BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003459
(818 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 8/235 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSF 67
LQ HSS+VN + R + + + +D V LW + +L +L+GH+S + V+F
Sbjct: 255 LQTLTGHSSSVNGVAF-RPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVWGVAF 311
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127
+A+ + T+KLW+ + ++TLTGH S+ V F P G+ AS S D +K+
Sbjct: 312 SPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 370
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ 187
W+ R + T GH+ V + F+PDG+ + S +D TVKLW+ G+LL H
Sbjct: 371 WN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSS 428
Query: 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 242
+ + F P + +A+ S D+TVK W+ +L+ + +S VR + F+PDG+T+
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTI 482
Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 125/235 (53%), Gaps = 8/235 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSF 67
LQ HSS+V + + + + +D V LW + +L +L+GH+S + V+F
Sbjct: 50 LQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVRGVAF 106
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127
+A+ + T+KLW+ ++++TLTGH S+ V F P G+ AS S D +K+
Sbjct: 107 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 165
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ 187
W+ R + T GH+ V + F+PDG+ + S +D TVKLW+ G+LL H
Sbjct: 166 WN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSS 223
Query: 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 242
++ + F P +A+ S D+TVK W+ +L+ + +S V + F PDG+T+
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTI 277
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 123/235 (52%), Gaps = 8/235 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSF 67
LQ HSS+V + + + + +D V LW + +L +L+GH+S + V+F
Sbjct: 132 LQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVWGVAF 188
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127
+A+ + T+KLW+ ++++TLTGH S+ V F P G+ AS S D +K+
Sbjct: 189 SPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 247
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ 187
W+ R + T GH+ VN + F PDG+ + S +D TVKLW+ G+LL H
Sbjct: 248 WN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSS 305
Query: 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 242
+ + F P +A+ S D+TVK W+ L G +S V + F+PDG+T+
Sbjct: 306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTG-HSSSVWGVAFSPDGQTI 359
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 126/240 (52%), Gaps = 8/240 (3%)
Query: 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGI 62
+ LQ HSS+V + + + + +D V LW + +L +L+GH+S +
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAF-SPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSV 388
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V+F +A+ + T+KLW+ ++++TLTGH S+ V F P + AS S D
Sbjct: 389 RGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDD 447
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+K+W+ R + T GH+ V + F+PDG+ + S +D TVKLW+ G+LL
Sbjct: 448 KTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT 505
Query: 183 CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 242
H ++ + F P +A+ S D+TVK W+ +L+ + +S V + F+PDG+T+
Sbjct: 506 GHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTI 564
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 7/206 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSF 67
LQ HSS+V + + + + +D V LW + +L +L+GH+S + V+F
Sbjct: 378 LQTLTGHSSSVRGVAF-SPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVWGVAF 434
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127
+ +A+ + T+KLW+ ++++TLTGH S+ V F P G+ AS S D +K+
Sbjct: 435 SPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 493
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ 187
W+ R + T GH+ V + F+PDG+ + S +D TVKLW+ G+LL H
Sbjct: 494 WN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSS 551
Query: 188 IQCIDFHPHEFLLATGSADRTVKFWD 213
+ + F P +A+ S+D+TVK W+
Sbjct: 552 VWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 103/188 (54%), Gaps = 4/188 (2%)
Query: 55 LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114
L H+S + V+F +A+ + T+KLW+ ++++TLTGH S+ V F P G+
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 115 FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174
AS S D +K+W+ R + T GH+ V + F+PDG+ + S +D TVKLW+
Sbjct: 71 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 128
Query: 175 GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234
G+LL H + + F P +A+ S D+TVK W+ +L+ + +S V +
Sbjct: 129 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 187
Query: 235 FNPDGRTL 242
F+PDG+T+
Sbjct: 188 FSPDGQTI 195
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 133/270 (49%), Gaps = 23/270 (8%)
Query: 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90
V+V+ ED + +W + +L GHT + +SFD S L+A+ +A TIKLWD +
Sbjct: 122 VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181
Query: 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150
+ +RT+ GH N SV P G+ S S D +K+W+++ C+ T+ GH V +R
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 241
Query: 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE------------- 197
DG + S D TV++W + + + + H ++CI + P
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSET 301
Query: 198 --------FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHE 248
FLL+ GS D+T+K WD+ T + + + VR + F+ G+ +L C +
Sbjct: 302 KKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 360
Query: 249 SLKVFSWEPIRCHDAVDVGWSRLSDLNVHE 278
+L+V+ ++ RC ++ ++ L+ H+
Sbjct: 361 TLRVWDYKNKRCMKTLNAHEHFVTSLDFHK 390
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%)
Query: 46 IGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
I +P +LSGH S + V F ++ + + TIK+WD E RTL GH +
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 154
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
+ F G+ AS S D +K+WD + CI T GH V+++ P+G +VS D
Sbjct: 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 214
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP 225
T+K+W++ G + F H ++ + + L+A+ S D+TV+ W + T E
Sbjct: 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 226 ETSGVRCLTFNPD 238
V C+++ P+
Sbjct: 275 HRHVVECISWAPE 287
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 20/202 (9%)
Query: 32 LVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91
+V+ D + +W + + + +GH + V + L+A+ + T+++W +
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 266
Query: 92 KIVRTLTGHRSNCISVDFHPF--------------------GEFFASGSLDTNLKIWDIR 131
+ L HR + + P G F SGS D +K+WD+
Sbjct: 267 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 132 KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCI 191
C+ T GH V + F G++++S +D T+++WD + + HE + +
Sbjct: 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 386
Query: 192 DFHPHEFLLATGSADRTVKFWD 213
DFH + TGS D+TVK W+
Sbjct: 387 DFHKTAPYVVTGSVDQTVKVWE 408
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 110/250 (44%), Gaps = 23/250 (9%)
Query: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87
S ++L + D + LW I ++ GH + SVS + + + + TIK+W+
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVN 147
++ V+T TGHR V + G AS S D +++W + K C + H V
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Query: 148 AIRFTPD--------------------GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ 187
I + P+ G +++SG D T+K+WD++ G L H+
Sbjct: 281 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 340
Query: 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-L 246
++ + FH + + + D+T++ WD + + + V L F+ ++ G +
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 400
Query: 247 HESLKVFSWE 256
+++KV WE
Sbjct: 401 DQTVKV--WE 408
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 3/159 (1%)
Query: 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156
L+GHRS V FHP S S D +K+WD T KGHT V I F G+
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 157 WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216
+ S D T+KLWD + + H+ + + P+ + + S D+T+K W+++T
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 217 FELIGSAGPETSGVRCLTFNPDGRTLL--CGLHESLKVF 253
+ + VR + N DG TL+ C ++++V+
Sbjct: 224 GYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVW 261
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86
K L++G D + +W + +++L GH + + V F S + + A T+++W
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131
D + + ++TL H S+DFH + +GS+D +K+W+ R
Sbjct: 366 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 4/159 (2%)
Query: 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLL 200
GH V + F P +VS ED T+K+WD G K H +Q I F LL
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 201 ATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR 259
A+ SAD T+K WD + FE I + V ++ P+G ++ + ++K++ +
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 260 CHDAV--DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296
C W R+ N +G L+ N V VWVV
Sbjct: 226 CVKTFTGHREWVRMVRPN-QDGTLIASCSNDQTVRVWVV 263
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 14/215 (6%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
+ H+STV C+ + K +V+G D + +W I + L GH + + V +D
Sbjct: 192 IHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 248
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128
V+ +GA +K+WD E + TL GH + S+ F G SGSLDT++++W
Sbjct: 249 GRRVV--SGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVW 304
Query: 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC---HE 185
D+ CIHT GH + + + +VSG D+TVK+WD+ G+ L + H+
Sbjct: 305 DVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ 362
Query: 186 GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220
+ C+ F+ + + T S D TVK WDL+T E I
Sbjct: 363 SAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFI 395
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 113/213 (53%), Gaps = 15/213 (7%)
Query: 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90
++++G D + +W I +L GHTS + + E V +G+ T+++WD+E
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIET 228
Query: 91 AKIVRTLTGHRS--NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA 148
+ + L GH + C+ D G SG+ D +K+WD + C+HT +GHT V +
Sbjct: 229 GQCLHVLMGHVAAVRCVQYD----GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 284
Query: 149 IRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT 208
++F DG VVSG D ++++WD+ G +H H+ ++ + +L +G+AD T
Sbjct: 285 LQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADST 340
Query: 209 VKFWDLETFELIGS-AGP--ETSGVRCLTFNPD 238
VK WD++T + + + GP S V CL FN +
Sbjct: 341 VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 373
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 8/189 (4%)
Query: 32 LVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91
+V+G +D+ + +W+ + +L GHT G+ S + ++ +G+ T+K+W+ E
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETG 189
Query: 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRF 151
+ + TL GH S + H + SGS D L++WDI C+H GH V +++
Sbjct: 190 ECIHTLYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247
Query: 152 TPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211
DGR VVSG D VK+WD LH + H ++ + F + +GS D +++
Sbjct: 248 --DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG--IHVVSGSLDTSIRV 303
Query: 212 WDLETFELI 220
WD+ET I
Sbjct: 304 WDVETGNCI 312
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 92/176 (52%), Gaps = 12/176 (6%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L + H + V C++ R +V+G D V +W + +L GHT+ + S+ FD
Sbjct: 232 LHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD 288
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128
+ V +G+ +I++WD+E + TLTGH+S ++ SG+ D+ +KIW
Sbjct: 289 G--IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIW 344
Query: 129 DIRKKGCIHTYKG---HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF 181
DI+ C+ T +G H V ++F + +V++ +D TVKLWDL G+ + +
Sbjct: 345 DIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNL 398
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 105/225 (46%), Gaps = 13/225 (5%)
Query: 39 HKVNL-WAIGKPNAILSLSGHTSG-IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96
H+++ W G+ + L GH I + F + ++ +G+ T+K+W K +RT
Sbjct: 97 HRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIV--SGSDDNTLKVWSAVTGKCLRT 154
Query: 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156
L GH S SGS D LK+W+ CIHT GHT V + +
Sbjct: 155 LVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--K 210
Query: 157 WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216
VVSG D T+++WD+ G+ LH H ++C+ + + +G+ D VK WD ET
Sbjct: 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPET 268
Query: 217 FELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
+ + T+ V L F DG ++ G L S++V+ E C
Sbjct: 269 ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNC 311
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 114 bits (284), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 93
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 153
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 154 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 214 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 250
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 182
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 183 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 242
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 243 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 302
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 303 TDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 7/257 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 92
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 153 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 212
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 213 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 272
Query: 239 GRTLLCGLHESLKVFSW 255
G+ ++ G ++L V+ W
Sbjct: 273 GKWIVSGSEDNL-VYIW 288
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 161 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 220
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 221 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 279
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 280 SEDNLVYIWNLQTKEIV 296
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 91
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 151
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 152 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 212 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 248
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 180
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 181 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 300
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 301 TDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 7/257 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 151 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 210
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 211 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 270
Query: 239 GRTLLCGLHESLKVFSW 255
G+ ++ G ++L V+ W
Sbjct: 271 GKWIVSGSEDNL-VYIW 286
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 159 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 218
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 219 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 277
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 278 SEDNLVYIWNLQTKEIV 294
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +AA +A IK+W + K +T++GH+
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 193 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 229
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 120/257 (46%), Gaps = 7/257 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L D + +W ++SGH GI
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 239 GRTLLCGLHESLKVFSW 255
G+ ++ G ++L V+ W
Sbjct: 252 GKWIVSGSEDNL-VYIW 267
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 258
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 259 SEDNLVYIWNLQTKEIV 275
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 196 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 232
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 285 TDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 7/258 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 239 GRTLLCGLHESLKVFSWE 256
G+ ++ G ++L V+ W
Sbjct: 255 GKWIVSGSEDNL-VYIWN 271
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 261
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 262 SEDNLVYIWNLQTKEIV 278
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 74
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 134
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 135 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 194
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 195 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 231
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 163
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 164 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 223
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 224 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 284 TDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 7/258 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 193
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 194 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 253
Query: 239 GRTLLCGLHESLKVFSWE 256
G+ ++ G ++L V+ W
Sbjct: 254 GKWIVSGSEDNL-VYIWN 270
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 142 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 201
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 202 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 260
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 261 SEDNLVYIWNLQTKEIV 277
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 190 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 226
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 279 TDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 7/257 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 248
Query: 239 GRTLLCGLHESLKVFSW 255
G+ ++ G ++L V+ W
Sbjct: 249 GKWIVSGSEDNL-VYIW 264
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 255
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 256 SEDNLVYIWNLQTKEIV 272
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 70
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 130
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 131 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 190
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 191 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 227
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 159
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 160 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 219
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 220 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 280 TDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 7/257 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 189
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 190 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 249
Query: 239 GRTLLCGLHESLKVFSW 255
G+ ++ G ++L V+ W
Sbjct: 250 GKWIVSGSEDNL-VYIW 265
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 138 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 197
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 198 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 256
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 257 SEDNLVYIWNLQTKEIV 273
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 86
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 146
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 147 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 207 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 243
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 175
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 176 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 235
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 236 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 296 TDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 7/257 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 205
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 206 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 265
Query: 239 GRTLLCGLHESLKVFSW 255
G+ ++ G ++L V+ W
Sbjct: 266 GKWIVSGSEDNL-VYIW 281
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 154 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 213
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 214 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 272
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 273 SEDNLVYIWNLQTKEIV 289
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 196 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 232
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 285 TDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 7/258 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 239 GRTLLCGLHESLKVFSWE 256
G+ ++ G ++L V+ W
Sbjct: 255 GKWIVSGSEDNL-VYIWN 271
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 261
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 262 SEDNLVYIWNLQTKEIV 278
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 129
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 130 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 190 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 226
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 158
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 279 TDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 7/257 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 248
Query: 239 GRTLLCGLHESLKVFSW 255
G+ ++ G ++L V+ W
Sbjct: 249 GKWIVSGSEDNL-VYIW 264
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 137 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 196
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 197 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 255
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 256 SEDNLVYIWNLQTKEIV 272
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 193 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 229
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 7/257 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 239 GRTLLCGLHESLKVFSW 255
G+ ++ G ++L V+ W
Sbjct: 252 GKWIVSGSEDNL-VYIW 267
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K +
