Query 003459
Match_columns 818
No_of_seqs 792 out of 3360
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 23:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0267 Microtubule severing p 100.0 6.8E-89 1.5E-93 751.7 39.6 774 1-815 8-808 (825)
2 PF13925 Katanin_con80: con80 100.0 1.7E-48 3.7E-53 383.4 13.9 160 656-815 1-164 (164)
3 KOG0271 Notchless-like WD40 re 100.0 3.2E-40 6.9E-45 343.5 26.4 303 10-321 109-456 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-39 3.7E-44 342.5 24.2 282 13-295 172-458 (459)
5 KOG0271 Notchless-like WD40 re 100.0 7.1E-38 1.5E-42 326.0 25.1 288 6-295 147-479 (480)
6 KOG0286 G-protein beta subunit 100.0 4.4E-36 9.6E-41 304.0 34.5 284 10-295 49-343 (343)
7 KOG0279 G protein beta subunit 100.0 8.3E-36 1.8E-40 300.6 33.7 290 6-297 5-313 (315)
8 KOG0272 U4/U6 small nuclear ri 100.0 2.7E-37 5.9E-42 325.8 19.8 249 6-254 207-458 (459)
9 cd00200 WD40 WD40 domain, foun 100.0 6.9E-33 1.5E-37 289.6 37.8 285 10-295 3-289 (289)
10 KOG0295 WD40 repeat-containing 100.0 4.4E-34 9.6E-39 296.8 24.0 288 8-296 100-405 (406)
11 KOG0285 Pleiotropic regulator 100.0 1.8E-33 3.8E-38 291.1 25.3 287 10-299 145-441 (460)
12 KOG0263 Transcription initiati 100.0 6E-33 1.3E-37 312.9 28.5 255 6-261 368-654 (707)
13 KOG0279 G protein beta subunit 100.0 3.8E-32 8.2E-37 274.2 28.7 249 5-256 52-313 (315)
14 KOG0273 Beta-transducin family 100.0 5.8E-32 1.3E-36 288.7 31.1 278 16-297 235-523 (524)
15 KOG0315 G-protein beta subunit 100.0 1.8E-31 3.8E-36 265.2 28.6 279 28-308 9-299 (311)
16 KOG0263 Transcription initiati 100.0 3.7E-32 8E-37 306.6 25.5 209 7-216 442-650 (707)
17 KOG0266 WD40 repeat-containing 100.0 5.6E-31 1.2E-35 302.1 35.5 287 11-298 153-455 (456)
18 KOG0282 mRNA splicing factor [ 100.0 2.2E-32 4.8E-37 293.1 18.8 287 8-295 206-503 (503)
19 KOG0286 G-protein beta subunit 100.0 1.4E-30 3E-35 264.2 29.8 247 6-254 87-343 (343)
20 KOG0645 WD40 repeat protein [G 100.0 7.7E-30 1.7E-34 256.6 34.9 287 5-297 3-311 (312)
21 KOG0273 Beta-transducin family 100.0 1.8E-30 3.8E-35 277.4 28.3 295 14-310 176-495 (524)
22 KOG0284 Polyadenylation factor 100.0 8.6E-32 1.9E-36 283.0 16.4 278 16-295 96-378 (464)
23 KOG0296 Angio-associated migra 100.0 9.8E-30 2.1E-34 264.7 30.7 287 8-297 56-398 (399)
24 KOG0265 U5 snRNP-specific prot 100.0 5.5E-30 1.2E-34 260.9 28.0 286 8-295 39-336 (338)
25 KOG0315 G-protein beta subunit 100.0 1.5E-29 3.2E-34 251.6 30.0 263 5-270 29-302 (311)
26 KOG0318 WD40 repeat stress pro 100.0 2.4E-29 5.3E-34 271.5 33.6 286 11-297 185-602 (603)
27 PLN00181 protein SPA1-RELATED; 100.0 7.4E-29 1.6E-33 303.8 41.4 282 11-296 478-792 (793)
28 KOG0291 WD40-repeat-containing 100.0 3.7E-29 8E-34 279.2 34.7 294 8-303 299-618 (893)
29 KOG0291 WD40-repeat-containing 100.0 5.7E-29 1.2E-33 277.7 36.1 289 13-302 262-555 (893)
30 KOG0276 Vesicle coat complex C 100.0 4.4E-30 9.5E-35 281.3 26.7 294 11-308 8-307 (794)
31 KOG0318 WD40 repeat stress pro 100.0 1.3E-28 2.7E-33 266.0 35.7 292 9-300 140-563 (603)
32 KOG0285 Pleiotropic regulator 100.0 5.7E-30 1.2E-34 265.1 22.8 251 51-301 143-393 (460)
33 KOG0284 Polyadenylation factor 100.0 3.7E-31 8.1E-36 278.3 13.9 242 12-255 134-379 (464)
34 KOG0292 Vesicle coat complex C 100.0 3.7E-29 8.1E-34 282.2 28.7 284 8-306 43-357 (1202)
35 KOG0292 Vesicle coat complex C 100.0 3.3E-29 7.3E-34 282.6 27.9 293 10-303 3-327 (1202)
36 KOG0281 Beta-TrCP (transducin 100.0 1.3E-30 2.9E-35 268.5 15.1 273 15-301 196-481 (499)
37 cd00200 WD40 WD40 domain, foun 100.0 7.2E-28 1.6E-32 251.7 34.5 246 8-254 43-289 (289)
38 KOG0316 Conserved WD40 repeat- 100.0 2E-28 4.3E-33 241.7 26.3 283 7-295 8-297 (307)
39 KOG0266 WD40 repeat-containing 100.0 1.4E-28 3.1E-33 282.2 29.5 247 8-255 195-453 (456)
40 KOG0319 WD40-repeat-containing 100.0 1.4E-28 3E-33 274.9 27.7 292 8-300 315-622 (775)
41 KOG0295 WD40 repeat-containing 100.0 4.8E-29 1E-33 259.4 22.0 245 9-254 143-404 (406)
42 KOG0643 Translation initiation 100.0 1.1E-27 2.4E-32 240.4 25.1 286 11-299 5-319 (327)
43 KOG0276 Vesicle coat complex C 100.0 6.3E-28 1.4E-32 264.5 25.3 254 4-258 43-300 (794)
44 KOG0293 WD40 repeat-containing 100.0 2.8E-28 6.1E-33 256.5 21.7 286 9-297 217-513 (519)
45 KOG0319 WD40-repeat-containing 100.0 5.8E-28 1.3E-32 269.8 23.9 307 4-310 135-590 (775)
46 KOG0278 Serine/threonine kinas 100.0 5.6E-28 1.2E-32 240.2 18.6 289 10-302 8-302 (334)
47 KOG0275 Conserved WD40 repeat- 100.0 2.5E-28 5.4E-33 249.5 16.1 280 14-295 211-507 (508)
48 KOG0274 Cdc4 and related F-box 100.0 1.6E-26 3.6E-31 266.0 32.4 280 15-305 207-490 (537)
49 KOG0283 WD40 repeat-containing 100.0 4.3E-27 9.2E-32 267.9 25.3 249 6-258 256-578 (712)
50 KOG0306 WD40-repeat-containing 100.0 1.7E-26 3.7E-31 257.9 29.2 284 10-298 367-665 (888)
51 KOG0296 Angio-associated migra 100.0 2.1E-26 4.5E-31 240.0 26.8 245 8-255 98-397 (399)
52 PLN00181 protein SPA1-RELATED; 100.0 8.3E-26 1.8E-30 277.0 36.6 239 15-255 531-792 (793)
53 KOG0313 Microtubule binding pr 100.0 2.3E-26 4.9E-31 240.6 26.4 277 14-296 103-417 (423)
54 KOG0265 U5 snRNP-specific prot 100.0 1.2E-26 2.5E-31 236.7 23.5 262 51-313 39-312 (338)
55 KOG0316 Conserved WD40 repeat- 100.0 2.2E-26 4.8E-31 227.3 24.4 248 51-302 9-262 (307)
56 KOG0645 WD40 repeat protein [G 99.9 2.2E-25 4.8E-30 224.5 31.1 249 50-303 5-267 (312)
57 KOG0281 Beta-TrCP (transducin 99.9 2.9E-28 6.4E-33 251.2 10.5 240 7-259 228-480 (499)
58 KOG0289 mRNA splicing factor [ 99.9 2.8E-26 6E-31 243.1 24.9 278 17-296 220-505 (506)
59 KOG0277 Peroxisomal targeting 99.9 2.7E-26 5.8E-31 229.1 22.7 278 19-296 11-308 (311)
60 PTZ00421 coronin; Provisional 99.9 3.2E-25 6.9E-30 254.7 33.5 228 11-238 70-314 (493)
61 KOG1407 WD40 repeat protein [F 99.9 1.5E-25 3.2E-30 224.6 26.4 275 10-288 14-293 (313)
62 KOG0283 WD40 repeat-containing 99.9 4.4E-26 9.6E-31 259.7 25.4 248 53-303 260-582 (712)
63 PTZ00421 coronin; Provisional 99.9 1.1E-24 2.3E-29 250.4 37.1 247 16-263 20-297 (493)
64 KOG0305 Anaphase promoting com 99.9 1.4E-25 3E-30 250.0 27.9 272 22-299 183-463 (484)
65 KOG0310 Conserved WD40 repeat- 99.9 8E-26 1.7E-30 243.4 24.0 277 15-294 25-306 (487)
66 KOG0274 Cdc4 and related F-box 99.9 2.6E-25 5.5E-30 256.1 29.5 250 6-264 238-490 (537)
67 KOG0973 Histone transcription 99.9 4.3E-25 9.4E-30 257.0 29.9 291 12-303 9-361 (942)
68 KOG1446 Histone H3 (Lys4) meth 99.9 7.1E-24 1.5E-28 218.5 34.9 291 9-303 7-309 (311)
69 KOG0268 Sof1-like rRNA process 99.9 2.1E-26 4.5E-31 239.5 16.0 284 10-300 60-348 (433)
70 KOG0288 WD40 repeat protein Ti 99.9 2.3E-26 5.1E-31 242.7 16.6 280 10-294 169-458 (459)
71 KOG0277 Peroxisomal targeting 99.9 6.8E-26 1.5E-30 226.2 18.2 240 15-254 59-307 (311)
72 KOG0282 mRNA splicing factor [ 99.9 3.3E-26 7.1E-31 245.9 15.6 257 50-307 205-472 (503)
73 KOG0267 Microtubule severing p 99.9 1.6E-26 3.6E-31 257.3 13.4 353 28-387 3-364 (825)
74 PTZ00420 coronin; Provisional 99.9 1.3E-23 2.7E-28 243.0 37.2 225 35-260 50-297 (568)
75 PTZ00420 coronin; Provisional 99.9 7.9E-24 1.7E-28 244.7 34.9 232 7-239 65-318 (568)
76 KOG0305 Anaphase promoting com 99.9 8.5E-25 1.8E-29 243.8 25.8 239 16-258 217-463 (484)
77 KOG0640 mRNA cleavage stimulat 99.9 5.9E-25 1.3E-29 224.3 22.0 288 7-295 103-424 (430)
78 KOG0278 Serine/threonine kinas 99.9 1.2E-25 2.6E-30 223.7 15.9 249 8-261 51-302 (334)
79 KOG0310 Conserved WD40 repeat- 99.9 7.5E-25 1.6E-29 235.9 22.7 238 12-253 64-305 (487)
80 KOG0306 WD40-repeat-containing 99.9 1.3E-24 2.8E-29 243.0 24.9 247 7-257 405-665 (888)
81 KOG0300 WD40 repeat-containing 99.9 1.5E-24 3.2E-29 221.6 22.9 291 7-300 139-479 (481)
82 KOG0772 Uncharacterized conser 99.9 1.9E-24 4.1E-29 233.1 24.6 284 10-294 161-484 (641)
83 KOG0313 Microtubule binding pr 99.9 4.1E-24 8.8E-29 223.8 25.5 251 3-256 131-418 (423)
84 KOG0275 Conserved WD40 repeat- 99.9 3.1E-25 6.6E-30 227.0 16.0 254 57-311 211-481 (508)
85 KOG0301 Phospholipase A2-activ 99.9 4.2E-24 9.1E-29 237.7 25.7 285 7-303 4-294 (745)
86 KOG0641 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 199.4 32.0 289 7-297 23-349 (350)
87 KOG0264 Nucleosome remodeling 99.9 8.1E-24 1.7E-28 226.7 23.7 251 6-256 114-404 (422)
88 KOG0289 mRNA splicing factor [ 99.9 1.2E-23 2.6E-28 223.2 24.4 247 8-255 253-505 (506)
89 KOG0293 WD40 repeat-containing 99.9 4.9E-24 1.1E-28 224.7 21.2 257 51-309 216-482 (519)
90 KOG0294 WD40 repeat-containing 99.9 2.9E-23 6.4E-28 213.0 26.1 263 32-300 4-284 (362)
91 KOG0643 Translation initiation 99.9 8.6E-24 1.9E-28 212.6 21.1 250 6-258 42-319 (327)
92 KOG0647 mRNA export protein (c 99.9 1.8E-23 3.9E-28 213.5 23.3 239 14-258 25-319 (347)
93 KOG0294 WD40 repeat-containing 99.9 4.1E-23 8.9E-28 212.0 26.0 245 7-258 34-283 (362)
94 KOG0973 Histone transcription 99.9 2.2E-23 4.8E-28 242.9 26.6 251 9-260 62-359 (942)
95 KOG0308 Conserved WD40 repeat- 99.9 3.1E-24 6.7E-29 237.1 17.9 286 14-300 19-330 (735)
96 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.8E-21 3.8E-26 208.9 38.1 267 30-301 2-283 (300)
97 KOG0639 Transducin-like enhanc 99.9 1E-23 2.2E-28 226.4 19.5 280 13-296 416-703 (705)
98 KOG1407 WD40 repeat protein [F 99.9 6.8E-23 1.5E-27 205.6 24.0 235 11-248 59-293 (313)
99 KOG1446 Histone H3 (Lys4) meth 99.9 9.7E-22 2.1E-26 202.8 31.9 254 52-307 7-272 (311)
100 KOG0308 Conserved WD40 repeat- 99.9 1.3E-23 2.7E-28 232.3 18.2 291 9-300 66-396 (735)
101 KOG0299 U3 snoRNP-associated p 99.9 1.9E-22 4.1E-27 216.0 26.2 282 9-294 135-453 (479)
102 KOG0288 WD40 repeat protein Ti 99.9 2.1E-23 4.7E-28 220.4 18.5 242 7-253 210-458 (459)
103 KOG0301 Phospholipase A2-activ 99.9 1.6E-22 3.5E-27 225.1 23.9 241 10-260 51-292 (745)
104 KOG0299 U3 snoRNP-associated p 99.9 1.5E-22 3.3E-27 216.7 22.2 232 13-248 199-446 (479)
105 KOG2055 WD40 repeat protein [G 99.9 4.7E-22 1E-26 212.7 25.0 279 16-297 213-512 (514)
106 KOG0641 WD40 repeat protein [G 99.9 3.7E-21 8E-26 189.0 28.4 247 8-256 81-349 (350)
107 KOG0640 mRNA cleavage stimulat 99.9 1.8E-22 4E-27 206.2 17.9 248 7-255 163-425 (430)
108 KOG1539 WD repeat protein [Gen 99.9 5.7E-21 1.2E-25 216.4 31.6 289 5-295 191-646 (910)
109 KOG1274 WD40 repeat protein [G 99.9 3.4E-21 7.4E-26 220.5 29.3 275 13-294 10-297 (933)
110 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.2E-20 1.1E-24 197.5 36.3 257 8-269 23-292 (300)
111 KOG1408 WD40 repeat protein [F 99.9 1.9E-21 4E-26 215.9 24.2 300 4-303 357-719 (1080)
112 KOG0300 WD40 repeat-containing 99.9 1.4E-21 2.9E-26 200.1 20.3 255 50-306 139-437 (481)
113 KOG1036 Mitotic spindle checkp 99.9 9.9E-21 2.1E-25 194.4 26.5 266 15-287 12-294 (323)
114 KOG2096 WD40 repeat protein [G 99.9 7.5E-21 1.6E-25 195.2 25.5 284 7-294 77-399 (420)
115 KOG0646 WD40 repeat protein [G 99.9 1.3E-21 2.8E-26 210.0 20.8 221 16-238 81-330 (476)
116 KOG1273 WD40 repeat protein [G 99.9 5.2E-21 1.1E-25 196.2 24.0 278 19-300 26-325 (405)
117 KOG4283 Transcription-coupled 99.9 9.3E-21 2E-25 192.7 24.6 285 13-300 40-368 (397)
118 KOG2048 WD40 repeat protein [G 99.9 7.9E-20 1.7E-24 203.6 34.1 287 7-297 16-319 (691)
119 KOG1332 Vesicle coat complex C 99.9 1.4E-21 3.1E-26 194.5 17.7 243 13-256 8-286 (299)
120 KOG0772 Uncharacterized conser 99.9 4.6E-21 1E-25 207.0 20.4 236 17-253 215-484 (641)
121 KOG0269 WD40 repeat-containing 99.9 7.1E-22 1.5E-26 222.2 14.6 231 18-249 89-332 (839)
122 KOG0646 WD40 repeat protein [G 99.9 1.9E-20 4.1E-25 201.1 23.1 237 35-272 57-323 (476)
123 KOG0302 Ribosome Assembly prot 99.9 1.6E-20 3.4E-25 196.8 21.7 242 11-254 146-436 (440)
124 KOG0639 Transducin-like enhanc 99.9 3.6E-21 7.8E-26 206.9 16.6 236 16-255 465-703 (705)
125 KOG0269 WD40 repeat-containing 99.9 3.2E-21 7E-26 217.0 16.9 280 17-299 40-342 (839)
126 KOG0264 Nucleosome remodeling 99.9 1.9E-20 4.2E-25 200.8 21.7 241 57-297 122-404 (422)
127 KOG1036 Mitotic spindle checkp 99.9 7.2E-20 1.6E-24 188.1 23.5 229 13-247 51-294 (323)
128 KOG2106 Uncharacterized conser 99.9 3.1E-19 6.7E-24 192.7 29.3 282 12-303 241-587 (626)
129 KOG4328 WD40 protein [Function 99.9 7.1E-20 1.5E-24 196.1 23.1 291 8-298 178-496 (498)
130 KOG1274 WD40 repeat protein [G 99.8 1.5E-19 3.3E-24 207.0 25.7 242 56-299 10-264 (933)
131 KOG0647 mRNA export protein (c 99.8 2.4E-19 5.2E-24 183.5 24.1 240 57-300 25-284 (347)
132 KOG2106 Uncharacterized conser 99.8 2.4E-18 5.1E-23 185.9 32.9 286 7-300 191-524 (626)
133 KOG1539 WD repeat protein [Gen 99.8 3E-18 6.6E-23 194.5 33.5 284 19-303 162-612 (910)
134 KOG1408 WD40 repeat protein [F 99.8 1.1E-19 2.4E-24 201.9 19.8 243 14-257 457-714 (1080)
135 KOG0268 Sof1-like rRNA process 99.8 4.3E-20 9.3E-25 192.7 15.5 244 8-259 101-348 (433)
136 KOG4283 Transcription-coupled 99.8 4.2E-19 9.1E-24 180.8 22.1 204 56-260 40-280 (397)
137 KOG1332 Vesicle coat complex C 99.8 1.4E-19 3E-24 180.4 18.2 244 56-299 8-288 (299)
138 KOG2445 Nuclear pore complex c 99.8 1.1E-18 2.4E-23 179.1 25.2 242 13-256 10-318 (361)
139 COG2319 FOG: WD40 repeat [Gene 99.8 3.7E-17 8E-22 178.9 38.3 288 11-300 60-362 (466)
140 KOG0650 WD40 repeat nucleolar 99.8 5.1E-19 1.1E-23 194.3 23.0 281 10-294 394-732 (733)
141 KOG1063 RNA polymerase II elon 99.8 1.5E-18 3.3E-23 193.5 26.4 296 5-300 180-651 (764)
142 KOG0321 WD40 repeat-containing 99.8 5.6E-19 1.2E-23 195.4 22.5 281 22-303 55-397 (720)
143 KOG0270 WD40 repeat-containing 99.8 4.3E-19 9.2E-24 189.7 20.3 240 20-259 177-452 (463)
144 KOG1009 Chromatin assembly com 99.8 3.6E-18 7.8E-23 180.9 25.6 288 15-302 12-377 (434)
145 KOG2445 Nuclear pore complex c 99.8 4.4E-18 9.4E-23 174.7 24.9 248 56-303 10-324 (361)
146 COG2319 FOG: WD40 repeat [Gene 99.8 1.9E-16 4.1E-21 173.3 39.3 288 7-298 146-443 (466)
147 KOG2048 WD40 repeat protein [G 99.8 3.6E-17 7.7E-22 182.7 31.0 288 7-299 59-363 (691)
148 KOG2055 WD40 repeat protein [G 99.8 3.4E-18 7.4E-23 183.4 22.0 252 4-256 245-512 (514)
149 KOG0302 Ribosome Assembly prot 99.8 3.8E-18 8.2E-23 179.1 21.6 202 56-258 148-380 (440)
150 KOG0321 WD40 repeat-containing 99.8 2E-18 4.4E-23 191.0 19.9 250 9-260 93-395 (720)
151 KOG1273 WD40 repeat protein [G 99.8 7.7E-18 1.7E-22 173.1 22.7 245 62-309 26-292 (405)
152 KOG4378 Nuclear protein COP1 [ 99.8 1.7E-18 3.6E-23 186.4 17.0 218 20-239 83-305 (673)
153 KOG1034 Transcriptional repres 99.8 2.1E-17 4.5E-22 171.0 24.3 290 4-296 24-382 (385)
154 KOG1538 Uncharacterized conser 99.8 4.4E-18 9.5E-23 188.0 20.6 281 18-308 14-304 (1081)
155 KOG1034 Transcriptional repres 99.8 6.3E-18 1.4E-22 174.8 19.8 240 14-256 87-381 (385)
156 KOG1063 RNA polymerase II elon 99.8 5.4E-17 1.2E-21 181.3 26.0 286 13-300 264-702 (764)
157 KOG1272 WD40-repeat-containing 99.8 7.8E-19 1.7E-23 188.2 10.6 288 59-353 129-421 (545)
158 KOG0307 Vesicle coat complex C 99.8 1.8E-18 3.8E-23 203.0 14.0 244 16-259 64-330 (1049)
159 KOG0270 WD40 repeat-containing 99.8 5.9E-18 1.3E-22 181.1 16.4 208 12-220 239-454 (463)
160 KOG2096 WD40 repeat protein [G 99.8 4.5E-17 9.9E-22 167.6 22.2 235 18-254 134-400 (420)
161 KOG4328 WD40 protein [Function 99.8 2.7E-17 5.8E-22 176.5 20.1 255 2-257 220-494 (498)
162 KOG4378 Nuclear protein COP1 [ 99.8 2.6E-17 5.7E-22 177.3 19.4 260 18-278 36-303 (673)
163 KOG1445 Tumor-specific antigen 99.8 4.4E-17 9.6E-22 179.3 20.7 124 7-130 70-199 (1012)
164 KOG0307 Vesicle coat complex C 99.7 5.2E-18 1.1E-22 199.1 12.4 280 20-300 10-330 (1049)
165 PRK11028 6-phosphogluconolacto 99.7 5.9E-15 1.3E-19 162.8 34.3 266 31-299 4-306 (330)
166 KOG0303 Actin-binding protein 99.7 1.8E-16 4E-21 167.3 20.2 226 11-238 76-320 (472)
167 KOG0642 Cell-cycle nuclear pro 99.7 3.8E-17 8.3E-22 179.4 15.8 250 11-262 289-567 (577)
168 KOG1188 WD40 repeat protein [G 99.7 2.2E-16 4.8E-21 164.4 20.2 266 30-296 41-345 (376)
169 KOG0650 WD40 repeat nucleolar 99.7 3.9E-16 8.4E-21 171.8 21.8 242 51-295 392-678 (733)
170 KOG2919 Guanine nucleotide-bin 99.7 1.2E-15 2.6E-20 157.7 23.8 238 18-257 51-328 (406)
171 KOG4227 WD40 repeat protein [G 99.7 5.5E-16 1.2E-20 162.9 21.5 288 6-295 46-385 (609)
172 KOG2110 Uncharacterized conser 99.7 3.7E-14 8.1E-19 149.4 34.1 286 16-309 5-342 (391)
173 KOG1524 WD40 repeat-containing 99.7 2.4E-16 5.1E-21 171.3 18.1 263 14-293 12-282 (737)
174 KOG1007 WD repeat protein TSSC 99.7 6.7E-16 1.4E-20 157.4 20.0 234 10-245 57-348 (370)
175 KOG2919 Guanine nucleotide-bin 99.7 8.9E-16 1.9E-20 158.6 19.3 238 16-256 104-367 (406)
176 KOG0644 Uncharacterized conser 99.7 1.1E-17 2.4E-22 189.3 5.7 243 8-255 182-467 (1113)
177 KOG1538 Uncharacterized conser 99.7 7.4E-16 1.6E-20 170.6 19.2 244 4-256 41-293 (1081)
178 KOG0649 WD40 repeat protein [G 99.7 5.4E-15 1.2E-19 147.6 22.9 231 61-298 12-275 (325)
179 KOG0649 WD40 repeat protein [G 99.7 1.5E-14 3.3E-19 144.4 25.8 230 18-256 12-274 (325)
180 KOG0290 Conserved WD40 repeat- 99.7 2E-15 4.3E-20 154.1 19.5 237 14-253 94-362 (364)
181 KOG1587 Cytoplasmic dynein int 99.7 1.3E-14 2.7E-19 166.9 28.3 265 39-303 222-522 (555)
182 KOG1009 Chromatin assembly com 99.7 3.2E-15 6.9E-20 158.8 21.5 247 9-257 58-373 (434)
183 KOG0303 Actin-binding protein 99.7 2.1E-15 4.5E-20 159.4 19.3 205 54-260 76-298 (472)
184 KOG1587 Cytoplasmic dynein int 99.7 4.4E-15 9.4E-20 170.6 23.4 244 14-257 240-517 (555)
185 PRK11028 6-phosphogluconolacto 99.7 5.4E-14 1.2E-18 155.1 30.8 246 8-257 27-305 (330)
186 KOG1517 Guanine nucleotide bin 99.7 1.8E-14 3.8E-19 167.1 25.8 284 17-301 1065-1385(1387)
187 KOG1524 WD40 repeat-containing 99.7 8.9E-15 1.9E-19 159.3 21.7 207 30-253 76-282 (737)
188 KOG1963 WD40 repeat protein [G 99.7 1.9E-14 4.2E-19 165.5 25.5 289 13-303 202-589 (792)
189 KOG0322 G-protein beta subunit 99.6 3E-15 6.5E-20 151.1 16.3 243 10-255 8-322 (323)
190 KOG1240 Protein kinase contain 99.6 6.3E-14 1.4E-18 165.0 25.5 253 4-256 1036-1334(1431)
191 KOG1272 WD40-repeat-containing 99.6 1E-15 2.2E-20 164.6 9.5 230 18-254 131-360 (545)
192 KOG1007 WD repeat protein TSSC 99.6 1.5E-14 3.2E-19 147.6 17.4 200 14-216 121-362 (370)
193 KOG1523 Actin-related protein 99.6 6.3E-14 1.4E-18 145.2 21.9 240 58-297 9-278 (361)
194 KOG0322 G-protein beta subunit 99.6 9.5E-15 2.1E-19 147.5 15.1 246 49-296 4-322 (323)
195 PRK01742 tolB translocation pr 99.6 4.1E-14 8.8E-19 161.9 22.5 219 9-238 196-426 (429)
196 KOG2394 WD40 protein DMR-N9 [G 99.6 2.7E-14 5.9E-19 156.0 19.6 242 69-317 183-470 (636)
197 KOG0642 Cell-cycle nuclear pro 99.6 7E-15 1.5E-19 161.8 14.9 221 4-226 332-572 (577)
198 KOG1188 WD40 repeat protein [G 99.6 3.6E-14 7.8E-19 148.0 19.1 190 72-261 41-247 (376)
199 KOG1523 Actin-related protein 99.6 8.9E-14 1.9E-18 144.0 20.9 236 10-246 4-268 (361)
200 PRK01742 tolB translocation pr 99.6 2.1E-13 4.5E-18 156.1 25.8 207 38-255 183-400 (429)
201 KOG1445 Tumor-specific antigen 99.6 2.7E-14 5.9E-19 157.6 17.3 240 67-309 587-854 (1012)
202 KOG2139 WD40 repeat protein [G 99.6 7.4E-13 1.6E-17 139.0 25.3 279 17-300 99-434 (445)
203 KOG0771 Prolactin regulatory e 99.6 4.9E-14 1.1E-18 150.9 15.3 194 63-257 148-355 (398)
204 KOG0771 Prolactin regulatory e 99.6 4.9E-14 1.1E-18 150.9 15.2 195 20-216 148-355 (398)
205 KOG1963 WD40 repeat protein [G 99.6 2E-12 4.3E-17 149.2 29.0 295 3-302 3-380 (792)
206 KOG0644 Uncharacterized conser 99.5 8.4E-15 1.8E-19 166.2 9.1 245 52-300 183-471 (1113)
207 KOG2110 Uncharacterized conser 99.5 2.9E-12 6.3E-17 135.2 27.1 237 59-302 5-253 (391)
208 KOG1310 WD40 repeat protein [G 99.5 2.8E-14 6.1E-19 155.8 12.2 216 7-223 41-311 (758)
209 KOG4227 WD40 repeat protein [G 99.5 3.9E-13 8.5E-18 141.6 20.0 248 53-300 50-325 (609)
210 KOG1334 WD40 repeat protein [G 99.5 6.3E-14 1.4E-18 151.8 14.1 290 8-298 134-467 (559)
211 KOG1240 Protein kinase contain 99.5 8.9E-13 1.9E-17 155.6 24.2 258 44-302 1034-1339(1431)
212 KOG1517 Guanine nucleotide bin 99.5 5.2E-13 1.1E-17 155.2 21.9 240 17-258 1110-1383(1387)
213 KOG1310 WD40 repeat protein [G 99.5 5.8E-14 1.3E-18 153.3 13.1 210 52-261 43-308 (758)
214 PRK05137 tolB translocation pr 99.5 7.2E-12 1.6E-16 143.7 30.1 203 39-247 182-396 (435)
215 PRK03629 tolB translocation pr 99.5 4.1E-12 8.9E-17 145.3 27.6 222 10-237 192-427 (429)
216 KOG2111 Uncharacterized conser 99.5 2.4E-11 5.1E-16 126.3 30.3 235 18-258 7-258 (346)
217 KOG2394 WD40 protein DMR-N9 [G 99.5 2.5E-13 5.5E-18 148.5 15.3 164 16-195 219-384 (636)
218 PF02239 Cytochrom_D1: Cytochr 99.5 4E-11 8.7E-16 133.9 33.4 297 6-306 26-356 (369)
219 KOG3881 Uncharacterized conser 99.5 1.8E-12 3.9E-17 137.6 20.5 223 11-238 100-342 (412)
220 KOG2321 WD40 repeat protein [G 99.5 5.9E-12 1.3E-16 138.8 24.9 282 8-296 44-342 (703)
221 PRK04922 tolB translocation pr 99.5 1.6E-11 3.4E-16 140.8 29.2 203 39-247 184-398 (433)
222 PRK03629 tolB translocation pr 99.5 2.5E-11 5.3E-16 138.9 30.5 211 40-256 180-406 (429)
223 KOG1334 WD40 repeat protein [G 99.5 5.6E-13 1.2E-17 144.5 14.6 284 52-336 135-462 (559)
224 PRK04922 tolB translocation pr 99.5 1E-11 2.2E-16 142.3 25.9 222 9-237 196-432 (433)
225 KOG4497 Uncharacterized conser 99.5 1.6E-11 3.5E-16 127.5 24.2 268 17-289 49-424 (447)
226 KOG2111 Uncharacterized conser 99.5 4.8E-11 1.1E-15 124.0 27.4 174 39-216 75-257 (346)
227 PRK02889 tolB translocation pr 99.5 1.3E-11 2.8E-16 141.2 25.9 204 39-248 176-391 (427)
228 PRK02889 tolB translocation pr 99.4 9.3E-12 2E-16 142.4 24.1 222 10-238 189-425 (427)
229 PRK05137 tolB translocation pr 99.4 3E-11 6.5E-16 138.6 27.8 223 8-237 193-432 (435)
230 PF08662 eIF2A: Eukaryotic tra 99.4 1.4E-11 3E-16 125.6 21.6 149 105-258 9-181 (194)
231 PF08662 eIF2A: Eukaryotic tra 99.4 2.6E-11 5.5E-16 123.6 22.0 155 63-223 9-186 (194)
232 KOG0280 Uncharacterized conser 99.4 3.9E-11 8.6E-16 123.4 23.1 285 12-300 10-336 (339)
233 KOG0290 Conserved WD40 repeat- 99.4 5.9E-12 1.3E-16 129.0 17.0 196 14-211 148-361 (364)
234 KOG4497 Uncharacterized conser 99.4 3.4E-11 7.5E-16 125.1 22.0 275 21-301 13-395 (447)
235 PF02239 Cytochrom_D1: Cytochr 99.4 2.3E-10 4.9E-15 127.9 30.4 270 32-302 9-307 (369)
236 KOG3881 Uncharacterized conser 99.4 3.3E-11 7.1E-16 128.2 22.0 243 16-261 55-325 (412)
237 KOG2139 WD40 repeat protein [G 99.4 3.7E-11 8E-16 126.4 21.0 194 59-256 98-309 (445)
238 PF10282 Lactonase: Lactonase, 99.4 3.4E-09 7.4E-14 117.9 38.2 271 32-303 2-330 (345)
239 TIGR02800 propeller_TolB tol-p 99.4 2.6E-10 5.5E-15 129.8 29.9 204 39-248 170-385 (417)
240 PF10282 Lactonase: Lactonase, 99.3 4.9E-09 1.1E-13 116.7 36.1 243 15-258 35-324 (345)
241 PRK00178 tolB translocation pr 99.3 4.1E-10 8.8E-15 129.0 27.6 223 9-237 191-427 (430)
242 PRK00178 tolB translocation pr 99.3 8.4E-10 1.8E-14 126.4 30.0 203 40-248 180-394 (430)
243 TIGR02800 propeller_TolB tol-p 99.3 5.9E-10 1.3E-14 126.9 26.3 220 9-235 182-416 (417)
244 KOG4547 WD40 repeat-containing 99.3 5.7E-10 1.2E-14 124.5 25.1 187 69-257 3-221 (541)
245 PRK01029 tolB translocation pr 99.3 1.3E-09 2.8E-14 124.6 27.9 225 12-239 180-426 (428)
246 PRK04792 tolB translocation pr 99.3 7.9E-10 1.7E-14 127.2 25.9 220 12-237 213-446 (448)
247 KOG2315 Predicted translation 99.3 2.8E-09 6E-14 118.2 27.4 276 17-303 35-396 (566)
248 PRK01029 tolB translocation pr 99.2 4.6E-09 9.9E-14 120.1 30.0 219 39-260 165-407 (428)
249 PRK04792 tolB translocation pr 99.2 4E-09 8.6E-14 121.4 29.7 202 40-247 199-412 (448)
250 KOG4547 WD40 repeat-containing 99.2 1.5E-09 3.2E-14 121.3 24.9 187 28-216 4-221 (541)
251 KOG0974 WD-repeat protein WDR6 99.2 1.9E-10 4.1E-15 135.1 17.4 195 18-216 89-289 (967)
252 TIGR03300 assembly_YfgL outer 99.2 1.6E-08 3.4E-13 113.9 31.2 263 30-303 66-344 (377)
253 TIGR02658 TTQ_MADH_Hv methylam 99.2 4.2E-08 9.2E-13 107.9 33.4 259 39-303 27-336 (352)
254 KOG1354 Serine/threonine prote 99.2 9.2E-10 2E-14 115.4 18.8 245 58-303 24-365 (433)
255 COG2706 3-carboxymuconate cycl 99.2 5.5E-08 1.2E-12 103.6 31.6 262 38-300 15-324 (346)
256 KOG4190 Uncharacterized conser 99.2 7.9E-11 1.7E-15 128.8 10.0 241 6-253 725-985 (1034)
257 KOG1354 Serine/threonine prote 99.2 1.3E-09 2.9E-14 114.2 18.6 242 15-259 24-362 (433)
258 KOG1064 RAVE (regulator of V-A 99.2 1.3E-10 2.7E-15 141.5 11.9 198 12-225 2204-2408(2439)
259 KOG2315 Predicted translation 99.2 6.4E-09 1.4E-13 115.5 24.0 232 20-260 129-394 (566)
260 KOG0974 WD-repeat protein WDR6 99.1 1.1E-09 2.4E-14 128.7 18.4 196 60-258 88-290 (967)
261 KOG2321 WD40 repeat protein [G 99.1 3.3E-09 7E-14 117.6 20.1 192 63-256 137-343 (703)
262 TIGR03300 assembly_YfgL outer 99.1 2.5E-08 5.4E-13 112.2 28.2 254 30-294 106-376 (377)
263 KOG2041 WD40 repeat protein [G 99.1 5.8E-09 1.3E-13 117.5 22.2 279 15-297 13-337 (1189)
264 KOG1409 Uncharacterized conser 99.1 2.4E-09 5.2E-14 112.4 17.2 212 4-216 12-271 (404)
265 TIGR02658 TTQ_MADH_Hv methylam 99.1 3.9E-07 8.4E-12 100.4 35.0 239 24-267 53-342 (352)
266 KOG2314 Translation initiation 99.1 2E-08 4.3E-13 111.0 24.4 277 20-303 214-579 (698)
267 COG2706 3-carboxymuconate cycl 99.1 3.2E-07 6.9E-12 97.9 31.3 249 10-259 33-324 (346)
268 PLN02919 haloacid dehalogenase 99.1 2E-07 4.4E-12 117.1 35.2 238 20-260 571-892 (1057)
269 KOG1064 RAVE (regulator of V-A 99.1 1.1E-09 2.4E-14 133.6 13.7 192 59-263 2208-2405(2439)
270 KOG0280 Uncharacterized conser 99.0 2.6E-08 5.7E-13 102.9 19.5 226 18-245 71-319 (339)
271 PF04762 IKI3: IKI3 family; I 99.0 6.1E-07 1.3E-11 111.0 34.6 281 16-302 75-461 (928)
272 KOG1832 HIV-1 Vpr-binding prot 99.0 2.2E-10 4.8E-15 131.1 3.9 222 7-246 1092-1320(1516)
273 PF08450 SGL: SMP-30/Gluconola 99.0 1.1E-06 2.4E-11 92.8 31.8 218 21-246 4-244 (246)
274 PRK04043 tolB translocation pr 99.0 6.4E-07 1.4E-11 102.1 31.4 199 40-247 170-387 (419)
275 COG5354 Uncharacterized protei 99.0 1.1E-07 2.3E-12 104.8 23.7 278 15-303 31-354 (561)
276 KOG4190 Uncharacterized conser 99.0 2E-09 4.3E-14 118.0 9.9 239 52-294 728-985 (1034)
277 KOG1912 WD40 repeat protein [G 99.0 3.5E-08 7.7E-13 112.5 19.8 287 16-305 15-372 (1062)
278 COG4946 Uncharacterized protei 98.9 5.5E-07 1.2E-11 98.1 27.6 260 17-284 226-505 (668)
279 PF13360 PQQ_2: PQQ-like domai 98.9 3.6E-07 7.8E-12 95.4 25.1 216 80-302 2-235 (238)
280 KOG0309 Conserved WD40 repeat- 98.9 1.3E-08 2.9E-13 115.3 14.7 282 16-300 24-342 (1081)
281 PRK04043 tolB translocation pr 98.9 6.3E-07 1.4E-11 102.1 27.9 194 18-218 189-403 (419)
282 PLN02919 haloacid dehalogenase 98.9 1.4E-06 2.9E-11 109.8 33.2 236 63-301 571-892 (1057)
283 PRK11138 outer membrane biogen 98.9 4.4E-07 9.6E-12 102.8 26.1 256 31-296 122-393 (394)
284 PF04762 IKI3: IKI3 family; I 98.9 2.9E-06 6.4E-11 105.0 35.1 240 17-259 22-336 (928)
285 KOG4532 WD40-like repeat conta 98.9 2.7E-07 5.8E-12 94.4 21.1 227 30-256 85-331 (344)
286 COG5354 Uncharacterized protei 98.9 6.9E-07 1.5E-11 98.5 25.8 278 17-302 72-400 (561)
287 COG4946 Uncharacterized protei 98.9 3.9E-06 8.4E-11 91.7 31.0 176 24-204 327-507 (668)
288 KOG2041 WD40 repeat protein [G 98.9 1.1E-07 2.3E-12 107.5 19.6 244 10-258 65-339 (1189)
289 PF13360 PQQ_2: PQQ-like domai 98.9 9.4E-07 2E-11 92.2 25.7 218 37-261 1-235 (238)
290 PRK11138 outer membrane biogen 98.8 1E-06 2.3E-11 99.8 27.1 264 31-303 71-359 (394)
291 COG5170 CDC55 Serine/threonine 98.8 7E-08 1.5E-12 100.2 15.3 242 58-300 25-370 (460)
292 KOG1409 Uncharacterized conser 98.8 1.1E-07 2.5E-12 100.1 16.2 253 48-303 13-276 (404)
293 KOG0882 Cyclophilin-related pe 98.8 4.9E-08 1.1E-12 105.7 13.7 249 14-264 7-313 (558)
294 PF07433 DUF1513: Protein of u 98.8 8E-06 1.7E-10 87.4 30.1 225 20-249 8-278 (305)
295 KOG1912 WD40 repeat protein [G 98.8 3.7E-07 8E-12 104.5 20.7 238 59-298 15-305 (1062)
296 KOG4649 PQQ (pyrrolo-quinoline 98.7 1E-05 2.2E-10 82.8 27.0 117 22-140 16-132 (354)
297 COG5170 CDC55 Serine/threonine 98.7 3.4E-07 7.3E-12 95.2 15.8 231 15-248 25-358 (460)
298 KOG4714 Nucleoporin [Nuclear s 98.7 1.4E-07 2.9E-12 96.2 12.6 196 19-216 39-255 (319)
299 KOG3914 WD repeat protein WDR4 98.7 2.2E-07 4.8E-12 99.9 13.6 158 21-182 67-232 (390)
300 PF08450 SGL: SMP-30/Gluconola 98.7 6.3E-05 1.4E-09 79.4 32.4 213 63-283 3-241 (246)
301 KOG4532 WD40-like repeat conta 98.6 6.3E-06 1.4E-10 84.6 21.9 222 37-264 50-290 (344)
302 KOG3914 WD repeat protein WDR4 98.6 3.8E-07 8.2E-12 98.2 13.0 161 61-224 64-232 (390)
303 KOG0309 Conserved WD40 repeat- 98.6 1.8E-07 3.8E-12 106.4 9.9 206 11-216 109-340 (1081)
304 KOG2695 WD40 repeat protein [G 98.6 1.7E-07 3.7E-12 98.8 8.9 159 75-236 228-401 (425)
305 cd00216 PQQ_DH Dehydrogenases 98.6 2.2E-05 4.8E-10 91.5 27.6 265 31-303 63-430 (488)
306 KOG2695 WD40 repeat protein [G 98.6 1.2E-07 2.6E-12 99.8 7.6 159 33-194 228-401 (425)
307 PF07433 DUF1513: Protein of u 98.6 7.6E-05 1.6E-09 80.0 28.8 223 61-287 6-276 (305)
308 KOG2314 Translation initiation 98.5 7.6E-06 1.7E-10 91.1 20.7 232 22-257 311-574 (698)
309 KOG1645 RING-finger-containing 98.5 4.6E-06 9.9E-11 89.8 17.2 246 7-257 184-462 (463)
310 KOG1275 PAB-dependent poly(A) 98.5 2.2E-06 4.9E-11 99.9 15.9 180 29-213 147-340 (1118)
311 KOG1275 PAB-dependent poly(A) 98.5 2.4E-06 5.2E-11 99.7 16.0 179 71-254 147-340 (1118)
312 KOG4714 Nucleoporin [Nuclear s 98.5 1.3E-06 2.9E-11 89.1 11.8 166 8-174 81-255 (319)
313 KOG1832 HIV-1 Vpr-binding prot 98.4 1E-07 2.2E-12 109.9 2.6 201 50-264 1092-1299(1516)
314 KOG2066 Vacuolar assembly/sort 98.4 9.2E-06 2E-10 94.2 17.6 181 16-215 39-233 (846)
315 KOG1645 RING-finger-containing 98.4 2.1E-05 4.6E-10 84.8 19.0 252 41-297 175-461 (463)
316 PF15492 Nbas_N: Neuroblastoma 98.4 0.0001 2.2E-09 77.1 22.7 196 19-226 46-270 (282)
317 KOG2066 Vacuolar assembly/sort 98.4 1.5E-05 3.3E-10 92.4 18.4 181 60-256 40-233 (846)
318 PF15492 Nbas_N: Neuroblastoma 98.4 0.0004 8.7E-09 72.6 27.0 232 22-266 3-269 (282)
319 KOG1920 IkappaB kinase complex 98.3 0.00033 7.1E-09 84.9 28.4 198 59-258 68-324 (1265)
320 PRK02888 nitrous-oxide reducta 98.3 0.00028 6.1E-09 82.0 26.7 260 31-298 68-405 (635)
321 PRK02888 nitrous-oxide reducta 98.3 0.00037 8E-09 81.1 26.8 209 68-285 201-449 (635)
322 KOG1920 IkappaB kinase complex 98.3 0.00028 6.2E-09 85.5 26.5 216 17-238 69-345 (1265)
323 KOG2114 Vacuolar assembly/sort 98.2 0.00013 2.8E-09 85.4 22.5 219 18-244 27-270 (933)
324 KOG2114 Vacuolar assembly/sort 98.2 0.00022 4.9E-09 83.5 24.3 194 66-260 30-247 (933)
325 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0016 3.4E-08 67.2 26.0 143 71-215 23-165 (354)
326 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.2 0.0019 4.1E-08 76.0 30.7 188 31-220 71-338 (527)
327 cd00216 PQQ_DH Dehydrogenases 98.1 0.0023 5.1E-08 74.7 29.8 232 30-268 111-436 (488)
328 PF08596 Lgl_C: Lethal giant l 98.1 0.00084 1.8E-08 75.8 24.6 235 18-254 3-333 (395)
329 PF00400 WD40: WD domain, G-be 98.1 1.2E-05 2.6E-10 59.1 6.6 39 133-171 1-39 (39)
330 PF00400 WD40: WD domain, G-be 98.1 1.3E-05 2.9E-10 58.8 6.8 39 175-213 1-39 (39)
331 KOG3617 WD40 and TPR repeat-co 98.1 0.00011 2.5E-09 85.2 17.1 188 17-215 16-220 (1416)
332 PF06977 SdiA-regulated: SdiA- 98.0 0.002 4.4E-08 68.0 25.1 200 10-212 15-247 (248)
333 KOG0882 Cyclophilin-related pe 98.0 2.4E-05 5.1E-10 85.4 10.5 203 58-263 8-238 (558)
334 PF00780 CNH: CNH domain; Int 98.0 0.0041 9E-08 66.6 27.3 231 69-311 5-269 (275)
335 PF06977 SdiA-regulated: SdiA- 98.0 0.0017 3.7E-08 68.6 23.3 193 54-248 16-242 (248)
336 COG3391 Uncharacterized conser 98.0 0.0095 2E-07 67.4 30.5 241 18-262 32-289 (381)
337 KOG1008 Uncharacterized conser 98.0 2.7E-06 5.8E-11 96.1 1.6 198 16-215 56-275 (783)
338 PF00930 DPPIV_N: Dipeptidyl p 97.9 0.0029 6.3E-08 70.7 25.8 245 38-285 22-345 (353)
339 COG3391 Uncharacterized conser 97.9 0.004 8.6E-08 70.4 27.0 216 20-238 77-309 (381)
340 PF11768 DUF3312: Protein of u 97.9 0.012 2.5E-07 67.5 30.1 113 104-218 208-332 (545)
341 COG0823 TolB Periplasmic compo 97.9 0.00099 2.2E-08 75.9 20.5 196 6-205 182-389 (425)
342 COG0823 TolB Periplasmic compo 97.8 0.00089 1.9E-08 76.3 19.1 194 49-246 182-388 (425)
343 PF04053 Coatomer_WDAD: Coatom 97.8 0.0072 1.6E-07 69.3 26.3 175 58-252 31-219 (443)
344 KOG3621 WD40 repeat-containing 97.8 0.00016 3.6E-09 83.1 12.8 195 58-256 32-244 (726)
345 PF00780 CNH: CNH domain; Int 97.8 0.014 3E-07 62.5 27.0 223 28-265 6-264 (275)
346 COG3386 Gluconolactonase [Carb 97.8 0.0091 2E-07 65.2 25.0 221 21-247 29-275 (307)
347 PF04841 Vps16_N: Vps16, N-ter 97.8 0.023 4.9E-07 64.9 29.0 205 40-254 62-285 (410)
348 KOG3621 WD40 repeat-containing 97.7 0.0019 4.1E-08 74.7 19.8 134 28-162 44-188 (726)
349 PF11768 DUF3312: Protein of u 97.7 0.0022 4.7E-08 73.2 19.9 115 17-133 206-331 (545)
350 PF02897 Peptidase_S9_N: Proly 97.7 0.033 7.1E-07 63.5 30.1 241 62-305 126-412 (414)
351 PF02897 Peptidase_S9_N: Proly 97.7 0.024 5.3E-07 64.6 28.6 223 19-244 126-387 (414)
352 PF06433 Me-amine-dh_H: Methyl 97.6 0.065 1.4E-06 58.5 28.7 265 39-309 17-332 (342)
353 PF14583 Pectate_lyase22: Olig 97.6 0.065 1.4E-06 59.5 28.6 262 45-309 16-340 (386)
354 KOG3617 WD40 and TPR repeat-co 97.6 0.00022 4.7E-09 83.0 9.6 190 105-303 19-226 (1416)
355 PF06433 Me-amine-dh_H: Methyl 97.6 0.058 1.3E-06 58.9 27.1 240 21-265 40-329 (342)
356 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.043 9.3E-07 64.7 28.4 236 31-268 122-502 (527)
357 PF04053 Coatomer_WDAD: Coatom 97.6 0.022 4.7E-07 65.4 25.0 226 9-256 25-262 (443)
358 PF14583 Pectate_lyase22: Olig 97.5 0.09 1.9E-06 58.5 27.6 274 23-299 42-383 (386)
359 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.017 3.7E-07 64.6 22.7 227 16-246 42-346 (353)
360 PF08596 Lgl_C: Lethal giant l 97.5 0.017 3.6E-07 65.5 22.5 231 61-300 3-293 (395)
361 PF04841 Vps16_N: Vps16, N-ter 97.4 0.059 1.3E-06 61.5 26.1 229 8-261 72-319 (410)
362 COG3386 Gluconolactonase [Carb 97.4 0.063 1.4E-06 58.7 24.9 217 65-287 30-276 (307)
363 PF08553 VID27: VID27 cytoplas 97.4 0.0066 1.4E-07 73.3 18.7 192 15-214 429-646 (794)
364 PF03178 CPSF_A: CPSF A subuni 97.3 0.039 8.5E-07 60.7 22.9 171 40-215 3-202 (321)
365 PF08553 VID27: VID27 cytoplas 97.3 0.0043 9.4E-08 74.8 15.7 135 120-255 501-646 (794)
366 KOG1008 Uncharacterized conser 97.3 8.2E-05 1.8E-09 84.5 0.7 195 59-255 56-274 (783)
367 PF05096 Glu_cyclase_2: Glutam 97.2 0.21 4.6E-06 52.8 25.7 190 60-254 45-257 (264)
368 TIGR03074 PQQ_membr_DH membran 97.1 0.12 2.6E-06 63.2 25.6 192 31-223 196-485 (764)
369 PF03178 CPSF_A: CPSF A subuni 97.0 0.11 2.4E-06 57.1 22.9 178 29-211 42-261 (321)
370 KOG2395 Protein involved in va 97.0 0.022 4.7E-07 64.3 16.7 142 70-215 344-500 (644)
371 PRK13616 lipoprotein LpqB; Pro 97.0 0.049 1.1E-06 64.9 20.3 201 38-249 328-560 (591)
372 PHA02713 hypothetical protein; 97.0 0.037 8E-07 65.8 19.3 219 82-308 273-544 (557)
373 KOG4441 Proteins containing BT 97.0 0.044 9.5E-07 65.2 19.7 229 69-303 283-552 (571)
374 KOG4640 Anaphase-promoting com 96.9 0.0035 7.6E-08 71.8 9.8 94 59-153 20-115 (665)
375 PRK13616 lipoprotein LpqB; Pro 96.9 0.08 1.7E-06 63.1 21.7 170 80-256 328-525 (591)
376 KOG4640 Anaphase-promoting com 96.9 0.0036 7.8E-08 71.7 9.7 94 101-195 20-115 (665)
377 PF14870 PSII_BNR: Photosynthe 96.9 0.99 2.1E-05 49.2 35.1 280 3-294 4-301 (302)
378 KOG4441 Proteins containing BT 96.8 0.062 1.3E-06 63.9 19.8 213 28-248 284-532 (571)
379 KOG2395 Protein involved in va 96.8 0.016 3.4E-07 65.4 13.4 138 116-255 349-499 (644)
380 COG3204 Uncharacterized protei 96.8 0.25 5.4E-06 52.6 21.4 193 56-249 82-305 (316)
381 PF05096 Glu_cyclase_2: Glutam 96.8 0.94 2E-05 48.1 27.2 191 8-204 34-249 (264)
382 COG3490 Uncharacterized protei 96.8 0.16 3.4E-06 53.6 19.6 202 102-303 68-316 (366)
383 PHA02713 hypothetical protein; 96.8 0.096 2.1E-06 62.3 20.6 202 40-249 273-523 (557)
384 PF14783 BBS2_Mid: Ciliary BBS 96.8 0.11 2.5E-06 47.5 16.2 101 19-126 2-109 (111)
385 PRK10115 protease 2; Provision 96.7 2.5 5.3E-05 51.7 33.4 191 18-214 128-343 (686)
386 COG3490 Uncharacterized protei 96.7 0.39 8.4E-06 50.8 21.6 232 19-253 70-345 (366)
387 KOG1897 Damage-specific DNA bi 96.7 2.6 5.7E-05 51.5 33.1 282 15-300 529-901 (1096)
388 KOG2444 WD40 repeat protein [G 96.7 0.0019 4.2E-08 65.7 4.5 141 73-216 32-178 (238)
389 smart00320 WD40 WD40 repeats. 96.6 0.0053 1.2E-07 42.4 5.6 39 49-87 2-40 (40)
390 PRK10115 protease 2; Provision 96.6 2.6 5.6E-05 51.5 32.0 192 61-256 128-346 (686)
391 smart00320 WD40 WD40 repeats. 96.6 0.0063 1.4E-07 42.0 5.9 39 133-171 2-40 (40)
392 PRK13684 Ycf48-like protein; P 96.6 1.7 3.6E-05 48.3 32.1 277 5-295 35-329 (334)
393 PF15390 DUF4613: Domain of un 96.6 0.093 2E-06 60.3 17.5 150 102-259 20-187 (671)
394 TIGR03074 PQQ_membr_DH membran 96.6 0.38 8.2E-06 59.0 24.0 112 71-183 194-354 (764)
395 KOG4499 Ca2+-binding protein R 96.4 0.45 9.8E-06 49.0 19.2 211 23-237 21-263 (310)
396 PF14870 PSII_BNR: Photosynthe 96.3 2.1 4.6E-05 46.7 26.8 222 19-249 64-297 (302)
397 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.26 5.6E-06 45.2 15.5 100 62-168 2-109 (111)
398 PF05694 SBP56: 56kDa selenium 96.2 1.4 3.1E-05 49.7 23.9 217 29-245 87-391 (461)
399 PHA03098 kelch-like protein; P 96.2 0.15 3.2E-06 60.4 17.7 183 28-218 294-514 (534)
400 KOG2079 Vacuolar assembly/sort 96.0 0.085 1.8E-06 64.2 13.6 99 30-130 100-202 (1206)
401 PRK13684 Ycf48-like protein; P 95.7 2.9 6.3E-05 46.4 24.1 149 101-253 172-328 (334)
402 PF10647 Gmad1: Lipoprotein Lp 95.7 3 6.4E-05 44.4 23.2 144 61-207 25-187 (253)
403 TIGR02604 Piru_Ver_Nterm putat 95.7 3.6 7.8E-05 46.2 24.9 151 7-162 2-202 (367)
404 PHA03098 kelch-like protein; P 95.6 0.31 6.8E-06 57.6 16.9 146 70-219 294-468 (534)
405 PF10647 Gmad1: Lipoprotein Lp 95.6 3.3 7.2E-05 44.0 22.9 144 103-249 25-187 (253)
406 KOG4499 Ca2+-binding protein R 95.6 1.3 2.7E-05 45.9 18.1 134 59-195 108-263 (310)
407 PHA02790 Kelch-like protein; P 95.5 0.56 1.2E-05 54.8 18.2 180 28-218 271-473 (480)
408 KOG2079 Vacuolar assembly/sort 95.4 0.047 1E-06 66.2 8.6 100 113-214 99-202 (1206)
409 KOG1916 Nuclear protein, conta 95.3 0.012 2.6E-07 69.7 3.3 174 13-220 129-328 (1283)
410 PF05694 SBP56: 56kDa selenium 95.2 7 0.00015 44.3 24.1 188 70-257 86-343 (461)
411 PF14655 RAB3GAP2_N: Rab3 GTPa 95.1 8 0.00017 44.1 27.1 42 186-227 308-349 (415)
412 COG1520 FOG: WD40-like repeat 95.1 7.5 0.00016 43.6 28.8 192 31-225 70-278 (370)
413 PHA02790 Kelch-like protein; P 94.9 0.98 2.1E-05 52.8 17.8 182 113-300 272-473 (480)
414 COG1520 FOG: WD40-like repeat 94.9 7.1 0.00015 43.8 24.2 149 70-222 68-224 (370)
415 TIGR03118 PEPCTERM_chp_1 conse 94.8 7.1 0.00015 42.2 23.2 218 18-237 24-307 (336)
416 KOG1916 Nuclear protein, conta 94.8 0.023 5E-07 67.4 3.9 173 55-261 128-328 (1283)
417 PF15390 DUF4613: Domain of un 94.8 0.71 1.5E-05 53.4 15.2 148 18-174 21-187 (671)
418 KOG2444 WD40 repeat protein [G 94.7 0.093 2E-06 53.8 7.4 104 28-131 69-177 (238)
419 PF14727 PHTB1_N: PTHB1 N-term 94.4 12 0.00025 42.9 32.0 143 27-172 35-203 (418)
420 COG3204 Uncharacterized protei 94.4 6.5 0.00014 42.2 20.3 159 97-255 81-260 (316)
421 smart00036 CNH Domain found in 94.1 11 0.00023 41.3 28.2 227 30-265 14-279 (302)
422 KOG3630 Nuclear pore complex, 94.0 0.42 9.2E-06 58.6 11.9 140 103-244 102-260 (1405)
423 PF07995 GSDH: Glucose / Sorbo 94.0 12 0.00026 41.4 26.5 225 18-248 3-326 (331)
424 PF12234 Rav1p_C: RAVE protein 93.9 2 4.3E-05 51.2 17.0 111 144-255 30-155 (631)
425 PLN00033 photosystem II stabil 93.6 16 0.00035 41.5 25.7 142 104-250 241-393 (398)
426 PLN00033 photosystem II stabil 93.5 17 0.00037 41.4 34.5 144 146-294 241-396 (398)
427 KOG3630 Nuclear pore complex, 93.4 0.53 1.1E-05 57.9 11.3 142 61-203 102-261 (1405)
428 TIGR02604 Piru_Ver_Nterm putat 93.4 2.8 6.1E-05 47.1 16.9 141 60-204 14-202 (367)
429 TIGR03547 muta_rot_YjhT mutatr 93.3 16 0.00034 40.5 23.5 95 28-122 17-128 (346)
430 PF10168 Nup88: Nuclear pore c 93.2 1.7 3.6E-05 53.1 15.5 93 102-217 85-181 (717)
431 COG5276 Uncharacterized conser 93.0 15 0.00033 39.5 29.6 271 16-296 86-368 (370)
432 PF12894 Apc4_WD40: Anaphase-p 92.7 0.31 6.7E-06 37.6 5.4 35 185-220 11-45 (47)
433 PF12234 Rav1p_C: RAVE protein 92.7 3.7 8.1E-05 49.0 16.9 111 102-214 30-155 (631)
434 KOG1897 Damage-specific DNA bi 92.6 34 0.00073 42.4 31.6 194 102-298 715-943 (1096)
435 KOG2280 Vacuolar assembly/sort 92.5 5.9 0.00013 47.3 17.7 195 39-239 64-271 (829)
436 COG3823 Glutamine cyclotransfe 92.4 6.6 0.00014 40.1 15.6 172 70-245 55-247 (262)
437 TIGR03548 mutarot_permut cycli 92.4 20 0.00043 39.3 21.8 106 70-176 72-197 (323)
438 PF12894 Apc4_WD40: Anaphase-p 92.4 0.36 7.8E-06 37.3 5.4 36 14-51 9-44 (47)
439 COG5167 VID27 Protein involved 92.3 1.7 3.7E-05 49.4 12.5 139 31-173 482-632 (776)
440 PF03022 MRJP: Major royal jel 92.2 20 0.00044 38.9 24.0 163 82-245 35-253 (287)
441 PLN02193 nitrile-specifier pro 91.3 18 0.00038 42.2 20.5 186 28-218 175-413 (470)
442 KOG2280 Vacuolar assembly/sort 91.2 7.9 0.00017 46.3 16.9 211 80-303 63-286 (829)
443 COG5167 VID27 Protein involved 91.1 2.9 6.3E-05 47.6 12.7 138 116-256 483-632 (776)
444 PF05935 Arylsulfotrans: Aryls 91.1 10 0.00022 44.3 18.2 151 73-228 117-314 (477)
445 PRK14131 N-acetylneuraminic ac 90.8 32 0.0007 38.7 22.0 53 112-164 84-149 (376)
446 PRK14131 N-acetylneuraminic ac 90.8 28 0.0006 39.2 20.9 39 124-163 190-230 (376)
447 COG4590 ABC-type uncharacteriz 90.2 0.61 1.3E-05 52.0 6.5 175 96-272 215-402 (733)
448 PLN02153 epithiospecifier prot 90.2 34 0.00073 37.9 25.3 187 28-218 32-287 (341)
449 PF10168 Nup88: Nuclear pore c 90.1 6.2 0.00013 48.2 15.7 28 60-88 85-112 (717)
450 COG3823 Glutamine cyclotransfe 90.1 13 0.00028 38.1 15.0 177 21-203 50-247 (262)
451 TIGR03547 muta_rot_YjhT mutatr 89.9 35 0.00076 37.7 23.4 53 112-164 63-128 (346)
452 PLN02153 epithiospecifier prot 89.9 36 0.00077 37.7 22.3 105 112-219 85-229 (341)
453 COG3292 Predicted periplasmic 89.8 25 0.00054 41.1 18.8 268 15-292 163-442 (671)
454 PF03022 MRJP: Major royal jel 89.3 36 0.00078 36.9 21.3 163 40-203 35-253 (287)
455 KOG1983 Tomosyn and related SN 89.2 11 0.00025 47.8 17.5 232 59-303 35-270 (993)
456 PF10395 Utp8: Utp8 family; I 89.2 59 0.0013 39.2 23.9 237 23-264 34-313 (670)
457 COG5276 Uncharacterized conser 89.0 37 0.0008 36.7 25.4 151 59-218 86-244 (370)
458 KOG2063 Vacuolar assembly/sort 88.9 21 0.00045 44.4 18.6 249 29-286 26-297 (877)
459 PF14781 BBS2_N: Ciliary BBSom 88.6 15 0.00033 35.0 13.6 114 64-181 3-133 (136)
460 PF13449 Phytase-like: Esteras 88.6 27 0.00058 38.6 18.2 142 102-244 20-231 (326)
461 COG1506 DAP2 Dipeptidyl aminop 88.3 68 0.0015 38.8 26.0 286 11-303 54-390 (620)
462 PF13449 Phytase-like: Esteras 88.1 46 0.001 36.7 24.0 142 60-202 20-231 (326)
463 PF08728 CRT10: CRT10; InterP 87.9 12 0.00027 45.1 15.7 111 62-173 103-246 (717)
464 PF05935 Arylsulfotrans: Aryls 87.9 22 0.00047 41.6 17.7 144 37-185 126-313 (477)
465 smart00036 CNH Domain found in 87.8 46 0.001 36.3 24.5 228 71-304 13-277 (302)
466 PF08801 Nucleoporin_N: Nup133 87.7 30 0.00066 39.5 18.6 32 185-216 189-220 (422)
467 KOG2247 WD40 repeat-containing 87.6 0.074 1.6E-06 59.7 -2.7 145 63-211 38-184 (615)
468 PLN02193 nitrile-specifier pro 87.3 65 0.0014 37.5 22.9 143 71-219 176-355 (470)
469 TIGR03548 mutarot_permut cycli 86.7 29 0.00063 38.0 17.2 106 28-135 72-198 (323)
470 PF14781 BBS2_N: Ciliary BBSom 86.7 24 0.00052 33.7 13.7 112 107-222 4-132 (136)
471 PF14727 PHTB1_N: PTHB1 N-term 86.5 67 0.0014 36.8 26.4 142 70-214 36-203 (418)
472 COG5290 IkappaB kinase complex 86.5 21 0.00044 43.1 15.8 91 147-239 250-348 (1243)
473 PF14655 RAB3GAP2_N: Rab3 GTPa 86.4 5.9 0.00013 45.1 11.5 84 141-224 305-407 (415)
474 KOG1900 Nuclear pore complex, 86.0 9.5 0.00021 48.3 13.6 138 78-216 96-273 (1311)
475 PF08728 CRT10: CRT10; InterP 85.8 5.4 0.00012 48.1 11.1 112 19-131 103-246 (717)
476 COG4257 Vgb Streptogramin lyas 85.5 56 0.0012 35.0 21.9 242 60-306 62-314 (353)
477 KOG2247 WD40 repeat-containing 85.5 0.11 2.4E-06 58.4 -2.7 148 18-169 36-184 (615)
478 PF07569 Hira: TUP1-like enhan 85.1 6.1 0.00013 41.1 10.0 64 193-256 18-95 (219)
479 PF10313 DUF2415: Uncharacteri 84.9 3.1 6.8E-05 31.4 5.5 32 17-48 1-34 (43)
480 PF10433 MMS1_N: Mono-function 84.8 88 0.0019 36.7 27.3 230 68-303 219-482 (504)
481 PRK05560 DNA gyrase subunit A; 84.4 1.2E+02 0.0026 37.9 25.5 206 29-239 548-793 (805)
482 PF02333 Phytase: Phytase; In 84.3 79 0.0017 35.7 23.4 190 29-223 68-299 (381)
483 KOG1900 Nuclear pore complex, 84.3 11 0.00024 47.8 13.0 138 36-174 96-273 (1311)
484 PF14761 HPS3_N: Hermansky-Pud 84.0 46 0.001 34.4 15.4 137 114-255 29-213 (215)
485 KOG1983 Tomosyn and related SN 83.0 16 0.00034 46.6 14.2 26 194-219 243-268 (993)
486 PF10214 Rrn6: RNA polymerase 82.3 1.4E+02 0.0031 37.2 25.6 156 100-257 78-277 (765)
487 KOG2377 Uncharacterized conser 82.0 21 0.00046 40.4 12.9 136 38-175 42-187 (657)
488 PF10395 Utp8: Utp8 family; I 81.3 1.3E+02 0.0029 36.3 21.3 161 59-224 129-314 (670)
489 PF14761 HPS3_N: Hermansky-Pud 81.3 31 0.00067 35.6 13.0 102 156-258 29-165 (215)
490 PF07569 Hira: TUP1-like enhan 80.8 12 0.00026 38.9 10.2 69 67-136 18-100 (219)
491 PF12768 Rax2: Cortical protei 80.7 24 0.00052 38.2 12.7 113 123-236 16-145 (281)
492 PF10313 DUF2415: Uncharacteri 80.5 6.1 0.00013 29.9 5.6 32 144-175 1-35 (43)
493 KOG4460 Nuclear pore complex, 79.9 31 0.00067 39.9 13.4 99 103-223 105-206 (741)
494 PF02333 Phytase: Phytase; In 78.8 1.2E+02 0.0026 34.3 22.4 184 69-257 66-291 (381)
495 PF07250 Glyoxal_oxid_N: Glyox 78.3 21 0.00045 37.8 11.0 141 82-225 47-207 (243)
496 PF07995 GSDH: Glucose / Sorbo 77.9 27 0.00059 38.6 12.6 102 145-248 3-134 (331)
497 TIGR03118 PEPCTERM_chp_1 conse 76.9 1.2E+02 0.0026 33.2 22.1 202 62-264 25-287 (336)
498 PF08801 Nucleoporin_N: Nup133 76.5 1.2E+02 0.0026 34.7 17.8 30 228-257 190-220 (422)
499 PF12768 Rax2: Cortical protei 75.8 39 0.00086 36.5 12.6 97 81-178 16-128 (281)
500 KOG2063 Vacuolar assembly/sort 74.7 65 0.0014 40.2 15.3 232 66-303 21-274 (877)
No 1
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.8e-89 Score=751.68 Aligned_cols=774 Identities=47% Similarity=0.667 Sum_probs=588.6
Q ss_pred CCcccceeE-----EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEE
Q 003459 1 MTTKRAYKL-----QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA 75 (818)
Q Consensus 1 m~t~r~~kl-----~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~La 75 (818)
|.+++.+++ +++.+|...|.|+.. ....+.+++|+.|..+.+|.+.+...+..+.+|..+|.++.|++++.+|+
T Consensus 8 m~~~~~t~Lr~~~~~~~~~hsaav~~lk~-~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTREFVAHSAAVGCLKI-RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred ceeeeeeccccccchhhhhhhhhhceeee-eccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhc
Confidence 678888888 699999999999998 45889999999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 003459 76 AGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG 155 (818)
Q Consensus 76 sgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg 155 (818)
+|+.+|+|++||++.++.++++.+|...+.++.|+|.+.|++.|+.|+.+++||++...|.+.+++|...+.++.|+|+|
T Consensus 87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred ccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003459 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 235 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~f 235 (818)
+|++.|++|..++|||+..|+.+.+|+.|++.+..+.|+|...+++.|+.|++|++||+++++.+....+...+|.++.|
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~f 246 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAF 246 (825)
T ss_pred ceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEEECCCEE------------EEEecCCceeccccccccceeeeeecCCCEE--EEEEcCCeEEEEEecCCCc
Q 003459 236 NPDGRTLLCGLHESLK------------VFSWEPIRCHDAVDVGWSRLSDLNVHEGKLL--GCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 236 spdg~~Lasgs~d~I~------------Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lL--atg~~Dg~V~IWdvd~~~~ 301 (818)
+|+|+.+++|....+. ++.|++..+..++...+.....+......+. +.+..+..-++.+...
