Query 003458
Match_columns 818
No_of_seqs 297 out of 1755
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 01:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cg9_A ATP-dependent molecular 100.0 3E-173 9E-178 1504.0 47.0 669 77-776 3-677 (677)
2 2o1u_A Endoplasmin; GRP94, HSP 100.0 3E-160 9E-165 1394.1 55.2 630 77-781 22-665 (666)
3 2ioq_A Chaperone protein HTPG; 100.0 1E-152 5E-157 1325.4 49.1 608 77-772 4-623 (624)
4 1y4s_A Chaperone protein HTPG; 100.0 2E-138 6E-143 1194.6 36.5 543 77-697 4-558 (559)
5 3q6m_A Heat shock protein HSP 100.0 2E-124 8E-129 1042.4 36.4 411 349-786 3-417 (448)
6 3hjc_A Heat shock protein 83-1 100.0 1E-123 4E-128 1040.4 38.2 413 342-781 12-428 (444)
7 2cge_A ATP-dependent molecular 100.0 3E-118 1E-122 992.3 36.7 400 349-776 1-405 (405)
8 1hk7_A Heat shock protein HSP8 100.0 1.6E-91 5.5E-96 741.5 22.4 284 349-659 1-288 (288)
9 2gq0_A Chaperone protein HTPG; 100.0 3.8E-91 1.3E-95 743.2 23.1 290 349-681 2-295 (303)
10 3pry_A Heat shock protein HSP 100.0 1.4E-88 4.6E-93 713.5 24.2 263 347-635 1-263 (268)
11 1usu_A Heat shock protein HSP8 100.0 7.8E-88 2.7E-92 705.8 21.5 257 347-629 1-257 (260)
12 1y6z_A Heat shock protein, put 100.0 2.3E-86 7.7E-91 698.1 22.5 261 347-630 1-263 (263)
13 3peh_A Endoplasmin homolog; st 100.0 2E-63 6.8E-68 527.3 24.2 264 71-347 17-281 (281)
14 1qy5_A Endoplasmin; GRP94, NEC 100.0 1.2E-58 4E-63 490.9 18.9 261 75-347 3-269 (269)
15 3ied_A Heat shock protein; HSP 100.0 6.8E-58 2.3E-62 476.6 17.0 208 76-285 23-271 (272)
16 3nmq_A Heat shock protein HSP 100.0 1.1E-56 3.8E-61 467.0 22.1 211 77-290 16-226 (239)
17 3o0i_A HSP90AA1 protein; HSP90 100.0 1.7E-52 5.8E-57 439.6 21.7 237 45-295 16-252 (256)
18 3t0h_A Heat shock protein HSP 100.0 1.2E-50 4.1E-55 420.4 20.7 216 76-294 8-223 (228)
19 2gqp_A Endoplasmin; GRP94, HSP 100.0 3.7E-50 1.3E-54 419.0 19.8 210 75-287 7-221 (236)
20 2wer_A ATP-dependent molecular 100.0 1.7E-46 6E-51 387.0 20.8 212 77-290 3-214 (220)
21 1yc1_A HSP 86, heat shock prot 100.0 2.3E-46 7.8E-51 396.1 21.0 213 77-292 45-257 (264)
22 2ior_A Chaperone protein HTPG; 100.0 4.2E-41 1.4E-45 350.5 17.3 204 77-285 24-232 (235)
23 1sf8_A Chaperone protein HTPG; 100.0 1.1E-33 3.7E-38 268.1 12.0 115 647-772 11-125 (126)
24 1b63_A MUTL; DNA mismatch repa 99.7 2.2E-17 7.6E-22 180.0 10.9 150 95-276 19-183 (333)
25 1h7s_A PMS1 protein homolog 2; 99.5 1.4E-14 4.8E-19 159.8 6.8 165 86-278 15-196 (365)
26 3h4l_A DNA mismatch repair pro 99.4 5.2E-14 1.8E-18 155.3 3.8 152 95-277 20-185 (367)
27 3na3_A DNA mismatch repair pro 99.3 9E-13 3.1E-17 144.4 3.3 155 90-276 17-187 (348)
28 3fv5_A DNA topoisomerase 4 sub 98.9 5.4E-09 1.9E-13 106.4 9.8 160 101-285 18-190 (201)
29 1mu5_A Type II DNA topoisomera 98.8 2.2E-09 7.5E-14 122.1 6.9 147 103-274 35-196 (471)
30 2zbk_B Type 2 DNA topoisomeras 98.8 5.9E-09 2E-13 120.1 7.1 148 103-275 34-196 (530)
31 1kij_A DNA gyrase subunit B; t 98.7 1.3E-08 4.5E-13 113.2 7.0 148 102-274 34-193 (390)
32 1s16_A Topoisomerase IV subuni 98.5 1.9E-07 6.6E-12 103.8 10.6 157 102-284 33-203 (390)
33 2q2e_B Type 2 DNA topoisomeras 98.5 3E-08 1E-12 116.1 3.9 155 102-284 39-211 (621)
34 1ei1_A DNA gyrase B, GYRB; ATP 98.4 4.4E-07 1.5E-11 101.0 8.6 157 100-284 34-205 (391)
35 4duh_A DNA gyrase subunit B; s 98.3 6.4E-07 2.2E-11 92.4 7.8 157 101-286 36-208 (220)
36 1zxm_A TOPO IIA ATPase, DNA to 98.3 1.1E-06 3.9E-11 97.9 9.4 149 103-274 55-219 (400)
37 3cwv_A DNA gyrase, B subunit, 98.3 1.6E-06 5.6E-11 95.7 10.4 152 101-284 31-193 (369)
38 4emv_A DNA topoisomerase IV, B 98.3 9.9E-07 3.4E-11 91.4 7.3 157 102-286 42-214 (226)
39 3lnu_A Topoisomerase IV subuni 98.0 1E-05 3.5E-10 90.4 7.9 156 101-284 51-222 (408)
40 3ttz_A DNA gyrase subunit B; p 97.8 3.4E-05 1.2E-09 78.3 8.2 141 101-285 32-180 (198)
41 1pvg_A DNA topoisomerase II; G 97.5 0.00013 4.3E-09 82.0 8.4 128 103-255 67-208 (418)
42 1th8_A Anti-sigma F factor; SP 97.1 0.0003 1E-08 65.7 4.5 84 103-215 42-125 (145)
43 4ew8_A Sensor protein DIVL; si 97.1 0.00021 7.2E-09 72.8 3.6 49 103-167 158-206 (268)
44 1i58_A Chemotaxis protein CHEA 97.1 0.00025 8.4E-09 69.1 3.3 57 104-167 51-110 (189)
45 1id0_A PHOQ histidine kinase; 97.0 0.00017 5.8E-09 67.2 1.8 47 103-167 47-93 (152)
46 1ysr_A Sensor-type histidine k 97.0 0.00035 1.2E-08 65.2 3.8 74 104-207 50-123 (150)
47 3d36_A Sporulation kinase B; G 97.0 0.00029 9.9E-09 70.3 3.4 74 103-207 126-199 (244)
48 2btz_A Pyruvate dehydrogenase 97.0 0.00053 1.8E-08 75.4 5.8 116 103-255 234-349 (394)
49 3jz3_A Sensor protein QSEC; he 97.0 0.00018 6.1E-09 70.8 1.3 97 103-255 120-216 (222)
50 2e0a_A Pyruvate dehydrogenase 96.9 0.00051 1.7E-08 75.6 4.5 117 103-255 233-349 (394)
51 2q8g_A [pyruvate dehydrogenase 96.9 0.00058 2E-08 75.5 4.9 117 103-255 246-362 (407)
52 3ehh_A Sensor kinase (YOCF pro 96.9 0.00095 3.2E-08 65.9 5.7 45 104-165 134-178 (218)
53 1y8o_A [pyruvate dehydrogenase 96.8 0.0005 1.7E-08 76.4 3.2 118 103-255 256-373 (419)
54 3sl2_A Sensor histidine kinase 96.8 0.00019 6.6E-09 69.1 -0.3 102 104-254 47-150 (177)
55 1gkz_A [3-methyl-2-oxobutanoat 96.6 0.00056 1.9E-08 74.9 1.8 58 102-167 240-297 (388)
56 1b3q_A Protein (chemotaxis pro 96.5 0.0032 1.1E-07 69.2 6.8 55 105-167 111-169 (379)
57 1bxd_A ENVZ(290-450), protein 96.4 0.0008 2.7E-08 63.6 1.5 74 104-207 51-124 (161)
58 1r62_A Nitrogen regulation pro 96.4 0.0017 5.8E-08 60.5 3.2 51 104-169 52-112 (160)
59 3a0y_A Sensor protein; ATP-LID 96.3 0.0011 3.9E-08 61.3 1.8 48 104-167 51-98 (152)
60 4gfh_A DNA topoisomerase 2; to 96.2 0.0077 2.6E-07 75.3 9.1 143 104-273 63-223 (1177)
61 2c2a_A Sensor histidine kinase 95.7 0.0041 1.4E-07 63.1 2.8 52 103-167 141-192 (258)
62 3ehg_A Sensor kinase (YOCF pro 95.3 0.019 6.4E-07 52.4 5.5 45 104-165 44-88 (128)
63 3zxq_A Hypoxia sensor histidin 94.5 0.019 6.6E-07 51.5 3.1 43 104-164 43-85 (124)
64 3zxo_A Redox sensor histidine 93.9 0.017 5.7E-07 52.2 1.5 43 104-164 47-89 (129)
65 3a0r_A Sensor protein; four he 93.7 0.032 1.1E-06 58.5 3.4 48 104-167 248-295 (349)
66 4fpp_A Phosphotransferase; fou 84.3 0.75 2.6E-05 46.8 4.4 45 105-165 151-197 (247)
67 3ke6_A Protein RV1364C/MT1410; 77.7 2.9 0.0001 45.9 6.5 49 102-163 299-348 (399)
68 1ixm_A SPO0B, protein (sporula 63.5 2.9 9.9E-05 41.8 2.1 55 105-169 110-166 (192)
No 1
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-173 Score=1503.96 Aligned_cols=669 Identities=52% Similarity=0.877 Sum_probs=571.9
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeC
Q 003458 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (818)
Q Consensus 77 ~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (818)
.++|.||||+++||+||+++||||+++|||||||||+||++|+||+++++++++ ....++.|+|.+++++++|+|+||
T Consensus 3 ~e~~~Fqae~~~Ll~li~~sLYsnkeifLRELIsNA~DA~~k~r~~~ltd~~~~--~~~~~~~I~I~~d~~~~~I~I~Dn 80 (677)
T 2cg9_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQL--ETEPDLFIRITPKPEQKVLEIRDS 80 (677)
T ss_dssp CEEEECCCCHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHTSSCTTTT--TTCCCCCEEEEEEGGGTEEEEEEC
T ss_pred ccceehhhhHHHHHHHHHHhCCCCchHHHHHHhhCHHHHHHHHHHHhccChhhc--cCCCCcEEEEEEeCCCCEEEEEEC
Confidence 478999999999999999999999999999999999999999999999999877 566778999999998999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEe
Q 003458 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (818)
Q Consensus 157 GiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~ 236 (818)
|+|||++||.++|++||+||++.|+++++.+.+...||||||||||+||||++|+|+||++++.++.|+++|++.|+|.+
T Consensus 81 GiGMt~edl~~~l~tIA~Sgt~~f~~kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~ 160 (677)
T 2cg9_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTL 160 (677)
T ss_dssp SCCCCHHHHHGGGSSSSSCTTHHHHSCCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEE
T ss_pred CCCCCHHHHHHHHHhHhccccHHHHHhhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEee
Confidence 99999999999999999999999998887556778999999999999999999999999998789999999999999998
Q ss_pred CCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHh-hhhhhhhc
Q 003458 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKA-EKEEETEK 315 (818)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 315 (818)
++.+...++||+|+|||++++.+||+.++|+++|++||+||+|||+++..++.+.+++++++++++.++.. ++++.+++
T Consensus 161 ~~~~~~~~~GT~I~L~Lk~d~~e~l~~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~e~~~~~~~~~~e~~~~~~~~ 240 (677)
T 2cg9_A 161 DEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVEKEVPIPEEEKKDEEKKDEEKKDEDDK 240 (677)
T ss_dssp CCSSCCCSSEEEEEEEECTTGGGGGCHHHHHHHHHHHSTTCSSCEEECCCCCCCCC------------------------
T ss_pred cCCCCCCCCCeEEEEEEcchhhccccHHHHHHHHHHHHhhCCCCeEEeeccccccCcCcchhhhcccccccccccccccc
Confidence 64345678999999999999999999999999999999999999999876665544433221100000000 00000001
Q ss_pred ccCCCCccccccccCCCcccceecccceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceee
Q 003458 316 SESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEF 395 (818)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f 395 (818)
+.+. +++++++++++++|++++++++|+.||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|
T Consensus 241 ~~~~-~~~~~~~~~~~~~k~~~~~~~e~e~iN~~~plW~r~~~eit~eeY~~FYk~l~~d~--~~pl~~~H~~veg~~~~ 317 (677)
T 2cg9_A 241 KPKL-EEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEF 317 (677)
T ss_dssp ----------------------CCCCCBCCCCCCCCTTSSCGGGCCTTTHHHHHHHHTTCC--SCCSEEEEEEECSSSCE
T ss_pred cccc-ccccchhhhcccccccccccccceecccCCCCcccCcccCCHHHHHHHHHHhcCCC--CCchheEEecccccceE
Confidence 1111 11111111345677888888999999999999999999999999999999999999 99999999999999999
Q ss_pred EEEEEecCCCCcchhhhhhcccccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHH
Q 003458 396 KAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKK 475 (818)
Q Consensus 396 ~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~ 475 (818)
+||||||+++|+|+|++ ...+++|+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.
T Consensus 318 ~~lLyiP~~ap~d~~~~--~~~~~~ikLYv~rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~ 395 (677)
T 2cg9_A 318 RAILFIPKRAPFDLFES--KKKKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKN 395 (677)
T ss_dssp EEEEEECSSCCC-----------CCSEEEETTEEEEECSTTTSCGGGTTCEEEEEESSCCCCBTTTBCCCHHHHHHHHHH
T ss_pred EEEEEEcCCCchhhhhh--hhccCCeEEEEeeeEeecChhhhchHHHHHheeecccCCCCcccCHHHhccCHHHHHHHHH
Confidence 99999999999999974 2457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCc
Q 003458 476 LIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGK 555 (818)
Q Consensus 476 l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~~~ 555 (818)
|++|++++|.+||++ +++|.+||++||++||+|+++|..||++|++||||+||+++++
T Consensus 396 l~kkvl~~l~~la~~----------------------~e~y~~f~~~fg~~lK~G~~eD~~nr~~l~~llrf~ss~~~~~ 453 (677)
T 2cg9_A 396 IVKKLIEAFNEIAED----------------------SEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDE 453 (677)
T ss_dssp HHHHHHHHHHHHHSC----------------------SHHHHHHHHHHHHHHHHHHHHCSSSHHHHHTTCCBEESSCTTS
T ss_pred HHHHHHHHHHHHHhC----------------------HHHHHHHHHHHhHHhhhhhccCHHHHHHHHhheEeeecCCCCc
Confidence 999999999999976 4699999999999999999999999999999999999997778
Q ss_pred ccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccccCCC
Q 003458 556 LTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGK 635 (818)
Q Consensus 556 ~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~ 635 (818)
++||++||+|||++|+.|||+||+|++++++|||+|.|++||||||||++||||||||+|.+|+|++|++|+++ ++|++
T Consensus 454 ~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp~~E~~~~kg~EVl~l~~~iDe~~~~~l~e~~gk~~~~v~k~-l~l~~ 532 (677)
T 2cg9_A 454 LTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEE 532 (677)
T ss_dssp CBCSTTHHHHSCTTCCEEEEEECSCSTTTTTCGGGHHHHTTTCCEEEECSHHHHHHHGGGSCBTTBEEECSCCC-CCSCS
T ss_pred eeeHHHHHHhccccCceEEEEeCCCHHHHHhCcHHHHHHhCCceEEEeCCchHHHHHHHHHHhCCceEEEeecc-ccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 98874
Q ss_pred Cc--ch--HHHHHHHHHHHHHHHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhhhccccc
Q 003458 636 DT--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKR 711 (818)
Q Consensus 636 ~e--k~--~~~~~~~~~L~~~lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~~~~~kk 711 (818)
++ ++ ++.+++|++|++|||++|+++ |.+|++|+||++||||||++++|||++|+|||++|+++++.+..++..++
T Consensus 533 ~e~~~~~~~~~~~~~~~L~~~~k~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~s~~merimka~~~~d~~~~~~~~~k~ 611 (677)
T 2cg9_A 533 TDEEKAEREKEIKEYEPLTKALKEILGDQ-VEKVVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKK 611 (677)
T ss_dssp STTSSTTHHHHHGGGHHHHHHHHHTTCSS-CSCEECCSSCSSSCEEEECCTTSCCHHHHHHHTTCC-------------C
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHhcCCc-ceEEEEeccCCCCCEEEEeCcccccHHHHHHHHHhhccccccccccccCc
Confidence 33 32 556789999999999999999 99999999999999999999999999999999999876655456778899
Q ss_pred ceeeCCCChHHHHHHHhhccC-CCchhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC
Q 003458 712 VLEINPRHPIIKELRERVVKD-PEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLN 776 (818)
Q Consensus 712 iLEINp~HPlIk~L~~~~~~d-~~d~~~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l~ 776 (818)
+|||||+||||++|+.+...+ ++++.++++|++|||+|+|++|+.++||+.|++||++||.++||
T Consensus 612 ~LeiNp~hpli~~L~~~~~~d~~~~~~~~~~~~~Lyd~All~~G~~l~dp~~f~~ri~~ll~~~l~ 677 (677)
T 2cg9_A 612 TFEISPKSPIIKELKKRVDEGGAQDKTVKDLTKLLYETALLTSGFSLDEPTSFASRINRLISLGLN 677 (677)
T ss_dssp EEEECTTCHHHHHHHHHHHTCCSSCSSSSTTHHHHHHHHHHHTTCCCSSTTHHHHHHHHTSSSSCC
T ss_pred eEEEcCCCHHHHHHHHhhhccccCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHhcC
Confidence 999999999999999877655 56678999999999999999999999999999999999987775
No 2
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=100.00 E-value=2.6e-160 Score=1394.13 Aligned_cols=630 Identities=55% Similarity=0.953 Sum_probs=539.2
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeC
Q 003458 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (818)
Q Consensus 77 ~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (818)
.+++.||+|+++||+||+++||+|+++|||||||||+||++|+||.+++++..+ ....++.|+|.+++++++|+|+||
T Consensus 22 ~e~~~Fqaei~~Ll~li~~sLYsn~eifLRELIsNA~DA~dk~r~~~l~~~~~~--~~a~~~~I~I~~d~~~~~I~I~Dn 99 (666)
T 2o1u_A 22 SEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLHVTDT 99 (666)
T ss_dssp ------------CCSSSTTTTSSSCTTHHHHHHHHHHHHHHHHHHHTTSCTTSS--SSCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceehHHhHHHHHHHHHHhccCCchHHHHHHHhhHHHHHHHHHHHhccCchhc--cCCCccEEEEEEeCCCCEEEEEEC
Confidence 378999999999999999999999999999999999999999999999999877 556678999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCchhHHHhhhhc-----CCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCc
Q 003458 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA 231 (818)
Q Consensus 157 GiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~-----~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~ 231 (818)
|+|||++||.++|++||+||++.|+++++.+ .+...||||||||||+||||++|+|+||++++.++.|+++| |.
T Consensus 100 GiGMt~edl~~~l~tIA~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~g-g~ 178 (666)
T 2o1u_A 100 GVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS-NE 178 (666)
T ss_dssp SCCCCHHHHHHHTTC-------------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESS-SC
T ss_pred CCCCCHHHHHHHHhhhcccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeC-Ce
Confidence 9999999999999999999999999888753 46789999999999999999999999999977899999999 89
Q ss_pred eEEEeCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhhhh
Q 003458 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (818)
Q Consensus 232 f~i~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (818)
|+|.+.+++...++||+|+|+|+++..+|++.++|+++|++||+||++||+++..++.+
T Consensus 179 ~ti~~~~~~~~~~~GT~I~L~Lk~d~~Efle~~~I~~ivkkys~fi~~PI~~~~~~~~~--------------------- 237 (666)
T 2o1u_A 179 FSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTGG--------------------- 237 (666)
T ss_dssp CEEEECTTCCSSSSEEEEEEEECTTTTTSSSTTHHHHHHHHHSTTCCSCEEEEECC------------------------
T ss_pred EEEEecccCCCCCCCeEEEEEEccchhhhccHHHHHHHHHHHHhhCCCceEEecccccc---------------------
Confidence 99988643345689999999999999999999999999999999999999997643100
Q ss_pred hhhcccCCCCccccccccCCCcccceecccceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeeccc
Q 003458 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (818)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg 391 (818)
. ++++++|+.+|+.+|||+|+|+++++|+|.+||++++++| .+||+|+||++||
T Consensus 238 ------------------~------~~~~~~~~~iN~~~~lw~~~~~~i~~eey~~fy~~~~~d~--~~pl~~ih~~~eg 291 (666)
T 2o1u_A 238 ------------------G------GKTVWDWELMNDIKPIWQRPSKEVEDDEYKAFYKSFSKES--DDPMAYIHFTAEG 291 (666)
T ss_dssp ----------------------------CCEEEECSCCSCTTTSCTTTCCHHHHHHHHHHTTCTT--SCCSEEEEEEECS
T ss_pred ------------------c------cccccceEEEecCccccccCcccccHHHHHHHHhhhcccc--ccCeeEEEecccC
Confidence 0 0123579999999999999999999999999999999999 8999999999999
Q ss_pred ceeeEEEEEecCCCCcchhhhhhcccccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHH
Q 003458 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (818)
Q Consensus 392 ~~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~ 471 (818)
+++|+|+||+|+.+|+|+|.+.|....++|+||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++
T Consensus 292 ~~~~~gll~iP~~~p~d~~~~~~~~~~~~i~LYVn~vfI~d~~~~llP~~l~FvkGvVDs~dLplNVSRE~LQ~~~~l~~ 371 (666)
T 2o1u_A 292 EVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKV 371 (666)
T ss_dssp SSCEEEEEEECSSCCC------------CEEEEETTEEEESCCCTTSCGGGTTCEEEEEESSSCSSSCHHHHHTCHHHHH
T ss_pred cEEEEEEEEcCCCCchhhhhhccccccCCeEEEEcCeEeeCchhhhhHHHHHHeeeeeCHhhCCCcccchhhccCHHHHH
Confidence 99999999999999999987532134789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCcchhhHHH-HHHHHHhHHhhhhcccCHHhHHHHhccccceec
Q 003458 472 IKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYT-KFWNEFGKSIKLGIIEDAANRNRLAKLLRFEST 550 (818)
Q Consensus 472 I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~-~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss 550 (818)
|++.|++|++++|.+||++ +|+ +||++||++||+||++|..||++|++||||+||
T Consensus 372 I~~~l~kkv~~~l~~l~~e------------------------~y~~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss 427 (666)
T 2o1u_A 372 IRKKLVRKTLDMIKKIADE------------------------KYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSS 427 (666)
T ss_dssp HHHHHHHHHHHHHHHSCHH------------------------HHHHTHHHHHHHHHHHHHHHCGGGHHHHHTTCCEEET
T ss_pred HHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHhhhhccCHHHHHHHHhheEeeec
Confidence 9999999999999999865 899 999999999999999999999999999999999
Q ss_pred CCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeecccc
Q 003458 551 KSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEG 630 (818)
Q Consensus 551 ~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~ 630 (818)
+++++++||++||+|||++|+.|||+||+|++++++|||+|.|++||||||||++||||||||+|.+|+||+|++|++++
T Consensus 428 ~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~l~~~iDe~~~~~l~e~~gk~~~~v~~~~ 507 (666)
T 2o1u_A 428 HHPSDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEG 507 (666)
T ss_dssp TSSSCEECHHHHHHHSCTTCCEEEEEECSSHHHHHTCGGGHHHHHTTCCCEEECSTHHHHHHHTCCCBTTBEEEETTBSC
T ss_pred CCCCceeeHHHHHHhcccccceEEEEeCCCHHHHhhCcHHHHHHhCCceEEEeCCchHHHHHHHHHhcCCCceEEecccc
Confidence 98778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCc--ch--HHHHHHHHHHHHHHHhh-cCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhcc--c-cch
Q 003458 631 LKLGKDT--KD--KELKESFKELTKWWKGA-LASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTL--S-DAS 702 (818)
Q Consensus 631 ~~l~~~e--k~--~~~~~~~~~L~~~lK~~-L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~--~-d~~ 702 (818)
++|++++ ++ ++.+++|++|++|||++ |+++ |.+|++|+||++||||||+++||||+||||||++|++ . +++
T Consensus 508 ~~l~~~~~~~~~~~~~~~~~~~l~~~~k~~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~s~~m~r~~~~~~~~~~~~~~ 586 (666)
T 2o1u_A 508 VKFDESEKTKESREAIEKEFEPLLNWMKDKALKDK-IEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDIS 586 (666)
T ss_dssp CCCCCCHHHHHHHHHHHHHSHHHHHHHHHTTTTTT-EEEEEECSSCSSCSEEEEBCTTSCCHHHHHHHHHHHHHTSCCCC
T ss_pred cccccchhhhhhhhhhHHhHHHHHHHHHhccCCCc-eeEEEEeecCCCCCeEEEecCcccCHHHHHHHHHhhhhcccCcc
Confidence 9997544 22 45678999999999999 9999 9999999999999999999999999999999999987 2 333
Q ss_pred hhhhcccccceeeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCCCc
Q 003458 703 KQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPDA 781 (818)
Q Consensus 703 ~~~~~~~kkiLEINp~HPlIk~L~~~~~~d~~d~~~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l~~~~~~ 781 (818)
+..++..+++|||||+||||++|+++...+++++.++++|.||||+|+|++|+.++||+.|++|+++||.++||++.++
T Consensus 587 ~~~~~~~k~~LeiNp~H~li~~l~~~~~~~~~~~~~~~~~~~l~d~All~~G~~~~dp~~f~~r~~~ll~~~l~~~~~~ 665 (666)
T 2o1u_A 587 TNYYASQKKTFEINPRHPLIKDMLRRVKEDEDDKTVSDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDA 665 (666)
T ss_dssp SCSSSSCCEEEEECTTSHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHTTSCC----
T ss_pred cccccccCeeeEECCCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCccC
Confidence 3456788999999999999999998877777788999999999999999999999999999999999999999997654
No 3
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=100.00 E-value=1.3e-152 Score=1325.43 Aligned_cols=608 Identities=40% Similarity=0.740 Sum_probs=525.2
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeC
Q 003458 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (818)
Q Consensus 77 ~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (818)
.++|.||+|+++||++|+++||+|+++|||||||||+||++|+|+.+++++.++ ....++.|+|.+++++++|+|+||
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~--~~a~~~~I~I~~d~~~~~I~I~Dn 81 (624)
T 2ioq_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISDN 81 (624)
T ss_dssp -----------CCHHHHHHHHSSCTTHHHHHHHHHHHHHHHHHHHHHHTSTTTT--TTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhhHHhhccCcccc--cCCCCcEEEEEEeCCCcEEEEEEC
Confidence 478999999999999999999999999999999999999999999999999876 555668899999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCchhHHHhhhhc--CCCCccccccccceeeeeeccEEEEEEeeCC---CeeEEEEEcCCCc
Q 003458 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGA 231 (818)
Q Consensus 157 GiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~--~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~---d~~~~W~s~~~~~ 231 (818)
|+|||++||.++|++||+||++.|+++++.. .+...||||||||||+||||++|+|+|++++ +.++.|++.+++.
