 235999999999999999988876432211 11
Q ss_pred HhhhhcCCCCccccccccceeeeeeccE-----EEEEEeeCCCeeE--EEEEc---CCCceEEEeCCCCCCCCCCcEEEE
Q 003458 182 EKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDDKQY--VWESK---ADGAFAISEDTWNEPLGRGTEIRL 251 (818)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~F~Vadk-----V~V~Sk~~~d~~~--~W~s~---~~~~f~i~~~~~~~~~~~GT~I~L 251 (818)
.-....|++|+|+.++-+++.. +.|.|+..++..+ .|..+ .+|...-... ....++||+|++
T Consensus 104 ------~~~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~~~--~~~~~~GT~Ie~ 175 (659)
T PRK14867 104 ------RLIQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSHKV--REGFWRGTRVEG 175 (659)
T ss_pred ------ceeccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeeccccc--CCCCCCCcEEEE
Confidence 0123458999999888766644 6888887544432 22221 1222211111 123479999997
Q ss_pred EecccccccccHHHHHHHHHHhcC
Q 003458 252 HLRDEAGEYLEESKLKELVKKYSE 275 (818)
Q Consensus 252 ~Lk~~~~e~l~~~~l~~lv~kys~ 275 (818)
.+++-...- .+..+.++|++++-
T Consensus 176 ~V~dLFynR-~E~~i~e~l~r~AL 198 (659)
T PRK14867 176 EFKEVTYNR-REQGPFEYLRRISL 198 (659)
T ss_pred EEeeceech-hhHHHHHHHHHHHH
Confidence 665421111 13347888888774
No 18
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=98.35 E-value=9.9e-07 Score=105.22 Aligned_cols=158 Identities=20% Similarity=0.214 Sum_probs=98.5
Q ss_pred chhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH--------HHHHH
Q 003458 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTI 172 (818)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~--------~LgtI 172 (818)
+...++|||-||.|++.. + .-..|.|.++.+ ..|+|.|||.||+.+.... .|+++
T Consensus 38 l~~lv~EivdNaiDe~~a--------------g--~a~~I~V~i~~d-g~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~l 100 (631)
T PRK05559 38 LHHLVQEVIDNSVDEALA--------------G--HGKRIEVTLHAD-GSVSVRDNGRGIPVGIHPEEGKSGVEVILTKL 100 (631)
T ss_pred hhhhhhhhhccccchhhc--------------C--CCCEEEEEEeCC-CcEEEEEcCCCCCcccccccCCcchheeeeec
Confidence 456899999999999731 1 123567766655 4899999999999988876 56554
Q ss_pred hccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCe-eEEEEEcCCCceEEEeCCCCCCCCCCcEEEE
Q 003458 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (818)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~-~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L 251 (818)
-.+|+ |-. .......|..|+|..++=.++.+++|.|+..+.. ...|+ .|...-.+..........+||+|+.
T Consensus 101 hagsK--f~~----~~yk~SgGl~GvGls~vNalS~~l~V~s~r~g~~~~~~f~-~G~~~~~l~~~~~~~~~~~GT~V~f 173 (631)
T PRK05559 101 HAGGK--FSN----KAYKFSGGLHGVGVSVVNALSSRLEVEVKRDGKVYRQRFE-GGDPVGPLEVVGTAGKRKTGTRVRF 173 (631)
T ss_pred cccCc--cCC----ccccccCcccccchhhhhhheeeEEEEEEeCCeEEEEEEE-CCcCccCccccccccCCCCCcEEEE
Confidence 33332 211 1112457999999999999999999999976532 33443 2211111111111111468999999
Q ss_pred Eecccc--cccccHHHHHHHHHHhcCCCCcceEE
Q 003458 252 HLRDEA--GEYLEESKLKELVKKYSEFINFPIYI 283 (818)
Q Consensus 252 ~Lk~~~--~e~l~~~~l~~lv~kys~fi~~PI~l 283 (818)
.....- ..-++...|.+.++.++- ++--|.+
T Consensus 174 ~PD~~iF~~~~~~~~~i~~~l~~~A~-lnpgl~i 206 (631)
T PRK05559 174 WPDPKIFDSPKFSPERLKERLRSKAF-LLPGLTI 206 (631)
T ss_pred EECHHHcCCcccCHHHHHHHHHHHHh-hCCCeEE
Confidence 653211 112356788888888874 4333443
No 19
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.29 E-value=8.5e-07 Score=81.36 Aligned_cols=81 Identities=28% Similarity=0.425 Sum_probs=59.0
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~ 181 (818)
...|.|||+||+++... ...+.|.+..+.+.-.|+|.|||.||+.+++...+.....+
T Consensus 7 ~~il~~ll~Na~~~~~~----------------~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~------ 64 (111)
T PF02518_consen 7 RQILSELLDNAIKHSPE----------------GGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTS------ 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHH----------------TSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHS------
T ss_pred HHHHHHHHHHHHHHhcC----------------CCEEEEEEEEecCeEEEEEEeccccccccccccchhhcccc------
Confidence 35789999999999863 13456666666667789999999999999988644322111
Q ss_pred HhhhhcCCCCccccccccceeeeeeccE
Q 003458 182 EKMQTSGDLNLIGQFGVGFYSVYLVADY 209 (818)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~F~Vadk 209 (818)
..+....+++|+|++.|..+++.
T Consensus 65 -----~~~~~~~~g~GlGL~~~~~~~~~ 87 (111)
T PF02518_consen 65 -----DKSETSISGHGLGLYIVKQIAER 87 (111)
T ss_dssp -----SSSSGGSSSSSHHHHHHHHHHHH
T ss_pred -----cccccccCCCChHHHHHHHHHHH
Confidence 11334567799999999888765
No 20
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=98.16 E-value=3.9e-06 Score=100.00 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=96.3
Q ss_pred chhHHHHhhhcHHH-HHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHH--------HHHHHHH
Q 003458 101 KDIFLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGT 171 (818)
Q Consensus 101 ~~ifLRELIqNA~D-A~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~d--------L~~~Lgt 171 (818)
+...+.|||.||.| |++ +. --.|.|.++.+ ..|+|.|||.||+.++ +.-.|++
T Consensus 31 ~~~lv~ElvdNsiDE~~a---------------g~--a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~ 92 (625)
T TIGR01055 31 PNHLVQEVIDNSVDEALA---------------GF--ASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVEVILTT 92 (625)
T ss_pred cceeehhhhhcccchhhc---------------CC--CCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHHHhhhc
Confidence 46799999999999 221 01 12566666655 7899999999999988 5545544
Q ss_pred HhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCc-eEEEeCCCCCCCCCCcEEE
Q 003458 172 IAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEIR 250 (818)
Q Consensus 172 Ia~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~-f~i~~~~~~~~~~~GT~I~ 250 (818)
.-.+|+ | ....-....|.-|+|..|+=.++.+++|.|++.+.. |.+.-.++.. -.+..........+||+|+
T Consensus 93 lhagsK--~----~~~~~~~SgG~~GvGls~vnalS~~l~v~~~r~g~~-~~~~~~~G~~~~~~~~i~~~~~~~~GT~V~ 165 (625)
T TIGR01055 93 LHAGGK--F----SNKNYHFSGGLHGVGISVVNALSKRVKIKVYRQGKL-YSIAFENGAKVTDLISAGTCGKRLTGTSVH 165 (625)
T ss_pred ccccCC--C----CCCcceecCCCcchhHHHHHHhcCeEEEEEEECCeE-EEEEEECCeEccccccccccCCCCCCeEEE
Confidence 433332 2 111112357999999999999999999999976543 4333332211 0111110111235899999
Q ss_pred EEecccc--cccccHHHHHHHHHHhcCCC-CcceEEe
Q 003458 251 LHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIW 284 (818)
Q Consensus 251 L~Lk~~~--~e~l~~~~l~~lv~kys~fi-~~PI~l~ 284 (818)
..-.... ..-.+...|.++++.++-.. ..-|.++
T Consensus 166 F~PD~~~F~~~~~e~~~i~~~l~~lA~lnpgi~~~l~ 202 (625)
T TIGR01055 166 FTPDPEIFDSLHFSVSRLYHILRAKAVLCRGVEIEFE 202 (625)
T ss_pred EEECHHHCCCCccCHHHHHHHHHHHHhhCCCcEEEEe
Confidence 8533211 01234577888888876543 2444554
No 21
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=98.14 E-value=2.6e-06 Score=101.08 Aligned_cols=153 Identities=20% Similarity=0.259 Sum_probs=90.9
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHH-------HHHHHHhccC
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKSG 176 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~-------~~LgtIa~Sg 176 (818)
.++|||.||+||... + .--.|.|.++.++ .|+|.|||.||+.+... +.+.++...|
T Consensus 5 ~v~ElvdNAiD~~~~--------------g--~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag 67 (594)
T smart00433 5 LVDEIVDNAADEALA--------------G--YMDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAG 67 (594)
T ss_pred EEeeehhcccchhcc--------------C--CCCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhccc
Confidence 578999999999741 1 1236777776654 99999999999853321 1122222222
Q ss_pred chhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCe-eEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 003458 177 TSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (818)
Q Consensus 177 ~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~-~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk~ 255 (818)
.+ | .+......-|..|+|..|+-.++.+++|.|+..+.. ...|+..|...-.+... +....+||+|+. .+
T Consensus 68 ~k-f----d~~~~k~s~G~~G~Gls~vnalS~~l~v~~~~~g~~~~~~~~~~G~~~~~~~~~--~~~~~~GT~V~F--~P 138 (594)
T smart00433 68 GK-F----DDDAYKVSGGLHGVGASVVNALSTEFEVEVARDGKEYKQSFSNNGKPLSEPKII--GDTKKDGTKVTF--KP 138 (594)
T ss_pred CC-C----CCCCccccCCcccchHHHHHHhcCceEEEEEeCCcEEEEEEeCCCeECccceec--CCCCCCCcEEEE--EE
Confidence 21 2 001112357999999999999999999999987433 23343223211001111 123478999995 34
Q ss_pred cccccc-----cHHHHHHHHHHhcCCCCcceEE
Q 003458 256 EAGEYL-----EESKLKELVKKYSEFINFPIYI 283 (818)
Q Consensus 256 ~~~e~l-----~~~~l~~lv~kys~fi~~PI~l 283 (818)
+..-|. +...|.+.++.++ +++--|.+
T Consensus 139 d~~~F~~~~~~~~~~i~~rl~~~A-~l~pgl~i 170 (594)
T smart00433 139 DLEIFGMTTDDDFELLKRRLRELA-FLNKGVKI 170 (594)
T ss_pred CHHHhCCcccchHHHHHHHHHHHH-hcCCCcEE
Confidence 443343 3467888888886 44333444
No 22
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=98.08 E-value=7e-06 Score=94.29 Aligned_cols=146 Identities=29% Similarity=0.380 Sum_probs=97.7
Q ss_pred CCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCC-cEEEEEeCCCCCCHHHHHHHHHHHhcc
Q 003458 97 LYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKS 175 (818)
Q Consensus 97 LYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~~dL~~~LgtIa~S 175 (818)
+-..|.-+|.|||-|+.||.. ..|.|.+-.++ +.|.|+|||.|+-++||.-..-+-+.|
T Consensus 24 VI~RP~NAlKEliENSLDA~S--------------------T~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTS 83 (694)
T KOG1979|consen 24 VIQRPVNALKELIENSLDANS--------------------TSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTS 83 (694)
T ss_pred hhhchHHHHHHHHhccccCCC--------------------ceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhh
Confidence 344688899999999999964 36777776555 457899999999999998655555655
Q ss_pred CchhHHHhhhhcCCCCccccccc---cceeeeeeccEEEEEEeeCCCe-eEEEEEcCCCceEEEeCCCCCCCCCCcEEEE
Q 003458 176 GTSAFVEKMQTSGDLNLIGQFGV---GFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (818)
Q Consensus 176 g~~~f~~~l~~~~~~~~IGqFGI---GF~S~F~VadkV~V~Sk~~~d~-~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L 251 (818)
.-..| .|...|..||. .+ ++..-+-+|+|+||..++. +|. .+..+|... ..|+.-.-..||.|++
T Consensus 84 KL~kF-------EDL~~lsTyGFRGEAL-ASiShVA~VtV~TK~~~~~cayr-asY~DGkm~--~~pKpcAgk~GT~I~v 152 (694)
T KOG1979|consen 84 KLTKF-------EDLFSLSTYGFRGEAL-ASISHVAHVTVTTKTAEGKCAYR-ASYRDGKMI--ATPKPCAGKQGTIITV 152 (694)
T ss_pred hcchh-------HHHHhhhhcCccHHHH-hhhhheeEEEEEEeecCceeeeE-EEeeccccc--cCCCCccCCCceEEEe
Confidence 44444 22233444444 33 4555557999999998655 332 234455433 2222223468999999
Q ss_pred E------------ecccccccccHHHHHHHHHHhcCC
Q 003458 252 H------------LRDEAGEYLEESKLKELVKKYSEF 276 (818)
Q Consensus 252 ~------------Lk~~~~e~l~~~~l~~lv~kys~f 276 (818)
. |+..++|| .+|-.+|.+|+-+
T Consensus 153 edLFYN~~~Rrkal~~~~EE~---~ki~dlv~ryAIH 186 (694)
T KOG1979|consen 153 EDLFYNMPTRRKALRNHAEEY---RKIMDLVGRYAIH 186 (694)
T ss_pred hHhhccCHHHHHHhcCcHHHH---HHHHHHHHHHhee
Confidence 3 66555555 7788999999865
No 23
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=97.99 E-value=1.1e-05 Score=96.81 Aligned_cols=154 Identities=19% Similarity=0.275 Sum_probs=90.6
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHH-------HHHHHHHhc
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL-------IKNLGTIAK 174 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL-------~~~LgtIa~ 174 (818)
...++|||-||.|-... + ..-.|.|.++.+ ..|+|.|||.||+.+-- .+.+.++..