T Consensus 247 n~~~~~~~~G~q~sl~~~~~a~ah~~~~~~~~Ep~~~~~~vqs~~~~ek~v~v~~d~~~ln~~~s~~~~~kl~~~~~--- 323 (825)
T KOG0267|consen 247 NPDGKIVLSGEQISLSESRTASAHVRKTLARWEPEMDGAVVQSNSHKEKVVAVGRDPQDLNAFSSKVNLSKLEDSTY--- 323 (825)
T ss_pred cCCceeeecCchhhhhhhhcccceeeccccccccccccceeeecCCcccccccccCccccccccccccccccccccc---
Confidence 9999999999777655 3444444443333333332222221111000 0000000000000000
Q ss_pred eeeeecccceeccccccccCCCCCcccccccccccccCCCccc-CCCccccccccccCcccccCCCCccccccccccccc
Q 003459 302 EPYTIGSVTRVNGLSESKSSASGNLSVLNENSAKASLGKLSVS-QNSDPLVKETKSLGRLSVSQNSDPLLKETKTLGRLS 380 (818)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (818)
.++ ...-..++++.++ +..++..+.++.-++-+.+++++....+.+..+...
T Consensus 324 ------------------------~p~---l~~t~~l~rl~~S~q~dep~~~~~k~~~~s~t~~~s~~~~~~s~P~~r~~ 376 (825)
T KOG0267|consen 324 ------------------------VPL---LKETKSLGRLSVSYQTDEPLDKSTKPHRRSSTSQNSDRSEVESKPLTRES 376 (825)
T ss_pred ------------------------cce---eccccchhccccccccCCCcccCCCCcccccccccccccccccCcccccc
Confidence 000 0001123333333 333333333332333345555554444444443333
Q ss_pred ccCCCCccccccccccCCCCCCCCcccccCCCCCc-ccccc---ccccccccccccccCCCCCccCCCCCcccccCCCCC
Q 003459 381 VSQNSEPAKESKVLSSTGSVPGTPQRVNLNMGSKT-SVVNS---TAVVSKRTSTRANTASNVPILNKSDIVPVIVPRTNT 456 (818)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 456 (818)
.....++.+...-+.+.+.++..|.|....+.++. +++++ .++.++.....++++.+... ...|..||+.+ ..+
T Consensus 377 s~~~~di~~~s~~lss~e~~~~~P~r~s~tn~~k~~sgvSs~~~rs~ts~~~~~k~n~ka~~~~-~e~~~~~v~~~-~~p 454 (825)
T KOG0267|consen 377 SNLSPDIPKESRTLSSTESNSEYPHRVSPTNPVKIVSGVSSSVTRSPTSPVNPGKANPKAEIAS-VEQDNNPVIQD-PLP 454 (825)
T ss_pred CCCCcccccccccccccccCCCCCCcccccCccccccccccccccCCCCCCCccccCccccccc-cccccccccCC-Ccc
Confidence 33333333344555666777888889888776666 66654 44555555566666555432 25677888887 556
Q ss_pred cccccccccccccccccccccccCccccccccccCCCCCCCCcccccccccCCCCccccccccccc--ccccccCccccc
Q 003459 457 RFEQAVESRKDIDVIGRTMPFSLQSKATDSRKFQNSGDEVDQPAVSVLCENTGSKATEVSSVADRN--TFAAIKGSIQGV 534 (818)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 534 (818)
..+.+.......+...|++|.++++.+.+.| ++++.....++ +...+.+++....+.-...++ +++....+.+.
T Consensus 455 ~~~q~~Esp~~~~~~arttP~s~~P~~~~~r--~~~rs~~~~~~-st~~~rtssspvmpv~lp~~s~~ty~~~~v~a~~- 530 (825)
T KOG0267|consen 455 TIEQATESPVPSTRIARTTPASVQPIALNSR--SNSRSDPPPPT-STVPERTSSSPVMPVILPQASMSTYPEPPVGASS- 530 (825)
T ss_pred cccccccCccccccccccCCccccccccccc--ccCCCCCCCcc-cccccccccCCccccccCCCcccccCCCCccccC-
Confidence 6667777778888888889998888777777 45555554333 333455666666666555555 67766665432
Q ss_pred cccccCCcccceeccCCCCCCCCCCCCCCccccccccCCCCCCCCCCcccccccCccccccccccccCCCCCCCCCCCCC
Q 003459 535 SVTERNSKEDIFTVSGKSGTMSMSESPASYEDERYDSLGHKSNRDGYAMESQKRGRMHSLVINWEKRGSSPNYDGPTSSI 614 (818)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (818)
.+........+-.|++.+.++.++.+...+..++.+..--.. .+..-.+.-++-.|...+.++.....+...|...+
T Consensus 531 -~a~~s~~r~~~~~~~~a~~~~~~~~~~~l~r~r~~~pa~~~~--tk~~~~~~~t~~~s~iasr~r~s~t~~~~tPa~~~ 607 (825)
T KOG0267|consen 531 -TARTSSARILPVTFNQANNISSEEAPVTLRRQRRNSPARVMP--TKLNQSVNMTSDTSHIASRHRVSPTQMLATPAVID 607 (825)
T ss_pred -cccccccccccccccccccccCcCCccccccccCCCcccccc--cccchhhcccccccchhhhhccCccccccccceec
Confidence 244444445566777777776666666544433331110000 00111122244455555666655555566666666
Q ss_pred CCCcccccCCCCccccccCCCCCcccccCCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHh
Q 003459 615 SSGTVSTVSMPPFNAFKQRGYSSSAEKETASVSDEDATADVMEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQK 694 (818)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~~~~~~~~~~h~~~~~~l~~r~~~l~~~~~~w~~~~~~~~~~~~~~ 694 (818)
.+.-.+..+-+|.++.++++.... |+...+.+|+++.++||..|++|++.|++|++|||+||+||+++|||++|.+++|
T Consensus 608 ~~~~mt~~et~~t~~~~q~~n~~~-ee~~~s~~eedI~e~im~~Hde~lstlqSRl~kLqiVR~~Wer~DiK~sI~s~~k 686 (825)
T KOG0267|consen 608 QVGDMTADETRPTNMQPQRDNLVQ-EEPIISDREEDIVEDIMGTHNEFLSTLQSRLTKLQIVRHFWERSDIKGSIGSLRK 686 (825)
T ss_pred cccccccccccccccccccccccc-cccccCcchhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 666666666678888888877766 7766678999999999999999999999999999999999999999999999999
Q ss_pred cCCceeehhhHHhhhcccceeeehhhhhhhhhHHhhhccccchhHHHHHHHHHHHHHHhhhhHHhhhcCCCcccccccHH
Q 003459 695 MADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISASTSVGVDIEAE 774 (818)
Q Consensus 695 ~~d~~v~~d~l~~~~~~~~~~~l~~c~~~lp~~~~ll~s~~e~~~~~~~~~l~~~~~~f~~~i~~~~~~~~~~gvd~~~e 774 (818)
|.|++|.||+|+||++|.++|+||+|+.|||+|+.||.|+||+|+.|+|+||++||+.||++|+++++||+.|||||+||
T Consensus 687 l~D~sV~ADvL~Iltek~eiLtLDl~t~l~P~lt~LLgS~~e~~v~vsld~Llklv~~fgt~I~stlsAp~~VGVDi~ae 766 (825)
T KOG0267|consen 687 LADNSVQADVLNILTEKIEILTLDLCTQLLPVLTALLGSKTERPVNVSLDMLLKLVAVFGTVIYSTLSAPRSVGVDIHAE 766 (825)
T ss_pred hhhhhHHHHHHHHHhhhhhHhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHHHHhhhhhhhhhhCCcccccccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccc-CcchhhhHHHHHhhcc
Q 003459 775 QRIERCNRCFIELEKVKCCLPTLMR-GGSVAKSAQELNLALQ 815 (818)
Q Consensus 775 ~r~~~c~~c~~~l~~i~~~l~~~~~-~g~~~~~~~el~~~~~ 815 (818)
||.++|..||.+|.||...|+.+.+ +|..++.+++|+.+..
T Consensus 767 er~~~~~lc~~~l~kl~~~~~s~s~~s~s~~~~~~s~~~~~~ 808 (825)
T KOG0267|consen 767 ERKERYSLCFVELPKLFCGLASLSKNSSSFIKKRRSLNKKGS 808 (825)
T ss_pred HHHhhhhhhhhhcchhhccccccccccccchhhhhhhccccc
Confidence 9999999999999999999999999 9999999999998653
No 2
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=100.00 E-value=1.7e-48 Score=383.43 Aligned_cols=160 Identities=44% Similarity=0.742 Sum_probs=157.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHhcCCceeehhhHHhhh--cccceeeehhhhhhhhhHHhhhcc
Q 003459 656 MEQHSQFVSSMQSRLAKLQAVYRYWERNDVKGAISAMQKMADHTVLADVMSIVV--EKIEIVTLDICSCLLPLLTGLLES 733 (818)
Q Consensus 656 ~~~h~~~~~~l~~r~~~l~~~~~~w~~~~~~~~~~~~~~~~d~~v~~d~l~~~~--~~~~~~~l~~c~~~lp~~~~ll~s 733 (818)
|++|++|+++|++|+++|++||++|+++|+|+||+++++|+|++|+||+|++|+ ++++.||||+|+.+||+|+.||+|
T Consensus 1 ~~~H~~~~~vL~~R~~~L~~v~~~W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~S 80 (164)
T PF13925_consen 1 SKGHDTMISVLQSRLTNLQVVRTFWRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQS 80 (164)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHhhhhHHhhhcC-CCcccccccHHHHHHHHHHHHHHHHHHhhhcccccc-CcchhhhHHHHH
Q 003459 734 DMDRHLSISLDILLKLVRTFGSMIYSAISA-STSVGVDIEAEQRIERCNRCFIELEKVKCCLPTLMR-GGSVAKSAQELN 811 (818)
Q Consensus 734 ~~e~~~~~~~~~l~~~~~~f~~~i~~~~~~-~~~~gvd~~~e~r~~~c~~c~~~l~~i~~~l~~~~~-~g~~~~~~~el~ 811 (818)
|||+|+.+||++|++|+++||++|++++++ ++.+||||+||||++||+.||.+|++|++.++.|.+ +|.+|+.||||+
T Consensus 81 k~E~~i~~aL~~L~~i~~~f~~~I~~~~~~~~~~~gVDl~~EeR~~kc~~c~~~L~~i~~~l~~l~~~~g~~g~~a~el~ 160 (164)
T PF13925_consen 81 KYESYISVALEMLRSILKKFGPVIRSNLSAPSPSIGVDLSAEERMEKCQECYQQLRKIVQILKSLARRSGEVGSLARELN 160 (164)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999999999999999999999999999996 488999999999999999999999999999999999 999999999999
Q ss_pred hhcc
Q 003459 812 LALQ 815 (818)
Q Consensus 812 ~~~~ 815 (818)
+.||
T Consensus 161 ~~l~ 164 (164)
T PF13925_consen 161 LELQ 164 (164)
T ss_pred HhcC
Confidence 9998
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-40 Score=343.46 Aligned_cols=303 Identities=24% Similarity=0.448 Sum_probs=274.1
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
..+.||.++|.|++|+| ++..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.||+|+.||+|++||..
T Consensus 109 sS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence 46789999999999999 77789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEE-EEEcCCCCCeEEEEEeC-----CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003459 90 EAKIV-RTLTGHRSNCISVDFHP-----FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 90 t~~~v-~~l~~h~~~V~sv~fsp-----dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~ 163 (818)
+|+.+ ..+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+.+|..+|+|++|-.+| +|++|+.
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~ 266 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ 266 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence 98754 67899999999999987 45689999999999999999999999999999999999998654 8999999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCEEEEEEe-----------CCCC-------------------------EEEEEeCCC
Q 003459 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFH-----------PHEF-------------------------LLATGSADR 207 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fs-----------pdg~-------------------------~Lasgs~Dg 207 (818)
|++|++|+...|++..++++|...|+.++++ |.++ .|++|+.|.
T Consensus 267 DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~ 346 (480)
T KOG0271|consen 267 DRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDF 346 (480)
T ss_pred CceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCc
Confidence 9999999999999999999999999999876 2233 499999999
Q ss_pred eEEEEECCC-CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEE
Q 003459 208 TVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGC 284 (818)
Q Consensus 208 ~I~IwDl~t-~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLat 284 (818)
++.+|+... .+++..+.+|..-|+.+.|+||++|+++++-| ++++|+-.+++.+..+..+-..++.+.+ .|.++|++
T Consensus 347 tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 347 TLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred eEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 999999764 45888899999999999999999999998766 7999999999999999888888888776 67899999
Q ss_pred EEcCCeEEEEEecCCCceeeeecccceeccccccccC
Q 003459 285 SYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSS 321 (818)
Q Consensus 285 g~~Dg~V~IWdvd~~~~~~~~~~~~~~~~~~~~~~~~ 321 (818)
|+.|.++++|++.+.++.. .+.||..++..
T Consensus 427 ~SkDsTLKvw~V~tkKl~~-------DLpGh~DEVf~ 456 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQ-------DLPGHADEVFA 456 (480)
T ss_pred cCCCceEEEEEeeeeeecc-------cCCCCCceEEE
Confidence 9999999999999998765 45556555544
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-39 Score=342.46 Aligned_cols=282 Identities=27% Similarity=0.530 Sum_probs=268.6
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCC
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS--EVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspd--g~~Lasgs~DG~I~IWDl~t 90 (818)
.+-+.+|..+.|+. ++..|+||+.+|.+++|+..+...+..|.+|...|.++.|+|. +..+++|+.||++++|++.+
T Consensus 172 ~gd~rPis~~~fS~-ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~ 250 (459)
T KOG0272|consen 172 VGDTRPISGCSFSR-DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ 250 (459)
T ss_pred ccCCCcceeeEeec-CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence 36678999999999 6778999999999999999999999999999999999999996 66899999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~Iw 170 (818)
..++..+.+|...|..++|+|+|++|++++.|.+-++||++++..+....+|...|.+++|++||..+++|+.|..-+||
T Consensus 251 e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 251 ETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVW 330 (459)
T ss_pred CcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC-CCCEEEEEECC-
Q 003459 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCGLHE- 248 (818)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fsp-dg~~Lasgs~d- 248 (818)
|+++|+++..+.+|..+|.+|.|+|+|..||+|+.|++++|||++..+.+..+.+|..-|+.+.|+| .|.+|++++.|
T Consensus 331 DlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~ 410 (459)
T KOG0272|consen 331 DLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDN 410 (459)
T ss_pred ecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 68889988766
Q ss_pred CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 249 SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
.++||.-.+..+.+.+..+-..+..+.+ ++++.+++++.|.++++|.
T Consensus 411 t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 411 TVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 6999999999999999999988888875 7899999999999999995
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-38 Score=325.98 Aligned_cols=288 Identities=23% Similarity=0.420 Sum_probs=262.1
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE-EEecCCCCCeEEEEEcC-----CCCEEEEEEC
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-LSLSGHTSGIDSVSFDS-----SEVLVAAGAA 79 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i-~~l~~h~~~V~~l~fsp-----dg~~Lasgs~ 79 (818)
..++.+.++|...|.|++|+| ++..||+|+.||.|++||..+++++ ..+.+|...|++++|.| ..++|++++.
T Consensus 147 eTp~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~sk 225 (480)
T KOG0271|consen 147 ETPLFTCKGHKNWVLCVAWSP-DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSK 225 (480)
T ss_pred CCcceeecCCccEEEEEEECC-CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccC
Confidence 356678999999999999999 6678999999999999999887665 57889999999999965 5679999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEc-------
Q 003459 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT------- 152 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fs------- 152 (818)
||.|+|||+..+.++..+.+|...|+|+.|--+ .++++|+.|++|++|+...|.++..+++|...|+.++.+
T Consensus 226 Dg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 226 DGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred CCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 999999999999999999999999999999854 499999999999999999999999999999999999877
Q ss_pred ----CCC-------------------------CEEEEEECCCeEEEEECCCC-eEEEEEecCCCCEEEEEEeCCCCEEEE
Q 003459 153 ----PDG-------------------------RWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLAT 202 (818)
Q Consensus 153 ----pdg-------------------------~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sv~fspdg~~Las 202 (818)
|.+ ..|++|++|.++.+|+.... +++..+.+|..-|+.+.|+||+.++|+
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence 223 35999999999999997654 578888899999999999999999999
Q ss_pred EeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCC
Q 003459 203 GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGK 280 (818)
Q Consensus 203 gs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~ 280 (818)
++.|..|++||.++|+.+..+++|-..|+.++|+.|.++|++|+.| +++||++.+.+...-+..+...+..+.+ +||+
T Consensus 385 aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc
Confidence 9999999999999999999999999999999999999999999888 5999999999888777777777777664 8999
Q ss_pred EEEEEEcCCeEEEEE
Q 003459 281 LLGCSYNQSCVGVWV 295 (818)
Q Consensus 281 lLatg~~Dg~V~IWd 295 (818)
.+++|+.|..+++|.
T Consensus 465 rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 465 RVASGGKDKVLRLWR 479 (480)
T ss_pred eeecCCCceEEEeec
Confidence 999999999999994
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.4e-36 Score=304.01 Aligned_cols=284 Identities=25% Similarity=0.444 Sum_probs=265.2
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
+.+++|.+.|.++.|++ +++.+++++.||.+.|||.-+....+.+.-....|..++|+|.|+++|+|+-|+...||++.
T Consensus 49 r~LkGH~~Ki~~~~ws~-Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST-DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEecccccceeeeEecC-CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 67899999999999999 77889999999999999999999999998889999999999999999999999999999998
Q ss_pred CC------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEE
Q 003459 90 EA------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGG 162 (818)
Q Consensus 90 t~------~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs 162 (818)
+. +..+.+.+|.+.+.|+.|.+ ..+|++++.|.+..+||+++++.+..|.+|.+.|.++.++| +++.+++|+
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~ 206 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG 206 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc
Confidence 54 45677899999999999997 56899999999999999999999999999999999999999 999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC--CCCeeEEEEeCCCC
Q 003459 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGR 240 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~--~~~I~sl~fspdg~ 240 (818)
.|+..++||++.+.+.+.|.+|++.|+++.|+|+|.-+++|+.|++.++||++..+.+..+... ..+|++++|+..|+
T Consensus 207 cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR 286 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR 286 (343)
T ss_pred cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence 9999999999999999999999999999999999999999999999999999999888877643 56899999999999
Q ss_pred EEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 241 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
+|++|.++ ++.|||.-..+....+..+...++++.. +||.-+++|+.|.+++||.
T Consensus 287 lLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 287 LLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99998766 6999998888888888889999999975 8999999999999999994
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=8.3e-36 Score=300.62 Aligned_cols=290 Identities=26% Similarity=0.427 Sum_probs=259.7
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-----CCceEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-----KPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~-----~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (818)
......+.+|++.|+.++..+.+..++++++.|.++.+|++. .|..++.+.||...|..+..+++|++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 345568899999999999999888999999999999999873 467788999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--CCCeEEEEEcCC--CC
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--TRGVNAIRFTPD--GR 156 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h--~~~V~~l~fspd--g~ 156 (818)
+++++||+.+++..+.|.+|...|.+++|+++...+++|+.|.+|++|++-. .+..++..+ ...|.|++|+|+ ..
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 9999999999999999999999999999999999999999999999999864 455555443 788999999997 78
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003459 157 WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (818)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fs 236 (818)
+|++++.|++|++||+++-+....+.+|.+.++.+.++|||.+.++|+.||.+.+||++.++.+..+. +...|.+++|+
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fs 242 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFS 242 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999987775 56789999999
Q ss_pred CCCCEEEEEECCCEEEEEecCCceecccccccc-------c---eeeeeecCCCEEEEEEcCCeEEEEEec
Q 003459 237 PDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWS-------R---LSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 237 pdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~-------~---v~~l~~~~g~lLatg~~Dg~V~IWdvd 297 (818)
|+.-+|+.+.+.+|+|||.++..+...+..... . +....+.+|+.|.+|+.|+.|++|.+.
T Consensus 243 pnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 243 PNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999889888888999999999988776543321 1 222335799999999999999999874
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.7e-37 Score=325.81 Aligned_cols=249 Identities=28% Similarity=0.536 Sum_probs=239.5
Q ss_pred ceeEEEEecCCCCEEEEEEeeC-CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRK-SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~-~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
...++.|.+|.+.|.++.|+|. ++.-+|+|+.||++++|++++...+..+.+|...|..++|+|+|++|++++.|.+-+
T Consensus 207 ~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWR 286 (459)
T KOG0272|consen 207 CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWR 286 (459)
T ss_pred cceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchh
Confidence 3567899999999999999997 466899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003459 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D 164 (818)
+||++++..+....||...|.+++|++||..+++|+.|..-+|||+++++++..+.+|..+|..+.|+|+|..|++|+.|
T Consensus 287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEE
Q 003459 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL 243 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sv~fsp-dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~La 243 (818)
++++|||++..+.+.++..|..-|+.++|.| .|.+|++++.|++++||..+++.++..+.+|.+.|.++.+++|+.+++
T Consensus 367 nt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred CcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEE
Confidence 9999999999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred EEECC-CEEEEE
Q 003459 244 CGLHE-SLKVFS 254 (818)
Q Consensus 244 sgs~d-~I~Vwd 254 (818)
+++.| ++++|.
T Consensus 447 t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 TSSFDRTIKLWR 458 (459)
T ss_pred EeccCceeeecc
Confidence 88766 799984
No 9
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.9e-33 Score=289.64 Aligned_cols=285 Identities=32% Similarity=0.637 Sum_probs=260.6
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
+.+.+|.+.|++++|+| ++.+|++++.||.|.+|++.+++....+..|...+..+.|.+++++|++++.+|.|++||+.
T Consensus 3 ~~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 3 RTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hHhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 46779999999999999 56789999999999999999888888899999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (818)
Q Consensus 90 t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~I 169 (818)
+++.+..+..|...+.++.|++++.++++++.+|.|++||+++++....+..|...+.+++|+|++.++++++.+|.|++
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 161 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence 98888889999999999999999888888888999999999999999999999999999999999998888888999999
Q ss_pred EECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-CC
Q 003459 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HE 248 (818)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs-~d 248 (818)
||+++++.+..+..|...+.++.|+|++..+++++.|+.|++||++.++.+..+..+...+.++.|++++.++++++ ++
T Consensus 162 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 99999999999998888999999999999999999999999999999999888878888999999999999999888 66
Q ss_pred CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 249 SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
.+++|++...+....+..+...+..+.+ +++++|++++.||.|++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8999999988777777666666777766 5679999999999999995
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.4e-34 Score=296.80 Aligned_cols=288 Identities=26% Similarity=0.497 Sum_probs=269.4
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
..+.+.+|..+|+.+-|+| .-.+++++++|++|++||..+++....++||++.|..|.|+..|+++++++.|-.+++||
T Consensus 100 l~~~l~g~r~~vt~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWD 178 (406)
T ss_pred chhhhhccccceeeeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhee
Confidence 3456778999999999999 677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 88 LEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 88 l~t-~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
.++ .++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.++-++.++.+|...|..++.+.||..+++++.|.+
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 987 5677888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCC---------------CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCee
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPH---------------EFLLATGSADRTVKFWDLETFELIGSAGPETSGVR 231 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspd---------------g~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~ 231 (818)
|++|-+.++.+...+..|+-+|-|++|.|. +.++.+++.|++|++||+.++.++.++.+|..+|+
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 999999999999999999999999999872 25999999999999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeeecCC-CEEEEEEcCCeEEEEEe
Q 003459 232 CLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 232 sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g-~lLatg~~Dg~V~IWdv 296 (818)
+++|+|.|+||+++.+| ++++||+...+|...+..+..-+..+.+|.. .++++|+-|..+.+|..
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999988877 6999999999999999988888888888654 68889999999999963
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-33 Score=291.08 Aligned_cols=287 Identities=25% Similarity=0.475 Sum_probs=259.0
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
+-+.+|.+.|.|+++.| +..+|++|+.|+++.|||+.+++...++.||-..|..+++++...|+++++.|+.|+.||++
T Consensus 145 rVi~gHlgWVr~vavdP-~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe 223 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDP-GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE 223 (460)
T ss_pred hhhhhccceEEEEeeCC-CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech
Confidence 35689999999999999 78899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (818)
Q Consensus 90 t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~I 169 (818)
..+.++.+.||-+.|.|++.+|.-+.|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|++
T Consensus 224 ~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrl 303 (460)
T KOG0285|consen 224 YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRL 303 (460)
T ss_pred hhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999997788999999999999
Q ss_pred EECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-
Q 003459 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE- 248 (818)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d- 248 (818)
||++.|+....+..|...+.+++.+|....+|+++.| .|+-|++..+..+..+.+|..-|.++....|| ++++|+++
T Consensus 304 WDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng 381 (460)
T KOG0285|consen 304 WDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNG 381 (460)
T ss_pred eeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCce
Confidence 9999999999999999999999999999999999977 59999999999999999999999999999887 55666665
Q ss_pred CEEEEEecCCceecccccc---------ccceeeeeecCCCEEEEEEcCCeEEEEEecCC
Q 003459 249 SLKVFSWEPIRCHDAVDVG---------WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~---------~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
.+.+|||+.+.+++..... .+.....+-..|..|++|..|.+|.+|.-|-.
T Consensus 382 ~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 382 SIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred EEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 5999999998776654211 11222233356788999999999999965543
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6e-33 Score=312.93 Aligned_cols=255 Identities=25% Similarity=0.520 Sum_probs=237.3
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-------------------------------CceEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-------------------------------PNAILS 54 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~-------------------------------~~~i~~ 54 (818)
.+.+.++..-...++|..|++ ++.+||.|-.|..|++|.+.. .....+
T Consensus 368 Sic~YT~~nt~~~v~ca~fSd-dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~ 446 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSD-DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT 446 (707)
T ss_pred cEEEEEEEEcCCcceeEeecC-CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE
Confidence 467778887778899999998 566999999999999998752 112345
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 003459 55 LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG 134 (818)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~ 134 (818)
+.||.++|..+.|+|+.++|++++.|+++++|.+.+...+..+.||..+|+++.|+|.|-|||+++.|++-++|......
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~ 526 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK 526 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 003459 135 CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 135 ~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
+++.+.+|.+.|.|+.|+|+..++++|+.|.+|++||..+|..+..|.+|.++|.+++|+|+|.+|++|+.||.|.+||+
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCcee
Q 003459 215 ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 261 (818)
Q Consensus 215 ~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~ 261 (818)
.+++++..+.+|.+.|.++.|+.||..|++|+.| ++++||+......
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 9999999999999999999999999999998766 6999998765443
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-32 Score=274.22 Aligned_cols=249 Identities=26% Similarity=0.484 Sum_probs=220.0
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
....++.|.||.-.|..++.++ +++++++++.|+++++||+.+++..+.|.+|...|.+++|++|.+.|++|+.|.+|+
T Consensus 52 ~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTik 130 (315)
T KOG0279|consen 52 YGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIK 130 (315)
T ss_pred cCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceee
Confidence 4456788999999999999999 778999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEcC-CCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003459 85 LWDLEEAKIVRTLTG-HRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (818)
Q Consensus 85 IWDl~t~~~v~~l~~-h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sg 161 (818)
+|+............ +...|.|+.|+|+ ..+|++++.|++|++||+++.+....+.+|.+.++.+.++|||..+++|
T Consensus 131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 999875544333332 3788999999998 6799999999999999999999999999999999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC---------CCCeeE
Q 003459 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE---------TSGVRC 232 (818)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~---------~~~I~s 232 (818)
+.||.+.+||++.++.++.+. |...|.+++|+|+..+|+.+... .|+|||++++..+..+... .....+
T Consensus 211 gkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~cls 288 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLS 288 (315)
T ss_pred CCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEE
Confidence 999999999999999988876 78899999999999888887654 5999999998887765432 122366
Q ss_pred EEEeCCCCEEEEEECC-CEEEEEec
Q 003459 233 LTFNPDGRTLLCGLHE-SLKVFSWE 256 (818)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd~~ 256 (818)
++|++||..|++|..+ .|++|.+.
T Consensus 289 laws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 289 LAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEcCCCcEEEeeecCCcEEEEEee
Confidence 7899999999999665 69999764
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.8e-32 Score=288.67 Aligned_cols=278 Identities=26% Similarity=0.455 Sum_probs=254.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~ 95 (818)
+..|++++|+. +|.+||+|..||.+++|+. ++..+.++..|.++|.++.|+..|.||++++.||++.+||..++...+
T Consensus 235 nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 235 NKDVTSLDWNN-DGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred cCCcceEEecC-CCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 35799999998 7889999999999999996 688888999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003459 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (818)
Q Consensus 96 ~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (818)
.+.-|..+-..+.|.. ...|++++.||.|+++.+....++.++.+|.+.|.++.|.|.|.+|++++.|++++||.....
T Consensus 313 ~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred eeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 9998888878899984 457899999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCCEEEEEEeCCC---------CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 176 KLLHDFKCHEGQIQCIDFHPHE---------FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 176 ~~i~~~~~h~~~I~sv~fspdg---------~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
.....+..|...|+.+.|+|.| ..+++++.|++|++||+..+.+++.+..|..+|++++|+|+|+|+++|+
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 9999999999999999999964 5799999999999999999999999999999999999999999999997
Q ss_pred CC-CEEEEEecCCceeccccccccceeeee-ecCCCEEEEEEcCCeEEEEEec
Q 003459 247 HE-SLKVFSWEPIRCHDAVDVGWSRLSDLN-VHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~-~~~g~lLatg~~Dg~V~IWdvd 297 (818)
-+ .+.+|+...++..+.+..... +..+. ..+|..|+.+..|+.+++-|+.
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~~~~-Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQGTGG-IFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeecCCCe-EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 66 599999999988887755555 34444 4788999999999999998864
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.8e-31 Score=265.24 Aligned_cols=279 Identities=20% Similarity=0.375 Sum_probs=242.6
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEcCCCCCeE
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK--IVRTLTGHRSNCI 105 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~--~v~~l~~h~~~V~ 105 (818)
..-+|++++.|.+|++|...+|.+..++....+.|+.+...|++++||+++ ...|++||+.+++ ++.++.+|...|.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceE
Confidence 345899999999999999999999999997788999999999999999887 5679999998875 6899999999999
Q ss_pred EEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-C
Q 003459 106 SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-H 184 (818)
Q Consensus 106 sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h 184 (818)
.+.|..+|+.+++|+.||+++|||++...+.+.|+ |..+|+++..+|+...|++|..+|.|++||+....+..++.. .
T Consensus 88 aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~ 166 (311)
T KOG0315|consen 88 AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPED 166 (311)
T ss_pred EEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCC
Confidence 99999999999999999999999999977777676 779999999999999999999999999999998877766653 3
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC------CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003459 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 185 ~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t------~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (818)
...|.++...|+|.+|+.+...|..++|++-+ .+++..++.|.+.+..+.+|||+++|++++.+ .++||+.+.
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~ 246 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDD 246 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCC
Confidence 46799999999999999999999999999865 35677789999999999999999999988766 699999988
Q ss_pred C-ceeccccccccce-eeeeecCCCEEEEEEcCCeEEEEEecCCCceeeeecc
Q 003459 258 I-RCHDAVDVGWSRL-SDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (818)
Q Consensus 258 ~-~~~~~~~~~~~~v-~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~ 308 (818)
. +....+..+..-+ .+.++.+|++|++++.|+.+++|++..++...-+.++
T Consensus 247 ~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 247 FFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred ceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 7 4444555552222 3455689999999999999999999999876654444
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.7e-32 Score=306.56 Aligned_cols=209 Identities=31% Similarity=0.618 Sum_probs=202.9
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
....++.+|.++|..+.|+| +.++|+++++|+++++|.+.+..++..++||..+|+++.|+|.|-|+|+++.|++.++|
T Consensus 442 ~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW 520 (707)
T ss_pred ceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence 34556999999999999999 67899999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
.....++.+.+.+|.+.|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.+|.++|.+++|+|+|++|++|+.||.
T Consensus 521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~ 600 (707)
T KOG0263|consen 521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL 600 (707)
T ss_pred ecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t 216 (818)
|.+||+..++.+..+.+|.+.|+++.|+.+|..||+|+.|++|++||+..
T Consensus 601 I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 601 IKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 99999999999999999999999999999999999999999999999864
No 17
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.6e-31 Score=302.12 Aligned_cols=287 Identities=29% Similarity=0.585 Sum_probs=253.0
Q ss_pred EEecC-CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 11 EFVAH-SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 11 ~~~~H-~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
.+..| ...|.|+.|++ +++++++++.|+.+++|+....+ ....+.+|...|.+++|+|+++++++++.|++|+|||
T Consensus 153 ~~~~~~~~sv~~~~fs~-~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSP-DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eecccccCceEEEEEcC-CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 34344 78999999999 56679999999999999997777 7777789999999999999999999999999999999
Q ss_pred C-CCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 88 L-EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 88 l-~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
+ ..+..++++.+|...|++++|+|+++++++|+.|++|+|||+++++++..+.+|...|.+++|+++|++|++++.|+.
T Consensus 232 ~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGT 311 (456)
T ss_pred ccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCcc
Confidence 9 566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCe--EEEEEecCCCC--EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCe---eEEEEeCCC
Q 003459 167 VKLWDLTAGK--LLHDFKCHEGQ--IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV---RCLTFNPDG 239 (818)
Q Consensus 167 I~IwDl~t~~--~i~~~~~h~~~--I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I---~sl~fspdg 239 (818)
|++||+.++. +...+..+... +++++|+|++.++++++.|+.+++||+..+..+..+.+|...+ .+..+++.|
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 9999999998 56777766555 9999999999999999999999999999999999988887653 344567899
Q ss_pred CEEEEEECC-CEEEEEecCCceecccccc-ccceeeeeec-CCCEEEEEE--cCCeEEEEEecC
Q 003459 240 RTLLCGLHE-SLKVFSWEPIRCHDAVDVG-WSRLSDLNVH-EGKLLGCSY--NQSCVGVWVVDI 298 (818)
Q Consensus 240 ~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~-~~~v~~l~~~-~g~lLatg~--~Dg~V~IWdvd~ 298 (818)
.++++|+.+ .+.+|+..+......+..+ ...+..+.++ ...++++++ .|+.+++|..+.
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence 999999888 5999999987777777666 5555666654 557777776 699999997653
No 18
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.2e-32 Score=293.13 Aligned_cols=287 Identities=20% Similarity=0.388 Sum_probs=253.1
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-CCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-KPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~-~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
.+..+.+|+..|+++.|.|..+.+|++|+.|+.|+||++- .+.++.++.+|..+|..++|+++|..+++++.|+.|++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw 285 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW 285 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence 4578999999999999999889999999999999999985 489999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg 165 (818)
|+++|+++..+. ....+.|+.|+|++ +.|++|+.|+.|+.||+++++.++.|..|-+.|..+.|-++|+++++.++|+
T Consensus 286 DtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 286 DTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCc
Confidence 999999999987 55678999999999 7899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEec-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE---EEEeCCC--CCCeeEEEEeCCC
Q 003459 166 TVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL---IGSAGPE--TSGVRCLTFNPDG 239 (818)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~-h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~---i~~~~~~--~~~I~sl~fspdg 239 (818)
.++||+.+.+-.+..... +.-...++..+|++.++++-+.|+.|.+|.+...-. -..+.+| .+.-..+.|||||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 999999998866654432 334567899999999999999999999998764222 2235555 3445778999999
Q ss_pred CEEEEEECC-CEEEEEecCCceeccccccccceeeeeecC--CCEEEEEEcCCeEEEEE
Q 003459 240 RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHE--GKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 240 ~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~--g~lLatg~~Dg~V~IWd 295 (818)
.+|++|..+ .+.+|||++.+....+..+...+..+.+|. ...+|+|+.||.|++|+
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999766 599999999999888888877777777754 47799999999999996
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.4e-30 Score=264.22 Aligned_cols=247 Identities=28% Similarity=0.517 Sum_probs=228.2
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC------ceEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP------NAILSLSGHTSGIDSVSFDSSEVLVAAGAA 79 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~------~~i~~l~~h~~~V~~l~fspdg~~Lasgs~ 79 (818)
..|.+.+.--...|..++|+| .++++|+|+-|+...||++.+. .....+.+|++.+.|+.|-+|+ .|++++.
T Consensus 87 tnK~haipl~s~WVMtCA~sP-Sg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SG 164 (343)
T KOG0286|consen 87 TNKVHAIPLPSSWVMTCAYSP-SGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSG 164 (343)
T ss_pred ccceeEEecCceeEEEEEECC-CCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCC
Confidence 345566667788999999999 8889999999999999999754 4456789999999999998755 6779999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003459 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L 158 (818)
|.+..+||+++++.+..|.+|.+.|.++.+.| +++.|++|+-|+..++||++.+.++++|.+|...|++++|.|+|.-|
T Consensus 165 D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~af 244 (343)
T KOG0286|consen 165 DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAF 244 (343)
T ss_pred CceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCee
Confidence 99999999999999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEec--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003459 159 VSGGEDNTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~--h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fs 236 (818)
++|++|++.++||++..+.+..|.. ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|...|.|+..+
T Consensus 245 atGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s 324 (343)
T KOG0286|consen 245 ATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS 324 (343)
T ss_pred eecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC
Confidence 9999999999999999998888873 24579999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECC-CEEEEE
Q 003459 237 PDGRTLLCGLHE-SLKVFS 254 (818)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd 254 (818)
|||..+++|+.| .++||.
T Consensus 325 ~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 325 PDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCcEEEecchhHheeecC
Confidence 999999999988 599983
No 20
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.7e-30 Score=256.57 Aligned_cols=287 Identities=21% Similarity=0.364 Sum_probs=237.1
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEe-cCCCCCeEEEEEcCCCCEEEEEECC
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSL-SGHTSGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~---~~i~~l-~~h~~~V~~l~fspdg~~Lasgs~D 80 (818)
+...++.+.+|.+.|..++|+|..|.+||+|+.|..|++|+...+ .+...+ .+|+..|+.++|+|.|++|++|+.|
T Consensus 3 ~l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 3 RLILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred cceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 356788999999999999999943889999999999999998743 333333 3799999999999999999999999
Q ss_pred CeEEEEECCCC--eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC---CeEEEEEecCCCCeEEEEEcCCC
Q 003459 81 GTIKLWDLEEA--KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---KGCIHTYKGHTRGVNAIRFTPDG 155 (818)
Q Consensus 81 G~I~IWDl~t~--~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~---~~~i~~l~~h~~~V~~l~fspdg 155 (818)
.++.||.-..+ +++.++.||...|.+++|+++|.+||+++.|..|.||.+.. .+++..++.|...|..+.|+|..
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99999986644 68899999999999999999999999999999999999874 35788899999999999999999
Q ss_pred CEEEEEECCCeEEEEECC---CCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003459 156 RWVVSGGEDNTVKLWDLT---AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~---t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~s 232 (818)
.+|++++.|.+|++|+-. ...+..++.+|...|.+++|++.|..|++++.|++++||-..+. ....|...++.
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYD 238 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEe
Confidence 999999999999999866 34688999999999999999999999999999999999986521 12345678899
Q ss_pred EEEeCCCCEEEEE-ECCCEEEEEecCCce---e----ccccccccceeeeeecC--CCEEEEEEcCCeEEEEEec
Q 003459 233 LTFNPDGRTLLCG-LHESLKVFSWEPIRC---H----DAVDVGWSRLSDLNVHE--GKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 233 l~fspdg~~Lasg-s~d~I~Vwd~~~~~~---~----~~~~~~~~~v~~l~~~~--g~lLatg~~Dg~V~IWdvd 297 (818)
+.|. +| .|+++ +++.|++|.-...-. . .....+...+..+.... ..+|++|++||.|++|.+.
T Consensus 239 v~W~-~~-~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 239 VPWD-NG-VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eeec-cc-ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9998 55 55554 555799987653211 1 11123333445555433 6899999999999999874
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.98 E-value=1.8e-30 Score=277.38 Aligned_cols=295 Identities=17% Similarity=0.364 Sum_probs=260.8
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC--Cc--eEEEec----------CCCCCeEEEEEcCCCCEEEEEEC
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK--PN--AILSLS----------GHTSGIDSVSFDSSEVLVAAGAA 79 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~--~~--~i~~l~----------~h~~~V~~l~fspdg~~Lasgs~ 79 (818)
.|..+|.+++|+|-...+|++|+.|-..++|++.. .. ....++ ..+..|++++|+.+|.+||+|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 49999999999996666899999999999999853 11 111111 12357999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003459 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~ 159 (818)
||.+++|+. +|..+.++..|+++|.++.|+..|.||++++.|+++.+||..++.+.+.+.-|..+-..+.|-.+ ..++
T Consensus 256 ~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~-~~F~ 333 (524)
T KOG0273|consen 256 DGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN-DEFA 333 (524)
T ss_pred CcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC-ceEe
Confidence 999999995 57788899999999999999999999999999999999999999999999999988778889754 4689
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003459 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg 239 (818)
+++.||.|+++-+....++.++.+|.+.|.++.|+|.|.+|++++.|++++||..........+..|...|..+.|+|+|
T Consensus 334 ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g 413 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG 413 (524)
T ss_pred ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred ---------CEEEE-EECCCEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCceeeeecc
Q 003459 240 ---------RTLLC-GLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (818)
Q Consensus 240 ---------~~Las-gs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~ 308 (818)
..+++ +.+..+++||...+.+...+.-+..++..+.+ ++|+++|+|+.||+|.+|++.++++-.-+.+.
T Consensus 414 ~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~ 493 (524)
T KOG0273|consen 414 PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT 493 (524)
T ss_pred CccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC
Confidence 34554 45567999999999999999888889988876 89999999999999999999999987766655
Q ss_pred cc
Q 003459 309 VT 310 (818)
Q Consensus 309 ~~ 310 (818)
+.
T Consensus 494 ~~ 495 (524)
T KOG0273|consen 494 GG 495 (524)
T ss_pred Ce
Confidence 44
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=8.6e-32 Score=283.04 Aligned_cols=278 Identities=24% Similarity=0.393 Sum_probs=243.0
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~ 95 (818)
...|..|.|.| +|+.|++|+..|.+.+|+.........++.|.++|+++.|+.++.++++|+.+|.|++|+..-. .++
T Consensus 96 kc~V~~v~WtP-eGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTP-EGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVK 173 (464)
T ss_pred ccceeeEEEcC-CCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhH
Confidence 45799999999 6778999999999999997555444556789999999999999999999999999999997644 344
Q ss_pred EEcCC-CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003459 96 TLTGH-RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174 (818)
Q Consensus 96 ~l~~h-~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t 174 (818)
.+..| ...|.+++|+|....|++++.||+|+|||....+.-..+.+|...|.+++|+|....|++|+.|..|++||.++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 55555 48999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC-EEEEE-ECCCEEE
Q 003459 175 GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCG-LHESLKV 252 (818)
Q Consensus 175 ~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~-~Lasg-s~d~I~V 252 (818)
+.++.++..|...|..+.|+|++++|++++.|..+++||+++.+.+..+++|...++++.|+|-.. +|++| .++++..
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999543 44444 4557999
Q ss_pred EEecCCceeccc-cccccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 253 FSWEPIRCHDAV-DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 253 wd~~~~~~~~~~-~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
|.+...+....+ ..+-..+.++.. +=|.+|++|+.|.++++|.
T Consensus 334 ~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 334 WVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred EeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999855554443 344455666666 4589999999999999995
No 23
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=9.8e-30 Score=264.74 Aligned_cols=287 Identities=22% Similarity=0.346 Sum_probs=251.1
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
-+..|..|++.|.+++.+| +.++++||+.|..-.+|++.++.....+.+|...|+++.|+.+|.+||+|+.+|.|+||+
T Consensus 56 S~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ceeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 4678999999999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I 167 (818)
..++.....+......+.-+.|||.+..|++|+.||.|.+|.+.++...+.+.+|+.++++=.|.|+|+.++++..||+|
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti 214 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI 214 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence 99999999887777889999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCC---------------------------------------------------CCEEEEEEeC-
Q 003459 168 KLWDLTAGKLLHDFKCHE---------------------------------------------------GQIQCIDFHP- 195 (818)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~---------------------------------------------------~~I~sv~fsp- 195 (818)
++||+.++.++..+.... ..+.|+.+.|
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 999999998777665110 0011111222
Q ss_pred --CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEE-ECCCEEEEEecCCceecccccccccee
Q 003459 196 --HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRCHDAVDVGWSRLS 272 (818)
Q Consensus 196 --dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasg-s~d~I~Vwd~~~~~~~~~~~~~~~~v~ 272 (818)
.=.+.|+|+.||+|.|||+...++.+.. .|..+|..+.|-+ ..+|+++ .++.++.||..++++...+..+...+.
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il 372 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGIL 372 (399)
T ss_pred ccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchhee
Confidence 2247889999999999999987765554 4667799999998 4566655 455799999999999999999998888
Q ss_pred eeee-cCCCEEEEEEcCCeEEEEEec
Q 003459 273 DLNV-HEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 273 ~l~~-~~g~lLatg~~Dg~V~IWdvd 297 (818)
++.. ++++++++++.|+..+||++.