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~~~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (624)
T 2ioq_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (624)
T ss_dssp SCCCCHHHHHHHHHHHCC---------------CCTTHHHHHHHHHHHHHHHEEEEEEEEECTTSCGGGEEEEEECSSSC
T ss_pred CCCCCHHHHHHHHHhhcccccHHHHHHhcccccccccccCCCCccHHHHHhcCCeEEEEECCCCCCCCeeEEEEEeCCCe
Confidence 9999999999999999999999998887642 4678999999999999999999999999986 4689999999999
Q ss_pred eEEEeCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhhhh
Q 003458 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (818)
Q Consensus 232 f~i~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (818)
|++.+.+ ...+||+|+|||+++..+|++.++|+++|++||.|+++||+++.. +. +
T Consensus 162 ~~i~~~~---~~~~GT~I~L~Lk~d~~Efl~~~~i~~ivkkys~fi~~PI~~~~~--e~----~---------------- 216 (624)
T 2ioq_A 162 YTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR--EE----K---------------- 216 (624)
T ss_dssp CEEEEEC---CSSSEEEEEEEECTTCGGGGCHHHHHHHHHHHHTTCSSCEEEEEE--EE----C----------------
T ss_pred EEEEECC---CCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec--cc----c----------------
Confidence 9998752 458999999999999999999999999999999999999999641 00 0
Q ss_pred hhhcccCCCCccccccccCCCcccceecccceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeeccc
Q 003458 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (818)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg 391 (818)
+ . + + +++|+.+|+.+|+|+|+|+++++++|.+||++++++| .+||+|+|+++||
T Consensus 217 -------~-----------~--~---~-~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~--~~~l~~ih~~~eg 270 (624)
T 2ioq_A 217 -------D-----------G--E---T-VISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEG 270 (624)
T ss_dssp -------S-----------S--C---E-EEEEEECCCCSCTTTSCTTTCCHHHHHHHHHHHHTCC--SCCSCCEEEEEES
T ss_pred -------c-----------c--c---c-ccceEEEeCCccceEecCccchHHHHHHHHHhhccch--hcCeEEEEecccc
Confidence 0 0 0 1 3579999999999999999999999999999999999 8999999999999
Q ss_pred ceeeEEEEEecCCCCcchhhhhhcccccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHH
Q 003458 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (818)
Q Consensus 392 ~~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~ 471 (818)
+++|+|+||+|..+|+++|.+ ...++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++
T Consensus 271 ~~~~~gll~~P~~~p~~~~~r---~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dl~lNVSRE~LQ~~~~l~~ 347 (624)
T 2ioq_A 271 KQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRN 347 (624)
T ss_dssp SSCEEEEEECCSSCCGGGSSS---SCCCCEEEEESSCEEEEEECSSSCTTSTTCEEEEEESSSCTTCCHHHHHHSSHHHH
T ss_pred eEEEEEEEEeCCcCccchhhh---cccCCeEEEECCEEeecchhccchhhhhhEEEEECHhhCCCccCchhhhhhHHHHH
Confidence 999999999999999999875 55789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecC
Q 003458 472 IKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTK 551 (818)
Q Consensus 472 I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~ 551 (818)
|++.|++|++++|.+||++ +|++|++||++||++||+|+++|..||++|++||||+||+
T Consensus 348 I~~~l~kkv~~~l~~l~~~---------------------d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~ 406 (624)
T 2ioq_A 348 LRNALTKRVLQMLEKLAKD---------------------DAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTH 406 (624)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------CHHHHHHHHHHHHHHHTTHHHHCCTTHHHHHHHCCBEETT
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHheEeeecC
Confidence 9999999999999999998 8899999999999999999999999999999999999998
Q ss_pred CCC--cccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccc
Q 003458 552 SDG--KLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKE 629 (818)
Q Consensus 552 ~~~--~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~ 629 (818)
+++ +++||++|++|||++|+.|||+||+|++++++|||+|.|++||||||||++|||||||++|.+|+|++|++|+++
T Consensus 407 ~~~~~~~~sL~eY~~rmke~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~ 486 (624)
T 2ioq_A 407 TDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKV 486 (624)
T ss_dssp SSCSCCCBCHHHHHTTCCTTCCSEEEEECSSHHHHHHCHHHHHHHHHTCCCEEECSSTHHHHTTTCCEETTEEEEETTSC
T ss_pred CCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEEecCchHHHHHHHHHhcCCceEEEeecc
Confidence 653 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC-c--ch--HHHHHHHHHHHHHHHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhh
Q 003458 630 GLKLGKD-T--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQ 704 (818)
Q Consensus 630 ~~~l~~~-e--k~--~~~~~~~~~L~~~lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~ 704 (818)
++++++. + ++ ++.+++|++|++|||++|+++ |.+|++|+||++||||||++++|||++|||||++|+ +
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~-v~~V~~s~rl~~sP~~lv~~~~~~~~~m~r~m~~~~------~ 559 (624)
T 2ioq_A 487 DESLEKLADEVDESAKEAEKALTPFIDRVKALLGER-VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG------Q 559 (624)
T ss_dssp STTTTTCC-------HHHHHHHHHHHHHHHHHSSSS-SSEEEECCCCSSCCEEEECCC----------------------
T ss_pred cccccccchhhhhhhhHhHHHHHHHHHHHHHhhcCC-ceEEEEeecCCCCcEEEEecCcCcCHHHHHHHHHhh------h
Confidence 9998642 2 22 456789999999999999999 999999999999999999999999999999999885 2
Q ss_pred hhcccccceeeCCCChHHHHHHHhhccCCCchhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 003458 705 AYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVK 772 (818)
Q Consensus 705 ~~~~~kkiLEINp~HPlIk~L~~~~~~d~~d~~~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~ 772 (818)
.++..+++|||||+||||++|.. ..+++.++++|++|||+|+|++|+.++||+.|++|+++||.
T Consensus 560 ~~~~~~~~LeiN~~hpli~~L~~----~~~~~~~~~~~~~L~d~All~~g~~l~dp~~f~~r~~~~l~ 623 (624)
T 2ioq_A 560 KVPEVKYIFELNPDHVLVKRAAD----TEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 623 (624)
T ss_dssp -----CCEEEECTTCHHHHTTTS----CCCHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred cccccCceEEECCCCHHHHHHHh----hcCHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHhh
Confidence 24567999999999999999965 23567899999999999999999999999999999999996
No 4
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=100.00 E-value=1.6e-138 Score=1194.63 Aligned_cols=543 Identities=42% Similarity=0.777 Sum_probs=439.9
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeC
Q 003458 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (818)
Q Consensus 77 ~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (818)
.+++.||+++++||++|+++||+||++|||||||||+||++|+|+.+++++.++ ....++.|+|.+++++++|+|+||
T Consensus 4 ~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLrELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~I~~d~~~~~I~I~Dn 81 (559)
T 1y4s_A 4 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISDN 81 (559)
T ss_dssp CEEEECCTTHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--CSCCCCCEEEEEETTTTEEEEEEC
T ss_pred ccceeeeecHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHhHHHhhccCchhc--cCCCccEEEEEEeCCCcEEEEEEC
Confidence 478999999999999999999999999999999999999999999999999877 556678999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCchhHHHhhhhc--CCCCccccccccceeeeeeccEEEEEEeeCC---CeeEEEEEcCCCc
Q 003458 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS--GDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGA 231 (818)
Q Consensus 157 GiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~--~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~---d~~~~W~s~~~~~ 231 (818)
|+|||+++|.++|++||+||++.|+++++.. .+...||||||||||+||||++|+|+|++++ +.++.|++.+++.
T Consensus 82 GiGMt~edl~~~l~tiA~Sg~~~f~e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~ 161 (559)
T 1y4s_A 82 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 161 (559)
T ss_dssp SSCCCHHHHHHHHSCCSCCCCCCTTCC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSE
T ss_pred CCCCCHHHHHHHHhhhcccccHHHHHHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCe
Confidence 9999999999999999999999998777632 4678999999999999999999999999986 5689999999999
Q ss_pred eEEEeCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhhhh
Q 003458 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEKEE 311 (818)
Q Consensus 232 f~i~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (818)
|++.+.+ ...+||+|+|||+++..+||+.++|+++|++||.||++||+++.. + . +
T Consensus 162 ~~i~~~~---~~~~GT~I~L~Lk~d~~Efle~~~I~~iv~kys~fi~~PI~~~~~--e---~-~---------------- 216 (559)
T 1y4s_A 162 YTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKR--E---E-K---------------- 216 (559)
T ss_dssp EEEEEEC---CCSCEEEEEEEECTTCGGGSCHHHHHHHHHHHHTTCSSCEEEEEE--E---C-S----------------
T ss_pred eEEeECC---CCCCCeEEEEEEcchhhhcchHHHHHHHHHHHhccCCCceEEeec--c---c-c----------------
Confidence 9998752 458999999999999999999999999999999999999999641 0 0 0
Q ss_pred hhhcccCCCCccccccccCCCcccceecccceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeeccc
Q 003458 312 ETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEG 391 (818)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg 391 (818)
+ .+ + +++|+.+|+.+|||+|+|+++++++|.+||++++++| .+||+|+|+++||
T Consensus 217 -------~-----------~~-----~-~~~~~~in~~~~lw~~~~~~i~~e~y~~fy~~~~~d~--~~~l~~ih~~~eg 270 (559)
T 1y4s_A 217 -------D-----------GE-----T-VISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEG 270 (559)
T ss_dssp -------T-----------TS-----C-EEEEEECCCCCCGGGSCGGGCCHHHHHHHHHHHHTCS--SCEEEEEEECCCS
T ss_pred -------c-----------cc-----c-ccceEEEeCCccceecCcccccHHHHHHHHHhhhhhh--hcCeEEEEeccCC
Confidence 0 00 0 3579999999999999999999999999999999999 8999999999999
Q ss_pred ceeeEEEEEecCCCCcchhhhhhcccccceEEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHH
Q 003458 392 DVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKT 471 (818)
Q Consensus 392 ~~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~ 471 (818)
+++|+|+||+|..+|+++|.+ ...++++||||||||+|+|++|||+||+||+|||||+|||||||||+||+|++|++
T Consensus 271 ~~~~~gll~~P~~~p~~~~~r---~~~~~i~lyvn~v~I~d~~~~llP~~l~fv~gvVDs~dlplNVSRE~lq~~~~l~~ 347 (559)
T 1y4s_A 271 KQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRN 347 (559)
T ss_dssp SSCEEEEEEEESSCCTTCSSS---SCCCCEEEEETTEEEEEEEGGGSCGGGTTCEEEEEESSSCTTCCTTGGGGCHHHHH
T ss_pred ceEEEEEEEcCCcCcchhhhh---cccCCeEEEEcCEEeecchhhhChHhHhheeEeeChhhCCCeeCchhhhhhHHHHH
Confidence 999999999999999999875 55789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecC
Q 003458 472 IKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTK 551 (818)
Q Consensus 472 I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~ 551 (818)
|++.|++|++++|.+||++ +|++|++||++||++||+|+++|..||++|++||||+||+
T Consensus 348 I~~~l~kkv~~~l~~l~~~---------------------d~e~y~~f~~~f~~~lK~G~~~D~~~~~~l~~ll~f~ss~ 406 (559)
T 1y4s_A 348 LRNALTKRVLQMLEKLAKD---------------------DAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTH 406 (559)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------------CHHHHHHHHHHHHHHHTTSTTTCGGGHHHHHTTCEEBCSS
T ss_pred HHHHHHHHHHHHHHHHHhc---------------------CHHHHHHHHHHHhHHhhhhhccCHHHHHHHHHhhEeeecC
Confidence 9999999999999999998 8899999999999999999999999999999999999999
Q ss_pred CCC--cccCHHHHHhhccCCCceEEEEeCCCHHHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccc
Q 003458 552 SDG--KLTSLDQYISRMKAGQKDIFYITGANKEQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKE 629 (818)
Q Consensus 552 ~~~--~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~ 629 (818)
+++ +++||++|++|||++|+.|||+||+|++++++|||+|.|++||||||||++|||||||++|.+|+|++|++|+++
T Consensus 407 ~~~~~~~~sL~eY~~rmk~~q~~IyY~t~~~~~~~~~sp~~e~~~~kg~eVl~~~~~iDe~~~~~l~~~~~k~~~~v~~~ 486 (559)
T 1y4s_A 407 TDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKV 486 (559)
T ss_dssp CSSSSCCEETTSSSTTCCTTCSCCBEECCSSSHHHHTCSSSHHHHHTTCCCEECCSTTHHHHHHHCCCCSSSCCBCC---
T ss_pred CCcCCCeeeHHHHHHhccccCceEEEEeCCCHHHHhhChHHHHHHhCCceEEEecChHHHHHHHHHHHhCCceEEecccc
Confidence 653 799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCC-c--ch--HHHHHHHHHHHHHHHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhc
Q 003458 630 GLKLGKD-T--KD--KELKESFKELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQT 697 (818)
Q Consensus 630 ~~~l~~~-e--k~--~~~~~~~~~L~~~lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa 697 (818)
++++++. + ++ ++.+++|++|++|||++|+++ |.+|++|+||++||||||++++|||+||||||++|+
T Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~L~~~-v~~V~~s~rl~~sp~~~v~~~~~~~~~m~~~~~~~~ 558 (559)
T 1y4s_A 487 DESLEKLADEVDESAKEAEKALTPFIDRVKALLGER-VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAG 558 (559)
T ss_dssp -------------------------------------------------------------------------
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHhcCC-ceEEEEeccCCCCCEEEEeCCCCcCHHHHHHHHhcC
Confidence 9998642 2 22 456789999999999999999 999999999999999999999999999999999874
No 5
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer, hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Probab=100.00 E-value=2.4e-124 Score=1042.38 Aligned_cols=411 Identities=50% Similarity=0.876 Sum_probs=357.9
Q ss_pred cCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceeeEEEEEecCCCCcchhhhhhcccccceEEEeecc
Q 003458 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (818)
Q Consensus 349 ~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (818)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|++ ...+++|+||||||
T Consensus 3 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~e~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvrrV 78 (448)
T 3q6m_A 3 TKPIWTRNPDDITNEEYGEFYKSLTNDW--EDHLAVKHFSVEGQLEFRALLFVPRRAPFDLFEN--RKKKNNIKLYVRRV 78 (448)
T ss_dssp -CCGGGSCTTSCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCC-----------CCEEEEETTE
T ss_pred CCCCCCCChhhCCHHHHHHHHHHhcCCc--cCChheeeeccCCCeeeEEEEEccCCCchhhhhh--hhhccceeEEeeee
Confidence 6899999999999999999999999999 9999999999999999999999999999999974 24578999999999
Q ss_pred ccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCC
Q 003458 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 508 (818)
Q Consensus 429 fI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~ 508 (818)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+|+ +
T Consensus 79 fI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~Irk~i~kKvl~~L~~la-~------------------ 139 (448)
T 3q6m_A 79 FIMDNCEELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNLVKKCLELFTELA-E------------------ 139 (448)
T ss_dssp EEESCCTTSSCGGGTTCEEEEEESCCC---------CCSHHHHHHHHHHHHHHHHHHHHT-S------------------
T ss_pred EEecchhhhchhhhhheeEEeccCCCCccccHHhhccCHHHHHHHHHHHHHHHHHHHHHH-h------------------
Confidence 999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcCh
Q 003458 509 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSP 588 (818)
Q Consensus 509 ~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP 588 (818)
++++|++||++||++||+|+++|..||++|++||||+||.++++++||++||+|||++|+.|||+||+|++++++||
T Consensus 140 ---d~e~Y~~f~~~fg~~lK~Gi~eD~~n~~~l~~LLrF~Ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp 216 (448)
T 3q6m_A 140 ---DKENYKKFYEQFSKNIKLGIHEDSQNRKKLSELLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSA 216 (448)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHTTCEEEETTTTTSCEEHHHHHHTCCSSCCEEEEEECSCHHHHHTSG
T ss_pred ---CHHHHHHHHHHHhHHHHhhhcccHHHHHHHHHhhEeeeccCCCceEeHHHHHHhccccCceEEEEecCCHHHHHhCh
Confidence 78899999999999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred hHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccccCCCCc--ch--HHHHHHHHHHHHHHHhhcCCCCccE
Q 003458 589 FLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALASENVDD 664 (818)
Q Consensus 589 ~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~--~~~~~~~~~L~~~lK~~L~~~~V~~ 664 (818)
|+|.|++||||||||++||||||||+|.+|+||+|+||++++++|++++ ++ ++.+++|++|++|||++||++ |++
T Consensus 217 ~lE~~k~kG~EVL~l~d~iDe~~i~~L~ef~gk~~~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L~~k-V~~ 295 (448)
T 3q6m_A 217 FVERLRKHGLEVIYMIEPIDEYCVQQLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKK-VEK 295 (448)
T ss_dssp GGHHHHHHTCCEEEECSTHHHHHTTTCCEETTEEEEETTBSCCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHTGGG-CSE
T ss_pred HHHHHHHCCCEEEEecCchHHHHHHHHHhhCCceEEEecccccCcccchhhhhhHHHHHHHHHHHHHHHHHHhcCc-ceE
Confidence 9999999999999999999999999999999999999999999997544 22 556779999999999999999 999
Q ss_pred EEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhhhcccccceeeCCCChHHHHHHHhhccCCCchhHHHHHHH
Q 003458 665 VKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAGVQQTAQL 744 (818)
Q Consensus 665 V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~~~~~kkiLEINp~HPlIk~L~~~~~~d~~d~~~~~~a~~ 744 (818)
|+||+||++||||||++++|||+||||||++|+++++.+.+++.+||||||||+||||++|+++...+++++.++++|.+
T Consensus 296 V~vS~RL~~sP~~lv~~e~g~s~~Merimkaq~~~d~~~~~~~~~kk~LEINp~Hpli~~L~~~~~~d~~~~~~~~~~~l 375 (448)
T 3q6m_A 296 VVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPDHSIIETLRQKAEADKNDKSVKDLVIL 375 (448)
T ss_dssp EEECSSCSSSSEEEEECSSSCCHHHHHHCCC--------------CEEEEECTTCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred EEecCCCCCCCeEEEeCCcchhHHHHHHHHHhhccccccccccccCceeEECCCCHHHHHHHHHhhcccchhHHHHHHHH
Confidence 99999999999999999999999999999999987765556788999999999999999999988888888999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCCCcccccC
Q 003458 745 IYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPDAAVEEE 786 (818)
Q Consensus 745 Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l~~~~~~~~~~~ 786 (818)
|||+|+|++|+.++||+.|++||++||.++||++.+++++++
T Consensus 376 Lyd~AlL~~G~~l~DP~~f~~ri~~ll~~~L~id~~~~~~~~ 417 (448)
T 3q6m_A 376 LYETALLSSGFSLEDPQTHANRIYRMIKLGLGIDEDDPTADD 417 (448)
T ss_dssp HHHHHHHHTTCCCSCHHHHHHHHHHHHHHTTC----------
T ss_pred HHHhHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCcccccccc
Confidence 999999999999999999999999999999999988766543
No 6
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics, stress response protein, chaperone, structural GE consortium, SGC; 2.50A {Leishmania major}
Probab=100.00 E-value=1.3e-123 Score=1040.35 Aligned_cols=413 Identities=48% Similarity=0.876 Sum_probs=368.7
Q ss_pred ceeeccccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceeeEEEEEecCCCCcchhhhhhcccccce
Q 003458 342 EWELLNDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANL 421 (818)
Q Consensus 342 ~~e~iN~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f~~llfiP~~~p~~~~~~~~~~~~~~i 421 (818)
+|++||+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|++ ...+++|
T Consensus 12 ~~e~iN~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~~~~~lLyiP~~ap~dl~~~--~~~~~~i 87 (444)
T 3hjc_A 12 ENLYFQGHKPLWTRDPKDVTKEEYAAFYKAISNDW--EDPAATKHFSVEGQLEFRSIMFVPKRAPFDMFEP--NKKRNNI 87 (444)
T ss_dssp -------CCCGGGSCGGGCCHHHHHHHHHHTSSCC--SCCSEEEEEEECSSSCEEEEEEECSSCCC----C--CCCCCSE
T ss_pred CceeccCCCCCCCCCcccCCHHHHHHHHHHhcCCc--cCCceeEEEEecccceeeEEEecCCCCCcchhhh--hhhcCCe
Confidence 68999999999999999999999999999999999 9999999999999999999999999999999873 2457899
Q ss_pred EEEeeccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcc
Q 003458 422 KLYVRRVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKK 501 (818)
Q Consensus 422 kLYvrrVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~ 501 (818)
+||||||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||+
T Consensus 88 kLYv~rVfI~D~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kKvl~~L~~la~------------ 155 (444)
T 3hjc_A 88 KLYVRRVFIMDNCEDLCPDWLGFVKGVVDSEDLPLNISRENLQQNKILKVIRKNIVKKCLEMFDEVAE------------ 155 (444)
T ss_dssp EEEETTEEEESCCGGGSCGGGTTCEEEEEESSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------
T ss_pred eEEEeeeEeecchhhhchHHHhhheEEeccCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999994
Q ss_pred cccccCCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCH
Q 003458 502 DVEKFSDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANK 581 (818)
Q Consensus 502 ~~~~~~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~ 581 (818)
++++|++||++||++||+||++|..||++|++||||+||+++++++||++|++|||++|+.|||+||+|+
T Consensus 156 ----------d~e~Y~kFw~~fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~ 225 (444)
T 3hjc_A 156 ----------NKEDYKQFYEQFGKNIKLGIHEDTANRKKLMELLRFYSTESGEEMTTLKDYVTRMKAGQKSIYYITGDSK 225 (444)
T ss_dssp ----------SHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHCCBCBTTTTTSCBCHHHHHHTCCTTCCEEEEEECSCH
T ss_pred ----------CHHHHHHHHHHHhHHHhccccccHHHHHHHHHheEeeeecCCCCcCcHHHHHHhccccCceEEEEeCCCH
Confidence 4779999999999999999999999999999999999999878899999999999999999999999999
Q ss_pred HHHhcChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccccCCCCc--ch--HHHHHHHHHHHHHHHhhc
Q 003458 582 EQLEKSPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGAL 657 (818)
Q Consensus 582 ~~~~~SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~--~~~~~~~~~L~~~lK~~L 657 (818)
+++++|||+|.|++||||||||++||||||||+|.+|+|++|+||+++++++++.+ ++ ++.+++|++|++|||++|
T Consensus 226 ~~~~~sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~eeek~~~ee~~~~~~~L~~~~K~~L 305 (444)
T 3hjc_A 226 KKLETSPFIEQARRRGLEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEESEEEKQQREEEKAACEKLCKTMKEVL 305 (444)
T ss_dssp HHHHTCGGGHHHHHHTCCEEEECSHHHHHHHHHCCEETTEEEEETTBSSCCCCCCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHhChHHHHHHhCCcEEEEeCCchHHHHHHHHHHhCCceEEEeccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999986433 22 566789999999999999
Q ss_pred CCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhhhcccccceeeCCCChHHHHHHHhhccCCCchh
Q 003458 658 ASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKDPEDAG 737 (818)
Q Consensus 658 ~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~~~~~kkiLEINp~HPlIk~L~~~~~~d~~d~~ 737 (818)
|++ |.+|+||+||++||||||++++|||++|||||++|++.++.+..++..+++|||||+||||++|+++...+++++.