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 258
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 259 SEDNLVYIWNLQTKEIV 275
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 135
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 136 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 196 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 232
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 164
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 285 TDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 7/257 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 254
Query: 239 GRTLLCGLHESLKVFSW 255
G+ ++ G ++L V+ W
Sbjct: 255 GKWIVSGSEDNL-VYIW 270
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 143 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 202
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 203 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 261
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 262 SEDNLVYIWNLQTKEIV 278
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 65
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 125
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 126 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 185
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 186 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 222
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 154
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 155 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 214
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 215 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 275 TDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 7/257 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 64
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 184
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 185 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 244
Query: 239 GRTLLCGLHESLKVFSW 255
G+ ++ G ++L V+ W
Sbjct: 245 GKWIVSGSEDNL-VYIW 260
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 133 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 192
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 193 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 251
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 252 SEDNLVYIWNLQTKEIV 268
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 133 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 193 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 229
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 7/257 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 251
Query: 239 GRTLLCGLHESLKVFSW 255
G+ ++ G ++L V+ W
Sbjct: 252 GKWIVSGSEDNL-VYIW 267
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 106/209 (50%), Gaps = 7/209 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 161
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKF 211
+ HP E ++A+ + D+T+K
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKL 310
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 140 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 199
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 258
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 259 SEDNLVYIWNLQTKEIV 275
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 68
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 128
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ GK L H + + F+ L+ + S D + WD + + LI
Sbjct: 129 SVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 189 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 225
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S+ ++V+G D V +W + + +L H+ + +V F+
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFN 157
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 158 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 217
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 218 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 278 TDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 7/258 (2%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L+ +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 67
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 68 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 187
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN---PD 238
+ + + F P+ + + D T+K WD + + + + C+ N
Sbjct: 188 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTG 247
Query: 239 GRTLLCGLHESLKVFSWE 256
G+ ++ G ++L V+ W
Sbjct: 248 GKWIVSGSEDNL-VYIWN 264
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 103/197 (52%), Gaps = 6/197 (3%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S +LV+ +D + +W + + +L GH++ + +F+ L+ +G+ ++++WD+
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVN 147
+ K ++TL H +V F+ G S S D +IWD C+ T V+
Sbjct: 136 KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVS 195
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF----LLATG 203
++F+P+G+++++ DNT+KLWD + GK L + H+ + CI F + +G
Sbjct: 196 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FANFSVTGGKWIVSG 254
Query: 204 SADRTVKFWDLETFELI 220
S D V W+L+T E++
Sbjct: 255 SEDNLVYIWNLQTKEIV 271
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ G L H + + F+ L+ + S D + WD + + LI
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L +LK++ + +C
Sbjct: 193 DDNPPVSFVK---FSPNGKYILAATLDNTLKLWDYSKGKC 229
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S ++V+G D V +W + + +L H+ + +V F+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD LK+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 3/212 (1%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWD 213
+ + + F P+ + + D T+K WD
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 105/220 (47%), Gaps = 10/220 (4%)
Query: 48 KPNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI 105
KPN L +L+GHT + SV F + +A+ +A IK+W + K +T++GH+
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165
V + S S D LKIWD+ C+ T KGH+ V F P +VSG D
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----LIG 221
+V++WD+ G L H + + F+ L+ + S D + WD + + LI
Sbjct: 133 SVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Query: 222 SAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC 260
P S V+ F+P+G+ +L L LK++ + +C
Sbjct: 193 DDNPPVSFVK---FSPNGKYILAATLDNDLKLWDYSKGKC 229
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 107/210 (50%), Gaps = 7/210 (3%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD 68
L+ HS+ V C +S ++V+G D V +W + + +L H+ + +V F+
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFN 161
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKI 127
L+ + + G ++WD + ++TL + +S V F P G++ + +LD +LK+
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKL 221
Query: 128 WDIRKKGCIHTYKGHTRGVNAI--RFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
WD K C+ TY GH I F+ G+W+VSG EDN V +W+L +++ + H
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 185 EGQIQCIDFHPHEFLLATGSA--DRTVKFW 212
+ HP E ++A+ + D+T+K W
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 3/212 (1%)
Query: 4 KRAYKLQEFVA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI 62
K Y L +A H+ V+ +K + L + D + +W ++SGH GI
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKF-SPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD 122
V++ S L+ + + T+K+WD+ K ++TL GH + +F+P SGS D
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+++IWD++ C+ T H+ V+A+ F DG +VS D ++WD +G+ L
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 183 CHEG-QIQCIDFHPHEFLLATGSADRTVKFWD 213
+ + + F P+ + + D +K WD
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 102/209 (48%), Gaps = 12/209 (5%)
Query: 55 LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114
L GH++ + V+ ++ + + +++LW+L+ + GH + +SV F P
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 115 FFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTP--DGRWVVSGGEDNTVKLW 170
SG D L++W+++ + C+HT HT V+ +RF+P D +VSGG DN VK+W
Sbjct: 123 QIVSGGRDNALRVWNVKGE-CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL---ETFELIGSAGPET 227
DL G+L+ D K H + + P L A+ D + WDL E + + P
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAP-- 239
Query: 228 SGVRCLTFNPDGRTLLCGLHESLKVFSWE 256
+ + F+P+ + + +++F E
Sbjct: 240 --INQICFSPNRYWMCAATEKGIRIFDLE 266
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 79/149 (53%), Gaps = 5/149 (3%)
Query: 95 RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154
R L GH + V G F S S D +L++W+++ C + + GHT+ V ++ F+PD
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHP--HEFLLATGSADRTVK 210
R +VSGG DN +++W++ G+ +H H + C+ F P ++ +G D VK
Sbjct: 121 NRQIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 211 FWDLETFELIGSAGPETSGVRCLTFNPDG 239
WDL T L+ T+ V +T +PDG
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDG 208
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 14/229 (6%)
Query: 33 VTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92
V+ DH + LW + GHT + SV+F + +G +++W++ + +
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGE 141
Query: 93 IVRTLT-GHRSNCIS-VDFHPF--GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA 148
+ TL+ G ++ +S V F P SG D +K+WD+ + KGHT V +
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTS 201
Query: 149 IRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT 208
+ +PDG S +D +LWDLT G+ L + I I F P+ + + + ++
Sbjct: 202 VTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSPNRYWMCAAT-EKG 259
Query: 209 VKFWDLETFELIGSAGPETSGVR-----CLT--FNPDGRTLLCGLHESL 250
++ +DLE ++I PE G + C++ ++ DG TL G +++
Sbjct: 260 IRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNV 308
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 14 AHSSTVNCLKIGRK-SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV 72
AH+ V+C++ + V+V+GG D+ V +W + + L GHT+ + SV+
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 73 LVAAGAASGTIKLWDLEEAKIVRTL-TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131
L A+ G +LWDL + + + + G N I F P ++ + + ++I+D+
Sbjct: 210 LCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC--FSP-NRYWMCAATEKGIRIFDLE 266
Query: 132 KKGCIHTYKGHTRGVN-------AIRFTPDGRWVVSGGEDNTVKLWDLT 173
K I +G +I ++ DG + SG DN +++W ++
Sbjct: 267 NKDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 99.8 bits (247), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 108/226 (47%), Gaps = 20/226 (8%)
Query: 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE 71
H+ +V CL+ RV++TG D V +W + + +L H + + F++
Sbjct: 169 LTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG- 224
Query: 72 VLVAAGAASGTIKLWDLE---EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128
++ + +I +WD+ + + R L GHR+ VDF ++ S S D +K+W
Sbjct: 225 -MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVW 281
Query: 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQI 188
+ + T GH RG+ +++ R VVSG DNT++LWD+ G L + HE +
Sbjct: 282 NTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 339
Query: 189 QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET-SGVRCL 233
+CI F + +G+ D +K WD L+ + P +G CL
Sbjct: 340 RCIRFDNKR--IVSGAYDGKIKVWD-----LVAALDPRAPAGTLCL 378
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 24/239 (10%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL---SLSGHTSGIDSV 65
L + H V L R ++ ++VT +D + +W + P I L GH + ++ V
Sbjct: 206 LNTLIHHCEAVLHL---RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262
Query: 66 SFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNL 125
FD ++ A+G TIK+W+ + VRTL GH+ + + SGS D +
Sbjct: 263 DFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTI 318
Query: 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT--------AGKL 177
++WDI C+ +GH V IRF D + +VSG D +K+WDL AG L
Sbjct: 319 RLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL 376
Query: 178 -LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 235
L H G++ + F EF + + S D T+ WD + A P S R T+
Sbjct: 377 CLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN-DPAAQAEPPRSPSRTYTY 432
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 11/180 (6%)
Query: 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFAS 118
+ G+ + +D +++ +G TIK+WD + R LTGH + + + + +
Sbjct: 133 SKGVYCLQYDDQKIV--SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIIT 188
Query: 119 GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL---TAG 175
GS D+ +++WD+ ++T H V +RF + +V+ +D ++ +WD+ T
Sbjct: 189 GSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDI 246
Query: 176 KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 235
L H + +DF + A+G DRT+K W+ T E + + G+ CL +
Sbjct: 247 TLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIACLQY 304
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 5/118 (4%)
Query: 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP 195
IH ++GV +++ D + +VSG DNT+K+WD + H G + C+ +
Sbjct: 126 IHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY-- 181
Query: 196 HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVF 253
E ++ TGS+D TV+ WD+ T E++ + V L FN +G + C S+ V+
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVW 238
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 119/246 (48%), Gaps = 13/246 (5%)
Query: 2 TTKRAYKLQEFVAHSSTVNCLKIG---RKSSRVLVTGGEDHKVNLWAIGKPNAIL--SLS 56
T + ++ AH + + G +++S +VTG D V +W L SL
Sbjct: 18 TNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE 77
Query: 57 GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116
GH G+ SV + + A+ + I+LWDLE K ++++ + ++ F P ++
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYL 137
Query: 117 ASGSLDTNLKIWDIR--KKGCIHTYKGHTRG--VNAIRFTPDGRWVVSGGEDNTVKLWDL 172
A+G+ + I+ + KK Y TRG + +I ++PDG+++ SG D + ++D+
Sbjct: 138 ATGTHVGKVNIFGVESGKK----EYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 173 TAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232
GKLLH + H I+ + F P LL T S D +K +D++ L G+ S V
Sbjct: 194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN 253
Query: 233 LTFNPD 238
+ F PD
Sbjct: 254 VAFCPD 259
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 78/142 (54%)
Query: 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89
+ L +G D +N++ I + +L GH I S++F L+ + G IK++D++
Sbjct: 177 KYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQ 236
Query: 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
A + TL+GH S ++V F P F S S D ++K+WD+ + C+HT+ H V +
Sbjct: 237 HANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV 296
Query: 150 RFTPDGRWVVSGGEDNTVKLWD 171
++ +G +VS G+D + ++D
Sbjct: 297 KYNGNGSKIVSVGDDQEIHIYD 318
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S+ L TG KVN++ + SL I S+++ +A+GA G I ++D+
Sbjct: 134 SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI 193
Query: 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA 148
K++ TL GH S+ F P + + S D +KI+D++ T GH V
Sbjct: 194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLN 253
Query: 149 IRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT 208
+ F PD VS D +VK+WD+ +H F H+ Q+ + ++ + + + D+
Sbjct: 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE 313
Query: 209 VKFWD 213
+ +D
Sbjct: 314 IHIYD 318
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Query: 114 EFFASGSLDTNLKIWDIRKK--GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171
E +GSLD +K+W R + + +GH GV ++ + S D ++LWD
Sbjct: 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108
Query: 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVR 231
L GK + + F P LATG+ V + +E+ + S +
Sbjct: 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 232 CLTFNPDGRTLLCG 245
+ ++PDG+ L G
Sbjct: 169 SIAYSPDGKYLASG 182
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 158 VVSGGEDNTVKLWDLTAGKL--LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215
VV+G D+ VK+W +L + H+ + +D + A+ S D ++ WDLE
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 216 TFELIGS--AGPETSGVRCLTFNPDGRTLLCGLH 247
+ I S AGP + L F+PD + L G H
Sbjct: 111 NGKQIKSIDAGPVDA--WTLAFSPDSQYLATGTH 142
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 7/207 (3%)
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP-- 111
S++ HT+ + + SF +S++ + + GT LWD+E +++++ GH ++ + +D P
Sbjct: 149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208
Query: 112 FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171
G F SG D +WD+R C+ ++ H VN++R+ P G SG +D T +L+D
Sbjct: 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Query: 172 LTAGKLLHDFKCHEGQI---QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS 228
L A + + + E I +DF LL G D T+ WD+ + +
Sbjct: 269 LRADREVAIYS-KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN 327
Query: 229 GVRCLTFNPDGRTLLCG-LHESLKVFS 254
V L +PDG G +L+V++
Sbjct: 328 RVSTLRVSPDGTAFCSGSWDHTLRVWA 354
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 3/165 (1%)
Query: 9 LQEFVAHSSTVNCLKIG-RKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF 67
LQ F H + V CL + ++ V+GG D K +W + + + H S ++SV +
Sbjct: 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY 248
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR--SNCISVDFHPFGEFFASGSLDTNL 125
S A+G+ T +L+DL + V + SVDF G +G D +
Sbjct: 249 YPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI 308
Query: 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170
+WD+ K + GH V+ +R +PDG SG D+T+++W
Sbjct: 309 NVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 28/282 (9%)
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113
+L GH + + + + + + + + G + +WD +T + ++ + P G
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG 118
Query: 114 EFFASGSLDTNLKIWDI----------RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163
A G LD ++ + +KK + HT ++A FT +++
Sbjct: 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKK----SVAMHTNYLSACSFTNSDMQILTASG 174
Query: 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF--LLATGSADRTVKFWDLETFELIG 221
D T LWD+ +G+LL F H + C+D P E +G D+ WD+ + + +
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 222 SAGPETSGVRCLTFNPDGRTLL-------CGLHESLKVFSWEPIRCHDAVDVGWSRLSDL 274
+ S V + + P G C L++ L+ I +++ G S + D
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYD-LRADREVAIYSKESIIFGASSV-DF 292
Query: 275 NVHEGKLLGCSYNQSCVGVW-VVDISRIEPYTIGSVTRVNGL 315
++ G+LL YN + VW V+ SR+ G RV+ L
Sbjct: 293 SL-SGRLLFAGYNDYTINVWDVLKGSRV-SILFGHENRVSTL 332
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 125/311 (40%), Gaps = 40/311 (12%)
Query: 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-------GKPNAILSLSGHTSGIDSVSF 67
H+ V L +L++ D + W + G P + S GH+ + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDCTL 73
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127
+ + + T++LWD+ + + GH+S+ +SVD SGS D +K+
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTP------DGRWVVSGGEDNTVKLWDLTAGKLLHDF 181
W I+ + C+ T GH V+ +R P D ++S G D VK W+L ++ DF
Sbjct: 134 WTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 182 KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241
H I + P L+A+ D + W+L + + + + V L F+P+
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYW 251
Query: 242 LLCGLHESLKVFSWEPIRCHD----------------AVDVGWSRLSDLNVHEGKLLGCS 285
L +KVFS +P D AV + WS +G+ L
Sbjct: 252 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-------DGQTLFAG 304
Query: 286 YNQSCVGVWVV 296
Y + + VW V
Sbjct: 305 YTDNVIRVWQV 315
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF-- 67
Q FV H S V + I +K+S ++++G D + +W I K + +L GH + V
Sbjct: 101 QRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVP 158
Query: 68 ----DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
D V + + +K W+L + +I GH SN ++ P G AS D
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218
Query: 124 NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
+ +W++ K ++T V ++ F+P+ W+ + +K++ L L+ D +
Sbjct: 219 EIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRP 276
Query: 184 H-EGQIQCIDFHPHEFLLA---------TGSADRTVKFWDLET 216
G + + PH LA G D ++ W + T
Sbjct: 277 EFAGYSKAAE--PHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 125/311 (40%), Gaps = 40/311 (12%)
Query: 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-------GKPNAILSLSGHTSGIDSVSF 67
H+ V L +L++ D + W + G P + S GH+ + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDCTL 73
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127
+ + + T++LWD+ + + GH+S+ +SVD SGS D +K+
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTP------DGRWVVSGGEDNTVKLWDLTAGKLLHDF 181
W I+ + C+ T GH V+ +R P D ++S G D VK W+L ++ DF
Sbjct: 134 WTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 182 KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241
H I + P L+A+ D + W+L + + + + V L F+P+
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYW 251
Query: 242 LLCGLHESLKVFSWEPIRCHD----------------AVDVGWSRLSDLNVHEGKLLGCS 285
L +KVFS +P D AV + WS +G+ L
Sbjct: 252 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-------DGQTLFAG 304
Query: 286 YNQSCVGVWVV 296
Y + + VW V
Sbjct: 305 YTDNVIRVWQV 315
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF-- 67
Q FV H S V + I +K+S ++++G D + +W I K + +L GH + V
Sbjct: 101 QRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVP 158
Query: 68 ----DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
D V + + +K W+L + +I GH SN ++ P G AS D
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218
Query: 124 NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
+ +W++ K ++T V ++ F+P+ W+ + +K++ L L+ D +
Sbjct: 219 EIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRP 276
Query: 184 H-EGQIQCIDFHPHEFLLA---------TGSADRTVKFWDLET 216
G + + PH LA G D ++ W + T
Sbjct: 277 EFAGYSKAAE--PHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 125/311 (40%), Gaps = 40/311 (12%)
Query: 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-------GKPNAILSLSGHTSGIDSVSF 67
H+ V L +L++ D + W + G P + S GH+ + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDCTL 73
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127
+ + + T++LWD+ + + GH+S+ +SVD SGS D +K+
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTP------DGRWVVSGGEDNTVKLWDLTAGKLLHDF 181
W I+ + C+ T GH V+ +R P D ++S G D VK W+L ++ DF
Sbjct: 134 WTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 182 KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241
H I + P L+A+ D + W+L + + + + V L F+P+
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYW 251
Query: 242 LLCGLHESLKVFSWEPIRCHD----------------AVDVGWSRLSDLNVHEGKLLGCS 285
L +KVFS +P D AV + WS +G+ L
Sbjct: 252 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSA-------DGQTLFAG 304
Query: 286 YNQSCVGVWVV 296
Y + + VW V
Sbjct: 305 YTDNVIRVWQV 315
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 20/222 (9%)
Query: 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF-- 67