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEecC
Confidence 8875 889999999999999999864
No 24
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=5.5e-30 Score=260.86 Aligned_cols=286 Identities=23% Similarity=0.389 Sum_probs=253.5
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEEC-CCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl-~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
.+..+.+|.+.|+++.|+| ++.+||+|+.|..|.+|++ ...+....+++|.++|..+.|.+|++.|++++.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 4456789999999999999 7889999999999999995 6667788899999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg 165 (818)
|+++|+.++.+++|..-+..+.-..-|. ++.+|+.||++++||+++..+++++. ...+++++.|..++..+++|+-|+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccC
Confidence 9999999999999999999998655554 57788899999999999999998886 456799999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----eEEEEeCCCC----CCeeEEEEeC
Q 003459 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPET----SGVRCLTFNP 237 (818)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~----~~i~~~~~~~----~~I~sl~fsp 237 (818)
.|++||++.+...+.+.+|...|+.+..+|+|.++.+-+.|.++++||++.+ .++..+.++. -....++|+|
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 9999999999999999999999999999999999999999999999999864 3466665553 2356778999
Q ss_pred CCCEEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 238 DGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 238 dg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
+++.+.+|+.+ .+.+||....++.-.+..+...+..+.+ +...+|.+++.|.+|++=.
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 99999999777 5899999888888888888888887776 5678899999999987643
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.5e-29 Score=251.55 Aligned_cols=263 Identities=24% Similarity=0.424 Sum_probs=231.1
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGT 82 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~--~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (818)
...+..+++...+.|+.+.+.| +++.||+++. -.|++||+.++ .++.++.+|+..|+++.|..+|+.+++|+.||+
T Consensus 29 tG~C~rTiqh~dsqVNrLeiTp-dk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt 106 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEITP-DKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGT 106 (311)
T ss_pred cCeEEEEEecCccceeeEEEcC-CcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCce
Confidence 3456678887888999999999 6667887775 57999999654 468999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSG 161 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~-h~~~V~~l~fspdg~~L~sg 161 (818)
++|||++...+.+.+. |..+|.++..+|+...|++|..+|.|++||+....+...+.. ....|.++...|||.+|+.+
T Consensus 107 ~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 107 VKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred EEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEe
Confidence 9999999977766666 789999999999999999999999999999998877666543 34679999999999999999
Q ss_pred ECCCeEEEEECCCC------eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-eEEEEeCCCCCCeeEEE
Q 003459 162 GEDNTVKLWDLTAG------KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLT 234 (818)
Q Consensus 162 s~Dg~I~IwDl~t~------~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~-~~i~~~~~~~~~I~sl~ 234 (818)
...|..++|++-.. +++..|+.|.+.+..+.++|++++||+++.|.+++||+++++ +....+.+|...+++.+
T Consensus 186 nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 186 NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence 99999999998764 456778889999999999999999999999999999999998 66677889999999999
Q ss_pred EeCCCCEEEEEECC-CEEEEEecCCceeccccccccc
Q 003459 235 FNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSR 270 (818)
Q Consensus 235 fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~ 270 (818)
||.||+||++|+.+ ..++|++..++....+..+...
T Consensus 266 FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 266 FSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred eccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 99999999999776 5999999999887776665553
No 26
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=2.4e-29 Score=271.51 Aligned_cols=286 Identities=22% Similarity=0.393 Sum_probs=240.2
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS---GHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~---~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
.+..|..-|+|+.|+| ++.++++.+.||++.+||-.+++.+..+. +|.+.|.++.|+||+..|++++.|.+++|||
T Consensus 185 s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred cccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 5678999999999999 57789999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCCCeEEEE-------------------------------------------EcCCCCCeEEEEEeCCCCEEEEEECCCc
Q 003459 88 LEEAKIVRT-------------------------------------------LTGHRSNCISVDFHPFGEFFASGSLDTN 124 (818)
Q Consensus 88 l~t~~~v~~-------------------------------------------l~~h~~~V~sv~fspdg~~Lasgs~Dg~ 124 (818)
+.+.+++++ +.+|...|+++..++++++|++|+.||.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 876654333 4589999999999999999999999999
Q ss_pred EEEEECCCCeEE-----------EEE------------------------------------------------------
Q 003459 125 LKIWDIRKKGCI-----------HTY------------------------------------------------------ 139 (818)
Q Consensus 125 I~IwDl~~~~~i-----------~~l------------------------------------------------------ 139 (818)
|.-||..++..- ..+
T Consensus 344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~ 423 (603)
T KOG0318|consen 344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVA 423 (603)
T ss_pred EEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEE
Confidence 999998543210 000
Q ss_pred --------ecC--------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE--EEecCCCCEEEEEEeCCCCEEE
Q 003459 140 --------KGH--------TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH--DFKCHEGQIQCIDFHPHEFLLA 201 (818)
Q Consensus 140 --------~~h--------~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~--~~~~h~~~I~sv~fspdg~~La 201 (818)
+.+ .....+++++|++..+++|+.||.|++|.+..+.... ....|.++|++++|+|++.+||
T Consensus 424 ~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 424 CISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA 503 (603)
T ss_pred ecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE
Confidence 000 1124577889999999999999999999998755433 3446999999999999999999
Q ss_pred EEeCCCeEEEEECCCCeEEEE-eCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC-ceeccccccccceeeeeecC
Q 003459 202 TGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI-RCHDAVDVGWSRLSDLNVHE 278 (818)
Q Consensus 202 sgs~Dg~I~IwDl~t~~~i~~-~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~-~~~~~~~~~~~~v~~l~~~~ 278 (818)
+|...+.+.+||+.+.+.... +.-|...|.+++|+|+..++|+|+-| .+.||+++.- +.......+-..+..+.+.+
T Consensus 504 ~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wld 583 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLD 583 (603)
T ss_pred EeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEec
Confidence 999999999999998876433 45589999999999999999999887 5999998743 33333455555588888999
Q ss_pred CCEEEEEEcCCeEEEEEec
Q 003459 279 GKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 279 g~lLatg~~Dg~V~IWdvd 297 (818)
...+++++.|.+|++|.+.
T Consensus 584 e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 584 ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred CceEEeccCcceeEEeccc
Confidence 9999999999999999874
No 27
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=7.4e-29 Score=303.80 Aligned_cols=282 Identities=20% Similarity=0.318 Sum_probs=236.4
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----c----eEEEecCCCCCeEEEEEcC-CCCEEEEEECCC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----N----AILSLSGHTSGIDSVSFDS-SEVLVAAGAASG 81 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~----~----~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG 81 (818)
.+..|.+.|++++|+| ++.+||+|+.|+.|+||++... . ....+. +...|.+++|++ ++.+|++++.||
T Consensus 478 ~~~~~~~~V~~i~fs~-dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 478 DLLNSSNLVCAIGFDR-DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cccCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence 4556999999999999 6779999999999999997531 1 222333 356899999987 478999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEc-CCCCEEE
Q 003459 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT-PDGRWVV 159 (818)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fs-pdg~~L~ 159 (818)
+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||++++.++..+..+ ..+.++.|+ ++|.+|+
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLA 634 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEE
Confidence 999999999999999999999999999997 7889999999999999999999998888755 579999995 5799999
Q ss_pred EEECCCeEEEEECCCCe-EEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC------CeEEEEeCCCCCCeeE
Q 003459 160 SGGEDNTVKLWDLTAGK-LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVRC 232 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~-~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t------~~~i~~~~~~~~~I~s 232 (818)
+|+.||.|++||++.++ .+..+.+|...|.++.|. ++.+|++++.|++|++||+.. ++.+..+.+|...+.+
T Consensus 635 tgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 635 FGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 99999999999998765 567778899999999997 678999999999999999974 3577888999999999
Q ss_pred EEEeCCCCEEEEEECC-CEEEEEecCCceecc-------------ccccccceeeeee-cCCCEEEEEEcCCeEEEEEe
Q 003459 233 LTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA-------------VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~-------------~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdv 296 (818)
+.|++++.+|++|+.+ .+.+|+......... ...+...+..+.+ +++..|++|+.||.|+||++
T Consensus 714 v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 714 VGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999999876 599998754322110 0111233556655 68899999999999999986
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=3.7e-29 Score=279.21 Aligned_cols=294 Identities=21% Similarity=0.429 Sum_probs=251.4
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCC-CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGED-HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~D-g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
.++.+.-...+|..++|+. .|.+||.|+.. |.+-||++.....+...++|...+++++++|||.++++|+.||+|+||
T Consensus 299 lih~LSis~~~I~t~~~N~-tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW 377 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNS-TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVW 377 (893)
T ss_pred EEEEeecccceeeEEEecc-cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence 4455555667899999997 56677777654 899999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEECCC
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RGVNAIRFTPDGRWVVSGGEDN 165 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~-~~V~~l~fspdg~~L~sgs~Dg 165 (818)
|..++-+..+|..|.+.|+.+.|+..|+.+++.+.||+|+.||+...+..++|.... -...|++..|.|..+++|+.|.
T Consensus 378 n~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~ 457 (893)
T KOG0291|consen 378 NTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDS 457 (893)
T ss_pred eccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccce
Confidence 999999999999999999999999999999999999999999999999999987543 4567899999999999999987
Q ss_pred e-EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEE
Q 003459 166 T-VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLL 243 (818)
Q Consensus 166 ~-I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~-~i~~~~~~~~~I~sl~fspdg~~La 243 (818)
. |++|++.+|+.+..+.+|+++|.+++|+|++..|++|+.|.+|++||+-... .+..+ .....+..++|.|||+.|+
T Consensus 458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELA 536 (893)
T ss_pred EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEE
Confidence 5 9999999999999999999999999999999999999999999999986542 33333 3456789999999999999
Q ss_pred EEECC-CEEEEEecCCceeccc--------------------cccccceeeee-ecCCCEEEEEEcCCeEEEEEecCCCc
Q 003459 244 CGLHE-SLKVFSWEPIRCHDAV--------------------DVGWSRLSDLN-VHEGKLLGCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 244 sgs~d-~I~Vwd~~~~~~~~~~--------------------~~~~~~v~~l~-~~~g~lLatg~~Dg~V~IWdvd~~~~ 301 (818)
+++-+ .|.+||.+.......+ ......++.+. ..||..+++|+....|++|++..+-+
T Consensus 537 VaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 537 VATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred EEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhe
Confidence 88766 6999998754332111 11123344454 47999999999999999999998875
Q ss_pred ee
Q 003459 302 EP 303 (818)
Q Consensus 302 ~~ 303 (818)
..
T Consensus 617 lk 618 (893)
T KOG0291|consen 617 LK 618 (893)
T ss_pred ee
Confidence 44
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=5.7e-29 Score=277.67 Aligned_cols=289 Identities=25% Similarity=0.418 Sum_probs=260.7
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCC
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS-GTIKLWDLEEA 91 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D-G~I~IWDl~t~ 91 (818)
......|+|.+|++ +.++||+|-..|...+|.+.....++.+.-....|..+.|+..|..|+.|+.. |.+-||++.+.
T Consensus 262 n~~~~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE 340 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE 340 (893)
T ss_pred cccccceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence 33447899999999 88899999999999999999999999999888899999999999999998775 89999999999
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 92 ~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
..+...++|...+.+++++|||+++++|+.||.|+|||...+-|+.+|..|...|+.++|+..|+.+++++-||+|+.||
T Consensus 341 sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 341 SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWD 420 (893)
T ss_pred ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecC-CCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-
Q 003459 172 LTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSADR-TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE- 248 (818)
Q Consensus 172 l~t~~~i~~~~~h-~~~I~sv~fspdg~~Lasgs~Dg-~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d- 248 (818)
+...+...+|... .....|++..|.|.++++|+.|. .|.+|++++|+++..+.+|.++|.+++|+|+|..|++|+.|
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 9999999998853 34578899999999999999887 69999999999999999999999999999999999999877
Q ss_pred CEEEEEecCC-ceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCce
Q 003459 249 SLKVFSWEPI-RCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 249 ~I~Vwd~~~~-~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
++++|++-.. .....+.+....+...+.|+|+-|+++.-||.|.+||+......
T Consensus 501 TVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 501 TVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred eEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 6999997543 34455555555555555689999999999999999998876644
No 30
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.4e-30 Score=281.25 Aligned_cols=294 Identities=20% Similarity=0.406 Sum_probs=270.2
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (818)
+|..|...|.|+.|+| ...+++++-.+|.|.||+.++...+..+....-+|++..|-+..+.+++|+.|..|++|+..+
T Consensus 8 k~~~rSdRVKsVd~HP-tePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHP-TEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred HhhccCCceeeeecCC-CCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 4666999999999999 777899999999999999999999999998899999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEE
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVK 168 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~ 168 (818)
++.+..|..|.+.|.+++.||...++++++.|-.|++||.+.. .+.++|.+|...|.+++|.| |.+.+++++-|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 9999999999999999999999999999999999999999754 68889999999999999999 778999999999999
Q ss_pred EEECCCCeEEEEEecCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHE--FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sv~fspdg--~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
+|.+.+..+..++++|...|+|++|-+.| .+|++|+.|.+|+|||.++..++.++.+|...|..+.|+|.=..+++|+
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 99999999999999999999999999855 6999999999999999999999999999999999999999999999998
Q ss_pred CC-CEEEEEecCCceeccccccccceeeeeec-CCCEEEEEEcCCeEEEEEecCCCceeeeecc
Q 003459 247 HE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVH-EGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (818)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~-~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~ 308 (818)
+| +++||.-.+.+....+..+...+.++..+ .+..++.|++.|.|. +..++..|.+...
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~---v~lgreeP~vsMd 307 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT---VKLGREEPAVSMD 307 (794)
T ss_pred CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE---EEccCCCCceeec
Confidence 87 59999999999999999999998888864 456688999988774 3566666655443
No 31
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.3e-28 Score=266.05 Aligned_cols=292 Identities=19% Similarity=0.333 Sum_probs=246.5
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
+-++.+|...|++++|-|.....++||++|+.|.+|+-.-.+--.++..|..-|.|+.|+|||.++++++.||+|.+||-
T Consensus 140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDG 219 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDG 219 (603)
T ss_pred cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcC
Confidence 45788999999999999988888999999999999996666666777889999999999999999999999999999999
Q ss_pred CCCeEEEEEc---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE---------------------------
Q 003459 89 EEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT--------------------------- 138 (818)
Q Consensus 89 ~t~~~v~~l~---~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~--------------------------- 138 (818)
.+++.+..+. +|++.|.++.|+||+..|++++.|.+++|||+.+.+++.+
T Consensus 220 ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~ 299 (603)
T KOG0318|consen 220 KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLS 299 (603)
T ss_pred CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcC
Confidence 9999999998 8999999999999999999999999999999976554433
Q ss_pred ----------------EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-----------EEE-----------
Q 003459 139 ----------------YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL-----------LHD----------- 180 (818)
Q Consensus 139 ----------------l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~-----------i~~----------- 180 (818)
+.+|...|+++..++++.+|++|+.||.|.-||..+|.. +..
T Consensus 300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 347999999999999999999999999999999865410 000
Q ss_pred ---------E------------------------------------------ecC--------CCCEEEEEEeCCCCEEE
Q 003459 181 ---------F------------------------------------------KCH--------EGQIQCIDFHPHEFLLA 201 (818)
Q Consensus 181 ---------~------------------------------------------~~h--------~~~I~sv~fspdg~~La 201 (818)
+ +.+ .....+++++|++..++
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 0 000 01235678899999999
Q ss_pred EEeCCCeEEEEECCCCeEE--EEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceec-cccccccceeeeee-
Q 003459 202 TGSADRTVKFWDLETFELI--GSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD-AVDVGWSRLSDLNV- 276 (818)
Q Consensus 202 sgs~Dg~I~IwDl~t~~~i--~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~-~~~~~~~~v~~l~~- 276 (818)
.|+.||.|++|.+...... .....|.++|++++|+||+.||++|... .+.+||........ .+..+...+.++.+
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWS 539 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeC
Confidence 9999999999999876543 3467789999999999999999999655 59999999877632 23445667777776
Q ss_pred cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 277 HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 277 ~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
++++++|+|+-|.+|.||.++-..
T Consensus 540 P~n~~vATGSlDt~Viiysv~kP~ 563 (603)
T KOG0318|consen 540 PNNKLVATGSLDTNVIIYSVKKPA 563 (603)
T ss_pred CCceEEEeccccceEEEEEccChh
Confidence 889999999999999999987544
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=5.7e-30 Score=265.12 Aligned_cols=251 Identities=24% Similarity=0.412 Sum_probs=239.5
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEEC
Q 003459 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (818)
Q Consensus 51 ~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 130 (818)
....+.+|.+.|.|+++.|...+|++|+.|++|+|||+.+|+...++.||...|..+++++...|+++++.|+.|+.||+
T Consensus 143 l~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 143 LYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred ehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003459 131 RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (818)
Q Consensus 131 ~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~ 210 (818)
...+.++.|-+|-..|.|++.+|.-..|++|+.|.++++||+++...+..+.+|..+|..+.+.|-...+++|+.|++|+
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvr 302 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVR 302 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred EEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCe
Q 003459 211 FWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSC 290 (818)
Q Consensus 211 IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~ 290 (818)
+||+..++....+..|.-.+++++.+|....+++++.|.|+-|++..+.....+..+...+..+.+....++++|++.|.
T Consensus 303 lWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~ 382 (460)
T KOG0285|consen 303 LWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGS 382 (460)
T ss_pred EeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceE
Confidence 99999999999999999999999999999999999999999999999888877888888899999999999999999999
Q ss_pred EEEEEecCCCc
Q 003459 291 VGVWVVDISRI 301 (818)
Q Consensus 291 V~IWdvd~~~~ 301 (818)
+.+||-..+--
T Consensus 383 ~~fwdwksg~n 393 (460)
T KOG0285|consen 383 IMFWDWKSGHN 393 (460)
T ss_pred EEEEecCcCcc
Confidence 99999887753
No 33
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=3.7e-31 Score=278.26 Aligned_cols=242 Identities=28% Similarity=0.590 Sum_probs=221.6
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~-h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (818)
+++|.+.|.++.|++ ++.++++|+.+|.|++|+..-.. ++.+.+ |...|++++|+|+...|++++.||+|+|||...
T Consensus 134 lQaHDs~Vr~m~ws~-~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~ 211 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSH-NGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM 211 (464)
T ss_pred hhhhcccceeEEEcc-CCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence 468999999999999 78899999999999999975443 444454 459999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~Iw 170 (818)
.+....+.+|.-.|.+++|+|....|++|+.|..|++||.+++.|+.++.+|+..|..+.|++++++|++++.|..++++
T Consensus 212 ~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~ 291 (464)
T KOG0284|consen 212 PKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVF 291 (464)
T ss_pred CchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEEECC
Q 003459 171 DLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sv~fsp-dg~~Lasgs~Dg~I~IwDl~t~~~i~~~-~~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
|+++.+.+..+++|...++++.|+| +..+|.+|+.||.|..|.+...+++..+ .+|...|++++|+|=|.+|++|+.+
T Consensus 292 DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 292 DIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSND 371 (464)
T ss_pred ehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCC
Confidence 9999999999999999999999999 5779999999999999999866666554 5678899999999999999999877
Q ss_pred -CEEEEEe
Q 003459 249 -SLKVFSW 255 (818)
Q Consensus 249 -~I~Vwd~ 255 (818)
.+++|.-
T Consensus 372 ~t~rfw~r 379 (464)
T KOG0284|consen 372 RTVRFWTR 379 (464)
T ss_pred cceeeecc
Confidence 5888864
No 34
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.7e-29 Score=282.20 Aligned_cols=284 Identities=25% Similarity=0.477 Sum_probs=252.7
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
.|.+|..|.++|..++|+| .+.++++||+|-+|++|+..+.+++.++.||-+.|..+.|++.-..|++++.|.+|+||+
T Consensus 43 li~rFdeHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWN 121 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWN 121 (1202)
T ss_pred HHhhhhccCCccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEe
Confidence 4567889999999999999 788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-----------------------------eEEEE
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-----------------------------GCIHT 138 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-----------------------------~~i~~ 138 (818)
+.+++++..+.||...|.|..|+|....+++++.|-+|++||+..- -..+.
T Consensus 122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 9999999999999999999999999999999999999999998421 02345
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 003459 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL--LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 139 l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~--i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t 216 (818)
+.+|...|+.++|+|.-..|++|++|..|++|.+...+. +.+..+|...|.++-|||...++++.++|++|++||+..
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 679999999999999999999999999999999886553 334568999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEe
Q 003459 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 217 ~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdv 296 (818)
.+.+.+++......+.++-+|..+++++|.+.++.||.++-.+.. .+.+++.++.+- |..|+.+|+
T Consensus 282 Rt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa------------~~v~~n~LfYvk--d~~i~~~d~ 347 (1202)
T KOG0292|consen 282 RTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPA------------YAVNGNGLFYVK--DRFIRSYDL 347 (1202)
T ss_pred ccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCce------------EEEcCCEEEEEc--cceEEeeec
Confidence 999999988889999999999999999999999999998855432 233555666555 888999999
Q ss_pred cCCCceeeee
Q 003459 297 DISRIEPYTI 306 (818)
Q Consensus 297 d~~~~~~~~~ 306 (818)
.+.+-.++..
T Consensus 348 ~t~~d~~v~~ 357 (1202)
T KOG0292|consen 348 RTQKDTAVAS 357 (1202)
T ss_pred cccccceeEe
Confidence 8866555443
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.3e-29 Score=282.59 Aligned_cols=293 Identities=24% Similarity=0.392 Sum_probs=262.5
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
..|..-+..|..++|+| ...++.++-..|.|.+||..-+.++..|..|.++|.+++|+|++.++++|+.|..|++|+..
T Consensus 3 tkfEskSsRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred chhhcccccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 35666778899999999 67789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (818)
Q Consensus 90 t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~I 169 (818)
+.+++.++.+|.+.|..+.|++.-..|++++.|.+|+||+..+++++..+.+|...|.|.+|+|....+++++-|.+|++
T Consensus 82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCC--------C---------------------eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe--
Q 003459 170 WDLTA--------G---------------------KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE-- 218 (818)
Q Consensus 170 wDl~t--------~---------------------~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~-- 218 (818)
||+.. + -.-+.+.+|+..|+-++|+|.-.++++|+.|..|++|.+..-+
T Consensus 162 WDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 162 WDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW 241 (1202)
T ss_pred EeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce
Confidence 99852 1 0123456899999999999999999999999999999987544
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEec
Q 003459 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 219 ~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd 297 (818)
.+.+..+|.+.|.++-|+|...++++.++| .|+|||++..++.+++......+..+..|..--|..++.|+-+.||.++
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLE 321 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEc
Confidence 355678999999999999999999988777 6999999999999999888888888888765555566677778888888
Q ss_pred CCCcee
Q 003459 298 ISRIEP 303 (818)
Q Consensus 298 ~~~~~~ 303 (818)
-.+..-
T Consensus 322 RErpa~ 327 (1202)
T KOG0292|consen 322 RERPAY 327 (1202)
T ss_pred ccCceE
Confidence 655444
No 36
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.3e-30 Score=268.49 Aligned_cols=273 Identities=22% Similarity=0.483 Sum_probs=234.7
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV 94 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v 94 (818)
....|+|+.+. ...+++|..|.+|+|||..+-.+...+.||++.|.|+.|. .+.|++|+.|.+|++||+++++++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence 45689999994 3459999999999999999999999999999999999984 569999999999999999999999
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 95 RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG---CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 95 ~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~---~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
.++-+|...|..+.|+ ..++++++.|.+|.+||+.... +.+.+.+|...|+.+.|+ .+++++++.|.+|++|+
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWS 346 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEe
Confidence 9999999999999998 5799999999999999997654 334567999999999997 56999999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CE
Q 003459 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SL 250 (818)
Q Consensus 172 l~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I 250 (818)
+.+++.+.++.+|...|.|+.+ .++++++|+.|.+|++||+..|.++..+++|..-|+|+.|. .+.+++|..| .|
T Consensus 347 ~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGki 422 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKI 422 (499)
T ss_pred ccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceE
Confidence 9999999999999999999876 58899999999999999999999999999999999999995 5567777555 69
Q ss_pred EEEEecCCcee---------ccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCc
Q 003459 251 KVFSWEPIRCH---------DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 251 ~Vwd~~~~~~~---------~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~ 301 (818)
+|||+...... .....+.+.+..+-+ |...+++++.|.+|-|||+..+..
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF-D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF-DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEee-cceEEEeccCCCeEEEEEcCCCCc
Confidence 99999865433 223333444444444 445667778899999999887653
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=7.2e-28 Score=251.65 Aligned_cols=246 Identities=35% Similarity=0.683 Sum_probs=227.1
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
.+..+..|...+.++.|+| ++.++++++.||.|++|++.+++.+..+..|...|.++.|++++.++++++.+|.|.+||
T Consensus 43 ~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~ 121 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121 (289)
T ss_pred cEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 3456788999999999999 557899999999999999998888888999999999999999988998888899999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I 167 (818)
+.+++....+..|...+.+++|+|++.++++++.||.|++||+++++.+..+..|...+.++.|+|+++.+++++.+|.|
T Consensus 122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 201 (289)
T cd00200 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTI 201 (289)
T ss_pred CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcE
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003459 168 KLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (818)
++||++.++.+..+..|...+.++.|+|++.++++++.||.|++||+.+++.+..+..|...+.++.|++++.+|++++.
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred EEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecC
Confidence 99999999999988788889999999999999999888999999999999999988888889999999999999998877
Q ss_pred C-CEEEEE
Q 003459 248 E-SLKVFS 254 (818)
Q Consensus 248 d-~I~Vwd 254 (818)
+ .+++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 6 588884
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2e-28 Score=241.73 Aligned_cols=283 Identities=21% Similarity=0.319 Sum_probs=245.2
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
.++..+..|+++|..+.|+- +++|.++++.|.+|++|+...+.+++++.+|...|..++.+.|...|++|+.|..|.+|
T Consensus 8 kr~~~l~~~qgaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVW 86 (307)
T ss_pred hhceeecccccceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEE
Confidence 46677889999999999998 77889999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK--GCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~--~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D 164 (818)
|+.+|+.++.+.+|...|..+.|+.+...+++|+.|..+++||.++. ++++.+......|.++... +..|++|+.|
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred EcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 99999999999999999999999999999999999999999999854 6788888888889999887 6789999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCe--eEEEEeCCCCEE
Q 003459 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV--RCLTFNPDGRTL 242 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I--~sl~fspdg~~L 242 (818)
|+++.||++.|.....+- ..+|+|++|+++++.+++++.|+++++.|-.+|+++..+.+|...- ...+++.....+
T Consensus 165 GtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred CcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 999999999998877665 4689999999999999999999999999999999999999986643 445677777889
Q ss_pred EEEECCC-EEEEEecCCceeccccccccc-eeeeeecCCC-EEEEEEcCCeEEEEE
Q 003459 243 LCGLHES-LKVFSWEPIRCHDAVDVGWSR-LSDLNVHEGK-LLGCSYNQSCVGVWV 295 (818)
Q Consensus 243 asgs~d~-I~Vwd~~~~~~~~~~~~~~~~-v~~l~~~~g~-lLatg~~Dg~V~IWd 295 (818)
++|++|+ +.+||+........+.++... +.++..|... -|.++ .++.+..|.
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A-~~~~~~~~~ 297 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITA-TGHGDLFWY 297 (307)
T ss_pred EeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEe-cCCceecee
Confidence 9998886 888998887777766666655 6677765432 23332 334455553
No 39
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.4e-28 Score=282.18 Aligned_cols=247 Identities=25% Similarity=0.553 Sum_probs=224.9
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEEC-CCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl-~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
.++.+.+|...|++++|+| ++.++++|+.|++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|+||
T Consensus 195 ~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIW 273 (456)
T ss_pred hhccccccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEE
Confidence 3456689999999999999 6679999999999999999 5668999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe--EEEEEecCCCC--eEEEEEcCCCCEEEEEE
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRG--VNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~--~i~~l~~h~~~--V~~l~fspdg~~L~sgs 162 (818)
|+++++++..+.+|...|.+++|++++.+|++++.|+.|++||+.++. ++..+..+... +++++|+|++.++++++
T Consensus 274 d~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 274 DVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred eccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999998 66777776655 99999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCC---EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCC
Q 003459 163 EDNTVKLWDLTAGKLLHDFKCHEGQ---IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPD 238 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~---I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~-~~~I~sl~fspd 238 (818)
.|+.+++||+..+..+..+.+|... +.+..+++.+.++++|+.|+.|++||+.++..+..+.+| ...+..+.|++.
T Consensus 354 ~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~ 433 (456)
T KOG0266|consen 354 LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPT 433 (456)
T ss_pred CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCC
Confidence 9999999999999999999988775 334455678999999999999999999999999999999 888999999999
Q ss_pred CCEEEEEE---CCCEEEEEe
Q 003459 239 GRTLLCGL---HESLKVFSW 255 (818)
Q Consensus 239 g~~Lasgs---~d~I~Vwd~ 255 (818)
..++++++ +..+++|..
T Consensus 434 ~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 434 ENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred cCeeeecCcCCCceEEEecC
Confidence 99999876 335777754
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.4e-28 Score=274.85 Aligned_cols=292 Identities=25% Similarity=0.413 Sum_probs=257.1
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
....+.|..+.|..++|--...++||.++..+.+++|++.+..+. .+.||+..|.++....+|.+|++|+.|.++++|.
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEE
Confidence 345677889999999986547789999999999999999877776 7899999999999666778999999999999998
Q ss_pred CCCCe----EEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCe-----EEE----EEecCCCCeEEEEEcC
Q 003459 88 LEEAK----IVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKG-----CIH----TYKGHTRGVNAIRFTP 153 (818)
Q Consensus 88 l~t~~----~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~-----~i~----~l~~h~~~V~~l~fsp 153 (818)
++++. ++....+|...|.+++++..+ .+|++++.|++|++|++...+ .+. +...|...|+|++++|
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 85443 455667999999999997655 489999999999999997622 111 2346999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003459 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL 233 (818)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl 233 (818)
+.+.+++|+.|.+.+||++.......++.+|...|+|+.|+|+..++++++.|++|+||.+.++.++.++.+|...|...
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA 553 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 234 TFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 234 ~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
.|-.+|+.|++++.+ -+++|+..+..|...++.|...+..+.. +....+++|+.||.|.+|.=.+..
T Consensus 554 ~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 554 SFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred eeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 999999999977655 4999999999999999999999888875 677899999999999999544443
No 41
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.8e-29 Score=259.42 Aligned_cols=245 Identities=26% Similarity=0.465 Sum_probs=232.1
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~-~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
...+++|.+.|..++|+. .+++|++++.|-.+++||.++ .+++..+.+|...|.+++|-|.|.+|++++.|.+|+.|+
T Consensus 143 e~~LrGHt~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDA-SGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred hhhhhccccceeEEEEec-CccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence 456789999999999998 778999999999999999976 678888899999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC-------------
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD------------- 154 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd------------- 154 (818)
+.++-++.++.+|...|..+..+.||..+++++.|.+|++|-+.++++...++.|..+|.|++|-|.
T Consensus 222 ~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred cccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999762
Q ss_pred --CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003459 155 --GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (818)
Q Consensus 155 --g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~s 232 (818)
+.++++++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++..|+++++||+++++++..+..|...+++
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS 381 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence 358999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEEECC-CEEEEE
Q 003459 233 LTFNPDGRTLLCGLHE-SLKVFS 254 (818)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd 254 (818)
+.|+.+..++++|+-+ .+++|.
T Consensus 382 lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 382 LDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EecCCCCceEEeccccceeeeee
Confidence 9999999999999876 688885
No 42
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-27 Score=240.42 Aligned_cols=286 Identities=20% Similarity=0.292 Sum_probs=247.8
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (818)
.+++|..+++.+.|+. ++.+|++++.|.+..+|-..+|+.+-++.||++.|+|+..+.+.+++++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC
Confidence 4689999999999998 778999999999999999889999999999999999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-----CCcEEEEECC-------CCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSL-----DTNLKIWDIR-------KKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~-----Dg~I~IwDl~-------~~~~i~~l~~h~~~V~~l~fspdg~~L 158 (818)
|+++.++. ....|..+.|+++|++++.... .+.|.++|++ ..+++..+..+...++.+-|.|-+++|
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 99999998 6788999999999998877654 3689999998 456788888888999999999999999
Q ss_pred EEEECCCeEEEEECCCCeE-EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003459 159 VSGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fsp 237 (818)
++|..||.|.+||+++|+. +...+.|...|+.++++++..++++++.|.+-++||..+.+.+.++.. ..+|++.+++|
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP 241 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISP 241 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccceeccc
Confidence 9999999999999999854 444567999999999999999999999999999999999999988865 47899999999
Q ss_pred CCCEEEEEECC-CEEE--EEecCC------------ceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCC
Q 003459 238 DGRTLLCGLHE-SLKV--FSWEPI------------RCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 238 dg~~Lasgs~d-~I~V--wd~~~~------------~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
-...++.|+.. -.-| -+-..+ +.+..+..++.++..+.+ ++|+..++|++||.|++.-++..
T Consensus 242 ~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 242 LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 87777766433 1111 111112 223346889999999887 68999999999999999877654
No 43
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.3e-28 Score=264.45 Aligned_cols=254 Identities=24% Similarity=0.455 Sum_probs=234.5
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83 (818)
Q Consensus 4 ~r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (818)
.+...++.|.-..-+|.+..|-+ ..+++++|++|..|+||+.++++.+..|..|.+.|+|++.+|...++++++.|-+|
T Consensus 43 etqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~i 121 (794)
T KOG0276|consen 43 ETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTI 121 (794)
T ss_pred ccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEE
Confidence 34455667778888999999998 78899999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCC-eEEEEEcCCCCCeEEEEEeCC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEEE
Q 003459 84 KLWDLEEA-KIVRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP--DGRWVV 159 (818)
Q Consensus 84 ~IWDl~t~-~~v~~l~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp--dg~~L~ 159 (818)
++||++.. .+.++|.||...|.+++|.|. .+.|++++.|++|++|.+.+..+..++++|...|+|+.|-+ |..+|+
T Consensus 122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence 99999864 688999999999999999995 46899999999999999999999999999999999999987 446999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003459 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg 239 (818)
+|++|..|+|||..+..++.++.+|...|..+.|+|.-.++++|++||+++||+..+.++...+.-....++|++-.+.+
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~ 281 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGD 281 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988888778899999999999
Q ss_pred CEEEEEECCCEEEEEecCC
Q 003459 240 RTLLCGLHESLKVFSWEPI 258 (818)
Q Consensus 240 ~~Lasgs~d~I~Vwd~~~~ 258 (818)
..+++|.+++..+..+...
T Consensus 282 ~~i~vG~Deg~i~v~lgre 300 (794)
T KOG0276|consen 282 GKIAVGFDEGSVTVKLGRE 300 (794)
T ss_pred CeEEEeccCCcEEEEccCC
Confidence 9999999988777665433
No 44
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.8e-28 Score=256.49 Aligned_cols=286 Identities=16% Similarity=0.299 Sum_probs=244.5
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~---~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
.+.+..|.+.|+-+.|++ +|++||+++.|.+..+|.+... +..+++.+|..+|..+.|+||.++|++++.+..+.+
T Consensus 217 ~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 356789999999999999 8889999999999999988443 347788899999999999999999999999999999
Q ss_pred EECCCCeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEEC
Q 003459 86 WDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 86 WDl~t~~~v~~l~-~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~-~~V~~l~fspdg~~L~sgs~ 163 (818)
||+.+|.....+. ++...+.+++|.|||..+++|+.|+.|..||+.. ..+..+++-. ..|.+++.++||+++++.+.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 9999999887775 3467899999999999999999999999999864 4454554433 55999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCC--eeEEEEeC-CCC
Q 003459 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG--VRCLTFNP-DGR 240 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~--I~sl~fsp-dg~ 240 (818)
|..|++|+..+......+. ...+|++++.+.+++++++.-.+..+++||++..+.+..+.+|... +..-+|-- +..
T Consensus 375 d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred ccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 9999999988765554443 4678999999999999999999999999999998888888888554 33334543 457
Q ss_pred EEEEEECC-CEEEEEecCCceeccccccccceeeeee--cCCCEEEEEEcCCeEEEEEec
Q 003459 241 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~--~~g~lLatg~~Dg~V~IWdvd 297 (818)
++++|++| .++||+-..++...++..+...+.++.+ .+-.++|++++||+|+||-..
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 89999988 4999999999999999998888888776 456889999999999999654
No 45
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=5.8e-28 Score=269.84 Aligned_cols=307 Identities=26% Similarity=0.487 Sum_probs=253.2
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCC-cEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 4 KRAYKLQEFVAHSSTVNCLKIGRKSS-RVLVTGGEDHKVNLWAIGKP-NAILSLSGHTSGIDSVSFDSSEVLVAAGAASG 81 (818)
Q Consensus 4 ~r~~kl~~~~~H~~~V~~lafsp~~~-~lLatgs~Dg~V~lWdl~~~-~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG 81 (818)
+..+.+..|+||.+.|..+.|+|+-. .+|++|..|+.+++||+.+. .++..+..|.+.|++++|.+|+..+++++.|.
T Consensus 135 ~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDk 214 (775)
T KOG0319|consen 135 KNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDK 214 (775)
T ss_pred eCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCc
Confidence 45678899999999999999999543 36899999999999999744 45778889999999999999988888888998
Q ss_pred eEEEEECCCCeE--------------------------EE----------------------------------------
Q 003459 82 TIKLWDLEEAKI--------------------------VR---------------------------------------- 95 (818)
Q Consensus 82 ~I~IWDl~t~~~--------------------------v~---------------------------------------- 95 (818)
.|.+||+.+.+. +.
T Consensus 215 vi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~ 294 (775)
T KOG0319|consen 215 VIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMS 294 (775)
T ss_pred EEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccC
Confidence 888888632100 00
Q ss_pred -----------------------------------------------------------------EEcCCCCCeEEEEEe
Q 003459 96 -----------------------------------------------------------------TLTGHRSNCISVDFH 110 (818)
Q Consensus 96 -----------------------------------------------------------------~l~~h~~~V~sv~fs 110 (818)
.+.+|...|.++...
T Consensus 295 ~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 295 QLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVW 374 (775)
T ss_pred ceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeec
Confidence 023566666677644
Q ss_pred CCCCEEEEEECCCcEEEEECCCC----eEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCe-----EEE-
Q 003459 111 PFGEFFASGSLDTNLKIWDIRKK----GCIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGK-----LLH- 179 (818)
Q Consensus 111 pdg~~Lasgs~Dg~I~IwDl~~~----~~i~~l~~h~~~V~~l~fspdg-~~L~sgs~Dg~I~IwDl~t~~-----~i~- 179 (818)
.+|.+|++|+.|.++++|.++.+ -++....+|.+.|.+++++..+ .+|++++.|++|++|++...+ .+.
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 56778999999999999977433 2456677999999999997643 589999999999999998622 111
Q ss_pred ---EEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003459 180 ---DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 180 ---~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
....|...|+|++++|+..++|+|+.|.+.+||+++....+..+.+|..+|+|+.|++..+.+++++.| +++||.+
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEe
Confidence 223699999999999999999999999999999999999999999999999999999999999988777 6999999
Q ss_pred cCCceecccccccccee-eeeecCCCEEEEEEcCCeEEEEEecCCCceeeeecccc
Q 003459 256 EPIRCHDAVDVGWSRLS-DLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVT 310 (818)
Q Consensus 256 ~~~~~~~~~~~~~~~v~-~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~~~ 310 (818)
++..|.+.+..+.+.+. ..+..+|+.|++++.||-|++|++.++....-...+.-
T Consensus 535 s~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~D 590 (775)
T KOG0319|consen 535 STFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHND 590 (775)
T ss_pred ccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccc
Confidence 99999999997776544 44568899999999999999999999998875444443
No 46
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=5.6e-28 Score=240.24 Aligned_cols=289 Identities=18% Similarity=0.347 Sum_probs=261.0
Q ss_pred EEEecCCCCEEEEEEee--CCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 10 QEFVAHSSTVNCLKIGR--KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp--~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
....+|+.+|..++|+| .++.+|++++.||.-.+-+-+++..+-+|.+|.+.|+....+.+...-++++.|=+-++||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 46889999999999987 4688999999999999999999999999999999999999999988999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
.-+|..+..|. |+.-|..++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|..+.|....+.|+++..|++
T Consensus 88 a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 99999999988 99999999999999999999999999999998654 56778899999999999998899999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
|++||.++++.++.+. ...+|+++.++++|.+|.++. .+.|.+||..++.++..+... ..|.+..++|+...+++|+
T Consensus 167 VRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k~P-~nV~SASL~P~k~~fVaGg 243 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYKMP-CNVESASLHPKKEFFVAGG 243 (334)
T ss_pred eEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeeccCc-cccccccccCCCceEEecC
Confidence 9999999999999988 478899999999998887765 578999999999999887654 5588999999998888887
Q ss_pred CC-CEEEEEecCCceeccc-cccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCce
Q 003459 247 HE-SLKVFSWEPIRCHDAV-DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~-~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
++ .+..||++++.....+ ..++.++.++.+ ++|.+.++|++||+|++|.+..++..
T Consensus 244 ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 77 4888999999888775 788899988876 89999999999999999988877743
No 47
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=2.5e-28 Score=249.54 Aligned_cols=280 Identities=21% Similarity=0.376 Sum_probs=244.8
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEe--------cCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL--------SGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l--------~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
+..+-+.|..|+| ++++|++|+.||-|.+|++-+|+....+ --+..+|.|+.|+.|..++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSP-DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSP-DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCC-CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence 4566788999999 7789999999999999999888765443 347889999999999999999999999999
Q ss_pred EECCCCeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003459 86 WDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 86 WDl~t~~~v~~l~-~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D 164 (818)
|.+++|.+++.|. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++..+++|...|+...|.+||.++++++.|
T Consensus 290 Wri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD 369 (508)
T KOG0275|consen 290 WRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD 369 (508)
T ss_pred EEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence 9999999999997 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEec--CCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeEEEEeCC---CCCCeeEEEEeCC
Q 003459 165 NTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGP---ETSGVRCLTFNPD 238 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~--h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~i~~~~~---~~~~I~sl~fspd 238 (818)
|+|++|+..+.+++.+|+. .+.+|+++..-|. ...++++...++|+|.++. |+.+..+.. ..+...+.+.+|.
T Consensus 370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpk 448 (508)
T KOG0275|consen 370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPK 448 (508)
T ss_pred ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCC
Confidence 9999999999999999984 4567888888774 5678888889999999986 667766633 3556778889999
Q ss_pred CCEEEEEECCC-EEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 239 GRTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 239 g~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
|.++++.++|+ +.-|.+.+++....+.++...+-.+.. +..+++++-++||.+.+|.
T Consensus 449 GewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 449 GEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred CcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 99999887775 777788888888888887776666665 4567888999999999994
No 48
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=265.97 Aligned_cols=280 Identities=27% Similarity=0.482 Sum_probs=249.8
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE-ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~-l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~ 93 (818)
|...+.|..|.. .++++++.|.+|++|+..++..+.. +.+|.+.|.+++|...+.++++|+.|.++++||..+|++
T Consensus 207 ~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred Ccchhhhheeec---CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 567889999973 4699999999999999999999888 999999999999987788999999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (818)
Q Consensus 94 v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~ 173 (818)
..++.+|...+.++... ..++++|+.|.+|++|++.++.++..+.+|..+|.++.++ +.++++|+.||+|++||+.
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999999999998876 5678889999999999999999999999999999999998 8899999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEE
Q 003459 174 AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLK 251 (818)
Q Consensus 174 t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~-~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~ 251 (818)
++++++.+.+|...|+++.+... ..+++|+.|++|++||+++. +++..+..|..-+.++.+ .+++|++++.+ .|+
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIK 436 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEE
Confidence 99999999999999999988765 79999999999999999999 999999999888877665 46788887666 599
Q ss_pred EEEecCCceecccccc-ccceeeeeecCCCEEEEEEcCCeEEEEEecCCCceeee
Q 003459 252 VFSWEPIRCHDAVDVG-WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYT 305 (818)
Q Consensus 252 Vwd~~~~~~~~~~~~~-~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~~~ 305 (818)
+||.+.+.+..++... ...+..+..- ...+++++.||.+.+||+..+....-.
T Consensus 437 ~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGRHVGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EeecccCceeeeeccCCcccEEEeecC-cceEEEEecCCeeEEEecccCchhhhh
Confidence 9999999999988774 3444433322 488999999999999999999876633
No 49
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.3e-27 Score=267.91 Aligned_cols=249 Identities=21% Similarity=0.426 Sum_probs=210.8
Q ss_pred ceeEEEEe-cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC------------------------------------
Q 003459 6 AYKLQEFV-AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK------------------------------------ 48 (818)
Q Consensus 6 ~~kl~~~~-~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~------------------------------------ 48 (818)
.+..|++. +|.+.|+++.|++ +|+|||+||.||.|+||.+-.
T Consensus 256 l~~~Qe~~~ah~gaIw~mKFS~-DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 256 LTVVQEISNAHKGAIWAMKFSH-DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eEEeeccccccCCcEEEEEeCC-CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 35667888 9999999999999 788999999999999997633
Q ss_pred ------------------------CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCe
Q 003459 49 ------------------------PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNC 104 (818)
Q Consensus 49 ------------------------~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V 104 (818)
.++++.+.||.+.|..|.|+.++ +|++++.|.+|++|++...++++.|. |...|
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfV 412 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFV 412 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCee
Confidence 02334567899999999999765 77899999999999999999999998 99999
Q ss_pred EEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q 003459 105 ISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183 (818)
Q Consensus 105 ~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~ 183 (818)
+||+|+| |.+||++|+.||.|+||++...+.+.-...+ .-|++++|.|||++.++|+.+|.+++|+....+....+..
T Consensus 413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 9999999 5679999999999999999988777665544 7799999999999999999999999999998877666542
Q ss_pred --C------CCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCC--eeEEEEeCCCCEEEEEECC-CEE
Q 003459 184 --H------EGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPETSG--VRCLTFNPDGRTLLCGLHE-SLK 251 (818)
Q Consensus 184 --h------~~~I~sv~fspdg-~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~--I~sl~fspdg~~Lasgs~d-~I~ 251 (818)
| ...|+++.|.|.. ..|++.+.|..|+|||.+..+++..++++... -....|+.||++|+++++| .+.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY 571 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY 571 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence 1 2379999999853 35777778999999999988888888766332 3566799999999999988 488
Q ss_pred EEEecCC
Q 003459 252 VFSWEPI 258 (818)
Q Consensus 252 Vwd~~~~ 258 (818)
||+.+..
T Consensus 572 iW~~~~~ 578 (712)
T KOG0283|consen 572 IWKNDSF 578 (712)
T ss_pred EEeCCCC
Confidence 8887654
No 50
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.7e-26 Score=257.91 Aligned_cols=284 Identities=24% Similarity=0.368 Sum_probs=253.5
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
.++.+|...|.+++++. +..++++| ..+.+++|+..+.+++.++.. +.+.+..|-|.++++++|...|.+.+||+.
T Consensus 367 i~~~GHR~dVRsl~vS~-d~~~~~Sg-a~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSS-DSILLASG-AGESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeeccchhheeEEEeec-Cceeeeec-CCCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEee
Confidence 46789999999999997 44445554 467899999999999999974 489999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-----CeE--E------EEEecCCCCeEEEEEcCCCC
Q 003459 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-----KGC--I------HTYKGHTRGVNAIRFTPDGR 156 (818)
Q Consensus 90 t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-----~~~--i------~~l~~h~~~V~~l~fspdg~ 156 (818)
+...+.++..|.+.|++++.+||+..+++|+.|.+|++||..- +.. + .++. -...|.|+.+||||+
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGK 521 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCc
Confidence 9999999999999999999999999999999999999999641 111 1 1122 346799999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003459 157 WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (818)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fs 236 (818)
+|+++--|.+++||-+.+-+....+-+|.-+|.||..+||+.++++|+.|..|++|-++-|.+-..+.+|...|.++.|-
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecC
Q 003459 237 PDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
|+...+++++.+ .++-||-+...+.+.+..+...+.++.. ++|.++++++.|..|++|.-.-
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 988877776655 5999999999999999999988888875 8999999999999999997543
No 51
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=2.1e-26 Score=240.00 Aligned_cols=245 Identities=20% Similarity=0.364 Sum_probs=215.5
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
.+.++.+|.+.|+|+.|+. ++.+||||+-+|.|.||...++.....+...-..|.-+.|+|.+..|++|+.||.+.+|.
T Consensus 98 ~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ 176 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQ 176 (399)
T ss_pred ceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEE
Confidence 5668899999999999999 778999999999999999999999988887778899999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec--------------------------
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-------------------------- 141 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~-------------------------- 141 (818)
+.++...+.+.+|..++++-.|.|+|+.++++..||+|++||+.++.++.++..
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~ 256 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGV 256 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCcc
Confidence 999889999999999999999999999999999999999999999887776541
Q ss_pred -------------------------CCCCeEEEE---EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEE
Q 003459 142 -------------------------HTRGVNAIR---FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDF 193 (818)
Q Consensus 142 -------------------------h~~~V~~l~---fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~f 193 (818)
+...+.++. |+..=.+.|+|+-||+|.|||+...+..+.+. |...|+.+.|
T Consensus 257 ~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w 335 (399)
T KOG0296|consen 257 ACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKW 335 (399)
T ss_pred EEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEE
Confidence 001111222 22233567889999999999999887777666 8889999999
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003459 194 HPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 194 spdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
.+ ..+|++++.+|.|+.||.++|+++..+.+|..+|.+++++|+++++++++++ ..+||+.
T Consensus 336 ~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 336 LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 99 7799999999999999999999999999999999999999999999998877 4788765
No 52
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=8.3e-26 Score=276.96 Aligned_cols=239 Identities=23% Similarity=0.380 Sum_probs=209.9
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~~~ 93 (818)
+...|.+++|++..+.+|++++.||+|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||+.++..
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 3467999999987788999999999999999999999999999999999999996 789999999999999999999998
Q ss_pred EEEEcCCCCCeEEEEEe-CCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 94 VRTLTGHRSNCISVDFH-PFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 94 v~~l~~h~~~V~sv~fs-pdg~~Lasgs~Dg~I~IwDl~~~~-~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
+..+..+ ..+.++.|+ +++.+|++|+.||.|++||++..+ .+..+.+|...|.++.|. ++.+|++++.|+.|++||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 8888754 679999995 568999999999999999998765 567788999999999997 788999999999999999
Q ss_pred CCC------CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-------------CCCCCCeeE
Q 003459 172 LTA------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-------------GPETSGVRC 232 (818)
Q Consensus 172 l~t------~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~-------------~~~~~~I~s 232 (818)
++. .+.+..+.+|...+.++.|+|++.+|++|+.|+.|++|+......+..+ ..+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 974 3577889999999999999999999999999999999998765443221 223456999
Q ss_pred EEEeCCCCEEEEEECC-CEEEEEe
Q 003459 233 LTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
++|++++.+|++|+.+ .|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999999988765 5999985
No 53
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=2.3e-26 Score=240.62 Aligned_cols=277 Identities=26% Similarity=0.439 Sum_probs=239.9
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS---SEVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fsp---dg~~Lasgs~DG~I~IWDl~t 90 (818)
-|.+.|.++... +..+++|++||.+++||. .|++.+.+.||.++|..++|.- ....|++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc---CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 588888888876 458999999999999996 6999999999999999999843 334699999999999999987
Q ss_pred CeEE----EEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC-------------------------CCeEEEEEec
Q 003459 91 AKIV----RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-------------------------KKGCIHTYKG 141 (818)
Q Consensus 91 ~~~v----~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~-------------------------~~~~i~~l~~ 141 (818)
+... ..-.||...|.++...++|..|++|+.|..|.||+.. ++.++.++.+
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 6533 3335999999999999999999999999999999932 1235677889
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe---
Q 003459 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE--- 218 (818)
Q Consensus 142 h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~--- 218 (818)
|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+.+ ...++|+.++|...+|++|+.|..|++||.+++.
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 999999999997 66899999999999999999999988874 6789999999999999999999999999998753
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEE-EEECC-CEEEEEecCCc-eeccccccccceeeeeecCCCEEEEEEcCCeEEEEE
Q 003459 219 LIGSAGPETSGVRCLTFNPDGRTLL-CGLHE-SLKVFSWEPIR-CHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 219 ~i~~~~~~~~~I~sl~fspdg~~La-sgs~d-~I~Vwd~~~~~-~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWd 295 (818)
...++.+|.+.|.++.|+|...+++ +|+.| .+++||....+ .+..+..++..+.++.+.++.++++|+.|++|+|+.
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFK 416 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEec
Confidence 4566889999999999999876655 55555 69999999877 677788889999999999999999999999999985
Q ss_pred e
Q 003459 296 V 296 (818)
Q Consensus 296 v 296 (818)
-
T Consensus 417 ~ 417 (423)
T KOG0313|consen 417 G 417 (423)
T ss_pred c
Confidence 3
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=236.68 Aligned_cols=262 Identities=24% Similarity=0.385 Sum_probs=226.4
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEE
Q 003459 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL-EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129 (818)
Q Consensus 51 ~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl-~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwD 129 (818)
.+..+.+|.+.|..+.|+|+|.+|++|+.|..|.+|++ ..-+....+++|.+.|..+.|.+++..+++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 45567899999999999999999999999999999995 44566778889999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCe
Q 003459 130 IRKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT 208 (818)
Q Consensus 130 l~~~~~i~~l~~h~~~V~~l~fspdg~-~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~ 208 (818)
.+++++++.+++|...|+.+.-+.-|. ++.+++.||++++||+++...++++. ...+++++.|...+..+.+|+-|+.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence 999999999999999999988544444 56678899999999999999998886 3678999999999999999999999
Q ss_pred EEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-CCCEEEEEecCC----ceecccccc-----ccceeeeeecC
Q 003459 209 VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HESLKVFSWEPI----RCHDAVDVG-----WSRLSDLNVHE 278 (818)
Q Consensus 209 I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~~----~~~~~~~~~-----~~~v~~l~~~~ 278 (818)
|++||++.......+.+|..+|+.+..+++|.++.+-+ +..+++||+.+. +|..++..+ -..+.+...++
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999999999999999999999999999999765 457999999864 444444222 23345555689
Q ss_pred CCEEEEEEcCCeEEEEEecCCCceeeeecccceec
Q 003459 279 GKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVN 313 (818)
Q Consensus 279 g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~~~~~~ 313 (818)
+..+..|+.|..+++||....++.-+.-|+...+|
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn 312 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVN 312 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEE
Confidence 99999999999999999999888776666665544
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=227.28 Aligned_cols=248 Identities=19% Similarity=0.308 Sum_probs=219.3
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEEC
Q 003459 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (818)
Q Consensus 51 ~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 130 (818)
....+.++.++|.++.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCe
Q 003459 131 RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG--KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT 208 (818)
Q Consensus 131 ~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~ 208 (818)
.+|+.++.+.+|.+.|+.++|+.+...+++|+.|..+++||.++. ++++.+......|.++... +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 999999999999999999999999999999999999999999864 6788887777889888875 558999999999
Q ss_pred EEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeee---ecCCCEEEE
Q 003459 209 VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN---VHEGKLLGC 284 (818)
Q Consensus 209 I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~---~~~g~lLat 284 (818)
++.||++.|+....+- ..+|+++.|++||++.++++-+ .+++.|-++++.+..+..+...-.-+. ......+++
T Consensus 167 vRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred EEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe
Confidence 9999999999876554 4689999999999998887666 699999999999888866655433322 244577899
Q ss_pred EEcCCeEEEEEecCCCce
Q 003459 285 SYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 285 g~~Dg~V~IWdvd~~~~~ 302 (818)
|++||.|++||+-...+.
T Consensus 245 gSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDETQI 262 (307)
T ss_pred ccCCceEEEEEeccceee
Confidence 999999999998766543
No 56
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=2.2e-25 Score=224.54 Aligned_cols=249 Identities=21% Similarity=0.399 Sum_probs=210.7
Q ss_pred ceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCC---CeEEEEE-cCCCCCeEEEEEeCCCCEEEEEECCCc
Q 003459 50 NAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEE---AKIVRTL-TGHRSNCISVDFHPFGEFFASGSLDTN 124 (818)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~t---~~~v~~l-~~h~~~V~sv~fspdg~~Lasgs~Dg~ 124 (818)
..++.+.+|.+.+..++|+|. |..||+++.|..|++|+... ..+...+ .+|+..|.+++|+|.|++|++|+.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 345678899999999999998 89999999999999999885 3344444 369999999999999999999999999
Q ss_pred EEEEECCC--CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCEEEEEEeCCCCE
Q 003459 125 LKIWDIRK--KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDFHPHEFL 199 (818)
Q Consensus 125 I~IwDl~~--~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~I~sv~fspdg~~ 199 (818)
+.||.-.. .+++.++.+|...|.|++|+++|++||+++.|..|-||.+..+ .++..++.|...|..+.|||...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 99997653 4689999999999999999999999999999999999998854 467788899999999999999999
Q ss_pred EEEEeCCCeEEEEECC---CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeee
Q 003459 200 LATGSADRTVKFWDLE---TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN 275 (818)
Q Consensus 200 Lasgs~Dg~I~IwDl~---t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~ 275 (818)
|++++.|.+|++|+-. ...++.++.+|...|.+++|++.|..|++++++ .++||-.-.. .-..+...++++.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~----~~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD----LSGMHSRALYDVP 240 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC----cchhcccceEeee
Confidence 9999999999999866 467899999999999999999999999999888 5999974421 1122223344455
Q ss_pred ecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 276 VHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 276 ~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
+. +..|++++.|+.|++|.-..+-..|
T Consensus 241 W~-~~~IaS~ggD~~i~lf~~s~~~d~p 267 (312)
T KOG0645|consen 241 WD-NGVIASGGGDDAIRLFKESDSPDEP 267 (312)
T ss_pred ec-ccceEeccCCCEEEEEEecCCCCCc
Confidence 44 6889999999999999877544444
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=2.9e-28 Score=251.24 Aligned_cols=240 Identities=26% Similarity=0.545 Sum_probs=210.1
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
..+..+.||++.|.|+.|. .+++++|+.|.+|++||+++++++.++-+|...|..+.|+ +.++++++.|.+|.+|
T Consensus 228 ~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVW 302 (499)
T KOG0281|consen 228 ECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVW 302 (499)
T ss_pred HHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEE
Confidence 3456788999999999995 4699999999999999999999999999999999999996 4589999999999999
Q ss_pred ECCCCe---EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003459 87 DLEEAK---IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 87 Dl~t~~---~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~ 163 (818)
|+.... +.+.+.||...|..+.|+ .+++++++.|.+|++|++.+++++.++.+|...|-|+.+. |+++++|+.