T Consensus 306 ~~k-V~~V~vS~RL~~sP~~lv~~e~g~s~~Merimka~~~~~~~~~~~~~~k~~LEINp~Hpli~~L~~~~~~d~~~~~ 384 (444)
T 3hjc_A 306 GDK-VEKVIVSERLSTSPCILVTSEFGWSAHMEQIMRNQALRDSSMAQYMMSKKTMELNPRHPIIKELRRRVGADENDKA 384 (444)
T ss_dssp GGG-CSEEEECSSCSSSSEEEEBCSSSBCHHHHHHHHHC--------CTTBCCCEEEECTTSHHHHHHHHHHHTC-CCHH
T ss_pred cCc-ceEEEecCCCCCCCeEEEcCCccccHHHHHHHHHhcccccccccccccCeeEEECCCCHHHHHHHHHhhcCcchHH
Confidence 999 9999999999999999999999999999999999987765444578899999999999999999998888888899
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcCCCCCc
Q 003458 738 VQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVKSSLNISPDA 781 (818)
Q Consensus 738 ~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l~~~~~~ 781 (818)
++++|++|||+|+|++|+.++||+.|++|+++||.++||++.++
T Consensus 385 ~~~l~~lLyd~AlL~~G~~ledp~~f~~ri~~ll~~~l~~~~~~ 428 (444)
T 3hjc_A 385 VKDLVFLLFDTSLLTSGFQLEDPTGYAERINRMIKLGLSLDEEE 428 (444)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999999999999999999998763
No 7
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat shock protein, CO-chaperone, ATP-binding, heat shock; 3.0A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-118 Score=992.32 Aligned_cols=400 Identities=49% Similarity=0.861 Sum_probs=377.3
Q ss_pred cCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceeeEEEEEecCCCCcchhhhhhcccccceEEEeecc
Q 003458 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (818)
Q Consensus 349 ~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (818)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|++ ...+++|+||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvrrV 76 (405)
T 2cge_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVRRV 76 (405)
T ss_dssp CCCGGGSCGGGSCTTHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCSSCSSSS--CCCCCCCEEEETTE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHhcCCC--cCCeeEEEeccCCCcceeEEEEecCCCchhhhhh--hhccCCeEEEEeee
Confidence 4799999999999999999999999999 9999999999999999999999999999999975 24478999999999
Q ss_pred ccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCC
Q 003458 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 508 (818)
Q Consensus 429 fI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~ 508 (818)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||++
T Consensus 77 fI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~~~l~kkvl~~L~~la~~------------------ 138 (405)
T 2cge_A 77 FITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED------------------ 138 (405)
T ss_dssp EEESSCSSSSCGGGTTCEEEEEESSCCSSCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------
T ss_pred EecCchhhhChHHHHHHhhcccccccCcccChhhhcccHHHHHHHHHHHHHHHHHHHHHhhC------------------
Confidence 99999999999999999999999999999999999999999999999999999999999975
Q ss_pred CcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcCh
Q 003458 509 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSP 588 (818)
Q Consensus 509 ~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP 588 (818)
+++|++||++||.+||+||++|..||++|++||||+||+++++++||+||++|||++|+.|||+||+|++++++||
T Consensus 139 ----~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~lLrF~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~sp 214 (405)
T 2cge_A 139 ----SEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSP 214 (405)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCEECBSSCSSSCEEHHHHHHTCCTTCCSEEEEECSCHHHHHTCT
T ss_pred ----HHHHHHHHHHhhhhhcchhccCHHHHHHHHHhheeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhcCh
Confidence 5699999999999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred hHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccccCCCCc--ch--HHHHHHHHHHHHHHHhhcCCCCccE
Q 003458 589 FLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALASENVDD 664 (818)
Q Consensus 589 ~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~--~~~~~~~~~L~~~lK~~L~~~~V~~ 664 (818)
|+|.|++||||||||++|||||||++|.+|+|++|++|+++ ++|++++ ++ ++.+++|++|++|||++|+++ |.+
T Consensus 215 ~~E~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~~~sV~~~-l~l~~~e~~~~~~~~~~~~~~~L~~~~k~~L~~~-v~~ 292 (405)
T 2cge_A 215 FLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGDQ-VEK 292 (405)
T ss_dssp THHHHHHHTCCEEEECSHHHHHHHHHHCBSSSBEEESSBCC-CCSSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTS-CSE
T ss_pred HHHHHHhCCCEEEEecCchHHHHHHHHHHhCCceeEEcccc-ccccccchhhhhhhHhHHHHHHHHHHHHHHhcCc-ceE
Confidence 99999999999999999999999999999999999999999 8886433 22 456789999999999999999 999
Q ss_pred EEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhhhcccccceeeCCCChHHHHHHHhhccC-CCchhHHHHHH
Q 003458 665 VKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKD-PEDAGVQQTAQ 743 (818)
Q Consensus 665 V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~~~~~kkiLEINp~HPlIk~L~~~~~~d-~~d~~~~~~a~ 743 (818)
|++|+||++||||||++++|||++|||||++|++.++.+..++..+++|||||+||||++|+.+...+ ++++.++++|+
T Consensus 293 V~~s~rl~~sP~~lv~~~~~~s~~mer~~k~~~~~~~~~~~~~~~k~~LeiNp~Hpli~~L~~~~~~~~~~~~~~~~~~~ 372 (405)
T 2cge_A 293 VVVSYKLLDAPAAIRTGQFGWSANMERIMKAQALRDSSMSSYMSSKKTFEISPKSPIIKELKKRVDEGGAQDKTVKDLTK 372 (405)
T ss_dssp EEECSSCCSSSEEEEECSSSCCHHHHHHHHHHHTTSSSCCCCCCCCEEEEECTTSHHHHHHHHHHTTTGGGCHHHHHHHH
T ss_pred EEEEeccCCCCeEEEeccccccHHHHHHHHHhhccccccccccccCeeEEEcCCCHHHHHHHHhhhccccCHHHHHHHHH
Confidence 99999999999999999999999999999999876655445677899999999999999999877655 56788999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhcC
Q 003458 744 LIYQTALMESGFSLNDPKDFASRIYSTVKSSLN 776 (818)
Q Consensus 744 ~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~~~l~ 776 (818)
+|||+|+|++|+.++||+.|++|+++||.++||
T Consensus 373 ~Lyd~AlL~~G~~~~dp~~f~~r~~~ll~~~l~ 405 (405)
T 2cge_A 373 LLYETALLTSGFSLDEPTSFASRINRLISLGLN 405 (405)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCcccHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999998876
No 8
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=100.00 E-value=1.6e-91 Score=741.45 Aligned_cols=284 Identities=49% Similarity=0.878 Sum_probs=240.6
Q ss_pred cCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceeeEEEEEecCCCCcchhhhhhcccccceEEEeecc
Q 003458 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (818)
Q Consensus 349 ~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (818)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+++|+|+|++ ...+++|+||||||
T Consensus 1 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~~H~~veg~~~~~~lLyiP~~ap~dl~~~--~~~~~~ikLYvrrV 76 (288)
T 1hk7_A 1 TKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVRRV 76 (288)
T ss_dssp CCCGGGSCTTTCCTTHHHHHHHHHHSCC--SCCSEEEEEEECSSSCEEEEEEECSSCCCCCSSS--CCCCCCCEEEETTE
T ss_pred CCCcccCCchhCCHHHHHHHHHHhcCCc--ccCeeEEEEeccCCceeEEEEEecCCCcchhhhh--hhccCCeEEEEeee
Confidence 4799999999999999999999999999 9999999999999999999999999999999975 24478999999999
Q ss_pred ccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCC
Q 003458 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 508 (818)
Q Consensus 429 fI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~ 508 (818)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++|++.|++|++++|.+||+
T Consensus 77 fI~d~~~~llP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~------------------- 137 (288)
T 1hk7_A 77 FITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAE------------------- 137 (288)
T ss_dssp EEESSCSSSSCGGGTTCEEEEEESSCCCC-------CCHHHHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred EeecchhhhchHHHHHHhhcccccccCCcccHHHhccCHHHHHHHHHHHHHHHHHHHHHhh-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999984
Q ss_pred CcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhcCh
Q 003458 509 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEKSP 588 (818)
Q Consensus 509 ~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~SP 588 (818)
++++|++||++||++||+|+++|..||++|++||||+||+++++++||++||+||+++|+.|||+||+|++++++||
T Consensus 138 ---d~e~Y~kf~~~fg~~lK~Gi~eD~~nr~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~sp 214 (288)
T 1hk7_A 138 ---DSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSP 214 (288)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCCBEESSCSSSCBCHHHHHHHSCTTCCEEEEEECSSHHHHHTCG
T ss_pred ---CHHHHHHHHHHHhHHHhhhhcccHHHHHHHHHHhccccccCCCCcccHHHHHhhCcCCCceEEEEeCCCHHHHhcCH
Confidence 47799999999999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred hHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccccCCCCc--ch--HHHHHHHHHHHHHHHhhcCC
Q 003458 589 FLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDT--KD--KELKESFKELTKWWKGALAS 659 (818)
Q Consensus 589 ~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~e--k~--~~~~~~~~~L~~~lK~~L~~ 659 (818)
|+|+|++||||||||++||||||||+|.+|+|++|+||+++ ++|++++ ++ ++.+++|++|++|||++||+
T Consensus 215 ~lE~~k~kg~EVL~l~d~iDe~~i~~L~e~~gk~~~sv~k~-~~l~~~~eek~~~e~~~~~~~~L~~~~K~~L~~ 288 (288)
T 1hk7_A 215 FLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD-FELEETDEEKAEREKEIKEYEPLTKALKEILGD 288 (288)
T ss_dssp GGHHHHTTTCCCEEECSHHHHHHHHHHCEETTEEEEETTTC----------------------------------
T ss_pred HHHHHHHCCCEEEEecCchHHHHHhhhhhcCCceeeecccc-ccccchhhhhhhhHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999998 8886433 22 45677999999999999975
No 9
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=100.00 E-value=3.8e-91 Score=743.17 Aligned_cols=290 Identities=41% Similarity=0.786 Sum_probs=248.1
Q ss_pred cCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceeeEEEEEecCCCCcchhhhhhcccccceEEEeecc
Q 003458 349 VKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVRRV 428 (818)
Q Consensus 349 ~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvrrV 428 (818)
++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|++ ..+++|+||||||
T Consensus 2 ~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~vEg~~~~~~lLyiP~~ap~dl~~~---~~~~~ikLYvrrV 76 (303)
T 2gq0_A 2 AQALWTRNKSEITDEEYKEFYKHIAHDF--NDPLTWSHNRVEGKQEYTSLLYIPSQAPWDMWNR---DHKHGLKLYVQRV 76 (303)
T ss_dssp CCCGGGSCGGGSCHHHHHHHHHHHHTCC--SCCSEEEEEEECSSSCEEEEEEECSSCCTTTTST---TCCCSEEEEETTE
T ss_pred CCCCcCCCcccCCHHHHHHHHHHHcCCc--cCcceeEEeccccccceeEEEEecCCCCchhhhh---hccCCeEEEEece
Confidence 4799999999999999999999999999 9999999999999999999999999999999875 3578999999999
Q ss_pred ccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCcccccccCC
Q 003458 429 FISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKFSD 508 (818)
Q Consensus 429 fI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~~~ 508 (818)
||+|+|++|||+||+||||||||+|||||||||+||+|++|++|++.|++|++++|.+||++
T Consensus 77 fI~D~~eeLlP~yL~FvkGVVDS~DLPLNvSRE~LQ~~~~lk~Irk~l~kKvl~~L~~la~~------------------ 138 (303)
T 2gq0_A 77 FIMDDAEQFMPNYLRFVRGLIDSSDLPLNVSREILQDSTVTRNLRNALTKRVLQMLEKLAKD------------------ 138 (303)
T ss_dssp EEEEEEGGGSCGGGTTCEEEEEESSSCTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred EeecchhhhchHHHHHhhcccccccCCcccchHhhcccHHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCC--CcccCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 003458 509 DDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSD--GKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 586 (818)
Q Consensus 509 ~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~--~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~ 586 (818)
+|++|++||++||++||+||++|..||++|++||||+||+++ ++++||++|++|||++|+.|||+||+|++++++
T Consensus 139 ---d~e~Y~kF~~~fg~~lK~Gi~eD~~nr~~l~~LLrF~Ss~~~~~~~~~SL~eYv~rmke~Qk~IYYitg~s~~~~~~ 215 (303)
T 2gq0_A 139 ---DAEKYQTFWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKS 215 (303)
T ss_dssp ---CHHHHHHHHHHHHHHHTTHHHHCGGGHHHHHTTCCBEETTTTCCCCCBCHHHHHHTCCTTCCSEEEEECSSHHHHHT
T ss_pred ---CHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHhheeeecCCCccCCeeeHHHHHHhcccCCceEEEEeCCCHHHHhc
Confidence 899999999999999999999999999999999999999975 579999999999999999999999999999999
Q ss_pred ChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccccCCCCcchHHHHHHHHHHHHHHHhhcCCCCcc--E
Q 003458 587 SPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDTKDKELKESFKELTKWWKGALASENVD--D 664 (818)
Q Consensus 587 SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~~ek~~~~~~~~~~L~~~lK~~L~~~~V~--~ 664 (818)
|||+|.|++||||||||++||||||||+|.+|+|++|++|++++++|++.+ ++.||++ |. +
T Consensus 216 sp~lE~~k~kG~EVL~l~d~iDe~~i~~L~e~~gk~f~sV~k~~l~l~~~~----------------~~~l~~~-~~~~~ 278 (303)
T 2gq0_A 216 SPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLA----------------DGDLGTL-VPRGS 278 (303)
T ss_dssp CGGGHHHHHHTCCEEEECSTTHHHHTTTCCEETTEEEEETTC--------------------------------------
T ss_pred ChHHHHHHHCCCeEEEeCchhHHHHHHHHHhcCCcceEEeeccccCccccc----------------hhhhccc-cccCC
Confidence 999999999999999999999999999999999999999999999985222 3566777 88 8
Q ss_pred EEEeeccCCCCeEEEec
Q 003458 665 VKVSNRLDNTPCVVVTS 681 (818)
Q Consensus 665 V~vS~RL~~sP~~lv~~ 681 (818)
|.+|+||++||||+++.
T Consensus 279 ~~~~~~~~s~~~~~~~~ 295 (303)
T 2gq0_A 279 MAISDPNSSSVDKLAAA 295 (303)
T ss_dssp -----------------
T ss_pred ccccCcCCcchHHHHHH
Confidence 99999999999999874
No 10
>3pry_A Heat shock protein HSP 90-beta; structural genomics, structural genomics consortium, SGC, HE protein, chaperone; 2.28A {Homo sapiens} SCOP: d.14.1.8
Probab=100.00 E-value=1.4e-88 Score=713.53 Aligned_cols=263 Identities=51% Similarity=0.954 Sum_probs=249.2
Q ss_pred cccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceeeEEEEEecCCCCcchhhhhhcccccceEEEee
Q 003458 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (818)
Q Consensus 347 N~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvr 426 (818)
|.++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+++|++ ...+++|+||||
T Consensus 1 ~~~~plW~r~~~eit~EeY~eFYk~l~~d~--~dPL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYv~ 76 (268)
T 3pry_A 1 MKTKPIWTRNPDDITQEEYGEFYKSLTNDW--EDHLAVKHFSVEGQLEFRALLFIPRRAPFDLFEN--KKKKNNIKLYVR 76 (268)
T ss_dssp -CCSCGGGSCGGGCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCC----------CCCEEEEET
T ss_pred CCCCCCCCCChhhCCHHHHHHHHHHhcCCc--cCchheeeecccCCeeEEEEEEccCCCchhhhhh--hhhcCCeeEEEE
Confidence 457899999999999999999999999999 9999999999999999999999999999999974 245789999999
Q ss_pred ccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCccccccc
Q 003458 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 506 (818)
Q Consensus 427 rVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~ 506 (818)
||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|++|| +
T Consensus 77 rVfI~d~~~ellP~yL~FvkGVVDS~DLPLNVSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la-~---------------- 139 (268)
T 3pry_A 77 RVFIMDSCDELIPEYLNFIRGVVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA-E---------------- 139 (268)
T ss_dssp TEEEESCCGGGSCGGGTTCEEEEEESSSCSSCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-T----------------
T ss_pred EEEeecchhhhccchhhheEEEecCCCCCccccHHHhccCHHHHHHHHHHHHHHHHHHHHHH-h----------------
Confidence 99999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 003458 507 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 586 (818)
Q Consensus 507 ~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~ 586 (818)
++++|++||++||++||+|+++|..||++|++||||+||+++++++||++|++|||++|+.|||+||+|++++++
T Consensus 140 -----d~e~Y~~f~~~fg~~lK~G~~eD~~~~~~l~~LLrf~ss~~~~~~~SL~eYv~rmke~Q~~IyYitg~s~~~~~~ 214 (268)
T 3pry_A 140 -----DKENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYVSRMKETQKSIYYITGESKEQVAN 214 (268)
T ss_dssp -----SHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHTCEEEETTTTTSCEEHHHHHHTSCTTCCEEEEECSCCHHHHHT
T ss_pred -----CHHHHHHHHHHHHHHHHhHhhCCHHHHHHHHHHheeeeccCCCccEeHHHHHHhcccCCceEEEEeCCCHHHHHh
Confidence 788999999999999999999999999999999999999987789999999999999999999999999999999
Q ss_pred ChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccccccCCC
Q 003458 587 SPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGK 635 (818)
Q Consensus 587 SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~~~~l~~ 635 (818)
|||+|+|++||||||||++||||||||+|.+|+||+|+||++++++|++
T Consensus 215 sp~~E~~k~kg~EVL~l~d~iDe~~i~~L~ef~gk~l~sv~k~~l~l~e 263 (268)
T 3pry_A 215 SAFVERVRKRGFEVVYMTEPIDEYCVQQLKEFDGKSLVSVTKEGLELAE 263 (268)
T ss_dssp CHHHHHHHTTTCCEEECCSTTHHHHHHHHCEETTEEEEETTCSSCCCCC
T ss_pred ChHHHHHHHcCceEEEeCCchHHHHHHHHHhcCCceeeecccccCCCcc
Confidence 9999999999999999999999999999999999999999999999874
No 11
>1usu_A Heat shock protein HSP82; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.14.1.8 PDB: 1usv_A
Probab=100.00 E-value=7.8e-88 Score=705.77 Aligned_cols=257 Identities=51% Similarity=0.938 Sum_probs=241.1
Q ss_pred cccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceeeEEEEEecCCCCcchhhhhhcccccceEEEee
Q 003458 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (818)
Q Consensus 347 N~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvr 426 (818)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|++ ...+++|+||||
T Consensus 1 N~~~plW~r~~~eit~EeY~eFYk~l~~d~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~--~~~~~~ikLYvr 76 (260)
T 1usu_A 1 GPTKPLWTRNPSDITQEEYNAFYKSISNDW--EDPLYVKHFSVEGQLEFRAILFIPKRAPFDLFES--KKKKNNIKLYVR 76 (260)
T ss_dssp -CCCCGGGSCGGGCCHHHHHHHHHHHHCCS--SCCSEEEEEEECSSSCEEEEEEECSSCCTTTTCC------CCEEEEET
T ss_pred CCcCCcccCCcccCCHHHHHHHHHHhcCCc--cCCeeEEEeeccCcceeEEEEEecCCCchhhhhh--hhccCCeEEEEe
Confidence 789999999999999999999999999999 9999999999999999999999999999999975 244789999999
Q ss_pred ccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCccccccc
Q 003458 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 506 (818)
Q Consensus 427 rVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~ 506 (818)
||||+|+|++|||+||+||||||||+|||||||||+||+|++|++||+.|++|++++|.+||++
T Consensus 77 rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~lk~I~~~l~kkvl~~l~~la~d---------------- 140 (260)
T 1usu_A 77 RVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNIVKKLIEAFNEIAED---------------- 140 (260)
T ss_dssp TEEEESCCTTSSCGGGTTCEEEEEESSCCSCC------CCHHHHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred eeEeccchhhhchHHHHHheeccccCCcCCccCHHHhcccHHHHHHHHHHHHHHHHHHHHHHhC----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 003458 507 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 586 (818)
Q Consensus 507 ~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~ 586 (818)
+++|++||++||++||+||++|..||++|++||||+||+++++++||++|++|||++|+.|||+||+|++++++
T Consensus 141 ------~e~y~~f~~~fg~~lK~G~~eD~~n~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~s~~~~~~ 214 (260)
T 1usu_A 141 ------SEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKSVEK 214 (260)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHCTTTHHHHHTTCEEEETTEEEEEEEHHHHHHTSCTTCCEEEEEECSSHHHHHT
T ss_pred ------HHHHHHHHHHHhhhhcchhccCHHHHHHHHHhhEeeecCCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhc
Confidence 56999999999999999999999999999999999999876789999999999999999999999999999999
Q ss_pred ChhHHHHHhcCCeEEecCCCchHHHHHhhhhcCCCceEeeccc
Q 003458 587 SPFLERLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKE 629 (818)
Q Consensus 587 SP~lE~~~~kG~EVL~ltdpiDE~~i~~L~ef~gkkf~~V~k~ 629 (818)
|||+|.|++||||||||+|||||||||+|.+|+||+|+||+++
T Consensus 215 sp~lE~~k~kg~EVL~l~d~iDe~~i~~L~e~~gk~~~sv~k~ 257 (260)
T 1usu_A 215 SPFLDALKAKNFEVLFLTDPIDEYAFTQLKEFEGKTLVDITKD 257 (260)
T ss_dssp CTTHHHHHHTTCCEEEECSHHHHHHHHHHCEETTEEEEETTCC
T ss_pred ChHHHHHHhCCCeEEEeCCchHHHHHHHHHhhCCceEEecccc
Confidence 9999999999999999999999999999999999999999998
No 12
>1y6z_A Heat shock protein, putative; chaperone, structural genomics, structural genom consortium, SGC, unknown function; 1.88A {Plasmodium falciparum}
Probab=100.00 E-value=2.3e-86 Score=698.08 Aligned_cols=261 Identities=40% Similarity=0.786 Sum_probs=235.0
Q ss_pred cccCcccccCCCCCCHHHHHHHHHhhhcCCCCCCCceeeeeecccceeeEEEEEecCCCCcchhhhhhcccccceEEEee
Q 003458 347 NDVKAIWLRNPKEVTEEEYAKFYHSLVKDFSDEKPLAWSHFNAEGDVEFKAVLFVPPKAPHDLYESYYNTNKANLKLYVR 426 (818)
Q Consensus 347 N~~~piW~r~~~ev~~eey~~Fyk~~~~~~~~~~PL~~~hf~~eg~~~f~~llfiP~~~p~~~~~~~~~~~~~~ikLYvr 426 (818)
|+++|||+|+|++||+|||.+|||+++++| ++||+|+||++||+++|+||||||+.+|+|+|.+++...+++|+||||
T Consensus 1 N~~~plW~r~~~eit~eeY~eFYk~l~~~~--~~PL~~iH~~veg~~~~~~lLyiP~~ap~d~~~~~~~~~~~~ikLYvr 78 (263)
T 1y6z_A 1 GHQLPIWKQDEKSLTENDYYSFYKNTFKAY--DDPLAYVHFNVEGQISFNSILYIPGSLPWELSKNMFDEESRGIRLYVK 78 (263)