T Consensus 32 ~~vv~Elv~NaiDe~~a--------------g--~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ 94 (654)
T TIGR01059 32 HHLVYEVVDNSIDEAMA--------------G--YCDTINVTINDD-GSVTVEDNGRGIPVDIHPEEGISAVEVVLTVLH 94 (654)
T ss_pred HhhhHHhhhcccccccc--------------C--CCCEEEEEEeCC-CcEEEEEeCCCcCccccCcCCCCchHHheeeec
Confidence 45788999999993310 1 112566666654 46999999999997511 011112222
Q ss_pred cCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceE-EEeCCCCCCCCCCcEEEEEe
Q 003458 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFA-ISEDTWNEPLGRGTEIRLHL 253 (818)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~-i~~~~~~~~~~~GT~I~L~L 253 (818)
+|.+ |- +.......|..|+|..|+=.++.+++|.|++.+.. |...-.++..-. +... +....+||+|+.+-
T Consensus 95 ag~k-f~----~~~~k~s~G~~G~gl~~inalS~~l~v~~~~~g~~-~~~~~~~G~~~~~l~~~--~~~~~~GT~V~F~p 166 (654)
T TIGR01059 95 AGGK-FD----KDSYKVSGGLHGVGVSVVNALSEWLEVTVFRDGKI-YRQEFERGIPLGPLEVV--GETKKTGTTVRFWP 166 (654)
T ss_pred ccCc-cC----CCcceecCCccchhHHHHHHhcCeEEEEEEECCeE-EEEEEeCCCcccCceec--cCCCCCCcEEEEEE
Confidence 2221 21 01112457999999999999999999999976533 333222221111 1111 23457899999553
Q ss_pred ccccccc----ccHHHHHHHHHHhcCCCCcceEE
Q 003458 254 RDEAGEY----LEESKLKELVKKYSEFINFPIYI 283 (818)
Q Consensus 254 k~~~~e~----l~~~~l~~lv~kys~fi~~PI~l 283 (818)
.+. -| .+...|.+.++.++ +++--|.+
T Consensus 167 dp~--~F~~~~~e~~~i~~rl~~~A-~l~pgl~i 197 (654)
T TIGR01059 167 DPE--IFETTEFDFDILAKRLRELA-FLNSGVKI 197 (654)
T ss_pred ChH--HhCCcccCHHHHHHHHHHhh-ccCCCeEE
Confidence 322 33 36688899999888 44434444
No 24
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=97.94 E-value=2.8e-05 Score=94.19 Aligned_cols=155 Identities=21% Similarity=0.323 Sum_probs=93.6
Q ss_pred hhHHHHhhhcHHH-HHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHH----------HHHHHHH
Q 003458 102 DIFLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE----------DLIKNLG 170 (818)
Q Consensus 102 ~ifLRELIqNA~D-A~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~----------dL~~~Lg 170 (818)
...++|+|.||.| |++ +. .-.|.|.++.+ ..|+|+|||.||+.+ |+. |+
T Consensus 39 hhlv~EivdNaiDE~~A---------------G~--a~~I~V~i~~d-gsIsV~DnGrGIPvd~h~~~g~~~~Elv--lt 98 (756)
T PRK14939 39 HHMVYEVVDNAIDEALA---------------GH--CDDITVTIHAD-GSVSVSDNGRGIPTDIHPEEGVSAAEVI--MT 98 (756)
T ss_pred hhhhhHhhccccccccc---------------CC--CCEEEEEEcCC-CeEEEEEcCCcccCCcccccCCchhhhe--ee
Confidence 4688999999999 321 11 13566766654 589999999999987 443 33
Q ss_pred HHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceE-EEeCCCCCCCCCCcEE
Q 003458 171 TIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFA-ISEDTWNEPLGRGTEI 249 (818)
Q Consensus 171 tIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~-i~~~~~~~~~~~GT~I 249 (818)
....|.+ |-. ..-.-.-|.-|+|..++=.++.+++|.|+..+.. |...-..+..-. +... +....+||+|
T Consensus 99 -~lhAggK-fd~----~~ykvSgGlhGvG~svvNAlS~~l~v~v~r~gk~-~~q~f~~G~~~~~l~~~--g~~~~~GT~V 169 (756)
T PRK14939 99 -VLHAGGK-FDQ----NSYKVSGGLHGVGVSVVNALSEWLELTIRRDGKI-HEQEFEHGVPVAPLKVV--GETDKTGTEV 169 (756)
T ss_pred -eecccCC-CCC----CcccccCCccCccceEeehccCeEEEEEEeCCeE-EEEEEecCccccCcccc--CCcCCCCcEE
Confidence 2222221 210 1111246999999999999999999999976533 333322221101 2221 2235689999
Q ss_pred EEEecccc--cccccHHHHHHHHHHhcCCCC--cceEEeec
Q 003458 250 RLHLRDEA--GEYLEESKLKELVKKYSEFIN--FPIYIWAS 286 (818)
Q Consensus 250 ~L~Lk~~~--~e~l~~~~l~~lv~kys~fi~--~PI~l~~~ 286 (818)
+......- ..-++...|...++.++ |++ .-|.+++.
T Consensus 170 ~F~PD~~iF~~~~~~~~~i~~rl~elA-~lnpgl~i~l~de 209 (756)
T PRK14939 170 RFWPSPEIFENTEFDYDILAKRLRELA-FLNSGVRIRLKDE 209 (756)
T ss_pred EEEECHHHcCCcccCHHHHHHHHHHHh-hcCCCCEEEEecc
Confidence 99533211 11236678888888887 454 44555543
No 25
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=97.92 E-value=2.7e-05 Score=93.28 Aligned_cols=147 Identities=18% Similarity=0.241 Sum_probs=87.6
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHH-------HHHHHHhcc
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKS 175 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~-------~~LgtIa~S 175 (818)
..++|||-||.|-... + ..-.|.|.++.+ +.|+|.|||.||+.+--. +.+.++..+
T Consensus 40 ~~v~ElvdNaiDe~~a--------------g--~a~~I~V~i~~~-g~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lha 102 (638)
T PRK05644 40 HLVYEIVDNSIDEALA--------------G--YCDHIEVTINED-GSITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHA 102 (638)
T ss_pred hhhHHhhhcccccccC--------------C--CCCEEEEEEeCC-CcEEEEEeCccccCCccCCCCCCchHHheeeecc
Confidence 4678999999994310 1 123567766654 489999999999986211 111222222
Q ss_pred CchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCce-EEEeCCCCCCCCCCcEEEEEec
Q 003458 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF-AISEDTWNEPLGRGTEIRLHLR 254 (818)
Q Consensus 176 g~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f-~i~~~~~~~~~~~GT~I~L~Lk 254 (818)
|.+ | .+....-..|..|+|..|+=.++.+++|+|+..+. .|...-.++..- .+... +.....||+|+..
T Consensus 103 g~k-f----d~~~yk~s~G~~G~Gls~vnalS~~~~v~t~r~g~-~~~~~~~~G~~~~~~~~~--~~~~~~GT~I~F~-- 172 (638)
T PRK05644 103 GGK-F----GGGGYKVSGGLHGVGVSVVNALSTWLEVEVKRDGK-IYYQEYERGVPVTPLEVI--GETDETGTTVTFK-- 172 (638)
T ss_pred cCc-c----CCCcccccCCccccchhhhhheeceEEEEEEeCCc-EEEEEEECCeEccCcccc--CCcCCCCcEEEEE--
Confidence 211 1 00111225799999999999999999999997643 443333322110 11111 2234689999964
Q ss_pred ccccc----cccHHHHHHHHHHhcCC
Q 003458 255 DEAGE----YLEESKLKELVKKYSEF 276 (818)
Q Consensus 255 ~~~~e----~l~~~~l~~lv~kys~f 276 (818)
++..- -++...|...++.++-.
T Consensus 173 Pd~~~F~~~~~e~~~i~~rl~~~A~l 198 (638)
T PRK05644 173 PDPEIFETTEFDYDTLATRLRELAFL 198 (638)
T ss_pred ECHHHcCCcccCHHHHHHHHHHHHhh
Confidence 33222 23567888888888743
No 26
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=97.87 E-value=1.4e-05 Score=93.70 Aligned_cols=133 Identities=20% Similarity=0.242 Sum_probs=82.2
Q ss_pred HHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeC-CCcEEEEEeCCCCCCHHHHHHHHH
Q 003458 92 IIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIGMTKEDLIKNLG 170 (818)
Q Consensus 92 ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~-~~~~L~I~DNGiGMT~~dL~~~Lg 170 (818)
|-+.+.-.+...+++|||-||.||.++ .|+|.++. +-..|.|.|||.|++..+..-.-.
T Consensus 12 I~S~qvI~sl~sAVKELvENSiDAGAT--------------------~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~l 71 (672)
T KOG1978|consen 12 ICSSQVITSLVSAVKELVENSIDAGAT--------------------AIDIKVKDYGSDSIEVSDNGSGISATDFEGLAL 71 (672)
T ss_pred cccCCeeccHHHHHHHHHhcCcccCCc--------------------eeeEecCCCCcceEEEecCCCCCCccchhhhhh
Confidence 444455556779999999999999863 46666544 336799999999999988874111
Q ss_pred HHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeC-CCeeEEEEEcCCCceEEEeCCCCCCCCCCcEE
Q 003458 171 TIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKADGAFAISEDTWNEPLGRGTEI 249 (818)
Q Consensus 171 tIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~-~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I 249 (818)
..-.|.-..|-. + ....-.|..|=.+ |+.+.-..|.|.|++. ...+..|.-+..|... ...+ -..++||+|
T Consensus 72 kh~TSKi~~f~D-l---~~l~T~GFRGEAL-SsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~-~k~~--~ar~~GTTV 143 (672)
T KOG1978|consen 72 KHTTSKIVSFAD-L---AVLFTLGFRGEAL-SSLCALGDVMISTRSHSAKVGTRLVYDHDGHII-QKKP--VARGRGTTV 143 (672)
T ss_pred hhhhhcccchhh-h---hhhhhhhhHHHHH-HhhhhccceEEEEeeccCccceeEEEccCCcee-eecc--ccCCCCCEE
Confidence 112222222311 0 0111223333333 6655556677888875 4458888888777644 2211 346899999
Q ss_pred EEE
Q 003458 250 RLH 252 (818)
Q Consensus 250 ~L~ 252 (818)
.+.
T Consensus 144 ~v~ 146 (672)
T KOG1978|consen 144 MVR 146 (672)
T ss_pred EHh
Confidence 984
No 27
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.21 E-value=0.0011 Score=57.24 Aligned_cols=86 Identities=23% Similarity=0.337 Sum_probs=56.9
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..++|||.||.++... ....+.|.+..+...-.|.|.|+|.||+...+...+...+.+
T Consensus 3 ~~~~~ll~Na~~~~~~---------------~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~------- 60 (103)
T cd00075 3 QVLLNLLSNAIKHTPE---------------GGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDG------- 60 (103)
T ss_pred HHHHHHHHHHHHhCcC---------------CCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcC-------
Confidence 4689999999998641 012355665555444578999999999999987655432111
Q ss_pred hhhhcCCCCccccccccceeeeeecc----EEEEEEe
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVAD----YVEVISK 215 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~Vad----kV~V~Sk 215 (818)
......+.+|+|++.+-.+++ .+.+.+.
T Consensus 61 -----~~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~ 92 (103)
T cd00075 61 -----SRSRKGGGTGLGLSIVKKLVELHGGRIEVESE 92 (103)
T ss_pred -----CCCCCCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 111234688999998877776 5555443
No 28
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=97.11 E-value=0.0002 Score=83.84 Aligned_cols=125 Identities=22% Similarity=0.261 Sum_probs=74.6
Q ss_pred chhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhH
Q 003458 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (818)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f 180 (818)
-.-.++||++|+.||.++ .|.|.++-..-.+.|.|+|+||+++||.. ||+--..++=.|
T Consensus 22 la~~VeElv~NSiDA~At--------------------~V~v~V~~~t~sv~ViDdG~G~~rdDl~~-lg~ry~TSK~h~ 80 (1142)
T KOG1977|consen 22 LAQCVEELVLNSIDAEAT--------------------CVAVRVNMETFSVQVIDDGFGMGRDDLEK-LGNRYFTSKCHS 80 (1142)
T ss_pred HHHHHHHHHhhccccCce--------------------EEEEEecCceeEEEEEecCCCccHHHHHH-HHhhhhhhhcee
Confidence 356899999999999863 34555566778899999999999999974 554322222112
Q ss_pred HHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCC-eeEEE--EEcCCCceEEEeCCCCCCCCCCcEEEEE
Q 003458 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVW--ESKADGAFAISEDTWNEPLGRGTEIRLH 252 (818)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d-~~~~W--~s~~~~~f~i~~~~~~~~~~~GT~I~L~ 252 (818)
...+ ......|-.|=.++|.--++.-+ |+|+..+. .+|.- .-.|...-.+..+ ..+...||+|+++
T Consensus 81 ~ndl---~~~~tyGfRGeALasIsd~s~l~-v~skkk~r~~~~~~kk~~~gs~~~~l~iD--~~R~~sGTtVtV~ 149 (1142)
T KOG1977|consen 81 VNDL---ENPRTYGFRGEALASISDMSSLV-VISKKKNRTMKTFVKKFQSGSALKALEID--VTRASSGTTVTVY 149 (1142)
T ss_pred cccc---ccccccccchhhhhhhhhhhhhh-hhhhhcCCchhHHHHHHhccccceecccc--cccccCCcEEEeH
Confidence 2222 12345677777777766665444 55655432 23321 1112111122222 2456789999996
No 29
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=96.97 E-value=0.00088 Score=73.50 Aligned_cols=101 Identities=21% Similarity=0.355 Sum_probs=59.8
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..+..||+||..+. .....+.|.+..+.+...|+|.|||.||+++++...+. .+.+
T Consensus 250 ~il~nLi~NA~k~~----------------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~----~f~~---- 305 (356)
T PRK10755 250 LLLRNLVENAHRYS----------------PEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSK----AFVR---- 305 (356)
T ss_pred HHHHHHHHHHHhhC----------------CCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCC----CeEe----
Confidence 35777888876542 11234566665555556799999999999999875332 1110
Q ss_pred hhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk~ 255 (818)
. + ..-|.+|+|++-|-.+++. + +|.+.+...+ ...||+|++.+..
T Consensus 306 ----~-~-~~~~g~GlGL~i~~~i~~~------~------------gg~i~i~s~~----~~~Gt~~~i~~p~ 350 (356)
T PRK10755 306 ----M-D-SRYGGIGLGLSIVSRITQL------H------------HGQFFLQNRQ----ERSGTRAWVWLPK 350 (356)
T ss_pred ----C-C-CCCCCcCHHHHHHHHHHHH------C------------CCEEEEEECC----CCCeEEEEEEecC
Confidence 0 0 1125689999776555432 1 1234444321 1268999998864
No 30
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=96.82 E-value=0.0014 Score=79.04 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=45.3
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHh
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~ 183 (818)
.+.+||+||.++.. ....+.|++..+.+.-.|+|.|||.||+.+.+.+.+..-..++
T Consensus 583 vl~nLl~NAik~~~----------------~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~------- 639 (679)
T TIGR02916 583 VLGHLVQNALEATP----------------GEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTT------- 639 (679)
T ss_pred HHHHHHHHHHHhCC----------------CCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCC-------
Confidence 56778888777642 1234555555545455799999999999988554432111110
Q ss_pred hhhcCCCCccccccccceeeeeec
Q 003458 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (818)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~F~Va 207 (818)
+ . +..|+|.+.|--++
T Consensus 640 -----~-~--~G~GLGL~i~~~iv 655 (679)
T TIGR02916 640 -----K-G--AGMGIGVYECRQYV 655 (679)
T ss_pred -----C-C--CCcchhHHHHHHHH
Confidence 1 1 56799998876553
No 31
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=96.75 E-value=0.0028 Score=55.55 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=53.3
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..++||+.||.++.. ....+.|.+..+.....|.|.|+|.||+...+...+.....+ .
T Consensus 8 ~~~~~l~~n~~~~~~----------------~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~-~----- 65 (111)
T smart00387 8 QVLSNLLDNAIKYTP----------------EGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRT-D----- 65 (111)
T ss_pred HHHHHHHHHHHhcCC----------------CCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEEC-C-----
Confidence 357788888877653 123456666665555679999999999998887655332111 1
Q ss_pred hhhhcCCCCccccccccceeeeeeccEE
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVADYV 210 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~VadkV 210 (818)
......+++|+|++.+-.++.+.