T Consensus 303 dm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSS 378 (499)
T KOG0281|consen 303 DMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS 378 (499)
T ss_pred eccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCC
Confidence 998654 334567999999999997 5799999999999999999999999999999999999885 899999999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe---------EEEEeCCCCCCeeEEE
Q 003459 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE---------LIGSAGPETSGVRCLT 234 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~---------~i~~~~~~~~~I~sl~ 234 (818)
|.+|++||+..|.++..+.+|+.-|.|+.|. .+.+++|..||+|++||+..+. ++.....|.+.|..+.
T Consensus 379 DntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQ 456 (499)
T KOG0281|consen 379 DNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQ 456 (499)
T ss_pred CceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEe
Confidence 9999999999999999999999999999995 5689999999999999998754 2333456788899999
Q ss_pred EeCCCCEEE-EEECCCEEEEEecCCc
Q 003459 235 FNPDGRTLL-CGLHESLKVFSWEPIR 259 (818)
Q Consensus 235 fspdg~~La-sgs~d~I~Vwd~~~~~ 259 (818)
|. ...++ +..++.|-|||+..+-
T Consensus 457 FD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 457 FD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred ec--ceEEEeccCCCeEEEEEcCCCC
Confidence 96 34455 4455689999997653
No 58
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=2.8e-26 Score=243.11 Aligned_cols=278 Identities=23% Similarity=0.380 Sum_probs=241.1
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (818)
..|.++...|. ...+.||+.|..+.++|...++.+..++||.-.|+.+.|+++...+++++.|-.|+||..........
T Consensus 220 pgi~ald~~~s-~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 220 PGITALDIIPS-SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCeeEEeecCC-CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 46888888884 67899999999999999999999999999999999999999999999999999999999988888888
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h--~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t 174 (818)
...|..+|+.+..+|.|+||++++.||+..+.|++++.++...... .-.+++.+|+|||..|.+|..||.|+|||+..
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 8899999999999999999999999999999999999988776642 24589999999999999999999999999999
Q ss_pred CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECCCEEEE
Q 003459 175 GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHESLKVF 253 (818)
Q Consensus 175 ~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~-~~~I~sl~fspdg~~Lasgs~d~I~Vw 253 (818)
+..+..|.+|.++|..++|+.+|.||++++.|+.|++||++..+...++... ..++.++.|...|.+|+.+ ...++||
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEE
Confidence 9999999999999999999999999999999999999999988776666433 3479999999999999998 4557777
Q ss_pred Eec----CCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEe
Q 003459 254 SWE----PIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 254 d~~----~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdv 296 (818)
-+. ..++...+..+......+.+ ...+++++++.|..++++.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 776 33444444444444444443 56688999999988887754
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.7e-26 Score=229.14 Aligned_cols=278 Identities=21% Similarity=0.387 Sum_probs=227.6
Q ss_pred EEEEEEeeCCCcEEEEE-------eCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEC
Q 003459 19 VNCLKIGRKSSRVLVTG-------GEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 19 V~~lafsp~~~~lLatg-------s~Dg~V~lWdl~~~~~i~~l~--~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl 88 (818)
=.++.|+|--...|+.+ ...|++.|.++..++-+..+. .-.+.+..++|+++ .+.+++++.||++++||+
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 35788999555555544 346899999996555554443 34678999999985 567888899999999996
Q ss_pred CC-CeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCC
Q 003459 89 EE-AKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDN 165 (818)
Q Consensus 89 ~t-~~~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~Dg 165 (818)
.. .+++..++.|..+|.++.|++.. ..+++++.|++|++||...+..+.++.+|...|...+|+| .++.+++++.||
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~ 170 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDG 170 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCc
Confidence 43 46888999999999999999854 4688889999999999999999999999999999999999 688999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCC-CEE
Q 003459 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDG-RTL 242 (818)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sv~fsp-dg~~Lasgs~Dg~I~IwDl~t~~-~i~~~~~~~~~I~sl~fspdg-~~L 242 (818)
++++||++..-....+..|...|.|+.|+. +..+|++|+.|+.|++||+++.+ ++..+.+|.-.|+.+.|||.. ..|
T Consensus 171 ~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL 250 (311)
T KOG0277|consen 171 TLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL 250 (311)
T ss_pred eEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh
Confidence 999999987544444888999999999997 57899999999999999999854 678889999999999999974 566
Q ss_pred EEEECC-CEEEEEecC-Cceeccccccccceeeee--ecCCCEEEEEEcCCeEEEEEe
Q 003459 243 LCGLHE-SLKVFSWEP-IRCHDAVDVGWSRLSDLN--VHEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 243 asgs~d-~I~Vwd~~~-~~~~~~~~~~~~~v~~l~--~~~g~lLatg~~Dg~V~IWdv 296 (818)
++++.| +.+||+... ..+...++.+..-+..+. ..++.++|.++-|..++||+.
T Consensus 251 aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 251 ASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 777777 799999984 445555555554444333 357899999999999999985
No 60
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.2e-25 Score=254.71 Aligned_cols=228 Identities=20% Similarity=0.323 Sum_probs=192.5
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCe
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGT 82 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~-------~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~ 82 (818)
.+.+|.+.|++++|+|.++.+|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ .+|++|+.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 478999999999999966778999999999999999654 3567889999999999999975 69999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEE
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG-VNAIRFTPDGRWVVSG 161 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~-V~~l~fspdg~~L~sg 161 (818)
|+|||+.+++.+..+.+|...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..++++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEE
Confidence 999999999999999999999999999999999999999999999999999999999988765 4567899988888776
Q ss_pred E----CCCeEEEEECCCCe-EEEEEecC-CCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEeCC-CCCCeeEE
Q 003459 162 G----EDNTVKLWDLTAGK-LLHDFKCH-EGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGP-ETSGVRCL 233 (818)
Q Consensus 162 s----~Dg~I~IwDl~t~~-~i~~~~~h-~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t~~~i~~~~~-~~~~I~sl 233 (818)
+ .|+.|++||+++.. .+.....+ ...+....|++++.+|++++ .|+.|++||+.+++.+..... ...++..+
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~ 309 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGL 309 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcce
Confidence 5 47899999998754 34333323 34566678899999998887 599999999999887765433 34456777
Q ss_pred EEeCC
Q 003459 234 TFNPD 238 (818)
Q Consensus 234 ~fspd 238 (818)
+|.|.
T Consensus 310 ~~~pk 314 (493)
T PTZ00421 310 CMMPK 314 (493)
T ss_pred Eeccc
Confidence 77774
No 61
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.5e-25 Score=224.64 Aligned_cols=275 Identities=22% Similarity=0.358 Sum_probs=235.0
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE--EecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL--SLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLW 86 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~--~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IW 86 (818)
+++++|...|.+|+|+. ++..|++|+.|+++.+|+++...... ...+|.+.|..++|+| ...+|++++.|.+|++|
T Consensus 14 r~~~~~~~~v~Sv~wn~-~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNC-DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred HHhhhhhhcceEEEEcc-cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 67789999999999998 67789999999999999997665444 3458999999999987 45689999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
|+..+++...+......+ -+.|+|+|.++++++.|..|.+.|.++.+.....+ ....+.-++|+-++++++.....|.
T Consensus 93 d~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred EeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCce
Confidence 999999999888555555 57899999999999999999999999988777665 4556888999988888887777899
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
|.|.....-+++..++.|.....||.|+|+|+++|+|+.|-.+.+||++..-++..+..+.-+|+.+.|+.||++||+|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-EEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcC
Q 003459 247 HES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQ 288 (818)
Q Consensus 247 ~d~-I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~D 288 (818)
+|. |-|-+.+++.....+....... .+.+ +...+||-+.+|
T Consensus 251 EDh~IDIA~vetGd~~~eI~~~~~t~-tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVWEIPCEGPTF-TVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccceEEeEecccCCeEEEeeccCCce-eEEecCCCceeeEEecC
Confidence 984 7777788776655554444333 3444 555677766554
No 62
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.4e-26 Score=259.66 Aligned_cols=248 Identities=21% Similarity=0.408 Sum_probs=206.2
Q ss_pred EEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------------------------------C--------
Q 003459 53 LSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE--------------------------------A-------- 91 (818)
Q Consensus 53 ~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t--------------------------------~-------- 91 (818)
+.+. .|.+.|+++.|++||+|||+||.||.|+||.+.. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 7999999999999999999999999999998654 0
Q ss_pred --------------------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEE
Q 003459 92 --------------------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRF 151 (818)
Q Consensus 92 --------------------~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~f 151 (818)
++++.+.||.+.|.++.|+. .++|++++.|.+|++|++....|+..|. |...|+|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 12334678999999999996 5599999999999999999999999997 9999999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC----
Q 003459 152 TP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE---- 226 (818)
Q Consensus 152 sp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~---- 226 (818)
+| |.++|++|+-||.|+||++...+.+.-... ..-|++++|.|+|.+.++|+.+|.+++|++...+......-+
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 99 889999999999999999998877766654 478999999999999999999999999999988776553211
Q ss_pred ----CCCeeEEEEeCCCC--EEEEEECCCEEEEEecCCceeccc---cccccceeeeeecCCCEEEEEEcCCeEEEEEec
Q 003459 227 ----TSGVRCLTFNPDGR--TLLCGLHESLKVFSWEPIRCHDAV---DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 227 ----~~~I~sl~fspdg~--~Lasgs~d~I~Vwd~~~~~~~~~~---~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd 297 (818)
...|+++.|.|... .|++..|..|+|||.........+ ....+.+..-+..+|++|+++++|..|+||+.+
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 23699999997543 666776668999999665554433 333445555556799999999999999999988
Q ss_pred CCCcee
Q 003459 298 ISRIEP 303 (818)
Q Consensus 298 ~~~~~~ 303 (818)
......
T Consensus 577 ~~~~~~ 582 (712)
T KOG0283|consen 577 SFNSEA 582 (712)
T ss_pred CCcccc
Confidence 776544
No 63
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.1e-24 Score=250.36 Aligned_cols=247 Identities=19% Similarity=0.309 Sum_probs=198.5
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE-------------EEecCCCCCeEEEEEcC-CCCEEEEEECCC
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-------------LSLSGHTSGIDSVSFDS-SEVLVAAGAASG 81 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i-------------~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG 81 (818)
-..|.....++++.. +++++.+.....|+...+..+ ..+.+|.+.|.+++|+| ++.+|++|+.||
T Consensus 20 ~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 20 FLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eeccccccccCCCCC-cEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 345666666664343 566666666677765333222 24678999999999999 889999999999
Q ss_pred eEEEEECCCC-------eEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003459 82 TIKLWDLEEA-------KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (818)
Q Consensus 82 ~I~IWDl~t~-------~~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp 153 (818)
+|++||+.++ ..+..+.+|...|.+++|+|++ .+|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~sp 178 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNL 178 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEEC
Confidence 9999999765 3567889999999999999986 6899999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC-EEEEEEeCCCCEEEEEe----CCCeEEEEECCCCe-EEEEeCCC-
Q 003459 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPHEFLLATGS----ADRTVKFWDLETFE-LIGSAGPE- 226 (818)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~-I~sv~fspdg~~Lasgs----~Dg~I~IwDl~t~~-~i~~~~~~- 226 (818)
+|.+|++++.|+.|++||+++++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++.. .+.....+
T Consensus 179 dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~ 258 (493)
T PTZ00421 179 DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ 258 (493)
T ss_pred CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC
Confidence 9999999999999999999999999999888765 45678999877777654 47899999998754 33333322
Q ss_pred CCCeeEEEEeCCCCEEEEEE--CCCEEEEEecCCceecc
Q 003459 227 TSGVRCLTFNPDGRTLLCGL--HESLKVFSWEPIRCHDA 263 (818)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs--~d~I~Vwd~~~~~~~~~ 263 (818)
...+....|++++.+|++++ ++.|++|++..++....
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 34556677999999998775 45699999987765443
No 64
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.4e-25 Score=250.05 Aligned_cols=272 Identities=26% Similarity=0.414 Sum_probs=239.2
Q ss_pred EEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC-C
Q 003459 22 LKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG-H 100 (818)
Q Consensus 22 lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~-h 100 (818)
+.|+. .+.|++|.. ..|++|+..++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.+ |
T Consensus 183 ldWss--~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWSS--ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred hhccc--CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 56763 445666653 5799999988886666665689999999999999999999999999999999999999998 9
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 101 RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH 179 (818)
Q Consensus 101 ~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~-l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~ 179 (818)
...|.+++|. +..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+++|++|+.|+.+.|||.....+..
T Consensus 260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~ 337 (484)
T KOG0305|consen 260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF 337 (484)
T ss_pred CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE
Confidence 9999999998 67899999999999999998776655 88999999999999999999999999999999998888999
Q ss_pred EEecCCCCEEEEEEeCC-CCEEEEEe--CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE---CCCEEEE
Q 003459 180 DFKCHEGQIQCIDFHPH-EFLLATGS--ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL---HESLKVF 253 (818)
Q Consensus 180 ~~~~h~~~I~sv~fspd-g~~Lasgs--~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs---~d~I~Vw 253 (818)
.+..|.+.|.+++|+|- ..+||+|+ .|+.|++||+.+++.+..+.. ...|.+|.|++..+-|+++. .+.|.||
T Consensus 338 ~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw 416 (484)
T KOG0305|consen 338 TFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLW 416 (484)
T ss_pred EEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEE
Confidence 99999999999999995 67888875 689999999999999987754 47799999999998888653 3469999
Q ss_pred EecCCceeccccccccceeeee-ecCCCEEEEEEcCCeEEEEEecCC
Q 003459 254 SWEPIRCHDAVDVGWSRLSDLN-VHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 254 d~~~~~~~~~~~~~~~~v~~l~-~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
.+.+.+....+..|...+-.+. .++|..+++|+.|.++++|++-..
T Consensus 417 ~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 417 KYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999888888888887776666 489999999999999999988765
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8e-26 Score=243.37 Aligned_cols=277 Identities=25% Similarity=0.358 Sum_probs=238.9
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV 94 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v 94 (818)
-.+.|.+++|+|....-+|+.+. -.+.||+..+......+......|.++.|-.||++|++|+..|.|+|||+.+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 34579999999976655666554 46999998888888878888899999999999999999999999999998777788
Q ss_pred EEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEEC
Q 003459 95 RTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDL 172 (818)
Q Consensus 95 ~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl 172 (818)
+.+.+|..++..+.|+|+++ .|++|+.|+.+++||+.+......+.+|.+.|.|.+|+| ++..+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 89999999999999999776 678888899999999999887778899999999999999 4668999999999999999
Q ss_pred CCC-eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-C
Q 003459 173 TAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-S 249 (818)
Q Consensus 173 ~t~-~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t-~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~ 249 (818)
+.. ..+.++. |..+|..+.+-|.|..+++++. ..|++||+-+ ++.+.....|.-.|+|+.+..++..|++|+-| .
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~ 261 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRH 261 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccc
Confidence 987 6777776 8999999999999999999874 5899999985 55566666699999999999999999987655 6
Q ss_pred EEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEE
Q 003459 250 LKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 250 I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IW 294 (818)
++||+....+....+......+....+++++.++.|..+|.+.+=
T Consensus 262 VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 262 VKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred eEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 999998888887777777777777777899999999999877543
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=256.14 Aligned_cols=250 Identities=27% Similarity=0.489 Sum_probs=224.4
Q ss_pred ceeEEE-EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 6 AYKLQE-FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 6 ~~kl~~-~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
.+.+.. +.+|.+.|++++|.. ++.+|++|+.|.++++||..++++...+.+|.+.|.++... ..++++|+.|.+|+
T Consensus 238 ~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 238 GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVK 314 (537)
T ss_pred ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEE
Confidence 445555 999999999999987 78899999999999999999999999999999999999874 45788899999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003459 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D 164 (818)
+|+++++..+..+.+|...|.++..+ +.++++|+.||+|++||+.+++++..+.+|...|.++.+.+. ..+++|+.|
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence 99999999999999999999999998 889999999999999999999999999999999999988754 899999999
Q ss_pred CeEEEEECCCC-eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC-CCCCeeEEEEeCCCCEE
Q 003459 165 NTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-ETSGVRCLTFNPDGRTL 242 (818)
Q Consensus 165 g~I~IwDl~t~-~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~-~~~~I~sl~fspdg~~L 242 (818)
+.|++||+++. +++..+.+|..-+..+.+ .+.+|++++.|++|++||..+++++..+.. |...|..+++. +...|
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~~~il 468 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG-KEEIL 468 (537)
T ss_pred cceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC-cceEE
Confidence 99999999999 999999999988866654 567999999999999999999999999988 67888888887 44455
Q ss_pred EEEECCCEEEEEecCCceeccc
Q 003459 243 LCGLHESLKVFSWEPIRCHDAV 264 (818)
Q Consensus 243 asgs~d~I~Vwd~~~~~~~~~~ 264 (818)
.++.++.+++||+.++.+...+
T Consensus 469 ~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 469 CSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEecCCeeEEEecccCchhhhh
Confidence 5556667999999998876544
No 67
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=4.3e-25 Score=257.04 Aligned_cols=291 Identities=19% Similarity=0.352 Sum_probs=246.0
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEe--CCCeEEEEECCC------------CceEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGK------------PNAILSLSGHTSGIDSVSFDSSEVLVAAG 77 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs--~Dg~V~lWdl~~------------~~~i~~l~~h~~~V~~l~fspdg~~Lasg 77 (818)
+..++..|.+++.+| ++..++||+ .||.+.||+.+. .+.+.+...|.+.|.|+.|++||.+||+|
T Consensus 9 v~H~~~~IfSIdv~p-dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHP-DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred cccCCeeEEEEEecC-CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeec
Confidence 344455799999999 667799999 899999998631 34566777899999999999999999999
Q ss_pred ECCCeEEEEECCC------------------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 003459 78 AASGTIKLWDLEE------------------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139 (818)
Q Consensus 78 s~DG~I~IWDl~t------------------~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l 139 (818)
+.|+.|.||+... .+.+..+.+|...|..++|+|++.+|++++.|++|.||+..+.+.+.++
T Consensus 88 SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 88 SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee
Confidence 9999999998762 2467788999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC------CCCEEEEEEeCCCCEEEEEeC----CCeE
Q 003459 140 KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH------EGQIQCIDFHPHEFLLATGSA----DRTV 209 (818)
Q Consensus 140 ~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h------~~~I~sv~fspdg~~Lasgs~----Dg~I 209 (818)
++|.+.|..+.|.|-|+||++-+.|++|+||++.+....+.+..+ ...+..+.|+|||.+|++... -.++
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 999999999999999999999999999999998887676666543 234788999999999998752 3479
Q ss_pred EEEECCCCeEEEEeCCCCCCeeEEEEeCC-----CC------------EEEEEECC-CEEEEEecCCceeccc-cccccc
Q 003459 210 KFWDLETFELIGSAGPETSGVRCLTFNPD-----GR------------TLLCGLHE-SLKVFSWEPIRCHDAV-DVGWSR 270 (818)
Q Consensus 210 ~IwDl~t~~~i~~~~~~~~~I~sl~fspd-----g~------------~Lasgs~d-~I~Vwd~~~~~~~~~~-~~~~~~ 270 (818)
.|.+-.+++.-..+-+|..++.++.|+|. .. .+|+|+.| +|.||.....+.+.+. +.-...
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 99999999988889999999999999982 11 56677766 6999998777765443 333445
Q ss_pred eeeeee-cCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 271 LSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 271 v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
+.++.+ ++|..|.+++.||+|.+..++.+++..
T Consensus 328 I~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~ 361 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLFACSLDGTVALIHFEEKELGV 361 (942)
T ss_pred eeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCc
Confidence 667765 799999999999999999999887665
No 68
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.1e-24 Score=218.48 Aligned_cols=291 Identities=19% Similarity=0.309 Sum_probs=240.7
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC--CCeEEEE
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA--SGTIKLW 86 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~--DG~I~IW 86 (818)
.+.|....+.|+++.|+. +|.+|++++.|..++|||..+++.+.++..+...|..++|......++.++. |.+|+..
T Consensus 7 ak~f~~~~~~i~sl~fs~-~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSD-DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccccccCCCceeEEEecC-CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 345666788999999998 6778888999999999999999999999999999999999776666666666 8899999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
++.+.+.++.|.||...|.+++.+|-++.|++++.|++|++||++..+|...+..... ..++|.|.|-++|++.....
T Consensus 86 sl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 86 SLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred EeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCe
Confidence 9999999999999999999999999999999999999999999998888777764444 35789999999999988889
Q ss_pred EEEEECCCC--eEEEEEec---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCC---eeEEEEeCC
Q 003459 167 VKLWDLTAG--KLLHDFKC---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG---VRCLTFNPD 238 (818)
Q Consensus 167 I~IwDl~t~--~~i~~~~~---h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~---I~sl~fspd 238 (818)
|++||++.- .+..+|.. .....+.+.|+|+|++|+.++..+.+++.|.-+|..+..+..+... ..+.+|+||
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPd 243 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPD 243 (311)
T ss_pred EEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCC
Confidence 999999863 34444443 3567899999999999999999999999999999988887665433 267789999
Q ss_pred CCEEEEEECC-CEEEEEecCCceeccccc-cccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 239 GRTLLCGLHE-SLKVFSWEPIRCHDAVDV-GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 239 g~~Lasgs~d-~I~Vwd~~~~~~~~~~~~-~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
++++++|+++ .|.+|+.+++.....+.. ....+.++.+ +-++..-.+.+..+-+|-.+..+..+
T Consensus 244 s~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~f-nP~~~mf~sa~s~l~fw~p~~~~~~~ 309 (311)
T KOG1446|consen 244 SKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRF-NPRYAMFVSASSNLVFWLPDEDALPA 309 (311)
T ss_pred CcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCcccccc-CCceeeeeecCceEEEEeccccccCC
Confidence 9999999886 699999998887766655 3444555553 33444445567789999877666544
No 69
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=2.1e-26 Score=239.50 Aligned_cols=284 Identities=17% Similarity=0.345 Sum_probs=238.8
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
..+.+|.+.|.|++=+|..-..+++|+.||.|+|||+...+++..+..|.+.|.+|++.. ..+++++.|.+|+.|.++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 356899999999999995546799999999999999999999999999999999999987 567788899999999987
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEE
Q 003459 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVK 168 (818)
Q Consensus 90 t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg-~~L~sgs~Dg~I~ 168 (818)
- .++.++.+ ...+..+.-+..+..|++++. .|.|||.+...++..+.-....|.++.|+|-. ..|++++.|+.|.
T Consensus 138 ~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 138 G-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred C-Ccceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 5 46666663 456777777777788888864 58999999989999998878889999999954 4677777999999
Q ss_pred EEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003459 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~-~i~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (818)
+||++++.+++.+.. ...-+.|+|+|.+..+++|++|..++.||++..+ ++.....|.+.|.++.|+|.|+-+++|+.
T Consensus 214 LyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgsy 292 (433)
T KOG0268|consen 214 LYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSY 292 (433)
T ss_pred EEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccc
Confidence 999999998887663 4556889999999999999999999999999754 67778899999999999999999999987
Q ss_pred C-CEEEEEecCCceeccccccc-ccee-eeeecCCCEEEEEEcCCeEEEEEecCCC
Q 003459 248 E-SLKVFSWEPIRCHDAVDVGW-SRLS-DLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 248 d-~I~Vwd~~~~~~~~~~~~~~-~~v~-~l~~~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
| +|+||..+.+...+++.... ..+. .....|.+++++|++|+.|++|...-.+
T Consensus 293 DksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 293 DKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred cceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 7 79999999887766653322 2223 3335899999999999999999765443
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=2.3e-26 Score=242.65 Aligned_cols=280 Identities=27% Similarity=0.423 Sum_probs=246.5
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
..+..|.+.|..+.|-+ +...|++|+.|..|++|+....+ .+.++.|..+.|+.+.|.++++++++++.|+.+++|+
T Consensus 169 ~~ld~h~gev~~v~~l~-~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLR-NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhccccccceeEEcc-CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 35678999999999998 55579999999999999986555 6778888889999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I 167 (818)
+...+...++.+|...|+++.|......+++|+.|.+|++||+....|..++-. ...+..|+.+ +..+++|..|+.|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeecccccce
Confidence 999999999999999999999988777799999999999999999988887753 4456777776 5678999999999
Q ss_pred EEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC----CCCeeEEEEeCCCCEEE
Q 003459 168 KLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE----TSGVRCLTFNPDGRTLL 243 (818)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~----~~~I~sl~fspdg~~La 243 (818)
++||+++..+......+ +.|+++..++++..|.+++.|.++.++|+++.+....+... ....+.+.|||++.|++
T Consensus 325 RfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EEEeccCCceeeEeecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 99999999999988864 59999999999999999999999999999999888776543 33478899999999999
Q ss_pred EEECC-CEEEEEecCCceeccccccccc--eeeeee-cCCCEEEEEEcCCeEEEE
Q 003459 244 CGLHE-SLKVFSWEPIRCHDAVDVGWSR--LSDLNV-HEGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 244 sgs~d-~I~Vwd~~~~~~~~~~~~~~~~--v~~l~~-~~g~lLatg~~Dg~V~IW 294 (818)
+|+.+ .++||+..++++...+....+. +..+.+ +.|..|+.++.++.+.+|
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred eccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99766 6999999999999888776665 666665 789999999999999999
No 71
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.8e-26 Score=226.23 Aligned_cols=240 Identities=25% Similarity=0.425 Sum_probs=208.9
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-CCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-KPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~-~~~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~~ 92 (818)
-.+.+..++|++.....+++++.||.++|||.. ...++..++.|...|.++.|++ ++..+++++.||+|++|+....+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 457899999999888999999999999999974 3467888999999999999988 55677888999999999999999
Q ss_pred EEEEEcCCCCCeEEEEEeCC-CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 003459 93 IVRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLW 170 (818)
Q Consensus 93 ~v~~l~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~Iw 170 (818)
.+.++.+|...|....|+|. .+.|++++.|+++++||++.......+..|...|.|+.|+. +.+.|++|+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 99999999999999999995 56899999999999999987655556889999999999997 67789999999999999
Q ss_pred ECCCC-eEEEEEecCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEeC-CCCEEEEE-
Q 003459 171 DLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNP-DGRTLLCG- 245 (818)
Q Consensus 171 Dl~t~-~~i~~~~~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~-~~i~~~~~~~~~I~sl~fsp-dg~~Lasg- 245 (818)
|++.- .++.++.+|.-.|..+.|+|. ..+|++++.|-+++|||.... ..+.+...|...+..+.|++ ++.+++..
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 99974 468888899999999999997 568999999999999999854 45666778888899999987 45677754
Q ss_pred ECCCEEEEE
Q 003459 246 LHESLKVFS 254 (818)
Q Consensus 246 s~d~I~Vwd 254 (818)
-++.+.||+
T Consensus 299 WDe~l~Vw~ 307 (311)
T KOG0277|consen 299 WDELLYVWN 307 (311)
T ss_pred cccceeeec
Confidence 455688886
No 72
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=3.3e-26 Score=245.85 Aligned_cols=257 Identities=24% Similarity=0.453 Sum_probs=220.6
Q ss_pred ceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEE
Q 003459 50 NAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127 (818)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t-~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~I 127 (818)
+.++.+.+|+..|.++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|..++|+.+|..|++++.|+.|++
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl 284 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL 284 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence 45678899999999999999 899999999999999999976 8999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC
Q 003459 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (818)
Q Consensus 128 wDl~~~~~i~~l~~h~~~V~~l~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D 206 (818)
||+++|+++..+. ....++|+.|+|++ +.+++|+.|+.|+.||+++++.++++..|-+.|..+.|-++|..+++.+.|
T Consensus 285 wDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 285 WDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 9999999999997 45668999999988 899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCce---eccccc---cccceeeeeecC
Q 003459 207 RTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC---HDAVDV---GWSRLSDLNVHE 278 (818)
Q Consensus 207 g~I~IwDl~t~~~i~~~-~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~---~~~~~~---~~~~v~~l~~~~ 278 (818)
+.++||+.+..-.+..+ ..+.....++..+|++.++++-+.+ .|.+|.....-. ...+.. ..-.+..-+.+|
T Consensus 364 ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD 443 (503)
T KOG0282|consen 364 KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD 443 (503)
T ss_pred ccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC
Confidence 99999999987665543 3334556899999999999986655 577877543211 122333 333455556799
Q ss_pred CCEEEEEEcCCeEEEEEecCCCceeeeec
Q 003459 279 GKLLGCSYNQSCVGVWVVDISRIEPYTIG 307 (818)
Q Consensus 279 g~lLatg~~Dg~V~IWdvd~~~~~~~~~~ 307 (818)
|.+|++|..||.+.+||..+.++......
T Consensus 444 G~~l~SGdsdG~v~~wdwkt~kl~~~lka 472 (503)
T KOG0282|consen 444 GRTLCSGDSDGKVNFWDWKTTKLVSKLKA 472 (503)
T ss_pred CCeEEeecCCccEEEeechhhhhhhcccc
Confidence 99999999999999999999886654333
No 73
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.6e-26 Score=257.34 Aligned_cols=353 Identities=28% Similarity=0.449 Sum_probs=292.6
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEE
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISV 107 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv 107 (818)
+..+++.+..+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+..-..+..+.+|..+|.++
T Consensus 3 ~~~~~m~~~~~t~Lr~~~~~------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 3 GMEFLMKTKRATKLRVWDTR------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred cccccceeeeeeccccccch------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 33445555566678888853 344688889999887788999999999999999998877777899999999999
Q ss_pred EEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC
Q 003459 108 DFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ 187 (818)
Q Consensus 108 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~ 187 (818)
.|++...+|++|+.+|+|++||+...+.++++.+|...+..+.|+|.+.+++.|+.|+.+++||++...+.+.+++|...
T Consensus 77 ~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v 156 (825)
T KOG0267|consen 77 TFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV 156 (825)
T ss_pred ecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccc
Q 003459 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV 266 (818)
Q Consensus 188 I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~ 266 (818)
+.++.|+|+|.+++.|++|.+++|||...|+.+..|..|.+.+..+.|+|..-+++.|+.+ .+++||+++.........
T Consensus 157 v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~ 236 (825)
T KOG0267|consen 157 VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP 236 (825)
T ss_pred eEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCC
Confidence 9999999999999999999999999999999999999999999999999999889988766 699999997766655544
Q ss_pred cccceeeeee-cCCCEEEEEEcCCeEE------EEEecCCCceeeeecccceeccccccccCCCCCcccccccccccccC
Q 003459 267 GWSRLSDLNV-HEGKLLGCSYNQSCVG------VWVVDISRIEPYTIGSVTRVNGLSESKSSASGNLSVLNENSAKASLG 339 (818)
Q Consensus 267 ~~~~v~~l~~-~~g~lLatg~~Dg~V~------IWdvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (818)
....+.+..+ ++++.+.+|-....-. -+.....+.+|-..+...+.+.|.+.......+...+++...+..++
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~sl~~~~~a~ah~~~~~~~~Ep~~~~~~vqs~~~~ek~v~v~~d~~~ln~~~s~~~~~ 316 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQISLSESRTASAHVRKTLARWEPEMDGAVVQSNSHKEKVVAVGRDPQDLNAFSSKVNLS 316 (825)
T ss_pred ccCCceeeeecCCceeeecCchhhhhhhhcccceeeccccccccccccceeeecCCcccccccccCcccccccccccccc
Confidence 4555555554 7788888876653221 12223344556666666777778777777777777777888888788
Q ss_pred CCcccCCCccccccccccCccccc-CCCCcccccccccccccccCCCCc
Q 003459 340 KLSVSQNSDPLVKETKSLGRLSVS-QNSDPLLKETKTLGRLSVSQNSEP 387 (818)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 387 (818)
++...+.. .++.+++.+|+++++ |..|+..+++++.+.++..++++.
T Consensus 317 kl~~~~~~-p~l~~t~~l~rl~~S~q~dep~~~~~k~~~~s~t~~~s~~ 364 (825)
T KOG0267|consen 317 KLEDSTYV-PLLKETKSLGRLSVSYQTDEPLDKSTKPHRRSSTSQNSDR 364 (825)
T ss_pred cccccccc-ceeccccchhccccccccCCCcccCCCCcccccccccccc
Confidence 88777777 788888889999887 888888888877666666666544
No 74
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.3e-23 Score=243.00 Aligned_cols=225 Identities=17% Similarity=0.333 Sum_probs=185.5
Q ss_pred EeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCe--------EEEEEcCCCCCeE
Q 003459 35 GGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEAK--------IVRTLTGHRSNCI 105 (818)
Q Consensus 35 gs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~t~~--------~v~~l~~h~~~V~ 105 (818)
|+.++.|.+|+......+..+.+|...|.+++|+|+ +.+|++|+.||+|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999999888888899999999999999996 7899999999999999997642 3456788999999
Q ss_pred EEEEeCCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q 003459 106 SVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184 (818)
Q Consensus 106 sv~fspdg~~-Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h 184 (818)
+++|+|++.. |++++.|+.|++||+++++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999999876 5788999999999999998887776 6678999999999999999999999999999999999999999
Q ss_pred CCCEEE-----EEEeCCCCEEEEEeCCC----eEEEEECCC-CeEEEEeC--CCCCCeeEEEEeCCCCEEEEEECC-CEE
Q 003459 185 EGQIQC-----IDFHPHEFLLATGSADR----TVKFWDLET-FELIGSAG--PETSGVRCLTFNPDGRTLLCGLHE-SLK 251 (818)
Q Consensus 185 ~~~I~s-----v~fspdg~~Lasgs~Dg----~I~IwDl~t-~~~i~~~~--~~~~~I~sl~fspdg~~Lasgs~d-~I~ 251 (818)
.+.+.+ ..|++++.+|++++.|+ +|+|||+++ .+++..+. .+.+.+......++|.++++|..| .|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 876543 23458888999888774 799999995 55555443 223333344445568888888655 699
Q ss_pred EEEecCCce
Q 003459 252 VFSWEPIRC 260 (818)
Q Consensus 252 Vwd~~~~~~ 260 (818)
+|++..+..
T Consensus 289 ~~e~~~~~~ 297 (568)
T PTZ00420 289 YYQHSLGSI 297 (568)
T ss_pred EEEccCCcE
Confidence 999977643
No 75
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=7.9e-24 Score=244.66 Aligned_cols=232 Identities=18% Similarity=0.319 Sum_probs=187.6
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--------eEEEecCCCCCeEEEEEcCCCCE-EEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--------AILSLSGHTSGIDSVSFDSSEVL-VAAG 77 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~--------~i~~l~~h~~~V~~l~fspdg~~-Lasg 77 (818)
..+..+.+|.+.|.+++|+|+++.+|++|+.||+|+|||+.++. .+..+.+|...|.+++|+|++.. |+++
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 35677899999999999999767899999999999999996532 34567899999999999998875 5788
Q ss_pred ECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEE-----EEc
Q 003459 78 AASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI-----RFT 152 (818)
Q Consensus 78 s~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l-----~fs 152 (818)
+.||+|++||+.+++.+..+. |...|.+++|+|+|.+|++++.|+.|+|||+++++.+..+.+|.+.+... .|+
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs 223 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLG 223 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEc
Confidence 999999999999998887776 66789999999999999999999999999999999999999998765432 345
Q ss_pred CCCCEEEEEECCC----eEEEEECCC-CeEEEEEec--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-C
Q 003459 153 PDGRWVVSGGEDN----TVKLWDLTA-GKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-G 224 (818)
Q Consensus 153 pdg~~L~sgs~Dg----~I~IwDl~t-~~~i~~~~~--h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~-~ 224 (818)
+++.+|++++.|+ .|+|||++. ++++..+.. +.+.+......+++.++++|+.|+.|++|++..+.....- .
T Consensus 224 ~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~ 303 (568)
T PTZ00420 224 GDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEY 303 (568)
T ss_pred CCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeeccc
Confidence 8899999988775 799999995 556655542 2333444444556889999999999999999876432211 1
Q ss_pred CCCCCeeEEEEeCCC
Q 003459 225 PETSGVRCLTFNPDG 239 (818)
Q Consensus 225 ~~~~~I~sl~fspdg 239 (818)
.+..++.+++|.|+.
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 245677888998863
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=8.5e-25 Score=243.80 Aligned_cols=239 Identities=24% Similarity=0.458 Sum_probs=216.5
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV 94 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~-h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v 94 (818)
.+.|+++.|++ ++.+|++|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.+|.|..+|+...+..
T Consensus 217 ~~~vtSv~ws~-~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 217 EELVTSVKWSP-DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCceEEEEECC-CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 88999999999 677899999999999999999999999998 99999999998 678999999999999999987655
Q ss_pred EE-EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEE--CCCeEEEE
Q 003459 95 RT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGG--EDNTVKLW 170 (818)
Q Consensus 95 ~~-l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs--~Dg~I~Iw 170 (818)
.. +.+|...|+.+.|++++.+||+|+.|+.+.|||.....++..+..|.+.|.+++|+| ....||+|+ .|+.|++|
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 44 889999999999999999999999999999999988899999999999999999999 566788875 58999999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeCCCCEEEE--EeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003459 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLAT--GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sv~fspdg~~Las--gs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
|..+++.+..+. ..+.|+.+.|++..+-|++ |..++.|.||+..+.+.+..+.+|...|..++++|||..+++|+.|
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 999999998887 4689999999998765555 4457789999999999999999999999999999999999988655
Q ss_pred -CEEEEEecCC
Q 003459 249 -SLKVFSWEPI 258 (818)
Q Consensus 249 -~I~Vwd~~~~ 258 (818)
++++|++-..
T Consensus 453 ETlrfw~~f~~ 463 (484)
T KOG0305|consen 453 ETLRFWNLFDE 463 (484)
T ss_pred CcEEeccccCC
Confidence 7999987553
No 77
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=5.9e-25 Score=224.31 Aligned_cols=288 Identities=18% Similarity=0.358 Sum_probs=232.9
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC------C------------CceEEEecCCCCCeEEEEEc
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG------K------------PNAILSLSGHTSGIDSVSFD 68 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~------~------------~~~i~~l~~h~~~V~~l~fs 68 (818)
+.-..+..|.+++.+.+|++ +|.+++||+.|..|+|.|++ . .-.+.++..|.+.|+++.|+
T Consensus 103 yEt~ylt~HK~~cR~aafs~-DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSP-DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred cceEEEeecccceeeeeeCC-CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 44556788999999999999 67899999999999999985 1 13467888999999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEc--CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCC
Q 003459 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHT 143 (818)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t~~~v~~l~--~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l---~~h~ 143 (818)
|....|++|+.|++|++||+......+.++ ....+|.++.|+|.|.+|++|..-..+++||+.+.+|...- ..|.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccc
Confidence 999999999999999999997643333222 24568999999999999999999999999999998887654 3688
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 003459 144 RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHE-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG 221 (818)
Q Consensus 144 ~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~-~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~ 221 (818)
+.|+++.+++.|+..++|+.||.|++||--+++++.++. .|. ..|++..|..+|+++++.+.|..+++|.+.++.++.
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~ 341 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLK 341 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEE
Confidence 999999999999999999999999999999999998886 354 469999999999999999999999999999999998
Q ss_pred EeCCCCC-----CeeEEEEeCCCCEEEEEECCCEEE--EEecCCceeccccccc-cceeeee-ecCCCEEEEEEcCCeEE
Q 003459 222 SAGPETS-----GVRCLTFNPDGRTLLCGLHESLKV--FSWEPIRCHDAVDVGW-SRLSDLN-VHEGKLLGCSYNQSCVG 292 (818)
Q Consensus 222 ~~~~~~~-----~I~sl~fspdg~~Lasgs~d~I~V--wd~~~~~~~~~~~~~~-~~v~~l~-~~~g~lLatg~~Dg~V~ 292 (818)
.+.+... .-+...|+....|++.-.+.+..+ ||-.+......+..+. ..+..+. .+.+..+.+|+.|-..+
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRAR 421 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceee
Confidence 8765421 124456887788888765554444 4444443333343332 3333333 47789999999999999
Q ss_pred EEE
Q 003459 293 VWV 295 (818)
Q Consensus 293 IWd 295 (818)
+|-
T Consensus 422 FWy 424 (430)
T KOG0640|consen 422 FWY 424 (430)
T ss_pred eee
Confidence 995
No 78
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.2e-25 Score=223.70 Aligned_cols=249 Identities=20% Similarity=0.396 Sum_probs=226.2
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
=|-+|.+|.+.|+...+.. +....++++.|-+-++||.-++..++.+. |..-|..++|+.|.++|++|+.+..++|||
T Consensus 51 wigtfeghkgavw~~~l~~-na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfd 128 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNK-NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFD 128 (334)
T ss_pred cEEeeeccCcceeeeecCc-hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhh
Confidence 3678999999999999987 66678999999999999999999999887 889999999999999999999999999999
Q ss_pred CCCCe-EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 88 LEEAK-IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 88 l~t~~-~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
++..+ +...+.+|.+.|..+.|....+.|++++.|++|++||.+++..++++. ...+|+++.++++|++|.++ ..+.
T Consensus 129 ln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gss 206 (334)
T KOG0278|consen 129 LNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSS 206 (334)
T ss_pred ccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCce
Confidence 98654 566788999999999999988899999999999999999999999987 56789999999999876665 6788
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEE
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~-~~~~~~I~sl~fspdg~~Lasg 245 (818)
|.+||..+-.+++.++ ....|.+..++|+..++++|++|..++.||..+++.+..+ .+|.++|.|+.|+|||...++|
T Consensus 207 V~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsG 285 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASG 285 (334)
T ss_pred eEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeecc
Confidence 9999999999998887 4678999999999999999999999999999999999986 8999999999999999999999
Q ss_pred ECC-CEEEEEecCCcee
Q 003459 246 LHE-SLKVFSWEPIRCH 261 (818)
Q Consensus 246 s~d-~I~Vwd~~~~~~~ 261 (818)
+.| +|++|...+.+..
T Consensus 286 SEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCCceEEEEEecCCCch
Confidence 988 5999998877654
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.5e-25 Score=235.89 Aligned_cols=238 Identities=25% Similarity=0.495 Sum_probs=209.4
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCC
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~t 90 (818)
|.-....|.++.|-. +|++|++|+..|.|+|||..+...+..+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+
T Consensus 64 ~srFk~~v~s~~fR~-DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~ 142 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRS-DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST 142 (487)
T ss_pred HHhhccceeEEEeec-CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC
Confidence 444567899999987 78899999999999999977767788899999999999999955 5778888899999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~ 168 (818)
+.....+.+|.+.|.|.+|+|... .+++|+.||.|++||++.. ..+..+. |..+|..+.|-|.|..+++++ ...|+
T Consensus 143 a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vk 220 (487)
T KOG0310|consen 143 AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVK 220 (487)
T ss_pred cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEE
Confidence 998778999999999999999765 7999999999999999987 5666665 999999999999999998886 66899
Q ss_pred EEECCCC-eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003459 169 LWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 169 IwDl~t~-~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (818)
+||+.+| +.+..+..|...|+|+++..++..|++|+.|+.|++||+.+.+.++.+.- .++|.+++.+||++.++.|..
T Consensus 221 VWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-~~pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 221 VWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-PGPVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred EEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-ccceeeEEecCCCceEEEecc
Confidence 9999965 45555555999999999999999999999999999999999999988864 588999999999999999988
Q ss_pred CCEEEE
Q 003459 248 ESLKVF 253 (818)
Q Consensus 248 d~I~Vw 253 (818)
+++-.+
T Consensus 300 nGlv~~ 305 (487)
T KOG0310|consen 300 NGLVSI 305 (487)
T ss_pred cceeee
Confidence 875433
No 80
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=1.3e-24 Score=242.97 Aligned_cols=247 Identities=24% Similarity=0.455 Sum_probs=224.0
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
..++++.. +-+.|..|.| +++++++|...|.+.+||+.....+.++.+|.+.|+.++.+||+..+++|+.|.+|++|
T Consensus 405 kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfW 481 (888)
T KOG0306|consen 405 KCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFW 481 (888)
T ss_pred ceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEE
Confidence 34444432 3688999999 88999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCC-----CeEE--------EEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003459 87 DLEE-----AKIV--------RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (818)
Q Consensus 87 Dl~t-----~~~v--------~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp 153 (818)
|+.- |... +++. ....|.|+.++|||++|+++-.|.+|++|-+++.+....+-+|.-+|.|+..+|
T Consensus 482 df~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~ 560 (888)
T KOG0306|consen 482 DFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP 560 (888)
T ss_pred eEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC
Confidence 9741 2111 1222 456899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003459 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL 233 (818)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl 233 (818)
|++.+++|+.|..|++|-+.-|.+-+.+-+|...|.++.|.|...++++++.|+.|+-||-.+++.+..+.+|...|+|+
T Consensus 561 DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cL 640 (888)
T KOG0306|consen 561 DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCL 640 (888)
T ss_pred CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEEECC-CEEEEEecC
Q 003459 234 TFNPDGRTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 234 ~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (818)
+.+|+|.++++++.| +|++|.-..
T Consensus 641 av~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 641 AVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEcCCCCeEEeccCCceeEeeeccC
Confidence 999999999999886 799997643
No 81
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=221.64 Aligned_cols=291 Identities=20% Similarity=0.361 Sum_probs=245.2
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
...++|.||.+.|+.++... +..++.+++.|.+-+||.++++.|+..+.||.+.|++|+|++.+.++++++.|++-.||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 34567899999999999876 67799999999999999999999999999999999999999999999999999999999
Q ss_pred EC------CC------------------------------C----eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEE
Q 003459 87 DL------EE------------------------------A----KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK 126 (818)
Q Consensus 87 Dl------~t------------------------------~----~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~ 126 (818)
.. .. + -++..+.+|...|.+..|...|+.+++++.|.+-.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 61 10 0 13455789999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCEEEEEEeCCCCEEEEEeC
Q 003459 127 IWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205 (818)
Q Consensus 127 IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sv~fspdg~~Lasgs~ 205 (818)
+||+++++.+..+.+|....+.++-+|..+++++++.|.+.++||++.. ..+..|++|...|+++.|.-+. .+++|+.
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD 376 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD 376 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence 9999999999999999999999999999999999999999999999954 3567899999999999998764 7889999
Q ss_pred CCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccc----cccccceeeeeecCC
Q 003459 206 DRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV----DVGWSRLSDLNVHEG 279 (818)
Q Consensus 206 Dg~I~IwDl~t~~-~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~----~~~~~~v~~l~~~~g 279 (818)
|.+|++||+++.. ++.++.. ..+++.++.+..+..|+.-.++ .+++||++..+..... ..+..-+.+..+.+.
T Consensus 377 DrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred CceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 9999999999864 4555554 5778999999888888888777 5999999977654332 233334555555332
Q ss_pred ---CEEEEEEcCCeEEEEEecCCC
Q 003459 280 ---KLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 280 ---~lLatg~~Dg~V~IWdvd~~~ 300 (818)
.-|++++-|..+.-|.+.+..
T Consensus 456 hp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 456 HPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred CcccccccccccceeeeeEecccC
Confidence 345677788899999987654
No 82
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.9e-24 Score=233.07 Aligned_cols=284 Identities=21% Similarity=0.323 Sum_probs=211.9
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~----~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
..+.+|+..|.++++.| .|-.|++|+.|-+|++||+..- .....+. .....|.++.|++.|..|++.+.....+
T Consensus 161 i~l~hgtk~Vsal~~Dp-~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDP-SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred EeccCCceEEEEeeecC-CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 35789999999999999 5667999999999999998532 2233333 3456799999999999999999899999
Q ss_pred EEECCCCeEEEE------------EcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCe-EEEEEe-----cCCCC
Q 003459 85 LWDLEEAKIVRT------------LTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKG-CIHTYK-----GHTRG 145 (818)
Q Consensus 85 IWDl~t~~~v~~------------l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~-~i~~l~-----~h~~~ 145 (818)
|+|-.....+.. .+||...++|.+|+|..+ .|++++.||+++|||+...+ ....++ +..-+
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 999654333332 247889999999999875 79999999999999997543 333333 23356
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEecCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe-E
Q 003459 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK---LLHDFKCHEG--QIQCIDFHPHEFLLATGSADRTVKFWDLETFE-L 219 (818)
Q Consensus 146 V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~--~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~-~ 219 (818)
++.++|++||++||+|+.||.|.+||..... .++.-+.|.. .|+||.|+++|++|++-+.|+++++||++..+ +
T Consensus 320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp 399 (641)
T KOG0772|consen 320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP 399 (641)
T ss_pred ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc
Confidence 8899999999999999999999999976432 2223345766 89999999999999999999999999999865 3
Q ss_pred EEEeCCC--CCCeeEEEEeCCCCEEEEEEC-------CCEEEEEecCCceeccccccccceeeeeec-CCCEEEEEEcCC
Q 003459 220 IGSAGPE--TSGVRCLTFNPDGRTLLCGLH-------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVH-EGKLLGCSYNQS 289 (818)
Q Consensus 220 i~~~~~~--~~~I~sl~fspdg~~Lasgs~-------d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~-~g~lLatg~~Dg 289 (818)
+....+. ..+-+.++|||+.++|++|.. +.+.+||--+......+......+....+| .=+.+.+|+.||
T Consensus 400 L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG 479 (641)
T KOG0772|consen 400 LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDG 479 (641)
T ss_pred hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCC
Confidence 4443322 234578999999999998853 125555555544444444443333333344 346677777888
Q ss_pred eEEEE
Q 003459 290 CVGVW 294 (818)
Q Consensus 290 ~V~IW 294 (818)
.++|+
T Consensus 480 ~~~vy 484 (641)
T KOG0772|consen 480 TAHVY 484 (641)
T ss_pred ceEEE
Confidence 88887
No 83
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=4.1e-24 Score=223.81 Aligned_cols=251 Identities=25% Similarity=0.483 Sum_probs=214.8
Q ss_pred cccceeEEEEecCCCCEEEEEEeeCC--CcEEEEEeCCCeEEEEECCCCce----EEEecCCCCCeEEEEEcCCCCEEEE
Q 003459 3 TKRAYKLQEFVAHSSTVNCLKIGRKS--SRVLVTGGEDHKVNLWAIGKPNA----ILSLSGHTSGIDSVSFDSSEVLVAA 76 (818)
Q Consensus 3 t~r~~kl~~~~~H~~~V~~lafsp~~--~~lLatgs~Dg~V~lWdl~~~~~----i~~l~~h~~~V~~l~fspdg~~Las 76 (818)
+.....+..+.+|.++|..++|.-.+ ...|++++.|.++++|.++.+.. +..-.||...|.++...+++..+++
T Consensus 131 d~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~S 210 (423)
T KOG0313|consen 131 DLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCS 210 (423)
T ss_pred ecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEe
Confidence 34556678899999999988886533 23699999999999999876543 2334499999999999999999999
Q ss_pred EECCCeEEEEECC-------------------------CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC
Q 003459 77 GAASGTIKLWDLE-------------------------EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (818)
Q Consensus 77 gs~DG~I~IWDl~-------------------------t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~ 131 (818)
|+.|..|.||+.+ ++.++.++.+|..+|.++.|++ ...+++++.|.+|+.||+.
T Consensus 211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence 9999999999932 1235667889999999999997 7789999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEecCCCCEEEEEEeCC-CCEEEEEeCCC
Q 003459 132 KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK---LLHDFKCHEGQIQCIDFHPH-EFLLATGSADR 207 (818)
Q Consensus 132 ~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~~I~sv~fspd-g~~Lasgs~Dg 207 (818)
+++++.++.+ ...+.|+.++|..++|++|+.|..|++||.+++. ..++|.+|...|.++.|+|. ...|++|+.|+
T Consensus 290 tg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 290 TGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred cccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 9999998885 4569999999999999999999999999999753 56678899999999999995 67889999999
Q ss_pred eEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003459 208 TVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (818)
Q Consensus 208 ~I~IwDl~t~~-~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (818)
++++||+++-+ ++..+..|...|.++.|. ++.+|++|+.| .++|+.-.
T Consensus 369 t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 369 TVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 99999999877 899999999999999998 45678877666 68887643
No 84
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=3.1e-25 Score=227.01 Aligned_cols=254 Identities=21% Similarity=0.413 Sum_probs=215.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE--------cCCCCCeEEEEEeCCCCEEEEEECCCcEEEE
Q 003459 57 GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL--------TGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128 (818)
Q Consensus 57 ~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l--------~~h~~~V~sv~fspdg~~Lasgs~Dg~I~Iw 128 (818)
+..+.+.|..|+|||+||++|+.||.|.+||..+|+..+.+ ..+...|.|++|+.|...+++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 45677899999999999999999999999999999876544 3477899999999999999999999999999
Q ss_pred ECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCC
Q 003459 129 DIRKKGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR 207 (818)
Q Consensus 129 Dl~~~~~i~~l~-~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg 207 (818)
.+++|.|++.|. .|...|+|+.|+.|+..+++++.|.++++.-+.+|+++++|++|.+.|+...|.++|..+++++.||
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 999999999997 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEeCCC--CCCeeEEEEeCCC--CEEEEEECCCEEEEEecCCceecccc----ccccceeeeeecCC
Q 003459 208 TVKFWDLETFELIGSAGPE--TSGVRCLTFNPDG--RTLLCGLHESLKVFSWEPIRCHDAVD----VGWSRLSDLNVHEG 279 (818)
Q Consensus 208 ~I~IwDl~t~~~i~~~~~~--~~~I~sl~fspdg--~~Lasgs~d~I~Vwd~~~~~~~~~~~----~~~~~v~~l~~~~g 279 (818)
+|++|+..+.+++.++++. ..+|.++..-|.. .+++|.-.+++.|.++.. .....+. .+..-+.+...+.|
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCC
Confidence 9999999999999888654 4567888777753 344444445666665542 2222221 22334556667999
Q ss_pred CEEEEEEcCCeEEEEEecCCCceeeeecccce
Q 003459 280 KLLGCSYNQSCVGVWVVDISRIEPYTIGSVTR 311 (818)
Q Consensus 280 ~lLatg~~Dg~V~IWdvd~~~~~~~~~~~~~~ 311 (818)
.++.|.++|+.++.|.+..+.++.+..-+...
T Consensus 450 ewiYcigED~vlYCF~~~sG~LE~tl~VhEkd 481 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD 481 (508)
T ss_pred cEEEEEccCcEEEEEEeecCceeeeeeccccc
Confidence 99999999999999999999998866554443
No 85
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=4.2e-24 Score=237.67 Aligned_cols=285 Identities=24% Similarity=0.400 Sum_probs=242.8
Q ss_pred eeE-EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE--EEecCCCCCeEE-EEEcC-CCCEEEEEECCC
Q 003459 7 YKL-QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI--LSLSGHTSGIDS-VSFDS-SEVLVAAGAASG 81 (818)
Q Consensus 7 ~kl-~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i--~~l~~h~~~V~~-l~fsp-dg~~Lasgs~DG 81 (818)
|+| .++.+|...|..+++.+ +..+++++.||++++|+-...+.+ ..+.+|.+.|.+ ++|.+ ++-.+++|+.|+
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~--~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD--GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDT 81 (745)
T ss_pred ceeEEEeccCccchheeEecC--CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccc
Confidence 444 47899999999999875 347899999999999997544443 346678888877 88875 444689999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003459 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (818)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sg 161 (818)
.|.+|.+....++.++.+|...|+++....++. +++|+.|.++++|-. +++...+.+|...|+++.+-|++ .+++|
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTg 157 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTG 157 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEec
Confidence 999999999999999999999999999887776 999999999999986 56677799999999999999987 79999
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCE
Q 003459 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241 (818)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~ 241 (818)
+.|.+|++|.- ++.+.+|.+|...|..+++-+++ .+++++.||.|++|++ +++.+..+.+|...++++....++..
T Consensus 158 saDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 158 SADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGL 233 (745)
T ss_pred cCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCe
Confidence 99999999985 78999999999999999999876 4667888999999999 78999999999999999996666677
Q ss_pred EEEEECC-CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 242 LLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 242 Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
++++++| .++||+-+ .|.+++......+.+..+-.+.-+++|+.||.||||..+-.+...
T Consensus 234 Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k~R~As 294 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDKDRKAS 294 (745)
T ss_pred EEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecccccCC
Confidence 7766665 69999877 888888888877777777666667889999999999988766543
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-22 Score=199.41 Aligned_cols=289 Identities=19% Similarity=0.330 Sum_probs=227.3
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC---C-----------c-eEEEecCCCCCeEEEEEcCCC
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---P-----------N-AILSLSGHTSGIDSVSFDSSE 71 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~---~-----------~-~i~~l~~h~~~V~~l~fspdg 71 (818)
+...........|.+++|+| .+.+.++|+...+++|..... . . ..+.-+.|.+.|.|.+|+|+|
T Consensus 23 f~~i~~l~dsqairav~fhp-~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHP-AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred eEEEEEecchhheeeEEecC-CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 33334445677899999999 667899999999998875421 0 1 122334689999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeE-----EEEEcCCCCCeEEEEEeCC----CCEEEEEE-CCCcEEEEECCCCeEEEEEec
Q 003459 72 VLVAAGAASGTIKLWDLEEAKI-----VRTLTGHRSNCISVDFHPF----GEFFASGS-LDTNLKIWDIRKKGCIHTYKG 141 (818)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~t~~~-----v~~l~~h~~~V~sv~fspd----g~~Lasgs-~Dg~I~IwDl~~~~~i~~l~~ 141 (818)
.+|++|+.|.+|++.-+....+ -..|..|.+.|..++|..+ +..|++++ .|..|++-|...++..+.+.+
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sg 181 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSG 181 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecC
Confidence 9999999999999987654322 2356779999999999754 34566654 477889999999999999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--C-----CCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 003459 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC--H-----EGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 142 h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--h-----~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
|.+.|.++ ++-+|-.+++|+.|.+|++||++-..++.++.. | .+.|.+++..|.|++|++|..|....+||+
T Consensus 182 htghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 182 HTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI 260 (350)
T ss_pred CcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence 99998876 333588999999999999999998888877642 2 256999999999999999999999999999
Q ss_pred CCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceec----cccccccceeeeeec-CCCEEEEEEcC
Q 003459 215 ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD----AVDVGWSRLSDLNVH-EGKLLGCSYNQ 288 (818)
Q Consensus 215 ~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~----~~~~~~~~v~~l~~~-~g~lLatg~~D 288 (818)
+.+..+..+.+|...|+|+.|+|...||++++.+ .|++-|+...-.+. ++..+-...-...+| ..-.+++.+.|
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssad 340 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSAD 340 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCc
Confidence 9999999999999999999999999999998877 69999987543322 222233333333444 44557788999
Q ss_pred CeEEEEEec
Q 003459 289 SCVGVWVVD 297 (818)
Q Consensus 289 g~V~IWdvd 297 (818)
.++.+|.+.