T ss_dssp ----CGGGSCTTSCCHHHHHHHHHHHHTCC--SCCSEEEEEEEESSSEEEEEEEECSSCCHHHHHCCC----CCEEEEET
T ss_pred CCcCCCcCCCcccCCHHHHHHHHHHhcCCc--cCcceeEEeccCCccceEEEEEecCCCchhhhhhhhHhhhcCeeEEEe
Confidence 788999999999999999999999999999 999999999999999999999999999999987655556799999999
Q ss_pred ccccccchhhhhHhhhhcccceecCCCCCCccchhhhccchHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCccccccc
Q 003458 427 RVFISDEFDELLPKYLNFLKGLVDSDTLPLNVSREMLQQHSSLKTIKKKLIRKALDMIRKIAEEDPDESTGKDKKDVEKF 506 (818)
Q Consensus 427 rVfI~d~~~~llP~yl~Fv~GVVDS~dLpLNvSRE~lQ~~~~l~~I~k~l~~k~l~~l~~la~~~~~~~~~~~~~~~~~~ 506 (818)
||||+|+|++|||+||+||||||||+|||||||||+||+|++|++|++.|++|++++|++||++
T Consensus 79 rVfI~d~~~~llP~yL~FvkGVVDS~DLpLNvSRE~LQ~~~~l~~Irk~l~kkvl~~l~~la~~---------------- 142 (263)
T 1y6z_A 79 RVFINDKFSESIPRWLTFLRGIVDSENLPLNVGREILQKSKMLSIINKRIVLKSISMMKGLKET---------------- 142 (263)
T ss_dssp TEEEESCGGGGSCGGGTTCEEEEEECC------------CTTHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred eeEeecchhhhchHHHHHHeeccccccCCCccchhhhcccHHHHHHHHHHHHHHHHHHHHHHhh----------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcchhhHHHHHHHHHhHHhhhhcccCHHhHHHHhccccceecCCCCcccCHHHHHhhccCCCceEEEEeCCCHHHHhc
Q 003458 507 SDDDDKKGQYTKFWNEFGKSIKLGIIEDAANRNRLAKLLRFESTKSDGKLTSLDQYISRMKAGQKDIFYITGANKEQLEK 586 (818)
Q Consensus 507 ~~~~~~~~~y~~f~~~f~~~iK~G~~eD~~nr~~lakLLrF~ss~~~~~~~SL~eYv~rmke~Qk~IYY~tg~s~~~~~~ 586 (818)
+|++|.+||++||.+||+||++|..||++|++||||+||+++++++||++|++|||++|+.|||+||++++++++
T Consensus 143 -----d~e~y~kf~~~fg~~lK~G~~eD~~~~~~l~~lLrf~ss~~~~~~~sL~eYv~rmke~Q~~IyY~t~~~~~~~~~ 217 (263)
T 1y6z_A 143 -----GGDKWTKFLNTFGKYLKIGVVEDKENQEEIASLVEFYSINSGDKKTDLDSYIENMKEDQKCIYYISGENKKTAQN 217 (263)
T ss_dssp -----CSHHHHHHHHHHHHHHHHHHHHCGGGHHHHHTTCEECBTTTTTSCEEHHHHHHTCCTTCCSEEEEECSSHHHHHT
T ss_pred -----hHHHHHHHHHHHhHHHccccccCHHHHHHHHHhheeeeccCCCceeeHHHHHHhccCCCceEEEEeCCCHHHHhc
Confidence 888999999999999999999999999999999999999976689999999999999999999999999999999
Q ss_pred ChhHHHHHhcCCeEEecCCCchHHHHHhh--hhcCCCceEeecccc
Q 003458 587 SPFLERLKKKNYEVIFFTDPVDEYLMQYL--MDYEDKKFQNVSKEG 630 (818)
Q Consensus 587 SP~lE~~~~kG~EVL~ltdpiDE~~i~~L--~ef~gkkf~~V~k~~ 630 (818)
|||+|.|++||||||+|++||||+||++| ++|+||+|+||++++
T Consensus 218 sp~~E~~~~kg~EVL~l~~~iDe~~i~~L~~~e~~gk~~~sv~k~~ 263 (263)
T 1y6z_A 218 SPSLEKLKALNYDVLFSLEPIDEFCLSSLTVNKYKGYEVLDVNKAD 263 (263)
T ss_dssp CGGGHHHHHHTCCCEEECSHHHHHHHHHHHHHCBTTBCEEETTCC-
T ss_pred CcHHHHHHhCCCeEEEeCCcHHHHHHHHhhhhccCCceEEecCCCC
Confidence 99999999999999999999999999999 599999999999974
No 13
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=100.00 E-value=2e-63 Score=527.34 Aligned_cols=264 Identities=53% Similarity=0.849 Sum_probs=227.8
Q ss_pred hhccccccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcE
Q 003458 71 RSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKI 150 (818)
Q Consensus 71 ~~~~~~~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~ 150 (818)
.+|+...+++.||||+++||+||+++||+|+++|||||||||+|||+|+||+++++|.++ ...+++.|+|.+|+++++
T Consensus 17 ~~~~~~~e~~~Fqaei~~Ll~ll~~~lYsn~~ifLRELIsNA~DA~~k~r~~~l~d~~~~--~~~~~l~I~I~~d~~~~t 94 (281)
T 3peh_A 17 QGPTESMESHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL--GEEKKLEIRISANKEKNI 94 (281)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTTCGGGG--TTCCCCCEEEEEETTTTE
T ss_pred HHHhhccceeeehHHHHHHHHHHHHhccCChHHHHHHHHhChHHHHHHHHHHhcCCchhc--cCCCceEEEEEEcCCCcE
Confidence 456677899999999999999999999999999999999999999999999999999987 677789999999999999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHhccCchhHHHhhhh-cCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCC
Q 003458 151 LSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQT-SGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD 229 (818)
Q Consensus 151 L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~-~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~ 229 (818)
|+|.|||+|||+++|.++|++||+||++.|+++++. +.+..+||||||||||+||||++|+|+|+++++.+|.|+|+++
T Consensus 95 LtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~l~~~~~d~~~IGqFGVGFySaf~vadkV~V~Sk~~~~~~~~Wes~g~ 174 (281)
T 3peh_A 95 LSITDTGIGMTKVDLINNLGTIAKSGTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNDDEQYIWESTAD 174 (281)
T ss_dssp EEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHHHHHTTCCSTTTTTTTCGGGGGGGTEEEEEEEEECTTSCCEEEEEETT
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHhhhccccccccccccCccchhhccccCEEEEEEecCCCCEEEEEECCC
Confidence 999999999999999999999999999999999975 4678899999999999999999999999999888999999999
Q ss_pred CceEEEeCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhh
Q 003458 230 GAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEK 309 (818)
Q Consensus 230 ~~f~i~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (818)
+.|+|.++++++...+||+|+|||++++.+||++++|++||++||+||+|||+|+..++.++++++++++ +
T Consensus 175 g~fti~~~~~~~~~~~GT~I~L~Lked~~e~le~~~ik~ivkkys~fi~~pI~l~~~k~~~~ev~~~~~~----~----- 245 (281)
T 3peh_A 175 AKFTIYKDPRGATLKRGTRISLHLKEDATNLLNDKKLMDLISKYSQFIQFPIYLLHENVYTEEVLADIAK----D----- 245 (281)
T ss_dssp SCEEEEECTTCSTTSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCCSCEEEEEEEEEEEEEEHHHHH----H-----
T ss_pred ccEEEEEcCCCCCCCCCeEEEEEECCchhhhcCHHHHHHHHHHhhccCCcceEEeeeeeeeeccCcchhh----h-----
Confidence 9999999765567899999999999999999999999999999999999999999999888877643210 0
Q ss_pred hhhhhcccCCCCccccccccCCCcccceecccceeecc
Q 003458 310 EEETEKSESESEDEDEDSEKKPKTKTVKETTFEWELLN 347 (818)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~e~iN 347 (818)
++.++++.++ +++++ +++++|+||+++++|+|+.+|
T Consensus 246 ~~~~~~~~~~-e~~~~-~~~~~k~k~~~~~~~~~e~~n 281 (281)
T 3peh_A 246 MVNDPNYDSV-KVEET-DDPNKKTRTVEKKVKKWTLMN 281 (281)
T ss_dssp HTTCTTSSEE-EECCC-CCTTCCEEEEEEEEEEEEECC
T ss_pred cccccccccc-ccccc-cccccCCcceEEEEEEeEecC
Confidence 0000111111 11222 245667899999999999998
No 14
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=100.00 E-value=1.2e-58 Score=490.90 Aligned_cols=261 Identities=57% Similarity=0.953 Sum_probs=205.7
Q ss_pred ccccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEE
Q 003458 75 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIR 154 (818)
Q Consensus 75 ~~~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~ 154 (818)
...++|.||+++++||+||+++||+|+++|||||||||+||++|+||++++++.++ ...+.+.|+|.++.+..+|+|.
T Consensus 3 ~~~e~~~Fqaei~~Ll~li~~~lYsn~eifLrELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~i~~d~~~~~l~I~ 80 (269)
T 1qy5_A 3 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLHVT 80 (269)
T ss_dssp -CEEEECCCHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTT--TTCCCCCEEEEEETTTTEEEEE
T ss_pred CcccceeehhhHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhhhhccCchhc--cCCCceEEEEEEcCCceEEEEE
Confidence 34689999999999999999999999999999999999999999999999999877 5667789999999989999999
Q ss_pred eCCCCCCHHHHHHHHHHHhccCchhHHHhhhhc-----CCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCC
Q 003458 155 DRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD 229 (818)
Q Consensus 155 DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~-----~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~ 229 (818)
|||+|||+++|.++|++||+||++.|+++++.+ .+..+||||||||||+||||++|+|+|+++++.++.|++++
T Consensus 81 DnGiGMt~edl~~~l~tia~Sgtk~F~~kl~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~g- 159 (269)
T 1qy5_A 81 DTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS- 159 (269)
T ss_dssp ECSCCCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECS-
T ss_pred ECCCCCCHHHHHHHhhhhcccccHHHHHhhhhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeC-
Confidence 999999999999999999999999999888754 56789999999999999999999999999987899999999
Q ss_pred CceEEEeCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCCCCCCCCchhHHHhhh
Q 003458 230 GAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVPTDEDDSSDEEEKAEK 309 (818)
Q Consensus 230 ~~f~i~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (818)
|.|+|.+.+++....+||+|+|||+++..+|++.++|+++|++||+||+|||+++..++.+++++++++++++.+ ++
T Consensus 160 g~~~i~~~~~~~~~~~GT~I~L~Lk~d~~e~le~~~i~~lvkkys~fi~~PI~l~~~k~~~~~~~~~~~~~~~~~---~~ 236 (269)
T 1qy5_A 160 NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEE---KE 236 (269)
T ss_dssp SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGSHHHHHHHHHTTCTTCSSCEEEEEECC---------------------
T ss_pred CEEEEEeccCCCcCCCCeEEEEEEcccchhhhhHHHHHHHHHhhhcccceeeEEeeeeeeeeccCccchhhhhhc---cc
Confidence 899998864334568999999999999999999999999999999999999999999988877766543211100 00
Q ss_pred hhhhhcccCCCCccc-cccccCCCcccceecccceeecc
Q 003458 310 EEETEKSESESEDED-EDSEKKPKTKTVKETTFEWELLN 347 (818)
Q Consensus 310 ~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~~~~~~e~iN 347 (818)
++ .+. ++++ +++++++|+|++++++|+|+.+|
T Consensus 237 ~~--~~~----~~~~~~~~~~~~k~k~~~~~~~~~e~~n 269 (269)
T 1qy5_A 237 DS--DDE----AAVEEEEEEKKPKTKKVEKTVWDWELMN 269 (269)
T ss_dssp -----------------------------CCCEEEEECC
T ss_pred cc--ccc----cccccccccccccCCceEEEEeeeEecC
Confidence 00 001 1111 12233578899999999999998
No 15
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=100.00 E-value=6.8e-58 Score=476.62 Aligned_cols=208 Identities=57% Similarity=0.948 Sum_probs=189.7
Q ss_pred cccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccC------------------------
Q 003458 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLG------------------------ 131 (818)
Q Consensus 76 ~~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g------------------------ 131 (818)
..++|.||||+++||+||+|+||||++||||||||||+|||+|+| ++|+++.++|
T Consensus 23 ~~e~~~Fqae~~~ll~li~~slYs~keiFlRELISNasDA~dK~r-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (272)
T 3ied_A 23 PVEKYNFKAEVNKVMDIIVNSLYTDKDVFLRELISNASDACDKKR-IILENNKLIKDAEVVTNEEIKNETEKEKTENVNE 101 (272)
T ss_dssp ECEEEECCHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCC--------------------
T ss_pred ccceechHHHHHHHHHHHHhhcCCCHHHHHHHHHHhhHHHHHHHH-HhccChhhhhcccccccccccccccccccccccc
Confidence 358999999999999999999999999999999999999999999 8888765431
Q ss_pred ---------C--CCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHhhhhc-CCCCcccccccc
Q 003458 132 ---------E--GDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-GDLNLIGQFGVG 199 (818)
Q Consensus 132 ---------~--~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~-~~~~~IGqFGIG 199 (818)
+ ....++.|+|.+|+++++|+|.|||+|||+++|.++|++||+||++.|+++++.+ .+..+|||||||
T Consensus 102 ~~~~~~~~~e~~~~~~~l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVG 181 (272)
T 3ied_A 102 STDKKENVEEEKNDIKKLIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVG 181 (272)
T ss_dssp ------------CGGGGCCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCG
T ss_pred ccccccccccccCCCCCcEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccce
Confidence 0 2345689999999999999999999999999999999999999999999998865 578899999999
Q ss_pred ceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCC-----CCCCCCCCcEEEEEecccccccccHHHHHHHHHHhc
Q 003458 200 FYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDT-----WNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYS 274 (818)
Q Consensus 200 F~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~-----~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys 274 (818)
|||+||||++|+|+|| +++.+|.|+|++++.|+|.+++ +++..++||+|+||||+++.+||++++|++||++||
T Consensus 182 FySaFmVAdkV~V~Sk-~dd~~~~WeS~g~gsfti~~~~~~~~~~g~~~~~GT~I~L~Lked~~e~le~~~ik~likkys 260 (272)
T 3ied_A 182 FYSSFLVSNRVEVYTK-KEDQIYRWSSDLKGSFSVNEIKKYDQEYDDIKGSGTKIILHLKEECDEYLEDYKLKELIKKYS 260 (272)
T ss_dssp GGGGGGTEEEEEEEEE-SSSCEEEEEECSSSEEEEEECTTCTTCC--CCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHC
T ss_pred eheeeccCCEEEEEEc-CCCceEEEEECCCCCEEEEECcccccccCCCCCCCcEEEEEECCChHHhcCHHHHHHHHHHHH
Confidence 9999999999999999 6778999999999999999875 345679999999999999999999999999999999
Q ss_pred CCCCcceEEee
Q 003458 275 EFINFPIYIWA 285 (818)
Q Consensus 275 ~fi~~PI~l~~ 285 (818)
+||+|||++|.
T Consensus 261 ~fi~~PI~l~~ 271 (272)
T 3ied_A 261 EFIKFPIEIWS 271 (272)
T ss_dssp TTCCSCEEECC
T ss_pred hCCCCCeEEEe
Confidence 99999999985
No 16
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=100.00 E-value=1.1e-56 Score=467.04 Aligned_cols=211 Identities=59% Similarity=0.967 Sum_probs=197.8
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeC
Q 003458 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (818)
Q Consensus 77 ~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (818)
.+++.||+|+++||+||+++||+|+++|||||||||+||++|+||.+++++..+ ...+++.|+|.+|+++++|+|.||
T Consensus 16 ~e~~~Fqae~~~ll~ll~~~lYs~~~ifLRELIsNA~DA~~k~r~~~l~~~~~~--~~~~~~~I~I~~d~~~~~L~I~Dn 93 (239)
T 3nmq_A 16 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNASDALDKIRYESLTDPSKL--DSGKELKIDIIPNPQERTLTLVDT 93 (239)
T ss_dssp CEEEECCHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--TTCCCCCEEEEEETTTTEEEEEEC
T ss_pred ceeEeehhhHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhccCchhc--cCCCceEEEEEEeCCccEEEEEeC
Confidence 589999999999999999999999999999999999999999999999999877 566789999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEe
Q 003458 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (818)
Q Consensus 157 GiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~ 236 (818)
|+|||+++|.++|++||+||++.|+++++.+.+..+||||||||||+||||++|+|+|+++++.+|.|+|++++.|+|.+
T Consensus 94 GiGMt~edL~~~LgtIA~Sgtk~f~e~~~~~~d~~~IGqFGvGfySaf~vadkv~V~Sk~~~~~~~~W~s~~~g~fti~~ 173 (239)
T 3nmq_A 94 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRA 173 (239)
T ss_dssp SCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSTTEEEEEE
T ss_pred CCCCCHHHHHHHHHHHhcccchhhhhhhcccCCcccccccCcccccccccCCEEEEEEeeCCCceeEEEECCCCcEEEEe
Confidence 99999999999999999999999999988656788999999999999999999999999988889999999999999998
Q ss_pred CCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeeccccc
Q 003458 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVD 290 (818)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~ 290 (818)
++ ++...+||+|+|||++++.+|+++++|+++|++||+||+|||+++..++.+
T Consensus 174 ~~-~~~~~~GT~I~L~lk~d~~e~l~~~~i~~lv~kys~fi~~pI~~~~~~~~~ 226 (239)
T 3nmq_A 174 DH-GEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKERE 226 (239)
T ss_dssp CC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHCTTCSSCEEECCCSCC-
T ss_pred cC-CCcCCCCCEEEEEECCChHHhcCHHHHHHHHHHHHhccCCceEEeeeeecc
Confidence 64 456789999999999999999999999999999999999999999876544
No 17
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=100.00 E-value=1.7e-52 Score=439.55 Aligned_cols=237 Identities=54% Similarity=0.898 Sum_probs=194.8
Q ss_pred cccCCCCCCCCCchhhhhhhhhhhhhhhccccccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhc
Q 003458 45 EKLGAVPNGLSTDSDVAKREAESISKRSLRNNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSL 124 (818)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l 124 (818)
.+++..+++..++.+++.. +..+++.||+|+++||++|+++||+|+++|||||||||+||++|+||.++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~-----------~~~e~~~Fqaei~~Ll~ll~~~lYs~~~iflRELIsNA~DA~~k~r~~~l 84 (256)
T 3o0i_A 16 PRGSHMPEETQTQDQPMEE-----------EEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESL 84 (256)
T ss_dssp -------------------------------CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCcccccccccccc-----------ccceeEEeEeeHHHHHHHHHHhccCCcHHHHHHHHhChHHHHHHHHHHhc
Confidence 3455555555555554332 34589999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeee
Q 003458 125 TDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVY 204 (818)
Q Consensus 125 ~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F 204 (818)
+++..+ ...+++.|+|.++.+.++|+|.|||+|||+++|.++|++||+||++.|.+.++.+.+...|||||+||||+|
T Consensus 85 ~~~~~~--~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L~~~~~~~~iG~fG~Gf~S~f 162 (256)
T 3o0i_A 85 TDPSKL--DSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAY 162 (256)
T ss_dssp HCGGGG--TTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGG
T ss_pred cCchhc--cCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHHHHHhhccccccchhhhhcccCCccccCCCcchHHHhh
Confidence 999877 666788999999999999999999999999999999999999999999888864456789999999999999
Q ss_pred eeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEe
Q 003458 205 LVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIW 284 (818)
Q Consensus 205 ~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~ 284 (818)
+||++|+|+||++++.++.|++.+++.|++.+.+ +....+||+|+|+||.+..+|++.++|+++|++||+||+|||+++
T Consensus 163 ~Vadkv~V~Sr~~~~~g~~w~s~gg~~~~v~~~~-~~~~~~GT~I~l~LK~~~~e~~e~~~I~~iv~k~s~~l~~PI~~~ 241 (256)
T 3o0i_A 163 LVAEKVTVITKHNDDEQYAWESSAGGSFTVRTDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLF 241 (256)
T ss_dssp GTEEEEEEEEECTTSCEEEEEECSTTEEEEEECC-SSCCSSEEEEEEEECGGGGGGGCHHHHHHHHHHHCTTCSSCEEEC
T ss_pred ccCCeEEEEEcCCCCceEEEEEeccceEEEeeCC-CCCCCCCcEEEEEEcCcchhhccHHHHHHHHHHHHhhCCCCeEEe
Confidence 9999999999998878999999999999999864 345689999999999999999999999999999999999999999
Q ss_pred ecccccccCCC
Q 003458 285 ASKEVDVDVPT 295 (818)
Q Consensus 285 ~~~~~~~~~~~ 295 (818)
..++.++++++
T Consensus 242 ~~~~~~~~~~~ 252 (256)
T 3o0i_A 242 VEKERDKEVSD 252 (256)
T ss_dssp CC---------
T ss_pred eeeeecccCCC
Confidence 88876665543
No 18
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=100.00 E-value=1.2e-50 Score=420.41 Aligned_cols=216 Identities=59% Similarity=0.969 Sum_probs=193.1
Q ss_pred cccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEe
Q 003458 76 NAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRD 155 (818)
Q Consensus 76 ~~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~D 155 (818)
.++++.||+|+++||++|+++||+++.+|||||||||+||++|+||.+++++..+ ...+.+.|+|.++.+..+|+|.|
T Consensus 8 ~~~~~~Fq~ei~~ll~ll~~~lYs~~~~~lrELi~NA~DA~~k~r~~~~~~~~~~--~~~~~i~I~I~~d~~~~~i~V~D 85 (228)
T 3t0h_A 8 EVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKL--DSGKELHINLIPNKQDRTLTIVD 85 (228)
T ss_dssp CCEEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHTTCGGGG--TTCCCCCEEEEEETTTTEEEEEE
T ss_pred cccceEEEeeHHHHHHHHHHhhcCCcHHHHHHHHHCHHHHHHHHHhhhccCcccc--cCCCceEEEEEEeCCeeEEEEEe
Confidence 3589999999999999999999999999999999999999999999999998876 55667899999999899999999
Q ss_pred CCCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEE
Q 003458 156 RGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAIS 235 (818)
Q Consensus 156 NGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~ 235 (818)
||+|||+++|..+|++||+||++.|.+.++.+.+...||+||+||||+|+||++|+|+||++++.++.|++.+++.|++.
T Consensus 86 nG~GMs~edl~~~l~~ia~S~~~~f~~~l~~~~~~~~iG~fG~G~~S~~~vad~v~V~Sr~~~~~~~~w~~~g~~~~~v~ 165 (228)
T 3t0h_A 86 TGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVR 165 (228)
T ss_dssp CSCCCCHHHHHTGGGSCHHHHHHHHHHHHHTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCEEEEEECSTTEEEEE
T ss_pred CCCCCCHHHHHHHHHhhccccchhhhhhhcccCCcccCCCCChhHHHHhccCCEEEEEEecCCCCcEEEEEcCCceEEEe
Confidence 99999999999999999999999998877644567899999999999999999999999998878999999999999998
Q ss_pred eCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecccccccCC
Q 003458 236 EDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVDVP 294 (818)
Q Consensus 236 ~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~~~ 294 (818)
+.+ .....+||+|+|+||++..+|++.++|+++|++||+||++||+++..++++++++
T Consensus 166 ~~~-~~~~~~GT~I~v~Lk~~~~E~~e~~~i~~iv~~~a~~l~~Pi~~~~~~~~~~~~~ 223 (228)
T 3t0h_A 166 TDT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKEVS 223 (228)
T ss_dssp ECC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHSTTCSSCEEECCC--------
T ss_pred ecC-CCCCCCCcEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCeEEeecceeeccCC
Confidence 864 2456899999999999999999999999999999999999999998876665554
No 19
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=100.00 E-value=3.7e-50 Score=418.97 Aligned_cols=210 Identities=62% Similarity=1.000 Sum_probs=178.7
Q ss_pred ccccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEE
Q 003458 75 NNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIR 154 (818)
Q Consensus 75 ~~~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~ 154 (818)
+..+++.||+++++|+++|+++||++|.+|||||||||+||++|+||.+++++.++ ...+++.|+|.++.+..+|+|.