Q FV H S V + I +K+S ++++G D + +W I K + +L GH + V
Sbjct: 101 QRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVP 158
Query: 68 ----DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
D V + + +K W+L + +I GH SN ++ P G AS D
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218
Query: 124 NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
+ +W++ K ++T V ++ F+P+ W+ + +K++ L L+ D +
Sbjct: 219 EIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRP 276
Query: 184 HEGQIQCIDFHPHEFLLA---------TGSADRTVKFWDLET 216
PH LA G D ++ W + T
Sbjct: 277 EFAGYSAAA-EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 125/311 (40%), Gaps = 40/311 (12%)
Query: 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-------GKPNAILSLSGHTSGIDSVSF 67
H+ V L +L++ D + W + G P + S GH+ + +
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDCTL 67
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127
+ + + T++LWD+ + + GH+S+ +SVD SGS D +K+
Sbjct: 68 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 127
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTP------DGRWVVSGGEDNTVKLWDLTAGKLLHDF 181
W I+ + C+ T GH V+ +R P D ++S G D VK W+L ++ DF
Sbjct: 128 WTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 186
Query: 182 KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241
H I + P L+A+ D + W+L + + + + V L F+P+
Sbjct: 187 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYW 245
Query: 242 LLCGLHESLKVFSWEPIRCHD----------------AVDVGWSRLSDLNVHEGKLLGCS 285
L +KVFS +P D AV + WS +G+ L
Sbjct: 246 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-------DGQTLFAG 298
Query: 286 YNQSCVGVWVV 296
Y + + VW V
Sbjct: 299 YTDNVIRVWQV 309
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF-- 67
Q FV H S V + I +K+S ++++G D + +W I K + +L GH + V
Sbjct: 95 QRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVP 152
Query: 68 ----DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
D V + + +K W+L + +I GH SN ++ P G AS D
Sbjct: 153 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 212
Query: 124 NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
+ +W++ K ++T V ++ F+P+ W+ + +K++ L L+ D +
Sbjct: 213 EIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRP 270
Query: 184 H-EGQIQCIDFHPHEFLLA---------TGSADRTVKFWDLET 216
G + + PH LA G D ++ W + T
Sbjct: 271 EFAGYSKAAE--PHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 311
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/309 (23%), Positives = 124/309 (40%), Gaps = 40/309 (12%)
Query: 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-------GKPNAILSLSGHTSGIDSVSF 67
H+ V L +L++ D + W + G P + S GH+ + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDCTL 73
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127
+ + + T++LWD+ + + GH+S+ +SVD SGS D +K+
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKV 133
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTP------DGRWVVSGGEDNTVKLWDLTAGKLLHDF 181
W I+ + C+ T GH V+ +R P D ++S G D VK W+L ++ DF
Sbjct: 134 WTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF 192
Query: 182 KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241
H I + P L+A+ D + W+L + + + + V L F+P+
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYW 251
Query: 242 LLCGLHESLKVFSWEPIRCHD----------------AVDVGWSRLSDLNVHEGKLLGCS 285
L +KVFS +P D AV + WS +G+ L
Sbjct: 252 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-------DGQTLFAG 304
Query: 286 YNQSCVGVW 294
Y + + VW
Sbjct: 305 YTDNVIRVW 313
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 22/219 (10%)
Query: 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF-- 67
Q FV H S V + I +K+S ++++G D + +W I K + +L GH + V
Sbjct: 101 QRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVP 158
Query: 68 ----DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
D V + + +K W+L + +I GH SN ++ P G AS D
Sbjct: 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218
Query: 124 NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
+ +W++ K ++T V ++ F+P+ W+ + +K++ L L+ D +
Sbjct: 219 EIMLWNLAAKKAMYTLSAQDE-VFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRP 276
Query: 184 H-EGQIQCIDFHPHEFLLA---------TGSADRTVKFW 212
G + + PH LA G D ++ W
Sbjct: 277 EFAGYSKAAE--PHAVSLAWSADGQTLFAGYTDNVIRVW 313
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 123/311 (39%), Gaps = 40/311 (12%)
Query: 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-------GKPNAILSLSGHTSGIDSVSF 67
H+ V L +L++ D + W + G P + S GH+ + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDCTL 73
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127
+ + + T++LWD+ + + GH+S+ SVD SGS D +K+
Sbjct: 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKV 133
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTP------DGRWVVSGGEDNTVKLWDLTAGKLLHDF 181
W I+ + C+ T GH V+ +R P D ++S G D VK W+L ++ DF
Sbjct: 134 WTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADF 192
Query: 182 KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241
H I + P L+A+ D + W+L + + + V L F+P+
Sbjct: 193 IGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDE-VFSLAFSPNRYW 251
Query: 242 LLCGLHESLKVFSWEPIRCHD----------------AVDVGWSRLSDLNVHEGKLLGCS 285
L +KVFS +P D AV + WS +G+ L
Sbjct: 252 LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-------DGQTLFAG 304
Query: 286 YNQSCVGVWVV 296
Y + + VW V
Sbjct: 305 YTDNVIRVWQV 315
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 22/223 (9%)
Query: 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF-- 67
Q FV H S V + I +K+S + ++G D + +W I K + +L GH + V
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXI-ISGSRDKTIKVWTI-KGQCLATLLGHNDWVSQVRVVP 158
Query: 68 ----DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
D V + + +K W+L + +I GH SN ++ P G AS D
Sbjct: 159 NEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDG 218
Query: 124 NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
+ +W++ K +T V ++ F+P+ W+ + +K++ L L+ D +
Sbjct: 219 EIXLWNLAAKKAXYTLSAQDE-VFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRP 276
Query: 184 H-EGQIQCIDFHPHEFLLA---------TGSADRTVKFWDLET 216
G + + PH LA G D ++ W + T
Sbjct: 277 EFAGYSKAAE--PHAVSLAWSADGQTLFAGYTDNVIRVWQVXT 317
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 15/255 (5%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHTSGIDSVSFD 68
AH+ V + ++ ++V+ D + LW + K + A L+GH+ ++ V
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS 439
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128
S +G+ G ++LWDL R GH + +SV F S S D +K+W
Sbjct: 440 SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLW 499
Query: 129 DIRKKGCIHTY----KGHTRGVNAIRFTPDGRW--VVSGGEDNTVKLWDLTAGKLLHDFK 182
+ + C +T +GH V+ +RF+P+ +VS D TVK+W+L+ KL
Sbjct: 500 NTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA 558
Query: 183 CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 242
H G + + P L A+G D V WDL + + S S + L F+P+ R
Sbjct: 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL-EANSVIHALCFSPN-RYW 616
Query: 243 LCGLHE-SLKVFSWE 256
LC E +K++ E
Sbjct: 617 LCAATEHGIKIWDLE 631
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 106/242 (43%), Gaps = 26/242 (10%)
Query: 33 VTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD-LEEA 91
++G D ++ LW + + GHT + SV+F + + + TIKLW+ L E
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC 505
Query: 92 K--IVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVN 147
K I GHR V F P S S D +K+W++ T GHT V+
Sbjct: 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVS 565
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR 207
+ +PDG SGG+D V LWDL GK L+ + + I + F P+ + L + +
Sbjct: 566 TVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIHALCFSPNRYWLCAAT-EH 623
Query: 208 TVKFWDLETFELI-----------------GSAGPETSGVRC--LTFNPDGRTLLCGLHE 248
+K WDLE+ ++ G A + + C L ++ DG TL G +
Sbjct: 624 GIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683
Query: 249 SL 250
+
Sbjct: 684 GV 685
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 110/226 (48%), Gaps = 25/226 (11%)
Query: 54 SLSGHTSGIDSVS--FDSSEVLVAAGAASGTIKLWDL---EEAKIV--RTLTGHRSNCIS 106
++ HT + +++ D+++++V+A + +I LW L ++A V R LTGH
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSA-SRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 107 VDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166
V G+F SGS D L++WD+ + GHT+ V ++ F+ D R +VS D T
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 167 VKLWDLTAGKLLHDF----KCHEGQIQCIDFHPHEF--LLATGSADRTVKFWDLETFELI 220
+KLW+ T G+ + + H + C+ F P+ + + S D+TVK W+L +L
Sbjct: 496 IKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554
Query: 221 GSAGPETSGVRCLTFNPDGR----------TLLCGLHESLKVFSWE 256
+ T V + +PDG LL L E K++S E
Sbjct: 555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 76/178 (42%), Gaps = 22/178 (12%)
Query: 15 HSSTVNCLKIGRKSSR-VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
H V+C++ + + +V+ D V +W + +L+GHT + +V+ L
Sbjct: 516 HRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133
A+G G + LWDL E K + +L + S ++ F P ++ + + +KIWD+ K
Sbjct: 576 CASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCFSP-NRYWLCAATEHGIKIWDLESK 633
Query: 134 GCIHTYKGHTRG-------------------VNAIRFTPDGRWVVSGGEDNTVKLWDL 172
+ K + ++ ++ DG + SG D +++W +
Sbjct: 634 SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 9/162 (5%)
Query: 62 IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL 121
I SV F +A GA I++WD+E KIV L GH + S+D+ P G+ SGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 122 DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHD 180
D ++IWD+R C T GV + +P DG+++ +G D V++WD G L+
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 181 FKC-------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215
H+ + + F + +GS DR+VK W+L+
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 23/205 (11%)
Query: 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89
+ L TG ED + +W I ++ L GH I S+ + S + +G+ T+++WDL
Sbjct: 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 195
Query: 90 EAKIVRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYK-------G 141
+ TL+ +V P G++ A+GSLD +++WD + G
Sbjct: 196 TGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG 254
Query: 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK------CHEGQIQCIDF-- 193
H V ++ FT DG+ VVSG D +VKLW+L D K C I DF
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314
Query: 194 -----HPHEFLLATGSADRTVKFWD 213
E++L +GS DR V FWD
Sbjct: 315 SVATTQNDEYIL-SGSKDRGVLFWD 338
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 27/207 (13%)
Query: 32 LVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEE 90
LV+G D V +W + L+LS G+ +V+ + +AAG+ +++WD E
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 91 AKIVRTL-------TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG--------- 134
+V L TGH+ + SV F G+ SGSLD ++K+W+++
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 298
Query: 135 ---CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCI 191
C TY GH V ++ T + +++SG +D V WD +G L + H + +
Sbjct: 299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Query: 192 ------DFHPHEFLLATGSADRTVKFW 212
P + ATGS D + W
Sbjct: 359 AVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205
+ ++ F+PDG+++ +G ED +++WD+ K++ + HE I +D+ P L +GS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCG-LHESLKVFSWE 256
DRTV+ WDL T + + E GV + +P DG+ + G L +++V+ E
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN------------AILSLSGHTSG 61
H +V + R V V+G D V LW + N ++ GH
Sbjct: 254 GHKDSVYSVVFTRDGQSV-VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 62 IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISV------DFHPFGEF 115
+ SV+ ++ + +G+ + WD + + L GHR++ ISV P
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 372
Query: 116 FASGSLDTNLKIWDIRK 132
FA+GS D +IW +K
Sbjct: 373 FATGSGDCKARIWKYKK 389
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-------------- 181
+H HT V ++F+ DG ++ +G + T +++ ++ G L+
Sbjct: 57 LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLN 115
Query: 182 ----KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237
+ I+ + F P LATG+ DR ++ WD+E +++ + L + P
Sbjct: 116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 175
Query: 238 DGRTLLCG 245
G L+ G
Sbjct: 176 SGDKLVSG 183
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 12/236 (5%)
Query: 28 SSRVLVTGGEDHKVNLWAI----GKPNAILSLSGHTSGIDSVSF-DSSEVLVAAGAASGT 82
S + GG D+ +++ + G L+GHT + F D ++++ ++G T
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT--T 165
Query: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
LWD+E + T TGH + +S+ P F SG+ D + K+WD+R+ C T+ GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG---QIQCIDFHPHEFL 199
+NAI F P+G +G +D T +L+DL A + L + H+ I + F L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRL 284
Query: 200 LATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFS 254
L G D WD + G + V CL DG + G +S LK+++
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 48/253 (18%)
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113
+L GH + I ++ + + L+ + + G + +WD V + S ++ + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 114 EFFASGSLDT-----NLK----------------------------------------IW 128
+ A G LD NLK +W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQI 188
DI T+ GHT V ++ PD R VSG D + KLWD+ G F HE I
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 189 QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET--SGVRCLTFNPDGRTLLCGL 246
I F P+ ATGS D T + +DL + + + + G+ ++F+ GR LL G
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG- 288
Query: 247 HESLKVFSWEPIR 259
++ W+ ++
Sbjct: 289 YDDFNCNVWDALK 301
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
+ + RTL GH + ++ + S S D L IWD +H + V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 150 RFTPDGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205
+ P G +V GG DN +++L ++ + H G + C F + + T S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSG 162
Query: 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245
D T WD+ET + + T V L+ PD R + G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86
KS R+L+ G +D N+W K + L+GH + + + + VA G+ +K+W
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 87 D 87
+
Sbjct: 340 N 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 12/236 (5%)
Query: 28 SSRVLVTGGEDHKVNLWAI----GKPNAILSLSGHTSGIDSVSF-DSSEVLVAAGAASGT 82
S + GG D+ +++ + G L+GHT + F D ++++ ++G T
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT--T 165
Query: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
LWD+E + T TGH + +S+ P F SG+ D + K+WD+R+ C T+ GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG---QIQCIDFHPHEFL 199
+NAI F P+G +G +D T +L+DL A + L + H+ I + F L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRL 284
Query: 200 LATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFS 254
L G D WD + G + V CL DG + G +S LK+++
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 48/253 (18%)
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113
+L GH + I ++ + + L+ + + G + +WD V + S ++ + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 114 EFFASGSLDT-----NLK----------------------------------------IW 128
+ A G LD NLK +W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQI 188
DI T+ GHT V ++ PD R VSG D + KLWD+ G F HE I
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 189 QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET--SGVRCLTFNPDGRTLLCGL 246
I F P+ ATGS D T + +DL + + + + G+ ++F+ GR LL G
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG- 288
Query: 247 HESLKVFSWEPIR 259
++ W+ ++
Sbjct: 289 YDDFNCNVWDALK 301
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
+ + RTL GH + ++ + S S D L IWD +H + V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 150 RFTPDGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205
+ P G +V GG DN +++L ++ + H G + C F + + T S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSG 162
Query: 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245
D T WD+ET + + T V L+ PD R + G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86
KS R+L+ G +D N+W K + L+GH + + + + VA G+ +K+W
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 87 D 87
+
Sbjct: 340 N 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 12/236 (5%)
Query: 28 SSRVLVTGGEDHKVNLWAI----GKPNAILSLSGHTSGIDSVSF-DSSEVLVAAGAASGT 82
S + GG D+ +++ + G L+GHT + F D ++++ ++G T
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT--T 165
Query: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
LWD+E + T TGH + +S+ P F SG+ D + K+WD+R+ C T+ GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG---QIQCIDFHPHEFL 199
+NAI F P+G +G +D T +L+DL A + L + H+ I + F L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRL 284
Query: 200 LATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFS 254
L G D WD + G + V CL DG + G +S LK+++
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 48/253 (18%)
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113
+L GH + I ++ + + L+ + + G + +WD V + S ++ + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 114 EFFASGSLDT-----NLK----------------------------------------IW 128
+ A G LD NLK +W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQI 188
DI T+ GHT V ++ PD R VSG D + KLWD+ G F HE I
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 189 QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET--SGVRCLTFNPDGRTLLCGL 246
I F P+ ATGS D T + +DL + + + + G+ ++F+ GR LL G
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG- 288
Query: 247 HESLKVFSWEPIR 259
++ W+ ++
Sbjct: 289 YDDFNCNVWDALK 301
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
+ + RTL GH + ++ + S S D L IWD +H + V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 150 RFTPDGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205
+ P G +V GG DN +++L ++ + H G + C F + + T S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSG 162
Query: 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245
D T WD+ET + + T V L+ PD R + G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86
KS R+L+ G +D N+W K + L+GH + + + + VA G+ +K+W
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 87 D 87
+
Sbjct: 340 N 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 12/236 (5%)
Query: 28 SSRVLVTGGEDHKVNLWAI----GKPNAILSLSGHTSGIDSVSF-DSSEVLVAAGAASGT 82
S + GG D+ +++ + G L+GHT + F D ++++ ++G T
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT--T 165
Query: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
LWD+E + T TGH + +S+ P F SG+ D + K+WD+R+ C T+ GH
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 225
Query: 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG---QIQCIDFHPHEFL 199
+NAI F P+G +G +D T +L+DL A + L + H+ I + F L
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRL 284
Query: 200 LATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFS 254
L G D WD + G + V CL DG + G +S LK+++
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 48/253 (18%)
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113
+L GH + I ++ + + L+ + + G + +WD V + S ++ + P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 114 EFFASGSLDT-----NLK----------------------------------------IW 128
+ A G LD NLK +W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQI 188
DI T+ GHT V ++ PD R VSG D + KLWD+ G F HE I
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 189 QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET--SGVRCLTFNPDGRTLLCGL 246
I F P+ ATGS D T + +DL + + + + G+ ++F+ GR LL G
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG- 288
Query: 247 HESLKVFSWEPIR 259
++ W+ ++
Sbjct: 289 YDDFNCNVWDALK 301
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
+ + RTL GH + ++ + S S D L IWD +H + V
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 150 RFTPDGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205
+ P G +V GG DN +++L ++ + H G + C F + + T S
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSG 162
Query: 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245
D T WD+ET + + T V L+ PD R + G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86
KS R+L+ G +D N+W K + L+GH + + + + VA G+ +K+W
Sbjct: 280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Query: 87 D 87
+
Sbjct: 340 N 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 12/236 (5%)
Query: 28 SSRVLVTGGEDHKVNLWAI----GKPNAILSLSGHTSGIDSVSF-DSSEVLVAAGAASGT 82
S + GG D+ +++ + G L+GHT + F D ++++ ++G T
Sbjct: 119 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT--T 176
Query: 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
LWD+E + T TGH + +S+ P F SG+ D + K+WD+R+ C T+ GH
Sbjct: 177 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH 236
Query: 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG---QIQCIDFHPHEFL 199
+NAI F P+G +G +D T +L+DL A + L + H+ I + F L
Sbjct: 237 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRL 295
Query: 200 LATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFS 254
L G D WD + G + V CL DG + G +S LK+++
Sbjct: 296 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 100/253 (39%), Gaps = 48/253 (18%)
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113
+L GH + I ++ + + L+ + + G + +WD V + S ++ + P G
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 114 EFFASGSLDT-----NLK----------------------------------------IW 128
+ A G LD NLK +W
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 180
Query: 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQI 188
DI T+ GHT V ++ PD R VSG D + KLWD+ G F HE I
Sbjct: 181 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 240
Query: 189 QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET--SGVRCLTFNPDGRTLLCGL 246
I F P+ ATGS D T + +DL + + + + G+ ++F+ GR LL G
Sbjct: 241 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG- 299
Query: 247 HESLKVFSWEPIR 259
++ W+ ++
Sbjct: 300 YDDFNCNVWDALK 312
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 5/160 (3%)
Query: 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
+ + RTL GH + ++ + S S D L IWD +H + V
Sbjct: 55 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 114
Query: 150 RFTPDGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205
+ P G +V GG DN +++L ++ + H G + C F + + T S
Sbjct: 115 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSG 173
Query: 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245
D T WD+ET + + T V L+ PD R + G
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 213
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86
KS R+L+ G +D N+W K + L+GH + + + + VA G+ +K+W
Sbjct: 291 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Query: 87 D 87
+
Sbjct: 351 N 351
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 7/222 (3%)
Query: 24 IGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83