T Consensus 341 kt~tlwa~~ 349 (350)
T KOG0641|consen 341 KTATLWALN 349 (350)
T ss_pred ceEEEeccC
Confidence 999999764
No 87
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=8.1e-24 Score=226.68 Aligned_cols=251 Identities=27% Similarity=0.493 Sum_probs=212.6
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----------ceEEEecCCCCCeEEEEEcCCC-CEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----------NAILSLSGHTSGIDSVSFDSSE-VLV 74 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~----------~~i~~l~~h~~~V~~l~fspdg-~~L 74 (818)
.+++....-|.+.|+.+.+-|++..++++++..+.|+|||..+. ..-..+.+|...-++++|++.. -+|
T Consensus 114 ~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 114 KVEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ceEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeE
Confidence 45565666799999999999999999999999999999998432 2233788999878899998854 478
Q ss_pred EEEECCCeEEEEECCCCe-------EEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECC--CCeEEEEEecCCC
Q 003459 75 AAGAASGTIKLWDLEEAK-------IVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIR--KKGCIHTYKGHTR 144 (818)
Q Consensus 75 asgs~DG~I~IWDl~t~~-------~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~--~~~~i~~l~~h~~ 144 (818)
++++.|++|++||+.... ....+.+|...|..++|++.. ..|++++.|+.+.|||+| +.++.....+|.+
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~ 273 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA 273 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence 899999999999996532 356678999999999999965 478899999999999999 5667777889999
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCC----
Q 003459 145 GVNAIRFTP-DGRWVVSGGEDNTVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETF---- 217 (818)
Q Consensus 145 ~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t-~~~i~~~~~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~---- 217 (818)
.|.|++|+| ++..||+|+.|++|++||+|. .++++.+.+|...|.++.|+|+ ...||+++.|+.+.+||+...
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 999999999 667888999999999999997 4578889999999999999997 679999999999999998642
Q ss_pred ----------eEEEEeCCCCCCeeEEEEeCCCCEEEEE-ECC-CEEEEEec
Q 003459 218 ----------ELIGSAGPETSGVRCLTFNPDGRTLLCG-LHE-SLKVFSWE 256 (818)
Q Consensus 218 ----------~~i~~~~~~~~~I~sl~fspdg~~Lasg-s~d-~I~Vwd~~ 256 (818)
+++..-.+|...|..+.|+|+..+++++ .++ .+.||.+.
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 3456678899999999999999888765 333 59999875
No 88
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=223.19 Aligned_cols=247 Identities=20% Similarity=0.407 Sum_probs=219.5
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
.+..|.||...|+.+.|+| +...+++++.|..|+||.............|..+|+.+..+|.|.||++++.||+..+.|
T Consensus 253 ~l~~~~Gh~kki~~v~~~~-~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd 331 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHK-DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD 331 (506)
T ss_pred hhhhccCcceEEEEEEecc-chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence 4567899999999999999 667899999999999999988888888889999999999999999999999999999999
Q ss_pred CCCCeEEEEEcC--CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 88 LEEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (818)
Q Consensus 88 l~t~~~v~~l~~--h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg 165 (818)
++++..+..... ..-.+++.+|||||-.|.+|..||.|+|||+..+..+..|.+|.++|..++|+.+|-||+++++|+
T Consensus 332 ~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 332 ISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDG 411 (506)
T ss_pred ccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCC
Confidence 999998877663 234589999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEEC--CCCeEEEEeCCCCCCeeEEEEeCCCCEE
Q 003459 166 TVKLWDLTAGKLLHDFKCHE-GQIQCIDFHPHEFLLATGSADRTVKFWDL--ETFELIGSAGPETSGVRCLTFNPDGRTL 242 (818)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~-~~I~sv~fspdg~~Lasgs~Dg~I~IwDl--~t~~~i~~~~~~~~~I~sl~fspdg~~L 242 (818)
.|++||+|.-+...++...+ ..+.++.|.+.|.+|+.++.|=+|++++- ..+..+..+..|.+..+++.|....+++
T Consensus 412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l 491 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYL 491 (506)
T ss_pred eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEE
Confidence 99999999988877776432 36999999999999999988777777763 3678888888888889999999999999
Q ss_pred EEEECC-CEEEEEe
Q 003459 243 LCGLHE-SLKVFSW 255 (818)
Q Consensus 243 asgs~d-~I~Vwd~ 255 (818)
++++.+ .+++|.+
T Consensus 492 ~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 492 ASTSMDAILRLYAL 505 (506)
T ss_pred eeccchhheEEeec
Confidence 988776 4666543
No 89
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.9e-24 Score=224.69 Aligned_cols=257 Identities=18% Similarity=0.305 Sum_probs=214.1
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEE
Q 003459 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127 (818)
Q Consensus 51 ~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~---~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~I 127 (818)
..+.+..|++.|+-+.|+++|+|||+++.|.+..+|++... +..+++.+|..+|..+.|+||.++|++++.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 34556789999999999999999999999999999987644 457888999999999999999999999999999999
Q ss_pred EECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-CCCCEEEEEEeCCCCEEEEEeC
Q 003459 128 WDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSA 205 (818)
Q Consensus 128 wDl~~~~~i~~l~~-h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h~~~I~sv~fspdg~~Lasgs~ 205 (818)
||+.+|.+...+.. +...+.+++|.|||..+++|+.|+.|..||+. |.....+++ ....|.+++..+||+++++.+.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 99999998888763 45789999999999999999999999999987 555555554 2356999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccc----cceeeeeecCCC
Q 003459 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW----SRLSDLNVHEGK 280 (818)
Q Consensus 206 Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~----~~v~~l~~~~g~ 280 (818)
|..|++|+.++......+ ....+|+++++|.||+++++.-.+ .+++||++..+....+..+- -.-+++-..+..
T Consensus 375 d~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred ccceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 999999999876555433 345789999999999999988655 79999999766655543332 222333446779
Q ss_pred EEEEEEcCCeEEEEEecCCCceeeeeccc
Q 003459 281 LLGCSYNQSCVGVWVVDISRIEPYTIGSV 309 (818)
Q Consensus 281 lLatg~~Dg~V~IWdvd~~~~~~~~~~~~ 309 (818)
++++|++|+.|+||+-..+++.....|+.
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~LsGHs 482 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLSGHS 482 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeecCCc
Confidence 99999999999999999998776554444
No 90
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.9e-23 Score=213.05 Aligned_cols=263 Identities=19% Similarity=0.376 Sum_probs=220.1
Q ss_pred EEEEeCCCeEEEEECCCC------------ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003459 32 LVTGGEDHKVNLWAIGKP------------NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 32 Latgs~Dg~V~lWdl~~~------------~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (818)
+++|+....|.-+++... ..+..+..|.+.|++++. ++.++++|+.|-+|+|||+.....+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 566666666665554211 235567789999999998 588999999999999999999999999999
Q ss_pred CCCCeEEEEEeCCCC--EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 100 HRSNCISVDFHPFGE--FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (818)
Q Consensus 100 h~~~V~sv~fspdg~--~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (818)
|.+.|+++.|.+.-. .|++|+.||.|.+|+.....++..+++|.+.|+.++.+|.|++-++.+.|+.++.||+-.|+.
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999998765 899999999999999999999999999999999999999999999999999999999999987
Q ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003459 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (818)
Q Consensus 178 i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (818)
-....-. ..-+.+.|+|.|.+++.+..+ .|-+|.+++......+... ..+.|+.|. ++.+|++|.++ .+.+||-+
T Consensus 162 a~v~~L~-~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-~~~~L~vG~d~~~i~~~D~d 237 (362)
T KOG0294|consen 162 AFVLNLK-NKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCATFL-DGSELLVGGDNEWISLKDTD 237 (362)
T ss_pred ceeeccC-CcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeeeec-CCceEEEecCCceEEEeccC
Confidence 7666532 233459999999988888765 6999999887766555433 446777777 45567777666 69999999
Q ss_pred CCceeccccccccceeeeee---cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 257 PIRCHDAVDVGWSRLSDLNV---HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 257 ~~~~~~~~~~~~~~v~~l~~---~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
...+...+..+-..+.++.+ +++.+|++++.||.|+|||+++..
T Consensus 238 s~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 238 SDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred CCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc
Confidence 98888888888888888875 556999999999999999999984
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=8.6e-24 Score=212.55 Aligned_cols=250 Identities=21% Similarity=0.408 Sum_probs=213.5
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC-----C
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-----S 80 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~-----D 80 (818)
.-.|-++.+|++.|+|++... +...++||+.|.++++||+.+|+++..++ ...+|..+.|+.+|++++.... .
T Consensus 42 GerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~ 119 (327)
T KOG0643|consen 42 GERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYT 119 (327)
T ss_pred CceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcc
Confidence 456788999999999999998 66789999999999999999999999998 5678999999999998887654 4
Q ss_pred CeEEEEECC-------CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEc
Q 003459 81 GTIKLWDLE-------EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFT 152 (818)
Q Consensus 81 G~I~IWDl~-------t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-~i~~l~~h~~~V~~l~fs 152 (818)
+.|.++|++ ..++...+..+.+.++.+-|.|-+++|++|..||.|.+||++++. .+..-+.|...|+.++++
T Consensus 120 ~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s 199 (327)
T KOG0643|consen 120 CFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFS 199 (327)
T ss_pred eEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhcccccccccc
Confidence 789999997 445677888888999999999999999999999999999999974 555667899999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCe--E------------EEEECCCCe
Q 003459 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT--V------------KFWDLETFE 218 (818)
Q Consensus 153 pdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~--I------------~IwDl~t~~ 218 (818)
+|..++++++.|.+-++||.++-.+++++.. ..+|++.+++|....++.|+.... | ++|++-..+
T Consensus 200 ~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eE 278 (327)
T KOG0643|consen 200 RDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEE 278 (327)
T ss_pred CCcceEEecccCccceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHH
Confidence 9999999999999999999999999999984 789999999998777777653322 1 222222234
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecCC
Q 003459 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEPI 258 (818)
Q Consensus 219 ~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~ 258 (818)
.+...++|-++|++++|+|+|+..++|++++ +++..++..
T Consensus 279 EigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 279 EIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred HhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 5667789999999999999999999998885 888877653
No 92
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.8e-23 Score=213.51 Aligned_cols=239 Identities=21% Similarity=0.416 Sum_probs=200.2
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-ceE-EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-NAI-LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~-~~i-~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~ 91 (818)
.-.+.|.+|+|||....++++|+.||+|++|+++.. ..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 456789999999977888889999999999999663 322 344568999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCC--EEEEEECCCcEEEEECCCCeEEEEEe-----------------------------
Q 003459 92 KIVRTLTGHRSNCISVDFHPFGE--FFASGSLDTNLKIWDIRKKGCIHTYK----------------------------- 140 (818)
Q Consensus 92 ~~v~~l~~h~~~V~sv~fspdg~--~Lasgs~Dg~I~IwDl~~~~~i~~l~----------------------------- 140 (818)
+. ..+..|..+|..+.|-+... .|++|+.|.+|+.||.+...++.++.
T Consensus 105 Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 105 QV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred Ce-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence 55 55666999999999988666 79999999999999998765544432
Q ss_pred --------c----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEecCCC---------CEEEEEEeCCC
Q 003459 141 --------G----HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG--KLLHDFKCHEG---------QIQCIDFHPHE 197 (818)
Q Consensus 141 --------~----h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h~~---------~I~sv~fspdg 197 (818)
. -+..++|++...|....+.|+-+|.+.|..+..+ +.-..|++|.. .|++|+|+|..
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h 263 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH 263 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence 0 1234788888888888899999999999988876 55667788763 47889999998
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCC
Q 003459 198 FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI 258 (818)
Q Consensus 198 ~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~ 258 (818)
..|++++.||+..+||-+....+.....+..+|++..|+.+|.+++.+. =|||..+
T Consensus 264 gtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~-----gYDWSkG 319 (347)
T KOG0647|consen 264 GTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL-----GYDWSKG 319 (347)
T ss_pred ceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe-----ecccccc
Confidence 8999999999999999998888888999999999999999999998763 3566554
No 93
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.1e-23 Score=211.98 Aligned_cols=245 Identities=17% Similarity=0.366 Sum_probs=210.0
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC--EEEEEECCCeEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV--LVAAGAASGTIK 84 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~--~Lasgs~DG~I~ 84 (818)
.++..|.+|.++|+|+|.+ +.++|+|+.|-+|+|||+.+...+..+..|.+.|+++.|.+.-. .|++|+.||.|.
T Consensus 34 ~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 34 KPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred eccccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence 3467889999999999994 67999999999999999999999999999999999999988764 889999999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003459 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D 164 (818)
+|+......+.++++|.+.|+.++.+|.+++-++.+.|+.+++||+-.|+.-..+.- ....+.+.|+|.|.+++.++.+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~ 189 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN 189 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc
Confidence 999999999999999999999999999999999999999999999998886665542 2234559999999999888755
Q ss_pred CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEE--eCCCCEE
Q 003459 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF--NPDGRTL 242 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~f--spdg~~L 242 (818)
.|-+|.+.+......+. ....+.|+.|. ++..|++|+.|+.|.+||.....+...+.+|...|.++.+ .|++.||
T Consensus 190 -~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 190 -KIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred -EEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEE
Confidence 57899988776655554 23557777774 4568899999999999999999999999999999999984 3567888
Q ss_pred EEEECC-CEEEEEecCC
Q 003459 243 LCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 243 asgs~d-~I~Vwd~~~~ 258 (818)
++++.+ .|+|||.+..
T Consensus 267 vTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDME 283 (362)
T ss_pred EEeccCceEEEEEcccc
Confidence 877555 5999998765
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=2.2e-23 Score=242.87 Aligned_cols=251 Identities=22% Similarity=0.425 Sum_probs=217.3
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC------------------CceEEEecCCCCCeEEEEEcCC
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK------------------PNAILSLSGHTSGIDSVSFDSS 70 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~------------------~~~i~~l~~h~~~V~~l~fspd 70 (818)
+-....|.+.|+|+.|+| ++.+||+|++|+.|.||+... -+++..+.+|...|..++|+|+
T Consensus 62 l~~m~~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred heeeccccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 446678999999999999 778999999999999998752 1367788899999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC------C
Q 003459 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT------R 144 (818)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~------~ 144 (818)
+.+|++++.|++|.|||..+.+.+..+.+|.+.|..+.|.|-|+|||+-+.|++|++|++.+....+.+..+- .
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T 220 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT 220 (942)
T ss_pred ccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999988877777765432 3
Q ss_pred CeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCeEEEEEecCCCCEEEEEEeCC------C-------C----EEEEE
Q 003459 145 GVNAIRFTPDGRWVVSGGE----DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH------E-------F----LLATG 203 (818)
Q Consensus 145 ~V~~l~fspdg~~L~sgs~----Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspd------g-------~----~Lasg 203 (818)
.+..+.|+|||++|++.-. ...+.|.+-.+.+.-..+-+|.+++.++.|+|. . . .+|+|
T Consensus 221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 5788999999999998642 346899998888888999999999999999982 1 1 68899
Q ss_pred eCCCeEEEEECCCCeEEEEeC-CCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCce
Q 003459 204 SADRTVKFWDLETFELIGSAG-PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC 260 (818)
Q Consensus 204 s~Dg~I~IwDl~t~~~i~~~~-~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~ 260 (818)
+.|+.|.||.....+++..+. -....|.+++|+|||..|++++.| .+.++.++....
T Consensus 301 SqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred cCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 999999999998888776643 346779999999999988877655 699999886543
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.1e-24 Score=237.06 Aligned_cols=286 Identities=19% Similarity=0.373 Sum_probs=234.5
Q ss_pred cCCCCEE---EEEEeeCCCcEEEEEeCCCeEEEEECCCCc------eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 14 AHSSTVN---CLKIGRKSSRVLVTGGEDHKVNLWAIGKPN------AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 14 ~H~~~V~---~lafsp~~~~lLatgs~Dg~V~lWdl~~~~------~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
.|...|. .+..+..++++|++||.||.|++|++.... .+..++.|.+.|..+....+++.|++++.|-+|+
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVK 98 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEE
Confidence 4555666 566677788899999999999999984321 4667888999999999999999999999999999
Q ss_pred EEECCCC--eEEEEEcCCCCCeEEEEE-eCCCCEEEEEECCCcEEEEECCCCe--EEEE--------Ee-cCCCCeEEEE
Q 003459 85 LWDLEEA--KIVRTLTGHRSNCISVDF-HPFGEFFASGSLDTNLKIWDIRKKG--CIHT--------YK-GHTRGVNAIR 150 (818)
Q Consensus 85 IWDl~t~--~~v~~l~~h~~~V~sv~f-spdg~~Lasgs~Dg~I~IwDl~~~~--~i~~--------l~-~h~~~V~~l~ 150 (818)
+|+...+ -+..++..|...|.|+++ -++...+|+|+.|+.|++||+.++. .+.. +. ++...|++++
T Consensus 99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 9999877 577888899999999999 7778899999999999999999772 2222 22 7888999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCe
Q 003459 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV 230 (818)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I 230 (818)
..+.|..|++|+..+.|++||.++++.+..+++|...|.++..+++|..+++++.||+|++||+...+++.++..|...|
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~V 258 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGV 258 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCCEEEEEECCC-EEEEEecCCceeccccccccceeeeee--cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 231 RCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 231 ~sl~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~~~v~~l~~--~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
+++..+|+=..+++|+.++ |..-++........+--.-.++..+.. ++..+ -++..|+.|.-|.....-
T Consensus 259 WaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~-WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 259 WALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred EEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCc-eeeeccccceecCCcccc
Confidence 9999999999999987665 555555542211111111222222322 23343 778889999999765544
No 96
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=1.8e-21 Score=208.87 Aligned_cols=267 Identities=17% Similarity=0.204 Sum_probs=206.5
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEE
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVD 108 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~ 108 (818)
.++++++.|+.|++||+.+++.+..+..+. .+.+++|+|++..+ ++++.++.|++||..+++....+..+.. +..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEE
Confidence 578899999999999999999888888654 46789999999876 5667789999999999988877765443 56789
Q ss_pred EeCCCCEEEEE-ECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEEecCCC
Q 003459 109 FHPFGEFFASG-SLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN-TVKLWDLTAGKLLHDFKCHEG 186 (818)
Q Consensus 109 fspdg~~Lasg-s~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg-~I~IwDl~t~~~i~~~~~h~~ 186 (818)
|+|+++.++++ ..++.|++||+.+.+.+..+.. ...+.+++|+|+|.+++++..++ .+.+||..+++....... ..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~ 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQ 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CC
Confidence 99999977655 5689999999999888877763 33468899999999999988775 577889998877665542 34
Q ss_pred CEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeEEEEeCCCC-------CCeeEEEEeCCCCEEEEE--ECCCEEEEEec
Q 003459 187 QIQCIDFHPHEFLLATG-SADRTVKFWDLETFELIGSAGPET-------SGVRCLTFNPDGRTLLCG--LHESLKVFSWE 256 (818)
Q Consensus 187 ~I~sv~fspdg~~Lasg-s~Dg~I~IwDl~t~~~i~~~~~~~-------~~I~sl~fspdg~~Lasg--s~d~I~Vwd~~ 256 (818)
...++.|+|++.+|+++ ..++.|++||+++++.+..+..+. .....+.|+|+|++++++ .++.+.+||.+
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 55789999999988655 468999999999998776653221 123568899999986654 34569999998
Q ss_pred CCceeccccccccceeeee-ecCCCEEEEE-EcCCeEEEEEecCCCc
Q 003459 257 PIRCHDAVDVGWSRLSDLN-VHEGKLLGCS-YNQSCVGVWVVDISRI 301 (818)
Q Consensus 257 ~~~~~~~~~~~~~~v~~l~-~~~g~lLatg-~~Dg~V~IWdvd~~~~ 301 (818)
+.+....+..+. .+..+. .++|+.|+++ ..+|.|.+||++..+.
T Consensus 238 ~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 238 TYEVLDYLLVGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCcEEEEEEeCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 777654443332 233444 4788888876 5689999999999885
No 97
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1e-23 Score=226.36 Aligned_cols=280 Identities=24% Similarity=0.344 Sum_probs=231.9
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEecC--CCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSG--HTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~---~~i~~l~~--h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
.+|..-|.++.++. ..+.++||+. |.|+|||+... ..+..+.. ....|+.+...|||+.|++|+.-.++.|||
T Consensus 416 L~HGEvVcAvtIS~-~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 416 LAHGEVVCAVTISN-PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hccCcEEEEEEecC-CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 37998899999987 6677899986 67999999543 23334432 356799999999999999999999999999
Q ss_pred CCCCeE--EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 88 LEEAKI--VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (818)
Q Consensus 88 l~t~~~--v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg 165 (818)
+..... ...+....-.++.++.+||.+..++++.||.|.|||+++...++.|++|...+.||.+++||..|.+|+-|.
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 976543 334444456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEE
Q 003459 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasg 245 (818)
+|+.||+++++.+.+.. ..+.|.++.++|++.+|+.|-+++.+.+...... ....+..|...|.++.|.+-|+++++.
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvSt 651 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVST 651 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeec
Confidence 99999999998887765 4688999999999999999999999999887643 345567788999999999999999965
Q ss_pred E-CCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEe
Q 003459 246 L-HESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 246 s-~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdv 296 (818)
+ ++-+..|...-+..+.......+.+.+-...|++++++|+.|..-.||.+
T Consensus 652 GkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 652 GKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred CchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 4 45588887665555444444455555555688999999999998888875
No 98
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.91 E-value=6.8e-23 Score=205.59 Aligned_cols=235 Identities=17% Similarity=0.273 Sum_probs=214.0
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (818)
...+|.+.|-.++|+|....+|++++.|.+|++||+..++++..+....+. ..+.|+|+|.++++++.|..|.+.|..+
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~ 137 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDART 137 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecc
Confidence 457899999999999999999999999999999999999999888754444 4678999999999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~Iw 170 (818)
.+.....+ ....+..++|+-++.+|+.....|.|.|.....-+++..+++|.....||.|+|+|++|++|+.|..+.+|
T Consensus 138 ~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 138 YKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred cceeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeecc
Confidence 88877766 55678889999888888877778999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003459 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
|+..--++..+.-++-+|..+.|+.+|++||+|++|..|-|=++++|..+..+. +.++...++|+|...+||.+.++
T Consensus 217 D~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 217 DVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 999988899998899999999999999999999999999999999999999886 45788999999999999977655
No 99
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.7e-22 Score=202.77 Aligned_cols=254 Identities=18% Similarity=0.310 Sum_probs=210.9
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC--CCcEEEEE
Q 003459 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWD 129 (818)
Q Consensus 52 i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~--Dg~I~IwD 129 (818)
.+.+......|.++.|+.+|.++++++.|.+|+|||..+++.++++..++-.|..++|......++.++. |.+|+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 3445556788999999999999999999999999999999999999988889999999887777777776 88999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 003459 130 IRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTV 209 (818)
Q Consensus 130 l~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I 209 (818)
+.+.+.++.|.+|...|..++.+|-+..+++++.|++|++||++..++...+... .-..++|.|.|-++|++...+.|
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecCCCeE
Confidence 9999999999999999999999999999999999999999999988877766643 33457899999999999988899
Q ss_pred EEEECCCCe--EEEEeC---CCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecCCceeccccccc----cceeeeeecCC
Q 003459 210 KFWDLETFE--LIGSAG---PETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGW----SRLSDLNVHEG 279 (818)
Q Consensus 210 ~IwDl~t~~--~i~~~~---~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~----~~v~~l~~~~g 279 (818)
++||++... +...+. +.....+.|.|+|||++|+.++..+ +.+.|.-.+.....+...- -++...+.+++
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 999998752 233332 3466789999999999999887765 7777776666554443222 22455566999
Q ss_pred CEEEEEEcCCeEEEEEecCCCceeeeec
Q 003459 280 KLLGCSYNQSCVGVWVVDISRIEPYTIG 307 (818)
Q Consensus 280 ~lLatg~~Dg~V~IWdvd~~~~~~~~~~ 307 (818)
+++.+|++||+|.+|+++++....-..+
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 9999999999999999988886654444
No 100
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.3e-23 Score=232.27 Aligned_cols=291 Identities=21% Similarity=0.347 Sum_probs=235.7
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCeEEEEE-cCCCCEEEEEECCCeEEE
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSF-DSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~--~~i~~l~~h~~~V~~l~f-spdg~~Lasgs~DG~I~I 85 (818)
+..++.|.+.|+.++... .++.|++++.|-+|++|+...+ -+..++..|.+.|.|+++ .++..++|+|+-|+.|.+
T Consensus 66 ~asme~HsDWVNDiiL~~-~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~Ifl 144 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCG-NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFL 144 (735)
T ss_pred hhhhhhhHhHHhhHHhhc-CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEE
Confidence 567889999999999987 5667999999999999999776 567788899999999999 788889999999999999
Q ss_pred EECCCCe--EEEE--------Ec-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC
Q 003459 86 WDLEEAK--IVRT--------LT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154 (818)
Q Consensus 86 WDl~t~~--~v~~--------l~-~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd 154 (818)
||+.++. .+.. +. ++...|++++.++.|..|++|+..+.|++||.++++.+..+++|...|.++..++|
T Consensus 145 WDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD 224 (735)
T KOG0308|consen 145 WDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD 224 (735)
T ss_pred EEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCC
Confidence 9999772 2222 23 78889999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003459 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (818)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~ 234 (818)
|..+++++.||+|++||+...+++.++..|...|+++..+|+-..+++|+.||.|..=|+++......+-....+|..+.
T Consensus 225 Gt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~ 304 (735)
T KOG0308|consen 225 GTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLH 304 (735)
T ss_pred CCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999998654444444566777777
Q ss_pred EeCCCCE-EEEEECCCEEEEEecCCceec-------------------------cccccccceeeeeecCCCEEEEEEcC
Q 003459 235 FNPDGRT-LLCGLHESLKVFSWEPIRCHD-------------------------AVDVGWSRLSDLNVHEGKLLGCSYNQ 288 (818)
Q Consensus 235 fspdg~~-Lasgs~d~I~Vwd~~~~~~~~-------------------------~~~~~~~~v~~l~~~~g~lLatg~~D 288 (818)
.+.+..- -++..+..|+=|..+....+. ++..+........-.+.+.+++-...
T Consensus 305 ~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~ 384 (735)
T KOG0308|consen 305 LHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAK 384 (735)
T ss_pred hccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCC
Confidence 6643333 333344467777554322111 01111111111122456888999999
Q ss_pred CeEEEEEecCCC
Q 003459 289 SCVGVWVVDISR 300 (818)
Q Consensus 289 g~V~IWdvd~~~ 300 (818)
|.+.+||+--..
T Consensus 385 gnv~lwDIl~~~ 396 (735)
T KOG0308|consen 385 GNVALWDILACV 396 (735)
T ss_pred CCEEEEEeeeee
Confidence 999999975544
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.9e-22 Score=215.97 Aligned_cols=282 Identities=21% Similarity=0.368 Sum_probs=230.9
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE----E-------------e-cCCCCCeEEEEEcCC
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL----S-------------L-SGHTSGIDSVSFDSS 70 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~----~-------------l-~~h~~~V~~l~fspd 70 (818)
+..+..|.-+|.||+++| +..+.++++.+|+|.=|++.+++... . - .+|...|.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~-d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP-DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeec-cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 566788999999999999 55679999999999999997766331 1 1 268889999999999
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003459 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (818)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~ 150 (818)
++||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-.....+++++.|..|++|+++....+.++.+|+..|..|.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 99999999999999999999999999999999999999998778899999999999999999999999999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC-C---
Q 003459 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-E--- 226 (818)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~-~--- 226 (818)
...-++.+-+|+.|.++++|++.. .....|.++.+.+-|++|-.+ ..+++|+.+|.|.+|++.+.+++..... |
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeecccccc
Confidence 998888888888999999999953 444567788899999999755 5789999999999999999888876421 1
Q ss_pred --------CCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc----eeccccccccceeeee-ecCCCEE-EEEEcCCeE
Q 003459 227 --------TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR----CHDAVDVGWSRLSDLN-VHEGKLL-GCSYNQSCV 291 (818)
Q Consensus 227 --------~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~----~~~~~~~~~~~v~~l~-~~~g~lL-atg~~Dg~V 291 (818)
..+|++++..|...++++|+.+ .+++|-.+.+- .+..+.. ..-+..+. +.+|+.+ +..+....+
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~-~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL-VGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc-ccEEEEEEEccCCCEEEEeccccccc
Confidence 1278999999999999999866 59999998762 2222221 12234444 4677744 444555555
Q ss_pred EEE
Q 003459 292 GVW 294 (818)
Q Consensus 292 ~IW 294 (818)
.-|
T Consensus 451 GRW 453 (479)
T KOG0299|consen 451 GRW 453 (479)
T ss_pred cee
Confidence 555
No 102
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.91 E-value=2.1e-23 Score=220.35 Aligned_cols=242 Identities=25% Similarity=0.426 Sum_probs=210.6
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
..+..+.+..+.|+.++|.+ .++.+++++.|+.+++|+++..+...++.+|++.|+++.|......+++|+.|.+|++|
T Consensus 210 ~~~~tLaGs~g~it~~d~d~-~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~W 288 (459)
T KOG0288|consen 210 ELISTLAGSLGNITSIDFDS-DNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLW 288 (459)
T ss_pred hhhhhhhccCCCcceeeecC-CCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhh
Confidence 34567778888999999999 55677888899999999999999999999999999999998877779999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
|+..+.+.+++. ..+.+..|+.+ ...+++|-.|+.|++||++...+......+. .|+++..+++|..|++++.|.+
T Consensus 289 Dl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt 364 (459)
T KOG0288|consen 289 DLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT 364 (459)
T ss_pred hhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc
Confidence 999988887765 34556666665 5678899999999999999999999988766 7999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecC----CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC--CeeEEEEeCCCC
Q 003459 167 VKLWDLTAGKLLHDFKCH----EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS--GVRCLTFNPDGR 240 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h----~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~--~I~sl~fspdg~ 240 (818)
+.++|+++......|... ....+.+.|+|++.|+++|+.||.|+||++.++++......... .|+++.|+|.|.
T Consensus 365 l~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 365 LKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGS 444 (459)
T ss_pred eeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCc
Confidence 999999999888877631 23478999999999999999999999999999999888765544 599999999999
Q ss_pred EEEEEECC-CEEEE
Q 003459 241 TLLCGLHE-SLKVF 253 (818)
Q Consensus 241 ~Lasgs~d-~I~Vw 253 (818)
+|++++.+ .+.+|
T Consensus 445 ~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 445 GLLSADKQKAVTLW 458 (459)
T ss_pred hhhcccCCcceEec
Confidence 99988766 36666
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=1.6e-22 Score=225.15 Aligned_cols=241 Identities=23% Similarity=0.444 Sum_probs=216.9
Q ss_pred EEEecCCCCEEE-EEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 10 QEFVAHSSTVNC-LKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 10 ~~~~~H~~~V~~-lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
..+.+|.+.|.+ ++|.+.++..+++|+.|++|.+|......++..+.+|...|.|+....++. +++|+.|.++++|-.
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 557889998888 888874555699999999999999999999999999999999999888887 889999999999985
Q ss_pred CCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (818)
Q Consensus 89 ~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~ 168 (818)
+++...+.+|...|+++.+-|.+ .+++|+.|.+|++|.- ++++++|.+|.+.|+.+++-+++ .|++++.||.|+
T Consensus 130 --~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir 203 (745)
T KOG0301|consen 130 --GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIR 203 (745)
T ss_pred --hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEE
Confidence 45566699999999999999987 8999999999999985 78899999999999999999765 488999999999
Q ss_pred EEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003459 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
.|++ +|..+.++.+|+.-++++....++..++++++|++++||+.. ++...+......|+++.+-++|..++.|+++
T Consensus 204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG 280 (745)
T KOG0301|consen 204 LWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDG 280 (745)
T ss_pred EEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCc
Confidence 9999 789999999999999999988888899999999999999987 7777887777789999999999998888888
Q ss_pred CEEEEEecCCce
Q 003459 249 SLKVFSWEPIRC 260 (818)
Q Consensus 249 ~I~Vwd~~~~~~ 260 (818)
.++||..+..+.
T Consensus 281 ~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 281 RVRVFTVDKDRK 292 (745)
T ss_pred eEEEEEeccccc
Confidence 999999886544
No 104
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.5e-22 Score=216.65 Aligned_cols=232 Identities=24% Similarity=0.479 Sum_probs=205.3
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (818)
++|...|.|++.++ +++||++|+.|..|.||+..+.+.++.+.+|.+.|.+++|-.....+++++.|+.|++|+++...
T Consensus 199 ~~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLS 277 (479)
T ss_pred ccccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhH
Confidence 48999999999999 78899999999999999999999999999999999999998888889999999999999999999
Q ss_pred EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172 (818)
Q Consensus 93 ~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl 172 (818)
.+.++.+|++.|..|....-++.+-+|+.|+++++|++.. .....|.+|.+.+.|++|-.+ ..|++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence 9999999999999999988788888888999999999943 445567889989999999854 57999999999999999
Q ss_pred CCCeEEEEEec-C-----------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----eEEEEeCCCCCCeeEEEEe
Q 003459 173 TAGKLLHDFKC-H-----------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPETSGVRCLTFN 236 (818)
Q Consensus 173 ~t~~~i~~~~~-h-----------~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~----~~i~~~~~~~~~I~sl~fs 236 (818)
...+++.+... | ...|++++..|...++|+|+.+|.|++|-+..+ +++..+. ..+.|++++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 99988887652 2 127899999999999999999999999999876 4455444 56889999999
Q ss_pred CCCCEEEEEECC
Q 003459 237 PDGRTLLCGLHE 248 (818)
Q Consensus 237 pdg~~Lasgs~d 248 (818)
++|+.|++|...
T Consensus 435 ~sgk~ivagiGk 446 (479)
T KOG0299|consen 435 NSGKRIVAGIGK 446 (479)
T ss_pred cCCCEEEEeccc
Confidence 999988887543
No 105
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.7e-22 Score=212.73 Aligned_cols=279 Identities=16% Similarity=0.267 Sum_probs=232.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCe
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~--~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~ 92 (818)
.+.|++|.|+| +..+|.+++.||+++||.++ ....++.+.-...+|.+.+|.|+|. .+++++....++.||+++++
T Consensus 213 ~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 46899999999 88899999999999999884 3445666666788999999999998 89999999999999999987
Q ss_pred EEEE--EcCCC-CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 93 IVRT--LTGHR-SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (818)
Q Consensus 93 ~v~~--l~~h~-~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~I 169 (818)
..+. ..++. ..+.....++++++|+..+..|.|++....+++.+..++ -.+.|..++|+.|++.|++++.+|.|++
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 6443 33443 356778889999999999999999999999999999988 4677999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCE--EEEEEeCCCCEEEEEeCCCeEEEEECCC------CeEEEEeCCCCCCeeEEEEeCCCCE
Q 003459 170 WDLTAGKLLHDFKCHEGQI--QCIDFHPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVRCLTFNPDGRT 241 (818)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I--~sv~fspdg~~Lasgs~Dg~I~IwDl~t------~~~i~~~~~~~~~I~sl~fspdg~~ 241 (818)
||++...+++.|.. .+.| ++++.++++.|||+|+..|.|.|||.++ .+++..+......|++|+|++|++.
T Consensus 371 ~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 99999999999884 3333 5677789999999999999999999764 4566666667788999999999999
Q ss_pred EEEEEC---CCEEEEEecCCceecccc---ccccceeeeee-cCCCEEEEEEcCCeEEEEEec
Q 003459 242 LLCGLH---ESLKVFSWEPIRCHDAVD---VGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 242 Lasgs~---d~I~Vwd~~~~~~~~~~~---~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd 297 (818)
|+.++. +.+++-.+.....+..+. .....++++.+ +.+.+||.|..+|.|.+|.+.
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 997754 358888877665554443 33445667765 779999999999999999864
No 106
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.7e-21 Score=188.99 Aligned_cols=247 Identities=22% Similarity=0.437 Sum_probs=206.4
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-----EEEecCCCCCeEEEEEcC----CCCEEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-----ILSLSGHTSGIDSVSFDS----SEVLVAAGA 78 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~-----i~~l~~h~~~V~~l~fsp----dg~~Lasgs 78 (818)
..+.-+.|.+.|.|.+|+| .+.++++|+.|.+|++..++...+ -..+.-|.+.|..++|-. .+.+|++++
T Consensus 81 ~~kr~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g 159 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG 159 (350)
T ss_pred EeeeccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC
Confidence 3445678999999999999 778999999999999987754332 346777999999999953 345676654
Q ss_pred -CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec--C-----CCCeEEEE
Q 003459 79 -ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG--H-----TRGVNAIR 150 (818)
Q Consensus 79 -~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~--h-----~~~V~~l~ 150 (818)
.|..|++-|-..|+....+.+|.+.|.++ ++=++-.|++|+.|.+|++||++-..++.++.. | ...|.+++
T Consensus 160 agdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~ 238 (350)
T KOG0641|consen 160 AGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVA 238 (350)
T ss_pred CCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEE
Confidence 47788888999999999999999999876 333488999999999999999999888887742 2 35699999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----eEEEEeCCC
Q 003459 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPE 226 (818)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~----~~i~~~~~~ 226 (818)
..|.|++|++|-.|....+||++.++.++.|..|...|.|+.|+|...++++++.|..|++-|++.. -.+.....|
T Consensus 239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh 318 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH 318 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999998742 123345567
Q ss_pred CCCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003459 227 TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (818)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (818)
...+..+.|+|..-.+++.+.+ ...+|-++
T Consensus 319 kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 319 KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 8888999999988766666555 68888764
No 107
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.89 E-value=1.8e-22 Score=206.18 Aligned_cols=248 Identities=22% Similarity=0.416 Sum_probs=210.0
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
-.|++|..|.+.|+++.|+| ...+|++|+.|++|++||+.+....+-++ ....+|.++.|+|.|.+|++|..-.+++
T Consensus 163 PvIRTlYDH~devn~l~FHP-re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~r 241 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHP-RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLR 241 (430)
T ss_pred ceEeehhhccCcccceeecc-hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCcee
Confidence 45789999999999999999 77899999999999999997654332222 3567899999999999999999999999
Q ss_pred EEECCCCeEEEEEc---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCC-CCeEEEEEcCCCCEEE
Q 003459 85 LWDLEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHT-RGVNAIRFTPDGRWVV 159 (818)
Q Consensus 85 IWDl~t~~~v~~l~---~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~-~h~-~~V~~l~fspdg~~L~ 159 (818)
+||+.+.++...-. +|.+.|+++.+++.+++.++|+.||.|++||--+++|+.++. .|. ..|.+..|..+|++++
T Consensus 242 lYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiL 321 (430)
T KOG0640|consen 242 LYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYIL 321 (430)
T ss_pred EEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEe
Confidence 99999998776543 688999999999999999999999999999999999998885 454 5688999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCC--C---CEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCeEEEEe-CCCCCCeeE
Q 003459 160 SGGEDNTVKLWDLTAGKLLHDFKCHE--G---QIQCIDFHPHEFLLATGSA-DRTVKFWDLETFELIGSA-GPETSGVRC 232 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~--~---~I~sv~fspdg~~Lasgs~-Dg~I~IwDl~t~~~i~~~-~~~~~~I~s 232 (818)
+.+.|..+++|.+.+++.+..+.+-. + --+...|+..+.+++.-.+ .+.+.-||.++...+..+ .+|.+.++.
T Consensus 322 sSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~ 401 (430)
T KOG0640|consen 322 SSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRW 401 (430)
T ss_pred ecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceE
Confidence 99999999999999999999987531 1 1244567777777776553 467999999998765543 578999999
Q ss_pred EEEeCCCCEEEEEECC-CEEEEEe
Q 003459 233 LTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
+.-+|.+..++++++| ..++|--
T Consensus 402 i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 402 IVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred EEeCCCCCceeeecccceeeeeee
Confidence 9999999999988888 6899864
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=5.7e-21 Score=216.36 Aligned_cols=289 Identities=20% Similarity=0.313 Sum_probs=245.6
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeE
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTI 83 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I 83 (818)
....+.+|+++.+.|+++.-+| --.++|.|..+|+|.++++..++.+.+++...+.|+.+.|..||. .+++|+..|.+
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m 269 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDM 269 (910)
T ss_pred cCcEEEEecccccceeEeccCC-cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceE
Confidence 4456789999999999999999 667899999999999999999999999995569999999999987 45666667999
Q ss_pred EEEECCCCeEEEEEc-----------------------------------------------C-----------------
Q 003459 84 KLWDLEEAKIVRTLT-----------------------------------------------G----------------- 99 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~-----------------------------------------------~----------------- 99 (818)
.+||++..+.+..+. |
T Consensus 270 ~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 270 AFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred EEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence 999986432211100 0
Q ss_pred --------------------------------------------------------------------------------
Q 003459 100 -------------------------------------------------------------------------------- 99 (818)
Q Consensus 100 -------------------------------------------------------------------------------- 99 (818)
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence
Q ss_pred -----------C------CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCCCEEE
Q 003459 100 -----------H------RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 100 -----------h------~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l---~~h~~~V~~l~fspdg~~L~ 159 (818)
+ ...+.+++.++.|++.+.|...|.|-+|++++|-....| ..|..+|+.++...-++.++
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~v 509 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLV 509 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEE
Confidence 1 134456666666777888888888888888888777777 47999999999998889999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003459 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg 239 (818)
+++.+|.+++||......+..++. ...+.++..+....+++.+..|-.|.++|..+.+.+..+.+|...|++++|||||
T Consensus 510 sa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg 588 (910)
T KOG1539|consen 510 SAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG 588 (910)
T ss_pred EccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC
Confidence 999999999999999888888773 5678899999988899999999999999999999999999999999999999999
Q ss_pred CEEEEEECC-CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcC-CeEEEEE
Q 003459 240 RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQ-SCVGVWV 295 (818)
Q Consensus 240 ~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~D-g~V~IWd 295 (818)
++|++++.| .|++||+.++.+.+.+.+.-.....-..++|.+||+...| .-|++|.
T Consensus 589 rWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 589 RWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred cEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999988775 6999999999999998887777766677999999999888 7799994
No 109
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.4e-21 Score=220.47 Aligned_cols=275 Identities=17% Similarity=0.239 Sum_probs=224.3
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~-~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~ 91 (818)
.+|...-+.|+|.| ++.+|++++.||.|++|+.... +....+..+...|.+++. ++.+|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCC
Confidence 58999999999999 5569999999999999987655 444444447778888776 4558999999999999999988
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 92 ~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
+.-..+....-++.+++|+-+|+++|.|+.|-.|++.+..+......+++|.++|.++.|+|.+++||+.+.||.|++||
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 77666666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEec-------C-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC--CCCCeeEEEEeCCCCE
Q 003459 172 LTAGKLLHDFKC-------H-EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--ETSGVRCLTFNPDGRT 241 (818)
Q Consensus 172 l~t~~~i~~~~~-------h-~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~--~~~~I~sl~fspdg~~ 241 (818)
+.++.+...+.+ . ...+..++|+|++..++....|+.|++|+..++.....+.. +...+.+++|+|.|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 999887766543 1 34567899999988888888899999999999998887654 3445899999999999
Q ss_pred EEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEE
Q 003459 242 LLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 242 Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IW 294 (818)
||+++-+ .|.||||++... ......+.++.+ ++...+.+-...|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9988655 699999997222 222334445554 455555555555555555
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=5.2e-20 Score=197.49 Aligned_cols=257 Identities=14% Similarity=0.182 Sum_probs=197.7
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLW 86 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IW 86 (818)
.++.+..|. .+.+++|+|++..++++++.++.|++||..+++....+..+.. +..++|+|+++.++++ +.++.|++|
T Consensus 23 ~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~ 100 (300)
T TIGR03866 23 VTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVI 100 (300)
T ss_pred eEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEE
Confidence 455666554 4678999996655567788899999999998888777765544 5678999999977655 458999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC-cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CC
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT-NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-ED 164 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg-~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~D 164 (818)
|+.+++.+..+.. ...+.+++|+|++.+++++..++ .+.+||..+++....+.. .....+++|+|+|++|++++ .+
T Consensus 101 d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 101 DIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred ECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCC
Confidence 9999888877763 34467899999999999988765 567789988877665543 33467899999999886554 58
Q ss_pred CeEEEEECCCCeEEEEEecCC-----C--CEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003459 165 NTVKLWDLTAGKLLHDFKCHE-----G--QIQCIDFHPHEFLLATG-SADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~-----~--~I~sv~fspdg~~Lasg-s~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fs 236 (818)
+.|++||+.+++.+..+..+. . ....+.|+|++.+++++ +.++.|.+||+++++.+..+. +...+.+++|+
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~ 257 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFT 257 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEEC
Confidence 999999999998877665321 1 23568899999876553 456789999999988776553 34578999999
Q ss_pred CCCCEEEEEE--CCCEEEEEecCCceecccccccc
Q 003459 237 PDGRTLLCGL--HESLKVFSWEPIRCHDAVDVGWS 269 (818)
Q Consensus 237 pdg~~Lasgs--~d~I~Vwd~~~~~~~~~~~~~~~ 269 (818)
|+|++|+++. ++.|.+||++..++...+..+..
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 292 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRL 292 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccc
Confidence 9999998764 45799999999888776655533
No 111
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=215.88 Aligned_cols=300 Identities=17% Similarity=0.292 Sum_probs=243.0
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCC----------CcEEEEEeCCCeEEEEECCCCceEEE-------------------
Q 003459 4 KRAYKLQEFVAHSSTVNCLKIGRKS----------SRVLVTGGEDHKVNLWAIGKPNAILS------------------- 54 (818)
Q Consensus 4 ~r~~kl~~~~~H~~~V~~lafsp~~----------~~lLatgs~Dg~V~lWdl~~~~~i~~------------------- 54 (818)
++..|...+..|...|+.+.--|-+ ...|+|++.|++|++|++..+..-..
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~ 436 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST 436 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence 3455677788899999998866511 12589999999999999864211000
Q ss_pred ------------------ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCC---C
Q 003459 55 ------------------LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPF---G 113 (818)
Q Consensus 55 ------------------l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspd---g 113 (818)
..+....+.+++.+|+|++||+|..-|+|++|++..-+....+..|...|.|+.|+-- .
T Consensus 437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhh
Confidence 0123457999999999999999999999999999999999999999999999999852 3
Q ss_pred CEEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcCCC--CEEEEEECCCeEEEEECCCCeEEEEEe-----cCC
Q 003459 114 EFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDG--RWVVSGGEDNTVKLWDLTAGKLLHDFK-----CHE 185 (818)
Q Consensus 114 ~~Lasgs~Dg~I~IwDl~~-~~~i~~l~~h~~~V~~l~fspdg--~~L~sgs~Dg~I~IwDl~t~~~i~~~~-----~h~ 185 (818)
++|++++.|..|++||+.. ...++++.+|...|+++.|--.| ..+++++.|..|.+--.+.......|. ...
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~k 596 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSK 596 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccccccc
Confidence 5899999999999999864 45678899999999999998877 788999999887654333111111121 123
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC---CCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCcee
Q 003459 186 GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP---ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 261 (818)
Q Consensus 186 ~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~---~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~ 261 (818)
..++.|+..|..+++++++.|..|+|||++++++...|++ |.+....+...|.|.||++...| .+-+||+-+++|.
T Consensus 597 tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcv 676 (1080)
T KOG1408|consen 597 TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECV 676 (1080)
T ss_pred ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhh
Confidence 5689999999999999999999999999999999998864 45678889999999999987555 7999999999999
Q ss_pred ccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 262 DAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 262 ~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
...-.+...++.+.+ .|-+.|++.+.||+|.||.+....+..
T Consensus 677 A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~mii~ 719 (1080)
T KOG1408|consen 677 AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLTMIIR 719 (1080)
T ss_pred hhhcCcchheeeeeecccchhheeecCCceEEEEECchhHhHH
Confidence 988888888888877 567999999999999999998865543
No 112
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.4e-21 Score=200.08 Aligned_cols=255 Identities=24% Similarity=0.437 Sum_probs=217.4
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEE
Q 003459 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129 (818)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwD 129 (818)
..+..+.||.+.|+.++-......+.+++.|.+.+||.+++|.++.++.||.+.|.++.|++.+.++++++.|++-+||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 34566789999999999988778999999999999999999999999999999999999999999999999999999996
Q ss_pred C------CC----------------------------------CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 130 I------RK----------------------------------KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (818)
Q Consensus 130 l------~~----------------------------------~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~I 169 (818)
. .. ..++..+.+|.+.|.+..|...|+.+++++.|.+..+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 2 10 0245667899999999999999999999999999999
Q ss_pred EECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003459 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t-~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
||+.+|..+..+.+|....+.++-+|..+++++.+.|.+.++||++. -..+..|++|...|++..|.-|.+ +++|++|
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDD 377 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDD 377 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCC
Confidence 99999999999999999999999999999999999999999999984 345778999999999999997764 5666666
Q ss_pred -CEEEEEecCCce-eccccccccceeeeeec-CCCEEEEEEcCCeEEEEEecCCCceeeee
Q 003459 249 -SLKVFSWEPIRC-HDAVDVGWSRLSDLNVH-EGKLLGCSYNQSCVGVWVVDISRIEPYTI 306 (818)
Q Consensus 249 -~I~Vwd~~~~~~-~~~~~~~~~~v~~l~~~-~g~lLatg~~Dg~V~IWdvd~~~~~~~~~ 306 (818)
.++|||+...+. +..+... +.+.-+.+. .+++++.--++..|++||+++.++..+..
T Consensus 378 rTvKvWdLrNMRsplATIRtd-S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 378 RTVKVWDLRNMRSPLATIRTD-SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred ceEEEeeeccccCcceeeecC-CccceeEeecCCceEEeccCCceEEEEecCCCccccCCc
Confidence 799999987654 3333332 233344444 44688888888999999999999887654
No 113
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=9.9e-21 Score=194.44 Aligned_cols=266 Identities=18% Similarity=0.259 Sum_probs=209.5
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV 94 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v 94 (818)
-.+.|..+.|+| .+..|++++.||.+++|++........+. |..++.+++|.+ ...+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~-~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSP-SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcC-cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 357899999998 45556677799999999998775555555 899999999986 557889999999999999988765
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003459 95 RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174 (818)
Q Consensus 95 ~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t 174 (818)
. +..|...|.|+.+.+....+++|++|++|++||.+...+...+.. ...|.++... |+.|++|+.|..+.+||+++
T Consensus 89 ~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn 164 (323)
T KOG1036|consen 89 Q-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRN 164 (323)
T ss_pred e-eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccc
Confidence 4 445999999999999888999999999999999998666666653 3478888876 77899999999999999998
Q ss_pred CeEEEEEe--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----eEEEEeCCC---------CCCeeEEEEeCCC
Q 003459 175 GKLLHDFK--CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----ELIGSAGPE---------TSGVRCLTFNPDG 239 (818)
Q Consensus 175 ~~~i~~~~--~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~----~~i~~~~~~---------~~~I~sl~fspdg 239 (818)
.....+.. .-...+.|+++.|++.-+++++-||.|.+=.++.. +.-..++.| -.+|++|+|+|--
T Consensus 165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~ 244 (323)
T KOG1036|consen 165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH 244 (323)
T ss_pred ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence 66544332 23457899999999888999999999887666544 222333333 2368999999998
Q ss_pred CEEEEEECCC-EEEEEecCCceeccccccccceeeeee-cCCCEEEEEEc
Q 003459 240 RTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYN 287 (818)
Q Consensus 240 ~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~ 287 (818)
..+++|+.|+ +.+||..+.+.+..+.---..+..+.+ .+|..||+++.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 8899887665 889999888877666444343555554 78999988754
No 114
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.5e-21 Score=195.23 Aligned_cols=284 Identities=19% Similarity=0.315 Sum_probs=216.7
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-----eEEEecCCCCCeEEEEEcCCCCEEEE-EECC
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHTSGIDSVSFDSSEVLVAA-GAAS 80 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~-----~i~~l~~h~~~V~~l~fspdg~~Las-gs~D 80 (818)
+.+..+++|.+.|+|++|+. +|..|+|++.|+.|++|++.+.. ++. ..-.-+-.+.+.|.||-+-+++ .-..
T Consensus 77 l~~~~LKgH~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R-~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIR-QNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhhhhhhccCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhh-ccccCCCceEEEECCCcceEEEEEccC
Confidence 34557889999999999998 77889999999999999986532 111 1112234678999998775544 4455
Q ss_pred CeEEEEECCC---CeEEEE---------EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEE
Q 003459 81 GTIKLWDLEE---AKIVRT---------LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA 148 (818)
Q Consensus 81 G~I~IWDl~t---~~~v~~---------l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~ 148 (818)
.++++|.+.. |..... -..|...+..+-.-..+.+|++++.|..|.+|+++ |+.+..+......-+.
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 6899998643 221111 12355566667677778899999999999999998 8888888877777788
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECC---CC-----eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC----
Q 003459 149 IRFTPDGRWVVSGGEDNTVKLWDLT---AG-----KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET---- 216 (818)
Q Consensus 149 l~fspdg~~L~sgs~Dg~I~IwDl~---t~-----~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t---- 216 (818)
.+.+|+|+++++++....|++|.+- .| ..+.++++|.+.|..++|+++...+++.+.||+++|||++-
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 8999999999999999999999863 22 34667889999999999999999999999999999999862
Q ss_pred ---CeEEEEe----CCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccc-cccccceeeeee-cCCCEEEEEEc
Q 003459 217 ---FELIGSA----GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV-DVGWSRLSDLNV-HEGKLLGCSYN 287 (818)
Q Consensus 217 ---~~~i~~~----~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~-~~~~~~v~~l~~-~~g~lLatg~~ 287 (818)
.+.+... ....+....+.++|.|+.|+++....+++|.-+.++....+ +.+...++++.+ .+|++++++++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence 1122221 11233345899999999999998889999999988877665 566677777776 78999998865
Q ss_pred CCeEEEE
Q 003459 288 QSCVGVW 294 (818)
Q Consensus 288 Dg~V~IW 294 (818)
- .+++.
T Consensus 394 r-~vrv~ 399 (420)
T KOG2096|consen 394 R-YVRVI 399 (420)
T ss_pred e-eeeee
Confidence 4 55554
No 115
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=209.99 Aligned_cols=221 Identities=21% Similarity=0.340 Sum_probs=197.7
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC------
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE------ 89 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~------ 89 (818)
.++|.|++-+| .+.+|+.|+..|.|++|.+.+|..+..+.+|-..|+|+.|+.||.+|++|+.||.|.+|.+.
T Consensus 81 Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~ 159 (476)
T KOG0646|consen 81 PGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD 159 (476)
T ss_pred ccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence 57799999999 78888888899999999999999999999999999999999999999999999999999863
Q ss_pred ---CCeEEEEEcCCCCCeEEEEEeCCC--CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003459 90 ---EAKIVRTLTGHRSNCISVDFHPFG--EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 90 ---t~~~v~~l~~h~~~V~sv~fspdg--~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D 164 (818)
+-++...|..|.-+|+++...+.| .++++++.|.++++||+..+..+.++. ....+.+++.+|-++.+++|+.+
T Consensus 160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCc
Confidence 346788899999999999887654 589999999999999999999888876 56779999999999999999999
Q ss_pred CeEEEEECCCC----------------eEEEEEecCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC
Q 003459 165 NTVKLWDLTAG----------------KLLHDFKCHEG--QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (818)
Q Consensus 165 g~I~IwDl~t~----------------~~i~~~~~h~~--~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~ 226 (818)
|.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.+++.++...
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~ 318 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS 318 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh
Confidence 99999887532 34556778887 9999999999999999999999999999999999888767
Q ss_pred CCCeeEEEEeCC
Q 003459 227 TSGVRCLTFNPD 238 (818)
Q Consensus 227 ~~~I~sl~fspd 238 (818)
.++|+.+.+.|-
T Consensus 319 kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 319 KGPVTNLQINPL 330 (476)
T ss_pred ccccceeEeecc
Confidence 788999988664
No 116
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=5.2e-21 Score=196.22 Aligned_cols=278 Identities=16% Similarity=0.235 Sum_probs=214.4
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 003459 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT 98 (818)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~ 98 (818)
-.|+.|++ .|.+||.|+.||.|.|||+.+...-..+.+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999 78899999999999999999999888999999999999999999999999999999999999999999888
Q ss_pred CCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEec------CCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 99 GHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKG------HTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 99 ~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~~------h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
..++|+.+.|+|... .+++.-.+..-.+.++... ++++-. ......+..|.+.|+++++|...|.+.+||
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~ 181 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYD 181 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEe
Confidence 789999999999664 3333334444555555442 222211 111123346889999999999999999999
Q ss_pred CCCCeEEEEEecCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE---------EEEeCC--CCCCeeEEEEeCCC
Q 003459 172 LTAGKLLHDFKCHE-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL---------IGSAGP--ETSGVRCLTFNPDG 239 (818)
Q Consensus 172 l~t~~~i~~~~~h~-~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~---------i~~~~~--~~~~I~sl~fspdg 239 (818)
..+-+++..++... ..|..+.|+..|.+|++-+.|+.|+.|+++.--. .+.++. ....-.+++|+.+|
T Consensus 182 a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg 261 (405)
T KOG1273|consen 182 AETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG 261 (405)
T ss_pred cchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCc
Confidence 99999999998655 7899999999999999999999999999873111 111111 12334678999999
Q ss_pred CEEEEEECC--CEEEEEecCCceeccccccc-cceeeeeecCCCEEEEEEcCCeEEEEEecCCC
Q 003459 240 RTLLCGLHE--SLKVFSWEPIRCHDAVDVGW-SRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 240 ~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~-~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
.|+++|+.. .+.||.-..+...+++...- ..+-++.+|.-+.++.+-..|.|+||....-.