T Consensus 7 ~~~~~~~F~~ei~~L~~ll~~~lys~~~~~lrELI~NA~DA~ak~~~~~~~~~~~~--~~~~~~~I~i~~d~~~~~i~I~ 84 (236)
T 2gqp_A 7 EKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENAL--AGNEELTVKIKCDKEKNLLHVT 84 (236)
T ss_dssp HTTTEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTTT--TTCCCCCEEEEEETTTTEEEEE
T ss_pred ccccccchhHhHHHHHHHHHHhhcCCchHHHHHHHHhHHHhhhhhhhhcccCcccc--cCCCceEEEEEEcCCCCEEEEE
Confidence 45689999999999999999999999999999999999999999999999999876 5566788999999888999999
Q ss_pred eCCCCCCHHHHHHHHHHHhccCchhHHHhhhhc-----CCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCC
Q 003458 155 DRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTS-----GDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD 229 (818)
Q Consensus 155 DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~-----~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~ 229 (818)
|||+||+++||.++|++||+||++.|+++++.. .+...||||||||||+||||++|+|.|++.++.++.|++++
T Consensus 85 DnG~GMt~edl~~~l~~ia~Sg~~~f~~kl~~~~~~~~~d~~~iG~fGiG~~S~f~va~~v~V~Sr~~~~~~~~w~~~g- 163 (236)
T 2gqp_A 85 DTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDS- 163 (236)
T ss_dssp ECSCCCCHHHHHHHHHCC---------------------CHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEESS-
T ss_pred ECCcCCCHHHHHHHHhhhcccccHhHHHHhhccccccccchhhcCCCCcchhhHhhcCCEEEEEEeCCCCceEEEEEeC-
Confidence 999999999999999999999999998877643 45679999999999999999999999999877799999998
Q ss_pred CceEEEeCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeecc
Q 003458 230 GAFAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASK 287 (818)
Q Consensus 230 ~~f~i~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~ 287 (818)
+.|++.+.+++....+||+|+|+|+++..+|++.++|+++|++||+|++|||+++..+
T Consensus 164 g~~~i~~~~~~~~~~~GT~I~l~Lk~~~~~~le~~~i~~lv~~~s~~i~~pI~~~~~~ 221 (236)
T 2gqp_A 164 NEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSK 221 (236)
T ss_dssp SCEEEEECTTCSCSSSEEEEEEEECGGGGGGGCHHHHHHHHHHHHTTCSSCEEEEEEC
T ss_pred CEEEEEeccCCCCCCCCeEEEEEECCcchhhChHHHHHHHHHHHhhhCCCceEEeeee
Confidence 8999988643335689999999999999999999999999999999999999998753
No 20
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=100.00 E-value=1.7e-46 Score=387.04 Aligned_cols=212 Identities=58% Similarity=0.959 Sum_probs=193.2
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeC
Q 003458 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (818)
Q Consensus 77 ~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (818)
.+++.||+++++|+++|+++||+|+.+|||||||||+||++++|+.+++++..+ ...+++.|+|..+.+..+|+|.||
T Consensus 3 ~~~~~f~~~~~~l~~ll~~~lys~~~~~lrELI~NA~DA~a~~~~~~~~~~~~~--~~~~~i~I~i~~~~~~~~i~I~Dn 80 (220)
T 2wer_A 3 SETFEFQAEITQLMSLIINTVYSNKEIFLREIVSNASDALDKIRYKSLSDPKQL--ETEPDLFIRITPKPEQKVLEIRDS 80 (220)
T ss_dssp CEEEECCHHHHHHHHHHHHHCCSSTTHHHHHHHHHHHHHHHHHHHHHTTCGGGG--GGCCCCCEEEEEEGGGTEEEEEEC
T ss_pred CcceeeeecHHHHHHHHHHhccCCchHHHHHHHHhHHHHHHHHHhhcccCchhc--cCCCcEEEEEEECCCCCEEEEEEc
Confidence 489999999999999999999999999999999999999999999999998876 445677899988888889999999
Q ss_pred CCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEe
Q 003458 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (818)
Q Consensus 157 GiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~ 236 (818)
|+||++++|.++|++||+||++.|+++++...+...||+|||||||+|++|++|+|+|++.++.++.|.+++++.|++.+
T Consensus 81 G~GMs~edl~~~l~~ia~S~~~~f~~k~~~~~~~~~iG~fGiG~~s~~~~~~~v~v~S~~~~~~~~~~~~~~~~~~~i~~ 160 (220)
T 2wer_A 81 GIGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTL 160 (220)
T ss_dssp SCCCCHHHHHHHTTTSCCTTHHHHHHHHTTTCCGGGGGGGTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSSEEEEEE
T ss_pred CCCCCHHHHHHHHHhHhcccchhHHHHhhccCCcccCCccchhHHHhhhcCCeeEEEEecCCCceeEEEeCCCCceEeec
Confidence 99999999999999999999999998887556778999999999999999999999999987779999999999999987
Q ss_pred CCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeeccccc
Q 003458 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVD 290 (818)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~ 290 (818)
.+......+||+|+|+|+++..+|++.++|+++|++|+.|+++||+++..++++
T Consensus 161 ~~~~~~~~~GT~I~l~Lk~~~~~~~e~~~i~~~v~~~a~~l~~PI~~~~~~~~~ 214 (220)
T 2wer_A 161 DEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEFVAYPIQLVVTKEVE 214 (220)
T ss_dssp CSSSCCCSSEEEEEEEECTTCGGGGCHHHHHHHHHHHCTTCCSCEEECCCCCCC
T ss_pred ccCCCCCCCCeEEEEEECcchHHhCCHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 532235689999999999999999999999999999999999999999876443
No 21
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=100.00 E-value=2.3e-46 Score=396.13 Aligned_cols=213 Identities=59% Similarity=0.974 Sum_probs=191.7
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeC
Q 003458 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (818)
Q Consensus 77 ~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (818)
.+++.||+++++|+++|+++||++|.+|||||||||+||++++|+.++++++++ .....+.|+|..+.+..+|+|.||
T Consensus 45 ~e~~~F~~ei~~Ll~ll~~~lys~~~~~lrELI~NA~DA~ak~r~~~l~~~~~~--~~~~~i~I~i~~d~~~~~I~I~Dn 122 (264)
T 1yc1_A 45 VETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKL--DSGKELHINLIPNKQDRTLTIVDT 122 (264)
T ss_dssp EEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG--GGCCCCCEEEEEETTTTEEEEEEC
T ss_pred ceeEEehHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhhhhhhhccCcccc--CCCCeEEEEEEECCCeeEEEEEEC
Confidence 479999999999999999999999999999999999999999999999998876 445678899888888899999999
Q ss_pred CCCCCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEe
Q 003458 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISE 236 (818)
Q Consensus 157 GiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~ 236 (818)
|+||++++|.++|++||+||++.|+++++...+...||+|||||||+|++|++|+|.|++.++.++.|++.+++.|++.+
T Consensus 123 G~GMs~edL~~~l~~ia~S~~~~f~~~l~~~~d~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~w~~~~~~~~~i~~ 202 (264)
T 1yc1_A 123 GIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVTVITKHNDDEQYAWESSAGGSFTVRT 202 (264)
T ss_dssp SCCCCHHHHHHHHHSCTTSCHHHHHHHHHTTCCGGGGGGGTCGGGGHHHHEEEEEEEEECTTSCCEEEEECSTTEEEEEE
T ss_pred CcCCCHHHHHHHHHhhccccchhhhhhhccccchhhcCCCCCCccccccCCCEEEEEEecCCCceEEEEEcCCceEEEee
Confidence 99999999999999999999999988887555678999999999999999999999999987779999999989999988
Q ss_pred CCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEeeccccccc
Q 003458 237 DTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWASKEVDVD 292 (818)
Q Consensus 237 ~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~~~~~~~~ 292 (818)
.+ +....+||+|+|+|+++..+|++.++|+++|++||.|++|||+++..++++++
T Consensus 203 ~~-~~~~~~GT~I~l~Lk~~~~e~~e~~~i~~lv~k~s~fi~~PI~~~~~~~~~~~ 257 (264)
T 1yc1_A 203 DT-GEPMGRGTKVILHLKEDQTEYLEERRIKEIVKKHSQFIGYPITLFVEKERDKE 257 (264)
T ss_dssp CC-SSCCSSEEEEEEEECGGGGGGGSHHHHHHHHHHHTTTCSSCEEECCCC-----
T ss_pred cC-CCCCCCCeEEEEEECCchhhhhhHHHHHHHHHHHHhhCCCCEEEeeccccccc
Confidence 53 23468999999999999999999999999999999999999999987654433
No 22
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=100.00 E-value=4.2e-41 Score=350.50 Aligned_cols=204 Identities=46% Similarity=0.820 Sum_probs=183.2
Q ss_pred ccccchhhhHHHHHHHHHHcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeC
Q 003458 77 AEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDR 156 (818)
Q Consensus 77 ~e~~~Fqaev~~ll~ll~~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DN 156 (818)
.+++.||+++++|+++|+++||++|.+|||||||||+||++++|+..++++.+. .....+.|+|.++.++.+|+|.||
T Consensus 24 ~e~~~f~~~i~~L~~~l~~~lys~~~~~lrELI~NA~DA~~~~r~~~~~~~~~~--~~~~~~~I~i~~~~~~~~i~I~Dn 101 (235)
T 2ior_A 24 QETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAADKLRFRALSNPDLY--EGDGELRVRVSFDKDKRTLTISDN 101 (235)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHTSCGGGG--TTCCCCCEEEEEETTTTEEEEEEC
T ss_pred cccEEeehhHHHHHHHHHHhhcCCHHHHHHHHHhCHHHHHHHHHhhhccCcccc--CCCceEEEEEEEcCCceEEEEEEC
Confidence 478999999999999999999999999999999999999999999999988766 445567899988888889999999
Q ss_pred CCCCCHHHHHHHHHHHhccCchhHHHhhhh--cCCCCccccccccceeeeeeccEEEEEEeeCC---CeeEEEEEcCCCc
Q 003458 157 GIGMTKEDLIKNLGTIAKSGTSAFVEKMQT--SGDLNLIGQFGVGFYSVYLVADYVEVISKHND---DKQYVWESKADGA 231 (818)
Q Consensus 157 GiGMT~~dL~~~LgtIa~Sg~~~f~~~l~~--~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~---d~~~~W~s~~~~~ 231 (818)
|+||++++|.++|++||+||++.|.++++. ..+...+|+||+||||+|++|++|+|+|++.+ ..++.|.+++++.
T Consensus 102 G~GMs~edl~~~~~~ia~S~~~~f~~~l~~~~~~~~~~iG~fGiG~~S~~~~~~~v~V~Sr~~~~~~~~~~~w~~~~~~~ 181 (235)
T 2ior_A 102 GVGMTRDEVIDHLGTIAKSGTKSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGE 181 (235)
T ss_dssp SSCCCHHHHHHHHTTCCCTTHHHHHHHCCSCHHHHHHHHTTCCCCGGGGGGTEEEEEEEEECTTSCGGGEEEEEECSSSE
T ss_pred CCCCCHHHHHHHHHHHccccccchhhhhccccccccccCCCCChhHHHHHhCcCeEEEEEecCCCCCceeEEEEecCCCc
Confidence 999999999999999999999999876541 12356899999999999999999999999985 4589999999899
Q ss_pred eEEEeCCCCCCCCCCcEEEEEecccccccccHHHHHHHHHHhcCCCCcceEEee
Q 003458 232 FAISEDTWNEPLGRGTEIRLHLRDEAGEYLEESKLKELVKKYSEFINFPIYIWA 285 (818)
Q Consensus 232 f~i~~~~~~~~~~~GT~I~L~Lk~~~~e~l~~~~l~~lv~kys~fi~~PI~l~~ 285 (818)
|++.+.+ ...+||+|+|+|+++..+|++.++|+++|++|+.|+++||+++.
T Consensus 182 ~~i~~~~---~~~~GT~V~v~Lk~~~~~~~e~~~i~~lv~~ya~~l~~PI~~~~ 232 (235)
T 2ior_A 182 YTVADIT---KEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEK 232 (235)
T ss_dssp EEEEEEC---CCSCEEEEEEEECTTCGGGGCHHHHHHHHHHHTTSCCSCEEEC-
T ss_pred EEEeeCC---CCCCCEEEEEEEcCchhhhCCHHHHHHHHHHHhccCCCCeEecc
Confidence 9998742 45799999999999999999999999999999999999999974
No 23
>1sf8_A Chaperone protein HTPG; four helix bundle dimerization interface, exposed amphipathic helix, three stranded beta sheet; 2.60A {Escherichia coli} SCOP: d.271.1.1
Probab=100.00 E-value=1.1e-33 Score=268.10 Aligned_cols=115 Identities=24% Similarity=0.398 Sum_probs=105.3
Q ss_pred HHHHHHHHhhcCCCCccEEEEeeccCCCCeEEEecCCcchHHHHHHHHHhccccchhhhhcccccceeeCCCChHHHHHH
Q 003458 647 KELTKWWKGALASENVDDVKVSNRLDNTPCVVVTSKYGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELR 726 (818)
Q Consensus 647 ~~L~~~lK~~L~~~~V~~V~vS~RL~~sP~~lv~~~~g~s~~MeRimkaqa~~d~~~~~~~~~kkiLEINp~HPlIk~L~ 726 (818)
-.+++|||++||++ |.+|++|+||++||||||+++||||++|||||++|+. .++..||+|||||+||||++|.
T Consensus 11 ~~~~~~~K~~L~dk-V~~V~vS~RL~~sPa~lv~~e~g~s~~Merimka~~~------~~~~~k~~LEINp~HplIk~L~ 83 (126)
T 1sf8_A 11 GSFIDRVKALLGER-VKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQ------KVPEVKYIFELNPDHVLVKRAA 83 (126)
T ss_dssp -CHHHHHHHHHGGG-SSEEEECCCCSSCCEEEECCTTSCCHHHHHHHHTTTS------CCCCCCCEEEECTTSHHHHHHH
T ss_pred hHHHHHHHHHhcCc-ccEEEEeecccCCCEEEEecCcccCHHHHHHHHHhcc------ccccCCeeeeECCCCHHHHHHH
Confidence 35899999999999 9999999999999999999999999999999998842 2456899999999999999997
Q ss_pred HhhccCCCchhHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 003458 727 ERVVKDPEDAGVQQTAQLIYQTALMESGFSLNDPKDFASRIYSTVK 772 (818)
Q Consensus 727 ~~~~~d~~d~~~~~~a~~Lyd~AlL~sG~~l~D~~~fa~ri~~ll~ 772 (818)
+. .+++.++++|++|||+|+|++||.++||+.|++|+++||.
T Consensus 84 ~~----~~~~~~k~l~~lLyd~AlL~~G~~leDp~~F~~Ri~~ll~ 125 (126)
T 1sf8_A 84 DT----EDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLV 125 (126)
T ss_dssp HC----CSHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHH
T ss_pred Hh----cChHHHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHh
Confidence 63 3567899999999999999999999999999999999986
No 24
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=99.70 E-value=2.2e-17 Score=179.96 Aligned_cols=150 Identities=20% Similarity=0.344 Sum_probs=110.0
Q ss_pred HcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCC-cEEEEEeCCCCCCHHHHHHHHHHHh
Q 003458 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIKNLGTIA 173 (818)
Q Consensus 95 ~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~~dL~~~LgtIa 173 (818)
-....++..+|+|||+||+||.+ ..|.|.++.++ ..|+|.|||+||+++++...+.+++
T Consensus 19 gevi~~~~~~v~ELi~NaidA~a--------------------~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ 78 (333)
T 1b63_A 19 GEVVERPASVVKELVENSLDAGA--------------------TRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHA 78 (333)
T ss_dssp HHHCSSHHHHHHHHHHHHHHTTC--------------------SEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTC
T ss_pred CCchhCHHHHHHHHHHHHHHCCC--------------------CeEEEEEEeCCceEEEEEEcCCCcCHHHHHHhhhccc
Confidence 44556899999999999999863 14555555443 6899999999999999999998888
Q ss_pred ccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCC-eeEEEEEcCCC-ceEEEeCCCCCCCCCCcEEEE
Q 003458 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADG-AFAISEDTWNEPLGRGTEIRL 251 (818)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d-~~~~W~s~~~~-~f~i~~~~~~~~~~~GT~I~L 251 (818)
.|....+ +.+. ....+|++|+|++|++++| +|+|+|++.++ .+|.|..+|.. ...+.+. ...+||+|++
T Consensus 79 tsK~~~~-~d~~---~~~~~G~~G~gl~si~~vs-~l~v~s~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~GT~V~v 149 (333)
T 1b63_A 79 TSKIASL-DDLE---AIISLGFRGEALASISSVS-RLTLTSRTAEQQEAWQAYAEGRDMNVTVKPA----AHPVGTTLEV 149 (333)
T ss_dssp CSSCCSH-HHHH---TCCSSCCSSCHHHHHHTTS-EEEEEEECTTCSSEEEEEEETTTTEEEEEEE----CCCSEEEEEE
T ss_pred ccCcccc-chhh---hccccCccccchhhhhcCC-cEEEEEecCCCceEEEEEEcCCcceEeeecc----cCCCCCEEEE
Confidence 7632221 1121 2356899999999999999 89999999764 47777776654 4444442 3479999999
Q ss_pred E------------ecccccccccHHHHHHHHHHhcCC
Q 003458 252 H------------LRDEAGEYLEESKLKELVKKYSEF 276 (818)
Q Consensus 252 ~------------Lk~~~~e~l~~~~l~~lv~kys~f 276 (818)
+ ++....+ -.+|.+++++|+-.
T Consensus 150 ~~Lf~n~P~r~kflk~~~~e---~~~i~~~~~~~al~ 183 (333)
T 1b63_A 150 LDLFYNTPARRKFLRTEKTE---FNHIDEIIRRIALA 183 (333)
T ss_dssp ESTTTTCHHHHHTCCCHHHH---HHHHHHHHHHHHHH
T ss_pred ecccccchhhhhhhccHHHH---HHHHHHHHHHHhcc
Confidence 8 2322222 27889999999853
No 25
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=99.49 E-value=1.4e-14 Score=159.80 Aligned_cols=165 Identities=18% Similarity=0.243 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCCCC-----chhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeC-CCcEEEEEeCCCC
Q 003458 86 VSRLMDIIINSLYSN-----KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIG 159 (818)
Q Consensus 86 v~~ll~ll~~sLYs~-----~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~-~~~~L~I~DNGiG 159 (818)
++.|-+.+++.+++. +..+|+|||+||+||.+ ..|.|.+.. +...|+|.|||.|
T Consensus 15 I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a--------------------~~I~I~i~~~~~~~I~V~DnG~G 74 (365)
T 1h7s_A 15 IKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGA--------------------TNIDLKLKDYGVDLIEVSDNGCG 74 (365)
T ss_dssp --------------CEEECCHHHHHHHHHHHHHHTTC--------------------SEEEEEEEGGGTSEEEEEECSCC
T ss_pred hccCCHHHHHHhcCCCchhhHHHHHHHHHHHHHHCCC--------------------CEEEEEEEeCCcEEEEEEECCCC
Confidence 445555666666664 68999999999999852 135555543 3468999999999
Q ss_pred CCHHHHHHHHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCC-eeEEEEEcCCCceEEEeCC
Q 003458 160 MTKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADGAFAISEDT 238 (818)
Q Consensus 160 MT~~dL~~~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d-~~~~W~s~~~~~f~i~~~~ 238 (818)
|+.+++...+...+.|....+ .+.......|++|+|++|++++| +|+|+|++.+. .+|.|..+++|.+.....
T Consensus 75 i~~~~l~~~f~~~~tsK~~~~----~dl~~i~s~G~rG~gl~si~~vs-~v~v~t~~~~~~~~~~~~~~~~G~~~~~~~- 148 (365)
T 1h7s_A 75 VEEENFEGLTLKHHTSKIQEF----ADLTQVETFGFRGEALSSLCALS-DVTISTCHASAKVGTRLMFDHNGKIIQKTP- 148 (365)
T ss_dssp CCGGGSGGGGC--------------CCTTCSEEESSSSSHHHHHHHHS-EEEEEEECTTCSSCEEEEECTTSCEEEEEE-
T ss_pred cCHHHHHHHhhhccccccccc----cchhcccccCCCCchhhhhhhhc-cEEEEEccCCCcceEEEEEcCCCceEeecc-
Confidence 999999988877776532211 00011234799999999999999 99999998754 489999876666544321
Q ss_pred CCCCCCCCcEEEEE-ecccc----cccc-----cHHHHHHHHHHhcCCCC
Q 003458 239 WNEPLGRGTEIRLH-LRDEA----GEYL-----EESKLKELVKKYSEFIN 278 (818)
Q Consensus 239 ~~~~~~~GT~I~L~-Lk~~~----~e~l-----~~~~l~~lv~kys~fi~ 278 (818)
....+||+|+++ |-... .+|+ +..++.+++++|+-+-|
T Consensus 149 --~~~~~GT~V~v~~LF~n~P~R~k~flk~~~~e~~~i~~~v~~~al~~p 196 (365)
T 1h7s_A 149 --YPRPRGTTVSVQQLFSTLPVRHKEFQRNIKKEYAKMVQVLHAYCIISA 196 (365)
T ss_dssp --CCCCSEEEEEEESTTTTSHHHHHHHHHTHHHHHHHHHHHHHHHHHHCT
T ss_pred --cCCCCCcEEEEeecccccchhhhhhccchHHHHHHHHHhhhhhhhcCC
Confidence 235799999997 21100 0132 34788999999987654
No 26
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=99.41 E-value=5.2e-14 Score=155.29 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=104.2
Q ss_pred HcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeC-CCcEEEEEeCCCCCCHHHHHHHHHHHh
Q 003458 95 NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK-EKKILSIRDRGIGMTKEDLIKNLGTIA 173 (818)
Q Consensus 95 ~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~-~~~~L~I~DNGiGMT~~dL~~~LgtIa 173 (818)
...-.++..+++|||+||.||.+ . .|.|.+.. +...|+|.|||.||+.+++...+...+
T Consensus 20 gevi~~~~~vv~eLv~NaiDA~a------------------~--~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~ 79 (367)
T 3h4l_A 20 GQVITDLTTAVKELVDNSIDANA------------------N--QIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHY 79 (367)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTTC------------------S--EEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEE
T ss_pred CCcccCHHHHHHHHHHHHHHCCC------------------C--EEEEEEEeCCEEEEEEEECCCCcChhHhccceeccc
Confidence 34456788999999999999863 1 35555533 346899999999999999875433222
Q ss_pred ccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEE--
Q 003458 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRL-- 251 (818)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L-- 251 (818)
.|....+ .+.......|.+|+|++|+++|| +|+|+|++.+..++.|..+++|.+.... + ....+||+|++
T Consensus 80 tsK~~~~----~Dl~~i~t~GfrGeaL~Si~avS-~l~V~sr~~~~~~~~~~~~~~G~~~~~~-~--~~~~~GTtV~v~~ 151 (367)
T 3h4l_A 80 TSKIAKF----QDVAKVQTLGFRGEALSSLCGIA-KLSVITTTSPPKADKLEYDMVGHITSKT-T--TSRNKGTTVLVSQ 151 (367)
T ss_dssp C-------------CCCCEEEETTHHHHHHHHSS-EEEEEEESSTTCEEEEEECTTCCEEEEE-E--ECCSSEEEEEEES
T ss_pred cCcCCch----hhhhhhhccCccchHHHHhhccC-EEEEEEEECCCCEEEEEEcCCCcEEeec-c--ccCCCCeEEEEch
Confidence 2221111 10112245688899999999999 7999999877678999997666654322 1 23579999999
Q ss_pred -----------EecccccccccHHHHHHHHHHhcCCC
Q 003458 252 -----------HLRDEAGEYLEESKLKELVKKYSEFI 277 (818)
Q Consensus 252 -----------~Lk~~~~e~l~~~~l~~lv~kys~fi 277 (818)
+++....+| .+|.++|++|+-.-
T Consensus 152 LF~n~P~R~k~flk~~~~e~---~~i~~~l~~~Al~~ 185 (367)
T 3h4l_A 152 LFHNLPVRQKEFSKTFKRQF---TKCLTVIQGYAIIN 185 (367)
T ss_dssp TTTTCHHHHHHHHTTHHHHH---HHHHHHHHHHHHHC
T ss_pred hhccCchhhhhhccchHHHH---HHHHHHHHHHHhhC
Confidence 455444443 68999999998543
No 27
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=99.28 E-value=9e-13 Score=144.39 Aligned_cols=155 Identities=26% Similarity=0.332 Sum_probs=101.5
Q ss_pred HHHHH-HcCCCCchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCC-cEEEEEeCCCCCCHHHHHH
Q 003458 90 MDIII-NSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK-KILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 90 l~ll~-~sLYs~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~-~~L~I~DNGiGMT~~dL~~ 167 (818)
...|. ...-..+...|.|||.||.||.+ . .|.|.++.++ ..|+|.|||.||+.+++..