I RK+ ++ G +D ++ ++ ++ H I S++ ++ V +G+ T+
Sbjct: 64 IARKNW--IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 84 KLWDLEE-AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK- 140
KLW+ E + +T GH + V F+P FASG LD +K+W + + T
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 141 GHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF 198
G RGVN + + P D ++++ +D T+K+WD + + H + FHP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 199 LLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240
++ +GS D T+K W+ T+++ + C+ +P GR
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 6/193 (3%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-LSLSGHTSGIDSVS 66
K+ +F AH + + + VL +G +D V LW A+ + GH + V+
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 67 FDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGE--FFASGSLD 122
F+ + A+G T+K+W L ++ TLT G VD++P + + + S D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+KIWD + K C+ T +GH V+ F P ++SG ED T+K+W+ + K+
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Query: 183 CHEGQIQCIDFHP 195
+ CI HP
Sbjct: 268 VGLERSWCIATHP 280
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 10/239 (4%)
Query: 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99
+V LW + S+ + + + F + + + G+ I++++ + V
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 100 HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYKGHTRGVNAIRFTP-DGRW 157
H S+ HP + SGS D +K+W+ + T++GH V + F P D
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 158 VVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ---IQCIDFH--PHEFLLATGSADRTVKFW 212
SG D TVK+W L G+ +F GQ + +D++ P + + T S D T+K W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 213 DLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSR 270
D +T + + S V F+P ++ G + +LK+++ + ++VG R
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Query: 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT 152
I +T + +DFHP + + +++W+ + + + + V A +F
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFW 212
W++ G +D +++++ G+ + DF+ H I+ I HP + + +GS D TVK W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 213 DLE-TFELIGSAGPETSGVRCLTFNP-DGRTLLCG-LHESLKVFS 254
+ E + L + V C+ FNP D T G L ++KV+S
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 32 LVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91
++T +D + +W + + +L GH S + F + ++ +G+ GT+K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 92 KIVRTLTG--HRSNCISVDFHPFGE--FFASG 119
K+ +TL RS CI+ HP G + ASG
Sbjct: 261 KVEKTLNVGLERSWCIAT--HPTGRKNYIASG 290
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 7/222 (3%)
Query: 24 IGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83
I RK+ ++ G +D ++ ++ ++ H I S++ ++ V +G+ T+
Sbjct: 64 IARKNW--IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 84 KLWDLEE-AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK- 140
KLW+ E + +T GH + V F+P FASG LD +K+W + + T
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 141 GHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF 198
G RGVN + + P D ++++ +D T+K+WD + + H + FHP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 199 LLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240
++ +GS D T+K W+ T+++ + C+ +P GR
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 6/193 (3%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-LSLSGHTSGIDSVS 66
K+ +F AH + + + VL +G +D V LW A+ + GH + V+
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 67 FDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGE--FFASGSLD 122
F+ + A+G T+K+W L ++ TLT G VD++P + + + S D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+KIWD + K C+ T +GH V+ F P ++SG ED T+K+W+ + K+
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Query: 183 CHEGQIQCIDFHP 195
+ CI HP
Sbjct: 268 VGLERSWCIATHP 280
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 10/239 (4%)
Query: 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99
+V LW + S+ + + + F + + + G+ I++++ + V
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 100 HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYKGHTRGVNAIRFTP-DGRW 157
H S+ HP + SGS D +K+W+ + T++GH V + F P D
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 158 VVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ---IQCIDFH--PHEFLLATGSADRTVKFW 212
SG D TVK+W L G+ +F GQ + +D++ P + + T S D T+K W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 213 DLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSR 270
D +T + + S V F+P ++ G + +LK+++ + ++VG R
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Query: 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT 152
I +T + +DFHP + + +++W+ + + + + V A +F
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFW 212
W++ G +D +++++ G+ + DF+ H I+ I HP + + +GS D TVK W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 213 DLE-TFELIGSAGPETSGVRCLTFNP-DGRTLLCG-LHESLKVFS 254
+ E + L + V C+ FNP D T G L ++KV+S
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 32 LVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91
++T +D + +W + + +L GH S + F + ++ +G+ GT+K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 92 KIVRTLTG--HRSNCISVDFHPFGE--FFASG 119
K+ +TL RS CI+ HP G + ASG
Sbjct: 261 KVEKTLNVGLERSWCIAT--HPTGRKNYIASG 290
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 7/222 (3%)
Query: 24 IGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83
I RK+ ++ G +D ++ ++ ++ H I S++ ++ V +G+ T+
Sbjct: 64 IARKNW--IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 84 KLWDLEEA-KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYK- 140
KLW+ E + +T GH + V F+P FASG LD +K+W + + T
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 141 GHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF 198
G RGVN + + P D ++++ +D T+K+WD + + H + FHP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 199 LLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240
++ +GS D T+K W+ T+++ + C+ +P GR
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 6/193 (3%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-LSLSGHTSGIDSVS 66
K+ +F AH + + + VL +G +D V LW A+ + GH + V+
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 67 FDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGE--FFASGSLD 122
F+ + A+G T+K+W L ++ TLT G VD++P + + + S D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+KIWD + K C+ T +GH V+ F P ++SG ED T+K+W+ + K+
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Query: 183 CHEGQIQCIDFHP 195
+ CI HP
Sbjct: 268 VGLERSWCIATHP 280
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 10/239 (4%)
Query: 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99
+V +W + S+ + + + F + + + G+ I++++ + V
Sbjct: 36 RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 100 HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYKGHTRGVNAIRFTP-DGRW 157
H S+ HP + SGS D +K+W+ + T++GH V + F P D
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 158 VVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ---IQCIDFH--PHEFLLATGSADRTVKFW 212
SG D TVK+W L G+ +F GQ + +D++ P + + T S D T+K W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 213 DLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSR 270
D +T + + S V F+P ++ G + +LK+++ + ++VG R
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Query: 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT 152
I +T + +DFHP + + ++IW+ + + + + V A +F
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFW 212
W++ G +D +++++ G+ + DF+ H I+ I HP + + +GS D TVK W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 213 DLE-TFELIGSAGPETSGVRCLTFNP-DGRTLLCG-LHESLKVFS 254
+ E + L + V C+ FNP D T G L ++KV+S
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 32 LVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91
++T +D + +W + + +L GH S + F + ++ +G+ GT+K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 92 KIVRTLTG--HRSNCISVDFHPFGE--FFASG 119
K+ +TL RS CI+ HP G + ASG
Sbjct: 261 KVEKTLNVGLERSWCIAT--HPTGRKNYIASG 290
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 106/222 (47%), Gaps = 7/222 (3%)
Query: 24 IGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83
I RK+ ++ G +D ++ ++ ++ H I S++ ++ V +G+ T+
Sbjct: 64 IARKNW--IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 84 KLWDLEE-AKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYK- 140
KLW+ E + +T GH + V F+P FASG LD +K+W + + T
Sbjct: 122 KLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 141 GHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF 198
G RGVN + + P D ++++ +D T+K+WD + + H + FHP
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 199 LLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240
++ +GS D T+K W+ T+++ + C+ +P GR
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 6/193 (3%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-LSLSGHTSGIDSVS 66
K+ +F AH + + + VL +G +D V LW A+ + GH + V+
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 67 FDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGE--FFASGSLD 122
F+ + A+G T+K+W L ++ TLT G VD++P + + + S D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182
+KIWD + K C+ T +GH V+ F P ++SG ED T+K+W+ + K+
Sbjct: 208 LTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLN 267
Query: 183 CHEGQIQCIDFHP 195
+ CI HP
Sbjct: 268 VGLERSWCIATHP 280
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 105/239 (43%), Gaps = 10/239 (4%)
Query: 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99
+V LW + S+ + + + F + + + G+ I++++ + V
Sbjct: 36 RVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA 95
Query: 100 HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYKGHTRGVNAIRFTP-DGRW 157
H S+ HP + SGS D +K+W+ + T++GH V + F P D
Sbjct: 96 HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 158 VVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ---IQCIDFH--PHEFLLATGSADRTVKFW 212
SG D TVK+W L G+ +F GQ + +D++ P + + T S D T+K W
Sbjct: 156 FASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Query: 213 DLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSR 270
D +T + + S V F+P ++ G + +LK+++ + ++VG R
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 3/165 (1%)
Query: 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT 152
I +T + +DFHP + + +++W+ + + + + V A +F
Sbjct: 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFI 64
Query: 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFW 212
W++ G +D +++++ G+ + DF+ H I+ I HP + + +GS D TVK W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 213 DLE-TFELIGSAGPETSGVRCLTFNP-DGRTLLCG-LHESLKVFS 254
+ E + L + V C+ FNP D T G L ++KV+S
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWS 169
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 32 LVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91
++T +D + +W + + +L GH S + F + ++ +G+ GT+K+W+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 92 KIVRTLTG--HRSNCISVDFHPFG--EFFASG 119
K+ +TL RS CI+ HP G + ASG
Sbjct: 261 KVEKTLNVGLERSWCIAT--HPTGRKNYIASG 290
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/260 (30%), Positives = 116/260 (44%), Gaps = 33/260 (12%)
Query: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD---SSEVLVAAGAASGTIK 84
SS VLV H G+ N L L GH +S++ S +L A+ TI
Sbjct: 146 SSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASD--DHTIC 203
Query: 85 LWDL----EEAKIVRT---LTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCI 136
LWD+ +E K+V TGH + V +H E F S + D L IWD R
Sbjct: 204 LWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTS 263
Query: 137 ---HTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCI 191
H+ HT VN + F P +++ +G D TV LWDL KL LH F+ H+ +I +
Sbjct: 264 KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 323
Query: 192 DFHPH-EFLLATGSADRTVKFWDLETF--------------ELIGSAGPETSGVRCLTFN 236
+ PH E +LA+ DR + WDL EL+ G T+ + ++N
Sbjct: 324 QWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWN 383
Query: 237 PDGRTLLCGLHESLKVFSWE 256
P+ ++C + E + W+
Sbjct: 384 PNEPWVICSVSEDNIMQVWQ 403
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 25/184 (13%)
Query: 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLW-----AIGKPNAILSLSGHTSGIDSVS 66
F H++ V + + + +D K+ +W KP+ S+ HT+ ++ +S
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSH--SVDAHTAEVNCLS 280
Query: 67 FDS-SEVLVAAGAASGTIKLWDLEEAKI-VRTLTGHRSNCISVDFHPFGE-FFASGSLDT 123
F+ SE ++A G+A T+ LWDL K+ + + H+ V + P E AS D
Sbjct: 281 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 340
Query: 124 NLKIWDIRKKG--------------CIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVK 168
L +WD+ K G + + GHT ++ + P+ WV+ S EDN ++
Sbjct: 341 RLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQ 400
Query: 169 LWDL 172
+W +
Sbjct: 401 VWQM 404
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI--------------GKPNAIL 53
KL F +H + ++ + +L + G D ++N+W + G P +
Sbjct: 309 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLF 368
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTI-KLWDLEE 90
GHT+ I S++ +E V + I ++W + E
Sbjct: 369 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAE 406
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 114/218 (52%), Gaps = 13/218 (5%)
Query: 38 DHKVNLWAIGKPNAILSLSGHTSG--IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95
D+ V LW+ + + L G I SV++ +A G +S ++LWD+++ K +R
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIRFTPD 154
+T H + S+ ++ + +SGS ++ D+R + + T GH++ V +R+ PD
Sbjct: 195 NMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 252
Query: 155 GRWVVSGGEDNTVKLWDLTAGK----LLHDFKCHEGQIQCIDFHPHEF-LLAT--GSADR 207
GR + SGG DN V +W G+ L F H+G ++ + + P + +LAT G++DR
Sbjct: 253 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 312
Query: 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245
++ W++ + + SA S V + ++P + L+ G
Sbjct: 313 HIRIWNVCSGACL-SAVDAHSQVCSILWSPHYKELISG 349
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLW----AIGKPNAILSLSGHTSGIDSVSF--D 68
HS V L+ R L +GG D+ VN+W G + + + H + +V++
Sbjct: 240 HSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 69 SSEVLVAAGAASGT-IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS--LDTNL 125
S VL G S I++W++ + + H C S+ + P + SG L
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC-SILWSPHYKELISGHGFAQNQL 357
Query: 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170
IW + KGHT V ++ +PDG V S D T++LW
Sbjct: 358 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 99/245 (40%), Gaps = 57/245 (23%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86
K L G +V LW + + + +++ H++ + S+S++S ++++G+ SG I
Sbjct: 168 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHH 225
Query: 87 DLEEAKI-VRTLTGHRSNCISVDFHPFGEFFASG-------------------------- 119
D+ A+ V TL+GH + + P G ASG
Sbjct: 226 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285
Query: 120 -----------------------SLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156
+ D +++IW++ C+ H++ V +I ++P +
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYK 344
Query: 157 WVVSGG--EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214
++SG N + +W + + K H ++ + P +A+ +AD T++ W
Sbjct: 345 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW-- 402
Query: 215 ETFEL 219
FEL
Sbjct: 403 RCFEL 407
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
AHS + L + G +++ +W + L GHTS + S++
Sbjct: 330 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 389
Query: 74 VAAGAASGTIKLWDLEEAKIVR 95
VA+ AA T++LW E R
Sbjct: 390 VASAAADETLRLWRCFELDPAR 411
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 114/218 (52%), Gaps = 13/218 (5%)
Query: 38 DHKVNLWAIGKPNAILSLSGHTSG--IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95
D+ V LW+ + + L G I SV++ +A G +S ++LWD+++ K +R
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIRFTPD 154
+T H + S+ ++ + +SGS ++ D+R + + T GH++ V +R+ PD
Sbjct: 184 NMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 241
Query: 155 GRWVVSGGEDNTVKLWDLTAGK----LLHDFKCHEGQIQCIDFHPHEF-LLAT--GSADR 207
GR + SGG DN V +W G+ L F H+G ++ + + P + +LAT G++DR
Sbjct: 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301
Query: 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245
++ W++ + + SA S V + ++P + L+ G
Sbjct: 302 HIRIWNVCSGACL-SAVDAHSQVCSILWSPHYKELISG 338
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 11/165 (6%)
Query: 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLW----AIGKPNAILSLSGHTSGIDSVSF--D 68
HS V L+ R L +GG D+ VN+W G + + + H + +V++
Sbjct: 229 HSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 69 SSEVLVAAGAASGT-IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS--LDTNL 125
S VL G S I++W++ + + H C S+ + P + SG L
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC-SILWSPHYKELISGHGFAQNQL 346
Query: 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170
IW + KGHT V ++ +PDG V S D T++LW
Sbjct: 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 99/245 (40%), Gaps = 57/245 (23%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86
K L G +V LW + + + +++ H++ + S+S++S ++++G+ SG I
Sbjct: 157 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHH 214
Query: 87 DLEEAKI-VRTLTGHRSNCISVDFHPFGEFFASG-------------------------- 119
D+ A+ V TL+GH + + P G ASG
Sbjct: 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274
Query: 120 -----------------------SLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156
+ D +++IW++ C+ H++ V +I ++P +
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYK 333
Query: 157 WVVSGG--EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214
++SG N + +W + + K H ++ + P +A+ +AD T++ W
Sbjct: 334 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW-- 391
Query: 215 ETFEL 219
FEL
Sbjct: 392 RCFEL 396
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
AHS + L + G +++ +W + L GHTS + S++
Sbjct: 319 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGAT 378
Query: 74 VAAGAASGTIKLWDLEEAKIVR 95
VA+ AA T++LW E R
Sbjct: 379 VASAAADETLRLWRCFELDPAR 400
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 114/258 (44%), Gaps = 29/258 (11%)
Query: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLW 86
SS VLV H G+ L L GH +S++ + + + + TI LW
Sbjct: 150 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209
Query: 87 DL----EEAKIV---RTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCI-- 136
D+ +E +++ TGH + V +H E F S + D L IWD R
Sbjct: 210 DINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP 269
Query: 137 -HTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDF 193
HT HT VN + F P +++ +G D TV LWDL KL LH F+ H+ +I + +
Sbjct: 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 329
Query: 194 HPH-EFLLATGSADRTVKFWDLETF--------------ELIGSAGPETSGVRCLTFNPD 238
PH E +LA+ DR + WDL EL+ G T+ + ++NP+
Sbjct: 330 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 389
Query: 239 GRTLLCGLHESLKVFSWE 256
++C + E + W+
Sbjct: 390 EPWIICSVSEDNIMQVWQ 407
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 63/175 (36%), Gaps = 57/175 (32%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
AH++ VNCL S +L TG D V LW + L L H SF+S
Sbjct: 275 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN----LKLKLH-------SFES---- 319
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK 132
H+ V + P E AS D L +WD+ K
Sbjct: 320 --------------------------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353
Query: 133 KG--------------CIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDL 172
G + + GHT ++ + P+ W++ S EDN +++W +
Sbjct: 354 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI--------------GKPNAIL 53
KL F +H + ++ + +L + G D ++++W + G P +
Sbjct: 313 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 372
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTI-KLWDLEE 90
GHT+ I S++ +E + + I ++W + E
Sbjct: 373 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 114/258 (44%), Gaps = 29/258 (11%)
Query: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLW 86
SS VLV H G+ L L GH +S++ + + + + TI LW
Sbjct: 152 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 211
Query: 87 DL----EEAKIV---RTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCI-- 136
D+ +E +++ TGH + V +H E F S + D L IWD R
Sbjct: 212 DINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP 271
Query: 137 -HTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDF 193
HT HT VN + F P +++ +G D TV LWDL KL LH F+ H+ +I + +
Sbjct: 272 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 331
Query: 194 HPH-EFLLATGSADRTVKFWDLETF--------------ELIGSAGPETSGVRCLTFNPD 238
PH E +LA+ DR + WDL EL+ G T+ + ++NP+
Sbjct: 332 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 391
Query: 239 GRTLLCGLHESLKVFSWE 256
++C + E + W+
Sbjct: 392 EPWIICSVSEDNIMQVWQ 409
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 63/175 (36%), Gaps = 57/175 (32%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
AH++ VNCL S +L TG D V LW + L L H SF+S
Sbjct: 277 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN----LKLKLH-------SFES---- 321
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK 132
H+ V + P E AS D L +WD+ K
Sbjct: 322 --------------------------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 355
Query: 133 KG--------------CIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDL 172
G + + GHT ++ + P+ W++ S EDN +++W +
Sbjct: 356 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI--------------GKPNAIL 53
KL F +H + ++ + +L + G D ++++W + G P +
Sbjct: 315 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 374
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTI-KLWDLEE 90
GHT+ I S++ +E + + I ++W + E
Sbjct: 375 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 412
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/258 (28%), Positives = 114/258 (44%), Gaps = 29/258 (11%)
Query: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLW 86
SS VLV H G+ L L GH +S++ + + + + TI LW
Sbjct: 154 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 213
Query: 87 DL----EEAKIV---RTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCI-- 136
D+ +E +++ TGH + V +H E F S + D L IWD R
Sbjct: 214 DINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP 273
Query: 137 -HTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDF 193
HT HT VN + F P +++ +G D TV LWDL KL LH F+ H+ +I + +
Sbjct: 274 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 333
Query: 194 HPH-EFLLATGSADRTVKFWDLETF--------------ELIGSAGPETSGVRCLTFNPD 238
PH E +LA+ DR + WDL EL+ G T+ + ++NP+
Sbjct: 334 SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPN 393
Query: 239 GRTLLCGLHESLKVFSWE 256
++C + E + W+
Sbjct: 394 EPWIICSVSEDNIMQVWQ 411
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 63/175 (36%), Gaps = 57/175 (32%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