T Consensus 66 -----~~~~~~~~~g~gl~~~~~~~~~~ 88 (111)
T smart00387 66 -----GRSRKIGGTGLGLSIVKKLVELH 88 (111)
T ss_pred -----CCCCCCCcccccHHHHHHHHHHc
Confidence 11234577999999887776553
No 32
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=96.72 E-value=0.0066 Score=73.06 Aligned_cols=159 Identities=19% Similarity=0.267 Sum_probs=90.2
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHH-------HHHHHHhcc
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------KNLGTIAKS 175 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~-------~~LgtIa~S 175 (818)
..+.|+|.||.|=.-. + ..-.|.|.++. ++.|+|.|||-||+.+--. +.+.+...+
T Consensus 37 hlv~EIvdNavDE~~a--------------g--~~~~I~V~i~~-dgsitV~DnGrGIPv~~h~~~~~~~~E~v~t~Lha 99 (637)
T TIGR01058 37 HLVWEIVDNSVDEVLA--------------G--YADNITVTLHK-DNSITVQDDGRGIPTGIHQDGNISTVETVFTVLHA 99 (637)
T ss_pred eehhhhhcchhhhhhc--------------C--CCcEEEEEEcC-CCeEEEEECCCcccCcccCcCCCccceeEEEEecc
Confidence 4567999999994210 1 12357777764 5689999999999863111 011111112
Q ss_pred CchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCe-eEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEec
Q 003458 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (818)
Q Consensus 176 g~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~-~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk 254 (818)
|.+ | .+..-.-.-|.-|||.-.+=.++.+++|.++.++.. ...|+..+...-.+... +....+||+|+....
T Consensus 100 Ggk-f----d~~~ykvSGGlhGvG~svvNAlS~~~~V~v~r~gk~~~q~f~~Gg~~~~~l~~~--~~~~~~GT~V~F~PD 172 (637)
T TIGR01058 100 GGK-F----DQGGYKTAGGLHGVGASVVNALSSWLEVTVKRDGQIYQQRFENGGKIVQSLKKI--GTTKKTGTLVHFHPD 172 (637)
T ss_pred cCc-C----CCCcccccCCcccccccccceeeceEEEEEEECCEEEEEEEecCCcCcCCcccc--cCCCCCceEEEEEeC
Confidence 211 1 000112245999999999999999999999875432 23454322211111111 233468999988755
Q ss_pred ccc--cccccHHHHHHHHHHhcCCC-CcceEEee
Q 003458 255 DEA--GEYLEESKLKELVKKYSEFI-NFPIYIWA 285 (818)
Q Consensus 255 ~~~--~e~l~~~~l~~lv~kys~fi-~~PI~l~~ 285 (818)
..- ..-++.+.|+.-++..+-.. ..-|++++
T Consensus 173 ~~iF~~~~f~~d~l~~RlrelA~Ln~GL~I~l~d 206 (637)
T TIGR01058 173 PTIFKTTQFNSNIIKERLKESAFLLKKLKLTFTD 206 (637)
T ss_pred HHHcCCCccCHHHHHHHHHHHhccCCCcEEEEEe
Confidence 432 11236677777777766333 35666654
No 33
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=96.67 E-value=0.004 Score=70.04 Aligned_cols=102 Identities=25% Similarity=0.252 Sum_probs=59.2
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..+.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+. ...+..
T Consensus 371 ~vl~nli~Na~~~~~----------------~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~-~~~~~~----- 428 (475)
T PRK11100 371 QALGNLLDNAIDFSP----------------EGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFE-RFYSLP----- 428 (475)
T ss_pred HHHHHHHHHHHHhCC----------------CCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHH-HHccCC-----
Confidence 346777777776531 1234555555555556799999999999998876442 222111
Q ss_pred hhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEec
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk 254 (818)
.. ...-+..|+|++.|-.++.. + +|.+.+... .+.||+|++.+.
T Consensus 429 ----~~-~~~~~~~GlGL~i~~~~~~~------~------------~G~i~i~s~-----~~~Gt~v~i~lp 472 (475)
T PRK11100 429 ----RP-ANGRKSTGLGLAFVREVARL------H------------GGEVTLRNR-----PEGGVLATLTLP 472 (475)
T ss_pred ----CC-CCCCCCcchhHHHHHHHHHH------C------------CCEEEEEEc-----CCCeEEEEEEee
Confidence 00 11124568999876555322 1 224455432 246999998875
No 34
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=96.61 E-value=0.003 Score=71.46 Aligned_cols=62 Identities=18% Similarity=0.255 Sum_probs=37.6
Q ss_pred ccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeecc
Q 003458 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVAD 208 (818)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~Vad 208 (818)
.+.|.+..+.+.-.|+|.|||.||+.+++.+.+..--+. . .......|..|+|++-|-.+++
T Consensus 373 ~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~-~---------~~~~~~~~g~GlGL~iv~~i~~ 434 (466)
T PRK10549 373 SLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRT-E---------GSRNRASGGSGLGLAICLNIVE 434 (466)
T ss_pred EEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccC-C---------CCcCCCCCCCcHHHHHHHHHHH
Confidence 445555555444568999999999999887644322111 0 1112245678999986555443
No 35
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=96.60 E-value=0.0037 Score=70.22 Aligned_cols=78 Identities=18% Similarity=0.261 Sum_probs=47.5
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEE--eCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchh
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL--DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSA 179 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~--d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~ 179 (818)
...|+.|+.||.++... .......|.|.. ..+.-.|+|.|||+||+.+...+.|-... ++
T Consensus 389 ~~vl~Nl~~NAik~~~~--------------~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~-~~--- 450 (494)
T TIGR02938 389 RSLFKALVDNAIEAMNI--------------KGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFF-TT--- 450 (494)
T ss_pred HHHHHHHHHHHHHHhhc--------------cCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCc-cc---
Confidence 44789999999998752 101122344443 34445699999999999988775442111 10
Q ss_pred HHHhhhhcCCCCccccccccceeeeee
Q 003458 180 FVEKMQTSGDLNLIGQFGVGFYSVYLV 206 (818)
Q Consensus 180 f~~~l~~~~~~~~IGqFGIGF~S~F~V 206 (818)
+....+.-|+|++-|-.+
T Consensus 451 ---------~~~~~~G~GlGL~i~~~i 468 (494)
T TIGR02938 451 ---------KGGSRKHIGMGLSVAQEI 468 (494)
T ss_pred ---------CCCCCCCCcccHHHHHHH
Confidence 111145678999766544
No 36
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=96.57 E-value=0.0035 Score=70.29 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=49.3
Q ss_pred ccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEee
Q 003458 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKH 216 (818)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~ 216 (818)
.+.|++..+.+.-.|+|.|||.||+.+.+.+.+-.--++.. .....-+..|+|++-+--++++ +
T Consensus 374 ~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~----------~~~~~~~g~GlGL~i~~~~~~~------~ 437 (457)
T TIGR01386 374 TITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDP----------ARSNSGEGTGLGLAIVRSIMEA------H 437 (457)
T ss_pred eEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCc----------ccCCCCCCccccHHHHHHHHHH------C
Confidence 45555555444457999999999999988765533222111 0112235689999776544332 1
Q ss_pred CCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEe
Q 003458 217 NDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHL 253 (818)
Q Consensus 217 ~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~L 253 (818)
+|.+++.. + +.||+|+|.+
T Consensus 438 ------------~G~~~~~~-~-----~~G~~~~~~~ 456 (457)
T TIGR01386 438 ------------GGRASAES-P-----DGKTRFILRF 456 (457)
T ss_pred ------------CCEEEEEe-C-----CCceEEEEec
Confidence 23455543 2 4689888875
No 37
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=96.54 E-value=0.0053 Score=70.72 Aligned_cols=53 Identities=17% Similarity=0.309 Sum_probs=37.1
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~L 169 (818)
..+.+|+.||.+|... .....+.|++..+.+.-.|+|.|||.||+.+++...|
T Consensus 436 ~vl~nLl~NAi~~~~~--------------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF 488 (542)
T PRK11086 436 TILGNLIENALEAVGG--------------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIF 488 (542)
T ss_pred HHHHHHHHHHHHHhhc--------------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHH
Confidence 3577999999998741 1123345555554444578999999999999887654
No 38
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=96.51 E-value=0.0038 Score=70.67 Aligned_cols=104 Identities=19% Similarity=0.288 Sum_probs=59.6
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~ 181 (818)
...+..||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+.+-.- ....
T Consensus 319 ~~vl~NLl~NAik~~~----------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f-~~~~---- 377 (430)
T PRK11006 319 RSAISNLVYNAVNHTP----------------EGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERF-YRVD---- 377 (430)
T ss_pred HHHHHHHHHHHHhcCC----------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCc-cccc----
Confidence 3456788888887642 112344554444445579999999999999887633211 1000
Q ss_pred HhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEec
Q 003458 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (818)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk 254 (818)
.....-.|..|+|++-|-.++.. + +|.+.+... .+.||++++.+.
T Consensus 378 -----~~~~~~~~G~GLGL~ivk~iv~~------~------------gG~i~i~s~-----~~~Gt~f~i~lP 422 (430)
T PRK11006 378 -----KARSRQTGGSGLGLAIVKHALSH------H------------DSRLEIESE-----VGKGTRFSFVLP 422 (430)
T ss_pred -----CCCCCCCCCCchHHHHHHHHHHH------C------------CCEEEEEec-----CCCceEEEEEec
Confidence 01112235679999776555321 2 123344331 246888888875
No 39
>PRK10604 sensor protein RstB; Provisional
Probab=96.39 E-value=0.0037 Score=71.14 Aligned_cols=100 Identities=19% Similarity=0.281 Sum_probs=58.4
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHh
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~ 183 (818)
.+..||.||..+. ...+.|.+..+.+.-.|+|.|||.||+.+++.+-+..-.+..
T Consensus 323 vl~NLl~NAik~~------------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~------- 377 (433)
T PRK10604 323 VLDNLLNNALRYA------------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD------- 377 (433)
T ss_pred HHHHHHHHHHHhC------------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC-------
Confidence 4667777766542 123566666665666799999999999998876442211110
Q ss_pred hhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEec
Q 003458 184 MQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (818)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk 254 (818)
.+....-|.+|+|++-+-.+++ .+ +|.+++... ...||++++.+.
T Consensus 378 ---~~~~~~~~g~GLGL~ivk~i~~------~~------------gG~i~v~s~-----~~~G~~f~i~lP 422 (433)
T PRK10604 378 ---PSRDRATGGCGLGLAIVHSIAL------AM------------GGSVNCDES-----ELGGARFSFSWP 422 (433)
T ss_pred ---CCCCCCCCCccchHHHHHHHHH------HC------------CCEEEEEec-----CCCeeEEEEEEe
Confidence 0111224678999975544433 11 123444432 256888888875
No 40
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=96.25 E-value=0.0058 Score=64.86 Aligned_cols=78 Identities=22% Similarity=0.251 Sum_probs=45.2
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHh
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~ 183 (818)
.+.+||.||..+.. ....+.|.+....+.-.|+|.|||.||+.+.+...+..-. +..
T Consensus 233 vl~nll~Nai~~~~----------------~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~-~~~------ 289 (333)
T TIGR02966 233 AFSNLVSNAIKYTP----------------EGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFY-RVD------ 289 (333)
T ss_pred HHHHHHHHhheeCC----------------CCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCce-ecC------
Confidence 67888888876531 1123444444444445699999999999998875432111 100
Q ss_pred hhhcCCCCccccccccceeeeeec
Q 003458 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (818)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~F~Va 207 (818)
.......+..|+|++.|-.++
T Consensus 290 ---~~~~~~~~g~glGL~~~~~~~ 310 (333)
T TIGR02966 290 ---KSRSRDTGGTGLGLAIVKHVL 310 (333)
T ss_pred ---cccccCCCCCcccHHHHHHHH
Confidence 000112245689998765554
No 41
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=96.21 E-value=0.0073 Score=68.06 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=45.1
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHh
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~ 183 (818)
.+++||+||..+. ...+.|++..+.+.-.|+|.|||.||+.+++...+..-- ++.
T Consensus 357 ~l~nli~NA~~~~------------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~-~~~------ 411 (461)
T PRK09470 357 ALENIVRNALRYS------------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFY-RVD------ 411 (461)
T ss_pred HHHHHHHHHHHhC------------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCc-cCC------
Confidence 4778888877542 123567766666666799999999999998876442111 100
Q ss_pred hhhcCCCCccccccccceee
Q 003458 184 MQTSGDLNLIGQFGVGFYSV 203 (818)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~ 203 (818)
......-|.+|+|++-+
T Consensus 412 ---~~~~~~~~g~GlGL~iv 428 (461)
T PRK09470 412 ---EARDRESGGTGLGLAIV 428 (461)
T ss_pred ---cccCCCCCCcchhHHHH
Confidence 01112346789999654
No 42
>PRK10364 sensor protein ZraS; Provisional
Probab=96.16 E-value=0.0094 Score=67.98 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=36.4
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~L 169 (818)
..+..||.||.+|.. ....+.|.+..+.+.-.|+|.|||.||+.+.+.+.|
T Consensus 351 ~il~NLl~NA~k~~~----------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 401 (457)
T PRK10364 351 QVLLNLYLNAIQAIG----------------QHGVISVTASESGAGVKISVTDSGKGIAADQLEAIF 401 (457)
T ss_pred HHHHHHHHHHHHhcC----------------CCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHh
Confidence 346778889988863 123455666655555679999999999999887543
No 43
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=96.11 E-value=0.0086 Score=74.01 Aligned_cols=97 Identities=19% Similarity=0.317 Sum_probs=56.8
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHh
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~ 183 (818)
.|.-||+||..+.. ...+.|++..+.+.-.|+|.|||+||+.+++.+.+.. |..
T Consensus 517 il~NLl~NAik~~~-----------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~~- 570 (921)
T PRK15347 517 ILVNLLGNAVKFTE-----------------TGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTP--------FYQ- 570 (921)
T ss_pred HHHHHHHHHhhcCC-----------------CCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcC--------ccc-
Confidence 56677777776531 1234555555544557899999999999988754421 211
Q ss_pred hhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEec
Q 003458 184 MQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (818)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk 254 (818)
. + ...|..|+|++-|-.+++. + +|.+++.. ..+.||++++.|.
T Consensus 571 ---~-~-~~~~g~GLGL~i~~~~~~~------~------------gG~i~i~s-----~~~~Gt~f~i~lp 613 (921)
T PRK15347 571 ---A-D-THSQGTGLGLTIASSLAKM------M------------GGELTLFS-----TPGVGSCFSLVLP 613 (921)
T ss_pred ---C-C-CCCCCCchHHHHHHHHHHH------c------------CCEEEEEe-----cCCCceEEEEEEE
Confidence 0 1 1235689998655433221 1 12344433 2357999999876
No 44
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.10 E-value=0.0091 Score=68.71 Aligned_cols=49 Identities=29% Similarity=0.336 Sum_probs=32.6
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCC-cEEEEEeCCCCCCHHHHHHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKN 168 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~~dL~~~ 168 (818)
++.+||.||..+.. ....+.|.+..+.+. -.|.|+|||+||+.+.+...
T Consensus 504 ~~~nli~na~~~~~----------------~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~ 553 (607)
T PRK11360 504 VLLNILINAVQAIS----------------ARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKI 553 (607)
T ss_pred HHHHHHHHHHHHhc----------------CCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhh
Confidence 46677777776542 112344555444444 67999999999999987653
No 45
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=96.09 E-value=0.0081 Score=69.86 Aligned_cols=104 Identities=17% Similarity=0.275 Sum_probs=60.8
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHh
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~ 183 (818)
.+.+||.||.+|+.+. + .....+.|.+..+.+.-.|.|.|||.||+.+++..-|.. +.+++
T Consensus 436 vl~nLl~NAi~~~~~~-------~-----~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~-~~~tk------ 496 (545)
T PRK15053 436 IVGNLLDNAFEASLRS-------D-----EGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQ-GVSTR------ 496 (545)
T ss_pred HHHHHHHHHHHHHhhC-------C-----CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCC-CCCCC------
Confidence 5889999999997520 0 111233444444333456899999999999988754421 11111
Q ss_pred hhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 003458 184 MQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (818)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk~ 255 (818)
... -|..|+|++-+.-+++. + +|.+++... .+.||++++.|..