T Consensus 17 ~~~Iaagevi~~~~~vv~eLv~NAidA~a------------------~--~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~ 76 (348)
T 3na3_A 17 VNRIAAGEVIQRPANAIKEMIENCLDAKS------------------T--SIQVIVKEGGLKLIQIQDNGTGIRKEDLDI 76 (348)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHTTC------------------S--EEEEEEEGGGTSEEEEEECSCCCCGGGGGT
T ss_pred HHhhcccCcccCHHHHHHHHHHHHHHcCC------------------C--EEEEEEEeCCEEEEEEEECCcCcChHHhhh
Confidence 33443 34456789999999999999952 1 3555554443 4699999999999999875
Q ss_pred HHHHHhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCC-eeEEEEEcCCCce-EEEeCCCCCCCCC
Q 003458 168 NLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDD-KQYVWESKADGAF-AISEDTWNEPLGR 245 (818)
Q Consensus 168 ~LgtIa~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d-~~~~W~s~~~~~f-~i~~~~~~~~~~~ 245 (818)
.+...+.|....+ +.+ ......|.+|+|++|+..|| +++|+|+..++ .+|.|...++... .+.+. ...+
T Consensus 77 ~~~~~~tsK~~~~-~dl---~~i~s~GfrGeaL~Si~avs-~l~v~sr~~~~~~~~~~~~~~G~~~~~~~~~----~~~~ 147 (348)
T 3na3_A 77 VCERFTTSKLQSF-EDL---ASISTYGFRGEALASISHVA-HVTITTKTADGKCAYRASYSDGKLKAPPKPC----AGNQ 147 (348)
T ss_dssp TTSTTCCSSCCCC-------------CCTTCHHHHHHHSS-EEEEEEECTTCSSEEEEEEETTEESSCCEEE----CCCS
T ss_pred hhccccccccCcc-hhh---hccccCCcCChHHHHhhccc-EEEEEEEECCCCceEEEEEeCCEEeeeeeEe----cCCC
Confidence 4333232221111 001 11245799999999999999 89999999854 5888887754221 13332 3478
Q ss_pred CcEEEEE------------ecccccccccHHHHHHHHHHhcCC
Q 003458 246 GTEIRLH------------LRDEAGEYLEESKLKELVKKYSEF 276 (818)
Q Consensus 246 GT~I~L~------------Lk~~~~e~l~~~~l~~lv~kys~f 276 (818)
||+|++. |+.... +-.+|++++++|+-.
T Consensus 148 GTtV~v~~LF~n~P~R~k~lk~~~~---e~~~i~~~l~~~Al~ 187 (348)
T 3na3_A 148 GTQITVEDLFYNIATRRKALKNPSE---EYGKILEVVGRYSVH 187 (348)
T ss_dssp EEEEEEESTTTTCHHHHHTSCCHHH---HHHHHHHHHHHHHHH
T ss_pred CcEEEECcccccCchhhhhccccHH---HHHHHHHHHHHHHhh
Confidence 9999994 444333 347889999998854
No 28
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=98.86 E-value=5.4e-09 Score=106.36 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=89.1
Q ss_pred chhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHH-------HHH-HHHH
Q 003458 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL-------IKN-LGTI 172 (818)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL-------~~~-LgtI 172 (818)
+...++|||.||+||... + ..-.|.|.++.+ ..|+|.|||.||+.+++ ... ++..
T Consensus 18 ~~~~v~Elv~NsiDa~~~--------------g--~a~~I~V~i~~~-g~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~ 80 (201)
T 3fv5_A 18 PNHLGQEVIDNSVDEALA--------------G--HAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRL 80 (201)
T ss_dssp THHHHHHHHHHHHHHHHT--------------T--CCSEEEEEECTT-SCEEEEECSSCCCCSBCTTCSSBHHHHHHHCC
T ss_pred hhhhhHHHHHHHHHHHhc--------------C--CCcEEEEEEeCC-CEEEEEECCCCcCcccccccCcchhheeeeee
Confidence 478999999999999741 1 123577766654 58999999999999874 222 3332
Q ss_pred hccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCce--EEEeCCCCCCCCCCcEEE
Q 003458 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF--AISEDTWNEPLGRGTEIR 250 (818)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f--~i~~~~~~~~~~~GT~I~ 250 (818)
-.+|+ |-... .....|..|+|+-|+-.+|++++|+|+..+ ..|...-.+ |.. .+...........||+|+
T Consensus 81 hatsK--~~~~~----~~~s~GfrGeglssinalS~~l~v~t~~~g-~~~~~~~~~-G~~~~~~~~~g~~~~~~~GT~V~ 152 (201)
T 3fv5_A 81 HAGGK--FSNKN----YQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFEN-GEKVQDLQVVGTCGKRNTGTSVH 152 (201)
T ss_dssp ---------------------------CHHHHHTEEEEEEEEEETT-EEEEEEEET-TEEEEEEEEEEECCTTCCEEEEE
T ss_pred ccccC--cCCCc----ccccCcccceecchhhcccceEEEEEEecC-ceEEEEEeC-CEEcccceecccCCCCCCCeEEE
Confidence 22222 32111 112479999999999999999999999764 333333222 221 222211001146899999
Q ss_pred EEecccc--cccccHHHHHHHHHHhcCCC-CcceEEee
Q 003458 251 LHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIWA 285 (818)
Q Consensus 251 L~Lk~~~--~e~l~~~~l~~lv~kys~fi-~~PI~l~~ 285 (818)
+.-.... ..-.+...|.++++.|+-.- ...|.+..
T Consensus 153 f~Pdr~~F~~~~~e~~~i~~~l~~lA~l~pgv~~~l~~ 190 (201)
T 3fv5_A 153 FWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKD 190 (201)
T ss_dssp EEECGGGSSCCCCCHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEECHHHcCCCccCHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9632211 12346788999999998332 24555554
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=98.84 E-value=2.2e-09 Score=122.15 Aligned_cols=147 Identities=21% Similarity=0.299 Sum_probs=95.0
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeC---CCcEEEEEeCCCCCCHHHHHHHHHHHhccCchh
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSA 179 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~---~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~ 179 (818)
..|+|||+||.||... . +..+.+.|.+..+. +...|+|.|||+||+.+++...|.....+++.
T Consensus 35 qvl~nLv~NAida~~~--------g-----g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~- 100 (471)
T 1mu5_A 35 QTVRELIENSLDATDV--------H-----GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY- 100 (471)
T ss_dssp HHHHHHHHHHHHTTGG--------G-----TCCCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CC-
T ss_pred HHHHHHHHHHHHHhhc--------C-----CCceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhccccccccc-
Confidence 3678999999999751 0 01123444444432 33579999999999999998766543222211
Q ss_pred HHHhhhhcCCCCccccccccceeeeeeccE-----EEEEEeeCCCe-eEEEEE--c----CCCceEEEeCCCCCCCCCCc
Q 003458 180 FVEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDDK-QYVWES--K----ADGAFAISEDTWNEPLGRGT 247 (818)
Q Consensus 180 f~~~l~~~~~~~~IGqFGIGF~S~F~Vadk-----V~V~Sk~~~d~-~~~W~s--~----~~~~f~i~~~~~~~~~~~GT 247 (818)
......|.+|+|++++..+++. +.|.|+..+.. ++.|.- . ++..+...+.+ .....+||
T Consensus 101 --------~~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT 171 (471)
T 1mu5_A 101 --------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHGT 171 (471)
T ss_dssp --------CCSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEE-CCTTCCEE
T ss_pred --------ccccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCccccccccc-CCCCCCCE
Confidence 1124568899999999999986 99999887544 555541 1 22233333321 12347899
Q ss_pred EEEEEecccccccccHHHHHHHHHHhc
Q 003458 248 EIRLHLRDEAGEYLEESKLKELVKKYS 274 (818)
Q Consensus 248 ~I~L~Lk~~~~e~l~~~~l~~lv~kys 274 (818)
+|++.++.+..++ ...+.+++++|+
T Consensus 172 ~V~v~l~~~~~e~--~~~I~~~l~~~a 196 (471)
T 1mu5_A 172 SVAISIPGDWPKA--KSRIYEYIKRTY 196 (471)
T ss_dssp EEEEEEECCHHHH--HHHHHHHHHHHH
T ss_pred EEEEEEcCCcchH--HHHHHHHHHHHH
Confidence 9999987654322 268899999987
No 30
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=98.76 E-value=5.9e-09 Score=120.14 Aligned_cols=148 Identities=21% Similarity=0.284 Sum_probs=96.1
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeC---CCcEEEEEeCCCCCCHHHHHHHHHHHhccCchh
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDK---EKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSA 179 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~---~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~ 179 (818)
..|+|||+||.||... . +..+.+.|.+..+. +...|+|.|||+||+.+++...|.....+++.
T Consensus 34 qvl~NLV~NAida~~~-------g------g~~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~- 99 (530)
T 2zbk_B 34 QTVRELIENSLDATDV-------H------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKY- 99 (530)
T ss_dssp HHHHHHHHHHHTTTTT-------T------TCCCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSCCC-
T ss_pred HHHHHHHHHHHHHHhc-------c------CCCeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccCCc-
Confidence 3688999999999741 0 11124566665543 34579999999999999988766443222211
Q ss_pred HHHhhhhcCCCCccccccccceeeeeecc-----EEEEEEeeCCCe-eEEEEE----c--CCCceEEEeCCCCCCCCCCc
Q 003458 180 FVEKMQTSGDLNLIGQFGVGFYSVYLVAD-----YVEVISKHNDDK-QYVWES----K--ADGAFAISEDTWNEPLGRGT 247 (818)
Q Consensus 180 f~~~l~~~~~~~~IGqFGIGF~S~F~Vad-----kV~V~Sk~~~d~-~~~W~s----~--~~~~f~i~~~~~~~~~~~GT 247 (818)
......|.+|+|++++..+++ ++.|.|+..++. ++.|.- . ++......+.+ .....+||
T Consensus 100 --------~~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~-~~~~~~GT 170 (530)
T 2zbk_B 100 --------VNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVE-NTRGFHGT 170 (530)
T ss_dssp --------CCSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEETTTTEEEEEEEEEEE-CCSSCCEE
T ss_pred --------ccccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEecccccCCccccccccC-CCCCCCCc
Confidence 112456899999999999988 799999876543 554441 1 11122233321 11247899
Q ss_pred EEEEEecccccccccHHHHHHHHHHhcC
Q 003458 248 EIRLHLRDEAGEYLEESKLKELVKKYSE 275 (818)
Q Consensus 248 ~I~L~Lk~~~~e~l~~~~l~~lv~kys~ 275 (818)
+|++.++.+..++ ...+.+++++|+-
T Consensus 171 ~V~v~l~~~~~e~--~~~i~~~l~~~Al 196 (530)
T 2zbk_B 171 SVAISIPGDWPKA--KSRIYEYIKRTYI 196 (530)
T ss_dssp EEEEEEECCHHHH--HHHHHHHHHHHHH
T ss_pred EEEEEeccchhhH--HHHHHHHHHHHHH
Confidence 9999987654332 2688899998864
No 31
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.70 E-value=1.3e-08 Score=113.17 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=94.0
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH-------HHHHHhc
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK-------NLGTIAK 174 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~-------~LgtIa~ 174 (818)
...|+|||.||.|+.- +. ....|.|.++.+ ..|+|.|||.||+.+++.. .+.+...
T Consensus 34 ~~~v~Elv~N~iD~a~--~~--------------~~~~I~V~i~~~-~~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~ 96 (390)
T 1kij_A 34 HHLFKEILDNAVDEAL--AG--------------YATEILVRLNED-GSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLH 96 (390)
T ss_dssp HHHHHHHHHHHHHHHH--TT--------------SCCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhh--hC--------------CCCEEEEEEEcC-CEEEEEEcCCCCCHHHhhhccccchhhheeeee
Confidence 4478999999999974 21 123677777654 4899999999999988743 2233333
Q ss_pred cCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCC-CceEEEeCCCCCCCCCCcEEEEEe
Q 003458 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD-GAFAISEDTWNEPLGRGTEIRLHL 253 (818)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~-~~f~i~~~~~~~~~~~GT~I~L~L 253 (818)
.|.+ |-. .......|.+|+|+.++..++++++|+|+..+ ..|...-..+ ....+..........+||+|++..
T Consensus 97 ~~~k-f~~----~~~~~s~G~~G~Gls~v~als~~~~v~t~~~g-~~~~~~~~~G~~~~~~~~~~~~~~~~~GT~V~f~P 170 (390)
T 1kij_A 97 SGGK-FEQ----GAYKVSGGLHGVGASVVNALSEWTVVEVFREG-KHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKP 170 (390)
T ss_dssp EESG-GGG----SSCCCCSCSSTTSHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECGGGCCEEEEEEEE
T ss_pred eccc-ccC----ccccccCCCCCcceeeecccccceEEEEecCC-cEEEEEEcCCcccccceeeccccCCCCCcEEEEEE
Confidence 3322 311 11122468999999999999999999999754 4443333332 222333321000146899999963
Q ss_pred ccccccc----ccHHHHHHHHHHhc
Q 003458 254 RDEAGEY----LEESKLKELVKKYS 274 (818)
Q Consensus 254 k~~~~e~----l~~~~l~~lv~kys 274 (818)
+...| .+...|.+.++.++
T Consensus 171 --d~~~F~~~~~~~~~l~~rl~~~A 193 (390)
T 1kij_A 171 --DPEIFGNLRFDPSKIRARLREVA 193 (390)
T ss_dssp --CHHHHTTCCCCHHHHHHHHHHHH
T ss_pred --ChHHhCCccccHHHHHHHHHHhc
Confidence 22222 45688899999887
No 32
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.54 E-value=1.9e-07 Score=103.83 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=98.0
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHH--------HHHHHHHHh
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIA 173 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~d--------L~~~LgtIa 173 (818)
...+.|||.||.||.-. + ..-.|.|.++.+ ..|+|.|||.||+.++ +.-.|+..-
T Consensus 33 ~~lv~ElvdNsiD~a~~--------------g--~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lh 95 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALA--------------G--HAKRVDVILHAD-QSLEVIDDGRGMPVDIHPEEGVPAVELILCRLH 95 (390)
T ss_dssp HHHHHHHHHHHHHHHHT--------------T--CCSEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHhc--------------C--CCCEEEEEEecC-CEEEEEECCCCcCcccccccCcchhhheeeeec
Confidence 56899999999999631 1 123677777655 4899999999999887 444455533
Q ss_pred ccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCc-eEEEeCCCCCCCCCCcEEEEE
Q 003458 174 KSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGA-FAISEDTWNEPLGRGTEIRLH 252 (818)
Q Consensus 174 ~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~-f~i~~~~~~~~~~~GT~I~L~ 252 (818)
.+|+ |-. ..-...-|..|+|..++=.++.+++|+|+..+ ..|...-..+.. -.+..........+||+|+..
T Consensus 96 agsK--f~~----~~~~~sgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~~~~~g~~~~~~~GT~V~f~ 168 (390)
T 1s16_A 96 AGGK--FSN----KNYQFSGGLHGVGISVVNALSKRVEVNVRRDG-QVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFW 168 (390)
T ss_dssp EESC--SSS----SSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEEEEEEEEEEECCTTCCEEEEEEE
T ss_pred ccCC--cCC----CcccccCCccccchHHHHHhhcccEEEEEECC-cEEEEEEeCCcccccceecccccCCCCceEEEEE
Confidence 3333 210 11122468999999999999999999999754 444433333211 112221101112689999987
Q ss_pred eccccccc----ccHHHHHHHHHHhcCCC-CcceEEe
Q 003458 253 LRDEAGEY----LEESKLKELVKKYSEFI-NFPIYIW 284 (818)
Q Consensus 253 Lk~~~~e~----l~~~~l~~lv~kys~fi-~~PI~l~ 284 (818)
- +..-| .+...|.+.++.++=.- ..-|.+.
T Consensus 169 P--d~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~ 203 (390)
T 1s16_A 169 P--DETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFK 203 (390)
T ss_dssp E--CGGGSSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred E--CccccCcccccHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2 22222 46788888888887432 3445554
No 33
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=98.53 E-value=3e-08 Score=116.08 Aligned_cols=155 Identities=21% Similarity=0.280 Sum_probs=95.1
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCC---cEEEEEeCCCCCCHHHHHHHHHHHhccCch
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK---KILSIRDRGIGMTKEDLIKNLGTIAKSGTS 178 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~---~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~ 178 (818)
...|+|||+||+||... ......|.|.+...+ ..|+|.|||.||+.+++...|..... |.
T Consensus 39 ~~Vl~ELV~NAIDa~~~---------------~g~~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~a-ts- 101 (621)
T 2q2e_B 39 ITTVKEAVDNALDACEE---------------AGILPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLY-GS- 101 (621)
T ss_dssp HHHHHHHHHHHHHHHTT---------------TSCSCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCC-C--
T ss_pred HHHHHHHHHHHHHHHhh---------------cCCCcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhcc-CC-
Confidence 34689999999999851 111224555444333 57999999999999999875533212 21
Q ss_pred hHHHhhhhcCCCCccccccccceeeeeeccE-----EEEEEeeCCC-eeEEEEE-----cCCCceE-EEeCCCCCCCCCC
Q 003458 179 AFVEKMQTSGDLNLIGQFGVGFYSVYLVADY-----VEVISKHNDD-KQYVWES-----KADGAFA-ISEDTWNEPLGRG 246 (818)
Q Consensus 179 ~f~~~l~~~~~~~~IGqFGIGF~S~F~Vadk-----V~V~Sk~~~d-~~~~W~s-----~~~~~f~-i~~~~~~~~~~~G 246 (818)
.|. ......|..|+|+.++..+++. +.|.|+..+. .++.+.- .+.+... ....+ ....+|
T Consensus 102 kf~------~~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~~g~~~~~~~~~~~--~~~~~G 173 (621)
T 2q2e_B 102 RFH------ALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTSTNEPDILVDEVRD--WFRPHG 173 (621)
T ss_dssp -CC------CCC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSSSCSCCCCCEEECC--CSCSSC
T ss_pred ccc------cccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchhccccccccccccc--CCCCCC
Confidence 121 0112348999999999999887 5999987643 4666553 3333321 12211 234689
Q ss_pred cEEEEEeccccccccc--HHHHHHHHHHhcCCC-CcceEEe
Q 003458 247 TEIRLHLRDEAGEYLE--ESKLKELVKKYSEFI-NFPIYIW 284 (818)
Q Consensus 247 T~I~L~Lk~~~~e~l~--~~~l~~lv~kys~fi-~~PI~l~ 284 (818)
|+|++.++.+ |.. ...|.++++.|+-.- ..-|.+.
T Consensus 174 T~V~~~f~~~---~~~~~~~~I~~~L~~lAllnpgv~I~L~ 211 (621)
T 2q2e_B 174 TQIELEMRAA---YVKGRRQSIYEYLKATAIVNPHARITLI 211 (621)
T ss_dssp CCEEEECSCC---CCCCSSSSSHHHHHHHHHHCCSCEEEEC
T ss_pred CEEEEEecCc---cchHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 9999998743 333 256777888776432 3444443
No 34
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=98.39 E-value=4.4e-07 Score=100.97 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=97.4
Q ss_pred CchhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHH--------HHHHHH
Q 003458 100 NKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL--------IKNLGT 171 (818)
Q Consensus 100 ~~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL--------~~~Lgt 171 (818)
.+...+.|||.||.||..+ + .--.|.|.++.+ ..|+|.|||.||+.++. .-.|+.
T Consensus 34 gl~~lv~ElvdNsiDea~~--------------g--~a~~I~V~i~~~-g~I~V~DnG~GIp~~~~~~~~~~~~elv~~~ 96 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALA--------------G--HCKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTV 96 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHT--------------T--CCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTSSBHHHHHHHS
T ss_pred CHHHHHHHHHHhHHHHHhc--------------C--CCCEEEEEEeCC-CEEEEEECCCCcccCcccccCcchHHHhhee
Confidence 3566899999999999741 1 123677777765 48999999999998873 223443
Q ss_pred HhccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCC---CceEEEeCCCCCCCCCCcE
Q 003458 172 IAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD---GAFAISEDTWNEPLGRGTE 248 (818)
Q Consensus 172 Ia~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~---~~f~i~~~~~~~~~~~GT~ 248 (818)
.-.+|+ |- +..-.-.-|..|+|.-|+=.+|.+++|+|+..+ ..|...-..+ ....+.. ....+||+
T Consensus 97 lhagsK--f~----~~~~~vSgGl~GvGls~vnalS~~l~v~~~r~g-~~~~~~~~~G~~~~~l~~~~----~~~~~GT~ 165 (391)
T 1ei1_A 97 LHAGGK--FD----DNSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTG----ETEKTGTM 165 (391)
T ss_dssp TTEESC--SS----SSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEEE----ECSCCEEE
T ss_pred ccccCC--cC----CCcccccCCccccchHHHHHhcCeEEEEEEeCC-cEEEEEEcCCcccccceecc----CcCCCccE
Confidence 433333 21 011122468999999999999999999998754 4443333222 1111111 12368999
Q ss_pred EEEEecccc--c-ccccHHHHHHHHHHhcCCC-CcceEEe
Q 003458 249 IRLHLRDEA--G-EYLEESKLKELVKKYSEFI-NFPIYIW 284 (818)
Q Consensus 249 I~L~Lk~~~--~-e~l~~~~l~~lv~kys~fi-~~PI~l~ 284 (818)
|+..-...- . .-++...|.+.++.++=.- ..-|.+.
T Consensus 166 V~f~Pd~~~F~~~~~~e~~~l~~rlr~lA~lnpgv~i~l~ 205 (391)
T 1ei1_A 166 VRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLR 205 (391)
T ss_dssp EEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEEEEChhhhCCccccCHHHHHHHHHHhcccCCCcEEEEE
Confidence 998722211 1 1235678888888876432 3445554
No 35
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=98.34 E-value=6.4e-07 Score=92.39 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=91.7
Q ss_pred chhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHH-------HHH-HHHH
Q 003458 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL-------IKN-LGTI 172 (818)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL-------~~~-LgtI 172 (818)
+...++|||.||.|+... +. .-.|.|.++.+ ..|+|.|||.||+.+.. .+. |+..
T Consensus 36 l~~lv~ElvdNsiDea~~--------------g~--~~~I~V~i~~~-g~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~l 98 (220)
T 4duh_A 36 LHHMVFEVVDNAIDEALA--------------GH--CKEIIVTIHAD-NSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVL 98 (220)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------SC--CCEEEEEECTT-SCEEEEECSSCCCCSEETTTTEEHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHhc--------------CC--CCEEEEEEeCC-CcEEEEECCcCcccccccccCcchhhheeeec
Confidence 367889999999999742 11 23577777654 58999999999998753 122 3333
Q ss_pred hccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCC-C--ceEEEeCCCCCCCCCCcEE
Q 003458 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD-G--AFAISEDTWNEPLGRGTEI 249 (818)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~-~--~f~i~~~~~~~~~~~GT~I 249 (818)
-.+|+ |-. ..-...-|..|+|.-++=.++.+++|+++..+ ..|..+-..+ . ...+.. ....+||+|
T Consensus 99 hag~K--fd~----~~yk~SgGlhGvG~svvNAlS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~~g----~~~~~GT~V 167 (220)
T 4duh_A 99 HAGGK--FDD----NSYKVSGGLHGVGVSVVNALSQKLELVIQREG-KIHRQIYEHGVPQAPLAVTG----ETEKTGTMV 167 (220)
T ss_dssp TCSSC--CCT----TC--------CCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTEESSSCEEEE----ECSCCEEEE
T ss_pred ccCCC--cCC----CccccccCccceecchhcccccceEEEEEECC-EEEEEEecCCcCcCCceecc----ccCCCCcEE
Confidence 33332 210 11123569999999999999999999998765 3332222221 1 111111 234689999
Q ss_pred EEEecccc-c-c-cccHHHHHHHHHHhcCCCC--cceEEeec
Q 003458 250 RLHLRDEA-G-E-YLEESKLKELVKKYSEFIN--FPIYIWAS 286 (818)
Q Consensus 250 ~L~Lk~~~-~-e-~l~~~~l~~lv~kys~fi~--~PI~l~~~ 286 (818)
+..-...- . . -++.+.|.+.++.++ |++ ..|.++..
T Consensus 168 ~F~Pd~~~F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 208 (220)
T 4duh_A 168 RFWPSLETFTNVTEFEYEILAKRLRELS-FLNSGVSIRLRDK 208 (220)
T ss_dssp EEEECTTTCCSSCSCCHHHHHHHHHHHH-HHCTTSEEEEEET
T ss_pred EEEECHHHhCCcccCCHHHHHHHHHHHH-hcCCCCEEEEEcc
Confidence 98633221 0 1 235678888888887 554 45555543
No 36
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=98.31 E-value=1.1e-06 Score=97.90 Aligned_cols=149 Identities=16% Similarity=0.138 Sum_probs=89.3
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHH--------HHHHHHHHhc
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED--------LIKNLGTIAK 174 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~d--------L~~~LgtIa~ 174 (818)
..+.|||.||.||... + ...-.|.|.++.++..|+|.|||.||+.++ +.-.|+..-.
T Consensus 55 ~lv~EivdNsiDe~~~-------~--------g~~~~I~V~i~~~~~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lha 119 (400)
T 1zxm_A 55 KIFDEILVNAADNKQR-------D--------PKMSCIRVTIDPENNLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLT 119 (400)
T ss_dssp HHHHHHHHHHHHHHHH-------C--------TTCCEEEEEEETTTTEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSE
T ss_pred HHHHHHHhhHHhHHhh-------c--------CCCceEEEEEECCCCEEEEEECCCcccCccccccCccchhheeeeecc
Confidence 4689999999999731 1 112357777776668999999999999876 3333443333
Q ss_pred cCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeC-CCeeEEEEEcCC-CceEEEeCCCCCCCCCCcEEEEE
Q 003458 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQYVWESKAD-GAFAISEDTWNEPLGRGTEIRLH 252 (818)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~-~d~~~~W~s~~~-~~f~i~~~~~~~~~~~GT~I~L~ 252 (818)
+|+ |-. ..-.-.-|..|+|.-++=.++.+++|+++.. +...|...-..+ ..-.+..... ....+||+|+..