AH++ VNCL S +L TG D V LW + L L H SF+S
Sbjct: 279 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN----LKLKLH-------SFES---- 323
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK 132
H+ V + P E AS D L +WD+ K
Sbjct: 324 --------------------------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 357
Query: 133 KG--------------CIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDL 172
G + + GHT ++ + P+ W++ S EDN +++W +
Sbjct: 358 IGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI--------------GKPNAIL 53
KL F +H + ++ + +L + G D ++++W + G P +
Sbjct: 317 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF 376
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTI-KLWDLEE 90
GHT+ I S++ +E + + I ++W + E
Sbjct: 377 IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 414
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/269 (24%), Positives = 104/269 (38%), Gaps = 57/269 (21%)
Query: 32 LVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91
+ + G D + ++ +L + H + +F S + +A +A +K+WD
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689
Query: 92 KIVRTLTGH--RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
K+V T H + NC A+GS D LK+WD+ +K C +T GHT VN
Sbjct: 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 150 RFTPDGRWVVSGGEDNTVKLWD-------------------------------------- 171
RF+PD + S D T++LWD
Sbjct: 750 RFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSAD 809
Query: 172 ----LTAGK---LLHDF-------KCHEGQ---IQCIDFHPHEFLLATGSADRTVKFWDL 214
+ A K LL D + H G IQ DF P++ L + V+ W++
Sbjct: 810 GDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869
Query: 215 ETFELIGSAGPETSGVRCLTFNPDGRTLL 243
++ + S V + F+PDG + L
Sbjct: 870 DSRLKVADCRGHLSWVHGVMFSPDGSSFL 898
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 83/387 (21%), Positives = 141/387 (36%), Gaps = 105/387 (27%)
Query: 15 HSSTVNCLKIGRKSSRVLV-TGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
HS VNC KS+ +L+ TG D + LW + + ++ GHT+ ++ F + L
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 757
Query: 74 VAAGAASGTIKL------------------------------------WDLEEAKIV--- 94
+A+ +A GT++L W + KI+
Sbjct: 758 LASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817
Query: 95 ----------------RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT 138
TGH S DF P+ +++W+I + +
Sbjct: 818 KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVAD 877
Query: 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD--------------------------- 171
+GH V+ + F+PDG ++ +D T+++W+
Sbjct: 878 CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 937
Query: 172 ----------LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG 221
L AGK E Q+ C PH +A G D +K +L +
Sbjct: 938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS 997
Query: 222 SAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEP-----IRCHDAVDVGWSRLSDLN 275
S VR + F DG+TL+ +S ++V++W+ ++ H + L D
Sbjct: 998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQD-- 1055
Query: 276 VHEGKLLGCSYNQSCVGVWVVDISRIE 302
+LL S++ + V VW V RIE
Sbjct: 1056 ---SRLLSWSFDGT-VKVWNVITGRIE 1078
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 15/216 (6%)
Query: 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPF 112
L + HT + F +A+ A T++++ E + + + H + F
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 668
Query: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT--PDGRWVVSGGEDNTVKLW 170
+ A+ S D +KIWD +HTY H+ VN FT + + +G D +KLW
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 728
Query: 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-----------FEL 219
DL + + H + F P + LLA+ SAD T++ WD+ + F L
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788
Query: 220 IGSAGPETSG--VRCLTFNPDGRTLLCGLHESLKVF 253
PE V+C +++ DG ++ + +F
Sbjct: 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 2/172 (1%)
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133
VA G G IK+ +L ++ + GH+ + F G+ S S D+ +++W+ +
Sbjct: 976 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035
Query: 134 GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDF 193
+ + H V R D R ++S D TVK+W++ G++ DF CH+G +
Sbjct: 1036 DYVFL-QAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1093
Query: 194 HPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245
++ SAD+T K W + + VRC F+ DG L G
Sbjct: 1094 SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATG 1145
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 13/223 (5%)
Query: 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89
+ L++ ED + +W + + L H + L++ + GT+K+W++
Sbjct: 1016 KTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLS-WSFDGTVKVWNVI 1073
Query: 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
+I R T H+ +S F+S S D KIW +H KGH V
Sbjct: 1074 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS 1133
Query: 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF---------KCHEGQIQCIDFHPHEFLL 200
F+ DG + +G ++ +++W+++ G+LLH H G + + F P L
Sbjct: 1134 AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTL 1193
Query: 201 ATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL 243
SA +K+W++ T + + + ++ + +PD RT +
Sbjct: 1194 V--SAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYV 1234
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 107/259 (41%), Gaps = 32/259 (12%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF 67
KL + AH V C S + T D KV +W + + H+ ++ F
Sbjct: 656 KLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 714
Query: 68 --DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNL 125
S+ +L+A G+ +KLWDL + + T+ GH ++ F P E AS S D L
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 774
Query: 126 KIWDIRKKGCIHTYKGHTRGVNAIRF--------------------TPDGRWVVSGGEDN 165
++WD+R + +N RF + DG ++ + N
Sbjct: 775 RLWDVRS-------ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK-N 826
Query: 166 TVKLWDL-TAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG 224
V L+D+ T+G L H IQ DF P++ L + V+ W++++ +
Sbjct: 827 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR 886
Query: 225 PETSGVRCLTFNPDGRTLL 243
S V + F+PDG + L
Sbjct: 887 GHLSWVHGVMFSPDGSSFL 905
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 15/216 (6%)
Query: 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPF 112
L + HT + F +A+ A T++++ E + + + H + F
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 675
Query: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT--PDGRWVVSGGEDNTVKLW 170
+ A+ S D +KIWD +HTY H+ VN FT + + +G D +KLW
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW 735
Query: 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-----------FEL 219
DL + + H + F P + LLA+ SAD T++ WD+ + F L
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 795
Query: 220 IGSAGPETSG--VRCLTFNPDGRTLLCGLHESLKVF 253
PE V+C +++ DG ++ + +F
Sbjct: 796 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 831
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 2/172 (1%)
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133
VA G G IK+ +L ++ + GH+ + F G+ S S D+ +++W+ +
Sbjct: 983 VAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1042
Query: 134 GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDF 193
+ + H V R D R ++S D TVK+W++ G++ DF CH+G +
Sbjct: 1043 DYVFL-QAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAI 1100
Query: 194 HPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245
++ SAD+T K W + + VRC F+ DG L G
Sbjct: 1101 SSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATG 1152
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 13/223 (5%)
Query: 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89
+ L++ ED + +W + + L H + L++ + GT+K+W++
Sbjct: 1023 KTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLS-WSFDGTVKVWNVI 1080
Query: 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
+I R T H+ +S F+S S D KIW +H KGH V
Sbjct: 1081 TGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCS 1140
Query: 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF---------KCHEGQIQCIDFHPHEFLL 200
F+ DG + +G ++ +++W+++ G+LLH H G + + F P L
Sbjct: 1141 AFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTL 1200
Query: 201 ATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL 243
SA +K+W++ T + + + ++ + +PD RT +
Sbjct: 1201 V--SAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYV 1241
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 123/291 (42%), Gaps = 20/291 (6%)
Query: 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL-SGHTSGIDSVSFDSSEVLVAAG 77
V C +++V +KV L+ I + + +GH S I F + L
Sbjct: 808 VKCCSWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 865
Query: 78 AASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137
+ ++LW+++ V GH S V F P G F + S D +++W+ KK C +
Sbjct: 866 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET-KKVCKN 924
Query: 138 TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE 197
+ + ++ + F + V++ DN L L AGK E Q+ C PH
Sbjct: 925 SAIVLKQEIDVV-FQENETMVLA--VDNIRGL-QLIAGKTGQIDYLPEAQVSCCCLSPHL 980
Query: 198 FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWE 256
+A G D +K +L + S VR + F DG+TL+ +S ++V++W+
Sbjct: 981 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQ 1040
Query: 257 P-----IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302
++ H + L D +LL S++ + V VW V RIE
Sbjct: 1041 TGDYVFLQAHQETVKDFRLLQD-----SRLLSWSFDGT-VKVWNVITGRIE 1085
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 114/218 (52%), Gaps = 13/218 (5%)
Query: 38 DHKVNLWAIGKPNAILSLSGHTSG--IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95
D+ V LW+ + + L G I SV++ +A G +S ++LWD+++ K +R
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIRFTPD 154
+T H + S+ ++ + +SGS ++ D+R + + T GH++ V +R+ PD
Sbjct: 104 NMTSHSARVGSLSWNSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD 161
Query: 155 GRWVVSGGEDNTVKLWDLTAGK----LLHDFKCHEGQIQCIDFHPHEF-LLAT--GSADR 207
GR + SGG DN V +W G+ L F H+G ++ + + P + +LAT G++DR
Sbjct: 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221
Query: 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245
++ W++ + + SA S V + ++P + L+ G
Sbjct: 222 HIRIWNVCSGACL-SAVDAHSQVCSILWSPHYKELISG 258
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 71/166 (42%), Gaps = 11/166 (6%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLW----AIGKPNAILSLSGHTSGIDSVSF-- 67
HS V L+ R L +GG D+ VN+W G + + + H + +V++
Sbjct: 148 GHSQEVCGLRWA-PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 68 DSSEVLVAAGAASGT-IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS--LDTN 124
S VL G S I++W++ + + H C S+ + P + SG
Sbjct: 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVC-SILWSPHYKELISGHGFAQNQ 265
Query: 125 LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170
L IW + KGHT V ++ +PDG V S D T++LW
Sbjct: 266 LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/245 (20%), Positives = 99/245 (40%), Gaps = 57/245 (23%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86
K L G +V LW + + + +++ H++ + S+S++S ++++G+ SG I
Sbjct: 77 KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGSRSGHIHHH 134
Query: 87 DLEEAKI-VRTLTGHRSNCISVDFHPFGEFFASG-------------------------- 119
D+ A+ V TL+GH + + P G ASG
Sbjct: 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194
Query: 120 -----------------------SLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156
+ D +++IW++ C+ H++ V +I ++P +
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYK 253
Query: 157 WVVSGG--EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214
++SG N + +W + + K H ++ + P +A+ +AD T++ W
Sbjct: 254 ELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW-- 311
Query: 215 ETFEL 219
FEL
Sbjct: 312 RCFEL 316
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 112/267 (41%), Gaps = 29/267 (10%)
Query: 14 AHSSTVNCLKIG-----RKSSRVLVTGGEDHKVNLWAI---------GKPNAILSLSGHT 59
HS V + G + S VL++G D V +W + G P+ +L+GH
Sbjct: 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHK--ALTGHN 76
Query: 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASG 119
+ ++ + + T++LWDL + GH+S SV F P S
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA 136
Query: 120 SLDTNLKIWDI--RKKGCIHTYKGHTRGVNAIRFTPDGR----------WVVSGGEDNTV 167
+ +K+W+I K + H+ V+ +R++P + + S G D +
Sbjct: 137 GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRL 196
Query: 168 KLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET 227
K+W+ T ++ + FK HE + + P+ +ATG D+ + WD+
Sbjct: 197 KVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAG 255
Query: 228 SGVRCLTFNPDGRTLLCGLHESLKVFS 254
S + + FNP + + G + +K+F+
Sbjct: 256 STINQIAFNPKLQWVAVGTDQGVKIFN 282
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 107/243 (44%), Gaps = 31/243 (12%)
Query: 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA 75
+S + CL+ ++TG +D + ++ +L LSGH G+ ++ + +LV+
Sbjct: 122 TSVITCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Query: 76 AGAASGTIKLWDLEEAKIVRTLTGHRSN--CISVDFHPFGEFFASGSLDTNLKIWDIRKK 133
G+ T+++WD+++ GH S C+ + + ++ +GS D L +W + K+
Sbjct: 179 -GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 134 GCI------HTY-----------------KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170
+ H Y +GH V + + G VVSG DNT+ +W
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVW 295
Query: 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV 230
D+ K L+ H +I + + S D T++ WDLE EL+ + T+ V
Sbjct: 296 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355
Query: 231 RCL 233
L
Sbjct: 356 GLL 358
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 26/204 (12%)
Query: 12 FVAHSSTVNCLKI-GRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDS-VSFDS 69
F H+STV CL I K+ + +VTG D+ +++W + K + S+ H D + F +
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES---SVPDHGEEHDYPLVFHT 255
Query: 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129
E E V L GH ++ +V H G SGS D L +WD
Sbjct: 256 PE-----------------ENPYFVGVLRGHMASVRTVSGH--GNIVVSGSYDNTLIVWD 296
Query: 130 IRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQ 189
+ + C++ GHT + + + + + +S D T+++WDL G+L++ + H +
Sbjct: 297 VAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG 356
Query: 190 CIDFHPHEFLLATGSADRTVKFWD 213
+ + L + +AD +++ WD
Sbjct: 357 LLRL--SDKFLVSAAADGSIRGWD 378
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 96 TLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154
TL GH ++ I+ + F + +G+ D ++++D K + GH GV A+++
Sbjct: 116 TLRGHMTSVITCLQFED--NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFL--LATGSADRTVKFW 212
G +VSG D TV++WD+ G H F+ H ++C+D ++ + + TGS D T+ W
Sbjct: 174 GI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 213 DL 214
L
Sbjct: 233 KL 234
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 14/230 (6%)
Query: 33 VTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD-LEEA 91
++G D + LW + GHT + SV+F S + +G+ TIKLW+ L
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 92 KIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
K H V F P S D +K+W++ + GHT +N +
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTV 209
+PDG SGG+D LWDL GK L+ + I + F P+ + L + ++
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPNRYWLCAATGP-SI 279
Query: 210 KFWDLETFELIG---------SAGPETSGVRCLTFNPDGRTLLCGLHESL 250
K WDLE ++ S+ E L ++ DG+TL G ++L
Sbjct: 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 329
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 18/200 (9%)
Query: 73 LVAAGAASGTIKLWDLEEAKI-----VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127
++ + + TI +W L + R L GH V G+F SGS D L++
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD-LTAGKLLHDFKCHEG 186
WD+ + GHT+ V ++ F+ D R +VSG D T+KLW+ L K + H
Sbjct: 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172
Query: 187 QIQCIDFHPHEF--LLATGSADRTVKFWDLETFEL----IGSAGPETS------GVRCLT 234
+ C+ F P+ ++ + D+ VK W+L +L IG G + G C +
Sbjct: 173 WVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS 232
Query: 235 FNPDGRTLLCGLHESLKVFS 254
DG+ +L L+E +++
Sbjct: 233 GGKDGQAMLWDLNEGKHLYT 252
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 7 YKLQEFVAHSSTVNCLKIGRKSSR-VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSV 65
Y +Q+ +HS V+C++ SS ++V+ G D V +W + + GHT +++V
Sbjct: 163 YTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 221
Query: 66 SFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNL 125
+ L A+G G LWDL E K + TL G + I+ ++ + ++
Sbjct: 222 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSI 279
Query: 126 KIWDIRKKGCIH---------TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175
KIWD+ K + + K ++ ++ DG+ + +G DN V++W +T G
Sbjct: 280 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 14/230 (6%)
Query: 33 VTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD-LEEA 91
++G D + LW + GHT + SV+F S + +G+ TIKLW+ L
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 92 KIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
K H V F P S D +K+W++ + GHT +N +
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTV 209
+PDG SGG+D LWDL GK L+ + I + F P+ + L + ++
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINALCFSPNRYWLCAATGP-SI 256
Query: 210 KFWDLETFELIG---------SAGPETSGVRCLTFNPDGRTLLCGLHESL 250
K WDLE ++ S+ E L ++ DG+TL G ++L
Sbjct: 257 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNL 306
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 19/220 (8%)
Query: 54 SLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEAKI-----VRTLTGHRSNCISV 107
+L GH + ++ ++ + + TI +W L + R L GH V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 108 DFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167
G+F SGS D L++WD+ + GHT+ V ++ F+ D R +VSG D T+
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 168 KLWD-LTAGKLLHDFKCHEGQIQCIDFHPHEF--LLATGSADRTVKFWDLETFEL----I 220
KLW+ L K + H + C+ F P+ ++ + D+ VK W+L +L I
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHI 189
Query: 221 GSAGPETS------GVRCLTFNPDGRTLLCGLHESLKVFS 254
G G + G C + DG+ +L L+E +++
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 229
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 7 YKLQEFVAHSSTVNCLKIGRKSSR-VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSV 65
Y +Q+ +HS V+C++ SS ++V+ G D V +W + + GHT +++V
Sbjct: 140 YTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTV 198
Query: 66 SFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNL 125
+ L A+G G LWDL E K + TL G + I+ ++ + ++
Sbjct: 199 TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYWLCAATGPSI 256
Query: 126 KIWDIRKKGCIH---------TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175
KIWD+ K + + K ++ ++ DG+ + +G DN V++W +T G
Sbjct: 257 KIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 106/243 (43%), Gaps = 31/243 (12%)
Query: 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA 75
+S + CL+ ++TG +D + ++ +L LSGH G+ ++ + +LV+
Sbjct: 122 TSVITCLQF---EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVS 178
Query: 76 AGAASGTIKLWDLEEAKIVRTLTGHRSN--CISVDFHPFGEFFASGSLDTNLKIWDIRKK 133
G+ T+++WD+++ GH S C+ + + ++ +GS D L +W + K+
Sbjct: 179 -GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 237
Query: 134 GCI------HTY-----------------KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170
+ H Y +GH V + + G VVSG DNT+ +W
Sbjct: 238 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVW 295
Query: 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV 230
D+ K L+ H +I + + S D T++ WDLE EL + T+ V
Sbjct: 296 DVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALV 355
Query: 231 RCL 233
L
Sbjct: 356 GLL 358
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 26/208 (12%)
Query: 12 FVAHSSTVNCLKI-GRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDS-VSFDS 69
F H+STV CL I K+ + +VTG D+ +++W + K + S+ H D + F +
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES---SVPDHGEEHDYPLVFHT 255
Query: 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129
E E V L GH ++ +V H G SGS D L +WD
Sbjct: 256 PE-----------------ENPYFVGVLRGHXASVRTVSGH--GNIVVSGSYDNTLIVWD 296
Query: 130 IRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQ 189
+ + C++ GHT + + + + + +S D T+++WDL G+L + + H +
Sbjct: 297 VAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVG 356
Query: 190 CIDFHPHEFLLATGSADRTVKFWDLETF 217
+ + L + +AD +++ WD +
Sbjct: 357 LLRL--SDKFLVSAAADGSIRGWDANDY 382
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 96 TLTGHRSNCIS-VDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154
TL GH ++ I+ + F + +G+ D ++++D K + GH GV A+++
Sbjct: 116 TLRGHXTSVITCLQFED--NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG 173
Query: 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFL--LATGSADRTVKFW 212
G +VSG D TV++WD+ G H F+ H ++C+D ++ + + TGS D T+ W
Sbjct: 174 GI-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
Query: 213 DL 214
L
Sbjct: 233 KL 234
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 2/146 (1%)
Query: 32 LVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91
+ + G D + ++ +L + H + +F + + +A + +K+W+
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTG 695
Query: 92 KIVRTLTGH--RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
++V T H + NC A+GS D LK+WD+ +K C +T GHT VN
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHC 755
Query: 150 RFTPDGRWVVSGGEDNTVKLWDLTAG 175
RF+PD + + S D T+KLWD T+
Sbjct: 756 RFSPDDKLLASCSADGTLKLWDATSA 781
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPF 112
L + HT + F +A+ A T++++ E + + + H + F
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD 674
Query: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV--SGGEDNTVKLW 170
F A+ S+D +KIW+ +HTY H+ VN FT ++ +G D +KLW
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLW 734
Query: 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213
DL + + H + F P + LLA+ SAD T+K WD
Sbjct: 735 DLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 2/172 (1%)
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133
+A G +G I++ +L +I ++ H+ + F + S S D +++W+ +
Sbjct: 982 IAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLD 1041
Query: 134 GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDF 193
CI +GH V R + R ++S D TVK+W++ G DF CH+G + D
Sbjct: 1042 KCIFL-RGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDI 1099
Query: 194 HPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245
++ SAD+T K W + + VRC F+ D L G
Sbjct: 1100 SHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATG 1151
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 104 CISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163
C S D G+ AS D L+++ + K H V F+ D R++ +
Sbjct: 628 CFSED----GQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSV 683
Query: 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDF--HPHEFLLATGSADRTVKFWDLETFELIG 221
D VK+W+ G+L+H + H Q+ C F H LLATGS+D +K WDL E