T Consensus 497 -----~~~-~~g~GlGL~ivk~iv~~------~------------~G~i~v~s~-----~~~Gt~f~i~lP~ 539 (545)
T PRK15053 497 -----ADE-PGEHGIGLYLIASYVTR------C------------GGVITLEDN-----DPCGTLFSIFIPK 539 (545)
T ss_pred -----CCC-CCCceeCHHHHHHHHHH------c------------CCEEEEEEC-----CCCeEEEEEEECC
Confidence 111 24569999887655432 2 123333331 2578888888764
No 46
>PRK10815 sensor protein PhoQ; Provisional
Probab=96.09 E-value=0.0079 Score=69.98 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=49.1
Q ss_pred cEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeC
Q 003458 138 LEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN 217 (818)
Q Consensus 138 ~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~ 217 (818)
+.|.+..+.+.-.|+|.|||.||+.+++...|. .+.+ . + ..-+..|+|++-|--+++ .+
T Consensus 398 i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~----~f~~--------~-~-~~~~G~GLGL~Ivk~iv~------~~- 456 (485)
T PRK10815 398 VEISARQTDEHLHIVVEDDGPGIPESKRELIFD----RGQR--------A-D-TLRPGQGLGLSVAREITE------QY- 456 (485)
T ss_pred EEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhC----Cccc--------C-C-CCCCCcchhHHHHHHHHH------Hc-
Confidence 455555554445799999999999998875432 1110 0 0 111357999977655533 12
Q ss_pred CCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEeccc
Q 003458 218 DDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDE 256 (818)
Q Consensus 218 ~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk~~ 256 (818)
+|.+.+... .+.||++++.++..
T Consensus 457 -----------gG~i~v~s~-----~~~Gt~f~i~lp~~ 479 (485)
T PRK10815 457 -----------EGKISAGDS-----PLGGARMEVIFGRQ 479 (485)
T ss_pred -----------CCEEEEEEC-----CCCEEEEEEEEcCC
Confidence 234444432 24699999988753
No 47
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.06 E-value=0.011 Score=73.12 Aligned_cols=82 Identities=22% Similarity=0.319 Sum_probs=49.6
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHh
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~ 183 (818)
.|..||+||..+.. ...+.|.+..+...-.|.|.|||+||+.+++...|.. |..
T Consensus 565 il~NLl~NAik~~~-----------------~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~--------f~~- 618 (914)
T PRK11466 565 VITNLLSNALRFTD-----------------EGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQP--------FVQ- 618 (914)
T ss_pred HHHHHHHHHHHhCC-----------------CCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhch--------hhc-
Confidence 56777788776531 1234555555544557999999999999998765421 211
Q ss_pred hhhcCCCCccccccccceeeeeec----cEEEEEEee
Q 003458 184 MQTSGDLNLIGQFGVGFYSVYLVA----DYVEVISKH 216 (818)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~F~Va----dkV~V~Sk~ 216 (818)
. ....|..|+|++-|--++ -++.|.|..
T Consensus 619 ---~--~~~~~g~GLGL~i~~~l~~~~gG~i~v~s~~ 650 (914)
T PRK11466 619 ---V--SGKRGGTGLGLTISSRLAQAMGGELSATSTP 650 (914)
T ss_pred ---C--CCCCCCCcccHHHHHHHHHHcCCEEEEEecC
Confidence 0 112367899987665443 345555543
No 48
>PLN03237 DNA topoisomerase 2; Provisional
Probab=96.01 E-value=0.027 Score=72.46 Aligned_cols=161 Identities=16% Similarity=0.244 Sum_probs=94.7
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH---------HHHHH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK---------NLGTI 172 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~---------~LgtI 172 (818)
...+.|.|.||.|-.. | ++ ..-.|.|.++.+++.|+|.|||-||+-+ ++. .|+++
T Consensus 79 ~kifdEIldNAvDe~~--r-----~g--------~~~~I~V~I~~~~gsIsV~DnGRGIPV~-iH~~eg~~~pElIft~L 142 (1465)
T PLN03237 79 YKIFDEILVNAADNKQ--R-----DP--------KMDSLRVVIDVEQNLISVYNNGDGVPVE-IHQEEGVYVPEMIFGHL 142 (1465)
T ss_pred hhhHHHHhhhhHhHHh--h-----cC--------CCCEEEEEEEcCCCEEEEEecCccccCC-CCCCCCCccceEEEEee
Confidence 3578899999999642 2 11 1246888888788999999999999764 211 12222
Q ss_pred hccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeC-CCeeE--EEEEcCC-Cce-EEEeCCCCCCCCCCc
Q 003458 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKAD-GAF-AISEDTWNEPLGRGT 247 (818)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~-~d~~~--~W~s~~~-~~f-~i~~~~~~~~~~~GT 247 (818)
-.||+ | .+....-.-|+-|+|.-.|=.++.+++|.++.. ....| .|..+.+ ..- .+.. .....+||
T Consensus 143 hAGgk--F----dd~~yKvSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~---~~~~~~GT 213 (1465)
T PLN03237 143 LTSSN--Y----DDNEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITK---CKKSENWT 213 (1465)
T ss_pred ecccc--C----CCCcceeeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceecc---CCCCCCce
Confidence 22222 2 001112346999999999999999999999732 12333 5663211 110 1111 11236899
Q ss_pred EEEEEecccc--cccccHHHHHHHHHH---hcCCCC--cceEEeecc
Q 003458 248 EIRLHLRDEA--GEYLEESKLKELVKK---YSEFIN--FPIYIWASK 287 (818)
Q Consensus 248 ~I~L~Lk~~~--~e~l~~~~l~~lv~k---ys~fi~--~PI~l~~~~ 287 (818)
+|+..-...- ..-++.+.|..+.++ .+.|++ .-|++++.+
T Consensus 214 ~VtF~PD~eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~LndeR 260 (1465)
T PLN03237 214 KVTFKPDLAKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGKR 260 (1465)
T ss_pred EEEEEECHHHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 9988633221 112356666554344 345774 778887654
No 49
>PLN03128 DNA topoisomerase 2; Provisional
Probab=95.95 E-value=0.037 Score=70.36 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=89.1
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHH-------H-HHHHHhc
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI-------K-NLGTIAK 174 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~-------~-~LgtIa~ 174 (818)
..+.|.|.||.|-.. | ++ .--.|.|.++.+++.|+|.|||-||+-+--. + .|+++-.
T Consensus 55 ki~dEIldNAvDe~~--~-----~g--------~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~Lha 119 (1135)
T PLN03128 55 KIFDEILVNAADNKQ--R-----DP--------SMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLT 119 (1135)
T ss_pred HHHHHHHHHHHHHhh--h-----cC--------CCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeecc
Confidence 467899999999541 2 11 1237888888878899999999999864211 0 1222222
Q ss_pred cCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeC-CCee--EEEEEcCCCceEEEeCCCCCCCCCCcEEEE
Q 003458 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQ--YVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (818)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~-~d~~--~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L 251 (818)
||+ |- +....-.-|.-|||.-.+=.++.+++|.+... +... -.|+. |-..-............+||+|+.
T Consensus 120 Ggk--Fd----d~~ykvSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~-G~~~~~~p~i~~~~~~~~GT~ItF 192 (1135)
T PLN03128 120 SSN--FD----DNEKKTTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTN-NMSVKSEPKITSCKASENWTKITF 192 (1135)
T ss_pred ccc--cC----CccceeeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCC-CcccCCCceeccCCCCCCceEEEE
Confidence 332 21 01112346999999999999999999999833 2222 24532 210000111111112358999988
Q ss_pred Eecccc--cccccHHHHHHH---HHHhcCCCC--cceEEeec
Q 003458 252 HLRDEA--GEYLEESKLKEL---VKKYSEFIN--FPIYIWAS 286 (818)
Q Consensus 252 ~Lk~~~--~e~l~~~~l~~l---v~kys~fi~--~PI~l~~~ 286 (818)
.-...- ..-++.+.+..+ +...+.|++ .-|++++.
T Consensus 193 ~PD~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnde 234 (1135)
T PLN03128 193 KPDLAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNGK 234 (1135)
T ss_pred EECHHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 743221 011244433333 333455663 56666554
No 50
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=95.93 E-value=0.017 Score=71.94 Aligned_cols=74 Identities=18% Similarity=0.340 Sum_probs=48.2
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCC-cEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
.|..||+||..+.. .+.+.|.+....+. -.|.|.|||+||+.+++..-|..-.+
T Consensus 583 il~nLi~NAik~~~-----------------~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~-------- 637 (968)
T TIGR02956 583 VLINLVGNAIKFTD-----------------RGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQ-------- 637 (968)
T ss_pred HHHHHHHHHHhhCC-----------------CCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhc--------
Confidence 67888888887631 12456666666666 67999999999999998765432111
Q ss_pred hhhhcCCCCccccccccceeeeee
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLV 206 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~V 206 (818)
.......|..|+|++-|-.+
T Consensus 638 ----~~~~~~~~g~GLGL~i~~~l 657 (968)
T TIGR02956 638 ----ADGRRRSGGTGLGLAISQRL 657 (968)
T ss_pred ----cCCCCCCCCccHHHHHHHHH
Confidence 11112236789999765443
No 51
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.028 Score=66.60 Aligned_cols=164 Identities=19% Similarity=0.201 Sum_probs=95.5
Q ss_pred chhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH-------HHHHHh
Q 003458 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIA 173 (818)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~-------~LgtIa 173 (818)
....+.|.|.||.|=-- . + .--.|.|.++ .++.|+|.|||-||+-+.=.. .+.|+.
T Consensus 37 LhHlv~EVvDNsiDEal--a------------G--~~~~I~V~l~-~d~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~L 99 (635)
T COG0187 37 LHHLVWEVVDNSIDEAL--A------------G--YADRIDVTLH-EDGSISVEDNGRGIPVDIHPKEKVSAVEVIFTVL 99 (635)
T ss_pred ceeeEeEeeechHhHHh--h------------C--cCcEEEEEEc-CCCeEEEEECCCCCccccCCCCCCCceEEEEEee
Confidence 46678899999999432 1 1 2236777776 678999999999998654111 111222
Q ss_pred ccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCe-eEEEEEcCCCceEEEeCCCCCCCCCCcEEEEE
Q 003458 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRLH 252 (818)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~-~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~ 252 (818)
..|.+ |-. +.-.-.=|.-|||.--|=.++++++|++..++.. .-.|+- |...-.+...........||+|+.+
T Consensus 100 HAGGK-Fd~----~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~-G~~~~~l~~ig~~~~~~~GT~V~F~ 173 (635)
T COG0187 100 HAGGK-FDN----DSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFER-GVPVTPLEVIGSTDTKKTGTKVRFK 173 (635)
T ss_pred ccCcc-cCC----CccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeC-CCcCCCceecccCCCCCCccEEEEE
Confidence 22211 100 0001135889999988999999999999986432 123332 2211122222111345679999887
Q ss_pred eccccc--ccccHHHHHHHHHHhcCCCC-cceEEeecc
Q 003458 253 LRDEAG--EYLEESKLKELVKKYSEFIN-FPIYIWASK 287 (818)
Q Consensus 253 Lk~~~~--e~l~~~~l~~lv~kys~fi~-~PI~l~~~~ 287 (818)
-.+.-- .-.+...|+..++.++=..+ .-|.+....
T Consensus 174 PD~~iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r 211 (635)
T COG0187 174 PDPEIFGETEFDYEILKRRLRELAFLNKGVKITLTDER 211 (635)
T ss_pred cChHhcCCcccCHHHHHHHHHHHhccCCCCEEEEEecc
Confidence 543221 12367778888877664443 677776543
No 52
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=95.75 E-value=0.013 Score=70.02 Aligned_cols=157 Identities=14% Similarity=0.141 Sum_probs=86.2
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH--H--H------HHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--N--L------GTI 172 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~--~--L------gtI 172 (818)
..+.|+|.||+|-.. | ++. ..--.|.|.++ ++.|+|.|||-||+-+--.+ . . .++
T Consensus 48 hi~~EIldNavDe~~--~-----~~~------g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~ 112 (602)
T PHA02569 48 KIIDEIIDNSVDEAI--R-----TNF------KFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTR 112 (602)
T ss_pred eeeehhhhhhhhhhh--c-----cCC------CCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEe
Confidence 456799999999532 1 221 12236777777 67899999999998643211 0 0 122
Q ss_pred hccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCe-eEEEEEcCCCceEEEeCCCCCCCCCCcEEEE
Q 003458 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDK-QYVWESKADGAFAISEDTWNEPLGRGTEIRL 251 (818)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~-~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L 251 (818)
..+|.+ | . +.-.-.-|.-|||.-.+=.++.+++|+++..+.. ...|.. |- ...+.+.+....+||+|+.
T Consensus 113 LhaGgk-F-d----~~ykvSGGlhGVG~svvNaLS~~~~V~v~~~~~~~~q~f~~-G~---~~~~~~~~~~~~~GT~V~F 182 (602)
T PHA02569 113 TKAGSN-F-D----DTNRVTGGMNGVGSSLTNFFSVLFIGETCDGKNEVTVNCSN-GA---ENISWSTKPGKGKGTSVTF 182 (602)
T ss_pred eccccc-c-C----CcceeeCCcCCccceeeeccchhhheEEEcCCEEEEEEecC-Cc---ccCCcccCCCCCCccEEEE
Confidence 222221 3 1 1112246999999988889999999988543322 223432 21 1111111234468999988
Q ss_pred Eecccccc--ccc---HHHHHHHHHHhcCCCC--cceEEee
Q 003458 252 HLRDEAGE--YLE---ESKLKELVKKYSEFIN--FPIYIWA 285 (818)
Q Consensus 252 ~Lk~~~~e--~l~---~~~l~~lv~kys~fi~--~PI~l~~ 285 (818)
.-...--. -++ ...|..-++..+ |++ .-|++++
T Consensus 183 ~PD~~iF~~~~~~~~~~~~l~~Rl~elA-~Ln~Gl~I~l~d 222 (602)
T PHA02569 183 IPDFSHFEVNGLDQQYLDIILDRLQTLA-VVFPDIKFTFNG 222 (602)
T ss_pred EECHHHhCCCccCccHHHHHHHHHHHHh-cCCCCCEEEEEe
Confidence 75442211 012 344555555443 554 5566654
No 53
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.00027 Score=82.16 Aligned_cols=225 Identities=11% Similarity=-0.035 Sum_probs=166.6
Q ss_pred hhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHH
Q 003458 512 KKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLE 591 (818)
Q Consensus 512 ~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE 591 (818)
+...+..+|+.|..++..++-+.--.....-+.. ....-.-....|.+++ .+.+.+-..++....+.-.+...-...