T Consensus 120 gsK--f~~----~~ykvSgGlhGvGlsvVnAlS~~l~v~v~~~~~g~~~~~~~~~G~~~~~~~~ig~-~~~~~GT~V~F~ 192 (400)
T 1zxm_A 120 SSN--YDD----DEKKVTGGRNGYGAKLCNIFSTKFTVETASREYKKMFKQTWMDNMGRAGEMELKP-FNGEDYTCITFQ 192 (400)
T ss_dssp ESC--CCG----GGCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEE-CCSCCEEEEEEE
T ss_pred cCC--CCC----CcccccCCccccceeeeEEeccceEEEEecCCCCcEEEEEEccCccccCcceecc-CCCCCccEEEEE
Confidence 333 211 1111256999999999999999999999874 334443332222 1111111100 113589999988
Q ss_pred ecccc---cccccHHH---HHHHHHHhc
Q 003458 253 LRDEA---GEYLEESK---LKELVKKYS 274 (818)
Q Consensus 253 Lk~~~---~e~l~~~~---l~~lv~kys 274 (818)
....- .+ ++.+. |.+.++.++
T Consensus 193 Pd~~iF~~~e-f~~~~~~~l~~rlrelA 219 (400)
T 1zxm_A 193 PDLSKFKMQS-LDKDIVALMVRRAYDIA 219 (400)
T ss_dssp ECGGGGTCSS-CCHHHHHHHHHHHHHHH
T ss_pred EChHHhCcee-ecHHHHHHHHHHHHHHH
Confidence 33321 12 24444 556666655
No 37
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=98.30 E-value=1.6e-06 Score=95.74 Aligned_cols=152 Identities=9% Similarity=0.103 Sum_probs=89.9
Q ss_pred chhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhH
Q 003458 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (818)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f 180 (818)
+...+.|||.||.||... + .--.|.|.++.++ .|+|+|||.||+. |+. | ..-.+|+ |
T Consensus 31 l~~~v~ElvdNsiDe~~~--------------g--~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~v--~-~lhagsK--f 87 (369)
T 3cwv_A 31 LHHLVYFLLDVAYEEARR--------------G--ECRDVVLEVGGDG-SIALFCTSRTVTA-ENL--V-RVATGAG--F 87 (369)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------T--CCSEEEEEECTTS-CEEEEEEESSCCH-HHH--H-HHHTTTT--G
T ss_pred HHHHHHHHHhhhHhHHhh--------------C--CCCEEEEEEeCCC-EEEEEECCCCcCH-hHe--e-eeecCCC--c
Confidence 356789999999999631 1 1236777776554 8999999999999 554 3 3322332 2
Q ss_pred HHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCce-----EEEeC-CCCCCCCCCcEEEEEec
Q 003458 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAF-----AISED-TWNEPLGRGTEIRLHLR 254 (818)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f-----~i~~~-~~~~~~~~GT~I~L~Lk 254 (818)
-. . ...+..+.-| |..|+=.++.+++|+|+..+ ..|...-.++ .- ...+. +.+....+||+|+..
T Consensus 88 ~~-~---~~~~~y~vsG-Gls~vnalSs~l~v~t~r~g-~~~~~~~~~G-~~~~~~~~~~~l~~~g~~~~~GT~V~f~-- 158 (369)
T 3cwv_A 88 LG-R---PPGDGWGWDS-MLVVSLALSSRYQVDIWADG-RQWRVMGEHG-HPQGEGAAVTPMEPMPVSAERGVRVHFV-- 158 (369)
T ss_dssp GG-S---SCCCSTTTTS-SHHHHHHTEEEEEEEEEETT-EEEEEEEETT-EECTTCEEESSCCCCSSCCSEEEEEEEE--
T ss_pred CC-C---cccccccccC-HHHHHHHhhceEEEEEEECC-CEEEEEEeCC-cccccccccCCceEecccCCCCCEEEEE--
Confidence 11 0 0001222225 87778888899999999754 4444433332 21 02211 112234789999987
Q ss_pred cccccc----ccHHHHHHHHHHhcCCC-CcceEEe
Q 003458 255 DEAGEY----LEESKLKELVKKYSEFI-NFPIYIW 284 (818)
Q Consensus 255 ~~~~e~----l~~~~l~~lv~kys~fi-~~PI~l~ 284 (818)
++..-| .+...|.+.++.++=.- ..-|.+.
T Consensus 159 Pd~~~F~~~~~e~~~l~~rl~~lA~lnpgv~i~l~ 193 (369)
T 3cwv_A 159 PDATIFEVLAFDRARLSRRCNELAALAPGLRVSFA 193 (369)
T ss_dssp ECTTTCSCCCCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred ECHHHhCCccccHHHHHHHHHHHcCcCCCcEEEEE
Confidence 222223 46788999999888322 2444443
No 38
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=98.27 E-value=9.9e-07 Score=91.36 Aligned_cols=157 Identities=19% Similarity=0.284 Sum_probs=93.2
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHH-------HHHHHHHHhc
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED-------LIKNLGTIAK 174 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~d-------L~~~LgtIa~ 174 (818)
...++|+|.||.|+... + ....|.|.++.+ ..|+|.|||.||+.++ +.-.|+..-.
T Consensus 42 ~~~v~Eiv~NaiD~~~~--------------g--~~~~I~V~i~~~-g~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lha 104 (226)
T 4emv_A 42 HHLVWEIVDNAVDEALS--------------G--FGDRIDVTINKD-GSLTVQDHGRGMPTGMHAMGIPTVEVIFTILHA 104 (226)
T ss_dssp HHHHHHHHHHHHHHHHT--------------T--CCSEEEEEECTT-SCEEEEECSSCCCCSBCGGGCBHHHHHHHCBC-
T ss_pred HHHHHHHHHHHHHHHhc--------------C--CCcEEEEEEeCC-CeEEEEEcCCCccccccccCceehheeEEeecc
Confidence 34678999999999641 1 123677777654 5899999999999887 3323433333
Q ss_pred cCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeE--EEEEcCC--CceE-EEeCCCCCCCCCCcEE
Q 003458 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQY--VWESKAD--GAFA-ISEDTWNEPLGRGTEI 249 (818)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~--~W~s~~~--~~f~-i~~~~~~~~~~~GT~I 249 (818)
+|+ |-. ..-...-|..|+|.-++=.++.+++|+++..+ ..| .|+..+. .... +... .....||+|
T Consensus 105 g~K--fd~----~~yk~SgGlhGvG~svvNALS~~l~v~v~r~g-~~~~q~f~~Gg~~~~~l~~ig~~---~~~~~GT~V 174 (226)
T 4emv_A 105 GGK--FGQ----GGYKTSGGLHGVGSSVVNALSSWLEVEITRDG-AVYKQRFENGGKPVTTLKKIGTA---LKSKTGTKV 174 (226)
T ss_dssp -------------------CGGGCCHHHHHHTEEEEEEEEEETT-EEEEEEEETTTEESSCSEEEEEC---CTTCCEEEE
T ss_pred cCc--cCc----cceEeccccccccchhhhhcccceEEEEEeCC-cEEEEEECCCCEEcCCceEeccc---CCCCCCeEE
Confidence 333 311 11123569999999999999999999998755 333 3432101 1112 2221 114689999
Q ss_pred EEEecccc--cccccHHHHHHHHHHhcCCC--CcceEEeec
Q 003458 250 RLHLRDEA--GEYLEESKLKELVKKYSEFI--NFPIYIWAS 286 (818)
Q Consensus 250 ~L~Lk~~~--~e~l~~~~l~~lv~kys~fi--~~PI~l~~~ 286 (818)
+..-...- ..-++.+.|.+.++.++ |+ ...|.+...
T Consensus 175 ~F~PD~~iF~~~~~~~~~l~~rlrelA-~ln~gv~i~l~de 214 (226)
T 4emv_A 175 TFMPDATIFSTTDFKYNTISERLNESA-FLLKNVTLSLTDK 214 (226)
T ss_dssp EEEECTTTCSCCCCCHHHHHHHHHHHH-HHHCSCEEEEEET
T ss_pred EEEECHHHcCCCCcCHHHHHHHHHHHh-hcCCCCEEEEEec
Confidence 98733221 11246788888888887 54 355666543
No 39
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=97.96 E-value=1e-05 Score=90.39 Aligned_cols=156 Identities=18% Similarity=0.269 Sum_probs=86.3
Q ss_pred chhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHH-------HHH-HHHH
Q 003458 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL-------IKN-LGTI 172 (818)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL-------~~~-LgtI 172 (818)
+...+.|+|.||.|+.-. + ..-.|.|.++.+ ..|+|+|||.||+.+.. .+. |+.+
T Consensus 51 ~~hlv~EivdNsiDea~a--------------g--~~~~I~V~i~~d-gsI~V~DnGrGIPv~~h~~~~~~~~e~i~t~l 113 (408)
T 3lnu_A 51 PNHLAQEVIDNSVDEALA--------------G--HAKQIEVTLYKD-GSCEVSDDGRGMPVDIHPEEKIPGVELILTRL 113 (408)
T ss_dssp THHHHHHHHHHHHHHHHT--------------T--SCCEEEEEECTT-SCEEEEECSSCCCCSBCTTTCSBHHHHHHHCC
T ss_pred cchhhHHHHHHHHHHhhc--------------C--CCceEEEEEeCC-CeEEEEEcCCCCCcccccccCCcchheEEEec
Confidence 467899999999998631 1 123577777654 58999999999998762 223 3333
Q ss_pred hccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeE--EEEEcCC--CceE-EEeCCCCCCCCCCc
Q 003458 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQY--VWESKAD--GAFA-ISEDTWNEPLGRGT 247 (818)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~--~W~s~~~--~~f~-i~~~~~~~~~~~GT 247 (818)
-.+|+ |-.. .-.-.-|..|+|.-++=.++.+++|+++..+ ..| .|+ .|. .... +... .....||
T Consensus 114 haggK--fd~~----~ykvSgGlhGvG~svVNALS~~l~v~v~rdG-k~~~q~f~-~G~~~~~l~~ig~~---~~~~~GT 182 (408)
T 3lnu_A 114 HAGGK--FNNR----NYTFSGGLHGVGVSVVNALSTKVELFIKREG-SEHRMEFR-DGNAASKLEVVGTV---GKKNTGT 182 (408)
T ss_dssp --------------------------CHHHHHHTEEEEEEEEEETT-EEEEEEEE-TTEECSCCEEEEEC---CTTCCEE
T ss_pred ccCCC--cCCC----ceeecCCccccccceehhccCeEEEEEEECC-EEEEEEEC-CCEECCCceEeccC---cCCCCCc
Confidence 33333 3111 1123468999999999999999999998765 333 343 221 1112 2121 1236899
Q ss_pred EEEEEecccc--cccccHHHHHHHHHHhcCCC-CcceEEe
Q 003458 248 EIRLHLRDEA--GEYLEESKLKELVKKYSEFI-NFPIYIW 284 (818)
Q Consensus 248 ~I~L~Lk~~~--~e~l~~~~l~~lv~kys~fi-~~PI~l~ 284 (818)
+|+..-...- ..-++.+.|...++.++=.. ..-|.+.
T Consensus 183 ~V~F~PD~~iF~~~~f~~~~l~~rlrelA~Ln~Gv~I~l~ 222 (408)
T 3lnu_A 183 RLRFWADPKYFDTPKFNVRALRHLLRAKAVLCPGLTVKLH 222 (408)
T ss_dssp EEEEEECGGGSSCSCCCHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred EEEEEECHHHhCCCCcCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 9998643221 11246788888888776322 2455554
No 40
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=97.81 E-value=3.4e-05 Score=78.30 Aligned_cols=141 Identities=21% Similarity=0.330 Sum_probs=82.8
Q ss_pred chhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhH
Q 003458 101 KDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAF 180 (818)
Q Consensus 101 ~~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f 180 (818)
+...++|||.||.|+.-. + ..-.|.|.++.+ ..|+|.|||.||+.+ ..+.|+...+
T Consensus 32 l~~~v~Elv~NsiD~~~a--------------g--~~~~I~V~i~~~-g~i~V~DnG~Gip~~-------~h~~~~~~~~ 87 (198)
T 3ttz_A 32 LHHLVWEIVDNSIDEALA--------------G--YANQIEVVIEKD-NWIKVTDNGRGIPVD-------IQEKMGRPAV 87 (198)
T ss_dssp HHHHHHHHHHHHHHHHHT--------------T--SCCEEEEEEEGG-GEEEEEECSSCCCCS-------BCTTTSSBHH
T ss_pred hHHHHHHHHHHHHhHHhc--------------C--CCcEEEEEEeCC-CeEEEEECCCCcccc-------ccCcCCCccc
Confidence 366789999999998531 1 123566666654 499999999999985 2344543321
Q ss_pred HHhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCC-CceEEEeCCCCCCCCCCcEEEEEecccccc
Q 003458 181 VEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKAD-GAFAISEDTWNEPLGRGTEIRLHLRDEAGE 259 (818)
Q Consensus 181 ~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~-~~f~i~~~~~~~~~~~GT~I~L~Lk~~~~e 259 (818)
+.+ |+ .-++=.++.+++|+|+..+ ..|..+-..+ ....+... +....+||+|+.. ++..-
T Consensus 88 -e~i-----------~t--~SvVNALS~~l~v~v~r~g-~~~~~~f~~G~~~~~l~~i--~~~~~~GT~V~F~--Pd~~i 148 (198)
T 3ttz_A 88 -EVI-----------LT--SSVVNALSQDLEVYVHRNE-TIYHQAYKKGVPQFDLKEV--GTTDKTGTVIRFK--ADGEI 148 (198)
T ss_dssp -HHH-----------HH--TCHHHHTEEEEEEEEEETT-EEEEEEEETTEESSCCEEE--EECSCCEEEEEEE--ECTTT
T ss_pred -ccc-----------ce--eEehhhhcCeEEEEEEECC-cEEEEEEeCCEECCCceec--cCCCCCCcEEEEE--ECHHH
Confidence 111 22 2223345689999998765 3343222222 11111111 1124689999987 33333
Q ss_pred c-----ccHHHHHHHHHHhcCCCC--cceEEee
Q 003458 260 Y-----LEESKLKELVKKYSEFIN--FPIYIWA 285 (818)
Q Consensus 260 ~-----l~~~~l~~lv~kys~fi~--~PI~l~~ 285 (818)
| .+...|.+.++.++ |++ ..|.+..
T Consensus 149 F~~~~~~~~~~l~~rlrelA-~ln~gv~i~l~d 180 (198)
T 3ttz_A 149 FTETTVYNYETLQQRIRELA-FLNKGIQITLRD 180 (198)
T ss_dssp CCSCCCCCHHHHHHHHHHHH-HHSTTCEEEEEE
T ss_pred hccCCccCHHHHHHHHHHHh-hcCCCCEEEEEe
Confidence 4 46788999999888 554 4555544
No 41
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=97.55 E-value=0.00013 Score=81.96 Aligned_cols=128 Identities=16% Similarity=0.224 Sum_probs=80.4
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH--------HHHHHhc
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK--------NLGTIAK 174 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~--------~LgtIa~ 174 (818)
..+.|+|.||+|+... ++ .--.|.|.++.++..|+|.|||.||+.+.... .|+.+-.
T Consensus 67 ~lv~EivdNaiDe~~~-------~g--------~~~~I~V~i~~d~~sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~Lha 131 (418)
T 1pvg_A 67 KIFDEILVNAADNKVR-------DP--------SMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLT 131 (418)
T ss_dssp HHHHHHHHHHHHHHHH-------CT--------TCCEEEEEEETTTTEEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSE
T ss_pred HHHHHHHhCHHHHHHh-------cC--------CCCEEEEEEECCCCEEEEEECCCcccCcccccCCcccceEEEEEEec
Confidence 3688999999999741 11 12367788877768999999999998664221 2444433
Q ss_pred cCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeC-CCeeE--EEEEcC---CCceEEEeCCCCCCCCCCcE
Q 003458 175 SGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKA---DGAFAISEDTWNEPLGRGTE 248 (818)
Q Consensus 175 Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~-~d~~~--~W~s~~---~~~f~i~~~~~~~~~~~GT~ 248 (818)
+|+ |- ++.-.-.-|..|||.-.+=.++.+++|+++.. +...| .|+... ... .+... ....+||+
T Consensus 132 GgK--fd----~~~ykvSGGLhGVG~SvVNALS~~l~V~v~r~rdGk~y~q~f~~G~~~~~~p-~i~~~---~~~~tGT~ 201 (418)
T 1pvg_A 132 SSN--YD----DDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPP-KITSY---KKGPSYTK 201 (418)
T ss_dssp ESC--CC----TTSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCC-EEEEC---CSSCCEEE
T ss_pred ccc--cC----CCceeccCCccceeeeeeeeccceEEEEEEECCCCcEEEEEEEcCCCccCCC-eeccc---CCCCCceE
Confidence 443 20 01112246999999988888999999999862 44434 454221 112 23321 12368999
Q ss_pred EEEEecc
Q 003458 249 IRLHLRD 255 (818)
Q Consensus 249 I~L~Lk~ 255 (818)
|+..-..
T Consensus 202 V~F~PD~ 208 (418)
T 1pvg_A 202 VTFKPDL 208 (418)
T ss_dssp EEEEECG
T ss_pred EEEEECh
Confidence 9987543
No 42
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=97.13 E-value=0.0003 Score=65.74 Aligned_cols=84 Identities=21% Similarity=0.267 Sum_probs=50.0
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..|.|||.||..+... . .....+.|.+..+.+.-.|+|.|||.||+ ++.+ +.....+
T Consensus 42 ~il~~l~~Nai~h~~~-------~------~~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~----~~~~~~~---- 98 (145)
T 1th8_A 42 TVVSEAVTNAIIHGYN-------N------DPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEE----ARQPLFT---- 98 (145)
T ss_dssp HHHHHHHHHHHHTTST-------T------CTTSEEEEEEEEETTEEEEEEEECSSCCS--CHHH----HTCCC------
T ss_pred HHHHHHHHHHHHHhcC-------C------CCCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHH----hhccccc----
Confidence 3678999999876521 0 11234556665655556799999999999 4433 2221110
Q ss_pred hhhhcCCCCccccccccceeeeeeccEEEEEEe
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISK 215 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk 215 (818)
.. ...+..|+|++-+-.+++++.+.|.
T Consensus 99 ----~~--~~~~~~GlGL~iv~~~~~~i~~~~~ 125 (145)
T 1th8_A 99 ----TK--PELERSGMGFTIMENFMDEVIVESE 125 (145)
T ss_dssp -----------CCCSCHHHHHHHHSSEEEEEEE
T ss_pred ----CC--CCCCCCcchHHHHHHHHheEEEEeC
Confidence 00 1124579999888777775555543
No 43
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=97.13 E-value=0.00021 Score=72.82 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=35.1
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~ 167 (818)
.+|.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+.+.+
T Consensus 158 ~il~nLl~NA~~~~~----------------~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 206 (268)
T 4ew8_A 158 QTLDHLVENALRQTP----------------PGGRVTLSARRALGEVRLDVSDTGRGVPFHVQAH 206 (268)
T ss_dssp HHHHHHHHHHHHHSC----------------TTCEEEEEEEECSSEEEEEEEESSCCCCHHHHTT
T ss_pred HHHHHHHHHHHHhCC----------------CCCEEEEEEEecCCEEEEEEEcCCCCCCHHHHHH
Confidence 467888899888752 1234556655555556799999999999987654
No 44
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=97.06 E-value=0.00025 Score=69.09 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=35.5
Q ss_pred HHHHhhhcHHHHHHH---HHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH
Q 003458 104 FLRELISNASDALDK---IRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 104 fLRELIqNA~DA~~k---~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~ 167 (818)
+|.+||.||..+... .|... . . .....+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 51 il~nLl~NAik~~~~~~~~~~~~--~-~----~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 110 (189)
T 1i58_A 51 PLLHLLRNAIDHGIEPKEERIAK--G-K----PPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR 110 (189)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHH--T-S----CSSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccc--c-C----CCCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhh
Confidence 378999999998520 00000 0 0 11233455555555556799999999999998743
No 45
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=97.04 E-value=0.00017 Score=67.24 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=34.5
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~ 167 (818)
..|.+||.||..+.. ..+.|.+..+.+.-.|+|.|||.||+.+++..
T Consensus 47 ~il~nLl~NAi~~~~------------------~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~ 93 (152)
T 1id0_A 47 EVMGNVLDNACKYCL------------------EFVEISARQTDEHLYIVVEDDGPGIPLSKREV 93 (152)
T ss_dssp HHHHHHHHHHHHHCS------------------SEEEEEEEECSSCEEEEEEESSSCCCGGGTTG
T ss_pred HHHHHHHHHHHHhCc------------------CeEEEEEEecCCEEEEEEEeCCCCcCHHHHHH
Confidence 356789999988742 13456665555566899999999999887654
No 46
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=97.02 E-value=0.00035 Score=65.16 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=43.5
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHh
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~ 183 (818)
.|.+||.||..+.. ...+.|.+..+.+.-.|+|.|||.||+.+++.+.+..-.+ +.
T Consensus 50 il~nLl~NA~~~~~-----------------~~~I~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~-~~------ 105 (150)
T 1ysr_A 50 AVDNAIANAVKHGG-----------------ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSR-GS------ 105 (150)
T ss_dssp HHHHHHHHHHHTTC-----------------CSEEEEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC----------
T ss_pred HHHHHHHHHHhcCC-----------------CcEEEEEEEecCCEEEEEEEECCCCCCHHHHHHHhccccc-CC------
Confidence 56789999988631 1245566655655667999999999999988764421111 00
Q ss_pred hhhcCCCCccccccccceeeeeec
Q 003458 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (818)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~F~Va 207 (818)
...-+..|+|++-+-.++
T Consensus 106 ------~~~~~g~GlGL~i~~~~~ 123 (150)
T 1ysr_A 106 ------TASHSGSGLGLALVAQQA 123 (150)
T ss_dssp --------------CCCHHHHHHH
T ss_pred ------CCCCCCCCcCHHHHHHHH
Confidence 011255789987765553
No 47
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=97.02 E-value=0.00029 Score=70.32 Aligned_cols=74 Identities=26% Similarity=0.427 Sum_probs=47.5
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..|.+||.||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++...+ ....+
T Consensus 126 ~il~nLl~NA~~~~~----------------~~~~i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if----~~~~~---- 181 (244)
T 3d36_A 126 QCLLNVMKNAIEAMP----------------NGGTLQVYVSIDNGRVLIRIADTGVGMTKEQLERLG----EPYFT---- 181 (244)
T ss_dssp HHHHHHHHHHHHTCT----------------TCEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHTT----STTCC----
T ss_pred HHHHHHHHHHHHhcc----------------CCCeEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHh----ccccc----
Confidence 356788888887652 123456666666666679999999999998876432 11110
Q ss_pred hhhhcCCCCccccccccceeeeeec
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVA 207 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~Va 207 (818)
..-.+..|+|++.|-.++
T Consensus 182 -------~~~~~g~GlGL~i~~~i~ 199 (244)
T 3d36_A 182 -------TKGVKGTGLGMMVVYRII 199 (244)
T ss_dssp -------SSGGGCCSCHHHHHHHHH
T ss_pred -------CCCCCCcchhHHHHHHHH
Confidence 011245799998775554
No 48
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=97.02 E-value=0.00053 Score=75.37 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=62.2
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..|.+||.||+.|...- .... ...+.+.|.+..+.+.-.|+|.|+|.||+.+++...|.. ..++....
T Consensus 234 ~il~NLl~NAik~~~~~-------~~~~--~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~-f~~~~~~~-- 301 (394)
T 2btz_A 234 HMLFELFKNAMRATVES-------HESS--LILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSY-MYSTAPTP-- 301 (394)
T ss_dssp HHHHHHHHHHHHHHHHT-------TTTC--SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCT-TTTCCC----
T ss_pred HHHHHHHHHHHHHhhhc-------cccC--CCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcc-cccCCCCC--
Confidence 36778999999998630 0000 012345666655555567999999999999998764421 11111100
Q ss_pred hhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk~ 255 (818)
.. .......+.+|+|++-|-.+++ .. +|...+... .+.||+++|+|..
T Consensus 302 ~~--~~~~~~~~G~GLGL~i~~~i~~-------~~-----------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2btz_A 302 QP--GTGGTPLAGFGYGLPISRLYAK-------YF-----------QGDLQLFSM-----EGFGTDAVIYLKA 349 (394)
T ss_dssp --------------CCHHHHHHHHHH-------HT-----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred Cc--ccCCCCCCCccCCHHHHHHHHH-------Hh-----------CCEEEEEec-----CCCceEEEEEecC
Confidence 00 0012235678999977655542 11 234444332 2569999999864
No 49
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=96.97 E-value=0.00018 Score=70.80 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=44.7
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..|.+||+||..+.. ....|.|.+.... |+|.|||.||+.+++...+..- .++.