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQVE 325 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeeccCCceEEEEeeccc
Confidence 999988765 47777777777666654433 33444555555555666689999999865544
No 117
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=9.3e-21 Score=192.73 Aligned_cols=285 Identities=19% Similarity=0.368 Sum_probs=213.7
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc------------eEE---EecCCCCCeEEEEEcC-CCCEEEE
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN------------AIL---SLSGHTSGIDSVSFDS-SEVLVAA 76 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~------------~i~---~l~~h~~~V~~l~fsp-dg~~Las 76 (818)
..|.+.|+.+.+.+..++++++|+.||.|.+||++... ++. .-.+|...|..+.|.| |.-++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46999999999999999999999999999999996432 110 1136888999999998 5568889
Q ss_pred EECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC---CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003459 77 GAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG---EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (818)
Q Consensus 77 gs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg---~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp 153 (818)
++.|.++++||..+-+....|+ ..+.|++-+|+|-. .++|+|..+-.|++.|+..|.+-+++.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999999888887 56778888998854 4788899999999999999999999999999999999999
Q ss_pred CCCE-EEEEECCCeEEEEECCCC-eEEEEE--------------ecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 003459 154 DGRW-VVSGGEDNTVKLWDLTAG-KLLHDF--------------KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF 217 (818)
Q Consensus 154 dg~~-L~sgs~Dg~I~IwDl~t~-~~i~~~--------------~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~ 217 (818)
...| |++|+.||.|++||++.. .+...+ ..|.+.+..++|..++.++++.+.|..+++|+..+|
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 7665 678999999999999853 222222 246788999999999999999999999999999887
Q ss_pred eEEEE-eCC--CC----CCeeEEEEeCC-CCEEEEEECCCEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcC
Q 003459 218 ELIGS-AGP--ET----SGVRCLTFNPD-GRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQ 288 (818)
Q Consensus 218 ~~i~~-~~~--~~----~~I~sl~fspd-g~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~D 288 (818)
+-... +.+ +. -.+. +. +.+ +-++..-.++++.++.+-.+.....++.+...+.+.+. ++=+...+|..|
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d 356 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMN 356 (397)
T ss_pred cccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccC
Confidence 53211 100 00 0111 11 111 22222333455666666666666666666554444443 444667788889
Q ss_pred CeEEEEEecCCC
Q 003459 289 SCVGVWVVDISR 300 (818)
Q Consensus 289 g~V~IWdvd~~~ 300 (818)
+.|..|......
T Consensus 357 ~ni~~w~p~l~~ 368 (397)
T KOG4283|consen 357 GNIYMWSPALKS 368 (397)
T ss_pred CccccccccccC
Confidence 999999764333
No 118
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.9e-20 Score=203.64 Aligned_cols=287 Identities=18% Similarity=0.266 Sum_probs=225.2
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-ceEEEecCC-CCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-NAILSLSGH-TSGIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~-~~i~~l~~h-~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
+..+.+.--...|.|+||+.++ +.||.+-.||.|.||++..+ -+...+.++ ...|.+++|.+.+ .|++.+.+|.|.
T Consensus 16 hrcrf~d~~Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 16 HRCRFVDYKPSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSIT 93 (691)
T ss_pred EEEEEEeeeccceEEEEEeccC-CceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEE
Confidence 3444445567899999999954 56999999999999999654 333445554 4689999999555 566778899999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEE
Q 003459 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT--YKGHTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~--l~~h~~~V~~l~fspdg~~L~sgs 162 (818)
-||+.+++....+....+.|++++.+|.+..++.|+.||.++.+++..++.... +....+.|.++.|+|++..|+.|+
T Consensus 94 EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 94 EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 999999999999999999999999999999999999999888888877665433 344568899999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEe-----c---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003459 163 EDNTVKLWDLTAGKLLHDFK-----C---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~-----~---h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~ 234 (818)
.||.|++||...+..++... . ...-|+++.|-.++ .|++|...|+|.+||...+.++..+..|...|.+++
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~La 252 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALA 252 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEE
Confidence 99999999999988766222 1 12347888887554 889999999999999999999999999999999999
Q ss_pred EeCCCCEEEEEECC-CEEEEEecCCcee----ccccccccceeeeeecCCCEEEEEEcCCeEEEEEec
Q 003459 235 FNPDGRTLLCGLHE-SLKVFSWEPIRCH----DAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 235 fspdg~~Lasgs~d-~I~Vwd~~~~~~~----~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd 297 (818)
..+++.++++++-+ .+.-|...+.+.. .....+...+..+...+. .+.+|+.|..+.+-...
T Consensus 253 v~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 253 VADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSSR 319 (691)
T ss_pred EcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEEcccc
Confidence 99998888877655 5666666555431 112344444555555443 78888888877665443
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.4e-21 Score=194.49 Aligned_cols=243 Identities=20% Similarity=0.356 Sum_probs=197.3
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEE
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~---~~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IWD 87 (818)
..|.+.|..+...- -+..|||++.|++|+|+.+... +.+.++.||.++|..++|.. .|.+||++++||+|.||.
T Consensus 8 t~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 56888888887766 5667999999999999998543 56788999999999999954 799999999999999999
Q ss_pred CCCCeE--EEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCC-e--EEEEEecCCCCeEEEEEcCC---C--
Q 003459 88 LEEAKI--VRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKK-G--CIHTYKGHTRGVNAIRFTPD---G-- 155 (818)
Q Consensus 88 l~t~~~--v~~l~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~-~--~i~~l~~h~~~V~~l~fspd---g-- 155 (818)
-+.++- ......|...|++++|-|. |-.|++++.||.|.|.+++.. . .......|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 887742 3345679999999999885 458999999999999998754 2 23345679999999999984 4
Q ss_pred ---------CEEEEEECCCeEEEEECCCCe--EEEEEecCCCCEEEEEEeCC----CCEEEEEeCCCeEEEEECCCC--e
Q 003459 156 ---------RWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHPH----EFLLATGSADRTVKFWDLETF--E 218 (818)
Q Consensus 156 ---------~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~~I~sv~fspd----g~~Lasgs~Dg~I~IwDl~t~--~ 218 (818)
+.|++|+.|..|+||+...+. .-..+.+|.+.|..++|.|. ..+||+++.||+|.||-.+.- .
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 679999999999999998753 34457889999999999996 358999999999999976631 1
Q ss_pred -EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003459 219 -LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (818)
Q Consensus 219 -~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (818)
....+......+..+.|+..|..|+++..+ .+.+|.-+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 122234456789999999999999977555 58887543
No 120
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.87 E-value=4.6e-21 Score=207.04 Aligned_cols=236 Identities=22% Similarity=0.390 Sum_probs=184.3
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE------------EecCCCCCeEEEEEcCCC-CEEEEEECCCeE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL------------SLSGHTSGIDSVSFDSSE-VLVAAGAASGTI 83 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~------------~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I 83 (818)
..|++++|++.++.+|+.. .....+|+|-...+... ..+||...++|.+|+|.. ..+++++.||++
T Consensus 215 h~i~sl~ys~Tg~~iLvvs-g~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVS-GSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred cccceeeecCCCCeEEEEe-cCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 3689999999666555544 45678999864333222 235899999999999965 478899999999
Q ss_pred EEEECCCCe-EEEEEc-----CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe---EEEEEecCCC--CeEEEEEc
Q 003459 84 KLWDLEEAK-IVRTLT-----GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG---CIHTYKGHTR--GVNAIRFT 152 (818)
Q Consensus 84 ~IWDl~t~~-~v~~l~-----~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~---~i~~l~~h~~--~V~~l~fs 152 (818)
+|||+...+ ....+. +..-+++.++|+++|+.||+|+.||.|.+|+..... ....-++|.. .|+||.|+
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS 373 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS 373 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEec
Confidence 999997654 223332 334578999999999999999999999999986433 2333356776 89999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCC-eEEEEEec--CCCCEEEEEEeCCCCEEEEEeC------CCeEEEEECCCCeEEEEe
Q 003459 153 PDGRWVVSGGEDNTVKLWDLTAG-KLLHDFKC--HEGQIQCIDFHPHEFLLATGSA------DRTVKFWDLETFELIGSA 223 (818)
Q Consensus 153 pdg~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~--h~~~I~sv~fspdg~~Lasgs~------Dg~I~IwDl~t~~~i~~~ 223 (818)
+||++|++-+.|+++++||++.. +++..+.+ ...+-+.++|+|+.++|++|+. .|++.+||..+.+.+..+
T Consensus 374 ~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 374 YDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred cccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 99999999999999999999975 45555543 2335678899999999999863 578999999999999998
Q ss_pred CCCCCCeeEEEEeCCCCEEEEEECC-CEEEE
Q 003459 224 GPETSGVRCLTFNPDGRTLLCGLHE-SLKVF 253 (818)
Q Consensus 224 ~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vw 253 (818)
......|..+.|+|.=+.|++|+.+ +++||
T Consensus 454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 8888889999999986666666544 57776
No 121
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=7.1e-22 Score=222.22 Aligned_cols=231 Identities=24% Similarity=0.485 Sum_probs=192.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCC---CceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---PNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~---~~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~t~~~ 93 (818)
.+..|+|+.-..++|||++..|.|.+||+.. .+.+..|..|...++++.|++. -.+|++|++||.|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 3456778766788999999999999999977 6667788899999999999885 46899999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEeCC-CCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 94 VRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 94 v~~l~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
..++.+....|..+.|+|. +.+|+++...|.+++||++.. ++...+.+|.++|.|+.|+|++.|||+||.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 9999998899999999994 568999999999999999864 56778889999999999999999999999999999999
Q ss_pred CCCCe--EEEEEecCCCCEEEEEEeCCC-CEEEEEe--CCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEeCC-CCEEEE
Q 003459 172 LTAGK--LLHDFKCHEGQIQCIDFHPHE-FLLATGS--ADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPD-GRTLLC 244 (818)
Q Consensus 172 l~t~~--~i~~~~~h~~~I~sv~fspdg-~~Lasgs--~Dg~I~IwDl~t-~~~i~~~~~~~~~I~sl~fspd-g~~Las 244 (818)
..+++ .+.++. ...++.++.|-|.. ..||+++ .|-.|+|||++- .-+...+..|...++.++|... -..+.+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 98654 344444 35789999999974 4566665 477899999975 3456678888888999999762 334445
Q ss_pred EECCC
Q 003459 245 GLHES 249 (818)
Q Consensus 245 gs~d~ 249 (818)
++.|+
T Consensus 328 ~sKD~ 332 (839)
T KOG0269|consen 328 CSKDG 332 (839)
T ss_pred ecCcc
Confidence 55554
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=201.14 Aligned_cols=237 Identities=20% Similarity=0.380 Sum_probs=203.1
Q ss_pred EeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC
Q 003459 35 GGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114 (818)
Q Consensus 35 gs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~ 114 (818)
-.....|.+|.+.+........--.++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|...|+|+.|+-||.
T Consensus 57 q~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs 136 (476)
T KOG0646|consen 57 QLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGS 136 (476)
T ss_pred cccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCc
Confidence 34445788999876655554444578899999999999999998999999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEECC---------CCeEEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEec
Q 003459 115 FFASGSLDTNLKIWDIR---------KKGCIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183 (818)
Q Consensus 115 ~Lasgs~Dg~I~IwDl~---------~~~~i~~l~~h~~~V~~l~fspd--g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~ 183 (818)
+|++|+.||.|.+|++- +-++++.+..|.-+|+.+...+. ..+|++++.|.++++||+..|.++..+.
T Consensus 137 ~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~- 215 (476)
T KOG0646|consen 137 HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT- 215 (476)
T ss_pred EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-
Confidence 99999999999999763 34678889999999999988764 3589999999999999999999998887
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC----------------eEEEEeCCCCC--CeeEEEEeCCCCEEEEE
Q 003459 184 HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF----------------ELIGSAGPETS--GVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 184 h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~----------------~~i~~~~~~~~--~I~sl~fspdg~~Lasg 245 (818)
....+.+++..|-+..+++|+.+|.|.+.++.+. ..+..+.+|.+ .|+|++++-||..|++|
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSG 295 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSG 295 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEee
Confidence 5788999999999999999999999999887542 24455677777 99999999999999999
Q ss_pred ECC-CEEEEEecCCceecccccccccee
Q 003459 246 LHE-SLKVFSWEPIRCHDAVDVGWSRLS 272 (818)
Q Consensus 246 s~d-~I~Vwd~~~~~~~~~~~~~~~~v~ 272 (818)
+.+ .+.|||....+|.+.+....++++
T Consensus 296 d~dg~VcvWdi~S~Q~iRtl~~~kgpVt 323 (476)
T KOG0646|consen 296 DEDGKVCVWDIYSKQCIRTLQTSKGPVT 323 (476)
T ss_pred CCCCCEEEEecchHHHHHHHhhhccccc
Confidence 877 599999999999887764444443
No 123
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.86 E-value=1.6e-20 Score=196.80 Aligned_cols=242 Identities=25% Similarity=0.507 Sum_probs=191.6
Q ss_pred EEecCCCCEEEEEEeeC-CCcEEEEEeCCCeEEEEECC----------------CCceEEEecCCCCCeEEEEEcCCC-C
Q 003459 11 EFVAHSSTVNCLKIGRK-SSRVLVTGGEDHKVNLWAIG----------------KPNAILSLSGHTSGIDSVSFDSSE-V 72 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~-~~~lLatgs~Dg~V~lWdl~----------------~~~~i~~l~~h~~~V~~l~fspdg-~ 72 (818)
...+|.+.|+.+.-.+- +..+.++-++.|.|+||++. ..+.+.++.+|...=++++|+|-. .
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 34568888888887775 35567777899999999973 235678889999999999999932 2
Q ss_pred EEEEEECCCeEEEEECCCCeEE---EEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCC---eEEEEEecCCCC
Q 003459 73 LVAAGAASGTIKLWDLEEAKIV---RTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKK---GCIHTYKGHTRG 145 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v---~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~---~~i~~l~~h~~~ 145 (818)
.|++|..-+.|++|...+|.-. ..|.+|...|-.++|+|..+ .|++|+.||+|+|||++.+ .++.+ +.|.+.
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc
Confidence 4778888889999998887533 34668999999999999765 7999999999999999987 44544 889999
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEecCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCe---
Q 003459 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTA---GKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFE--- 218 (818)
Q Consensus 146 V~~l~fspdg~~L~sgs~Dg~I~IwDl~t---~~~i~~~~~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~--- 218 (818)
|+.|.|+.+..+|++|+.||+++|||+++ ++++..|+.|..+|+++.|+|. ...|++++.|.+|.+||+.--.
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~e 384 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEE 384 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChh
Confidence 99999999888999999999999999985 6788999999999999999997 4678888999999999985211
Q ss_pred ----------------EEEEeCCCCCCeeEEEEeCCC-CEEEEEECCCEEEEE
Q 003459 219 ----------------LIGSAGPETSGVRCLTFNPDG-RTLLCGLHESLKVFS 254 (818)
Q Consensus 219 ----------------~i~~~~~~~~~I~sl~fspdg-~~Lasgs~d~I~Vwd 254 (818)
++..-+ ....+..+.|+++- -+|++.+.+++.||-
T Consensus 385 e~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 385 EIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccceeEEE
Confidence 111111 13346778888863 355555566777764
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=3.6e-21 Score=206.89 Aligned_cols=236 Identities=19% Similarity=0.385 Sum_probs=205.2
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE--EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI--LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i--~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~ 93 (818)
.+-|.++.+.| +++.|++|++-.++.|||+...... ..+....-..++++.+||.+..++++.||.|.|||+.+...
T Consensus 465 dnyiRSckL~p-dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 465 DNYIRSCKLLP-DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred ccceeeeEecC-CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee
Confidence 45688889999 6778999999999999999765443 33444445677889999999999999999999999999999
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (818)
Q Consensus 94 v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~ 173 (818)
++.|++|.+.+.||..+++|..|.+|+.|.+|+.||+++++.+.... ....|.++.++|.+.||++|-..+.+.+....
T Consensus 544 VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s 622 (705)
T KOG0639|consen 544 VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS 622 (705)
T ss_pred eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC
Confidence 99999999999999999999999999999999999999988776654 46789999999999999999999999988865
Q ss_pred CCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEE
Q 003459 174 AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKV 252 (818)
Q Consensus 174 t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~V 252 (818)
+...+.+..|++.|.++.|.+.|+++++.+.|..+..|.+.-|..+.... ....|.++.++.|.+||++|+.+ ...|
T Consensus 623 -kp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 623 -KPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred -CccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEE
Confidence 44455566799999999999999999999999999999999888877664 46789999999999999999887 5777
Q ss_pred EEe
Q 003459 253 FSW 255 (818)
Q Consensus 253 wd~ 255 (818)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 754
No 125
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3.2e-21 Score=216.98 Aligned_cols=280 Identities=21% Similarity=0.391 Sum_probs=214.5
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC----CceEEEecCC---CCCeEEEEEcC-CCCEEEEEECCCeEEEEEC
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----PNAILSLSGH---TSGIDSVSFDS-SEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~----~~~i~~l~~h---~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl 88 (818)
...++|...++..+ ++.++. ..+.||.+.. ..+...+..- ...+..+.|.. +.++||+++..|.|.+||+
T Consensus 40 ~~~nAIs~nr~~~q-iv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 40 AKANAISVNRDINQ-IVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cccceEeecCCcce-eEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 34556677774444 444443 4577777632 2233332221 12355678864 6789999999999999999
Q ss_pred CC---CeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEEEC
Q 003459 89 EE---AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGE 163 (818)
Q Consensus 89 ~t---~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~ 163 (818)
.. .+.+..|..|...+.+++|++... +|++|+.||+|++||++..+...++.+....|+.+.|+| .+..|+++.+
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 87 667778899999999999998764 799999999999999999999999998888999999999 6789999999
Q ss_pred CCeEEEEECCCC-eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE--EEEeCCCCCCeeEEEEeCCCC
Q 003459 164 DNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGR 240 (818)
Q Consensus 164 Dg~I~IwDl~t~-~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~--i~~~~~~~~~I~sl~fspdg~ 240 (818)
.|.+.+||+|.. ++...+..|.++|.|+.|+|++.+||+|+.|+.|+|||+.+.+. +.++. ...+|.++.|-|+..
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARS 276 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCcc
Confidence 999999999975 45677888999999999999999999999999999999986443 33333 246799999999877
Q ss_pred EEE-EEE---CCCEEEEEec-CCceeccccccccceeeeeecC--CCEEEEEEcCCeEEEEEecCC
Q 003459 241 TLL-CGL---HESLKVFSWE-PIRCHDAVDVGWSRLSDLNVHE--GKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 241 ~La-sgs---~d~I~Vwd~~-~~~~~~~~~~~~~~v~~l~~~~--g~lLatg~~Dg~V~IWdvd~~ 299 (818)
+.+ +++ +-.|+|||+. +.-...++..+...++.+.+.. ...|.+++.||.|..-.++..
T Consensus 277 ~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 277 YHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred chhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence 654 332 2369999986 3444566666777777777644 567788888988765544443
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.86 E-value=1.9e-20 Score=200.83 Aligned_cols=241 Identities=24% Similarity=0.440 Sum_probs=192.4
Q ss_pred CCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCe----------EEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCc
Q 003459 57 GHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEEAK----------IVRTLTGHRSNCISVDFHPFGE-FFASGSLDTN 124 (818)
Q Consensus 57 ~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~t~~----------~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~ 124 (818)
.|.+.|+.+.+.|+. ..|++++..+.|.|||..... +-..+.+|...-++++|++... ++++++.|+.
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 488899999998865 467777889999999975421 2236788998889999998765 7999999999
Q ss_pred EEEEECCCCe-------EEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC--CCeEEEEEecCCCCEEEEEEe
Q 003459 125 LKIWDIRKKG-------CIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLT--AGKLLHDFKCHEGQIQCIDFH 194 (818)
Q Consensus 125 I~IwDl~~~~-------~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~--t~~~i~~~~~h~~~I~sv~fs 194 (818)
|++||+.... ....+.+|...|..++|++ +...|++++.|+.+.|||+| +.+.......|.+.|+|++|+
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeC
Confidence 9999997432 3566789999999999999 56788999999999999999 566777788899999999999
Q ss_pred CC-CCEEEEEeCCCeEEEEECCCC-eEEEEeCCCCCCeeEEEEeCCCC-EEEEE-ECCCEEEEEecCCceec--------
Q 003459 195 PH-EFLLATGSADRTVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGR-TLLCG-LHESLKVFSWEPIRCHD-------- 262 (818)
Q Consensus 195 pd-g~~Lasgs~Dg~I~IwDl~t~-~~i~~~~~~~~~I~sl~fspdg~-~Lasg-s~d~I~Vwd~~~~~~~~-------- 262 (818)
|. +.+||+|+.|++|.+||+++. +++..+.+|...|.++.|+|+.. .|+++ .++.+.|||+......+
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dg 361 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDG 361 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccC
Confidence 95 778999999999999999985 46888999999999999999754 55544 44579999987532221
Q ss_pred ------cccccccceeeeee-c-CCCEEEEEEcCCeEEEEEec
Q 003459 263 ------AVDVGWSRLSDLNV-H-EGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 263 ------~~~~~~~~v~~l~~-~-~g~lLatg~~Dg~V~IWdvd 297 (818)
.-..+...+.++.+ + +--.+++..+|+.+.||.+.
T Consensus 362 ppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 362 PPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 22334445666655 2 33567788999999999875
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=7.2e-20 Score=188.15 Aligned_cols=229 Identities=23% Similarity=0.362 Sum_probs=193.5
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (818)
..|..++.+++|.+ ...+++|+.||.|+.+|+.+++... +..|..+|.||.+.+....+++|+.|++|++||.+...
T Consensus 51 ~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 51 FKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred eecCCceeeeeccC--CceEEEeccCceEEEEEecCCccee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 35899999999986 3458999999999999998877654 45599999999999988899999999999999998766
Q ss_pred EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (818)
Q Consensus 93 ~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~--~h~~~V~~l~fspdg~~L~sgs~Dg~I~Iw 170 (818)
....+. ....|.++... |+.|++|+.|..|.+||+++.....+.. ..+-.++|+++-|++.-+++++-||+|.+=
T Consensus 128 ~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 128 VVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred cccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 666665 33478888775 8899999999999999999876544322 234578999999988889999999999887
Q ss_pred ECCCC----eEEEEEecCCC---------CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003459 171 DLTAG----KLLHDFKCHEG---------QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (818)
Q Consensus 171 Dl~t~----~~i~~~~~h~~---------~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fsp 237 (818)
.+... +.-..|++|.. +|++|+|||-...||+|+.||.|.+||+.+.+.+..+......|..++|+.
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~ 284 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM 284 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc
Confidence 76655 45566777752 689999999988999999999999999999999998888878899999999
Q ss_pred CCCEEEEEEC
Q 003459 238 DGRTLLCGLH 247 (818)
Q Consensus 238 dg~~Lasgs~ 247 (818)
||..||+++.
T Consensus 285 dG~~LAia~s 294 (323)
T KOG1036|consen 285 DGSLLAIASS 294 (323)
T ss_pred CCCeEEEEec
Confidence 9999998864
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=3.1e-19 Score=192.67 Aligned_cols=282 Identities=19% Similarity=0.316 Sum_probs=218.3
Q ss_pred EecCC-CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003459 12 FVAHS-STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 12 ~~~H~-~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (818)
|..+. .-|.|++|.++ +. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+|- |+.|..|..||-.-
T Consensus 241 fek~ekk~Vl~v~F~en-gd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y 317 (626)
T KOG2106|consen 241 FEKREKKFVLCVTFLEN-GD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNY 317 (626)
T ss_pred cccccceEEEEEEEcCC-CC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccc
Confidence 44433 46999999994 44 89999999999999988887777779999999999999998774 99999999998310
Q ss_pred Ce-----------E-----------------------------EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEEC
Q 003459 91 AK-----------I-----------------------------VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (818)
Q Consensus 91 ~~-----------~-----------------------------v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 130 (818)
.+ . .....+|....+.++.+|+.+.+++++.|+.+++|+
T Consensus 318 ~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~- 396 (626)
T KOG2106|consen 318 RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN- 396 (626)
T ss_pred cccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-
Confidence 00 0 011246888889999999999999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003459 131 RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (818)
Q Consensus 131 ~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~ 210 (818)
..+++.+.. -..++.|+.|+|.| .++.|+..|...+.|..+...+..-.. ..+++++.|+|+|.+||.|+.|+.|+
T Consensus 397 -~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 397 -DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred -CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEE
Confidence 555555544 45779999999999 999999999999999999766666655 88999999999999999999999999
Q ss_pred EEECCCC-eEEEEe-CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceecc---ccccccceee-----------
Q 003459 211 FWDLETF-ELIGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA---VDVGWSRLSD----------- 273 (818)
Q Consensus 211 IwDl~t~-~~i~~~-~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~---~~~~~~~v~~----------- 273 (818)
||-+... ...... ..+..+|+.+.|++|+++|.+-+.| .|-.| .+..|.+. -++.|....+
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW--~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~ 550 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYW--KPSECKQITSVKDVKWATYTCTLGFEVFGGSD 550 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEE--ccccCcccceecceeeeeeEEEEEEEEecccC
Confidence 9988653 333222 2334889999999999999987666 35555 55544332 2333332211
Q ss_pred -------eeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 274 -------LNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 274 -------l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
...++.+++++|.+.|.|++|...-.....
T Consensus 551 ~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA 587 (626)
T KOG2106|consen 551 GTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRA 587 (626)
T ss_pred CchHHHhhhhhhhhhhhccccCceEEEEccccCCCcc
Confidence 123568999999999999999776655443
No 129
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=7.1e-20 Score=196.07 Aligned_cols=291 Identities=18% Similarity=0.263 Sum_probs=216.8
Q ss_pred eEEEEecCCCCEEEEEEeeCCC-cEEEEEeCCCeEEEEECCC----CceEEEecCCCCCeEEEEEcCC-CCEEEEEECCC
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSS-RVLVTGGEDHKVNLWAIGK----PNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASG 81 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~-~lLatgs~Dg~V~lWdl~~----~~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG 81 (818)
.....+-|.+.|++++|+|... .++++|+.-|.|-+||+.+ ...+..+..|..+|.++.|+|. -..+++.++||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 4456678999999999999655 7899999999999999942 2345677889999999999994 46888999999
Q ss_pred eEEEEECCCCeEE--EEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCeEEEEEcCC-CCE
Q 003459 82 TIKLWDLEEAKIV--RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVNAIRFTPD-GRW 157 (818)
Q Consensus 82 ~I~IWDl~t~~~v--~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~-i~~l~~h~~~V~~l~fspd-g~~ 157 (818)
+|++-|++.+..- ..+......+..+.|+.+...++++..-|...+||.++++. ...+.-|...|..++++|. ..+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 9999999876433 33333455677888988888888888888999999998765 6667778889999999994 557
Q ss_pred EEEEECCCeEEEEECCCC--eE--EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC----CCeEEEEeCCC---
Q 003459 158 VVSGGEDNTVKLWDLTAG--KL--LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE----TFELIGSAGPE--- 226 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~--~~--i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~----t~~~i~~~~~~--- 226 (818)
|++++.|++.+|||++.- +. +.....|...|.+..|+|.+-.|++.+.|..|+|||.. ...+...+...
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t 417 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRT 417 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcc
Confidence 899999999999999862 21 22223489999999999997779999999999999983 33333333221
Q ss_pred CCC--eeEEEEeCCCCEEEEEECC-CEEEEEecCCceecccccc-ccceeeee-ec-CCC-EEEEEEcCCeEEEEEecC
Q 003459 227 TSG--VRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG-WSRLSDLN-VH-EGK-LLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 227 ~~~--I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~-~~~v~~l~-~~-~g~-lLatg~~Dg~V~IWdvd~ 298 (818)
..+ .....|.|+..++++|..- .|-||+-+.++....+... ...+..+. +| -+. +++.+...|.|+||.-+.
T Consensus 418 ~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 418 GRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 112 2345799999999998654 5999998877743332111 11222222 23 344 566667788999986543
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=207.05 Aligned_cols=242 Identities=20% Similarity=0.314 Sum_probs=201.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 003459 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA-KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG 134 (818)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~-~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~ 134 (818)
.+|+...+.|+|.++|.+|++++.||.|++|+.... ..-.++..+...|.+++.. +.+|++|+.+++|.+|.+..++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 368889999999999999999999999999997655 3334444466777777654 5699999999999999998887
Q ss_pred EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 003459 135 CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 135 ~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
.-..+....-++++++|+.+|++++.|+.|-.|++.++.+......+++|.++|.++.|+|++.+||+.+.||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 65555556688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCC--------CCCeeEEEEeCC-CCEEEEEECCCEEEEEecCCceeccccc--cccceeeeee-cCCCEE
Q 003459 215 ETFELIGSAGPE--------TSGVRCLTFNPD-GRTLLCGLHESLKVFSWEPIRCHDAVDV--GWSRLSDLNV-HEGKLL 282 (818)
Q Consensus 215 ~t~~~i~~~~~~--------~~~I~sl~fspd-g~~Lasgs~d~I~Vwd~~~~~~~~~~~~--~~~~v~~l~~-~~g~lL 282 (818)
+++.+...+..- ...+..++|+|+ |.+++.+.++.+++|+-+.......+.. ..+.+.++.+ ++|++|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 998776654321 334577899999 6677778888999998877766554422 2233555554 889999
Q ss_pred EEEEcCCeEEEEEecCC
Q 003459 283 GCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 283 atg~~Dg~V~IWdvd~~ 299 (818)
|+++.||.|.|||+++.
T Consensus 248 AAs~~~g~I~vWnv~t~ 264 (933)
T KOG1274|consen 248 AASTLDGQILVWNVDTH 264 (933)
T ss_pred eeeccCCcEEEEecccc
Confidence 99999999999999963
No 131
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=2.4e-19 Score=183.51 Aligned_cols=240 Identities=19% Similarity=0.346 Sum_probs=187.4
Q ss_pred CCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CeEE-EEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 003459 57 GHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEE-AKIV-RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133 (818)
Q Consensus 57 ~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t-~~~v-~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~ 133 (818)
...+.|.+|+|+| ...++++|+.||+|++|+++. |..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4567899999999 556777999999999999987 3333 344568999999999999999999999999999999998
Q ss_pred eEEEEEecCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003459 134 GCIHTYKGHTRGVNAIRFTPDGR--WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211 (818)
Q Consensus 134 ~~i~~l~~h~~~V~~l~fspdg~--~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~I 211 (818)
.+..+..|.++|.++.|-+... .|++|+.|.+|+.||.+...++.++. -...++++..- ..+++.+..++.|.+
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 4666778999999999988655 89999999999999999999999887 45677777653 347888889999999
Q ss_pred EECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC--------ceecccccccc---ceeeeee-
Q 003459 212 WDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI--------RCHDAVDVGWS---RLSDLNV- 276 (818)
Q Consensus 212 wDl~t~~~i~~--~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~--------~~~~~~~~~~~---~v~~l~~- 276 (818)
|+++++..... ..+....++|++...|....+.|+-+ .+.|..++.. +|+..-...-. .+..+.+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 99987643322 22345568999998887777777655 5777777764 45543221111 2333444
Q ss_pred cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 277 HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 277 ~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
+....|++.+.||+..+||-+...
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar~ 284 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDART 284 (347)
T ss_pred cccceEEEecCCceEEEecchhhh
Confidence 456889999999999999988765
No 132
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=2.4e-18 Score=185.90 Aligned_cols=286 Identities=20% Similarity=0.348 Sum_probs=226.5
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE---ecC-CCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS---LSG-HTSGIDSVSFDSSEVLVAAGAASGT 82 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~---l~~-h~~~V~~l~fspdg~~Lasgs~DG~ 82 (818)
.++...+.-+..|..+.|+|.+.+++++++. |.+.+|+...+..... +.. ....|.|++|.++|.. ++|..+|.
T Consensus 191 ~~~~~vk~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~ 268 (626)
T KOG2106|consen 191 AKLGPVKTSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGN 268 (626)
T ss_pred hccCcceeccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCce
Confidence 3444556667788999999998888888876 7899999987765543 222 2367999999999974 59999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-----------eEE---------------
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-----------GCI--------------- 136 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-----------~~i--------------- 136 (818)
|.||+..+.+..+....|.+.|.+++...+|.+|- |+.|..|..||-.-. ..+
T Consensus 269 i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTt 347 (626)
T KOG2106|consen 269 ILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTT 347 (626)
T ss_pred EEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeec
Confidence 99999998888888779999999999999886555 999999999983210 001
Q ss_pred --------------EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEE
Q 003459 137 --------------HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLAT 202 (818)
Q Consensus 137 --------------~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Las 202 (818)
....+|......++.+|+.+.+++++.|+.+++|+ ..+++.+.. ...++.|+.|+|.| .+|.
T Consensus 348 rN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~ 423 (626)
T KOG2106|consen 348 RNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAV 423 (626)
T ss_pred cceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEE
Confidence 11236778888999999999999999999999999 566666655 46788999999999 9999
Q ss_pred EeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCce-ec-cccccccceeeeee-cC
Q 003459 203 GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC-HD-AVDVGWSRLSDLNV-HE 278 (818)
Q Consensus 203 gs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~-~~-~~~~~~~~v~~l~~-~~ 278 (818)
|+..|...+.|.++...+..-. ...++.++.|+|+|.+||+|+.| .|.||-++.... .. .-....+++..+.+ .|
T Consensus 424 Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~D 502 (626)
T KOG2106|consen 424 GTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSD 502 (626)
T ss_pred eeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCC
Confidence 9999999999999966555444 48899999999999999999887 589998875432 22 12233366777765 78
Q ss_pred CCEEEEEEcCCeEEEEEecCCC
Q 003459 279 GKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 279 g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
+++|.+-+.|-.|-.|......
T Consensus 503 s~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 503 SQFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred CceEEeccCceEEEEEccccCc
Confidence 9999999999999999444433
No 133
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=3e-18 Score=194.51 Aligned_cols=284 Identities=18% Similarity=0.310 Sum_probs=221.9
Q ss_pred EEEEEEeeC-CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 19 VNCLKIGRK-SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 19 V~~lafsp~-~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (818)
|+++. +|. --+-++.|+.+|.+.+|++.+++.++++.++...|+++.=+|--..++.|..+|+|.++++..++.+.+|
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 77764 442 2234889999999999999999999999999999999999998899999999999999999999999999
Q ss_pred cCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003459 98 TGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (818)
Q Consensus 98 ~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~-~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (818)
+...+.|+.+.|.-||. .+++|+..|.+.+||++..+.+.... .|.+.|....|.|....+++++.|..+++|=..++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 95569999999999997 57777778999999999877665554 56566666666666566666666655544422100
Q ss_pred ------------------------------------------------------e---------------------EE--
Q 003459 176 ------------------------------------------------------K---------------------LL-- 178 (818)
Q Consensus 176 ------------------------------------------------------~---------------------~i-- 178 (818)
. .+
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 0 00
Q ss_pred ------------------------E------------EEe-----cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 003459 179 ------------------------H------------DFK-----CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF 217 (818)
Q Consensus 179 ------------------------~------------~~~-----~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~ 217 (818)
. .+. .....+++++.++.|++.+.|+..|.|.+|++++|
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 0 000 01145788899999999999999999999999999
Q ss_pred eEEEEe---CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceec-------------------------------
Q 003459 218 ELIGSA---GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD------------------------------- 262 (818)
Q Consensus 218 ~~i~~~---~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~------------------------------- 262 (818)
-....+ ..|..+|++++...-++.+++++.+ -+++|++.......
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRV 560 (910)
T ss_pred eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEE
Confidence 988888 4889999999999888888876655 48999987653110
Q ss_pred ----------cccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 263 ----------AVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 263 ----------~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
.+..+...+.++.+ ++|++|++++.|++|++||+.++....
T Consensus 561 vD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 561 VDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLID 612 (910)
T ss_pred EEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceee
Confidence 12334566777775 899999999999999999999988654
No 134
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=1.1e-19 Score=201.87 Aligned_cols=243 Identities=21% Similarity=0.331 Sum_probs=209.4
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS---SEVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fsp---dg~~Lasgs~DG~I~IWDl~t 90 (818)
+....|.|++.+| ++++||+|..-|+++||++..-+....+..|...|.|+.|+. ..++||+++.|..|++||+..
T Consensus 457 d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 457 DSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred CcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 4456799999999 778899999999999999999999999999999999999975 357999999999999999864
Q ss_pred -CeEEEEEcCCCCCeEEEEEeCCC--CEEEEEECCCcEEEEECCCCeEEEEEecC-----CCCeEEEEEcCCCCEEEEEE
Q 003459 91 -AKIVRTLTGHRSNCISVDFHPFG--EFFASGSLDTNLKIWDIRKKGCIHTYKGH-----TRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 91 -~~~v~~l~~h~~~V~sv~fspdg--~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h-----~~~V~~l~fspdg~~L~sgs 162 (818)
..+++++.+|...|+++.|-..| ..+++++.|..|.+--.+...-...+..| ...++.++..|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 46788999999999999998877 57889999988765433322112222222 34688999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEec---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003459 163 EDNTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~---h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg 239 (818)
.|..|+|||+..|+..+.|++ |++....+...|.|.||++.+.|.++.|||.-+++++..+.+|...|+.+.|.+|.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDC 695 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccc
Confidence 999999999999999999985 66788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECC-CEEEEEecC
Q 003459 240 RTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 240 ~~Lasgs~d-~I~Vwd~~~ 257 (818)
+.|++.+.| .|-||.+..
T Consensus 696 kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhheeecCCceEEEEECch
Confidence 999976655 588888764
No 135
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=4.3e-20 Score=192.66 Aligned_cols=244 Identities=19% Similarity=0.349 Sum_probs=203.3
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
.+..|++|.+.|..+++.. ..+++++.|.+|+.|.+.- ..+.++.+ ...+..+.-+..+..+++++. .|.|||
T Consensus 101 ~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD 173 (433)
T KOG0268|consen 101 CIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWD 173 (433)
T ss_pred hhheeecccCceeeEEecc---cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeecc
Confidence 4568999999999999975 4588999999999999864 36666654 456777777777778888764 599999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
.+...++..+.-....|.++.|+|... .|++|..|+.|.+||+++..+++.+.. .-.-+.|+|+|.+-.+++|.+|..
T Consensus 174 ~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~n 252 (433)
T KOG0268|consen 174 EQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHN 252 (433)
T ss_pred cccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecccccc
Confidence 999999999998888899999999775 567777999999999999998877652 344678999998888999999999
Q ss_pred EEEEECCC-CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC-CCCCCeeEEEEeCCCCEEEE
Q 003459 167 VKLWDLTA-GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-PETSGVRCLTFNPDGRTLLC 244 (818)
Q Consensus 167 I~IwDl~t-~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~-~~~~~I~sl~fspdg~~Las 244 (818)
++.||++. ..++..+.+|.+.|..++|+|.|.-+++|+.|.+|+||..+.+.--..+. .....|.|+.|+.|.+|+++
T Consensus 253 lY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~S 332 (433)
T KOG0268|consen 253 LYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIIS 332 (433)
T ss_pred ceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEe
Confidence 99999986 35677888999999999999999999999999999999998776443332 12345899999999999999
Q ss_pred EECC-CEEEEEecCCc
Q 003459 245 GLHE-SLKVFSWEPIR 259 (818)
Q Consensus 245 gs~d-~I~Vwd~~~~~ 259 (818)
|+++ .+++|.-...+
T Consensus 333 GSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 333 GSDDGNVRLWKAKASE 348 (433)
T ss_pred cCCCcceeeeecchhh
Confidence 9988 59999866443
No 136
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.83 E-value=4.2e-19 Score=180.78 Aligned_cols=204 Identities=26% Similarity=0.460 Sum_probs=167.7
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe----------EEE-----EEcCCCCCeEEEEEeCC-CCEEEE
Q 003459 56 SGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAK----------IVR-----TLTGHRSNCISVDFHPF-GEFFAS 118 (818)
Q Consensus 56 ~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~~----------~v~-----~l~~h~~~V~sv~fspd-g~~Las 118 (818)
..|.+.|+.+...+ .|+|+++|+.||.|.+||++... .+. .-.+|+-.|..+.|-|. ...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999977 68999999999999999997543 111 12368889999999984 458899
Q ss_pred EECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeC
Q 003459 119 GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD---GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP 195 (818)
Q Consensus 119 gs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd---g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fsp 195 (818)
++.|.++++||..+.+....|+ ..+.|++-+++|- .-++++|..|-.|++.|+..|..-+.+.+|.+.|.++.|+|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred ccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999999988888887 4567888899882 34677777888999999999999999999999999999999
Q ss_pred C-CCEEEEEeCCCeEEEEECCCC-eEEEE--------------eCCCCCCeeEEEEeCCCCEEEE-EECCCEEEEEecCC
Q 003459 196 H-EFLLATGSADRTVKFWDLETF-ELIGS--------------AGPETSGVRCLTFNPDGRTLLC-GLHESLKVFSWEPI 258 (818)
Q Consensus 196 d-g~~Lasgs~Dg~I~IwDl~t~-~~i~~--------------~~~~~~~I~sl~fspdg~~Las-gs~d~I~Vwd~~~~ 258 (818)
. +..|++|+.||.|++||++.. .+... -..|.+.+.+++|+.||.++++ |.++.+++|+...+
T Consensus 199 ~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 199 SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 7 557899999999999999853 22222 2345678999999999999984 56778999998876
Q ss_pred ce
Q 003459 259 RC 260 (818)
Q Consensus 259 ~~ 260 (818)
+.
T Consensus 279 ~n 280 (397)
T KOG4283|consen 279 RN 280 (397)
T ss_pred cc
Confidence 43
No 137
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.4e-19 Score=180.41 Aligned_cols=244 Identities=19% Similarity=0.317 Sum_probs=193.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEcCCCCCeEEEEEeC--CCCEEEEEECCCcEEEEEC
Q 003459 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---KIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDI 130 (818)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~---~~v~~l~~h~~~V~sv~fsp--dg~~Lasgs~Dg~I~IwDl 130 (818)
..|.+.|..+..+-.|+.|++++.|++|+|+.++.. +.+.++.+|.++|+.++|-. .|.+||+++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 468888999988889999999999999999999764 56888999999999999966 8999999999999999998
Q ss_pred CCCeE--EEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCEEEEEEeCC---C---
Q 003459 131 RKKGC--IHTYKGHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDFHPH---E--- 197 (818)
Q Consensus 131 ~~~~~--i~~l~~h~~~V~~l~fsp--dg~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~I~sv~fspd---g--- 197 (818)
.+++. ...+..|...|++++|-| .|-.|++++.||.|.|++.+.. .......+|.-.|++++|.|- |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 87753 445668999999999988 5678999999999999998764 223345579999999999995 4
Q ss_pred --------CEEEEEeCCCeEEEEECCCCe--EEEEeCCCCCCeeEEEEeCCC----CEEEEEECC-CEEEEEecCCcee-
Q 003459 198 --------FLLATGSADRTVKFWDLETFE--LIGSAGPETSGVRCLTFNPDG----RTLLCGLHE-SLKVFSWEPIRCH- 261 (818)
Q Consensus 198 --------~~Lasgs~Dg~I~IwDl~t~~--~i~~~~~~~~~I~sl~fspdg----~~Lasgs~d-~I~Vwd~~~~~~~- 261 (818)
+.|++|+.|..|+||+..+++ .-..+..|...|+.++|.|.- .+|++++.| .+.||--+.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 579999999999999998753 344588999999999999963 578888777 5888866522111
Q ss_pred -cc-ccccccceeeee-ecCCCEEEEEEcCCeEEEEEecCC
Q 003459 262 -DA-VDVGWSRLSDLN-VHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 262 -~~-~~~~~~~v~~l~-~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
.. +..--..+..+. ...|.+|++++.|+.|.+|.-+..
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence 11 111111122222 367999999999999999976554
No 138
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.1e-18 Score=179.08 Aligned_cols=242 Identities=19% Similarity=0.318 Sum_probs=191.5
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEE
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLW 86 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~----~~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IW 86 (818)
.+|.+-|.|+.|.+ .|+.+|+|+.|++|+|||..+. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||
T Consensus 10 s~h~DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 47899999999999 7788999999999999997433 45556778999999999954 58999999999999999
Q ss_pred ECC---------CCeEEEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCCe------EEEEEe-------cC
Q 003459 87 DLE---------EAKIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKG------CIHTYK-------GH 142 (818)
Q Consensus 87 Dl~---------t~~~v~~l~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~~------~i~~l~-------~h 142 (818)
.-. ......++......|+.+.|.|. |-.+++++.||.|+||+.-.-- ....++ .+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 742 12344566677889999999995 5589999999999999865432 222222 35
Q ss_pred CCCeEEEEEcC---CCCEEEEEECC-----CeEEEEECCCC----eEEEEEecCCCCEEEEEEeCC----CCEEEEEeCC
Q 003459 143 TRGVNAIRFTP---DGRWVVSGGED-----NTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPH----EFLLATGSAD 206 (818)
Q Consensus 143 ~~~V~~l~fsp---dg~~L~sgs~D-----g~I~IwDl~t~----~~i~~~~~h~~~I~sv~fspd----g~~Lasgs~D 206 (818)
..+..|+.|+| ...+|++|+.+ +.++||....+ ..+.++.+|..+|+.++|.|+ -.+||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 66788999997 34578888765 47888876543 345567789999999999997 3589999999
Q ss_pred CeEEEEECCC--------------------CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003459 207 RTVKFWDLET--------------------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (818)
Q Consensus 207 g~I~IwDl~t--------------------~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (818)
| |+||.+.. -+.+..+..|.+.|..+.|+-.|..|++.++| .+++|...
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 9 99999873 13456678899999999999999999976666 59998653
No 139
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=3.7e-17 Score=178.91 Aligned_cols=288 Identities=30% Similarity=0.612 Sum_probs=233.3
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-eEEEecCCCC-CeEEEEE-cCCCC-EEEEEEC-CCeEEE
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-AILSLSGHTS-GIDSVSF-DSSEV-LVAAGAA-SGTIKL 85 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~-~i~~l~~h~~-~V~~l~f-spdg~-~Lasgs~-DG~I~I 85 (818)
.+..|...|.++.|.+ .+..++.++.|+.+.+|+...+. .+..+.++.. .+..+.+ .+++. +++..+. |+.+.+
T Consensus 60 ~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 60 LLRGHEDSITSIAFSP-DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eeeeccceEEEEEECC-CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 4678999999999998 66778888899999999998776 6777776443 7787877 78777 5555444 999999
Q ss_pred EECCC-CeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEE
Q 003459 86 WDLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGG 162 (818)
Q Consensus 86 WDl~t-~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~-~L~sgs 162 (818)
||+.. ......+..|...|..++|+|++.++++++. |+.+++|++..+..+..+.+|...|.+++|+|++. .+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99998 8888889999999999999999998888885 99999999999889999999999999999999998 555558
Q ss_pred CCCeEEEEECCCCeEEE-EEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-EEEeCCCCCCeeEEEEeCCCC
Q 003459 163 EDNTVKLWDLTAGKLLH-DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL-IGSAGPETSGVRCLTFNPDGR 240 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~-~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~-i~~~~~~~~~I~sl~fspdg~ 240 (818)
.|+.|++||...+..+. .+.+|.... ...|+|++.++++++.|+.+++||+..... +..+..|...+.++.|.|++.
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 297 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCC
Confidence 99999999999888887 677787775 448999998999999999999999987664 444466788999999999888
Q ss_pred EEEEEECC-CEEEEEecCCceecccc--ccccceeeeeec-CCCEEEEE-EcCCeEEEEEecCCC
Q 003459 241 TLLCGLHE-SLKVFSWEPIRCHDAVD--VGWSRLSDLNVH-EGKLLGCS-YNQSCVGVWVVDISR 300 (818)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~--~~~~~v~~l~~~-~g~lLatg-~~Dg~V~IWdvd~~~ 300 (818)
.+++++.+ .+.+|+........... .+...+..+.+. ++..+..+ ..|+.+.+|++....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 88876555 48999887766554443 333345555542 22455555 688999999999888
No 140
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=5.1e-19 Score=194.26 Aligned_cols=281 Identities=17% Similarity=0.263 Sum_probs=217.6
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC--EEEEEECCCeEEEEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV--LVAAGAASGTIKLWD 87 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~--~Lasgs~DG~I~IWD 87 (818)
..+.+|++.|.|+...| .+.+|++|+.||+|+||.+.++.|+..+. ..+.|.||+|+|.+. .||++- .+.+.|.+
T Consensus 394 lvyrGHtg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~ivn 470 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIVN 470 (733)
T ss_pred eeEeccCCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEeC
Confidence 46889999999999999 88899999999999999999999999887 466899999999765 344433 33344443
Q ss_pred CCCC-------------------------------------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECC---CcEEE
Q 003459 88 LEEA-------------------------------------KIVRTLTGHRSNCISVDFHPFGEFFASGSLD---TNLKI 127 (818)
Q Consensus 88 l~t~-------------------------------------~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D---g~I~I 127 (818)
..-| .-++..-.|...|..+.||..|.||++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2111 0122333478899999999999999998764 47899
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCC
Q 003459 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR 207 (818)
Q Consensus 128 wDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg 207 (818)
+++.......-|.-..+.|.++.|+|...+|++++ ...|+|||+.....++.+......|..++.||.|.-|+.|+.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC
Confidence 99987776666666677899999999988888886 56899999998888777776777899999999999999999999
Q ss_pred eEEEEECCCC-eEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecCC------c---eeccccccc-----cce
Q 003459 208 TVKFWDLETF-ELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEPI------R---CHDAVDVGW-----SRL 271 (818)
Q Consensus 208 ~I~IwDl~t~-~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~------~---~~~~~~~~~-----~~v 271 (818)
.+..||+.-. ++...+..|...+++++|++.-.++++|++|+ +.||.-.-. - .+..+..+. +.+
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVL 709 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVL 709 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceE
Confidence 9999999854 56667888999999999999999999999874 666642111 0 111222222 222
Q ss_pred eeeeecCCCEEEEEEcCCeEEEE
Q 003459 272 SDLNVHEGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 272 ~~l~~~~g~lLatg~~Dg~V~IW 294 (818)
...+.+...+|.+++.||.|++|
T Consensus 710 d~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 710 DTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccCCCceEEecCCCceEEee
Confidence 22233567899999999999999
No 141
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.82 E-value=1.5e-18 Score=193.51 Aligned_cols=296 Identities=18% Similarity=0.326 Sum_probs=228.2
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCC--cEEEEEeCCCeEEEEECCCCc---------------------eEEE-------
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSS--RVLVTGGEDHKVNLWAIGKPN---------------------AILS------- 54 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~--~lLatgs~Dg~V~lWdl~~~~---------------------~i~~------- 54 (818)
+..++.++.||.+.|.+++|...++ .+||+++.|..|+||.+.-+. ....
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 3456778999999999999987544 589999999999999872111 1111
Q ss_pred ---ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEE-----EEcCCCCCeEEEEEeCCCCEEEEEECCCc
Q 003459 55 ---LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK--IVR-----TLTGHRSNCISVDFHPFGEFFASGSLDTN 124 (818)
Q Consensus 55 ---l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~--~v~-----~l~~h~~~V~sv~fspdg~~Lasgs~Dg~ 124 (818)
+.||.+.|.++.|+|.+..|++++.|.++.+|...+.. -+. .+.+.....+...|+|+++.+++-+..|.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 23899999999999999999999999999999876542 221 22234456889999999999999999999
Q ss_pred EEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-------------------------C--
Q 003459 125 LKIWDIRKK---GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT-------------------------A-- 174 (818)
Q Consensus 125 I~IwDl~~~---~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~-------------------------t-- 174 (818)
.++|-.... .....+.+|.+.|..++|+|.|.+|++.+.|.+-++|-.- +
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~ 419 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNED 419 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCC
Confidence 999983321 2334456899999999999999999999988776664311 0
Q ss_pred -----C----------------------------------------------e---------------------------
Q 003459 175 -----G----------------------------------------------K--------------------------- 176 (818)
Q Consensus 175 -----~----------------------------------------------~--------------------------- 176 (818)
| +
T Consensus 420 ~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~ 499 (764)
T KOG1063|consen 420 LQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCE 499 (764)
T ss_pred ceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchh
Confidence 0 0
Q ss_pred -----------------EEEEEecCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003459 177 -----------------LLHDFKCHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFELIGSAGPETSGVRCLT 234 (818)
Q Consensus 177 -----------------~i~~~~~h~~~I~sv~fspdg~~Lasgs~D-----g~I~IwDl~t~~~i~~~~~~~~~I~sl~ 234 (818)
.++.+-+|...|++++.+|+++++|+++.. ..|++|+..++..+..+..|.-.|+.|+
T Consensus 500 L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 500 LTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred ccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence 001123566779999999999999999854 3699999999999999999999999999
Q ss_pred EeCCCCEEEEEECC-CEEEEEecCCce----eccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 235 FNPDGRTLLCGLHE-SLKVFSWEPIRC----HDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 235 fspdg~~Lasgs~d-~I~Vwd~~~~~~----~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
|+|||++|++.+.| ...+|....... +.....+...+.+..+ |+++++++++.|.+|.||...-.+
T Consensus 580 FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~ 651 (764)
T KOG1063|consen 580 FSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLR 651 (764)
T ss_pred ECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCch
Confidence 99999999988766 588887643221 2334555555555553 888999999999999999887775
No 142
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=5.6e-19 Score=195.40 Aligned_cols=281 Identities=17% Similarity=0.283 Sum_probs=199.9
Q ss_pred EEEee--CCCcEEEEEeCCCeEEEEECCCCc------eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 22 LKIGR--KSSRVLVTGGEDHKVNLWAIGKPN------AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 22 lafsp--~~~~lLatgs~Dg~V~lWdl~~~~------~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~ 93 (818)
+.|++ ....+|+.+.+||.|.++|..... .+.....|...|..+.|-|....|++++.|.++++||+.+.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 55654 345689999999999999975432 2355668999999999999778999999999999999999998
Q ss_pred EEE--EcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCe---------------------------EEEEEecCC
Q 003459 94 VRT--LTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKG---------------------------CIHTYKGHT 143 (818)
Q Consensus 94 v~~--l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~---------------------------~i~~l~~h~ 143 (818)
+.. +.+|...+.+++|+|... .|++|+.||.|.|||++-.. .+...+.+.
T Consensus 135 ~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s 214 (720)
T KOG0321|consen 135 VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS 214 (720)
T ss_pred ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccccc
Confidence 877 889999999999999775 68999999999999987432 011122344
Q ss_pred CCeEE---EEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEE--------ecC---CCCEEEEEEeCCCCEEEEEeCCCe
Q 003459 144 RGVNA---IRFTPDGRWVVSGGE-DNTVKLWDLTAGKLLHDF--------KCH---EGQIQCIDFHPHEFLLATGSADRT 208 (818)
Q Consensus 144 ~~V~~---l~fspdg~~L~sgs~-Dg~I~IwDl~t~~~i~~~--------~~h---~~~I~sv~fspdg~~Lasgs~Dg~ 208 (818)
..|.. +.+..|...||+++. |+.|++||++........ ..| ...+.++.....|.+|++.+.|+.
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~s 294 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNS 294 (720)
T ss_pred CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCc
Confidence 44554 555568889999888 999999999976543322 222 234677777777899988888999
Q ss_pred EEEEECCCCe--EEEEeCCCCC--CeeEEEEeCCCCEEEEEECC-CEEEEEecCCcee-ccccccccceeeeee---cCC
Q 003459 209 VKFWDLETFE--LIGSAGPETS--GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH-DAVDVGWSRLSDLNV---HEG 279 (818)
Q Consensus 209 I~IwDl~t~~--~i~~~~~~~~--~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~-~~~~~~~~~v~~l~~---~~g 279 (818)
|++|++.... ++..+.++.. .-..-..+||+.+|++|+.+ ...+|.++.-..- ..+..+.-.+..+.+ +..
T Consensus 295 Iy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t 374 (720)
T KOG0321|consen 295 IYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATT 374 (720)
T ss_pred EEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCC
Confidence 9999998643 2333332211 11223468999999999776 4667766543321 122222223333333 455
Q ss_pred CEEEEEEcCCeEEEEEecCCCcee
Q 003459 280 KLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 280 ~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
+++.| ++|..+.||++..+-...
T Consensus 375 ~v~Tc-SdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 375 PVATC-SDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred Cceee-ccCcceEEEeccCchhhc
Confidence 66666 999999999995544443
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=4.3e-19 Score=189.73 Aligned_cols=240 Identities=23% Similarity=0.405 Sum_probs=186.9
Q ss_pred EEEEEee------CCCcEEEEEeCCCeEEEEECCCC---ceEE------------------EecCCCCCeEEEEEcCC-C
Q 003459 20 NCLKIGR------KSSRVLVTGGEDHKVNLWAIGKP---NAIL------------------SLSGHTSGIDSVSFDSS-E 71 (818)
Q Consensus 20 ~~lafsp------~~~~lLatgs~Dg~V~lWdl~~~---~~i~------------------~l~~h~~~V~~l~fspd-g 71 (818)
.|++|.- .-++++|.|..|..|.|||+.-- .+.. ...+|+..|..+.|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666632 13579999999999999998411 1111 12369999999999875 4
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003459 72 VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (818)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~ 150 (818)
+.||+|+.|.+|++||+.++++..++..|...|.++.|+|.. .+|++|+.|++|.+.|.+........-...+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 689999999999999999999999999999999999999975 5899999999999999995433333333457899999
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeE--EEEeCC
Q 003459 151 FTP-DGRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFEL--IGSAGP 225 (818)
Q Consensus 151 fsp-dg~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~--i~~~~~ 225 (818)
|.| ....++++..||+|+-+|+|.. +++++++.|.+.|.++++++. ..++++++.|+.|++|++..-.. +..-.-
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~ 416 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF 416 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc
Confidence 998 4567888889999999999974 899999999999999999986 56899999999999999875332 222222
Q ss_pred CCCCeeEEEEeCCCCE-EEEEECC-CEEEEEecCCc
Q 003459 226 ETSGVRCLTFNPDGRT-LLCGLHE-SLKVFSWEPIR 259 (818)
Q Consensus 226 ~~~~I~sl~fspdg~~-Lasgs~d-~I~Vwd~~~~~ 259 (818)
.-+...|+++.|+-.+ |+.|+.. .++|||.-+..