T Consensus 375 e~a~d~e~Y~kFy~~f~~~lk~gi~e~s~~~~k~-~a~lLry~ss~s~~~~--~Sl~dYv~rm~~~qk~iyyi~~~s~~~ 451 (656)
T KOG0019|consen 375 DLAKDAEKYKKFFKNYGLFLKEGIVTASEQQVKE-IAKLLRYESSKSGEGA--TSLDDYVERMREGQKNIYYITAPNRQL 451 (656)
T ss_pred HHhhhHHHHHHHHHHHhhhhhhcccchhhhhhhH-HHHHhhhhcccccccc--ccHHHHHHhhcccccceEEeccchhhh
Confidence 4558999999999999999888776666555554 3332222335677777 566777888888888888888888888
Q ss_pred HHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccccCCCCc--ch---HHHHHHHHHHHHHHHhhcCCCCccEEE
Q 003458 592 RLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD---KELKESFKELTKWWKGALASENVDDVK 666 (818)
Q Consensus 592 ~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~---~~~~~~~~~L~~~lK~~L~~~~V~~V~ 666 (818)
+..+-++|++..-++.+.||.+.+.+|-...++......+..-+.+ +. ++.+++.....+.++. |- ..
T Consensus 452 ~~~sp~~E~~k~~~~evly~~ep~DE~~~~~Lk~~~~k~lVsvtkEglel~e~ee~~~k~ee~k~efe~-lc------k~ 524 (656)
T KOG0019|consen 452 AESSPYYEAFKKKNYEVLFMYEPADEVVLLGLKEFKGKKLVSVTKEGVELPEDDEEKAKDEESKKEFEE-LC------KW 524 (656)
T ss_pred hhcchHHHHHHhcCceeEeeeccHHHHHHHhhhhhcccceeccchhhccCCccchhHHHHHHHHHHHHH-HH------HH
Confidence 9999999999999999999999999999999988887766543333 11 3333333333323222 21 22
Q ss_pred EeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhhhcccccceeeCCCChHHHHHHHhhccCCCchhHHHHHHHHH
Q 003458 667 VSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIY 746 (818)
Q Consensus 667 vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~~~~~kkiLEINp~HPlIk~L~~~~~~d~~d~~~~~~a~~Ly 746 (818)
+.++|.+ +|+-|+..++|+.++..|+..+....+++...|.++.+.+.||-|-+.- .+-++-+|+.+.++.+-.+..
T Consensus 525 mK~iL~~-kVekV~vs~RlvssPc~I~t~~~gwsAnmeriMkAqal~d~s~~~ym~~--kk~lEINP~hpivk~L~~~~~ 601 (656)
T KOG0019|consen 525 MKEILGS-KVEKVTVNNRLVSHPAMITTLEYGWAARMERIMKAQALTDNETMGYMKA--KKHLEINPDHPLVKTLRQLRE 601 (656)
T ss_pred HHHHhcC-ceEEEEecCcccCCceEEEecccccchhHHHHHhhhhccccChhhhccc--cceeeeCCCChHHHHHHHHHh
Confidence 3467876 9999999999999999999988666777778889999999999998876 334566888899988876655
Q ss_pred HHH
Q 003458 747 QTA 749 (818)
Q Consensus 747 d~A 749 (818)
...
T Consensus 602 ~dk 604 (656)
T KOG0019|consen 602 SDK 604 (656)
T ss_pred cCc
Confidence 443
No 54
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=95.39 E-value=0.065 Score=69.14 Aligned_cols=162 Identities=17% Similarity=0.259 Sum_probs=93.0
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH--------HHHHHhc
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIAK 174 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~--------~LgtIa~ 174 (818)
..+.|+|.||+|-.. | ++ ....--.|.|.++.+.+.|+|.|||-||+-+--.+ .|+++-.
T Consensus 60 ki~dEIldNAvDe~~--r-----~~-----~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~a 127 (1388)
T PTZ00108 60 KIFDEILVNAADNKA--R-----DK-----GGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLT 127 (1388)
T ss_pred hhHHHHhhhhhhhhc--c-----cC-----CCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeec
Confidence 467899999999542 2 10 01123478888888878999999999997642110 1233323
Q ss_pred cCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeC--CCe-eEEEEEcC---CCceEEEeCCCCCCCCCCcE
Q 003458 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN--DDK-QYVWESKA---DGAFAISEDTWNEPLGRGTE 248 (818)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~--~d~-~~~W~s~~---~~~f~i~~~~~~~~~~~GT~ 248 (818)
||+ | .+....-.-|.-|+|.-.+=.++.+++|.+... +.. .-.|.... ... .|.. .....+||+
T Consensus 128 Ggk--f----dd~~yKvSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p-~i~~---~~~~~~GT~ 197 (1388)
T PTZ00108 128 SSN--Y----DDTEKRVTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEP-RITS---YDGKKDYTK 197 (1388)
T ss_pred ccc--C----CCCceeeecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCC-ccCC---CCCCCCceE
Confidence 332 2 001112347999999999999999999999876 322 23565331 111 1211 001158999
Q ss_pred EEEEecccc--cccccHHH---HHHHHHHhcCCC-CcceEEeec
Q 003458 249 IRLHLRDEA--GEYLEESK---LKELVKKYSEFI-NFPIYIWAS 286 (818)
Q Consensus 249 I~L~Lk~~~--~e~l~~~~---l~~lv~kys~fi-~~PI~l~~~ 286 (818)
|+..-...- ..-++.+. |..-+...+-.. ..-|++++.
T Consensus 198 VtF~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnde 241 (1388)
T PTZ00108 198 VTFYPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNGE 241 (1388)
T ss_pred EEEEeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcEEEEeCc
Confidence 988744321 11234555 444455444333 366777654
No 55
>PRK09303 adaptive-response sensory kinase; Validated
Probab=95.31 E-value=0.034 Score=62.47 Aligned_cols=77 Identities=18% Similarity=0.215 Sum_probs=44.3
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCC-CcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~ 181 (818)
-.|..||.||+.+.. ....+.|.+....+ .-.|+|.|||.||+.+++.+.|. . |.
T Consensus 275 qvl~NLl~NAik~~~----------------~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~----p----f~ 330 (380)
T PRK09303 275 QVLLNLLDNAIKYTP----------------EGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFE----D----RV 330 (380)
T ss_pred HHHHHHHHHHHhcCC----------------CCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHcc----C----ce
Confidence 457778888876542 11223333333222 24689999999999998875432 1 11
Q ss_pred HhhhhcCCCCccccccccceeeeeec
Q 003458 182 EKMQTSGDLNLIGQFGVGFYSVYLVA 207 (818)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~F~Va 207 (818)
. .....-.+..|+|++-|..++
T Consensus 331 ~----~~~~~~~~G~GLGL~i~~~iv 352 (380)
T PRK09303 331 R----LPRDEGTEGYGIGLSVCRRIV 352 (380)
T ss_pred e----CCCCCCCCcccccHHHHHHHH
Confidence 0 001112356899998776664
No 56
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=95.26 E-value=0.024 Score=63.75 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=23.7
Q ss_pred ccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHH
Q 003458 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (818)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~L 169 (818)
.+.|.+..+.+.-.|+|.|||.||+.+++.+.+
T Consensus 350 ~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~ 382 (435)
T PRK09467 350 WIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLF 382 (435)
T ss_pred eEEEEEEecCCEEEEEEEecCCCcCHHHHHHhc
Confidence 345555554444569999999999999887544
No 57
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=94.92 E-value=0.044 Score=66.93 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=47.2
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..+..||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+..- .+++.
T Consensus 600 ~il~NLI~NAik~s~----------------~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F-~t~~~---- 658 (703)
T TIGR03785 600 QMLDKLVDNAREFSP----------------EDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSM-VSVRD---- 658 (703)
T ss_pred HHHHHHHHHHHHHCC----------------CCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCC-eecCC----
Confidence 346677777776642 122355555555555579999999999999887544221 11110
Q ss_pred hhhhcCCCCccccccccceeeeeecc
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVAD 208 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~Vad 208 (818)
....--+..|+|++-|-.+++
T Consensus 659 -----~~~~~~~g~GLGL~Ivr~Iv~ 679 (703)
T TIGR03785 659 -----QGAQDQPHLGLGLYIVRLIAD 679 (703)
T ss_pred -----CCCCCCCCccHHHHHHHHHHH
Confidence 011112468999987765544
No 58
>PRK10337 sensor protein QseC; Provisional
Probab=94.90 E-value=0.042 Score=62.15 Aligned_cols=71 Identities=23% Similarity=0.305 Sum_probs=42.0
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHh
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~ 183 (818)
.++.||.||..+.. .. ..|.|.... ..|+|.|||.||+++++...+-..-+.
T Consensus 356 vl~Nli~NA~k~~~----------------~~--~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f~~~-------- 407 (449)
T PRK10337 356 LVRNLLDNAIRYSP----------------QG--SVVDVTLNA--RNFTVRDNGPGVTPEALARIGERFYRP-------- 407 (449)
T ss_pred HHHHHHHHHHhhCC----------------CC--CeEEEEEEe--eEEEEEECCCCCCHHHHHHhcccccCC--------
Confidence 56777777766531 11 234444432 379999999999999887644221110
Q ss_pred hhhcCCCCccccccccceeeeeec
Q 003458 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (818)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~F~Va 207 (818)
+..-.+..|+|+.-|-.++
T Consensus 408 -----~~~~~~g~GlGL~iv~~i~ 426 (449)
T PRK10337 408 -----PGQEATGSGLGLSIVRRIA 426 (449)
T ss_pred -----CCCCCCccchHHHHHHHHH
Confidence 1111245899987654443
No 59
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=94.73 E-value=0.049 Score=67.33 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=48.9
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeC--CC---cEEEEEeCCCCCCHHHHHHHHHHHhccCch
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK--EK---KILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~--~~---~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~ 178 (818)
.|..||+||..+.. ...+.|.+.... ++ -.|+|.|||+||+++++.+.|-.-.+..
T Consensus 412 vl~NLl~NAik~~~-----------------~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~-- 472 (919)
T PRK11107 412 IITNLVGNAIKFTE-----------------SGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQAD-- 472 (919)
T ss_pred HHHHHHHHHhhcCC-----------------CCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCC--
Confidence 57788888876632 123445554322 21 3589999999999998876442211110
Q ss_pred hHHHhhhhcCCCCccccccccceeeeeec----cEEEEEEee
Q 003458 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVA----DYVEVISKH 216 (818)
Q Consensus 179 ~f~~~l~~~~~~~~IGqFGIGF~S~F~Va----dkV~V~Sk~ 216 (818)
.......|..|+|++-|-.++ -++.|.|..
T Consensus 473 --------~~~~~~~~g~GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 473 --------ASISRRHGGTGLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred --------CCCCCCCCCcchhHHHHHHHHHHhCCEEEEEecC
Confidence 011123467899998665543 344555443
No 60
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=94.63 E-value=0.18 Score=61.83 Aligned_cols=90 Identities=19% Similarity=0.272 Sum_probs=55.3
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEe-CCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD-KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d-~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~ 181 (818)
-.|..||.||.++.. ...+.|.+... .+.-.|+|.|||+||+.+++.+-|-.-.+. +
T Consensus 401 qvl~NLl~NAik~~~-----------------~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~-~---- 458 (779)
T PRK11091 401 QILWNLISNAVKFTQ-----------------QGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQV-K---- 458 (779)
T ss_pred HHHHHHHHHHHHhCC-----------------CCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcc-c----
Confidence 357789999887641 12356666655 333578999999999999887654321111 0
Q ss_pred HhhhhcCCCCccccccccceeeeee----ccEEEEEEeeCC
Q 003458 182 EKMQTSGDLNLIGQFGVGFYSVYLV----ADYVEVISKHND 218 (818)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~F~V----adkV~V~Sk~~~ 218 (818)
........|.-|+|++-|-.+ .-++.|.|....
T Consensus 459 ----~~~~~~~~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~ 495 (779)
T PRK11091 459 ----DSHGGKPATGTGIGLAVSKRLAQAMGGDITVTSEEGK 495 (779)
T ss_pred ----CCCCCCCCCCcchHHHHHHHHHHHcCCEEEEEecCCC
Confidence 011223346779998766544 356777776543
No 61
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=94.55 E-value=0.19 Score=62.48 Aligned_cols=83 Identities=25% Similarity=0.409 Sum_probs=51.6
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEe---------------CCCcEEEEEeCCCCCCHHHHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD---------------KEKKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d---------------~~~~~L~I~DNGiGMT~~dL~~ 167 (818)
..+..||+||..++. ....+.|.+... .+.-.|.|.|||+||+.+++..
T Consensus 563 qvl~NLl~NAik~~~----------------~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~ 626 (828)
T PRK13837 563 QVLMNLCSNAAQAMD----------------GAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPH 626 (828)
T ss_pred HHHHHHHHHHHHHcc----------------cCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 357788888888763 123345555544 2223689999999999998865
Q ss_pred HHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeec----cEEEEEEeeC
Q 003458 168 NLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA----DYVEVISKHN 217 (818)
Q Consensus 168 ~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~Va----dkV~V~Sk~~ 217 (818)
.| .. |. + .. . |..|+|++-|-.++ -++.|.|...
T Consensus 627 iF----e~----F~---~--~~-~--~G~GLGL~i~~~iv~~~gG~i~v~s~~g 664 (828)
T PRK13837 627 IF----EP----FF---T--TR-A--GGTGLGLATVHGIVSAHAGYIDVQSTVG 664 (828)
T ss_pred hh----CC----cc---c--CC-C--CCCcchHHHHHHHHHHCCCEEEEEecCC
Confidence 33 11 11 0 11 1 67899998765543 5677777644
No 62
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=94.48 E-value=0.062 Score=67.40 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=32.4
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCC---CcEEEEEeCCCCCCHHHHHHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE---KKILSIRDRGIGMTKEDLIKNL 169 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~---~~~L~I~DNGiGMT~~dL~~~L 169 (818)
-.|.-||+||..+.. .+.+.|.+..... .-.|+|.|||+||+.+++.+-|
T Consensus 568 QVL~NLL~NAik~t~-----------------~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IF 620 (894)
T PRK10618 568 KILLLLLNYAITTTA-----------------YGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLH 620 (894)
T ss_pred HHHHHHHHHHHHhCC-----------------CCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhc
Confidence 356778888876532 1234444443322 2368999999999999987643
No 63
>PRK03660 anti-sigma F factor; Provisional
Probab=94.43 E-value=0.1 Score=50.33 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=30.6
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTK 162 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~ 162 (818)
...+.|++.||.... +. . .....+.|++......-.++|.|+|.||+.
T Consensus 41 ~~~l~eli~Nai~h~----~~---~------~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 41 KTAVSEAVTNAIIHG----YE---N------NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHHHHHHHh----cC---C------CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 346899999988542 10 0 111335555555544456899999999984
No 64
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=94.33 E-value=0.086 Score=66.38 Aligned_cols=78 Identities=18% Similarity=0.352 Sum_probs=46.5
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
-.|.-||+||..+.. ...+.|.+..+...-.|+|.|||+||+.+++.+.|..-.+.+
T Consensus 565 qvl~NLl~NAik~t~-----------------~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~------ 621 (924)
T PRK10841 565 QVISNLLSNAIKFTD-----------------TGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVG------ 621 (924)
T ss_pred HHHHHHHHHHHhhCC-----------------CCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCC------
Confidence 357778888876631 123456665554445789999999999998876442111100
Q ss_pred hhhhcCCCCccccccccceeeeeec
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVA 207 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~Va 207 (818)
.......+..|+|++-|-.++
T Consensus 622 ----~~~~~~~~GtGLGL~I~k~lv 642 (924)
T PRK10841 622 ----TGVQRNFQGTGLGLAICEKLI 642 (924)
T ss_pred ----CCCCCCCCCeehhHHHHHHHH
Confidence 011112356799997665543
No 65
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=94.32 E-value=0.057 Score=63.77 Aligned_cols=27 Identities=19% Similarity=0.486 Sum_probs=19.6
Q ss_pred ccEEEEEEeCCCcEEEEEeCCCCCCHH
Q 003458 137 KLEIQIKLDKEKKILSIRDRGIGMTKE 163 (818)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~~ 163 (818)
.+.|.+..+.+.-.|+|.|||+||+.+
T Consensus 489 ~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 489 EVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred eEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 355666555445579999999999864
No 66
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=94.28 E-value=0.11 Score=49.69 Aligned_cols=46 Identities=20% Similarity=0.335 Sum_probs=30.0
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCC
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMT 161 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT 161 (818)
..+.||++||..+. +. . .....+.|.+....+.-.|+|.|+|.||+
T Consensus 42 ~~l~eli~Nai~h~----~~---~------~~~~~I~v~~~~~~~~~~i~I~D~G~gi~ 87 (137)
T TIGR01925 42 TAVSEAVTNAIIHG----YE---E------NCEGVVYISATIEDHEVYITVRDEGIGIE 87 (137)
T ss_pred HHHHHHHHHHHHhc----cC---C------CCCcEEEEEEEEeCCEEEEEEEEcCCCcC
Confidence 46889999988542 10 0 11234555555555556789999999997
No 67
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=94.21 E-value=0.12 Score=63.84 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=90.9
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH-------HHHHHhc
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAK 174 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~-------~LgtIa~ 174 (818)
...+.|+|.||+|=... + .--.|.|.+++ +..++|+|||-||+-+.-.. ...|+..