T Consensus 120 ~il~nLl~NAi~~~~------------------~~~~i~i~~~~~~--i~V~D~G~Gi~~~~~~~if~~f-~~~~----- 173 (222)
T 3jz3_A 120 LLVRNLLDNAVRYSP------------------QGSVVDVTLNADN--FIVRDNGPGVTPEALARIGERF-YRPP----- 173 (222)
T ss_dssp HHHHHHHHHHHHTCC------------------TTCEEEEEECSSE--EEEECSCC------------------------
T ss_pred HHHHHHHHHHHHcCC------------------CCCeEEEEEccCe--EEEEECCCCCCHHHHHHHHhhh-ccCC-----
Confidence 367789999987642 1124666554433 9999999999999877544211 1110
Q ss_pred hhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk~ 255 (818)
....+..|+|++-|-.++.. + +|.+.+.. ..+.||+|++++..
T Consensus 174 -------~~~~~g~GlGL~i~~~i~~~------~------------gG~i~i~s-----~~~~Gt~v~~~~P~ 216 (222)
T 3jz3_A 174 -------GQTATGSGLGLSIVQRIAKL------H------------GMNVEFGN-----AEQGGFEAKVSWLE 216 (222)
T ss_dssp ---------------CTHHHHHHHHHH------T------------TCEEECCB-----CTTSSBEEEEECCC
T ss_pred -------CCCCCcccccHHHHHHHHHH------c------------CCEEEEEc-----CCCCcEEEEEeecC
Confidence 11224679998766554321 1 12333332 23679999998764
No 50
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=96.91 E-value=0.00051 Score=75.59 Aligned_cols=117 Identities=24% Similarity=0.252 Sum_probs=66.7
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..|.+||.||..|...-.- . . ...+.+.|.+..+.+.-.|+|.|+|.||+.+++.+.|.. ..++...-
T Consensus 233 ~il~NLl~NAik~~~~~~~----~-~----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~-f~~~~~~~-- 300 (394)
T 2e0a_A 233 HMLFELFKNAMRATVEHQE----N-Q----PSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSY-TYSTAPTP-- 300 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTT----T-S----SSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTST-TCCSSCCC--
T ss_pred HHHHHHHHHHHHHHHhccc----c-c----CCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCc-CccCCCCC--
Confidence 4677999999999863100 0 0 112345666655555567999999999999988764421 11111100
Q ss_pred hhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk~ 255 (818)
.+. .......+.+|+|++-|-.+++ .+ +|...+... .+.||+++|+|..
T Consensus 301 ~~~-~~~~~~~~G~GLGL~i~~~i~~------~~------------gG~i~v~s~-----~g~Gt~f~i~lP~ 349 (394)
T 2e0a_A 301 VMD-NSRNAPLAGFGYGLPISRLYAK------YF------------QGDLNLYSL-----SGYGTDAIIYLKA 349 (394)
T ss_dssp -------CCCSSCSSCHHHHHHHHHH------HT------------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred CcC-cCCCCCCCCcccCHHHHHHHHH------Hh------------CCEEEEEec-----CCccEEEEEEeCC
Confidence 000 0012245778999977655542 11 234444332 2569999999864
No 51
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=96.91 E-value=0.00058 Score=75.49 Aligned_cols=117 Identities=19% Similarity=0.255 Sum_probs=66.0
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..|.+||.||+.|...-.- . . ...+.+.|.+..+.+.-.|+|.|||.||+.+++.+.|.. ..++... .
T Consensus 246 ~il~NLl~NAik~t~~~~~----~-~----~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~-f~~~~~~--~ 313 (407)
T 2q8g_A 246 HMVFELFKNAMRATMEHHA----N-R----GVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNY-MYSTAPR--P 313 (407)
T ss_dssp HHHHHHHHHHHHHHHHHST----T-T----CCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCT-TTTCCCC--C
T ss_pred HHHHHHHHHHHHHHhhccc----c-C----CCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCc-cccCCCC--C
Confidence 3577999999999863100 0 0 112345566655555567999999999999988653321 1111100 0
Q ss_pred hhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk~ 255 (818)
.. +.......|.+|+|++-|-.+++ .. +|.+.+... .+.||+++|+|..
T Consensus 314 ~~-~~~~~~~~~G~GLGL~Ivr~i~~-------~~-----------gG~i~v~s~-----~g~Gt~f~i~LP~ 362 (407)
T 2q8g_A 314 RV-ETSRAVPLAGFGYGLPISRLYAQ-------YF-----------QGDLKLYSL-----EGYGTDAVIYIKA 362 (407)
T ss_dssp CS-SCCSCCCSSCTTCHHHHHHHHHH-------HT-----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred Cc-cccCCCCCCCcCCCHHHHHHHHH-------Hh-----------CCEEEEEEc-----CCCceEEEEEECC
Confidence 00 00012345788999976655532 11 233444332 2569999999864
No 52
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=96.87 E-value=0.00095 Score=65.91 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=30.2
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL 165 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL 165 (818)
.++||+.||..+.. ...+.|.+..+.+.-.|+|.|||.||+.+.+
T Consensus 134 il~nll~Na~k~~~-----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 178 (218)
T 3ehh_A 134 CLKEAVTNVVKHSQ-----------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 178 (218)
T ss_dssp HHHHHHHHHHHHTC-----------------CSEEEEEEEEETTEEEEEEEESSCCCC----
T ss_pred HHHHHHHHHHHhCC-----------------CCEEEEEEEEeCCEEEEEEEECCcCCCCCCC
Confidence 57888888876531 1245666666666668999999999998765
No 53
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=96.78 E-value=0.0005 Score=76.39 Aligned_cols=118 Identities=20% Similarity=0.233 Sum_probs=63.8
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVE 182 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~ 182 (818)
..|.+||.||+.|...-.- +.. ...+.+.|.+..+.+.-.|+|.|||.||+.+++.+.|.. ..++... .
T Consensus 256 ~vl~NLl~NAik~~~~~~~----~~~----~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~-f~~~~~~--~ 324 (419)
T 1y8o_A 256 HMLFELFKNSMRATVELYE----DRK----EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNY-MYSTAPR--P 324 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHT----TCS----SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCT-TTC-------
T ss_pred HHHHHHHHHHHHHHHhhcc----ccC----CCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCc-ccccCCC--C
Confidence 3577999999999864210 000 012345666655555567999999999999988753321 1111100 0
Q ss_pred hhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEecc
Q 003458 183 KMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLRD 255 (818)
Q Consensus 183 ~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk~ 255 (818)
.+. .......+.+|+|++-|-.+++ .. +|...+... .+.||+++|+|..
T Consensus 325 ~~~-~~~~~~~~G~GLGL~I~k~iv~-------~~-----------gG~I~v~s~-----~g~Gt~f~i~LP~ 373 (419)
T 1y8o_A 325 SLE-PTRAAPLAGFGYGLPISRLYAR-------YF-----------QGDLKLYSM-----EGVGTDAVIYLKA 373 (419)
T ss_dssp ---------CC--CTTHHHHHHHHHH-------HT-----------TCEEEEEEE-----TTTEEEEEEEEES
T ss_pred Ccc-ccCCCCcCCeecCHHHHHHHHH-------Hh-----------CCEEEEEec-----CCCCEEEEEEecC
Confidence 000 0012235678999976655542 11 234444332 2569999999864
No 54
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=96.77 E-value=0.00019 Score=69.11 Aligned_cols=102 Identities=25% Similarity=0.365 Sum_probs=57.8
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCC--cEEEEEeCCCCCCHHHHHHHHHHHhccCchhHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEK--KILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFV 181 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~--~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~ 181 (818)
+|.+||.||..+.. ....+.|.|.....+ -.|+|.|||.||+.+++...+.. ..++..
T Consensus 47 il~nLl~NAi~~~~----------------~~~~i~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~-~~~~~~--- 106 (177)
T 3sl2_A 47 VLDNIISNALKYSP----------------EGGHVTFSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDR-FYRVDK--- 106 (177)
T ss_dssp HHHHHHHHHHHTCC----------------TTCCEEEEEEEETTTTEEEEEEECCSSCCCTTTTTTTTST-TCCCC----
T ss_pred HHHHHHHHHHHhCC----------------CCCeEEEEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhh-hccCCC---
Confidence 67789999998742 123456666444433 46899999999998876542211 111110
Q ss_pred HhhhhcCCCCccccccccceeeeeeccEEEEEEeeCCCeeEEEEEcCCCceEEEeCCCCCCCCCCcEEEEEec
Q 003458 182 EKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLR 254 (818)
Q Consensus 182 ~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~~d~~~~W~s~~~~~f~i~~~~~~~~~~~GT~I~L~Lk 254 (818)
......+..|+|++.+-.++.. . +|.+.+... ...||++++.|.
T Consensus 107 ------~~~~~~~g~GlGL~iv~~~~~~------~------------~G~i~i~~~-----~~~Gt~~~i~lP 150 (177)
T 3sl2_A 107 ------ARTRKLGGTGLGLAIAKEMVQA------H------------GGDIWADSI-----EGKGTTITFTLP 150 (177)
T ss_dssp -----------CCCCCCHHHHHHHHHHH------T------------TCCEEEEEE-----TTTEEEEEEEEE
T ss_pred ------CCCCCCCCCCcCHHHHHHHHHH------c------------CCEEEEEec-----CCCCeEEEEEEe
Confidence 0112235789998866554321 1 223444432 245899888875
No 55
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=96.59 E-value=0.00056 Score=74.93 Aligned_cols=58 Identities=29% Similarity=0.354 Sum_probs=39.1
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~ 167 (818)
...|.+||.||..|...- ... +....+.+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 240 ~~il~NLl~NAik~~~~~------~~~--~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~ 297 (388)
T 1gkz_A 240 DYILPELLKNAMRATMES------HLD--TPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDR 297 (388)
T ss_dssp HHHHHHHHHHHHHHHHHT------CTT--CTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTT
T ss_pred HHHHHHHHHHHHHHhhcc------ccC--CCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHH
Confidence 357889999999998631 000 0011235566665555556799999999999988764
No 56
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=96.48 E-value=0.0032 Score=69.20 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=34.9
Q ss_pred HHHhhhcHHHHH----HHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH
Q 003458 105 LRELISNASDAL----DKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 105 LRELIqNA~DA~----~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~ 167 (818)
|.+||.||.|+. +.|+. . |......+.|++..+.+.-.|+|.|||.||+.+.+.+
T Consensus 111 l~nLl~NAi~h~~e~~~~r~~-~-------gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~ 169 (379)
T 1b3q_A 111 LLHLLRNAIDHGIEPKEERIA-K-------GKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIR 169 (379)
T ss_dssp HHHHHHHHHHHTSCCHHHHHH-T-------TCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHh-c-------CCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHH
Confidence 899999999996 11111 0 1012223344444444445689999999999998743
No 57
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=96.44 E-value=0.0008 Score=63.60 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=45.9
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHHHHHHHhccCchhHHHh
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEK 183 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~~LgtIa~Sg~~~f~~~ 183 (818)
.|.+||+||..+. ...+.|.+..+.+.-.|+|.|||.||+.+++...+.. ..++
T Consensus 51 il~nll~NAik~~------------------~~~I~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~-f~~~------- 104 (161)
T 1bxd_A 51 AVANMVVNAARYG------------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQP-FVRG------- 104 (161)
T ss_dssp HHHHHHHHHHTTC------------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGGGCSSCC-CCCC-------
T ss_pred HHHHHHHHHHhhc------------------CCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCC-ceeC-------
Confidence 5678999997642 1245666666665667999999999998876532211 0111
Q ss_pred hhhcCCCCccccccccceeeeeec
Q 003458 184 MQTSGDLNLIGQFGVGFYSVYLVA 207 (818)
Q Consensus 184 l~~~~~~~~IGqFGIGF~S~F~Va 207 (818)
......+..|+|++-+-.++
T Consensus 105 ----~~~~~~~g~GlGL~i~~~~~ 124 (161)
T 1bxd_A 105 ----DSARTISGTGLGLAIVQRIV 124 (161)
T ss_dssp ----SCCCCCCCCSCCCCTTHHHH
T ss_pred ----CCCCCCCCcccCHHHHHHHH
Confidence 11111256899998765554
No 58
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=96.35 E-value=0.0017 Score=60.50 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=28.4
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCC----------CcEEEEEeCCCCCCHHHHHHHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE----------KKILSIRDRGIGMTKEDLIKNL 169 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~----------~~~L~I~DNGiGMT~~dL~~~L 169 (818)
+|.+||.||..+... ....+.|.+..+.. .-.|+|.|||.||+.+++...+
T Consensus 52 il~nLl~NAik~~~~---------------~~~~I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf 112 (160)
T 1r62_A 52 VLLNIVRNALQALGP---------------EGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLF 112 (160)
T ss_dssp HHHHHHHHHHHHHGG---------------GCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC---------
T ss_pred HHHHHHHHHHHHhhc---------------cCCeEEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhh
Confidence 567899999988631 02234555544433 4568999999999999876543
No 59
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=96.31 E-value=0.0011 Score=61.27 Aligned_cols=48 Identities=27% Similarity=0.250 Sum_probs=34.2
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~ 167 (818)
.|.+||+||..+.. ....+.|.+..+.+.-.|+|.|||.||+.+++.+
T Consensus 51 il~nll~NAi~~~~----------------~~~~I~i~~~~~~~~~~i~i~D~G~g~~~~~~~~ 98 (152)
T 3a0y_A 51 VLINLVQNAIEATG----------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 98 (152)
T ss_dssp HHHHHHHHHHHHHC----------------TTCEEEEEEEECSSEEEEEEEEESCCCCGGGTTG
T ss_pred HHHHHHHHHHHhcC----------------CCCEEEEEEEecCCEEEEEEEeCCCCcCHHHHHh
Confidence 56789999998862 1234455555554556799999999999887754
No 60
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0077 Score=75.30 Aligned_cols=143 Identities=16% Similarity=0.271 Sum_probs=78.8
Q ss_pred HHHHhhhcHHH-HHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHH----------HHHHHHHHH
Q 003458 104 FLRELISNASD-ALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKE----------DLIKNLGTI 172 (818)
Q Consensus 104 fLRELIqNA~D-A~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~----------dL~~~LgtI 172 (818)
.+.|.|.||+| |++ +. ..-.|.|.++.+++.|+|+|||-||+-+ +++ |+++
T Consensus 63 l~~EildNsiDea~a--------g~--------~~~~I~V~i~~~d~sisV~DnGRGIPvd~h~~~~~~~~Evv--~t~L 124 (1177)
T 4gfh_A 63 IFDEILVNAADNKVR--------DP--------SMKRIDVNIHAEEHTIEVKNDGKGIPIEIHNKENIYIPEMI--FGHL 124 (1177)
T ss_dssp HHHHHHHHHHHHHHH--------CT--------TCCEEEEEEETTTTEEEEEECSSCCCCSBCTTTCSBHHHHH--HHSS
T ss_pred EeeEEEEChHhHHhh--------CC--------CCCeEEEEEECCCCEEEEEecCCcccccccCCCCCEeeeee--cccc
Confidence 56799999999 443 11 1126888888788999999999999743 222 3333
Q ss_pred hccCchhHHHhhhhcCCCCccccccccceeeeeeccEEEEEEeeC-CCeeE--EEEEcCC--CceEEEeCCCCCCCCCCc
Q 003458 173 AKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHN-DDKQY--VWESKAD--GAFAISEDTWNEPLGRGT 247 (818)
Q Consensus 173 a~Sg~~~f~~~l~~~~~~~~IGqFGIGF~S~F~VadkV~V~Sk~~-~d~~~--~W~s~~~--~~f~i~~~~~~~~~~~GT 247 (818)
-.+|+ | .++.-.-.-|.-|||.--|=.++.++.|.+... +...| .|+.... +.-.+... .....||
T Consensus 125 hAGgK--F----d~~~ykvSGGLHGVG~svVNALS~~~~vev~~~r~Gk~y~q~f~~g~~~~~~~~i~~~---~~~~tGT 195 (1177)
T 4gfh_A 125 LTSSN--Y----DDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQKYVQKWENNMSICHPPKITSY---KKGPSYT 195 (1177)
T ss_dssp SEESC--C----CCSSCCCCSCCSSCHHHHHHHTEEEEEEEEEETTTTEEEEEEEETTTTEECCCEEEEC---CSSCCCE
T ss_pred ccccC--c----CCCCCeEeccCCChhhhHHhhcCCceEEEEEEEcCCEEEEEEEECCcccCCCCeeecC---CCCCCce
Confidence 33333 2 001112245999999865556677766666432 33333 3432211 11122221 2235799
Q ss_pred EEEEEecccc--cccccHHHHHHHHHHh
Q 003458 248 EIRLHLRDEA--GEYLEESKLKELVKKY 273 (818)
Q Consensus 248 ~I~L~Lk~~~--~e~l~~~~l~~lv~ky 273 (818)
+|+..-...- ..-++.+.+..+.++.
T Consensus 196 ~V~F~PD~~iF~~~~~~~d~l~~~~r~~ 223 (1177)
T 4gfh_A 196 KVTFKPDLTRFGMKELDNDILGVMRRRV 223 (1177)
T ss_dssp EEEEEECHHHHTCSSCCHHHHHHHHHHH
T ss_pred EEEEEeCHHhcCCcEeCHHHHHHHHHHH
Confidence 9987643221 1123555555554443
No 61
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=95.71 E-value=0.0041 Score=63.14 Aligned_cols=52 Identities=15% Similarity=0.297 Sum_probs=32.8
Q ss_pred hHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH
Q 003458 103 IFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 103 ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~ 167 (818)
..|..||+||..+... . .....+.|.+....+.-.|+|.|||.||+.+++..
T Consensus 141 ~il~NLl~NAik~~~~---------~----~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~ 192 (258)
T 2c2a_A 141 QVLLNLLNNGVKYSKK---------D----APDKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDR 192 (258)
T ss_dssp HHHHHHHHHHHHTCCT---------T----CTTCEEEEEEEEETTEEEEEEEECSSCCCGGGTTG
T ss_pred HHHHHHHHHHHhcCcC---------C----CCceeEEEEEecCCCeEEEEEEecCCCCCHHHHHh
Confidence 3567889999876420 0 01122344444444445699999999999988754
No 62
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=95.33 E-value=0.019 Score=52.42 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=32.6
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDL 165 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL 165 (818)
.++|||+||..+.. ...+.|.+..+.+.-.|+|.|||.||+.+++
T Consensus 44 il~nll~Na~k~~~-----------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~ 88 (128)
T 3ehg_A 44 CLKEAVTNVVKHSQ-----------------AKTCRVDIQQLWKEVVITVSDDGTFKGEENS 88 (128)
T ss_dssp HHHHHHHHHHHHTC-----------------CSEEEEEEEEETTEEEEEEEESSCCCSCSSC
T ss_pred HHHHHHHHHHhcCC-----------------CcEEEEEEEEeCCEEEEEEEECCcCcCcccC
Confidence 67899999986531 1245666666666667999999999986543
No 63
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=94.48 E-value=0.019 Score=51.51 Aligned_cols=43 Identities=28% Similarity=0.505 Sum_probs=31.8
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED 164 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~d 164 (818)
.++||++||..+.. ...+.|.+..+.+ -.|+|+|||.||+.+.
T Consensus 43 il~nll~Na~k~~~-----------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 85 (124)
T 3zxq_A 43 VLREAVSNAVRHAN-----------------ATSLAINVSVEDD-VRVEVVDDGVGISGDI 85 (124)
T ss_dssp HHHHHHHHHHTCTT-----------------CCEEEEEEEEEEE-EEEEEEECCCSSCGGG
T ss_pred HHHHHHHHHHHhCC-----------------CCEEEEEEEeCCC-EEEEEEECCCCCCccc
Confidence 67889999976531 1245666666666 7899999999998765
No 64
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=93.95 E-value=0.017 Score=52.21 Aligned_cols=43 Identities=30% Similarity=0.506 Sum_probs=31.8
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKED 164 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~d 164 (818)
.++|||+||..+.. ...+.|++..+.+ -.|+|.|||.||+.+.
T Consensus 47 il~nll~NA~k~~~-----------------~~~i~i~~~~~~~-~~i~v~D~G~gi~~~~ 89 (129)
T 3zxo_A 47 VVREAVSNAVRHAA-----------------ASTLTVRVKVDDD-LCIEVTDNGRGMPDEF 89 (129)
T ss_dssp HHHHHHHHCCCCSS-----------------CCEEEEEEEESSE-EEEEEEECCCCCTTTT
T ss_pred HHHHHHHHHHHhCC-----------------CceEEEEEEEcCC-EEEEEecCCCCCCccc
Confidence 67899999987641 1345666666666 7799999999998654
No 65
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=93.73 E-value=0.032 Score=58.49 Aligned_cols=48 Identities=27% Similarity=0.250 Sum_probs=35.1
Q ss_pred HHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCCCCHHHHHH
Q 003458 104 FLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIGMTKEDLIK 167 (818)
Q Consensus 104 fLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiGMT~~dL~~ 167 (818)
.|.+||.||..+.. ....+.|.+..+.+.-.|+|.|||+||+.+.+.+
T Consensus 248 vl~nLl~NA~k~~~----------------~~~~i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~ 295 (349)
T 3a0r_A 248 VLINLVQNAIEATG----------------ENGKIKITSEDMYTKVRVSVWNSGPPIPEELKEK 295 (349)
T ss_dssp HHHHHHTHHHHTTC----------------TTCCEEEEEEEETTEEEEEEEEESCCCCGGGGTT
T ss_pred HHHHHHHHHHHhcc----------------CCCEEEEEEEecCCEEEEEEEECCCCCChHHHhh
Confidence 57888899888751 1234566666665666799999999999887643
No 66
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=84.30 E-value=0.75 Score=46.84 Aligned_cols=45 Identities=13% Similarity=0.090 Sum_probs=29.3
Q ss_pred HHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCCCcEEEEEeCCCC--CCHHHH
Q 003458 105 LRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKEKKILSIRDRGIG--MTKEDL 165 (818)
Q Consensus 105 LRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~~~~L~I~DNGiG--MT~~dL 165 (818)
+.=||+||.+|.. ....+.|.+....+...|+|.|+|.| +..+.+
T Consensus 151 l~NLl~NA~~a~~----------------~gg~I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~ 197 (247)
T 4fpp_A 151 VLNIAQIAASALP----------------AGGVATVKGVAADGRFSIIADAKGPRARLRPEVL 197 (247)
T ss_dssp HHHHHHHHHTTCT----------------TCCEEEEEEEEETTEEEEEEEEESTTCCCCHHHH
T ss_pred HHHHHHHHHHhcC----------------CCCeEEEEEEEECCEEEEEEEEcCCCCCCCHHHH
Confidence 4457788877652 12345666666666677999999977 555433
No 67
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=77.72 E-value=2.9 Score=45.94 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=31.1
Q ss_pred hhHHHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEeCC-CcEEEEEeCCCCCCHH
Q 003458 102 DIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLDKE-KKILSIRDRGIGMTKE 163 (818)
Q Consensus 102 ~ifLRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d~~-~~~L~I~DNGiGMT~~ 163 (818)
...+.||+.||+.+.- +. .....+.|++..+.+ .-.|.|.|+|.|++..
T Consensus 299 ~l~v~El~~Nav~Ha~---------~~----~~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~ 348 (399)
T 3ke6_A 299 VHAISEFVENAVEHGY---------AT----DVSKGIVVAAALAGDGNVRASVIDRGQWKDHR 348 (399)
T ss_dssp HHHHHHHHHHHHHHBC---------CS----CCTTCEEEEEEECTTSEEEEEEEESCBC----
T ss_pred HHHHHHHHHHHHHhcc---------cC----CCCceEEEEEEEcCCCEEEEEEEECCCCCCCC
Confidence 4689999999998741 10 123456666666533 4579999999999864
No 68
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=63.48 E-value=2.9 Score=41.80 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=36.0
Q ss_pred HHHhhhcHHHHHHHHHHhhccCccccCCCCCCccEEEEEEe--CCCcEEEEEeCCCCCCHHHHHHHH
Q 003458 105 LRELISNASDALDKIRFLSLTDKEVLGEGDNTKLEIQIKLD--KEKKILSIRDRGIGMTKEDLIKNL 169 (818)
Q Consensus 105 LRELIqNA~DA~~k~r~~~l~~~~~~g~~~~~~~~I~I~~d--~~~~~L~I~DNGiGMT~~dL~~~L 169 (818)
+--||.||.+|+... . .+ .....+.|.|..+ .+.-.|.|.|+|.|++.+.+.+.|
T Consensus 110 lgnLi~na~~Ai~~~----~-~~-----~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if 166 (192)
T 1ixm_A 110 LAKLMRKLFHLFDQA----V-SR-----ESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIR 166 (192)
T ss_dssp HHHHHHHHHHHHHHH----B-CT-----TSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC---
T ss_pred HHHHHHHHHHHHHhh----h-cc-----CCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHH
Confidence 456999999998742 1 11 1234456666665 456789999999999987765433
Done!