T Consensus 417 ~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 417 KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 2234677788887544 4455555 49999987654
No 144
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.82 E-value=3.6e-18 Score=180.95 Aligned_cols=288 Identities=19% Similarity=0.354 Sum_probs=221.0
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---------ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---------NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~---------~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
...+|..+.|.+.+...++||+.|..|++|.+..+ +.+..+..|...|+++.|+|+|.+|++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 34589999999966669999999999999987422 233456789999999999999999999999999999
Q ss_pred EECC--------C--------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEE
Q 003459 86 WDLE--------E--------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149 (818)
Q Consensus 86 WDl~--------t--------~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l 149 (818)
|-.. + ......+.+|...|..++|+|++.++++++.|..+++||+..|.....+..|...+..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9765 2 33556678899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe----------c---------CC----CCEEEEEEeCCCCEEEEEeC-
Q 003459 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK----------C---------HE----GQIQCIDFHPHEFLLATGSA- 205 (818)
Q Consensus 150 ~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~----------~---------h~----~~I~sv~fspdg~~Lasgs~- 205 (818)
+|.|-++++++-+.|...+.+.+...+.++... . |. .-...++|+|+|.+|++...
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 999999999999888877776665433222211 0 11 12456789999999988642
Q ss_pred ---CC-----eEEEEECCC-CeEEEEeCCCCCCeeEEEEe------------------CCCCEEEEEECCCEEEEEecCC
Q 003459 206 ---DR-----TVKFWDLET-FELIGSAGPETSGVRCLTFN------------------PDGRTLLCGLHESLKVFSWEPI 258 (818)
Q Consensus 206 ---Dg-----~I~IwDl~t-~~~i~~~~~~~~~I~sl~fs------------------pdg~~Lasgs~d~I~Vwd~~~~ 258 (818)
++ +.++|+-.. .+++..+.....+...+.|+ |.+-.+++++.+.+.|||-+.-
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~ 331 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTL 331 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccc
Confidence 22 334554332 22333333333333444433 3345667888999999998877
Q ss_pred ceecc-ccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCce
Q 003459 259 RCHDA-VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 259 ~~~~~-~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
..+.+ .+.++..++++++ .+|..|+.++.||...+-.++..++.
T Consensus 332 ~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 332 EPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred cceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 66654 4788999999987 67899999999999999888877755
No 145
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=4.4e-18 Score=174.70 Aligned_cols=248 Identities=21% Similarity=0.386 Sum_probs=190.7
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----CeEEEEEcCCCCCeEEEEEeC--CCCEEEEEECCCcEEEEE
Q 003459 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE----AKIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWD 129 (818)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t----~~~v~~l~~h~~~V~sv~fsp--dg~~Lasgs~Dg~I~IwD 129 (818)
.+|.+-|.++.|++.|+.+|+|+.|++|+|||... ..+....+.|.+.|..+.|-+ .|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46889999999999999999999999999999653 346667788999999999954 688999999999999997
Q ss_pred CC---------CCeEEEEEecCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCC------eEEEEEe-------cCC
Q 003459 130 IR---------KKGCIHTYKGHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAG------KLLHDFK-------CHE 185 (818)
Q Consensus 130 l~---------~~~~i~~l~~h~~~V~~l~fsp--dg~~L~sgs~Dg~I~IwDl~t~------~~i~~~~-------~h~ 185 (818)
-. ......++......|+.++|.| -|-.|++++.||.|+||+.-.. .+.+++. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 52 1123445666778899999999 5778999999999999986543 3333443 245
Q ss_pred CCEEEEEEeCC---CCEEEEEeCC-----CeEEEEECCC----CeEEEEeCCCCCCeeEEEEeCC----CCEEEEEECCC
Q 003459 186 GQIQCIDFHPH---EFLLATGSAD-----RTVKFWDLET----FELIGSAGPETSGVRCLTFNPD----GRTLLCGLHES 249 (818)
Q Consensus 186 ~~I~sv~fspd---g~~Lasgs~D-----g~I~IwDl~t----~~~i~~~~~~~~~I~sl~fspd----g~~Lasgs~d~ 249 (818)
.+..|+.|+|. ..+||.|+.+ +.++||.... ...+..+..|..+|++|+|.|+ -..|++++.++
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 67789999984 5689998866 4788887643 3456667889999999999996 34678899999
Q ss_pred EEEEEecCCce--------------------eccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 250 LKVFSWEPIRC--------------------HDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 250 I~Vwd~~~~~~--------------------~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
|+||.+...+. ...++.+.+.+..+.+ -.|.+|++.+.||+|++|.....+...
T Consensus 250 v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~k 324 (361)
T KOG2445|consen 250 VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWK 324 (361)
T ss_pred EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhhe
Confidence 99999985321 1112333334444443 358899999999999999887776544
No 146
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.81 E-value=1.9e-16 Score=173.34 Aligned_cols=288 Identities=31% Similarity=0.607 Sum_probs=230.1
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeC-CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGE-DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIK 84 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~-Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~ 84 (818)
.....+..|...|.+++|+|+ +.+++.++. |+.+++|+...+..+..+.+|...|.+++|+|++. ++++++.|+.|+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~ 224 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR 224 (466)
T ss_pred eEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence 455678899999999999994 557777775 99999999998889999999999999999999998 555558999999
Q ss_pred EEECCCCeEEE-EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003459 85 LWDLEEAKIVR-TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 85 IWDl~t~~~v~-~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~-i~~l~~h~~~V~~l~fspdg~~L~sgs 162 (818)
+||...+.... .+.+|.... ...|++++.++++++.|+.+++||+..... +..+..|...+.++.|.|++..+++++
T Consensus 225 ~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 225 LWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred EEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 99999888888 688888875 448999998999999999999999986664 555567889999999999888999999
Q ss_pred CCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003459 163 EDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATG-SADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sv~fspdg~~Lasg-s~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg 239 (818)
.|+.+.+||........... .|...+..+.|.+++..++.+ ..|+.+.+|++............. .+..+.+.+ .
T Consensus 304 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~ 381 (466)
T COG2319 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D 381 (466)
T ss_pred CCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C
Confidence 99899999999887777665 677789999994332455555 678999999999887333333222 288999988 5
Q ss_pred CEEEE-E-ECCCEEEEEecCCceecccccc-ccceeeeeecCCCEEEEEEcCCeEEEEEecC
Q 003459 240 RTLLC-G-LHESLKVFSWEPIRCHDAVDVG-WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 240 ~~Las-g-s~d~I~Vwd~~~~~~~~~~~~~-~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
..+.. + .++.+.+|+............. ..........++..++.++.++.+.+|+...
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 33333 2 3447999999888776655444 3434444457788888899999999999998
No 147
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.6e-17 Score=182.66 Aligned_cols=288 Identities=18% Similarity=0.333 Sum_probs=220.1
Q ss_pred eeEEEEecCCC-CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 7 YKLQEFVAHSS-TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 7 ~kl~~~~~H~~-~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
+....+.+|.+ .|.+++|++ +++ |++.+-+|.|.-||+.+.+....+....+.|++++.+|.+..++.|+.||.+..
T Consensus 59 ~~~~vi~g~~drsIE~L~W~e-~~R-LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 59 FLEPVIHGPEDRSIESLAWAE-GGR-LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYD 136 (691)
T ss_pred eeeEEEecCCCCceeeEEEcc-CCe-EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEE
Confidence 44456667655 799999995 554 778888999999999999999999999999999999999999999999999888
Q ss_pred EECCCCeEEEE--EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe--------cCCCCeEEEEEcCCC
Q 003459 86 WDLEEAKIVRT--LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--------GHTRGVNAIRFTPDG 155 (818)
Q Consensus 86 WDl~t~~~v~~--l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~--------~h~~~V~~l~fspdg 155 (818)
++...++.... +....+.+.++.|+|++..++.|+.||.|++||...+..++... +...-|+++.|-.++
T Consensus 137 ~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~ 216 (691)
T KOG2048|consen 137 FSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS 216 (691)
T ss_pred EecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC
Confidence 99888876543 44556899999999999999999999999999999888766322 122347778877554
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE----EEEeCCCCCCee
Q 003459 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL----IGSAGPETSGVR 231 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~----i~~~~~~~~~I~ 231 (818)
.|++|...|+|.+||...+.++..+..|.+.|.+++..+++..+++++.|+.|..|...+.+. ......|...++
T Consensus 217 -tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvr 295 (691)
T KOG2048|consen 217 -TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVR 295 (691)
T ss_pred -cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccce
Confidence 699999999999999999999999999999999999999999999999999999888766532 333567788899
Q ss_pred EEEEeCCCCEEEEEECCC-EEEEEecCCceecc-ccccccceeeeeecCCCEEEEEEcCCeEEEEEecCC
Q 003459 232 CLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDA-VDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 232 sl~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~-~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
+++..++ .|++|+.+. +.+-.....+..+. ....+..-..+.....+.|..-..+..+.+|.+...
T Consensus 296 s~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~ 363 (691)
T KOG2048|consen 296 SMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSV 363 (691)
T ss_pred eeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCccceEEEEeccccccceeccCc
Confidence 9999877 677776664 33332222111111 111111111122233456666666777777776665
No 148
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=3.4e-18 Score=183.36 Aligned_cols=252 Identities=13% Similarity=0.297 Sum_probs=207.2
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE--EecCCC-CCeEEEEEcCCCCEEEEEECC
Q 003459 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL--SLSGHT-SGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 4 ~r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~--~l~~h~-~~V~~l~fspdg~~Lasgs~D 80 (818)
++..+++.+.--..+|.+++|.|++...+++++....++.||+.+.+... ...++. ..+.....++++++|+..+..
T Consensus 245 k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~ 324 (514)
T KOG2055|consen 245 KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN 324 (514)
T ss_pred ccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC
Confidence 34456677777788999999999776689999999999999998776543 333443 356777889999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-CeEEEEEcCCCCEEE
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR-GVNAIRFTPDGRWVV 159 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~-~V~~l~fspdg~~L~ 159 (818)
|.|.+....+++.+.+++ ..+.|..++|+.+++.|++++.+|.|++||++...+++++....+ .-+++|.+++|.|||
T Consensus 325 G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 325 GHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLA 403 (514)
T ss_pred ceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEE
Confidence 999999999999998888 667899999999999999999999999999999999999874332 235677788999999
Q ss_pred EEECCCeEEEEECCC------CeEEEEEecCCCCEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCeEEEEeCCC---CC
Q 003459 160 SGGEDNTVKLWDLTA------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELIGSAGPE---TS 228 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t------~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~--Dg~I~IwDl~t~~~i~~~~~~---~~ 228 (818)
+|+..|.|.|||..+ .+++..+..-...|+++.|+++..+||.++. +..+++..+.+......+... -+
T Consensus 404 ~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg 483 (514)
T KOG2055|consen 404 TGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVG 483 (514)
T ss_pred eccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCccc
Confidence 999999999999653 4566666666788999999999999998874 568999888877666555333 45
Q ss_pred CeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003459 229 GVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (818)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (818)
.|+|++|+|.|-+|++|.++ .+.+|.+.
T Consensus 484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 68999999999999999877 48888764
No 149
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.80 E-value=3.8e-18 Score=179.08 Aligned_cols=202 Identities=22% Similarity=0.477 Sum_probs=165.2
Q ss_pred cCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCC----------------CeEEEEEcCCCCCeEEEEEeCCCC-EE
Q 003459 56 SGHTSGIDSVSFDSS--EVLVAAGAASGTIKLWDLEE----------------AKIVRTLTGHRSNCISVDFHPFGE-FF 116 (818)
Q Consensus 56 ~~h~~~V~~l~fspd--g~~Lasgs~DG~I~IWDl~t----------------~~~v~~l~~h~~~V~sv~fspdg~-~L 116 (818)
-+|.+.++.+.-.+- ..+.++-+..|.|+|||+.. .+++.++.+|...-+.++|+|... .|
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 357777777776654 45667778889999999742 356788899999999999999433 58
Q ss_pred EEEECCCcEEEEECCCCeEE---EEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCEE
Q 003459 117 ASGSLDTNLKIWDIRKKGCI---HTYKGHTRGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQ 189 (818)
Q Consensus 117 asgs~Dg~I~IwDl~~~~~i---~~l~~h~~~V~~l~fspd-g~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~I~ 189 (818)
++|.--+.|++|...++... ..+.+|...|..++|+|. ...|++|+.||+|+|||+|.+ .++. .+.|.+.|+
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVN 306 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVN 306 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCcee
Confidence 88888889999998887643 235679999999999994 468899999999999999987 3333 378999999
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCC---CeEEEEeCCCCCCeeEEEEeCCC--CEEEEEECCCEEEEEecCC
Q 003459 190 CIDFHPHEFLLATGSADRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDG--RTLLCGLHESLKVFSWEPI 258 (818)
Q Consensus 190 sv~fspdg~~Lasgs~Dg~I~IwDl~t---~~~i~~~~~~~~~I~sl~fspdg--~~Lasgs~d~I~Vwd~~~~ 258 (818)
.|.|+.+..+||+|+.||+++|||++. ++++..+..|..+|++|.|+|.. .++++|.++.|.+||+...
T Consensus 307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 999999988999999999999999986 56788999999999999999853 3444566668999998654
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=2e-18 Score=191.05 Aligned_cols=250 Identities=20% Similarity=0.323 Sum_probs=191.6
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE--ecCCCCCeEEEEEcCCC-CEEEEEECCCeEEE
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS--LSGHTSGIDSVSFDSSE-VLVAAGAASGTIKL 85 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~--l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~I 85 (818)
+..+.+|.+.|..++|.| +...|++++.|.++++||+...+++.. +.||.+.|.+++|.+.. ..|++|+.||.|.|
T Consensus 93 lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred hcccccccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 567889999999999999 888999999999999999998888776 88999999999999955 57889999999999
Q ss_pred EECCCCe---------------------------EEEEEcCCCCCeEE---EEEeCCCCEEEEEEC-CCcEEEEECCCCe
Q 003459 86 WDLEEAK---------------------------IVRTLTGHRSNCIS---VDFHPFGEFFASGSL-DTNLKIWDIRKKG 134 (818)
Q Consensus 86 WDl~t~~---------------------------~v~~l~~h~~~V~s---v~fspdg~~Lasgs~-Dg~I~IwDl~~~~ 134 (818)
||+.-.. .+.....+...|.+ +.+..|...||+++. |+.|++||+++..
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 9985321 01111234444555 555668889999887 9999999999765
Q ss_pred EEEEE--------ecC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEecCCC--CEEEEEEeCCCCE
Q 003459 135 CIHTY--------KGH---TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEG--QIQCIDFHPHEFL 199 (818)
Q Consensus 135 ~i~~l--------~~h---~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~--~I~sv~fspdg~~ 199 (818)
..... ..| ...+.++.....|.+|++.+.|+.|++||+..-. ++..+.++.. ....-..+|++.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 44332 223 2357788888889999999999999999998632 3444443321 1223346899999
Q ss_pred EEEEeCCCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCC--CCEEEEEECC-CEEEEEecCCce
Q 003459 200 LATGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPD--GRTLLCGLHE-SLKVFSWEPIRC 260 (818)
Q Consensus 200 Lasgs~Dg~I~IwDl~t~~-~i~~~~~~~~~I~sl~fspd--g~~Lasgs~d-~I~Vwd~~~~~~ 260 (818)
|++|+.|...++|.+.+.+ ....+.+|.-.|++++|.|. +..+.+ ++| +++||++..+-+
T Consensus 332 l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~Tc-SdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATC-SDDFRVKIWRLSNGLE 395 (720)
T ss_pred EeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceee-ccCcceEEEeccCchh
Confidence 9999999999999998755 35557788889999999874 455555 555 799999965533
No 151
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=7.7e-18 Score=173.12 Aligned_cols=245 Identities=18% Similarity=0.294 Sum_probs=192.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec
Q 003459 62 IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG 141 (818)
Q Consensus 62 V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~ 141 (818)
..|+.|++.|.+||+|+.||.|.|||+.+..+-+.+.+|..+|++++|+++|++|++++.|..|.+||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCC----CEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 003459 142 HTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG----QIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 142 h~~~V~~l~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~----~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t 216 (818)
..++|+...|+|.. +.+++.-.+..-.+.++..++...--....+ .-.+..|++.|+++++|...|.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 67899999999943 3333333344445555554322111111111 123346889999999999999999999999
Q ss_pred CeEEEEeCCCC-CCeeEEEEeCCCCEEEEEECC-CEEEEEecCC----ce---------eccc-cccccceeeeeecCCC
Q 003459 217 FELIGSAGPET-SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI----RC---------HDAV-DVGWSRLSDLNVHEGK 280 (818)
Q Consensus 217 ~~~i~~~~~~~-~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~----~~---------~~~~-~~~~~~v~~l~~~~g~ 280 (818)
.+++..++-.. ..|..+.|+..|++|+..+.| .|+.|+.... +. ++++ ...|.. +.+..+|.
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~--ccfs~dge 262 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK--CCFSGDGE 262 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh--eeecCCcc
Confidence 99999887666 789999999999999987666 5999987621 11 1111 455654 34446888
Q ss_pred EEEEEE-cCCeEEEEEecCCCceeeeeccc
Q 003459 281 LLGCSY-NQSCVGVWVVDISRIEPYTIGSV 309 (818)
Q Consensus 281 lLatg~-~Dg~V~IWdvd~~~~~~~~~~~~ 309 (818)
+++.++ ....++||.-.+|.+.....|..
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~k 292 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGTK 292 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCCc
Confidence 876554 45789999999999998877776
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.79 E-value=1.7e-18 Score=186.45 Aligned_cols=218 Identities=17% Similarity=0.326 Sum_probs=188.0
Q ss_pred EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003459 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (818)
.|++... ...++++||..+.|+|||+....+.+.+++|.+.|+++.++....|||+++..|.|.|..+.++.....|..
T Consensus 83 ~Cv~~~s-~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 83 FCVACAS-QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHhhhh-cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 3444433 346899999999999999997778888999999999999999999999999999999999999888777774
Q ss_pred C-CCCeEEEEEeCCCCE-EEEEECCCcEEEEECCCCeEEEEE-ecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 003459 100 H-RSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAG 175 (818)
Q Consensus 100 h-~~~V~sv~fspdg~~-Lasgs~Dg~I~IwDl~~~~~i~~l-~~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t~ 175 (818)
. ...|.-+.|+|..++ |.+++.+|.|.+||+....++..+ ..|..+...|+|+| +..+|++.+.|..|.+||++..
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 3 345678999998875 677899999999999988777655 57999999999999 5678889999999999999987
Q ss_pred eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEeCCC
Q 003459 176 KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 176 ~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t-~~~i~~~~~~~~~I~sl~fspdg 239 (818)
+....+. ...+...++|.++|.+|++|+..|.|..||++. ..++..+..|...|++++|-+.-
T Consensus 242 ~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 242 ASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 7766665 467899999999999999999999999999986 45788888899999999998765
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=2.1e-17 Score=171.02 Aligned_cols=290 Identities=20% Similarity=0.390 Sum_probs=216.6
Q ss_pred ccceeEEE--EecCCCCEEEEEEee----CCCcEEEEEeCCCeEEEEECCCCceEE---Eec--CCCCCeEEEEEcCC--
Q 003459 4 KRAYKLQE--FVAHSSTVNCLKIGR----KSSRVLVTGGEDHKVNLWAIGKPNAIL---SLS--GHTSGIDSVSFDSS-- 70 (818)
Q Consensus 4 ~r~~kl~~--~~~H~~~V~~lafsp----~~~~lLatgs~Dg~V~lWdl~~~~~i~---~l~--~h~~~V~~l~fspd-- 70 (818)
++.|++.. ...|+.+|..++|++ +....+++.|. ..+.+|.......+. .+. .|......++|.-+
T Consensus 24 k~~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 24 KRSYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSN 102 (385)
T ss_pred ccceEeeeehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCC
Confidence 44555542 357889999999985 34457777776 468899875433222 222 36677888888543
Q ss_pred --CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEe---cCCC
Q 003459 71 --EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYK---GHTR 144 (818)
Q Consensus 71 --g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l~---~h~~ 144 (818)
..++|+|+.-|.|+|.|+.+++....+.+|...|..+.|+|+. +++++++.|..|++|++++..|+..+. +|.+
T Consensus 103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccC
Confidence 4489999999999999999999999999999999999999976 589999999999999999999998874 6999
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE------E-------------------E---EEecCCCCEEEEEEeCC
Q 003459 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL------L-------------------H---DFKCHEGQIQCIDFHPH 196 (818)
Q Consensus 145 ~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~------i-------------------~---~~~~h~~~I~sv~fspd 196 (818)
.|.++.|+++|.+|++++.|..|++|++...+. . . +-..|...|.|+.|-
T Consensus 183 eVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-- 260 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-- 260 (385)
T ss_pred cEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--
Confidence 999999999999999999999999999973211 0 0 111245555666654
Q ss_pred CCEEEEEeCCCeEEEEECC-CC-------------eEEEEeCCCCCCeeEEEE--eCCCCEEEEEECC-CEEEEEecCCc
Q 003459 197 EFLLATGSADRTVKFWDLE-TF-------------ELIGSAGPETSGVRCLTF--NPDGRTLLCGLHE-SLKVFSWEPIR 259 (818)
Q Consensus 197 g~~Lasgs~Dg~I~IwDl~-t~-------------~~i~~~~~~~~~I~sl~f--spdg~~Lasgs~d-~I~Vwd~~~~~ 259 (818)
|.++++-+-++.|..|... -. ..+..+......|+-+.| .+-++.|+.|... .+.+||++...
T Consensus 261 gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 261 GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 5689998889999999872 11 123334444555666654 5568899998766 59999998765
Q ss_pred eeccc----cccccceeeeee-cCCCEEEEEEcCCeEEEEEe
Q 003459 260 CHDAV----DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 260 ~~~~~----~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdv 296 (818)
..... ......+....+ .+|.+|+...+|++|.-||-
T Consensus 341 p~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 341 PPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 53211 233344555544 68999999999999999984
No 154
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.79 E-value=4.4e-18 Score=187.96 Aligned_cols=281 Identities=16% Similarity=0.321 Sum_probs=216.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (818)
.|..++|-||+..++++++ ..+.+||..+|..+.++++|.+.|+|++|+.||+.+++|+.|..|.+|.-.-...+ .+
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY 90 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee
Confidence 7999999998877666654 47999999999999999999999999999999999999999999999985432222 22
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (818)
Q Consensus 98 ~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (818)
.|.+.|.|+.|+|-...|++++.. ..-+|...... +..++ ....+.+++|..||.+|+.|-.+|+|.+-+-. ++.
T Consensus 91 -SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~-V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEe 165 (1081)
T KOG1538|consen 91 -SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKS-VSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEE 165 (1081)
T ss_pred -ccCCeeeEeecCchHHHhhhcchh-hccccChhhhh-HHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCc
Confidence 499999999999999999998764 36788876543 22332 24568899999999999999999999998754 433
Q ss_pred EEEEe---cCCCCEEEEEEeCC-----CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-
Q 003459 178 LHDFK---CHEGQIQCIDFHPH-----EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE- 248 (818)
Q Consensus 178 i~~~~---~h~~~I~sv~fspd-----g~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d- 248 (818)
-..+. +...+|++++|+|. ...+++.....++.+|.+. |+.+..-+...-...|+.+.++|.|+..|+.+
T Consensus 166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence 33332 35678999999996 2588888899999999875 56666555555566899999999999887555
Q ss_pred CEEEEEecCCceeccccccccceeee-eecCCCEEEEEEcCCeEEEEEecCCCceeeeecc
Q 003459 249 SLKVFSWEPIRCHDAVDVGWSRLSDL-NVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (818)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~~~~v~~l-~~~~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~ 308 (818)
.+++|--+..+.-.+-+.. .-+..+ .-++++.++.|..||+|-.|++-.+.+..++...
T Consensus 245 ~L~~fTR~GvrLGTvg~~D-~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~R 304 (1081)
T KOG1538|consen 245 QLSLFTRDGVRLGTVGEQD-SWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDR 304 (1081)
T ss_pred ceEEEeecCeEEeeccccc-eeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHh
Confidence 6888865544332222211 122233 3489999999999999999999988877665544
No 155
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.79 E-value=6.3e-18 Score=174.83 Aligned_cols=240 Identities=25% Similarity=0.436 Sum_probs=191.5
Q ss_pred cCCCCEEEEEEeeC---CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECC
Q 003459 14 AHSSTVNCLKIGRK---SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 14 ~H~~~V~~lafsp~---~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~ 89 (818)
.|...-..++|+-+ +..++|+||.-|.|+|.|+.++++...+.+|...|+.+.|+|+. +++++++.|..|++|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 47778888899764 34589999999999999999999999999999999999999965 689999999999999999
Q ss_pred CCeEEEEEc---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE------E-------------------E---E
Q 003459 90 EAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC------I-------------------H---T 138 (818)
Q Consensus 90 t~~~v~~l~---~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~------i-------------------~---~ 138 (818)
+..++..|- +|...|.++.|+.+|.+|++++.|..|++|++...+. . . +
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 999998874 7999999999999999999999999999999973211 0 0 1
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCC-------------eEEEEEecCCCCEEEEEE--eCCCCEEEE
Q 003459 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL-TAG-------------KLLHDFKCHEGQIQCIDF--HPHEFLLAT 202 (818)
Q Consensus 139 l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl-~t~-------------~~i~~~~~h~~~I~sv~f--spdg~~Las 202 (818)
-..|...|.|+.|- |+++++=+-++.|..|.. .-+ ..+.++.-....|+-+.| .|-+++||.
T Consensus 247 ~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred cccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhh
Confidence 12477778888886 689999999999999987 211 123344444556666655 455889999
Q ss_pred EeCCCeEEEEECCCCeEEE--Ee--CCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 203 GSADRTVKFWDLETFELIG--SA--GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 203 gs~Dg~I~IwDl~t~~~i~--~~--~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
|...|.|++||++...+.. ++ ......|+..+|+.||.+|+...+++ .||-|+
T Consensus 325 gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~-~Vwrwd 381 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG-TVWRWD 381 (385)
T ss_pred ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC-cEEEEE
Confidence 9999999999998766521 11 22245789999999999998776664 456554
No 156
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=5.4e-17 Score=181.33 Aligned_cols=286 Identities=17% Similarity=0.321 Sum_probs=220.8
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--eEE-----EecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AIL-----SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~--~i~-----~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
.||.+.|.++.|+| .+..|.+++.|.++.+|...+.. .+. ...+......+..|+|+++.+++-+..|-.++
T Consensus 264 ~GHeDWV~sv~W~p-~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHP-EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred cCcccceEEEEEcc-chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 49999999999999 55678899999999999875542 222 22344567899999999999999999999999
Q ss_pred EECCCC---eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC--------------------C----------
Q 003459 86 WDLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR--------------------K---------- 132 (818)
Q Consensus 86 WDl~t~---~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~--------------------~---------- 132 (818)
|...+. .....+.||...|.+++|+|.|+||++.+.|.+-++|-.- .
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~F 422 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQF 422 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCcee
Confidence 983332 3344567999999999999999999999998776665221 0
Q ss_pred -----CeE------------------------------------------------------------------------
Q 003459 133 -----KGC------------------------------------------------------------------------ 135 (818)
Q Consensus 133 -----~~~------------------------------------------------------------------------ 135 (818)
.+.
T Consensus 423 VSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~e 502 (764)
T KOG1063|consen 423 VSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTE 502 (764)
T ss_pred eecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccC
Confidence 000
Q ss_pred ---------------EEEEecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEecCCCCEEEEEEeC
Q 003459 136 ---------------IHTYKGHTRGVNAIRFTPDGRWVVSGGED-----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP 195 (818)
Q Consensus 136 ---------------i~~l~~h~~~V~~l~fspdg~~L~sgs~D-----g~I~IwDl~t~~~i~~~~~h~~~I~sv~fsp 195 (818)
++++-+|...|++++.+|+|+++++++.. ..|++|+..+...++.+.+|.-.|+.++|+|
T Consensus 503 PP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp 582 (764)
T KOG1063|consen 503 PPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP 582 (764)
T ss_pred CChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC
Confidence 00112677889999999999999999864 4699999999999999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeE----EEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC--ceecc---cc
Q 003459 196 HEFLLATGSADRTVKFWDLETFEL----IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI--RCHDA---VD 265 (818)
Q Consensus 196 dg~~Lasgs~Dg~I~IwDl~t~~~----i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~--~~~~~---~~ 265 (818)
||++|++.+.|+++.+|....... ....+.|..-|++..|+|++.++++++.| .++||..... ++... ++
T Consensus 583 dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~ 662 (764)
T KOG1063|consen 583 DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLK 662 (764)
T ss_pred CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhc
Confidence 999999999999999998754321 23367888889999999999999999877 6999998776 33222 11
Q ss_pred ccccceeeeee------cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 266 VGWSRLSDLNV------HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 266 ~~~~~v~~l~~------~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
. ...++.+.+ ..+.++++|...|.|.+|...-..
T Consensus 663 ~-~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 663 F-SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred c-CCceeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence 1 122333332 234588999999999999866433
No 157
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=7.8e-19 Score=188.24 Aligned_cols=288 Identities=18% Similarity=0.229 Sum_probs=242.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE
Q 003459 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT 138 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~ 138 (818)
...-..+.++.+|++++.|+..|.|..+|+.+++....+. -...|.++.|-.+..+||++ ....++||| ..|..++.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEee
Confidence 4456788999999999999999999999999999988887 45678999999888888877 578899999 56777888
Q ss_pred EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 003459 139 YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (818)
Q Consensus 139 l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~ 218 (818)
++.|. .|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-...+-+|..+|+|.+|.....+
T Consensus 206 lk~~~-~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRHI-RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhcC-chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 88665 58999999999899999999999999999999999998888999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEE--
Q 003459 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWV-- 295 (818)
Q Consensus 219 ~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWd-- 295 (818)
++..+..|.++|.+|++.++|+|+++++-| .++|||+........+.. -.+...+.+.+..+||++..+ .|.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~SqkglLA~~~G~-~v~iw~d~ 362 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKGLLALSYGD-HVQIWKDA 362 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCccccccccccceeeecCC-eeeeehhh
Confidence 999999999999999999999999976555 799999987765444433 233445566677777777665 899993
Q ss_pred ec--CCCceeeeecccceeccccccccCCCCCcccccccccccccCCCcccCCCcccccc
Q 003459 296 VD--ISRIEPYTIGSVTRVNGLSESKSSASGNLSVLNENSAKASLGKLSVSQNSDPLVKE 353 (818)
Q Consensus 296 vd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (818)
++ ...-.||+.+.... .-+.-..++....+.+++..++.+.+.+++|+||||+....
T Consensus 363 ~~~s~~~~~pYm~H~~~~-~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGePN~Ds~e~n 421 (545)
T KOG1272|consen 363 LKGSGHGETPYMNHRCGG-PVEDLRFCPYEDVLGIGHAGGITSILVPGSGEPNYDSLEDN 421 (545)
T ss_pred hcCCCCCCcchhhhccCc-ccccceeccHHHeeeccccCCceeEeccCCCCCCcchhccC
Confidence 22 45677888777665 44556677888889999999999999999999999876543
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.8e-18 Score=202.99 Aligned_cols=244 Identities=23% Similarity=0.374 Sum_probs=198.1
Q ss_pred CCCEEEEEEeeCCCc---EEEEEeCCCeEEEEECCC---C---ceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEE
Q 003459 16 SSTVNCLKIGRKSSR---VLVTGGEDHKVNLWAIGK---P---NAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKL 85 (818)
Q Consensus 16 ~~~V~~lafsp~~~~---lLatgs~Dg~V~lWdl~~---~---~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~I 85 (818)
...-+.++|++.+.. ++|.|.+||.|.+||... + ..+.+...|++.|..+.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345778999986655 699999999999999854 2 34556678999999999999654 9999999999999
Q ss_pred EECCCCeEEEEEc--CCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCC--CeEEEEEcCCC-CEEE
Q 003459 86 WDLEEAKIVRTLT--GHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTR--GVNAIRFTPDG-RWVV 159 (818)
Q Consensus 86 WDl~t~~~v~~l~--~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~--~V~~l~fspdg-~~L~ 159 (818)
||+..-+.-.+.. ...+.|.+++|+..-. .|++++.+|.+.|||++..+.+..+..+.. .+..++|+|++ ..|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 9998754433332 2457899999987544 688899999999999999988887776554 47789999975 3566
Q ss_pred EEECCC---eEEEEECCC-CeEEEEEecCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003459 160 SGGEDN---TVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (818)
Q Consensus 160 sgs~Dg---~I~IwDl~t-~~~i~~~~~h~~~I~sv~fspdg-~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~ 234 (818)
+++.|. .|.+||+|. ...++.+.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+..+.....++..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 666553 599999985 45677788999999999999976 8999999999999999999999999988889999999
Q ss_pred EeCCCC-EEEEE-ECCCEEEEEecCCc
Q 003459 235 FNPDGR-TLLCG-LHESLKVFSWEPIR 259 (818)
Q Consensus 235 fspdg~-~Lasg-s~d~I~Vwd~~~~~ 259 (818)
|+|..- .++++ .++.|.||.+....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999866 44444 56679999987554
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=5.9e-18 Score=181.08 Aligned_cols=208 Identities=21% Similarity=0.409 Sum_probs=171.4
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCC
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~t 90 (818)
-.+|++.|..++|+.....+||+|+.|.+|++||+.++++..++..|...|.++.|+|. ..+|++|+.|++|.+.|.+.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD 318 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence 34799999999999888889999999999999999999999999999999999999984 57899999999999999984
Q ss_pred CeE-EEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCe
Q 003459 91 AKI-VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPD-GRWVVSGGEDNT 166 (818)
Q Consensus 91 ~~~-v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~fspd-g~~L~sgs~Dg~ 166 (818)
... -..++ ..+.|-.++|.|... .++++..||+|+-+|+|.. +++.+++.|.++|.++++++. ..++++++.|+.
T Consensus 319 ~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 319 PSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred ccccCceEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 221 12222 457799999999765 6888889999999999975 899999999999999999873 457899999999
Q ss_pred EEEEECCCCeE--EEEEecCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeEE
Q 003459 167 VKLWDLTAGKL--LHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELI 220 (818)
Q Consensus 167 I~IwDl~t~~~--i~~~~~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~i 220 (818)
|++|++..... +..-...-+...|.++.|+ ..+++.|+..+.+++||+.+...+
T Consensus 398 Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 398 VKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred EEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99999875332 2222222344677888887 457888888899999999876554
No 160
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4.5e-17 Score=167.61 Aligned_cols=235 Identities=16% Similarity=0.286 Sum_probs=189.2
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCC---CceEE---------EecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---PNAIL---------SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~---~~~i~---------~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
.-+.++|+||-..+++..-...++++|.+.+ |.... .-..|.-.|..+-....+.+|++++.|..|.+
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~l 213 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICL 213 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEE
Confidence 4578999998777888887888999997732 21111 11236667888888889999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC---CC-----eEEEEEecCCCCeEEEEEcCCCCE
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---KK-----GCIHTYKGHTRGVNAIRFTPDGRW 157 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~---~~-----~~i~~l~~h~~~V~~l~fspdg~~ 157 (818)
|++. |+.+..+......-+..+.+|+|+++++++.--.|++|.+- .| ..+..+++|...|..++|+++...
T Consensus 214 w~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r 292 (420)
T KOG2096|consen 214 WDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTR 292 (420)
T ss_pred EecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcce
Confidence 9998 99999998777778889999999999999999999999863 22 235678899999999999999999
Q ss_pred EEEEECCCeEEEEECCC-------CeEEEEEe----cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-CC
Q 003459 158 VVSGGEDNTVKLWDLTA-------GKLLHDFK----CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-GP 225 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t-------~~~i~~~~----~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~-~~ 225 (818)
+++.+.||.+++||+.- .+.+.++. ...+.-..+.++|+|..||.+. ...+++|..++++....+ ..
T Consensus 293 ~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred eEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHh
Confidence 99999999999999752 12223221 1123344899999999998876 467999999998876665 46
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCEEEEE
Q 003459 226 ETSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (818)
Q Consensus 226 ~~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (818)
|...|.+|+|+++|++++++++..++++.
T Consensus 372 h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 372 HSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred hcCceeeEEecCCCcEEeeecceeeeeec
Confidence 78899999999999999999988888875
No 161
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.76 E-value=2.7e-17 Score=176.50 Aligned_cols=255 Identities=23% Similarity=0.337 Sum_probs=200.6
Q ss_pred CcccceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce--EEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003459 2 TTKRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDSSEVLVAAGAA 79 (818)
Q Consensus 2 ~t~r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~--i~~l~~h~~~V~~l~fspdg~~Lasgs~ 79 (818)
+.+..-.+.-|..|..+|.++.|+|.+...+++.+.||+|++-|++.... +..+......+..+.|+.+...++.+..
T Consensus 220 ~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~ 299 (498)
T KOG4328|consen 220 QEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN 299 (498)
T ss_pred CCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec
Confidence 34455667789999999999999998888899999999999999976543 3333334556778888888888888888
Q ss_pred CCeEEEEECCCCeE-EEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeE----EEEEecCCCCeEEEEEcC
Q 003459 80 SGTIKLWDLEEAKI-VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGC----IHTYKGHTRGVNAIRFTP 153 (818)
Q Consensus 80 DG~I~IWDl~t~~~-v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~----i~~l~~h~~~V~~l~fsp 153 (818)
-|...+||+++++. ...+.-|...|..++++|... +|++++.|++.+|||++.-.. +...-.|...|.+..|+|
T Consensus 300 ~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSP 379 (498)
T KOG4328|consen 300 VGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSP 379 (498)
T ss_pred ccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcC
Confidence 88999999988654 666777989999999999776 699999999999999985321 222335999999999999
Q ss_pred CCCEEEEEECCCeEEEEECC----CCeEEEEEecCCC------CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 154 DGRWVVSGGEDNTVKLWDLT----AGKLLHDFKCHEG------QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~----t~~~i~~~~~h~~------~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
.+..|++.+.|..|+|||.. .-.+..++. |.. ......|.|+..++++|-.-..|-|||-..++.+..+
T Consensus 380 s~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el 458 (498)
T KOG4328|consen 380 SGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL 458 (498)
T ss_pred CCCceEeeccCCceEEeecccccccCCccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec
Confidence 88889999999999999984 222233332 221 2345679999999999999999999999999988775
Q ss_pred CCC-CCCeeE-EEEeCCCCEEEEEECCCEEEEEecC
Q 003459 224 GPE-TSGVRC-LTFNPDGRTLLCGLHESLKVFSWEP 257 (818)
Q Consensus 224 ~~~-~~~I~s-l~fspdg~~Lasgs~d~I~Vwd~~~ 257 (818)
... ...|.+ ..|+|-+..+++|+..+.+||-|..
T Consensus 459 ~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 459 HDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cCccccccccceeecccccceeccCCccceEEEEec
Confidence 443 335655 4699998878888777777876643
No 162
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.76 E-value=2.6e-17 Score=177.31 Aligned_cols=260 Identities=18% Similarity=0.260 Sum_probs=197.2
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~--~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~ 95 (818)
.|..+.|...+--.++..+.|..+++|.-... +....-+.....-.|++......|+++|+..|.|+|||++...+.+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 38889998633223344467888999974322 2222111122244556555566899999999999999999888888
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCC-EEEEEECCCeEEEEECC
Q 003459 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH-TRGVNAIRFTPDGR-WVVSGGEDNTVKLWDLT 173 (818)
Q Consensus 96 ~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h-~~~V~~l~fspdg~-~L~sgs~Dg~I~IwDl~ 173 (818)
.+.+|...|+++.+.-...|||+++..|.|.|..+.++.....|... ...|.-+.|++..+ +|.+++.+|.|.+||+.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 89999999999999999999999999999999999988877777644 34466899999665 45678899999999998
Q ss_pred CCeEEEEEe-cCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CE
Q 003459 174 AGKLLHDFK-CHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SL 250 (818)
Q Consensus 174 t~~~i~~~~-~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I 250 (818)
...+++.+. .|..+...|+|+|. ..+|++.+.|..|.+||+...+....+. ...+...++|.++|.+|++|... .+
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceEEEeecCCceE
Confidence 877776654 58999999999994 6788999999999999999766655553 35778999999999999999766 48
Q ss_pred EEEEecCCc-eeccccccccceeeeeecC
Q 003459 251 KVFSWEPIR-CHDAVDVGWSRLSDLNVHE 278 (818)
Q Consensus 251 ~Vwd~~~~~-~~~~~~~~~~~v~~l~~~~ 278 (818)
..||+...+ ...++..+-..++.+.+..
T Consensus 275 i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 275 IAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred EEEecccCCCCceEeeecccceeEEEeee
Confidence 888887543 3344444444455555433
No 163
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.75 E-value=4.4e-17 Score=179.34 Aligned_cols=124 Identities=21% Similarity=0.400 Sum_probs=105.3
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce--E----EEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--I----LSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~--i----~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (818)
..+--+.+|.+.|+.+.|+|-...+|+||+.|..|+||.+..+-. + ..+.+..-.|.|+.|+|...-|+..+..
T Consensus 70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 355678899999999999998888999999999999999964321 1 1223344578999999976656666678
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEEC
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 130 (818)
|.++|||+.+++.+..+.+|...|.+..|+.||..|++++.|..|+|||.
T Consensus 150 g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDP 199 (1012)
T KOG1445|consen 150 GSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDP 199 (1012)
T ss_pred ceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCC
Confidence 99999999999999999999999999999999999999999999999986
No 164
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=5.2e-18 Score=199.08 Aligned_cols=280 Identities=18% Similarity=0.333 Sum_probs=210.5
Q ss_pred EEEEEeeCCCcEEEEE----------eCCCeEEEEECC--CCc----eEEEecCCCCCeEEEEEcCCCCE----EEEEEC
Q 003459 20 NCLKIGRKSSRVLVTG----------GEDHKVNLWAIG--KPN----AILSLSGHTSGIDSVSFDSSEVL----VAAGAA 79 (818)
Q Consensus 20 ~~lafsp~~~~lLatg----------s~Dg~V~lWdl~--~~~----~i~~l~~h~~~V~~l~fspdg~~----Lasgs~ 79 (818)
..++|+|.+..++++| +.+.++.||.+. +.. .+-.+. -....+.++|.+.+.. |+.|..
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 3578999765567666 334566777553 222 222222 3457889999886654 889999
Q ss_pred CCeEEEEECCC---C---eEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEE
Q 003459 80 SGTIKLWDLEE---A---KIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIR 150 (818)
Q Consensus 80 DG~I~IWDl~t---~---~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~--~h~~~V~~l~ 150 (818)
||.|.+||... + ..+.+...|.+.|..+.|++... .||+|+.||.|.|||+.+.+.-..+. .....|.+++
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999765 2 24566678999999999999876 99999999999999998765544442 2456799999
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCC--CEEEEEEeCCC-CEEEEEeCCC---eEEEEECCCC-eEEEE
Q 003459 151 FTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG--QIQCIDFHPHE-FLLATGSADR---TVKFWDLETF-ELIGS 222 (818)
Q Consensus 151 fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~--~I~sv~fspdg-~~Lasgs~Dg---~I~IwDl~t~-~~i~~ 222 (818)
|+. ..+.|++++.+|++.|||++..+.+-.+..+.+ .+..+.|||+. ..|++++.|. .|.+||++.- ..+..
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 986 456788999999999999999988887775544 47899999985 4556665543 6999999864 45667
Q ss_pred eCCCCCCeeEEEEeCCC-CEEEEEE-CCCEEEEEecCCceeccccccccceeeeee--cCCCEEEEEEcCCeEEEEEecC
Q 003459 223 AGPETSGVRCLTFNPDG-RTLLCGL-HESLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 223 ~~~~~~~I~sl~fspdg-~~Lasgs-~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~--~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
+..|..+|.++.|++.+ .+|++++ ++.+.+|+.++++.+..+.....-+.++.+ .+-.++++++-||.|.|+.+.+
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 78999999999999977 6666554 446888888888887777664444445544 3446899999999999999887
Q ss_pred CC
Q 003459 299 SR 300 (818)
Q Consensus 299 ~~ 300 (818)
..
T Consensus 329 ~~ 330 (1049)
T KOG0307|consen 329 TD 330 (1049)
T ss_pred CC
Confidence 76
No 165
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=5.9e-15 Score=162.78 Aligned_cols=266 Identities=15% Similarity=0.222 Sum_probs=180.5
Q ss_pred EEEEEeCCCeEEEEECCC-Cc--eEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECC-CCeE--EEEEcCCCCC
Q 003459 31 VLVTGGEDHKVNLWAIGK-PN--AILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLWDLE-EAKI--VRTLTGHRSN 103 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~-~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IWDl~-t~~~--v~~l~~h~~~ 103 (818)
++++...++.|.+|++.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++. +++. +.... ....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~ 81 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGS 81 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCC
Confidence 445557789999999964 32 444444 345678899999999887765 47889999997 3432 22222 3345
Q ss_pred eEEEEEeCCCCEEEEEEC-CCcEEEEECCCCe----EEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE
Q 003459 104 CISVDFHPFGEFFASGSL-DTNLKIWDIRKKG----CIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKL 177 (818)
Q Consensus 104 V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~~----~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~IwDl~t~~~ 177 (818)
...++|+|++++|++++. ++.|.+||+.+.. .+..+. +.....+++++|+|+++++++ .++.|.+||+.+...
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc
Confidence 678999999998888764 7899999997432 233332 334467889999999987665 458999999986432
Q ss_pred EEE-----Ee-cCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCC--C--eEEEEeCCC------CCCeeEEEEeCCCC
Q 003459 178 LHD-----FK-CHEGQIQCIDFHPHEFLLATGSA-DRTVKFWDLET--F--ELIGSAGPE------TSGVRCLTFNPDGR 240 (818)
Q Consensus 178 i~~-----~~-~h~~~I~sv~fspdg~~Lasgs~-Dg~I~IwDl~t--~--~~i~~~~~~------~~~I~sl~fspdg~ 240 (818)
+.. .. ........+.|+|+|++++++.. ++.|.+||++. + +.+..+... ......+.|+|+|+
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 211 11 11234578999999999988876 89999999973 2 333333211 11234688999999
Q ss_pred EEEEEEC--CCEEEEEecCCce----eccccccccceeeeeecCCCEEEEEEc-CCeEEEEEecCC
Q 003459 241 TLLCGLH--ESLKVFSWEPIRC----HDAVDVGWSRLSDLNVHEGKLLGCSYN-QSCVGVWVVDIS 299 (818)
Q Consensus 241 ~Lasgs~--d~I~Vwd~~~~~~----~~~~~~~~~~v~~l~~~~g~lLatg~~-Dg~V~IWdvd~~ 299 (818)
+|+++.. +.|.+|+++.... ...+..+..+-.....++|++|+++.. +++|.+|+++..
T Consensus 241 ~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 241 HLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred EEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 9998854 4699999965431 222333322222333478999887765 899999988643
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.73 E-value=1.8e-16 Score=167.28 Aligned_cols=226 Identities=17% Similarity=0.349 Sum_probs=177.0
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCe
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGT 82 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~-------~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~ 82 (818)
.+.||+++|..++|+|.+...+|+|++|.+|.||.+..+ +.+..+.+|...|.-++|+|. .+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 467999999999999999999999999999999998543 456788899999999999995 467889999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEE
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG-VNAIRFTPDGRWVVSG 161 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~-V~~l~fspdg~~L~sg 161 (818)
|.+||+.+|+.+.++. |...|+++.|+.+|.+|++.+.|..|+|||.++++.+..-.+|.+. -....|..+|..+-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999999988 9999999999999999999999999999999999999888777643 3456677788844444
Q ss_pred E---CCCeEEEEECCCC---eEEEEEecCCCCEEEEEEeCCCCEEE-EEeCCCeEEEEECCCCeEE-EEeCC--CCCCee
Q 003459 162 G---EDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDFHPHEFLLA-TGSADRTVKFWDLETFELI-GSAGP--ETSGVR 231 (818)
Q Consensus 162 s---~Dg~I~IwDl~t~---~~i~~~~~h~~~I~sv~fspdg~~La-sgs~Dg~I~IwDl~t~~~i-~~~~~--~~~~I~ 231 (818)
. .+..+-+||...- -...++. ....|.---|.++..+++ +|-.|+.|+.|.+..-.+. +-+.. ...+-+
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQR 313 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQR 313 (472)
T ss_pred cccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccc
Confidence 3 3567999987643 3344444 344565556778766654 5557999999999875532 22211 123345
Q ss_pred EEEEeCC
Q 003459 232 CLTFNPD 238 (818)
Q Consensus 232 sl~fspd 238 (818)
.+.|-|.
T Consensus 314 G~g~mPK 320 (472)
T KOG0303|consen 314 GMGFMPK 320 (472)
T ss_pred ccccccc
Confidence 5666554
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.8e-17 Score=179.36 Aligned_cols=250 Identities=22% Similarity=0.332 Sum_probs=197.1
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC--------CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK--------PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGT 82 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~--------~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (818)
++..|.+.|+.++|+| ....|++++.||++.+|++.+ -+.+.+|.+|.++|.|+++..++..+++|+.||+
T Consensus 289 tl~s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 7788999999999999 666899999999999999932 3578899999999999999999999999999999
Q ss_pred EEEEECCCC----------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--CCCeEEEE
Q 003459 83 IKLWDLEEA----------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--TRGVNAIR 150 (818)
Q Consensus 83 I~IWDl~t~----------~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h--~~~V~~l~ 150 (818)
|+.|++... .....+.||.+.++.+++++....|++++.||++++|+...... .+|... .+.-..+.
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 999965421 23456789999999999999999999999999999999876655 333321 12234455
Q ss_pred EcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecC-------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 003459 151 FTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCH-------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS 222 (818)
Q Consensus 151 fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-------~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~ 222 (818)
|.... ...++...-+.--++|+..+..+..+... ...+..+.++|.+.+.+++..|+.|+++|..++++++.
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 54322 23333333344445555555444444321 13478899999999999999999999999999999999
Q ss_pred eCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceec
Q 003459 223 AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD 262 (818)
Q Consensus 223 ~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~ 262 (818)
...|...++++++.|+|-+|++++.+ .+.+|..+...|..
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~ 567 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVL 567 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchheee
Confidence 99999999999999999999999877 59999887666643
No 168
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=2.2e-16 Score=164.35 Aligned_cols=266 Identities=20% Similarity=0.259 Sum_probs=190.0
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEE--EcCCC-CCe
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLWDLEEAKIVRT--LTGHR-SNC 104 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IWDl~t~~~v~~--l~~h~-~~V 104 (818)
..+|++...|.|++||..+++.+..++++...+..+.|.. ....+.+++.||+|++||++....... +..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4689999999999999999999999999999999999966 567899999999999999987654433 34444 355
Q ss_pred EEEEEeCCCCEEEEEEC----CCcEEEEECCCCeE-EEEE-ecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCe-
Q 003459 105 ISVDFHPFGEFFASGSL----DTNLKIWDIRKKGC-IHTY-KGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGK- 176 (818)
Q Consensus 105 ~sv~fspdg~~Lasgs~----Dg~I~IwDl~~~~~-i~~l-~~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t~~- 176 (818)
.+++....++.+++|+. +-.|.+||++..+. +..+ ..|...|++++|+| +.+.|++|+.||.|.+||+....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 66666666778888753 56899999998766 5444 46999999999999 67899999999999999997542
Q ss_pred ---EEEEEecCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeEEEEeCCCC------------CCeeEEEEeCCCC
Q 003459 177 ---LLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPET------------SGVRCLTFNPDGR 240 (818)
Q Consensus 177 ---~i~~~~~h~~~I~sv~fspdg-~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~------------~~I~sl~fspdg~ 240 (818)
++..+. |...|.++.|+.++ +.|.+-+..++..+|+++.+.....+.... ..+.......++.
T Consensus 201 eDaL~~viN-~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 201 EDALLHVIN-HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred hhhHHHhhc-ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 233333 67789999999887 457788889999999999887655443220 0111111122334
Q ss_pred EEEEE-E-CCCEEEEEec---CCcee---ccccc-cccceeeeee-cCCCEEEEEEcCCeEEEEEe
Q 003459 241 TLLCG-L-HESLKVFSWE---PIRCH---DAVDV-GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 241 ~Lasg-s-~d~I~Vwd~~---~~~~~---~~~~~-~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdv 296 (818)
..+.+ + .+...++-+. ++... ..+.. +-..+.++.+ ..+.++.+|++||.+.+|..
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 44433 3 3345555443 22221 22222 2223333333 45788999999999999987
No 169
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.9e-16 Score=171.85 Aligned_cols=242 Identities=21% Similarity=0.360 Sum_probs=194.0
Q ss_pred eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC--EEEEEECCCcEEEE
Q 003459 51 AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE--FFASGSLDTNLKIW 128 (818)
Q Consensus 51 ~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~--~Lasgs~Dg~I~Iw 128 (818)
+-..+.||++.|.+|...|.|.+|++|+.||+|+||.+.+|.+++++. ..+.|.||+|+|.+. .||++-. ..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-ECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-CceEEe
Confidence 445678999999999999999999999999999999999999999988 667899999999876 3444433 334444
Q ss_pred ECCCC-------------------------------------eEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---eEE
Q 003459 129 DIRKK-------------------------------------GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN---TVK 168 (818)
Q Consensus 129 Dl~~~-------------------------------------~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg---~I~ 168 (818)
+..-| .-+.....|...|..+.|+..|.||++..-++ .|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32111 01222234778899999999999999987653 689
Q ss_pred EEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003459 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
|+++...+...-|.-..+.|.++.|||...+|++++. ..|+|||+....++..+....-.|.+++++|.|.-|++|+.+
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 9999887777677666788999999999888888874 689999999888888887778889999999999999988777
Q ss_pred -CEEEEEecCC-ceeccccccccceeeeeecCC-CEEEEEEcCCeEEEEE
Q 003459 249 -SLKVFSWEPI-RCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWV 295 (818)
Q Consensus 249 -~I~Vwd~~~~-~~~~~~~~~~~~v~~l~~~~g-~lLatg~~Dg~V~IWd 295 (818)
.+..||++-. +..+.+..+-..+..+++|.. .++++|+.||.+.|+-
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 5777788754 556677777777778887765 7788999999999983
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=1.2e-15 Score=157.67 Aligned_cols=238 Identities=19% Similarity=0.326 Sum_probs=181.0
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-----C--ce-----EEEec-CCCCCeEEEEEc-------CCCCEEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-----P--NA-----ILSLS-GHTSGIDSVSFD-------SSEVLVAAG 77 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~-----~--~~-----i~~l~-~h~~~V~~l~fs-------pdg~~Lasg 77 (818)
-...+.|+| ++..|.+-+.|..+++|++.. + .. ...+. .....|...+|- |+..++++.
T Consensus 51 f~kgckWSP-DGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSP-DGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhccceeCC-CCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 345789999 555678888899999998731 1 10 01111 234567788884 677899999
Q ss_pred ECCCeEEEEECCCCeEEEEEcC--CCC---CeEEEEEeCCCCEEEEEECCCcEEEEEC-CCCeEEEEE-------ecCCC
Q 003459 78 AASGTIKLWDLEEAKIVRTLTG--HRS---NCISVDFHPFGEFFASGSLDTNLKIWDI-RKKGCIHTY-------KGHTR 144 (818)
Q Consensus 78 s~DG~I~IWDl~t~~~v~~l~~--h~~---~V~sv~fspdg~~Lasgs~Dg~I~IwDl-~~~~~i~~l-------~~h~~ 144 (818)
+.+.-|++||.-+|+....+.+ |.. ...+++|+|||.+|++| ....|++||+ +.|+....+ .+..+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 9999999999999998877764 333 34689999999999988 4678999999 544422211 12356
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCC-CeEEE
Q 003459 145 GVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-DRTVKFWDLET-FELIG 221 (818)
Q Consensus 145 ~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~-Dg~I~IwDl~t-~~~i~ 221 (818)
-|.|++|+| +...++.|+....+-||.-..+.++..+.+|.+.|+.++|+++|+.|++|.. |-.|..||++. ..++.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 789999999 5568999999999889888888899999999999999999999999999874 67899999986 44555
Q ss_pred EeCCCCC-CeeEE--EEeCCCCEEEEEEC-CCEEEEEecC
Q 003459 222 SAGPETS-GVRCL--TFNPDGRTLLCGLH-ESLKVFSWEP 257 (818)
Q Consensus 222 ~~~~~~~-~I~sl--~fspdg~~Lasgs~-d~I~Vwd~~~ 257 (818)
.+..|.. .-..| ...|+|++|++|+. +.|++||.+.
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 6665544 22334 45688999999954 4699999986
No 171
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.5e-16 Score=162.85 Aligned_cols=288 Identities=16% Similarity=0.247 Sum_probs=210.6
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC------CCceEEEec-CCCCCeEEEEEcCCCCEEEEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG------KPNAILSLS-GHTSGIDSVSFDSSEVLVAAGA 78 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~------~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs 78 (818)
.+.-+.+.+|.+.|+++.|+. ++++|++|+.|..+.+|++. +++.+.... .|...|.|++|.-...++++|.
T Consensus 46 ~~~qKD~~~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred chhhhhhhhhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC
Confidence 344456779999999999998 68999999999999999974 345555444 3558999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEcC--CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-EEE--EEecCCCCeEEEEEcC
Q 003459 79 ASGTIKLWDLEEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIH--TYKGHTRGVNAIRFTP 153 (818)
Q Consensus 79 ~DG~I~IWDl~t~~~v~~l~~--h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-~i~--~l~~h~~~V~~l~fsp 153 (818)
.+++|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.++.|.+||++... .+. ...........+.|+|
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 999999999999998887762 23589999999999999999999999999998654 222 2233445678899999
Q ss_pred C-CCEEEEEECCCeEEEEECCCCe-EEEEE---ecC---CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE-EEEeC
Q 003459 154 D-GRWVVSGGEDNTVKLWDLTAGK-LLHDF---KCH---EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL-IGSAG 224 (818)
Q Consensus 154 d-g~~L~sgs~Dg~I~IwDl~t~~-~i~~~---~~h---~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~-i~~~~ 224 (818)
. ..+|++.+..+-+-+||.+... .+... .+- ...-.++.|+|+|..|.+--....-.+||+-+..+ +..+.