T Consensus 131 hhLv~EIlDNSVDE~la--------------G--~~~~I~V~i~~-DgsItV~DnGRGIPvd~h~k~g~s~~E~VlT~Lh 193 (903)
T PTZ00109 131 HQLLFEILDNSVDEYLA--------------G--ECNKITVVLHK-DGSVEISDNGRGIPCDVSEKTGKSGLETVLTVLH 193 (903)
T ss_pred eEEEEEEeeccchhhcc--------------C--CCcEEEEEEcC-CCeEEEEeCCccccccccccCCCcceeEEEEEec
Confidence 45789999999994310 1 12357777765 47899999999998643211 1113333
Q ss_pred cCchhHHHhh---------------------------------hh-c-CC-CCccccccccceeeeeeccEEEEEEeeCC
Q 003458 175 SGTSAFVEKM---------------------------------QT-S-GD-LNLIGQFGVGFYSVYLVADYVEVISKHND 218 (818)
Q Consensus 175 Sg~~~f~~~l---------------------------------~~-~-~~-~~~IGqFGIGF~S~F~VadkV~V~Sk~~~ 218 (818)
+|.+ |-... .. . .. .-.-|.-|||.-.+=.++.+++|.++..+
T Consensus 194 AGGK-F~~~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~YkvSGGLHGVG~SVVNALS~~l~VeV~RdG 272 (903)
T PTZ00109 194 SGGK-FQDTFPKNSRSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYEYSSGLHGVGLSVVNALSSFLKVDVFKGG 272 (903)
T ss_pred cCcc-ccCcccccccccccccccccccccccccccccccccccccccCCcceecCcCCCcceeeeeeccCeEEEEEEECC
Confidence 3322 21100 00 0 00 12578999999889999999999998754
Q ss_pred Ce-eEEEEEcCCCceEEEeCCCCCC-CCCCcEEEEEec-cc-ccc-c--------------ccHHHHHHHHHHhcCCCC-
Q 003458 219 DK-QYVWESKADGAFAISEDTWNEP-LGRGTEIRLHLR-DE-AGE-Y--------------LEESKLKELVKKYSEFIN- 278 (818)
Q Consensus 219 d~-~~~W~s~~~~~f~i~~~~~~~~-~~~GT~I~L~Lk-~~-~~e-~--------------l~~~~l~~lv~kys~fi~- 278 (818)
.. ...|+ .|...-.+... +.. ..+||+|+..-. +. ... . .+.+.|+.-++.++ |++
T Consensus 273 K~y~q~F~-rG~~v~pLkvi--g~~~~~tGT~VtF~PD~~~IF~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElA-fLNp 348 (903)
T PTZ00109 273 KIYSIELS-KGKVTKPLSVF--SCPLKKRGTTIHFLPDYKHIFKTHHQHTETEEEEGCKNGFNLDLIKNRIHELS-YLNP 348 (903)
T ss_pred EEEEEEeC-CCcccCCcccc--CCcCCCCceEEEEEeCcchhcCccccccccccccccccccCHHHHHHHHHHHh-ccCC
Confidence 32 12332 12111011111 122 358999988755 43 111 1 24567777777776 554
Q ss_pred -cceEEee
Q 003458 279 -FPIYIWA 285 (818)
Q Consensus 279 -~PI~l~~ 285 (818)
.-|++++
T Consensus 349 GL~I~L~D 356 (903)
T PTZ00109 349 GLTFYLVD 356 (903)
T ss_pred CcEEEEEe
Confidence 5555553
No 68
>PRK10547 chemotaxis protein CheA; Provisional
Probab=94.21 E-value=0.17 Score=61.53 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=33.5
Q ss_pred HHHhhhcHHHHHH----HHHHhhccCccccCCCCCCccEEEEEEe--CCCcEEEEEeCCCCCCHHHHHH
Q 003458 105 LRELISNASDALD----KIRFLSLTDKEVLGEGDNTKLEIQIKLD--KEKKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 105 LRELIqNA~DA~~----k~r~~~l~~~~~~g~~~~~~~~I~I~~d--~~~~~L~I~DNGiGMT~~dL~~ 167 (818)
|..||.||.|+.- .++. .| ......|.|... .+.-.|+|.|+|.||+.+.+..
T Consensus 390 L~hLirNAidHgie~p~~R~~--------~g--kp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~ 448 (670)
T PRK10547 390 LTHLVRNSLDHGIELPEKRLA--------AG--KNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILA 448 (670)
T ss_pred HHHHHHHHHHhhccchhhHHh--------cC--CCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHH
Confidence 5689999999862 1111 01 112234555543 3334689999999999988764
No 69
>PRK10490 sensor protein KdpD; Provisional
Probab=93.96 E-value=0.099 Score=65.64 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=45.4
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..|..||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...|.. ..++
T Consensus 781 qVL~NLL~NAik~s~----------------~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFep-F~~~------ 837 (895)
T PRK10490 781 RVLINLLENAVKYAG----------------AQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDK-FARG------ 837 (895)
T ss_pred HHHHHHHHHHHHhCC----------------CCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCC-CccC------
Confidence 357788888876641 12234555555544557999999999999987654321 1111
Q ss_pred hhhhcCCCCccccccccceeeeee
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLV 206 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~V 206 (818)
......+..|+|++-|-.+
T Consensus 838 -----~~~~~~~G~GLGL~Ivk~i 856 (895)
T PRK10490 838 -----NKESAIPGVGLGLAICRAI 856 (895)
T ss_pred -----CCCCCCCCccHHHHHHHHH
Confidence 1111234578898766444
No 70
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=93.49 E-value=0.12 Score=60.60 Aligned_cols=73 Identities=27% Similarity=0.393 Sum_probs=47.2
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..|.=||-||.||..+ . .....+.+.|..+.+.-.|.|.|||.||+++.... +-..|.|.+.
T Consensus 430 tIlGNLidNA~eA~~~-------~------~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~-iFe~G~Stk~---- 491 (537)
T COG3290 430 TILGNLIDNALEALLA-------P------EENKEIELSLSDRGDELVIEVADTGPGIPPEVRDK-IFEKGVSTKN---- 491 (537)
T ss_pred HHHHHHHHHHHHHhhc-------c------CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHH-HHhcCccccC----
Confidence 4566799999999862 1 12233444444444444689999999999988774 3344544321
Q ss_pred hhhhcCCCCccccccccceee
Q 003458 183 KMQTSGDLNLIGQFGVGFYSV 203 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~ 203 (818)
.|.-|+|+|=+
T Consensus 492 ----------~~~rGiGL~Lv 502 (537)
T COG3290 492 ----------TGGRGIGLYLV 502 (537)
T ss_pred ----------CCCCchhHHHH
Confidence 47789998643
No 71
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=93.44 E-value=0.096 Score=61.82 Aligned_cols=51 Identities=29% Similarity=0.501 Sum_probs=37.4
Q ss_pred HHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHH
Q 003458 105 LRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (818)
Q Consensus 105 LRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~L 169 (818)
|-=|||||.||+.- ...+.++|+..-+.+.-.|+|+|||.|+..+-+...|
T Consensus 502 LvNLl~NALDA~~~--------------~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lF 552 (603)
T COG4191 502 LVNLLQNALDAMAG--------------QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLF 552 (603)
T ss_pred HHHHHHHHHHHhcC--------------CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhc
Confidence 34499999999962 1234456666666666789999999999998876544
No 72
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=93.20 E-value=0.14 Score=65.81 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=44.0
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEE---eCCC--cEEEEEeCCCCCCHHHHHHHHHHHhccCc
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL---DKEK--KILSIRDRGIGMTKEDLIKNLGTIAKSGT 177 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~---d~~~--~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~ 177 (818)
-.|..||+||.++.. ...+.|.+.. +... -.|+|.|||+||+.+++.+-|..- ..+
T Consensus 831 qvl~NLl~NAik~~~-----------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f-~~~- 891 (1197)
T PRK09959 831 QVLSNLLSNALKFTT-----------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRY-SQT- 891 (1197)
T ss_pred HHHHHHHHHHHHhCC-----------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhccc-ccc-
Confidence 467889999888753 1123444432 1222 247999999999999887543211 110
Q ss_pred hhHHHhhhhcCCCCccccccccceeeeeec
Q 003458 178 SAFVEKMQTSGDLNLIGQFGVGFYSVYLVA 207 (818)
Q Consensus 178 ~~f~~~l~~~~~~~~IGqFGIGF~S~F~Va 207 (818)
......+..|+|++-|-.++
T Consensus 892 ----------~~~~~~~G~GLGL~i~~~iv 911 (1197)
T PRK09959 892 ----------SAGRQQTGSGLGLMICKELI 911 (1197)
T ss_pred ----------ccCCCCCCcCchHHHHHHHH
Confidence 01112356899998665543
No 73
>PRK09835 sensor kinase CusS; Provisional
Probab=92.91 E-value=0.15 Score=58.02 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=24.4
Q ss_pred ccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHH
Q 003458 137 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNL 169 (818)
Q Consensus 137 ~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~L 169 (818)
.+.|++..+.+.-.|+|.|||.||+.+++...+
T Consensus 396 ~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if 428 (482)
T PRK09835 396 AITVRCQEVDHQVQLVVENPGTPIAPEHLPRLF 428 (482)
T ss_pred eEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHh
Confidence 355666555555679999999999999887533
No 74
>PRK13557 histidine kinase; Provisional
Probab=92.88 E-value=0.14 Score=58.62 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.8
Q ss_pred EEEEEeCCCCCCHHHHHH
Q 003458 150 ILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 150 ~L~I~DNGiGMT~~dL~~ 167 (818)
.|+|.|||.||+.+.+..
T Consensus 326 ~i~v~D~G~Gi~~~~~~~ 343 (540)
T PRK13557 326 SIAVTDTGSGMPPEILAR 343 (540)
T ss_pred EEEEEcCCCCCCHHHHHh
Confidence 689999999999988764
No 75
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.62 E-value=0.15 Score=53.10 Aligned_cols=49 Identities=29% Similarity=0.462 Sum_probs=35.1
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~ 167 (818)
...|..||+||.+|+. .+.+.|.+....+.-.|.|.|||.||+++.+..
T Consensus 230 ~~vl~nLi~NAi~~~~-----------------~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~ 278 (336)
T COG0642 230 RQVLVNLLSNAIKYTP-----------------GGEITISVRQDDEQVTISVEDTGPGIPEEELER 278 (336)
T ss_pred HHHHHHHHHHHhccCC-----------------CCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHH
Confidence 3468899999999872 123445554433346799999999999999654
No 76
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=91.80 E-value=0.35 Score=45.27 Aligned_cols=81 Identities=19% Similarity=0.331 Sum_probs=53.5
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~ 181 (818)
..++.|++.||+.+... . .....+.|++..+...-.|.|+|+|.|++...+.... .
T Consensus 33 ~lav~E~~~Nav~H~~~---------~----~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~-------~---- 88 (125)
T PF13581_consen 33 ELAVSEALTNAVEHGYP---------G----DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPD-------P---- 88 (125)
T ss_pred HHHHHHHHHHHHHHcCC---------C----CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcc-------c----
Confidence 45889999999988741 0 1124566676677777789999999999877553211 0
Q ss_pred HhhhhcCCCCccccccccceeeeeeccEEEE
Q 003458 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEV 212 (818)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V 212 (818)
........-|.|++=+=.++|++.+
T Consensus 89 ------~~~~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 89 ------WEPDSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred ------ccCCCCCCCCcCHHHHHHHHcEEEE
Confidence 0012234456666666677899988
No 77
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=91.12 E-value=0.38 Score=52.43 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=31.5
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeC------C----CcEEEEEeCCCCCCHHHHHH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK------E----KKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~------~----~~~L~I~DNGiGMT~~dL~~ 167 (818)
.-+++.||+||..|... ....+.|.+.... . .-.|.|.|||.||+.+.+..
T Consensus 239 ~~vl~nLl~NA~~~~~~---------------~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 299 (348)
T PRK11073 239 EQVLLNIVRNALQALGP---------------EGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDT 299 (348)
T ss_pred HHHHHHHHHHHHHHhcc---------------CCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhh
Confidence 44678899999988731 1122333322110 0 12589999999999987654
No 78
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=91.05 E-value=0.39 Score=47.83 Aligned_cols=87 Identities=21% Similarity=0.291 Sum_probs=51.8
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..+.|++.||+....+ + .....+.|.+....+.-.+.|.|+|.||+...+...+. ......
T Consensus 45 lav~Ea~~Nai~Hg~~-------~------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~---p~~~~~--- 105 (161)
T PRK04069 45 IAVSEACTNAVQHAYK-------E------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLG---PYDISK--- 105 (161)
T ss_pred HHHHHHHHHHHHhccC-------C------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccC---CCCCCC---
Confidence 4799999999988631 0 11234566666666666799999999999776543221 000000
Q ss_pred hhhhcCCCCccccccccceeeeeeccEEEEEE
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVIS 214 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~S 214 (818)
..+... .-|+|++-+-.++|++.+.+
T Consensus 106 ----~~~~~~--~~G~GL~li~~l~d~v~~~~ 131 (161)
T PRK04069 106 ----PIEDLR--EGGLGLFLIETLMDDVTVYK 131 (161)
T ss_pred ----cccccC--CCceeHHHHHHHHHhEEEEc
Confidence 001111 23677766666778877663
No 79
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=90.80 E-value=0.33 Score=48.47 Aligned_cols=87 Identities=23% Similarity=0.363 Sum_probs=53.0
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..+.|++.||+.+.-. . .....+.|.+..+.+.-.+.|+|+|.||+...+..-++ ....