Sbjct: 684 DKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRN 743
Query: 222 SAGPETSGVRCLTFNPDGRTLL-CGLHESLKVF 253
+ T+ V F+PD + L C +LK++
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 32/231 (13%)
Query: 15 HSSTVNCLKIGRKSSRVLV-TGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
HS VNC S +L+ TG D + LW + + ++ GHT+ ++ F + L
Sbjct: 704 HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKL 763
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133
+A+ +A GT+KLWD A +++ +FF +L+ + ++ K
Sbjct: 764 LASCSADGTLKLWDATSANERKSIN-------------VKQFFL--NLEDPQEDMEVIVK 808
Query: 134 GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCID 192
C ++ DG ++ + N + L+D+ LL + H IQ D
Sbjct: 809 CC--------------SWSADGARIMVAAK-NKIFLFDIHTSGLLGEIHTGHHSTIQYCD 853
Query: 193 FHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL 243
F P L + V+ W+ ++ + S V + F+PDG + L
Sbjct: 854 FSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFL 904
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 96/220 (43%), Gaps = 12/220 (5%)
Query: 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89
+ L++ +D ++ +W I L GH + + L++ + GT+K+W++
Sbjct: 1022 KTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRLLS-WSFDGTVKVWNII 1079
Query: 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149
+ H+ +S D F+S S D KIW +H +GH V
Sbjct: 1080 TGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCS 1139
Query: 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLH--------DFKCHEGQIQCIDFHPHEFLLA 201
F+ D + +G ++ +++W+++ G+LLH H G + + F P +L
Sbjct: 1140 AFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI 1199
Query: 202 TGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241
SA +K+W++ T E + + ++ + +PD +T
Sbjct: 1200 --SAGGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKT 1237
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%)
Query: 140 KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFL 199
+ HT V F+ DG+ + S G D T++++ G+ L + K HE ++ C F +
Sbjct: 618 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 200 LATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL 243
+AT S D+ VK W+ T EL+ + + V C F LL
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLL 721
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 104/244 (42%), Gaps = 9/244 (3%)
Query: 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL-SGHTSGIDSVSFDSSEVLVAAG 77
V C +R++V +K+ L+ I + + +GH S I F L
Sbjct: 807 VKCCSWSADGARIMVAAK--NKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVA 864
Query: 78 AASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137
+ ++LW+ + V GH S V F P G F + S D +++W+ KK C +
Sbjct: 865 LSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWET-KKVCKN 923
Query: 138 TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE 197
+ + V+ + F + V++ ++L + G++ D+ E Q+ C PH
Sbjct: 924 SAVMLKQEVDVV-FQENEVMVLAVDHIRRLQLINGRTGQI--DYLT-EAQVSCCCLSPHL 979
Query: 198 FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWE 256
+A G + ++ +L + S V + F D +TL+ ++ ++V++W+
Sbjct: 980 QYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQ 1039
Query: 257 PIRC 260
+C
Sbjct: 1040 LDKC 1043
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 20/225 (8%)
Query: 55 LSGHTSGIDSVSF-DSSEVLVAAGAASGTIKLWDLEEAKIVRTL-----TGHRSNCISVD 108
L+GH S + E + G+ T LWD+ + + +GH ++ +S+
Sbjct: 153 LTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 109 FHPF-GEFFASGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166
+ F SGS DT +++WD+R + TY GH +N+++F PDG+ +G +D T
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272
Query: 167 VKLWDLTAGKLLHDFKCHEGQ-------IQCIDFHPHEFLLATGSADRTVKFWDLETFEL 219
+L+D+ G L + + + + F LL G ++ WD E+
Sbjct: 273 CRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEM 332
Query: 220 IGSAGPETSG----VRCLTFNPDGRTLLCG-LHESLKVFSWEPIR 259
+ + G + + CL + DG L G ++LK++++ R
Sbjct: 333 VLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 95 RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154
RTL GH S+D+ P + S S D L +W+ H K H V F P+
Sbjct: 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPN 119
Query: 155 GRWVVSGGEDNTVKLWDLTAGK-------LLHDFKCHEGQIQCIDFHP-HEFLLATGSAD 206
G+ V GG D+ +++L++ + H+G + P E L TGS D
Sbjct: 120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGD 179
Query: 207 RTVKFWDLETFELIGSAGPE 226
+T WD+ T + I G E
Sbjct: 180 QTCVLWDVTTGQRISIFGSE 199
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 111/268 (41%), Gaps = 30/268 (11%)
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113
+L GH+ + S+ + + + + + G + +W+ ++ + H + F P G
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 114 EFFASGSLDTNLKIWDIRKKG-------CIHTYKGHTRGVNAIRFTPDGRW-VVSGGEDN 165
+ A G LD+ I+++ + GH ++ ++ PD +++G D
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 166 TVKLWDLTAGKLLHDFKC-----HEGQIQCIDFHP-HEFLLATGSADRTVKFWDLE-TFE 218
T LWD+T G+ + F H + + + + + +GS D TV+ WDL T
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 219 LIGSAGPETSGVRCLTFNPDGRTL-------LCGLHE-----SLKVFSWEPIRCHDAVDV 266
+ + + + F PDG+ C L + L+V++ EP R + + +
Sbjct: 241 AVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPI 300
Query: 267 GWSRLSDLNVHEGKLLGCSYNQSCVGVW 294
S ++ G+LL Y+ VW
Sbjct: 301 VTSVAFSIS---GRLLFAGYSNGDCYVW 325
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 79/204 (38%), Gaps = 40/204 (19%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-KPNAILSLSGHTSGIDSVSFDSSEV 72
H++ V L I ++ + ++G D V LW + A+ + GH I+SV F
Sbjct: 203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ 262
Query: 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK 132
G+ GT +L+D+ TGH+ + + D L I
Sbjct: 263 RFGTGSDDGTCRLFDMR--------TGHQLQVYNRE---------PDRNDNELPI----- 300
Query: 133 KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF----KCHEGQI 188
V ++ F+ GR + +G + +WD +++ + HEG+I
Sbjct: 301 -------------VTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRI 347
Query: 189 QCIDFHPHEFLLATGSADRTVKFW 212
C+ L TGS D+ +K W
Sbjct: 348 SCLGLSSDGSALCTGSWDKNLKIW 371
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 135 CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFH 194
C T +GH+ V ++ +TP+ W+VS +D + +W+ + H K H + F
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 195 PHEFLLATGSADRTVKFWDLET 216
P+ +A G D ++L +
Sbjct: 118 PNGQSVACGGLDSACSIFNLSS 139
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 88/206 (42%), Gaps = 21/206 (10%)
Query: 15 HSSTVNCLKIGR--------KSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHTSG 61
H+ +N L G +R + TGG+ V +W I P + L +
Sbjct: 41 HARQINTLNHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNY 99
Query: 62 IDSVSFDSSEVLVAAGAASGTIKLWDL--EEAKIVRTLTGHRSNCISVDFHPFGEFFASG 119
I S + G + T+ +WDL +I LT C ++ P + S
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159
Query: 120 SLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL- 178
D N+ +WD+ + + ++GHT G + I + DG + +GG DNTV+ WDL G+ L
Sbjct: 160 CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Query: 179 -HDFKCHEGQIQCIDFHPHEFLLATG 203
HDF QI + + P LA G
Sbjct: 220 QHDFT---SQIFSLGYCPTGEWLAVG 242
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 11/190 (5%)
Query: 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88
S+V + D + +W + + GHT G + + + G T++ WDL
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 89 EEAKIVRTLTGH--RSNCISVDFHPFGEFFASGSLDTNLKIWDIRK--KGCIHTYKGHTR 144
E R L H S S+ + P GE+ A G +N+++ + K K +H H
Sbjct: 213 REG---RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL---HES 266
Query: 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS 204
V +++F G+W VS G+DN + W G + K + C D + + TGS
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSC-DISVDDKYIVTGS 325
Query: 205 ADRTVKFWDL 214
D+ +++
Sbjct: 326 GDKKATVYEV 335
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 70/179 (39%), Gaps = 14/179 (7%)
Query: 81 GTIKLWDL----EEAKIVRTLTGHRSNCI-SVDFHPFGEFFASGSLDTNLKIWDI----- 130
G +K+WD+ ++ + + +R N I S P G G + L IWD+
Sbjct: 72 GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP 131
Query: 131 RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQC 190
R K A+ +PD + S D + +WDL L+ F+ H C
Sbjct: 132 RIKA---ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188
Query: 191 IDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES 249
ID L TG D TV+ WDL + TS + L + P G L G+ S
Sbjct: 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESS 246
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 28 SSRVLVTGGEDHKVNLWAIGKPNA----ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83
S +L TG D K+ L ++ + +L + H I SV++ L+AAG+ T+
Sbjct: 23 SQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82
Query: 84 KLWDLEEA-------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-- 134
+W EE+ ++ + GH + V + G + A+ S D ++ IW+ + G
Sbjct: 83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE 142
Query: 135 --CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC------HEG 186
CI + H++ V + + P + S D+TV++W D++C HEG
Sbjct: 143 YECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW----KDYDDDWECVAVLNGHEG 198
Query: 187 QIQCIDFHPHE--FLLATGSADRTVKFW 212
+ DF E F L +GS D TV+ W
Sbjct: 199 TVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 23/181 (12%)
Query: 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL--EEAKIVRTL--TGHRSNCI 105
N I SL + I SFD S+ ++A G+ IKL + ++ ++ L T H+
Sbjct: 5 NLIKSLKLYKEKI--WSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR 62
Query: 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--------GHTRGVNAIRFTPDGRW 157
SV + P A+GS D+ + IW +++ T++ GH V + ++ DG +
Sbjct: 63 SVAWRPHTSLLAAGSFDSTVSIW-AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYY 121
Query: 158 VVSGGEDNTVKLWDLTAGKLLHDFKC------HEGQIQCIDFHPHEFLLATGSADRTVKF 211
+ + D +V +W+ +++C H ++ + +HP E LLA+ S D TV+
Sbjct: 122 LATCSRDKSVWIWETDESG--EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRI 179
Query: 212 W 212
W
Sbjct: 180 W 180
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 93/212 (43%), Gaps = 24/212 (11%)
Query: 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC----IHTYKGHTRGVNA 148
++++L ++ S DF A+GS D +K+ ++ + H + + +
Sbjct: 6 LIKSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRS 63
Query: 149 IRFTPDGRWVVSGGEDNTVKLW--DLTAGK-----LLHDFKCHEGQIQCIDFHPHEFLLA 201
+ + P + +G D+TV +W + +A + LL + HE +++ + + + LA
Sbjct: 64 VAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 202 TGSADRTVKFWDL----ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 257
T S D++V W+ E +E I + V+ + ++P L ++ +
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD-------DT 176
Query: 258 IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS 289
+R D W ++ LN HEG + ++++
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKT 208
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 13/195 (6%)
Query: 30 RVLVTGGEDHKVN---LWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86
+L+ GG+D +N L+A + + +L GH + S+SF +V +G+ T K+W
Sbjct: 72 ELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG--VVISGSWDKTAKVW 129
Query: 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKG-HTR 144
+E +V L H ++ F E F + S D +K+W K I T+ G H
Sbjct: 130 --KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHND 185
Query: 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS 204
V + DG +S D +KL D G +L ++ HE + CI P+ +++ G
Sbjct: 186 VVRHLAVVDDGH-FISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE 244
Query: 205 ADRTVKFWDLETFEL 219
DRTV+ W E L
Sbjct: 245 -DRTVRIWSKENGSL 258
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 52/227 (22%)
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK---IWDI 130
VA+ + GT++LW ++ + + + SV + E G DT + ++
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXINGVPLFAT 91
Query: 131 RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQI-- 188
+ ++T GH V ++ F DG V+SG D T K+W G L+++ + H +
Sbjct: 92 SGEDPLYTLIGHQGNVCSLSF-QDGV-VISGSWDKTAKVW--KEGSLVYNLQAHNASVWD 147
Query: 189 -QCIDFHPHEFLLATGSADRTVKFW----------------------------------- 212
+ + F ++FL T SAD+T+K W
Sbjct: 148 AKVVSFSENKFL--TASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDG 205
Query: 213 -----DLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFS 254
D T +++ + S V C+ P+G + CG +++++S
Sbjct: 206 LIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWS 252
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 16/195 (8%)
Query: 31 VLVTGGEDHKVNLWAIGKPNAILS--LS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLW- 86
+L + G D ++ +W + I LS GH + V++ +A+ + T +W
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89
Query: 87 -DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG---CIHTYKGH 142
+ ++ + V TL GH + SV + P G A+ S D ++ +W++ ++ C+ H
Sbjct: 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149
Query: 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLW-----DLTAGKLLHDFKCHEGQIQCIDFHPHE 197
T+ V + + P + S D+TVKL+ D L HE + + F P
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG---HESTVWSLAFDPSG 206
Query: 198 FLLATGSADRTVKFW 212
LA+ S DRTV+ W
Sbjct: 207 QRLASCSDDRTVRIW 221
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 16/153 (10%)
Query: 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAIRFTPDGRWV 158
S C + ++P G AS D ++IW I +GH R V + ++P G ++
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76
Query: 159 VSGGEDNTVKLWDLTAGKLLHDFKC------HEGQIQCIDFHPHEFLLATGSADRTVKFW 212
S D T +W K DF+C HE +++ + + P LLAT S D++V W
Sbjct: 77 ASASFDATTCIWK----KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Query: 213 DL---ETFELIGSAGPETSGVRCLTFNPDGRTL 242
++ + +E + T V+ + ++P L
Sbjct: 133 EVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 94/197 (47%), Gaps = 11/197 (5%)
Query: 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH--RSNCISVDFH 110
L+ + ++ + SV + ++ G +G + ++D+E +RT+ GH R C+S + H
Sbjct: 128 LAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRH 187
Query: 111 PFGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169
+SGS + D+R I T +GH+ V + + DG + SGG DN V++
Sbjct: 188 ----VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI 243
Query: 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEF-LLAT--GSADRTVKFWDLETFELIGSAGPE 226
WD + H ++ + + P + LLAT G+ D+ + FW+ T + +
Sbjct: 244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-A 302
Query: 227 TSGVRCLTFNPDGRTLL 243
S V L ++P + ++
Sbjct: 303 GSQVTSLIWSPHSKEIM 319
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 66/176 (37%), Gaps = 9/176 (5%)
Query: 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVS 66
+++ HSS V C R L +GG D+ V +W + + H + + +V+
Sbjct: 208 HQIGTLQGHSSEV-CGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA 266
Query: 67 F---DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFAS--GSL 121
+ S+ + G I W+ V T+ S S+ + P + S G
Sbjct: 267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVTSLIWSPHSKEIMSTHGFP 325
Query: 122 DTNLKIWDIRKKGCIHT--YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175
D NL IW G H V +PDGR + + D +K W + G
Sbjct: 326 DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 97 LTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG 155
LTG SVDF P F SGS D + I++ T+ HT+ V+++R+ PDG
Sbjct: 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 156 RWVVSGGEDNTVKLWDLTAGKLLHDFK-------CHEGQIQCIDFHPHEFLLATGSADRT 208
S G D T+ L++ G F+ H G + + + P +A+ SAD+T
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 209 VKFWDLETFEL 219
+K W++ T ++
Sbjct: 263 IKIWNVATLKV 273
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 15/139 (10%)
Query: 111 PFGEFFASGSLDTNLKIWDIRK-----KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED- 164
P G + ASG + N++IWD + K I + G V I + + + + + GE
Sbjct: 69 PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP---VKDISWDSESKRIAAVGEGR 125
Query: 165 ---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELI 220
V L+D G + + +DF P F + +GS D TV ++ F+
Sbjct: 126 ERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK 183
Query: 221 GSAGPETSGVRCLTFNPDG 239
+ G T V + +NPDG
Sbjct: 184 STFGEHTKFVHSVRYNPDG 202
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 79/174 (45%), Gaps = 14/174 (8%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLSGHTSGIDSVS 66
KL E V S +C+ + V V GG+D KV+++ + G + + H + I SV+
Sbjct: 441 KLTE-VPISYNSSCVALSNDKQFVAV-GGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 498
Query: 67 FDSSEVLVAAGAASGTIKLWDLE---EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
F ++ + A S + + + E + T H + V + P A+GSLD
Sbjct: 499 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 558
Query: 124 NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW-----VVSGGEDNTVKLWDL 172
++ +W++ K + +G +A+ W +VS G+D+ +K W++
Sbjct: 559 SVIVWNMNKPS---DHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 72/195 (36%), Gaps = 52/195 (26%)
Query: 32 LVTGGEDHKVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90
+++G +D+ V ++ G P S G HT + SV ++ L A+ GTI L++ +
Sbjct: 163 IISGSDDNTVAIFE-GPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221
Query: 91 AKIVRTL-------TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI------------- 130
H + + + P G AS S D +KIW++
Sbjct: 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT 281
Query: 131 ----RKKGCIHTYK--------------------------GHTRGVNAIRFTPDGRWVVS 160
++ G I T + GH + + A+ + DG+ + S
Sbjct: 282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFS 341
Query: 161 GGEDNTVKLWDLTAG 175
+ + WD++ G
Sbjct: 342 ADAEGHINSWDISTG 356
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC--IHTYKGHTRGVN 147
K+ + S+C+++ +F A G D+ + ++ + + T H +
Sbjct: 439 HGKLTEVPISYNSSCVALSNDK--QFVAVGGQDSKVHVYKLSGASVSEVKTIV-HPAEIT 495
Query: 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAG-KLLH--DFKCHEGQIQCIDFHPHEFLLATGS 204
++ F+ +G ++V+ + V + + +L H + H ++ C+ + P LATGS
Sbjct: 496 SVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS 555
Query: 205 ADRTVKFWDLE 215
D +V W++
Sbjct: 556 LDNSVIVWNMN 566
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKI 127
+ LVA G ++L DL+ L GHR ++V + P + A+ S D+ +K+
Sbjct: 154 TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKL 213
Query: 128 WDIRK-KGCIHTYK---------------GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171
WD+R+ GC+ T H VN + FT DG +++ G DN ++LW+
Sbjct: 214 WDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
Query: 172 LTAGK 176
+ G+
Sbjct: 274 SSNGE 278
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 18/175 (10%)
Query: 58 HTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEEAKIVRTLTG-------------HRSN 103
H GI+++ + E + +G + G I L+DLE + T HR +
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 104 CISVDFHPFGE-FFASGSLDTNLKIWDIR--KKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160
+V ++P F S S D LK+WD + + ++ + + V
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAV 161
Query: 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDL 214
G V+L DL +G H + H +I + + P ++++LAT SAD VK WD+
Sbjct: 162 GTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 15/92 (16%)
Query: 142 HTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-------------HEGQ 187
H G+N + P +GR+++SGG D + L+DL + C H
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS 101
Query: 188 IQCIDFHPHEF-LLATGSADRTVKFWDLETFE 218
++ + ++PH+ + + S D+T+K WD T +
Sbjct: 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ 133
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 82/203 (40%), Gaps = 51/203 (25%)
Query: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKL 85
SS VLV H G+ N L L GH +S++S S L++A + T+ L
Sbjct: 148 SSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSA-SDDHTVCL 206
Query: 86 WDL----EEAKIVRT---LTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIH 137
WD+ +E KIV TGH + V +H E F S + D L IWD R
Sbjct: 207 WDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSN---- 262
Query: 138 TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH- 196
T K H H ++ C+ F+P+
Sbjct: 263 -----------------------------------TTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 197 EFLLATGSADRTVKFWDLETFEL 219
EF+LATGSAD+TV WDL +L
Sbjct: 288 EFILATGSADKTVALWDLRNLKL 310
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 61/176 (34%), Gaps = 59/176 (33%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
AH++ VNCL S +L TG D V L
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVAL------------------------------ 302
Query: 74 VAAGAASGTIKLWDLEEAKI-VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIR 131
WDL K+ + T H+ V + P E AS D L +WD+
Sbjct: 303 ------------WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 132 KKG--------------CIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDL 172
K G + + GHT ++ + P+ WV+ S EDN +++W +
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI--------------GKPNAIL 53
KL F +H + + + +L + G D ++N+W + G P +
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLF 370
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTI-KLWDLEE 90
GHT+ I S++ +E V + I ++W + E
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 82/203 (40%), Gaps = 51/203 (25%)
Query: 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKL 85
SS VLV H G+ N L L GH +S++S S L++A + T+ L
Sbjct: 148 SSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSA-SDDHTVCL 206
Query: 86 WDL----EEAKIVRT---LTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIH 137
WD+ +E KIV TGH + V +H E F S + D L IWD R
Sbjct: 207 WDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSN---- 262
Query: 138 TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH- 196
T K H H ++ C+ F+P+
Sbjct: 263 -----------------------------------TTSKPSHLVDAHTAEVNCLSFNPYS 287
Query: 197 EFLLATGSADRTVKFWDLETFEL 219
EF+LATGSAD+TV WDL +L
Sbjct: 288 EFILATGSADKTVALWDLRNLKL 310
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 59/174 (33%), Gaps = 59/174 (33%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
AH++ VNCL S +L TG D V L
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVAL------------------------------ 302
Query: 74 VAAGAASGTIKLWDLEEAKI-VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIR 131
WDL K+ + T H+ V + P E AS D L +WD+
Sbjct: 303 ------------WDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Query: 132 KKG--------------CIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLW 170
K G + + GHT ++ + P+ WV+ S EDN ++W
Sbjct: 351 KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 15/98 (15%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI--------------GKPNAIL 53
KL F +H + + + +L + G D ++N+W + G P +
Sbjct: 311 KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLF 370
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTI-KLWDLEE 90
GHT+ I S++ +E V + I ++W E
Sbjct: 371 IHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAE 408
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 104/226 (46%), Gaps = 24/226 (10%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----PNAILSLS-GHT-SGI 62
+ F HSS+V +K K VL +GG + ++ +W + K P+ L+ G + S +
Sbjct: 106 MARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSV 165
Query: 63 D---SVSFDSSEVLVAAGAASGTI-KLWDLEEAKIVRTL------TGHRSNCISVDFHPF 112
D S++++ S V A A S +WDL+ K V L +G + V++HP
Sbjct: 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK 225
Query: 113 GE---FFASGS-LDTNLKIWDIRKKGC-IHTY-KGHTRGVNAIRFT-PDGRWVVSGGEDN 165
A+GS D ++ IWD+R + T +GH +G+ ++ + D ++S G DN
Sbjct: 226 NSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Query: 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF-LLATGSADRTVK 210
TV LW+ + + L F F P L A S D ++
Sbjct: 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 50 NAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDL----EEAKIVRTLTGHRS-- 102
N++ S H+S + +V F++ + ++A+G +G I +WD+ E LT +S
Sbjct: 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS 163
Query: 103 ---NCISVDFH-PFGEFFASGSLDTNLKIWDIR-KKGCIH-TYKGHTRGV----NAIRFT 152
IS+ ++ FAS IWD++ KK IH +Y G+ + + +
Sbjct: 164 SVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223
Query: 153 PDG--RWVVSGGEDN--TVKLWDL-TAGKLLHDF-KCHEGQIQCIDF-HPHEFLLATGSA 205
P R + G DN ++ +WDL A L + H+ I +D+ H E LL +
Sbjct: 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLC 244
D TV W+ E+ E + + F P+ L
Sbjct: 284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA 322
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 10/185 (5%)
Query: 72 VLVAAGAASGTIKLWDLEEAK--IVRTLTGHRSNCI--SVDFHPFGEFFASGSLDTNLKI 127
+LVA+ SG ++LW+L+E + IV + + I +V G SGS D +K+
Sbjct: 96 ILVASD--SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153
Query: 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV-VSGGEDNTVKLWDLTAGKLLHDFKCH-E 185
WD+ ++ + +Y+ H V + +P V +S EDN + LWD K C
Sbjct: 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP 213
Query: 186 GQIQC-IDFHPHEF-LLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL 243
G + + +HP + + G + TV D ++ + S+ + V L F+P L
Sbjct: 214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFL 273
Query: 244 CGLHE 248
L E
Sbjct: 274 ASLSE 278
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF- 67
L + AH++ V C+ V ++ ED+++ LW P + G S
Sbjct: 162 LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA 221
Query: 68 ---DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDT 123
SEV V G +GT+ L D + V + H + F P F AS S D
Sbjct: 222 WHPQQSEVFV-FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDC 280
Query: 124 NLKIWD 129
+L + D
Sbjct: 281 SLAVLD 286
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 77 GAASGTIKLWDLEEAKIVRTL-TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC 135
G G IK+ D + R + H S + F P GE S S D LKIW ++
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 170
Query: 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE 185
T GH V I GR V+S D T++LW+ G +H F E
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 220
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 57 GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116
H S I + F S + + + +K+W +++ RTL GHR+ + G
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 117 ASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAI 149
S SLD +++W+ IHT+ + GVN+I
Sbjct: 194 LSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI 229
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/187 (19%), Positives = 77/187 (41%), Gaps = 31/187 (16%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
AH S + LK S L++ +D ++ +W++ + +L GH + + ++
Sbjct: 134 AHVSEITKLKF-FPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRS-----NCIS-------------------VDF 109
V + + GTI+LW+ + T + N I+ ++F
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 252
Query: 110 HPFGEFFASGSLDTNLKIWDI-RKKGCIHTYKGHTRGVNAIRFTPDG---RWVVSGGEDN 165
+G++ +G + + + ++ K+ I T N++ T DG ++ +G E+
Sbjct: 253 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL--TVDGNNANYIYAGYENG 310
Query: 166 TVKLWDL 172
+ WDL
Sbjct: 311 MLAQWDL 317
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 47/110 (42%), Gaps = 2/110 (1%)
Query: 77 GAASGTIKLWDLEEAKIVRTL-TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC 135
G G IK+ D + R + H S + F P GE S S D LKIW ++
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN 173
Query: 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE 185
T GH V I GR V+S D T++LW+ G +H F E
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKE 223
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Query: 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA 117
H S I + F S + + + +K+W +++ RTL GHR+ + G
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL 197
Query: 118 SGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAI 149
S SLD +++W+ IHT+ + GVN+I
Sbjct: 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSI 232
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/187 (19%), Positives = 77/187 (41%), Gaps = 31/187 (16%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL 73
AH S + LK S L++ +D ++ +W++ + +L GH + + ++
Sbjct: 137 AHVSEITKLKF-FPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRS-----NCIS-------------------VDF 109
V + + GTI+LW+ + T + N I+ ++F
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF 255
Query: 110 HPFGEFFASGSLDTNLKIWDI-RKKGCIHTYKGHTRGVNAIRFTPDG---RWVVSGGEDN 165
+G++ +G + + + ++ K+ I T N++ T DG ++ +G E+
Sbjct: 256 GTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL--TVDGNNANYIYAGYENG 313
Query: 166 TVKLWDL 172
+ WDL
Sbjct: 314 MLAQWDL 320
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 42 NLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR 101
NL+ G + L+GH + V ++ L+ + + + +W + + TL GH
Sbjct: 15 NLYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHT 74
Query: 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160
S+D F ++ +GS D ++K+WD+ C+ T+K V + F+P G + ++
Sbjct: 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVP-VKRVEFSPCGNYFLA 132
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 87/215 (40%), Gaps = 24/215 (11%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86
K +L + +D ++W + +L GHT I S+ D G+A +IKLW
Sbjct: 42 KEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101
Query: 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK------IWDIRKKGCIH--- 137
D+ + V T V+F P G +F + LD +K I++I + H
Sbjct: 102 DVSNGQCVATWKS-PVPVKRVEFSPCGNYFLA-ILDNVMKNPGSINIYEIERDSATHELT 159
Query: 138 -----------TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHE 185
T++G ++ G+++++G +D + +D++ + + HE
Sbjct: 160 KVSEEPIHKIITHEG-LDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE 218
Query: 186 GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220
I + F P T S D D+ T +++
Sbjct: 219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL 253
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 113 GEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170
G F +GS +++ W+++ G + HT V + ++ DG V + D T K+W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 171 DLTAGKLLHDFKCHEGQIQCIDF--HPHEFLLATGSADRTVKFWD 213
DL++ + + H+ ++ I + P+ + TGS D+T+KFWD
Sbjct: 114 DLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 18 TVNCLKIGRKS--SRVLVTGGEDHKVNLWAIGKPNAILSLSG--HTSGIDSVSFDSSEVL 73
++ CL + L+ G + V W + + + HT + V +
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSK 100
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDF--HPFGEFFASGSLDTNLKIWDIR 131
V + T K+WDL + ++ + H + ++ + P +GS D LK WD R
Sbjct: 101 VFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 74 VAAGAASGTIKLWDL---EEAKIVRTLTGHRSNCISVDFHPFG--EFFASGSLDTNLKIW 128
VA G+ G I LW+ ++ ++ + G + + F+P +F+AS S++ ++
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYAS-SMEGTTRLQ 192
Query: 129 DIRKKGCIHTYKGHTRGVN----AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
D KG I + +N ++ + R VV+G V L ++ GK L + + H
Sbjct: 193 DF--KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMH 249
Query: 185 EGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAG-----PETSGVRCLTFNPD 238
+ ++ + +P ++ LAT S D+TVK WDL ++ G A P V F+PD
Sbjct: 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLR--QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 239 GRTLLCGLHES-LKVFS 254
G LL +S ++V+S
Sbjct: 308 GARLLTTDQKSEIRVYS 324
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 74 VAAGAASGTIKLWDL---EEAKIVRTLTGHRSNCISVDFHPFG--EFFASGSLDTNLKIW 128
VA G+ G I LW+ ++ ++ + G + + F+P +F+AS S++ ++
Sbjct: 136 VAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYAS-SMEGTTRLQ 193
Query: 129 DIRKKGCIHTYKGHTRGVN----AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
D KG I + +N ++ + R VV+G V L ++ GK L + + H
Sbjct: 194 DF--KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMH 250
Query: 185 EGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAG-----PETSGVRCLTFNPD 238
+ ++ + +P ++ LAT S D+TVK WDL ++ G A P V F+PD
Sbjct: 251 KKKVTHVALNPCCDWFLATASVDQTVKIWDLR--QVRGKASFLYSLPHRHPVNAACFSPD 308
Query: 239 GRTLLCGLHES-LKVFS 254
G LL +S ++V+S
Sbjct: 309 GARLLTTDQKSEIRVYS 325
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 95/197 (48%), Gaps = 23/197 (11%)
Query: 74 VAAGAASGTIKLWDL---EEAKIVRTLTGHRSNCISVDFHPFG--EFFASGSLDTNLKIW 128
VA G+ G I LW+ ++ ++ + G + + F+P +F+AS S++ ++
Sbjct: 135 VAVGSKGGDIMLWNFGIKDKPTFIKGI-GAGGSITGLKFNPLNTNQFYAS-SMEGTTRLQ 192
Query: 129 DIRKKGCIHTYKGHTRGVN----AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184
D KG I + +N ++ + R VV+G V L ++ GK L + + H
Sbjct: 193 DF--KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMH 249
Query: 185 EGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAG-----PETSGVRCLTFNPD 238
+ ++ + +P ++ LAT S D+TVK WDL ++ G A P V F+PD
Sbjct: 250 KKKVTHVALNPCCDWFLATASVDQTVKIWDLR--QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 239 GRTLLCGLHES-LKVFS 254
G LL +S ++V+S
Sbjct: 308 GARLLTTDQKSEIRVYS 324
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 9/148 (6%)
Query: 32 LVTGGEDHKVNLWAIGKPNAILSL-SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE- 89
+VT GED ++NL+ A+ ++ + +S + +V+F + ++ + G +K+WD
Sbjct: 163 IVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSI-GQLKIWDFRQ 221
Query: 90 ---EAKIVRTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGC-IHTYKGHTR 144
E + +LTG R VD HP + A+G D L IWD+R+ + K H
Sbjct: 222 QGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEA 281
Query: 145 GVNAIRFTP-DGRWVVSGGEDNTVKLWD 171
+ + F P + + + ED ++ WD
Sbjct: 282 EMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 81 GTIKLWDLEEAKIVRTLTGHRSNCI-SVDFHPFGEFFASGSLDTNLKIWDIRKKGC---- 135
G I L+ + + VRT+ S+ + +V F E S+ LKIWD R++G
Sbjct: 170 GRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSIG-QLKIWDFRQQGNEPSQ 228
Query: 136 IHTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDF 193
I + G ++ + P+ + VV +GG+D + +WD+ G + + K HE ++ + F
Sbjct: 229 ILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHF 288
Query: 194 HP-HEFLLATGSADRTVKFWDLET 216
HP + L T S D ++ WD T
Sbjct: 289 HPSNPEHLFTCSEDGSLWHWDAST 312
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 65 VSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI-SVDFHPF----------G 113
+S SE +AAG G I L+DL+ ++ + R++ I ++ + P
Sbjct: 494 ISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553
Query: 114 EFFASGSLDTNLKIWDI-RKKGCIHTYKGHTRGVNAIRF-TPDGRWVVSGGEDNTVKLWD 171
+ A+GSLDTN+ I+ + R I H GVN + + TP +VS G D +K W+
Sbjct: 554 DLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWN 611
Query: 172 L 172
+
Sbjct: 612 V 612
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL-----SGHTSGIDSVSFDS 69
S V ++ S ++T G D K++ + GK L GI ++S+
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFD-GKSGEFLKYIEDDQEPVQGGIFALSWLD 263
Query: 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNC----ISVDFHPFGEFFASGSLDTNL 125
S+ GA TI++WD+ +K V+ T + + V G S SLD L
Sbjct: 264 SQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII-SLSLDGTL 321
Query: 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170
+++ + T GH +G+ A+ P ++SG D + W
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIXEW 362
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG-------SADRTVKFWDL 214
G D T+++WD+T K + + + Q+ + ++ATG S D T+ F++L
Sbjct: 271 GADATIRVWDVTTSKCVQKWTLDKQQLG----NQQVGVVATGNGRIISLSLDGTLNFYEL 326
Query: 215 ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 261
E++ + G+ LT NP L+ G ++ ++ W H
Sbjct: 327 GHDEVLKTISGHNKGITALTVNP----LISGSYDG-RIXEWSSSSXH 368
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 65 VSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI-SVDFHPF----------G 113
+S SE +AAG G I L+DL+ ++ + R++ I ++ + P
Sbjct: 494 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553
Query: 114 EFFASGSLDTNLKIWDI-RKKGCIHTYKGHTRGVNAIRF-TPDGRWVVSGGEDNTVKLWD 171
+ A+GSLDTN+ I+ + R I H GVN + + TP +VS G D +K W+
Sbjct: 554 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST--LVSSGADACIKRWN 611
Query: 172 L 172
+
Sbjct: 612 V 612
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL-----SGHTSGIDSVSFDS 69
S V ++ S ++T G D K++ + GK L GI ++S+
Sbjct: 205 QGSFVRDVEFSPDSGEFVITVGSDRKISCFD-GKSGEFLKYIEDDQEPVQGGIFALSWLD 263
Query: 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNC----ISVDFHPFGEFFASGSLDTNL 125
S+ GA TI++WD+ +K V+ T + + V G S SLD L
Sbjct: 264 SQKFATVGA-DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII-SLSLDGTL 321
Query: 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170
+++ + T GH +G+ A+ P ++SG D + W
Sbjct: 322 NFYELGHDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEW 362
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG-------SADRTVKFWDL 214
G D T+++WD+T K + + + Q+ + ++ATG S D T+ F++L
Sbjct: 271 GADATIRVWDVTTSKCVQKWTLDKQQLG----NQQVGVVATGNGRIISLSLDGTLNFYEL 326
Query: 215 ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 261
E++ + G+ LT NP L+ G ++ ++ W H
Sbjct: 327 GHDEVLKTISGHNKGITALTVNP----LISGSYDG-RIMEWSSSSMH 368
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 92 KIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIH-------TYKGHT 143
K V + GH + + + + P + ASGS D + +W+I G + T +GHT
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHT 131
Query: 144 RGVNAIRFTPDGRWV-VSGGEDNTVKLWDLTAGKLLHDF--KCHEGQIQCIDFHPHEFLL 200
+ V + + P + V +S G DN + +WD+ G + H I +D+ L+
Sbjct: 132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI 191
Query: 201 ATGSADRTVK 210
T D+ V+
Sbjct: 192 CTSCRDKRVR 201
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 21/176 (11%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-------SLSGHTSGIDSVS 66
H++ V + + V+ +G ED V +W I +L +L GHT + V+
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 67 FDSS--EVLVAAGAASGTIKLWDLEEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLD 122
+ + VL++AG I +WD+ V TL H SVD+ G + D
Sbjct: 139 WHPTAQNVLLSAG-CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 123 TNLKIWDIRKKGCI----HTYKGHTRGVNAIRFTPDGRWVVSG---GEDNTVKLWD 171
+++ + RK + ++G TR V+A+ F +G+ + +G + V LWD
Sbjct: 198 KRVRVIEPRKGTVVAEKDRPHEG-TRPVHAV-FVSEGKILTTGFSRMSERQVALWD 251
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 141 GHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKLLHDFK-------CHEGQIQCID 192
GHT V I + P V+ SG ED TV +W++ G L+ + H ++ +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 193 FHP-HEFLLATGSADRTVKFWDLETFELIGSAGPET 227
+HP + +L + D + WD+ T + + GP+
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV 174
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 125 LKIWDIRKKGCIHTYK----GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD 180
+++W+I +K + K H V + DG VSGG+D +VK+WDL+ +L
Sbjct: 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKS 176
Query: 181 FKCHEGQIQCIDFHPHE--FLLATGSADRTVKFWD 213
+ H ++ C+ P + L+ G R + WD
Sbjct: 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGR-ILLWD 210
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 76/172 (44%), Gaps = 6/172 (3%)
Query: 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSV-SFDSSEVL 73
H V L + ++ V+GG+D V +W + + + S + H+S ++ V + + +
Sbjct: 138 HDDIVKTLSVFSDGTQA-VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196
Query: 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI--SVDFHP-FGEFFASGSLDTNLKIWDI 130
+ G I LWD + K + S+ I SV +HP + FA G N+ + +I
Sbjct: 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256
Query: 131 RKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGGEDNTVKLWDLTAGKLLHDF 181
+ T H++ + + ++ ++ S ED TV + D ++ D
Sbjct: 257 KNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL 308
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI--DSVS 66
L+ + AHSS VNC+ + ++ GED ++ LW KP + S SV+
Sbjct: 174 LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVT 233
Query: 67 FD-SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNC--ISVDFHPFGEFFASGSLDT 123
+ + A G +G + L +++ +T H N ++ +H F AS S D
Sbjct: 234 WHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS-SPFLASISEDC 292
Query: 124 NLKIWD 129
+ + D
Sbjct: 293 TVAVLD 298
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 9/123 (7%)
Query: 143 TRGVNAIRFTPDGRWVVSGG-----EDNTVKLWDLTAGK--LLHDFKC--HEGQIQCIDF 193
T GV D WV G + V+LW++ + L++ F H+ ++ +
Sbjct: 88 TAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSV 147
Query: 194 HPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVF 253
+G D +VK WDL ++ S +S V C+ P T+ E ++
Sbjct: 148 FSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRIL 207
Query: 254 SWE 256
W+
Sbjct: 208 LWD 210
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLK 126
++S L+A + G I++ + + ++ GH + + FHP S S D L+
Sbjct: 118 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 177
Query: 127 IWDIRKKGCIHTY---KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
+W+I+ + + +GH V + + G ++S G D+++KLW + + ++++ K
Sbjct: 178 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK- 236
Query: 184 HEGQIQCIDFHPHE 197
+ D++P++
Sbjct: 237 -----ESYDYNPNK 245
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 57 GHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTL---TGHRSNCISVDFHPF 112
GH + I+ + F + L+ + + ++LW+++ +V GHR +S D+
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154
GE S +D +LK+W I K R +NAI+ + D
Sbjct: 209 GEKIMSCGMDHSLKLWRINSK----------RMMNAIKESYD 240
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLK 126
++S L+A + G I++ + + ++ GH + + FHP S S D L+
Sbjct: 82 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 141
Query: 127 IWDIRKKGCIHTY---KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
+W+I+ + + +GH V + + G ++S G D+++KLW + + ++++ K
Sbjct: 142 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK- 200
Query: 184 HEGQIQCIDFHPHE 197
+ D++P++
Sbjct: 201 -----ESYDYNPNK 209
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 57 GHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTL---TGHRSNCISVDFHPF 112
GH + I+ + F + L+ + + ++LW+++ +V GHR +S D+
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154
GE S +D +LK+W I K R +NAI+ + D
Sbjct: 173 GEKIMSCGMDHSLKLWRINSK----------RMMNAIKESYD 204
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLK 126
++S L+A + G I++ + + ++ GH + + FHP S S D L+
Sbjct: 81 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 140
Query: 127 IWDIRKKGCIHTY---KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
+W+I+ + + +GH V + + G ++S G D+++KLW + + ++++ K
Sbjct: 141 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK- 199
Query: 184 HEGQIQCIDFHPHE 197
+ D++P++
Sbjct: 200 -----ESYDYNPNK 208
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 57 GHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTL---TGHRSNCISVDFHPF 112
GH + I+ + F + L+ + + ++LW+++ +V GHR +S D+
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154
GE S +D +LK+W I K R +NAI+ + D
Sbjct: 172 GEKIMSCGMDHSLKLWRINSK----------RMMNAIKESYD 203
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLK 126
++S L+A + G I++ + + ++ GH + + FHP S S D L+
Sbjct: 77 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 136
Query: 127 IWDIRKKGCIHTY---KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
+W+I+ + + +GH V + + G ++S G D+++KLW + + ++++ K
Sbjct: 137 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK- 195
Query: 184 HEGQIQCIDFHPHE 197
+ D++P++
Sbjct: 196 -----ESYDYNPNK 204
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 57 GHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTL---TGHRSNCISVDFHPF 112
GH + I+ + F + L+ + + ++LW+++ +V GHR +S D+
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154
GE S +D +LK+W I K R +NAI+ + D
Sbjct: 168 GEKIMSCGMDHSLKLWRINSK----------RMMNAIKESYD 199
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLK 126
++S L+A + G I++ + + ++ GH + + FHP S S D L+
Sbjct: 81 NTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALR 140
Query: 127 IWDIRKKGCIHTY---KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
+W+I+ + + +GH V + + G ++S G D+++KLW + + ++++ K
Sbjct: 141 LWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIK- 199
Query: 184 HEGQIQCIDFHPHE 197
+ D++P++
Sbjct: 200 -----ESYDYNPNK 208
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 57 GHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTL---TGHRSNCISVDFHPF 112
GH + I+ + F + L+ + + ++LW+++ +V GHR +S D+
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154
GE S +D +LK+W I K R +NAI+ + D
Sbjct: 172 GEKIMSCGMDHSLKLWRINSK----------RMMNAIKESYD 203
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 21/176 (11%)
Query: 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-------SLSGHTSGIDSVS 66
H++ V + + V+ +G ED V +W I +L +L GHT + V+
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 67 FDSS--EVLVAAGAASGTIKLWDLEEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLD 122
+ + VL++AG I +WD+ V TL H SVD+ G + D
Sbjct: 139 WHPTAQNVLLSAG-XDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 123 TNLKIWDIRKKGCI----HTYKGHTRGVNAIRFTPDGRWVVSG---GEDNTVKLWD 171
+++ + RK + ++G TR V+A+ F +G+ + +G + V LWD
Sbjct: 198 KRVRVIEPRKGTVVAEKDRPHEG-TRPVHAV-FVSEGKILTTGFSRMSERQVALWD 251
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 141 GHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKLLHDFK-------CHEGQIQCID 192
GHT V I + P V+ SG ED TV +W++ G L+ + H ++ +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 193 FHP--HEFLLATGSADRTVKFWDLETFELIGSAGPE 226
+HP LL+ G D + WD+ T + + GP+
Sbjct: 139 WHPTAQNVLLSAGX-DNVILVWDVGTGAAVLTLGPD 173
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 38/214 (17%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV--LVAAGAASGTIK 84
K+ ++ GE HK+ I +L+GH + V + + ++A+ + G +
Sbjct: 31 KTIKIFEVEGETHKL----------IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 85 LWDLEEAKI--VRTLTGHRSNCISVDF--HPFGEFFASGSLDTNLKIWDIRKKGCIH--T 138