T Consensus 45 lav~Ea~~Nai~ha~~---------~----~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~---~~~~----- 103 (159)
T TIGR01924 45 IAVSEACTNAVKHAYK---------E----GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLG---PYDG----- 103 (159)
T ss_pred HHHHHHHHHHHHhccC---------C----CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccC---CCCC-----
Confidence 4899999999987621 0 12234566666666566789999999998766543111 1000
Q ss_pred hhhhcCCCCccccccccceeeeeeccEEEEEE
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVIS 214 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~S 214 (818)
......-..-|.|++-+=-++|.+.+.+
T Consensus 104 ----~~~~~~~~~~G~GL~Li~~L~D~v~~~~ 131 (159)
T TIGR01924 104 ----SEPIDDLREGGLGLFLIETLMDEVEVYE 131 (159)
T ss_pred ----CCCcccCCCCccCHHHHHHhccEEEEEe
Confidence 0011111234788887777888888764
No 80
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=90.39 E-value=0.62 Score=55.46 Aligned_cols=54 Identities=22% Similarity=0.466 Sum_probs=39.0
Q ss_pred HHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCc--EEEEEeCCCCCCHHHHHHHH
Q 003458 105 LRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK--ILSIRDRGIGMTKEDLIKNL 169 (818)
Q Consensus 105 LRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~--~L~I~DNGiGMT~~dL~~~L 169 (818)
+-=||+||.+|+++.... ..+...|+++.+..+. .+.|.|||.|++.+++.+.+
T Consensus 605 f~NliKNA~EAi~~~~~~-----------e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~ 660 (712)
T COG5000 605 FGNLLKNAAEAIEAVEAE-----------ERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRAL 660 (712)
T ss_pred HHHHHHhHHHHhhhcccc-----------cCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhc
Confidence 345899999999864321 1112268888876654 57999999999999988644
No 81
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=89.19 E-value=0.59 Score=49.36 Aligned_cols=48 Identities=23% Similarity=0.361 Sum_probs=33.9
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCC--cEEEEEeCCCCCCHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK--KILSIRDRGIGMTKE 163 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~--~~L~I~DNGiGMT~~ 163 (818)
.++-||++||.-+.. +. .....+.|.+..+.++ ..++|.|||.|++.+
T Consensus 125 liv~EL~tNa~Khaf------~~-------~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 125 LIVHELVTNALKHAF------LS-------RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHhcC------CC-------CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 467899999987652 11 2344556666666665 579999999999854
No 82
>PRK13560 hypothetical protein; Provisional
Probab=88.77 E-value=0.44 Score=57.63 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=29.8
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCC---CcEEEEEeCCCCCCHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE---KKILSIRDRGIGMTKE 163 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~---~~~L~I~DNGiGMT~~ 163 (818)
.|.+||+||..+... ......|.|.+... .-.|+|.|||+||+.+
T Consensus 715 il~NLl~NAik~~~~---------------~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 715 IISELLSNALKHAFP---------------DGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred HHHHHHHHHHHhhcc---------------CCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 678999999987531 11223455544332 2468999999999874
No 83
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=86.93 E-value=2.2 Score=48.40 Aligned_cols=124 Identities=23% Similarity=0.270 Sum_probs=74.2
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~ 181 (818)
...+-||.-||..|.=+.- . .++ ..-+++.|.|..++++-+|.|+|-|=|++.+++.. |..-..|....
T Consensus 262 ~ymlfElfKNamrATve~h--~-~~~-----~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~dr-lf~Y~ySTa~~-- 330 (414)
T KOG0787|consen 262 YYMLFELFKNAMRATVEHH--G-DDG-----DELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDR-LFSYMYSTAPA-- 330 (414)
T ss_pred HHHHHHHHHHHHHHHHHHh--c-cCC-----CCCCCeEEEEecCCcceEEEEecCCCCcChhHHHH-HHhhhcccCCC--
Confidence 4678999999999975321 1 111 11456777777777788999999999999999876 33444443221
Q ss_pred HhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEeccccccc
Q 003458 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEY 260 (818)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk~~~~e~ 260 (818)
...++......--||.|+--+=++|. ..+ |...+.. -.+.||-+.+|||.-..+.
T Consensus 331 -~~~d~~~~~plaGfG~GLPisrlYa~-------yf~-----------Gdl~L~S-----leG~GTD~yI~Lk~ls~~~ 385 (414)
T KOG0787|consen 331 -PSSDNNRTAPLAGFGFGLPISRLYAR-------YFG-----------GDLKLQS-----LEGIGTDVYIYLKALSMEA 385 (414)
T ss_pred -CCCCCCCcCcccccccCCcHHHHHHH-------HhC-----------CCeeEEe-----eeccccceEEEeccCCccc
Confidence 00111113466678888743322221 111 1222222 1368999999999765443
No 84
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=86.73 E-value=0.57 Score=57.49 Aligned_cols=126 Identities=22% Similarity=0.307 Sum_probs=74.3
Q ss_pred HHHHhhhcHHHHHH----HHHHhhccCccccCCCCCCccEEEEEEeCCCc--EEEEEeCCCCCCHHHHHHHHHHHhccCc
Q 003458 104 FLRELISNASDALD----KIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKK--ILSIRDRGIGMTKEDLIKNLGTIAKSGT 177 (818)
Q Consensus 104 fLRELIqNA~DA~~----k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~--~L~I~DNGiGMT~~dL~~~LgtIa~Sg~ 177 (818)
.|.=||=||+|.+- .||. . +-.+...|.++.-.+++ .|+|+|+|.|++.+-|.+.- |-+ |-
T Consensus 436 PL~HLvRNAvDHGIE~pE~R~a--------~--GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KA--iEr-Gl 502 (716)
T COG0643 436 PLTHLVRNAVDHGIETPEERRA--------A--GKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKA--IER-GL 502 (716)
T ss_pred cHHHHHhcchhccCCCHHHHHH--------c--CCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHH--HHc-CC
Confidence 45668899999863 3332 1 34566788888766544 47999999999999887532 211 11
Q ss_pred --hhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeC-CCeeE--EEEEcCCCceEEEeCCCCCCCCCCcEEEEE
Q 003458 178 --SAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKADGAFAISEDTWNEPLGRGTEIRLH 252 (818)
Q Consensus 178 --~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~-~d~~~--~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~ 252 (818)
..=.+.|. +.. -+.+=|...|.-|++|+=.|++. |-..+ ..+. -+|..+|.. ..+.||+++|+
T Consensus 503 i~~~~a~~lS---d~E---i~~LIF~PGFSTa~~VtdvSGRGVGMDVVk~~I~~-LgG~I~V~S-----~~G~GT~Fti~ 570 (716)
T COG0643 503 ITEEEAETLS---DEE---ILNLIFAPGFSTAEQVTDVSGRGVGMDVVKTNIEQ-LGGSISVSS-----EPGKGTTFTIR 570 (716)
T ss_pred CChHHhccCC---HHH---HHHHHhcCCCCcchhhhcccCCccCHHHHHHHHHH-cCCEEEEEe-----cCCCCeEEEEe
Confidence 10000011 100 11223777888889998777764 21100 0111 145666654 35899999999
Q ss_pred ec
Q 003458 253 LR 254 (818)
Q Consensus 253 Lk 254 (818)
|-
T Consensus 571 LP 572 (716)
T COG0643 571 LP 572 (716)
T ss_pred cC
Confidence 86
No 85
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=85.48 E-value=0.83 Score=53.61 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=27.4
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE 163 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~ 163 (818)
.++|++.||..+.. ...+.|++..+.+.-.|+|+|||.||+.+
T Consensus 414 il~nlL~NAiKha~-----------------~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 414 VCQEGLNNIVKHAD-----------------ASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHhCC-----------------CCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 45677777765431 12345555554444569999999999853
No 86
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=84.55 E-value=0.75 Score=51.41 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=35.6
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL 165 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL 165 (818)
-+++|.|+||.-.-. ...+.|++..+.+.-+|+|.|||.|.+.+..
T Consensus 282 rivQEaltN~~rHa~-----------------A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 282 RIVQEALTNAIRHAQ-----------------ATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHHHHHhccC-----------------CceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 478999999875532 3456778877777778999999999987654
No 87
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=84.40 E-value=1.4 Score=52.69 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=42.6
Q ss_pred cEEEEEEe--CCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeec----cEEE
Q 003458 138 LEIQIKLD--KEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVA----DYVE 211 (818)
Q Consensus 138 ~~I~I~~d--~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~Va----dkV~ 211 (818)
..|.|+.+ .+..++.|.|||+|++.+-+.+-|. |-+- +. +...+-| -|+|++-|--++ -++.
T Consensus 657 ~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~-iFqR--------l~--s~~~y~g-tG~GL~I~kkI~e~H~G~i~ 724 (750)
T COG4251 657 PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFV-IFQR--------LH--SRDEYLG-TGLGLAICKKIAERHQGRIW 724 (750)
T ss_pred CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHH-HHHh--------cC--chhhhcC-CCccHHHHHHHHHHhCceEE
Confidence 45666644 3457899999999999988776543 2211 11 1223445 899998765554 3556
Q ss_pred EEEeeC
Q 003458 212 VISKHN 217 (818)
Q Consensus 212 V~Sk~~ 217 (818)
|.|+..
T Consensus 725 vEs~~g 730 (750)
T COG4251 725 VESTPG 730 (750)
T ss_pred EeecCC
Confidence 666543
No 88
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=82.69 E-value=3.6 Score=40.89 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=53.3
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~ 181 (818)
.+++-|++.||.-+.-|. + .+...+.|.+..+.+.-.++|+|.|.|+. ++...++--
T Consensus 42 ~~av~E~~~N~v~Ha~~~------~------~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~--------- 98 (146)
T COG2172 42 AIAVSEALTNAVKHAYKL------D------PSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG--------- 98 (146)
T ss_pred HHHHHHHHHHHHHHHhhc------C------CCCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC---------
Confidence 678999999999887430 1 11245667777777777899999997765 444333211
Q ss_pred HhhhhcCCCCccccc---cccceeeeeeccEEEEEEee
Q 003458 182 EKMQTSGDLNLIGQF---GVGFYSVYLVADYVEVISKH 216 (818)
Q Consensus 182 ~~l~~~~~~~~IGqF---GIGF~S~F~VadkV~V~Sk~ 216 (818)
....+.- |.||+-+=-+.|+|.+....
T Consensus 99 --------~~~~~~~~~~G~Gl~l~~~~~D~~~~~~~~ 128 (146)
T COG2172 99 --------DTTAEGLQEGGLGLFLAKRLMDEFSYERSE 128 (146)
T ss_pred --------CCCCcccccccccHHHHhhhheeEEEEecc
Confidence 1222333 66766555577888877543
No 89
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=78.70 E-value=2.8 Score=49.44 Aligned_cols=43 Identities=21% Similarity=0.504 Sum_probs=32.1
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE 163 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~ 163 (818)
.+||-++||.-.-. ..++.|.+....+.-+++|+|||+|++..
T Consensus 485 IvREAlsNa~KHa~-----------------As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 485 IVREALSNAIKHAQ-----------------ASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHhcc-----------------cCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 68999999875431 23456666666666789999999999854
No 90
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=75.02 E-value=9 Score=44.57 Aligned_cols=56 Identities=25% Similarity=0.292 Sum_probs=40.5
Q ss_pred CCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCC--cEEEEEeCCCCCCHHHHHH
Q 003458 98 YSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK--KILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 98 Ys~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~--~~L~I~DNGiGMT~~dL~~ 167 (818)
+-+|...|-=||-||.-|+-+. ..+.+.|.|..-..+ -.+.|.|||.||++.-+..
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~--------------~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~ 405 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEP--------------KRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEG 405 (456)
T ss_pred ccCchHHHhHHHHHHHHHhccc--------------CCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHH
Confidence 5578888888999999998531 223456666654443 4589999999999887653
No 91
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=71.41 E-value=7.3 Score=48.29 Aligned_cols=39 Identities=18% Similarity=0.434 Sum_probs=31.0
Q ss_pred CCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHh
Q 003458 135 NTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIA 173 (818)
Q Consensus 135 ~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa 173 (818)
..++.|.+..+.++-.+.|.|||-|++..++.+-|-.-.
T Consensus 794 ~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~ 832 (890)
T COG2205 794 GSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFY 832 (890)
T ss_pred CCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhh
Confidence 455677777777777899999999999999998775433
No 92
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=69.90 E-value=5.7 Score=44.90 Aligned_cols=84 Identities=24% Similarity=0.433 Sum_probs=50.5
Q ss_pred cEEEEEEeCCC--cEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEe
Q 003458 138 LEIQIKLDKEK--KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISK 215 (818)
Q Consensus 138 ~~I~I~~d~~~--~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk 215 (818)
.+|.+.+.... -.|+|.|+|+|+++.++.+-|-+.-+--+ ......|--|+|++-+ .++ |
T Consensus 362 g~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdk----------ARsR~~gGTGLGLaIa----kei-V--- 423 (459)
T COG5002 362 GRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDK----------ARSRKMGGTGLGLAIA----KEI-V--- 423 (459)
T ss_pred CeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhh----------hhhhcCCCCchhHHHH----HHH-H---
Confidence 35666555433 35899999999999999987755433211 1123457788888532 221 1
Q ss_pred eCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEec
Q 003458 216 HNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (818)
Q Consensus 216 ~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk 254 (818)
....+.+|...- .+.||+|...|.
T Consensus 424 -~~hgG~iWA~s~--------------~gkgtt~~ftLP 447 (459)
T COG5002 424 -QAHGGRIWAESE--------------EGKGTTFSFTLP 447 (459)
T ss_pred -HHhCCeEEEecc--------------cCCceEEEEEec
Confidence 133457785331 245888777764
No 93
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=69.49 E-value=5.8 Score=46.34 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=16.8
Q ss_pred cEEEEEEe-CCCcEEEEEeCCCCCCH
Q 003458 138 LEIQIKLD-KEKKILSIRDRGIGMTK 162 (818)
Q Consensus 138 ~~I~I~~d-~~~~~L~I~DNGiGMT~ 162 (818)
+.|.+... ...-.|.|.|||+||+.
T Consensus 492 i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 492 IAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred EEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 44554444 22346899999999985
No 94
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=69.24 E-value=8.4 Score=44.93 Aligned_cols=49 Identities=33% Similarity=0.215 Sum_probs=35.8
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeC---CCcEEEEEeCCCCCCHHHHHHHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNL 169 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~---~~~~L~I~DNGiGMT~~dL~~~L 169 (818)
++--||-||+|||.. ..+.|.|.++. +.-.|-|.|||-|...+=+.+.|
T Consensus 568 VlvNl~~NaldA~~h-----------------~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl 619 (673)
T COG4192 568 VLVNLIVNALDASTH-----------------FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLL 619 (673)
T ss_pred HHHHHHHHHHhhhcc-----------------CCceEEEEeecCcccceEEEEecCCCCCchhHHHHhc
Confidence 556789999999962 12567777665 34579999999999986665433
No 95
>PRK13559 hypothetical protein; Provisional
Probab=66.50 E-value=6.2 Score=43.35 Aligned_cols=44 Identities=23% Similarity=0.172 Sum_probs=26.8
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEE--eCC--CcEEEEEeCCCCCCH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL--DKE--KKILSIRDRGIGMTK 162 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~--d~~--~~~L~I~DNGiGMT~ 162 (818)
.+.|||.||+.+.. + ......|+|.+ ... .-.|.+.|||.|++.
T Consensus 271 vl~nLi~NA~k~~~------~---------~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~ 318 (361)
T PRK13559 271 VLHELAVNAIKHGA------L---------SADQGRISISWKPSPEGAGFRIDWQEQGGPTPP 318 (361)
T ss_pred HHHHHHHhHHHhcc------c---------cCCCcEEEEEEEecCCCCeEEEEEECCCCCCCC
Confidence 67799999976632 0 11123455544 332 346888999998654
No 96
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=63.66 E-value=11 Score=46.57 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=67.4
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH--------HHHHHhcc
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIAKS 175 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~--------~LgtIa~S 175 (818)
..-|.+-||.| |.| +++. -.|.+.++++.+.|.|.+||-|+.-..... .||+.-.|
T Consensus 57 i~dEilvNaad---k~r-----d~~m--------~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Llts 120 (842)
T KOG0355|consen 57 IFDEILVNAAD---KQR-----DPKM--------NTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTS 120 (842)
T ss_pred HHHHHhhcccc---ccc-----CCCc--------ceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhc
Confidence 45689999999 333 3332 378889999999999999999997544321 24444444
Q ss_pred CchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeC--CCe-eEEEEEcCC---CceEEEeCCCCCCCCCCcEE
Q 003458 176 GTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN--DDK-QYVWESKAD---GAFAISEDTWNEPLGRGTEI 249 (818)
Q Consensus 176 g~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~--~d~-~~~W~s~~~---~~f~i~~~~~~~~~~~GT~I 249 (818)
+. | ......-.-|+-|.|--=|=.++-+..|.|-.. ... ...|..+-. +.+ +... ..+.+|+|
T Consensus 121 sn--y----~d~ekK~tggrngygakLcniFs~~f~~Et~d~~~~~~~kQ~w~~nm~~~~~~~-i~~~----~~~~yTki 189 (842)
T KOG0355|consen 121 SN--Y----DDDEKKVTGGRNGYGAKLCNIFSTEFTVETADREYKMAFKQTWINNMTRDEEPK-IVPS----TDEDYTKI 189 (842)
T ss_pred cc--c----CCCccccccCCCccceeeeeeccccceeeeeehHhHHHHHHhhhcCCcccCCce-eecC----CCCCcceE
Confidence 32 1 001111233555555555555555555555432 211 245655432 222 2221 12339998
Q ss_pred EEE
Q 003458 250 RLH 252 (818)
Q Consensus 250 ~L~ 252 (818)
++.
T Consensus 190 tF~ 192 (842)
T KOG0355|consen 190 TFS 192 (842)
T ss_pred EeC
Confidence 875
No 97
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=56.73 E-value=8.3 Score=47.70 Aligned_cols=95 Identities=26% Similarity=0.276 Sum_probs=56.0
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEE--eCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKL--DKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~--d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f 180 (818)
-.+-|||.||.|=+..++-. + .+. .-.+..+|.|.. -..++ |.|+|.||..+-+...+.....+ +.++
T Consensus 149 ~a~aeLldnalDEi~~~~tf-~---~vd--~I~p~~d~~i~a~~v~~~~---~s~~gg~~~~~~i~~~m~l~~~~-k~e~ 218 (775)
T KOG1845|consen 149 GAIAELLDNALDEITNGATF-V---RVD--YINPVMDIFIRALVVQLKR---ISDDGGGMKPEVIRKCMSLGYSS-KKEA 218 (775)
T ss_pred Chhhhhccccccccccccce-E---Eee--eecccccccceeEEeeccc---eeccccccCHHHHHHHHHhhhhh-hhhh
Confidence 46789999999977532210 0 000 111222222211 11111 67999999998888777554433 2221
Q ss_pred HHhhhhcCCCCccccccccceeeee-eccEEEEEEee
Q 003458 181 VEKMQTSGDLNLIGQFGVGFYSVYL-VADYVEVISKH 216 (818)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~F~-VadkV~V~Sk~ 216 (818)
..-+||+|.||.++-| ++-.+.|.+|.
T Consensus 219 ---------~~tv~q~~~gfktst~rlGa~~i~~~R~ 246 (775)
T KOG1845|consen 219 ---------NSTVGQYGNGFKTSTMRLGADAIVFSRC 246 (775)
T ss_pred ---------hhhhhhhccccccchhhhccceeEeehh
Confidence 2468999999998766 67777777873
No 98
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=43.26 E-value=26 Score=35.00 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=20.9
Q ss_pred ccceeeCCCChHHHHHHHhhccCCCch
Q 003458 710 KRVLEINPRHPIIKELRERVVKDPEDA 736 (818)
Q Consensus 710 kkiLEINp~HPlIk~L~~~~~~d~~d~ 736 (818)
-|-=+.+|+||||++|..+...|-.++
T Consensus 13 gRLE~d~p~~plv~~~~~L~q~Nms~~ 39 (147)
T PF06112_consen 13 GRLEADYPNHPLVAKLQALPQNNMSDA 39 (147)
T ss_pred ceecccCCCCHHHHHHHhhccCCCCHH
Confidence 344578999999999999877665554
No 99
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=39.57 E-value=50 Score=32.92 Aligned_cols=53 Identities=11% Similarity=0.315 Sum_probs=41.0
Q ss_pred ChHHHHHHHhhccCCCchhHHHHHHHHHHHH---HHhcCC--CCCCHHHHHHHHHHHHHhh
Q 003458 719 HPIIKELRERVVKDPEDAGVQQTAQLIYQTA---LMESGF--SLNDPKDFASRIYSTVKSS 774 (818)
Q Consensus 719 HPlIk~L~~~~~~d~~d~~~~~~a~~Lyd~A---lL~sG~--~l~D~~~fa~ri~~ll~~~ 774 (818)
||.|++|.++++. ++.+..++.++|++. .--.|. .+.|=..|..-++.+|..+
T Consensus 2 ~p~vqefk~lIe~---dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i~t~A 59 (141)
T PF12588_consen 2 HPVVQEFKDLIES---DPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHIMTTA 59 (141)
T ss_pred ChHHHHHHHHHhc---CHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHHHhhC
Confidence 8999999999964 568899999999991 112242 4688888888888888754
No 100
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning]
Probab=36.13 E-value=29 Score=43.12 Aligned_cols=52 Identities=27% Similarity=0.456 Sum_probs=36.1
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceee-eeeccEEEEEEeeC
Q 003458 151 LSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSV-YLVADYVEVISKHN 217 (818)
Q Consensus 151 L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~-F~VadkV~V~Sk~~ 217 (818)
|+..|+|.||+.+++...+- | ......||++|=|+.|. +-.+..+.+.|+..
T Consensus 2 l~~~Ddg~Gms~d~a~~~~~---------f------~~~~~~ig~ygnG~ksgs~r~gkd~~~~tk~~ 54 (775)
T KOG1845|consen 2 LCFLDDGLGMSPDEAPKAIN---------F------AVGLYGIGDYGNGLKSGSMRIGKDFILFTKKE 54 (775)
T ss_pred cccccCCCCcCchhhhhhhh---------h------cccccccccccCcccccccccCcccceeeccc
Confidence 57889999999999876332 2 12345678888887774 44666666666654
No 101
>COG1578 Uncharacterized conserved protein [Function unknown]
Probab=31.61 E-value=2.9e+02 Score=30.59 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=34.5
Q ss_pred HHHHHhHHhhhhcc--cCHHhHHHHhccccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhc
Q 003458 519 FWNEFGKSIKLGII--EDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKK 596 (818)
Q Consensus 519 f~~~f~~~iK~G~~--eD~~nr~~lakLLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~k 596 (818)
...--|..|-.|+. ....+.+.+-+++.=+=.- --.....++.+.. .|||++..--+-+-.-+.+|.++..
T Consensus 105 k~ai~GN~iDfgv~G~~~~~lee~~~~~~~~~l~i-----~d~~k~~~~l~~a--~VlYl~DNaGEi~FD~vlie~ik~~ 177 (285)
T COG1578 105 KLAIVGNVIDFGVLGFSPFDLEEEVEKLLDAELYI-----DDSPKLLELLKNA--SVLYLTDNAGEIVFDKVLIEVIKEL 177 (285)
T ss_pred HHHHHhcceeeccccCCHhHHHHHHHHhhcCcccc-----cchHHHHHHhccC--cEEEEecCCccHHHHHHHHHHHHhc
Confidence 33445566666666 3455556665554321111 0112233343333 5666655443433334444444444
Q ss_pred CCeEEe
Q 003458 597 NYEVIF 602 (818)
Q Consensus 597 G~EVL~ 602 (818)
|.+|.+
T Consensus 178 ~~~vv~ 183 (285)
T COG1578 178 GKKVVV 183 (285)
T ss_pred CCceEE
Confidence 444443
No 102
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=30.23 E-value=55 Score=37.09 Aligned_cols=57 Identities=18% Similarity=0.349 Sum_probs=37.5
Q ss_pred CCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHH
Q 003458 97 LYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLI 166 (818)
Q Consensus 97 LYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~ 166 (818)
|-+...+.|--.+|-|.--+++ + .....+.|.+.-..+.-+++|+|||.|++..+..
T Consensus 352 l~~e~~talyRv~QEaltNIEr--H-----------a~Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~ 408 (459)
T COG4564 352 LKPEVATALYRVVQEALTNIER--H-----------AGATRVTILLQQMGDMVQLMVRDNGVGFSVKEAL 408 (459)
T ss_pred CCcHHHHHHHHHHHHHHHHHHh--h-----------cCCeEEEEEeccCCcceEEEEecCCCCccchhhc
Confidence 3344556666677877777763 2 1123455666555566789999999999877654
No 103
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=29.32 E-value=1.6e+02 Score=26.29 Aligned_cols=56 Identities=16% Similarity=0.331 Sum_probs=42.6
Q ss_pred CCceEEEEeCCCHH-HHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeec
Q 003458 569 GQKDIFYITGANKE-QLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVS 627 (818)
Q Consensus 569 ~Qk~IYY~tg~s~~-~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~ 627 (818)
+.+.+|.++|+++. .+..+|+.-. .|..|||..+.+++.+...|.....++..-|.
T Consensus 24 ~~~~v~ia~g~~~~Dalsa~~~a~~---~~~PIll~~~~l~~~~~~~l~~~~~~~v~iiG 80 (92)
T PF04122_consen 24 KSDKVYIASGDNFADALSASPLAAK---NNAPILLVNNSLPSSVKAFLKSLNIKKVYIIG 80 (92)
T ss_pred CCCEEEEEeCcchhhhhhhHHHHHh---cCCeEEEECCCCCHHHHHHHHHcCCCEEEEEC
Confidence 56788989998864 4455555433 68899999999999999999988767766653
No 104
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=26.71 E-value=6.5e+02 Score=25.41 Aligned_cols=135 Identities=19% Similarity=0.257 Sum_probs=80.0
Q ss_pred ccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCCeEEecCCCc-----hHHHHHhhhhcC
Q 003458 545 LRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPV-----DEYLMQYLMDYE 619 (818)
Q Consensus 545 LrF~ss~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpi-----DE~~i~~L~ef~ 619 (818)
++|.|-. +..--+++.+...-+. ..+.++.-.... -..|++||+.-.+ |+-+...|.+.+
T Consensus 2 IvYsS~T--GNTkkvA~aI~~~l~~-~~~~~~~~~~~~------------~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~ 66 (160)
T PF12641_consen 2 IVYSSRT--GNTKKVAEAIAEALGA-KDIVSVEEPPED------------LEDYDLIFLGFWIDKGTPDKDMKEFLKKLK 66 (160)
T ss_pred EEEECCC--ChHHHHHHHHHHHCCC-ceeEeccccccC------------CCCCCEEEEEcCccCCCCCHHHHHHHHHcc
Confidence 3444443 3456777877665555 666666432210 3578999998866 566777788888
Q ss_pred CCceEeeccccccCCCCcchHHHHHHHHHHHHHHHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccc
Q 003458 620 DKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLS 699 (818)
Q Consensus 620 gkkf~~V~k~~~~l~~~ek~~~~~~~~~~L~~~lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~ 699 (818)
||+..-....+..- ..+-+..+++-++..|... +++..+ .+- ++-++..|...|+.
T Consensus 67 ~KkV~lF~T~G~~~--------~s~~~~~~~~~~~~~~~~~--------~~~lg~--f~C--qGk~~~~~~e~~~~---- 122 (160)
T PF12641_consen 67 GKKVALFGTAGAGP--------DSEYAKKILKNVEALLPKG--------NEILGT--FMC--QGKMDPKVIEKYKK---- 122 (160)
T ss_pred CCeEEEEEecCCCC--------chHHHHHHHHHHHHhhccC--------Ceecce--EEe--CCcCCHHHHHHHHh----
Confidence 98887777766542 1223444444445555333 232222 222 33456666554441
Q ss_pred cchhhhhcccccceeeCCCChHHHHHHHhhc
Q 003458 700 DASKQAYMRGKRVLEINPRHPIIKELRERVV 730 (818)
Q Consensus 700 d~~~~~~~~~kkiLEINp~HPlIk~L~~~~~ 730 (818)
.+.-||.|+.+..++++..
T Consensus 123 ------------~~~~~~~~~~~~~~~~~~~ 141 (160)
T PF12641_consen 123 ------------MLPKNPPHAMTPERLARFD 141 (160)
T ss_pred ------------ccCCCCCCcccHHHHHHHH
Confidence 1567899999999988764
No 105
>COG2865 Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]
Probab=20.98 E-value=3.3e+02 Score=32.37 Aligned_cols=87 Identities=28% Similarity=0.409 Sum_probs=54.5
Q ss_pred cCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCC---CCCCHHHHHHHHHHH
Q 003458 96 SLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRG---IGMTKEDLIKNLGTI 172 (818)
Q Consensus 96 sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNG---iGMT~~dL~~~LgtI 172 (818)
..+.-|..+|||+|.||.=.-+ | +.+ ...+.|.|. ...|.|+-.| .|||..++.+.
T Consensus 266 ~v~dyP~~alREai~NAv~HRD---Y---s~~-------~~~v~I~iy----dDRieI~NPGgl~~gi~~~~l~~~---- 324 (467)
T COG2865 266 EVWDYPLEALREAIINAVIHRD---Y---SIR-------GRNVHIEIY----DDRIEITNPGGLPPGITPEDLLKG---- 324 (467)
T ss_pred ecccCCHHHHHHHHHHHHHhhc---c---ccC-------CCceEEEEE----CCeEEEECCCCCCCCCChhHcccC----
Confidence 3455689999999999985432 2 111 124455553 3579999877 69999998763
Q ss_pred hccCchh-HHHhhhhcCCCCccccccccceeeeee
Q 003458 173 AKSGTSA-FVEKMQTSGDLNLIGQFGVGFYSVYLV 206 (818)
Q Consensus 173 a~Sg~~~-f~~~l~~~~~~~~IGqFGIGF~S~F~V 206 (818)
+|-.+. .+.++ -.+.++|=+.|.|+-=.|-.
T Consensus 325 -~s~~RNp~LA~~--l~~~~liE~~GSGi~rm~~~ 356 (467)
T COG2865 325 -RSKSRNPVLAKV--LRDMGLIEERGSGIRRMFDL 356 (467)
T ss_pred -CCcccCHHHHHH--HHHhhhHHHhCccHHHHHHH
Confidence 443332 12221 13567899999998554444
No 106
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=20.09 E-value=1.3e+02 Score=34.74 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=20.9
Q ss_pred CCccEEEEEEeCCCcEEEEEeCCCCCC
Q 003458 135 NTKLEIQIKLDKEKKILSIRDRGIGMT 161 (818)
Q Consensus 135 ~~~~~I~I~~d~~~~~L~I~DNGiGMT 161 (818)
...+.|.+..+.+.-.+.|.|||+|++
T Consensus 428 AS~V~i~l~~~~e~l~Lei~DdG~Gl~ 454 (497)
T COG3851 428 ASAVTIQLWQQDERLMLEIEDDGSGLP 454 (497)
T ss_pred cceEEEEEeeCCcEEEEEEecCCcCCC
Confidence 345677777766667799999999986
Done!