+W E + + H ++ SV + H +G S D + + + ++ G
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 139 YKGHTRGVNAIRFTP-----DG--------RWVVSGGEDNTVKLW----DLTAGKLLHDF 181
H GVN+ + P DG R V+GG DN VK+W D L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 182 KCHEGQIQCIDFHPHEFL---LATGSADRTVKFW 212
+ H ++ + + P L LA+ S DRT W
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 38/214 (17%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV--LVAAGAASGTIK 84
K+ ++ GE HK+ I +L+GH + V + + ++A+ + G +
Sbjct: 33 KTIKIFEVEGETHKL----------IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 85 LWDLEEAKI--VRTLTGHRSNCISVDF--HPFGEFFASGSLDTNLKIWDIRKKGCIH--T 138
+W E + + H ++ SV + H +G S D + + + ++ G
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
Query: 139 YKGHTRGVNAIRFTP-----DG--------RWVVSGGEDNTVKLW----DLTAGKLLHDF 181
H GVN+ + P DG R V+GG DN VK+W D L
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202
Query: 182 KCHEGQIQCIDFHPHEFL---LATGSADRTVKFW 212
+ H ++ + + P L LA+ S DRT W
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 38/214 (17%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE--VLVAAGAASGTIK 84
K+ ++ GE HK+ I +L+GH + V + + ++A+ + G +
Sbjct: 31 KTIKIFEVEGETHKL----------IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 85 LWDLEEAKI--VRTLTGHRSNCISVDF--HPFGEFFASGSLDTNLKIWDIRKKGCIH--T 138
+W E + + H ++ SV + H +G S D + + + ++ G
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 139 YKGHTRGVNAIRFTP-----DG--------RWVVSGGEDNTVKLW----DLTAGKLLHDF 181
H GVN+ + P DG R V+GG DN VK+W D L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 182 KCHEGQIQCIDFHPHEFL---LATGSADRTVKFW 212
+ H ++ + + P L LA+ S DRT W
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 38/214 (17%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE--VLVAAGAASGTIK 84
K+ ++ GE HK+ I +L+GH + V + + ++A+ + G +
Sbjct: 31 KTIKIFEVEGETHKL----------IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 85 LWDLEEAKI--VRTLTGHRSNCISVDF--HPFGEFFASGSLDTNLKIWDIRKKGCIH--T 138
+W E + + H ++ SV + H +G S D + + + ++ G
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII 140
Query: 139 YKGHTRGVNAIRFTP-----DG--------RWVVSGGEDNTVKLW----DLTAGKLLHDF 181
H GVN+ + P DG R V+GG DN VK+W D L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 182 KCHEGQIQCIDFHPHEFL---LATGSADRTVKFW 212
+ H ++ + + P L +A+ S DRT W
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS 120
G+D D + ++ G I ++ + E L GH ++F+ + S S
Sbjct: 209 GVDVEWVDDDKFVIPG--PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266
Query: 121 LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL 178
D L+IW + + GH++ + + + D + V+S D +V+LW L LL
Sbjct: 267 DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVRLWSLKQNTLL 323
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 33/227 (14%)
Query: 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDSVSFDSSEVLV 74
++ V CL + + VTG E+ ++ LW K A+L+ L+ H + I SV ++ +
Sbjct: 108 TNQVTCLAWSHDGNSI-VTGVENGELRLW--NKTGALLNVLNFHRAPIVSVKWNKDGTHI 164
Query: 75 AAGAASGTIKLWDLEEAKIVRTL----TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130
+ LW++ +++ TG S I+ + H GSL +++ D
Sbjct: 165 ISMDVENVTILWNVISGTVMQHFELKETGGSS--INAENHS-----GDGSLGVDVEWVDD 217
Query: 131 RK------KGCIHTYK-----------GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173
K KG I Y+ GH ++ + F + ++S +D T+++W
Sbjct: 218 DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277
Query: 174 AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220
G + F H I + + +++ S D +V+ W L+ L+
Sbjct: 278 NGNSQNCFYGHSQSIVSASWVGDDKVISC-SMDGSVRLWSLKQNTLL 323
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 113 GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172
G +G + L++W+ + ++ H + ++++ DG ++S +N LW++
Sbjct: 120 GNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNV 178
Query: 173 TAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG 224
+G ++ F+ E I+ H GS V++ D + F + G G
Sbjct: 179 ISGTVMQHFELKETGGSSINAENHS---GDGSLGVDVEWVDDDKFVIPGPKG 227
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 55 LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114
L GH I + F+ + L+ + + GT+++W GH + +S + +
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 115 FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172
S S+D ++++W +++ + + A R + DG+ D V ++DL
Sbjct: 303 VI-SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 210 KFWDL-------ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHD 262
K+W L F L S+G T+ V CL ++ DG +++ G+ E+ ++ W
Sbjct: 84 KYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV-ENGELRLWNKTG--- 139
Query: 263 AVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301
+ L+ LN H ++ +N+ + +D+ +
Sbjct: 140 ------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV 172
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLAT 202
T V + ++ DG +V+G E+ ++LW+ T G LL+ H I + ++ + +
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWNKT-GALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 203 GSADRTVKFWD------LETFELIGSAG 224
+ W+ ++ FEL + G
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGG 194
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 12/103 (11%)
Query: 182 KCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSA---GPETSGVRCLTFNP 237
K H+ ++ +F+P ++L+AT S D TVK WDL + S P V FNP
Sbjct: 200 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 259
Query: 238 DGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK 280
T L + IR + + D WS+ + +H +
Sbjct: 260 TDSTKLLTTDQR------NEIRVYSSYD--WSKPDQIIIHPHR 294
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 100 HRSNCISVDFHPFGEFF-ASGSLDTNLKIWDIRKKGCIHTYKG---HTRGVNAIRFTP-D 154
H++ +F+P ++ A+ S+D +K+WD+R ++Y H + VNA F P D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 155 GRWVVSGGEDNTVKL-----WDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATG---- 203
+++ + N +++ W ++H + H I+ +HP L+ G
Sbjct: 262 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT-WHPMYDLIVAGRYPD 320
Query: 204 -----SADRTVKFWDLETFELIGSA-GPETSGVRCLT-FNPDGRTLLCGLHESLKVFSWE 256
+ RT+ +D + L+ P +G+ L F+P G L G+ ++ +++ E
Sbjct: 321 DQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRE 380
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 182 KCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSA---GPETSGVRCLTFNP 237
K H+ ++ +F+P ++L+AT S D TVK WDL + S P V FNP
Sbjct: 201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260
Query: 238 DGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVH 277
T L + IR + + D WS+ + +H
Sbjct: 261 TDSTKLLTTDQR------NEIRVYSSYD--WSKPDQIIIH 292
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 81/180 (45%), Gaps = 24/180 (13%)
Query: 100 HRSNCISVDFHPFGEFF-ASGSLDTNLKIWDIRKKGCIHTYKG---HTRGVNAIRFTP-D 154
H++ +F+P ++ A+ S+D +K+WD+R ++Y H + VNA F P D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 155 GRWVVSGGEDNTVKL-----WDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATG---- 203
+++ + N +++ W ++H + H I+ +HP L+ G
Sbjct: 263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT-WHPMYDLIVAGRYPD 321
Query: 204 -----SADRTVKFWDLETFELIGSA-GPETSGVRCLT-FNPDGRTLLCGLHESLKVFSWE 256
+ RT+ +D + L+ P +G+ L F+P G L G+ ++ +++ E
Sbjct: 322 DQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRE 381
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 85/214 (39%), Gaps = 38/214 (17%)
Query: 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE--VLVAAGAASGTIK 84
K+ ++ GE HK+ I +L+GH + V + + ++A+ + G +
Sbjct: 31 KTIKIFEVEGETHKL----------IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 85 LWDLEEAKI--VRTLTGHRSNCISVDF--HPFGEFFASGSLDTNLKIWDIRKKGCIH--T 138
+W E + + H ++ SV + H +G S D + + + ++ G
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPII 140
Query: 139 YKGHTRGVNAIRFTP-----DG--------RWVVSGGEDNTVKLW----DLTAGKLLHDF 181
H GVN+ + P DG R V+GG DN VK+W D L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 182 KCHEGQIQCIDFHPHEFL---LATGSADRTVKFW 212
+ H ++ + + P L A+ S DRT W
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIW 234
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 36/153 (23%)
Query: 45 AIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA--------GAASGTIKLWDLEEA--KIV 94
A KP I + G + FD V +A +G I+L++++ K++
Sbjct: 3 AFEKPQIIAHIQ---KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL 59
Query: 95 RTLTGHRSNCISVDFHPFG------EFFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVN 147
R + + + FG + A+G NL IW++ +++ KGH +N
Sbjct: 60 REIEKAKP----IKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN 115
Query: 148 AIRF---------TPDGRWVVSGGEDNTVKLWD 171
AI P+ +V+G D TVK+WD
Sbjct: 116 AIDGIGGLGIGEGAPE---IVTGSRDGTVKVWD 145
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 62/142 (43%), Gaps = 18/142 (12%)
Query: 8 KLQEFVAHSSTVNCLKIGRKS--SRVLVTGGEDHKVNLWAIGKPN-AILSLSGHTSGIDS 64
KL + + + C G S R L TG +++W + P + S+ GH I++
Sbjct: 57 KLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINA 116
Query: 65 VSFDSSEVL------VAAGAASGTIKLWDLEE-----AKIVRTLTGHRSNCISVDF-HPF 112
+ + + G+ GT+K+WD + A + ++ +C +V F + +
Sbjct: 117 IDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY 176
Query: 113 GE---FFASGSLDTNLKIWDIR 131
+ +G + ++K++D+R
Sbjct: 177 NQEERVVCAGYDNGDIKLFDLR 198
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLW----DLTAGKLLHDFKCHEGQIQCIDFHPH 196
GH V+ + + GR V + D +K++ D + +L ++ H+ I ID+
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 66
Query: 197 EF--LLATGSADRTVKFWD 213
E+ ++A+ S D+TVK W+
Sbjct: 67 EYGRIIASASYDKTVKLWE 85
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG----CIHTYKGHTRGVNAIRF-T 152
+GH V + +G A+ S D ++K++ + K +++ H + AI + +
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 153 PD-GRWVVSGGEDNTVKLWD 171
P+ GR + S D TVKLW+
Sbjct: 66 PEYGRIIASASYDKTVKLWE 85
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 47 GKPNAILSLSGHTSGIDSVSFDSS----EVLVAAGAASGTIKLWDLEE------AKIVRT 96
GK + L GH S I S+S+ S L+A G G I+++ + E ++ T
Sbjct: 200 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT 259
Query: 97 LTGHRSNCISVDFHPFGEFFAS----GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT 152
+ N VD G ++ L +NL++ + + H V ++ +
Sbjct: 260 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV------ELLSEHDDHNGEVWSVSWN 313
Query: 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
G + S G+D V+LW T ++FKC
Sbjct: 314 LTGTILSSAGDDGKVRLWKATYS---NEFKC 341
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLW----DLTAGKLLHDFKCHEGQIQCIDFHPH 196
GH V+ + + GR V + D +K++ D + +L ++ H+ I ID+
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 197 EF--LLATGSADRTVKFWD 213
E+ ++A+ S D+TVK W+
Sbjct: 69 EYGRIIASASYDKTVKLWE 87
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG----CIHTYKGHTRGVNAIRF-T 152
+GH V + +G A+ S D ++K++ + K +++ H + AI + +
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 153 PD-GRWVVSGGEDNTVKLWD 171
P+ GR + S D TVKLW+
Sbjct: 68 PEYGRIIASASYDKTVKLWE 87
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 47 GKPNAILSLSGHTSGIDSVSFDSS----EVLVAAGAASGTIKLWDLEE------AKIVRT 96
GK + L GH S I S+S+ S L+A G G I+++ + E ++ T
Sbjct: 202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT 261
Query: 97 LTGHRSNCISVDFHPFGEFFAS----GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT 152
+ N VD G ++ L +NL++ + + H V ++ +
Sbjct: 262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQV------ELLSEHDDHNGEVWSVSWN 315
Query: 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
G + S G+D V+LW T ++FKC
Sbjct: 316 LTGTILSSAGDDGKVRLWKATYS---NEFKC 343
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 98/263 (37%), Gaps = 42/263 (15%)
Query: 66 SFDSSEVLVAAGAASGTIKLW--DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123
+F+S A+ ++L+ D K RT + H VD+ P + S D
Sbjct: 18 AFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR 77
Query: 124 NLKIWDIRKKGCIHTYKGH------TRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAG 175
N +++ R G T+K R +R++P D V SG +V ++
Sbjct: 78 NAYVYEKRPDG---TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND 134
Query: 176 KLL--HDFKCHEGQIQCIDFHPHEFLLATGSADRT----------------VKFWDLE-T 216
+ H + I +D+HP+ LLA G ADR W
Sbjct: 135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLP 194
Query: 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW-----EPIRCHDAVDVGWSRL 271
F + + P V + F+P G L H+S ++ +P R + V S+L
Sbjct: 195 FNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA--LITVKLSQL 252
Query: 272 ---SDLNVHEGKLLGCSYNQSCV 291
S L +E ++ YN S +
Sbjct: 253 PLRSLLWANESAIVAAGYNYSPI 275
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLW----DLTAGKLLHDFKCHEGQIQCIDFHPH 196
GH V+ + + GR V + D +K++ D + +L ++ H+ I ID+
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASP 68
Query: 197 EF--LLATGSADRTVKFWD 213
E+ ++A+ S D+TVK W+
Sbjct: 69 EYGRIIASASYDKTVKLWE 87
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG----CIHTYKGHTRGVNAIRF-T 152
+GH V + +G A+ S D ++K++ + K +++ H + AI + +
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 153 PD-GRWVVSGGEDNTVKLWD 171
P+ GR + S D TVKLW+
Sbjct: 68 PEYGRIIASASYDKTVKLWE 87
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 23/151 (15%)
Query: 47 GKPNAILSLSGHTSGIDSVSFDSS----EVLVAAGAASGTIKLWDLEE------AKIVRT 96
GK + L GH S I S+S+ S L+A G G I+++ + E ++ T
Sbjct: 202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLT 261
Query: 97 LTGHRSNCISVDFHPFGEFFAS----GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT 152
+ N VD G ++ L +NL++ + + H V ++ +
Sbjct: 262 NSNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQV------ELLSEHDDHNGEVWSVSWN 315
Query: 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183
G + S G+D V+LW T ++FKC
Sbjct: 316 LTGTILSSAGDDGKVRLWKATYS---NEFKC 343
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 112 FGEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTV 167
+G A+ S D ++KI+D+R G I +GH V + + G + S D V
Sbjct: 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 168 KLWDLTAGKL--LHDFKCHEGQIQCIDFHPHEF--LLATGSADRTVKF 211
+W G H+ H+ + + + PH++ +LA GS+D +
Sbjct: 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 45/196 (22%)
Query: 56 SGHTSGIDSVSFDSSE--VLVAAGAASGTIKLWDLE---EAKIVRTLTGHRSNCISVDF- 109
+GH S ++SV + + +++A G++ G I L + ++ + H C +V +
Sbjct: 100 AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWA 159
Query: 110 ----------HPFGE------FFASGSLDTNLKIWDIRKKGCI---HTYKGHTRGVNAIR 150
HP G+ FASG D +K+W + G + H+ V +
Sbjct: 160 PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVA 219
Query: 151 FTP--------------DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH 196
+ P DGR + +D + W + KLLH F + + +
Sbjct: 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTW---SPKLLHKFN---DVVWHVSWSIT 273
Query: 197 EFLLATGSADRTVKFW 212
+LA D V W
Sbjct: 274 ANILAVSGGDNKVTLW 289
>pdb|3PQH|A Chain A, Crystal Structure Of The C-Terminal Fragment Of The
Bacteriophage Phi92 Membrane-Piercing Protein Gp138
pdb|3PQH|B Chain B, Crystal Structure Of The C-Terminal Fragment Of The
Bacteriophage Phi92 Membrane-Piercing Protein Gp138
Length = 127
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 133 KGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162
+G TYKG T +N + TPDGR SGG
Sbjct: 70 QGGTMTYKGGTVNLNGLTITPDGRMTDSGG 99
>pdb|3PQI|A Chain A, Crystal Structure Of The Bacteriophage Phi92
Membrane-Piercing Protein Gp138
Length = 247
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 133 KGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162
+G TYKG T +N + TPDGR SGG
Sbjct: 190 QGGTMTYKGGTVNLNGLTITPDGRMTDSGG 219
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL---TAGKLLHDFKCHEGQIQCID 192
+H K H V I + PD +V+ G D +W L T L + + +C+
Sbjct: 45 VHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA-RCVR 103
Query: 193 FHPHEFLLATGSADRTV 209
+ P+E A GS R +
Sbjct: 104 WAPNEKKFAVGSGSRVI 120
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE--TFELIGSAGPETSGVRCLTF 235
+H+ K H GQ+ ID+ P + T DR W L+ T++ RC+ +
Sbjct: 45 VHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104
Query: 236 NPDGRTLLCG 245
P+ + G
Sbjct: 105 APNEKKFAVG 114
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI----GKPNAILSLSGHTSGID 63
++ E H+ V + S+R+ VT G D +W + KP ++ +
Sbjct: 44 QVHELKEHNGQVTGIDWAPDSNRI-VTCGTDRNAYVWTLKGRTWKPTLVILRINRAA--R 100
Query: 64 SVSFDSSEVLVAAGAASGTIKLWDLEEAK---IVRTLTGH-RSNCISVDFHPFGEFFASG 119
V + +E A G+ S I + E+ + + + RS +S+D+HP A+G
Sbjct: 101 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 160
Query: 120 SLDTNLKI 127
S D +I
Sbjct: 161 SCDFKCRI 168
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL---TAGKLLHDFKCHEGQIQCID 192
+H K H V + + PD +V+ G D +W L T L + + +C+
Sbjct: 45 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAA-RCVR 103
Query: 193 FHPHEFLLATGSADRTV 209
+ P+E A GS R +
Sbjct: 104 WAPNEKKFAVGSGSRVI 120
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE--TFELIGSAGPETSGVRCLTF 235
+H+ K H GQ+ +D+ P + T DR W L+ T++ RC+ +
Sbjct: 45 VHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW 104
Query: 236 NPDGRTLLCG 245
P+ + G
Sbjct: 105 APNEKKFAVG 114
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 11/128 (8%)
Query: 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI----GKPNAILSLSGHTSGID 63
++ E H+ V + S+R+ VT G D +W + KP ++ +
Sbjct: 44 QVHELKEHNGQVTGVDWAPDSNRI-VTCGTDRNAYVWTLKGRTWKPTLVILRINRAA--R 100
Query: 64 SVSFDSSEVLVAAGAASGTIKLWDLEEAK---IVRTLTGH-RSNCISVDFHPFGEFFASG 119
V + +E A G+ S I + E+ + + + RS +S+D+HP A+G
Sbjct: 101 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 160
Query: 120 SLDTNLKI 127
S D +I
Sbjct: 161 SCDFKCRI 168
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLT------------ 98
S+ +++ I SV F L+A S G I L++ E + + +L+
Sbjct: 238 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 297
Query: 99 -GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
H S +S+ F+ GE S D L+ WD++ K I T H
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 16/105 (15%)
Query: 54 SLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLT------------ 98
S+ +++ I SV F L+A S G I L++ E + + +L+
Sbjct: 228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 287
Query: 99 -GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH 142
H S +S+ F+ GE S D L+ WD++ K I T H
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 332
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-KCHEGQIQCIDFHPHEFLLATGS 204
VN+I F+P +++ + G D + W+L K + +F K +E + + + +L +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKIACSDNILCLAT 311
Query: 205 ADRTVK 210
+D T K
Sbjct: 312 SDDTFK 317
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-KCHEGQIQCIDFHPHEFLLATGS 204
VN+I F+P +++ + G D + W+L K + +F K +E + + + +L +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKIACSDNILCLAT 311
Query: 205 ADRTVK 210
+D T K
Sbjct: 312 SDDTFK 317
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-KCHEGQIQCIDFHPHEFLLATGS 204
VN+I F+P +++ + G D + W+L K + +F K +E + + + +L +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV--VKIACSDNILCLAT 311
Query: 205 ADRTVK 210
+D T K
Sbjct: 312 SDDTFK 317
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-KCHEGQIQCIDFHPHEFLLATGS 204
VN+I F+P +++ + G D + W+L K + +F K +E + I + LAT
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT-- 311
Query: 205 ADRTVK 210
+D T K
Sbjct: 312 SDDTFK 317
>pdb|1TDZ|A Chain A, Crystal Structure Complex Between The Lactococcus Lactis
Fpg (Mutm) And A Fapy-Dg Containing Dna
Length = 272
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 738 HLSISLDILLKLVRTFGSMI--YSAISASTSVGVDIEAEQRI-ERCNRCFIELEKVK 791
H SI ++IL K ++ GS I YSA+ ++ + +++ + E+C+RC E++K+K
Sbjct: 202 HDSI-IEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYGKTGEKCSRCGAEIQKIK 257
>pdb|1PJI|A Chain A, Crystal Structure Of Wild Type Lactococcus Lactis Fpg
Complexed To A 1,3 Propanediol Containing Dna
pdb|1PM5|A Chain A, Crystal Structure Of Wild Type Lactococcus Lactis Fpg
Complexed To A Tetrahydrofuran Containing Dna
pdb|1XC8|A Chain A, Crystal Structure Complex Between The Wild-Type
Lactococcus Lactis Fpg (Mutm) And A Fapy-Dg Containing
Dna
pdb|3C58|A Chain A, Crystal Structure Of A Complex Between The Wild-Type
Lactococcus Lactis Fpg (Mutm) And A N7-Benzyl-Fapy-Dg
Containing Dna
pdb|2XZF|A Chain A, Crystal Structure Of A Complex Between The Wild-Type
Lactococcus Lactis Fpg (Mutm) And An Oxidized Pyrimidine
Containing Dna At 293k
pdb|2XZU|A Chain A, Crystal Structure Of A Complex Between The Wild-Type
Lactococcus Lactis Fpg (Mutm) And An Oxidized Pyrimidine
Containing Dna At 310k
Length = 271
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 738 HLSISLDILLKLVRTFGSMI--YSAISASTSVGVDIEAEQRI-ERCNRCFIELEKVK 791
H SI ++IL K ++ GS I YSA+ ++ + +++ + E+C+RC E++K+K
Sbjct: 201 HDSI-IEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYGKTGEKCSRCGAEIQKIK 256
>pdb|1NNJ|A Chain A, Crystal Structure Complex Between The Lactococcus Lactis
Fpg And An Abasic Site Containing Dna
pdb|1PJJ|A Chain A, Complex Between The Lactococcus Lactis Fpg And An Abasic
Site Containing Dna
Length = 271
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 4/57 (7%)
Query: 738 HLSISLDILLKLVRTFGSMI--YSAISASTSVGVDIEAEQRI-ERCNRCFIELEKVK 791
H SI ++IL K ++ GS I YSA+ ++ + +++ + E+C+RC E++K+K
Sbjct: 201 HDSI-IEILQKAIKLGGSSIRTYSALGSTGKMQNELQVYGKTGEKCSRCGAEIQKIK 256
>pdb|1KFV|A Chain A, Crystal Structure Of Lactococcus Lactis
Formamido-Pyrimidine Dna Glycosylase (Alias Fpg Or Mutm)
Non Covalently Bound To An Ap Site Containing Dna.
pdb|1KFV|B Chain B, Crystal Structure Of Lactococcus Lactis
Formamido-Pyrimidine Dna Glycosylase (Alias Fpg Or Mutm)
Non Covalently Bound To An Ap Site Containing Dna
Length = 271
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 738 HLSISLDILLKLVRTFGSMI--YSAISASTSVGVDIEAEQRI-ERCNRCFIELEKVK 791
H SI ++IL K ++ GS I YSA+ ++ +++ + E+C+RC E++K+K
Sbjct: 201 HDSI-IEILQKAIKLGGSSIRTYSALGSTGKXQNELQVYGKTGEKCSRCGAEIQKIK 256
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 46 IGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93
IG ++ +G T ID F ++ V G+ +GTI WD E K+
Sbjct: 501 IGHVGPTMTKAGQTITIDGRGFGTTSGQVLFGSTAGTIVSWDDTEVKV 548
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 46 IGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93
IG ++ +G T ID F ++ V G+ +GTI WD E K+
Sbjct: 501 IGHVGPTMTKAGQTITIDGRGFGTTSGQVLFGSTAGTIVSWDDTEVKV 548
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,173,567
Number of Sequences: 62578
Number of extensions: 864731
Number of successful extensions: 2734
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 443
length of query: 818
length of database: 14,973,337
effective HSP length: 107
effective length of query: 711
effective length of database: 8,277,491
effective search space: 5885296101
effective search space used: 5885296101
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)