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 4 5678888888999999998643 22211 111 12236788999999888876666677888877443 33332
Q ss_pred CC------CCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc-----------------------eeccccccccceeee
Q 003459 225 PE------TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR-----------------------CHDAVDVGWSRLSDL 274 (818)
Q Consensus 225 ~~------~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~-----------------------~~~~~~~~~~~v~~l 274 (818)
.. ...+.+++|..|- .+++|+++ +|.+|.+.... .+.++..+.+.+..+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 11 1246778887554 48888888 79999875321 112234444544445
Q ss_pred ee-cCCCEEEEEEcCCeEEEEE
Q 003459 275 NV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 275 ~~-~~g~lLatg~~Dg~V~IWd 295 (818)
.+ +...+|++++-...++||.
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred eecCCcceEeccchhhheeccc
Confidence 44 4456777788889999994
No 172
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=3.7e-14 Score=149.36 Aligned_cols=286 Identities=16% Similarity=0.250 Sum_probs=207.7
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS--GTIKLWDLEEAKI 93 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D--G~I~IWDl~t~~~ 93 (818)
...+..+.|+. +..+|..|+.|| .++|..+..............|.-+-|+. .++|..+.+ ..++++++..+..
T Consensus 5 ~~ti~~~~~Nq-d~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQ-DSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred Ccceeeeeecc-ceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce
Confidence 34677777886 667888999988 78888765554333333334455566654 455555544 4599999998888
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec---CCCCeEEEEEcCCCCEEEEEE--CCCeEE
Q 003459 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG---HTRGVNAIRFTPDGRWVVSGG--EDNTVK 168 (818)
Q Consensus 94 v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~---h~~~V~~l~fspdg~~L~sgs--~Dg~I~ 168 (818)
+..+. ....|.++.++. +.|+++-.+ .|+|||+++.+.++++.. +...+.++.+++.+.+++.-+ ..|.|.
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 88777 567899999874 456666444 499999999999988764 344466666666667887543 358999
Q ss_pred EEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCeEEEEeCCCC--CCeeEEEEeCCCCEEEEE
Q 003459 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT-VKFWDLETFELIGSAGPET--SGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~-I~IwDl~t~~~i~~~~~~~--~~I~sl~fspdg~~Lasg 245 (818)
+||+.+-+.+..+..|.+.+.+++|+++|.+||++++.|+ |++|.+.+|+.+..++-.. ..|.+++|+||+++|++.
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 9999999999999999999999999999999999999996 7999999999999986543 357899999999999876
Q ss_pred EC-CCEEEEEecCCcee-------------------------------------ccccccccc---eeeee-ecCCCEEE
Q 003459 246 LH-ESLKVFSWEPIRCH-------------------------------------DAVDVGWSR---LSDLN-VHEGKLLG 283 (818)
Q Consensus 246 s~-d~I~Vwd~~~~~~~-------------------------------------~~~~~~~~~---v~~l~-~~~g~lLa 283 (818)
++ ++|+||.++..... .......+. +..+. ......+.
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 54 47999988643210 000111111 11111 13568888
Q ss_pred EEEcCCeEEEEEecCCCceeeeeccc
Q 003459 284 CSYNQSCVGVWVVDISRIEPYTIGSV 309 (818)
Q Consensus 284 tg~~Dg~V~IWdvd~~~~~~~~~~~~ 309 (818)
++++||.++.|.++..+-........
T Consensus 317 vas~dG~~y~y~l~~~~gGec~lik~ 342 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPKEGGECALIKR 342 (391)
T ss_pred EEEcCCeEEEEEcCCCCCceeEEEEe
Confidence 99999999999998876555444443
No 173
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=2.4e-16 Score=171.34 Aligned_cols=263 Identities=16% Similarity=0.320 Sum_probs=195.7
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEE-c-------CCCCEEEEEECCCeEEE
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF-D-------SSEVLVAAGAASGTIKL 85 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~f-s-------pdg~~Lasgs~DG~I~I 85 (818)
.|...|.|+.|+. +...+.++ +|..+.+|.--+......+.-....|.-..+ - .....|+.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~-~eei~~~~-dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS-NEEIYFVS-DDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccc-cceEEEec-cCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 5777888999986 44445444 5555666543222222222211121111111 1 12346778889999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg 165 (818)
.+ ..++.-+.+..|.+.+.+-.|+|+|.-|++++.||.|++|. ++|-.-.++.....+|+|++|.|+.+.++.+ ..+
T Consensus 90 l~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~ 166 (737)
T KOG1524|consen 90 LN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGG 166 (737)
T ss_pred ec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEe-cCC
Confidence 88 56778888899999999999999999999999999999998 4555545555567789999999988766665 466
Q ss_pred eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEE
Q 003459 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasg 245 (818)
.+.|=.+.....+-.++.|++-|.++.|++...++++|++|-..++||-. |..+.....|..+|++++|.|| ..++.+
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeee
Confidence 77787777777788899999999999999999999999999999999965 6777788899999999999999 777888
Q ss_pred ECCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEE
Q 003459 246 LHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGV 293 (818)
Q Consensus 246 s~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~I 293 (818)
+.+.++ ++..+.-.++...|+ +||..++||...|.|-+
T Consensus 245 S~nt~R---~~~p~~GSifnlsWS-------~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SYNTAR---FSSPRVGSIFNLSWS-------ADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeee---ecCCCccceEEEEEc-------CCCceeeccccCceEEE
Confidence 888777 333333333344444 78999999988887644
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.71 E-value=6.7e-16 Score=157.37 Aligned_cols=234 Identities=22% Similarity=0.395 Sum_probs=182.1
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCC-------CeEEEEECCCC---------ceEEEec-CCCCCeEEEEEcCCCC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGED-------HKVNLWAIGKP---------NAILSLS-GHTSGIDSVSFDSSEV 72 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~D-------g~V~lWdl~~~---------~~i~~l~-~h~~~V~~l~fspdg~ 72 (818)
..|..|.+.|+.++-+|.+.++|+|+..+ -.+.||.+... +++..+. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 35667889999999999999999988653 24789988433 2333343 3456899999999999
Q ss_pred EEEEEECCCeEEEEECCCCeE-EEEEc-----CCCCCeEEEEEeC--CCCEEEEEECCCcEEEEECCCCeEEEEEe-cCC
Q 003459 73 LVAAGAASGTIKLWDLEEAKI-VRTLT-----GHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHT 143 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~-v~~l~-----~h~~~V~sv~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~-~h~ 143 (818)
.+++-. |..|.+|+++.+.. +..+. ++....++-+|+| +|..+++. .|+++..||+++..+...+. +|.
T Consensus 137 klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHg 214 (370)
T KOG1007|consen 137 KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHG 214 (370)
T ss_pred eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhc
Confidence 988865 88999999988765 33332 3556778889998 56677766 58999999999988776664 688
Q ss_pred CCeEEEEEcCCCC-EEEEEECCCeEEEEECCCC-eEEEEEecCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCC---
Q 003459 144 RGVNAIRFTPDGR-WVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETF--- 217 (818)
Q Consensus 144 ~~V~~l~fspdg~-~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~--- 217 (818)
..|..+.|+|+.. +|++|+.||.|+|||.+.. .+++++.+|...|+++.|+|. ..+|++|+.|..|.+|....-
T Consensus 215 q~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE 294 (370)
T KOG1007|consen 215 QRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE 294 (370)
T ss_pred ceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc
Confidence 8899999999754 6889999999999999864 578888999999999999995 678999999999999965321
Q ss_pred --------------------------eEEEEeCCCCCCeeEEEEeCCCCEEEEE
Q 003459 218 --------------------------ELIGSAGPETSGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 218 --------------------------~~i~~~~~~~~~I~sl~fspdg~~Lasg 245 (818)
..+.++..|...|++++|+.-..+++++
T Consensus 295 ~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 295 QQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred cccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 1233455677778888888777777654
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.69 E-value=8.9e-16 Score=158.60 Aligned_cols=238 Identities=22% Similarity=0.377 Sum_probs=187.8
Q ss_pred CCCEEEEEEee------CCCcEEEEEeCCCeEEEEECCCCceEEEecC--CCC---CeEEEEEcCCCCEEEEEECCCeEE
Q 003459 16 SSTVNCLKIGR------KSSRVLVTGGEDHKVNLWAIGKPNAILSLSG--HTS---GIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 16 ~~~V~~lafsp------~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~--h~~---~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
...|...+|-+ -+..++++.+.+.-|++||.-+|+....+.+ |.+ +..+++|+|||.+|++| ....|+
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcir 182 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIR 182 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEE
Confidence 34577777752 1456888999999999999999988777654 333 45689999999999876 578899
Q ss_pred EEEC-CCCeEE--E-EE----cCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 003459 85 LWDL-EEAKIV--R-TL----TGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG 155 (818)
Q Consensus 85 IWDl-~t~~~v--~-~l----~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg 155 (818)
+||+ +.|.-. . ++ .+..+-|.+++|+|... .+++|+....+-||.-..+.++..+.+|.+.|+.++|.++|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG 262 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCc
Confidence 9998 444321 1 11 12356789999999665 89999999999999888899999999999999999999999
Q ss_pred CEEEEEEC-CCeEEEEECCCC-eEEEEEecCCC-CEEEE--EEeCCCCEEEEEeCCCeEEEEECCC-CeEEEEeCCCCCC
Q 003459 156 RWVVSGGE-DNTVKLWDLTAG-KLLHDFKCHEG-QIQCI--DFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSG 229 (818)
Q Consensus 156 ~~L~sgs~-Dg~I~IwDl~t~-~~i~~~~~h~~-~I~sv--~fspdg~~Lasgs~Dg~I~IwDl~t-~~~i~~~~~~~~~ 229 (818)
+.|++|.. |..|.+||++.. .++..+..|.+ .-..| ...|++.+|++|+.||.|++||+++ +..+..+..+...
T Consensus 263 n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~ 342 (406)
T KOG2919|consen 263 NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT 342 (406)
T ss_pred CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc
Confidence 99999985 678999999964 45566665554 22334 4457899999999999999999998 7778888899999
Q ss_pred eeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 230 VRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 230 I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
++.++++|--.++++++.. ++|-..
T Consensus 343 vNgvslnP~mpilatssGq--r~f~~~ 367 (406)
T KOG2919|consen 343 VNGVSLNPIMPILATSSGQ--RIFKYP 367 (406)
T ss_pred ccceecCcccceeeeccCc--eeecCC
Confidence 9999999997777777654 455443
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.69 E-value=1.1e-17 Score=189.27 Aligned_cols=243 Identities=23% Similarity=0.444 Sum_probs=193.6
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
.+..+.+|.+.|+|+.|.. .++++++|++|..++||..+++.++....||.+.|+.++.+.+..++++++.|..|++|.
T Consensus 182 ~ikrLlgH~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHhhhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 3456789999999999998 889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE--------------EEEe-------------
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI--------------HTYK------------- 140 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i--------------~~l~------------- 140 (818)
+.++.++..+.+|.+.|++++|+|.. +.+.||++++||.+-.-.+ ..+.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999999999999999999999965 7778999999998711000 0000
Q ss_pred ---cCCCCeEEEEEcCCC-----------CEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCC-EEEEEeC
Q 003459 141 ---GHTRGVNAIRFTPDG-----------RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF-LLATGSA 205 (818)
Q Consensus 141 ---~h~~~V~~l~fspdg-----------~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~-~Lasgs~ 205 (818)
.....+.+++|...+ .+.+++-.+..+++|++.+|...+...+|...+..+.+||... ...+++.
T Consensus 337 d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~ 416 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGY 416 (1113)
T ss_pred CcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccC
Confidence 000112222332222 2333444566789999999999999999999999999999654 5567889
Q ss_pred CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003459 206 DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 206 Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
||...|||+-.|.++..+....+.+....|++||..+++..+- .+.|+..
T Consensus 417 dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEecc
Confidence 9999999999988877765446778888999999998876433 3444433
No 177
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=7.4e-16 Score=170.59 Aligned_cols=244 Identities=18% Similarity=0.352 Sum_probs=191.8
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83 (818)
Q Consensus 4 ~r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (818)
.....++.+++|.+.|+|++|+. +|..+++|+.|..|.+|...- +-+..+ .|.+.|.|+.|+|-...|++++-+ ..
T Consensus 41 ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~kl-EG~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dF 116 (1081)
T KOG1538|consen 41 SDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKL-EGILKY-SHNDAIQCMSFNPITHQLASCSLS-DF 116 (1081)
T ss_pred CCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccc-cceeee-ccCCeeeEeecCchHHHhhhcchh-hc
Confidence 45667899999999999999998 677899999999999998532 222333 499999999999999999888754 46
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe---cCCCCeEEEEEcCCC-----
Q 003459 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK---GHTRGVNAIRFTPDG----- 155 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~---~h~~~V~~l~fspdg----- 155 (818)
-+|..+.....+ .+ ....|.+++|..||.+|+.|-.+|+|.+-+-. ++....+. +.+.+|++++|+|..
T Consensus 117 glWS~~qK~V~K-~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 117 GLWSPEQKSVSK-HK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred cccChhhhhHHh-hh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence 789876543322 11 23568899999999999999999999998743 44333333 467899999999942
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003459 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTF 235 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~f 235 (818)
..+++.....++.+|.+. |+.+..-+.-.-...|+.+.++|.++..|+.|+.+++|- +.|-.+.+......+|+.++.
T Consensus 194 di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~ 271 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQA 271 (1081)
T ss_pred ceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEE
Confidence 467888888888888875 555554333334457899999999999999999999995 667778888778899999999
Q ss_pred eCCCCEEEEEECC-CEEEEEec
Q 003459 236 NPDGRTLLCGLHE-SLKVFSWE 256 (818)
Q Consensus 236 spdg~~Lasgs~d-~I~Vwd~~ 256 (818)
.|++++++.|..| +|.-|++-
T Consensus 272 ~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 272 KPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ccCCceEEEEEccCeeehhhhH
Confidence 9999999999776 47777654
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.4e-15 Score=147.60 Aligned_cols=231 Identities=16% Similarity=0.254 Sum_probs=176.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCC----------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEEC
Q 003459 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEE----------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI 130 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t----------~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl 130 (818)
.|..-+|+|.+++|++|..+|.|.++.+.+ ...+..+++|+++++.++|+ ..+|++|+ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence 355668999999999999999999998853 23455668999999999998 55677775 599999986
Q ss_pred CCCeE------EEEEe--cC-----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCC
Q 003459 131 RKKGC------IHTYK--GH-----TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE 197 (818)
Q Consensus 131 ~~~~~------i~~l~--~h-----~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg 197 (818)
+.... +...+ .| -..|+++...|..+-++.++.|+.++.||+.+|+...++++|+..|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 53221 11111 11 2358899999988888888899999999999999999999999999999885555
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCC----------CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceecccccc
Q 003459 198 FLLATGSADRTVKFWDLETFELIGSAGPE----------TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG 267 (818)
Q Consensus 198 ~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~----------~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~ 267 (818)
..+++|++||++++||+++++.+..+... ..+|-+++ -+..+|+||..-.+.+|.+...++..++...
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~t~vfpip 246 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSESTCVFPIP 246 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCceEEEecc
Confidence 67899999999999999999988876442 22344444 4566999998889999999999888777555
Q ss_pred ccceeeeeecCCCEEEEEEcCCeEEEEEecC
Q 003459 268 WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 268 ~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
.. +..+.+. .+.+..++..++|.-|.+..
T Consensus 247 a~-v~~v~F~-~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 247 AR-VHLVDFV-DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cc-eeEeeee-cceEEEeccccceeeeeecc
Confidence 43 2233333 35556666777888887654
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=1.5e-14 Score=144.42 Aligned_cols=230 Identities=19% Similarity=0.254 Sum_probs=172.7
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCC----------CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----------PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~----------~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
.|..-+|+| .+++|++|..+|.|.+..+.. ...+....+|.++|+.++|. ..+|++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp-~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISP-SKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCC-cceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 466678899 788999999999999998732 23445568999999999998 44566665 69999998
Q ss_pred CCCCeE------EEEE--cCC-----CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC
Q 003459 88 LEEAKI------VRTL--TGH-----RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154 (818)
Q Consensus 88 l~t~~~------v~~l--~~h-----~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd 154 (818)
+..... +..+ ..| -..|.++...|..+-++.++.|+.++-||+++|+..+++++|.+.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 754221 1111 112 236889999998888888889999999999999999999999999999998555
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEecCC----------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC
Q 003459 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE----------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG 224 (818)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~----------~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~ 224 (818)
...+++|++||++++||+++++.+..+.... ..|.+++ -++.+|++|+ ...+.+|.++..++...+.
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-Gp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-GPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-CCceeEEeccCCCceEEEe
Confidence 5579999999999999999999888775321 2244444 4566898886 4679999999988776664
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 225 PETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
- ...+..+.|..| ..|+.|-.+.+.-|.+.
T Consensus 245 i-pa~v~~v~F~~d-~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 245 I-PARVHLVDFVDD-CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred c-ccceeEeeeecc-eEEEeccccceeeeeec
Confidence 3 456788888744 34444434457777664
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=2e-15 Score=154.12 Aligned_cols=237 Identities=18% Similarity=0.325 Sum_probs=182.6
Q ss_pred cCCCCEEEEEEeeCCC----cEEEEEeCCCeEEEEECCCCceEE----Ee-----cCCCCCeEEEEEcC-CCCEEEEEEC
Q 003459 14 AHSSTVNCLKIGRKSS----RVLVTGGEDHKVNLWAIGKPNAIL----SL-----SGHTSGIDSVSFDS-SEVLVAAGAA 79 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~----~lLatgs~Dg~V~lWdl~~~~~i~----~l-----~~h~~~V~~l~fsp-dg~~Lasgs~ 79 (818)
.|.-+++.+-|.|+.. .+|||+++ .+++|.+...+... .+ ..+..++++..|+. +-++|.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D--~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSD--FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccC--eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 6888999999999542 46777653 69999986321111 11 23667899999976 6679999999
Q ss_pred CCeEEEEECCCCe---EEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEE-e--cCCCCeEEEEEc
Q 003459 80 SGTIKLWDLEEAK---IVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTY-K--GHTRGVNAIRFT 152 (818)
Q Consensus 80 DG~I~IWDl~t~~---~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l-~--~h~~~V~~l~fs 152 (818)
|.+..|||++++. +...+-.|+.+|..++|...+ +.|++.+.||.+++||++..+.-..+ . ....+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999873 355677899999999999855 47999999999999999976643332 2 224567788998
Q ss_pred C-CCCEEEEEECCC-eEEEEECCC-CeEEEEEecCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCe------EEEE
Q 003459 153 P-DGRWVVSGGEDN-TVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFE------LIGS 222 (818)
Q Consensus 153 p-dg~~L~sgs~Dg-~I~IwDl~t-~~~i~~~~~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~------~i~~ 222 (818)
+ |-+++++-..|+ .|.|.|++. ...+..++.|.+.|+.++|.|. ...|++++.|..+.+||+...- ++..
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPila 331 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILA 331 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhh
Confidence 7 567788766664 599999996 4578889999999999999997 6789999999999999997532 1222
Q ss_pred eCCCCCCeeEEEEeC-CCCEEEEEECCCEEEE
Q 003459 223 AGPETSGVRCLTFNP-DGRTLLCGLHESLKVF 253 (818)
Q Consensus 223 ~~~~~~~I~sl~fsp-dg~~Lasgs~d~I~Vw 253 (818)
+. ..+.|..+.|++ .+.+++++..+.+.+.
T Consensus 332 y~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 332 YT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 22 467799999995 5789999888776553
No 181
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.68 E-value=1.3e-14 Score=166.87 Aligned_cols=265 Identities=18% Similarity=0.238 Sum_probs=193.3
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeE--EEE----EcCCCCCeEEEEEeC
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAKI--VRT----LTGHRSNCISVDFHP 111 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~~~--v~~----l~~h~~~V~sv~fsp 111 (818)
+.+.||++...........-...|.|++|+| +..+++.|+.+|.|.+||+..+.. ... ...|..+|..+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 4799999977633333333578899999999 567888999999999999987654 222 235889999999977
Q ss_pred CCCE--EEEEECCCcEEEEECCCCeEE------EEEe------cCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC---
Q 003459 112 FGEF--FASGSLDTNLKIWDIRKKGCI------HTYK------GHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLT--- 173 (818)
Q Consensus 112 dg~~--Lasgs~Dg~I~IwDl~~~~~i------~~l~------~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~--- 173 (818)
+..- |++++.||.|..|+++.-... .... .....++++.|.+ +...+++|+++|.|.--+..
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5544 999999999999988743221 0111 1224588999988 56789999999998774332
Q ss_pred CCe-----EEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003459 174 AGK-----LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 174 t~~-----~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~-t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (818)
... ....+..|.++|+++.++|-+..++..+.|.+++||... ...++..+..+...+++++|||....+++..+
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 221 233556789999999999987666666669999999988 67777777777778999999998766654433
Q ss_pred --CCEEEEEecCCceecc--ccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 248 --ESLKVFSWEPIRCHDA--VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 248 --d~I~Vwd~~~~~~~~~--~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
+.+.+||+.......+ .......+....+ ++|++|++|...|.+.+|++...-..+
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~ 522 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAVP 522 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhhcc
Confidence 4699999876544333 2333333444444 559999999999999999997655444
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.68 E-value=3.2e-15 Score=158.76 Aligned_cols=247 Identities=21% Similarity=0.401 Sum_probs=184.1
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--------C--------CceEEEecCCCCCeEEEEEcCCCC
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--------K--------PNAILSLSGHTSGIDSVSFDSSEV 72 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~--------~--------~~~i~~l~~h~~~V~~l~fspdg~ 72 (818)
+..+..|...|+++.|+| ++.+||+|+++|.|.+|... + -...+.+.+|...|..++|++++.
T Consensus 58 ~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~ 136 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN 136 (434)
T ss_pred eecccCCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc
Confidence 456788999999999999 77899999999999999765 2 123445678999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe--------c---
Q 003459 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--------G--- 141 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~--------~--- 141 (818)
++++++.|..+++||+..|+....+..|...+..++|.|-++++++-+.|...+.+.+...+.+.... .
T Consensus 137 ~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 216 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER 216 (434)
T ss_pred eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence 99999999999999999999999999999999999999999999999999877777765443332221 0
Q ss_pred --------C----CCCeEEEEEcCCCCEEEEEEC----CC-----eEEEEECCC-CeEEEEEecCCCCEEEEEEeC----
Q 003459 142 --------H----TRGVNAIRFTPDGRWVVSGGE----DN-----TVKLWDLTA-GKLLHDFKCHEGQIQCIDFHP---- 195 (818)
Q Consensus 142 --------h----~~~V~~l~fspdg~~L~sgs~----Dg-----~I~IwDl~t-~~~i~~~~~h~~~I~sv~fsp---- 195 (818)
| ......++|+|+|.+|++... ++ ..++|+-.. .+++..+.+...+...+.|+|
T Consensus 217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence 1 123456789999998887532 22 234444321 233444444444555555554
Q ss_pred --------------CCCEEEEEeCCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecC
Q 003459 196 --------------HEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEP 257 (818)
Q Consensus 196 --------------dg~~Lasgs~Dg~I~IwDl~t~~~i~~~-~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~ 257 (818)
-+-.+|.++ ...|+|||.++..++... .-|-..|++++|++||.+|+..+.|+ ..+..+++
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~ 373 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEP 373 (434)
T ss_pred eccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcc
Confidence 233455665 457999999998777654 45677899999999999999887775 44444443
No 183
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.67 E-value=2.1e-15 Score=159.42 Aligned_cols=205 Identities=21% Similarity=0.403 Sum_probs=168.3
Q ss_pred EecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------eEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCc
Q 003459 54 SLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEA-------KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTN 124 (818)
Q Consensus 54 ~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~-------~~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~ 124 (818)
.+.||+++|..++|+| +...||+|+.|.+|.||.+..+ +++..+.+|...|-.++|+|.. +.|++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 5678999999999999998654 4577889999999999999976 47889999999
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC-EEEEEEeCCCCEEEEE
Q 003459 125 LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPHEFLLATG 203 (818)
Q Consensus 125 I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~-I~sv~fspdg~~Lasg 203 (818)
|.+||+.+++.+.++. |...|+++.|+.||.+|++++.|..|+|||.++++.+.+-.+|.+. -..+.|-.+|.++-+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999998888 9999999999999999999999999999999999999998888763 4556688888855555
Q ss_pred e---CCCeEEEEECCCCeE---EEEeCCCCCCeeEEEEeCCCCEEEEEE--CCCEEEEEecCCce
Q 003459 204 S---ADRTVKFWDLETFEL---IGSAGPETSGVRCLTFNPDGRTLLCGL--HESLKVFSWEPIRC 260 (818)
Q Consensus 204 s---~Dg~I~IwDl~t~~~---i~~~~~~~~~I~sl~fspdg~~Lasgs--~d~I~Vwd~~~~~~ 260 (818)
- .+.++-+||..+.+. +..+. ...+|.---|.+|...++.++ ++.|+.|.+.....
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred cccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 3 467899999876543 22232 244566666888888877543 33699999877654
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=4.4e-15 Score=170.65 Aligned_cols=244 Identities=19% Similarity=0.269 Sum_probs=186.8
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce--EEE----ecCCCCCeEEEEEcCCCC--EEEEEECCCeEEE
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--ILS----LSGHTSGIDSVSFDSSEV--LVAAGAASGTIKL 85 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~--i~~----l~~h~~~V~~l~fspdg~--~Lasgs~DG~I~I 85 (818)
.-...|.|++|+|.+..+++.|..+|.|.+||+..+.. ... ...|..++..+.|..+.. -|++++.||.|..
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 45678999999999999999999999999999976554 222 235899999999966444 4889999999999
Q ss_pred EECCCCeE-E-----EEEc------CCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECC---CCe-----EEEEEecCCC
Q 003459 86 WDLEEAKI-V-----RTLT------GHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIR---KKG-----CIHTYKGHTR 144 (818)
Q Consensus 86 WDl~t~~~-v-----~~l~------~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~---~~~-----~i~~l~~h~~ 144 (818)
|+++.-.. . .... .....++++.|.+.. ..|++|+.+|.|+--+-. ... ....+..|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 98764322 1 1111 122367899998855 479999999998873322 221 2335567889
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEecCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCC--CeEE
Q 003459 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLT-AGKLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLET--FELI 220 (818)
Q Consensus 145 ~V~~l~fspdg~~L~sgs~Dg~I~IwDl~-t~~~i~~~~~h~~~I~sv~fspdg-~~Lasgs~Dg~I~IwDl~t--~~~i 220 (818)
+|+++.++|-+..++..+.|.+++||... ...++..+..+...+++++|+|-. ..++++..||.|.+||+.. ..++
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 99999999976665555559999999988 677888888788889999999974 6788888899999999965 3445
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecC
Q 003459 221 GSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEP 257 (818)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~ 257 (818)
.+..........+.|++.|+.|++|..+| +.+|++..
T Consensus 480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 55555566678888999999999998775 89998853
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=5.4e-14 Score=155.09 Aligned_cols=246 Identities=12% Similarity=0.210 Sum_probs=167.3
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-Cce--EEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNA--ILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTI 83 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~-~~~--i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I 83 (818)
.++.+. +.+....++++|++..+++++..++.|.+|++.. +.. ..... .......++|+|++++|++++. ++.|
T Consensus 27 ~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v 104 (330)
T PRK11028 27 LLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCV 104 (330)
T ss_pred eeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeE
Confidence 344443 4566788999995444444445688999999863 332 22222 2345678999999998888765 8899
Q ss_pred EEEECCC-C---eEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCCeEEEE-----Ee-cCCCCeEEEEEc
Q 003459 84 KLWDLEE-A---KIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIHT-----YK-GHTRGVNAIRFT 152 (818)
Q Consensus 84 ~IWDl~t-~---~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~~~i~~-----l~-~h~~~V~~l~fs 152 (818)
.+|++.+ + +.+..+. +.....+++++|+++++++++ .++.|.+||+.+...+.. .. ........+.|+
T Consensus 105 ~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~ 183 (330)
T PRK11028 105 SVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH 183 (330)
T ss_pred EEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence 9999974 3 2233333 334567789999999886655 568999999976432211 11 123446789999
Q ss_pred CCCCEEEEEEC-CCeEEEEECCC--C--eEEEEEecCC------CCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCe--
Q 003459 153 PDGRWVVSGGE-DNTVKLWDLTA--G--KLLHDFKCHE------GQIQCIDFHPHEFLLATGSA-DRTVKFWDLETFE-- 218 (818)
Q Consensus 153 pdg~~L~sgs~-Dg~I~IwDl~t--~--~~i~~~~~h~------~~I~sv~fspdg~~Lasgs~-Dg~I~IwDl~t~~-- 218 (818)
|+|++++++.. ++.|.+||+.. + +.+..+..+. .....+.|+|++++|+++.. ++.|.+|++....
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 99999988876 89999999973 3 2344433211 12346889999999988864 7899999985432
Q ss_pred --EEEEeCCCCCCeeEEEEeCCCCEEEEEEC--CCEEEEEecC
Q 003459 219 --LIGSAGPETSGVRCLTFNPDGRTLLCGLH--ESLKVFSWEP 257 (818)
Q Consensus 219 --~i~~~~~~~~~I~sl~fspdg~~Lasgs~--d~I~Vwd~~~ 257 (818)
.+..+.. ....+.+.|+|||++|+++.. +.+.+|.++.
T Consensus 264 ~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 264 LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 2333322 234578999999999998764 4699998864
No 186
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=1.8e-14 Score=167.12 Aligned_cols=284 Identities=16% Similarity=0.292 Sum_probs=206.7
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC---CCCeEEEEEcC--CCCEEEEEECCCeEEEEECC--
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH---TSGIDSVSFDS--SEVLVAAGAASGTIKLWDLE-- 89 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h---~~~V~~l~fsp--dg~~Lasgs~DG~I~IWDl~-- 89 (818)
..-..+.|+| -...++++++.-.|.|||.+.++.+..|..+ ...|+.+.+-. |..++++|+.||.|+||+--
T Consensus 1065 ~~pk~~~~hp-f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1065 QPPKTLKFHP-FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCceeeecC-CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 3456678888 5567888887889999999999998877644 35688888854 55689999999999999742
Q ss_pred ---CCeEEEEEcC-------CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEcC-CCCE
Q 003459 90 ---EAKIVRTLTG-------HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFTP-DGRW 157 (818)
Q Consensus 90 ---t~~~v~~l~~-------h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~-h~~~V~~l~fsp-dg~~ 157 (818)
..+.+..+.+ ..+.-.-++|.....+|++++.-..|+|||.....++..+.. ....|+++.-+- .|+.
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 2234433322 112224577887777888887788999999998877776643 334466655432 5799
Q ss_pred EEEEECCCeEEEEECCCCe---EEEEEecCCCC--EEEEEEeCCCCE-EEEEeCCCeEEEEECCCCeEEE--EeCCC---
Q 003459 158 VVSGGEDNTVKLWDLTAGK---LLHDFKCHEGQ--IQCIDFHPHEFL-LATGSADRTVKFWDLETFELIG--SAGPE--- 226 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~~--I~sv~fspdg~~-Lasgs~Dg~I~IwDl~t~~~i~--~~~~~--- 226 (818)
+++|..||.|++||.+... .+..++.|... |..+.+.++|.- |++|+.||.|++||++...... .+..|
T Consensus 1224 i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y 1303 (1387)
T KOG1517|consen 1224 IAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY 1303 (1387)
T ss_pred EEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc
Confidence 9999999999999998643 46667778776 999999997765 9999999999999999732211 12222
Q ss_pred CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceecc------ccccccceeeeeecCCC-EEEEEEcCCeEEEEEecCC
Q 003459 227 TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDA------VDVGWSRLSDLNVHEGK-LLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~------~~~~~~~v~~l~~~~g~-lLatg~~Dg~V~IWdvd~~ 299 (818)
.+.++++..+++...+|+|+...|+||+......-.. ..-.-....++.+|.-+ ++++|+.|..|.||...-.
T Consensus 1304 Gs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1304 GSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred CccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 2358999999999999999988899999875432111 11112234677777654 5689999999999987655
Q ss_pred Cc
Q 003459 300 RI 301 (818)
Q Consensus 300 ~~ 301 (818)
++
T Consensus 1384 ~~ 1385 (1387)
T KOG1517|consen 1384 RL 1385 (1387)
T ss_pred CC
Confidence 43
No 187
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=8.9e-15 Score=159.25 Aligned_cols=207 Identities=19% Similarity=0.310 Sum_probs=171.8
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDF 109 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~f 109 (818)
..|+.++.||.+.+.+ ..++.-..+..|.+.|.+-.|+++|.-|++++.||.|++|. ++|-...++......|.|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 4688889999999987 45777778889999999999999999999999999999999 556555555567788999999
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEE
Q 003459 110 HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQ 189 (818)
Q Consensus 110 spdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~ 189 (818)
.|+.+.++.+. .+.+.|=-+.-...+..++.|.+-|.++.|++..+.+++|++|-..++||.. |..+..-..|+.+|+
T Consensus 154 ~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 154 APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAIT 231 (737)
T ss_pred CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcccee
Confidence 99988776663 4667777777777788899999999999999999999999999999999965 777777778999999
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEE
Q 003459 190 CIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVF 253 (818)
Q Consensus 190 sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vw 253 (818)
+++|+|+ ..++.++. ++++ .-.+..+.|..++|++||..+++|...+..++
T Consensus 232 Sva~npd-~~~~v~S~-nt~R-----------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSY-NTAR-----------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeccc-cceeeeee-eeee-----------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 9999999 56666653 3444 22345677899999999999999987764443
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.9e-14 Score=165.54 Aligned_cols=289 Identities=17% Similarity=0.286 Sum_probs=193.9
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEEC-C---CCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-G---KPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl-~---~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
..|.-.++|.+++| .++++|+|..||.|.+|.- . .......+.-|...|.++.|+++|.+|++|+..|.+.+|.+
T Consensus 202 ~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 202 VHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 35777799999999 8899999999999999963 2 12234456678899999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-----------CCCCeEEEEEcCCCCE
Q 003459 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-----------HTRGVNAIRFTPDGRW 157 (818)
Q Consensus 89 ~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~-----------h~~~V~~l~fspdg~~ 157 (818)
++++ .+-+..-.+.|..+.++||+.+.+....|..|.+....+.....++.+ ..+-.+.++++|.-+.
T Consensus 281 ~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 281 ETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred cCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 9998 455666788999999999999999999999999987644322222111 1222334444443334
Q ss_pred EEEEECCCeEEEEECCCCeEEE----------------------------------------------------------
Q 003459 158 VVSGGEDNTVKLWDLTAGKLLH---------------------------------------------------------- 179 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~---------------------------------------------------------- 179 (818)
++-.+..|.|.+||+-+...+.
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 4444444444444443221111
Q ss_pred ---------EE-ecCCCCEEEEEEeC-C-CCEEEEEeCCCeEEEEECCC----------CeEEEEeCCCCCCeeEEEEeC
Q 003459 180 ---------DF-KCHEGQIQCIDFHP-H-EFLLATGSADRTVKFWDLET----------FELIGSAGPETSGVRCLTFNP 237 (818)
Q Consensus 180 ---------~~-~~h~~~I~sv~fsp-d-g~~Lasgs~Dg~I~IwDl~t----------~~~i~~~~~~~~~I~sl~fsp 237 (818)
.+ ..|...+...+|.+ . ....++++.||.++||-+.. +.+...-.-|..++..++|+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~ 519 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQ 519 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcC
Confidence 11 13444444444433 2 23788899999999998833 233333334778899999999
Q ss_pred CCCEEEEEECCCEEEEEecC-Cceeccccccccceeeeee---cCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 238 DGRTLLCGLHESLKVFSWEP-IRCHDAVDVGWSRLSDLNV---HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 238 dg~~Lasgs~d~I~Vwd~~~-~~~~~~~~~~~~~v~~l~~---~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
||..|+++.++.|.+||+.+ ...........-++..+.. ......+.......+.+|++-...+.-
T Consensus 520 dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 520 DGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred CCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhhhcccccccceeeccCceEehHhhhhhheec
Confidence 99999999999999999987 3332222111111111111 112334455677889999887776554
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=3e-15 Score=151.12 Aligned_cols=243 Identities=15% Similarity=0.295 Sum_probs=186.7
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
..+.+|.+.|+|+.|-. ++ +|.+|..-|.|.+|++.+......+. .|...|+.+..-|++ .+.+-+.|+.+.+|++
T Consensus 8 fvLRp~~~~v~s~~fqa-~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqgRd~~L~lw~i 84 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQA-NE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQGRDPLLILWTI 84 (323)
T ss_pred eEeccccchheehhhcc-ch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcCCCceEEEEEc
Confidence 34569999999999986 44 48999999999999999888888887 577789999988874 5667889999999998
Q ss_pred CCCeEEEE-------------------------Ec----------------------------CCCCCeEEEEEeC-CCC
Q 003459 89 EEAKIVRT-------------------------LT----------------------------GHRSNCISVDFHP-FGE 114 (818)
Q Consensus 89 ~t~~~v~~-------------------------l~----------------------------~h~~~V~sv~fsp-dg~ 114 (818)
.-+..+.. +. +..+.+.+..|.- ++.
T Consensus 85 a~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s 164 (323)
T KOG0322|consen 85 AYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGS 164 (323)
T ss_pred cCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccc
Confidence 64211100 00 0112333444322 233
Q ss_pred --EEEEEECCCcEEEEECCCCe----------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eE--E
Q 003459 115 --FFASGSLDTNLKIWDIRKKG----------CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG--KL--L 178 (818)
Q Consensus 115 --~Lasgs~Dg~I~IwDl~~~~----------~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~--~~--i 178 (818)
++++|..+|.+.+||+.++. .+..+..|..+|.++.|.+.-..=++|+.+..+..|.+... .+ -
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~ 244 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR 244 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc
Confidence 47778889999999999873 33444578999999999886556677788888888887643 21 1
Q ss_pred EEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003459 179 HDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 179 ~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
.+.......|..+..-||++.+|+++.|+.|++|..++.+++..+..|...|.+++|+||...+++++.| .|.+|++
T Consensus 245 ~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 245 KEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 2222334568889999999999999999999999999999999999999999999999999999988877 5999975
No 190
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=6.3e-14 Score=165.03 Aligned_cols=253 Identities=19% Similarity=0.292 Sum_probs=182.3
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-------CceEEEecCCCCCeEEEEEcCCCCEEEE
Q 003459 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-------PNAILSLSGHTSGIDSVSFDSSEVLVAA 76 (818)
Q Consensus 4 ~r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~-------~~~i~~l~~h~~~V~~l~fspdg~~Las 76 (818)
.++..+..+..|...|..++.++..+.+|++|+.||+|++|+..+ .+...++......+.++.+.+.+..+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 456778889999999999999987778999999999999999842 1233444445778999999999999999
Q ss_pred EECCCeEEEEECCCCe-------EEEEEcCCC--CCeEEEEEeCC-CC-EEEEEECCCcEEEEECCCCeEEEEEec--CC
Q 003459 77 GAASGTIKLWDLEEAK-------IVRTLTGHR--SNCISVDFHPF-GE-FFASGSLDTNLKIWDIRKKGCIHTYKG--HT 143 (818)
Q Consensus 77 gs~DG~I~IWDl~t~~-------~v~~l~~h~--~~V~sv~fspd-g~-~Lasgs~Dg~I~IwDl~~~~~i~~l~~--h~ 143 (818)
++.||.|++.+++... ..+..+.+. ..+..-+|... +. .++.+...+.|..||++.....++++. ..
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 9999999999987621 122222222 22333344332 23 688888899999999998776665542 34
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEeCC---CCEEEEEe--CCCeEEEEECCCC
Q 003459 144 RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHPH---EFLLATGS--ADRTVKFWDLETF 217 (818)
Q Consensus 144 ~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sv~fspd---g~~Lasgs--~Dg~I~IwDl~t~ 217 (818)
+.|++++.+|.+.|++.|+..|.+.+||+|-+.++..+. .+..+|..+..+|- ....++++ ..+.|.+|++.+|
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 679999999999999999999999999999998888776 34577888887774 34555444 4778999999988
Q ss_pred eEEEEeCCC--------------------CCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 218 ELIGSAGPE--------------------TSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 218 ~~i~~~~~~--------------------~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
..-..+... ...+.+..-.++|-.+..|++..|+.||..
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 654443211 111233333334444444556689999864
No 191
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=1e-15 Score=164.62 Aligned_cols=230 Identities=19% Similarity=0.319 Sum_probs=202.4
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (818)
.-..+.|.. +|+.|+.|+.-|.|-.+|+.+.+....+.. ...|.++.|-.+..++|++ ....++||| ..|..+..+
T Consensus 131 GPY~~~ytr-nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTR-NGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCL 206 (545)
T ss_pred CCeeeeecC-CccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeeh
Confidence 446677876 788899999999999999999998888873 5678999998888888776 677899999 567788888
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (818)
Q Consensus 98 ~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (818)
..| ..|..+.|.|..-+|++++..|.++--|+.+|+.+..+....+.+..++-+|-...+-+|...|+|.+|.....++
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP 285 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP 285 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence 855 5688999999998999999999999999999999999988888999999999988999999999999999999999
Q ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEE
Q 003459 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (818)
Q Consensus 178 i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (818)
+..+.+|.++|.++++.++|.|+++.+.|..++|||+++...+.++.. ..+...++||..| +|+++..+.+.||.
T Consensus 286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGDHVQIWK 360 (545)
T ss_pred HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeecCCeeeeeh
Confidence 999999999999999999999999999999999999999988777765 4567888998665 77888778899994
No 192
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.61 E-value=1.5e-14 Score=147.61 Aligned_cols=200 Identities=23% Similarity=0.424 Sum_probs=158.2
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-EEEec-----CCCCCeEEEEEcC--CCCEEEEEECCCeEEE
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-ILSLS-----GHTSGIDSVSFDS--SEVLVAAGAASGTIKL 85 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~-i~~l~-----~h~~~V~~l~fsp--dg~~Lasgs~DG~I~I 85 (818)
.|-+.|.|+.|.|++. -+++-. |..|.+|++..+.. ...+. +|....++-+|+| +++.+++. .|+++..
T Consensus 121 eavg~i~cvew~Pns~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~ 197 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF 197 (370)
T ss_pred HHhCceeeEEEcCCCC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEE
Confidence 4556899999999544 455554 78899999976655 33332 3566788889988 78888775 5899999
Q ss_pred EECCCCeEEEEEc-CCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 003459 86 WDLEEAKIVRTLT-GHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTP-DGRWVVSG 161 (818)
Q Consensus 86 WDl~t~~~v~~l~-~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~-~~~i~~l~~h~~~V~~l~fsp-dg~~L~sg 161 (818)
||+++.+....+. .|...|..+.|+|+.+ +|++|+.||.|+|||.+. ..+++.+.+|...|+++.|+| ...++++|
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 9999887766664 6888899999999877 588999999999999985 457888999999999999999 45678899
Q ss_pred ECCCeEEEEECCCC-----------------------------eEEEEEecCCCCEEEEEEeCCC-CEEEEEeCCCeEEE
Q 003459 162 GEDNTVKLWDLTAG-----------------------------KLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKF 211 (818)
Q Consensus 162 s~Dg~I~IwDl~t~-----------------------------~~i~~~~~h~~~I~sv~fspdg-~~Lasgs~Dg~I~I 211 (818)
+.|..|.+|....- ..+.++..|+..|++++|+.-. -++|+-+.||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 99999999975321 1344677799999999999854 46677889999988
Q ss_pred EECCC
Q 003459 212 WDLET 216 (818)
Q Consensus 212 wDl~t 216 (818)
=.+..
T Consensus 358 s~V~r 362 (370)
T KOG1007|consen 358 SSVPR 362 (370)
T ss_pred ecCCh
Confidence 76643
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=6.3e-14 Score=145.16 Aligned_cols=240 Identities=16% Similarity=0.201 Sum_probs=183.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC-CC
Q 003459 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KK 133 (818)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~---~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~-~~ 133 (818)
...+|+|.+|++|+..+|++.....|.||..... +...++..|+..|+.++|.|..+.|++++.|..-++|... .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 4578999999999999999999999999998655 4678889999999999999999999999999999999983 33
Q ss_pred --eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE----EEecCCCCEEEEEEeCCCCEEEEEeCCC
Q 003459 134 --GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH----DFKCHEGQIQCIDFHPHEFLLATGSADR 207 (818)
Q Consensus 134 --~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~----~~~~h~~~I~sv~fspdg~~Lasgs~Dg 207 (818)
++...+..++..++++.|+|.++.|++|+....|.||-+....--. .-+.+.+.|+++.|+|++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 3444556688999999999999999999999999999876543221 1234567899999999999999999999
Q ss_pred eEEEEECC------------------CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc-eecccccc
Q 003459 208 TVKFWDLE------------------TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR-CHDAVDVG 267 (818)
Q Consensus 208 ~I~IwDl~------------------t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~-~~~~~~~~ 267 (818)
..++|..- -|+++..+....+.+..+.|+|+|..|+-.+.+ .+.+-|..... ....+...
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 99998631 134444555567889999999999999965555 56666655432 33334444
Q ss_pred ccceeeeeecCCCEEEEEEcCCeEEEEEec
Q 003459 268 WSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 268 ~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd 297 (818)
.-++..+.+-....++++++|..=.++..+
T Consensus 249 ~lP~ls~~~ise~~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 249 QLPLLSVSWISENSVVAAGYDCGPVLFVTD 278 (361)
T ss_pred cCCceeeEeecCCceeecCCCCCceEEEec
Confidence 455555555555555666666444444433
No 194
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.61 E-value=9.5e-15 Score=147.54 Aligned_cols=246 Identities=19% Similarity=0.347 Sum_probs=189.1
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEE
Q 003459 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKI 127 (818)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~-~h~~~V~sv~fspdg~~Lasgs~Dg~I~I 127 (818)
+.+...+.+|.+.|+++.|..+++ |++|...|.|++|++.+......+. .|...|+.+.-.|+ ..+.+-+.|+.+.+
T Consensus 4 PdP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 4 PDPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred CCCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 345677789999999999988776 7799999999999999998888888 46677888888886 56778889999999
Q ss_pred EECCCCeEEEE--------------Ee---------------------------------------cCCCCeEEEEEcC-
Q 003459 128 WDIRKKGCIHT--------------YK---------------------------------------GHTRGVNAIRFTP- 153 (818)
Q Consensus 128 wDl~~~~~i~~--------------l~---------------------------------------~h~~~V~~l~fsp- 153 (818)
|++.....+.. +- +..+.+.|..+.-
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~ 161 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA 161 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc
Confidence 99865221110 00 0122344444322
Q ss_pred CC--CEEEEEECCCeEEEEECCCCeEE----------EEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--eE
Q 003459 154 DG--RWVVSGGEDNTVKLWDLTAGKLL----------HDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF--EL 219 (818)
Q Consensus 154 dg--~~L~sgs~Dg~I~IwDl~t~~~i----------~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~--~~ 219 (818)
++ -++++|.++|.+.+||+.++..+ .....|..+|.++.|.+.-..=++|+.+..+..|.++.. .+
T Consensus 162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl 241 (323)
T KOG0322|consen 162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL 241 (323)
T ss_pred ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence 22 25678889999999999998433 334468899999999886555677888888889987642 22
Q ss_pred --EEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeeecCC-CEEEEEEcCCeEEEEE
Q 003459 220 --IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEG-KLLGCSYNQSCVGVWV 295 (818)
Q Consensus 220 --i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g-~lLatg~~Dg~V~IWd 295 (818)
-........+|..+.+-||++.+++++.| .|+||.|.+.+.+.++..+...+.++.++.+ .++|.++.|++|.+|+
T Consensus 242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 22233345678999999999999987766 6999999999999999999998999988655 9999999999999998
Q ss_pred e
Q 003459 296 V 296 (818)
Q Consensus 296 v 296 (818)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 5
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=4.1e-14 Score=161.89 Aligned_cols=219 Identities=15% Similarity=0.143 Sum_probs=156.5
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCC---CeEEEEECCCCce--EEEecCCCCCeEEEEEcCCCCEEEEEE-CCCe
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGED---HKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGT 82 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~D---g~V~lWdl~~~~~--i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~ 82 (818)
.+.+..|...|.+.+|+|++.+ |+.++.+ ..|++||+.+++. +..+.+| ...++|+|||+.|+.+. .+|.
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~-la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSK-LAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred ceEeccCCCccccceEcCCCCE-EEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 3456778888999999996554 5554432 4799999987753 3333443 34689999999888764 5776
Q ss_pred EEE--EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEE
Q 003459 83 IKL--WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWV 158 (818)
Q Consensus 83 I~I--WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~fspdg~~L 158 (818)
+.| ||+.+++. ..+..+...+....|+|+|+.|+.++ .+|...||++... .....+ .+.. .+..|+|||++|
T Consensus 272 ~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~i 347 (429)
T PRK01742 272 LNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTL 347 (429)
T ss_pred EEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEE
Confidence 555 56666654 45566777788999999999877655 5677888876432 222223 3443 457899999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC--CCCeEEEEeCCCCCCeeEEEEe
Q 003459 159 VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL--ETFELIGSAGPETSGVRCLTFN 236 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl--~t~~~i~~~~~~~~~I~sl~fs 236 (818)
+.++.++ +.+||+.+++.......+ ....+.|+|+|.+|+.++.++.+.+|++ .+++.+..+..+.+.+...+|+
T Consensus 348 a~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~ws 424 (429)
T PRK01742 348 VMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWS 424 (429)
T ss_pred EEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccC
Confidence 9887765 566999988754332222 3356789999999999999998888875 3577778887777888899999
Q ss_pred CC
Q 003459 237 PD 238 (818)
Q Consensus 237 pd 238 (818)
|-
T Consensus 425 p~ 426 (429)
T PRK01742 425 PY 426 (429)
T ss_pred CC
Confidence 74
No 196
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=2.7e-14 Score=156.00 Aligned_cols=242 Identities=17% Similarity=0.302 Sum_probs=169.5
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEc----CCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCC-----------
Q 003459 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLT----GHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK----------- 132 (818)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t~~~v~~l~----~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~----------- 132 (818)
+.+--++.|-..|.|.+.|....+..+.+. -.+..|+|+.|-|.++ .|+++-.+|.+++||...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 456678888889999999976633322222 1346899999999665 677788899999997631
Q ss_pred ---Ce--------------EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeC
Q 003459 133 ---KG--------------CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP 195 (818)
Q Consensus 133 ---~~--------------~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fsp 195 (818)
+. ++..+.--.+.|..++|+|||++||+.+.||.++|||..+.+++..++..-+...|++|+|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 11 1111112245788999999999999999999999999999888888887788999999999
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEE--------ECCCEEEEEecCC---ceeccc
Q 003459 196 HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG--------LHESLKVFSWEPI---RCHDAV 264 (818)
Q Consensus 196 dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasg--------s~d~I~Vwd~~~~---~~~~~~ 264 (818)
||++|++|++|-.|.||.+...+.+..-++|..+|..++|+| |..+. .++. .=++... +.-...
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp---ytt~~ee~~~~~~~~~~--~~~~~~~~~~r~~~~~ 417 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP---YTTSTEEWNNFSGMDST--FSDVAHDFEIRANGTG 417 (636)
T ss_pred CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc---ccccccccccccccccc--ccchhcccccccCCCC
Confidence 999999999999999999999999999999999999999997 22221 1111 0000000 000000
Q ss_pred cccccceeeeeec--CCCEEEEEEcCCeEEEEEecCCCceeeeecccceeccccc
Q 003459 265 DVGWSRLSDLNVH--EGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSE 317 (818)
Q Consensus 265 ~~~~~~v~~l~~~--~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~~~~~~~~~~ 317 (818)
.....++..+.-. ....+.+.+.|..+.+||+....+.+ .+....++-|.+
T Consensus 418 S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~--~~p~~~~R~~~n 470 (636)
T KOG2394|consen 418 SAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP--HPPLYRLRRHPN 470 (636)
T ss_pred CcCCCcccccccccceEEEeecccccceEEEEecchhhccc--CCchhhhhcCCC
Confidence 1111112222111 23567889999999999999988777 333334444443
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=7e-15 Score=161.76 Aligned_cols=221 Identities=20% Similarity=0.328 Sum_probs=168.2
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC------C----ceEEEecCCCCCeEEEEEcCCCCE
Q 003459 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK------P----NAILSLSGHTSGIDSVSFDSSEVL 73 (818)
Q Consensus 4 ~r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~------~----~~i~~l~~h~~~V~~l~fspdg~~ 73 (818)
+...++.+|.+|.++|.|+++.+ ++..+++|+.||+|+.|++.. . .....+.||++.|+.++++.....
T Consensus 332 ~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 332 KDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred cceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccc
Confidence 44567899999999999999998 778899999999999996531 1 233467799999999999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEcCCC--CCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEec-------CC
Q 003459 74 VAAGAASGTIKLWDLEEAKIVRTLTGHR--SNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKG-------HT 143 (818)
Q Consensus 74 Lasgs~DG~I~IWDl~t~~~v~~l~~h~--~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~~-------h~ 143 (818)
|++++.||++++|+...... .++.... +.-.+++|..... +.++...-+.--+++......+..+.. ..
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~ 489 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRY 489 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCccccc
Confidence 99999999999999876665 4444322 2234555543221 222222223223333333333333321 12
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 144 RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 144 ~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
..+.-+.++|.+.+.+++..|+.|+++|..+++.++....|...++++++.|+|.+|++|+.||.+++|.+....++...
T Consensus 490 ~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 490 PQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred CccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 34778889999999999999999999999999999999999999999999999999999999999999999887777665
Q ss_pred CCC
Q 003459 224 GPE 226 (818)
Q Consensus 224 ~~~ 226 (818)
..|
T Consensus 570 ~~~ 572 (577)
T KOG0642|consen 570 TAH 572 (577)
T ss_pred ccc
Confidence 554
No 198
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=3.6e-14 Score=148.02 Aligned_cols=190 Identities=20% Similarity=0.347 Sum_probs=152.1
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeC--CCCEEEEEECCCcEEEEECCCCeEEEE--EecCC-CCe
Q 003459 72 VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHT--YKGHT-RGV 146 (818)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~i~~--l~~h~-~~V 146 (818)
..+|++...|.|++||..+++.+..++++...+..+.|.. ....+.+|+.||+|++||++....... +..+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5788999999999999999999999999999999999987 356799999999999999997765443 34444 456
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEECCCCeE-EEEE-ecCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCe-
Q 003459 147 NAIRFTPDGRWVVSGGE----DNTVKLWDLTAGKL-LHDF-KCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFE- 218 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~----Dg~I~IwDl~t~~~-i~~~-~~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~- 218 (818)
.|++..-.++.+++|.. +..|.+||+|..+. +..+ ..|...|+++.|+|. .++|++|+.||.|.+||++.-.
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 67776667778887753 67899999998766 5444 469999999999995 6799999999999999997642
Q ss_pred --EEEEeCCCCCCeeEEEEeCCC--CEEEEEECCCEEEEEecCCcee
Q 003459 219 --LIGSAGPETSGVRCLTFNPDG--RTLLCGLHESLKVFSWEPIRCH 261 (818)
Q Consensus 219 --~i~~~~~~~~~I~sl~fspdg--~~Lasgs~d~I~Vwd~~~~~~~ 261 (818)
.+.....+...|.++.|..++ +.......++..+|+|+.+.+.
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChh
Confidence 122233456679999999988 6555566778999999987653
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=8.9e-14 Score=144.05 Aligned_cols=236 Identities=16% Similarity=0.237 Sum_probs=188.2
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~---~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
+.|.--..+|+|.+|++ +...+|++.....|.||..... +..+++..|...|++|+|+|..+.|++++.|..-++|
T Consensus 4 ~~~~~~~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred EEeeeccCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 34555568999999999 5667899989999999987544 4678889999999999999999999999999999999
Q ss_pred EC-CCC--eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE----EEEecCCCCeEEEEEcCCCCEEE
Q 003459 87 DL-EEA--KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI----HTYKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 87 Dl-~t~--~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i----~~l~~h~~~V~~l~fspdg~~L~ 159 (818)
.. ..+ ++...+..+....+++.|+|.++.|++|+....|.+|-++...-- +.-+.+...|.++.|+|++-+|+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 98 333 344555668899999999999999999999999999987654321 12245678899999999999999
Q ss_pred EEECCCeEEEEECC-----C-------------CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe-EE
Q 003459 160 SGGEDNTVKLWDLT-----A-------------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE-LI 220 (818)
Q Consensus 160 sgs~Dg~I~IwDl~-----t-------------~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~-~i 220 (818)
+|+.|+..++|..- . |.++.++....+.+..+.|+|.|..|+-.+.|..+.+-|..... .+
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v 242 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERV 242 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhc
Confidence 99999999988642 1 23455554556789999999999999999999999999987664 34
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 221 GSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
.......-+..++.|-.+...+++|.
T Consensus 243 ~~~~~~~lP~ls~~~ise~~vv~ag~ 268 (361)
T KOG1523|consen 243 QSVATAQLPLLSVSWISENSVVAAGY 268 (361)
T ss_pred cchhhccCCceeeEeecCCceeecCC
Confidence 44444446778888877665555553
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=2.1e-13 Score=156.05 Aligned_cols=207 Identities=14% Similarity=0.108 Sum_probs=147.2
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeE--EEEEcCCCCCeEEEEEeCC
Q 003459 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKI--VRTLTGHRSNCISVDFHPF 112 (818)
Q Consensus 38 Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~--v~~l~~h~~~V~sv~fspd 112 (818)
+..|.+||..... ...+..|...+....|+|+|+.|+.++.+ ..|++||+.+++. +..+.+| ...++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999985444 55677788899999999999999887654 4799999988754 3333333 346899999
Q ss_pred CCEEEEEE-CCCcEE--EEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCC-eEEEEEecCCCC
Q 003459 113 GEFFASGS-LDTNLK--IWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAG-KLLHDFKCHEGQ 187 (818)
Q Consensus 113 g~~Lasgs-~Dg~I~--IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~IwDl~t~-~~i~~~~~h~~~ 187 (818)
|++|+.+. .+|.+. +||+.++. ...+..+...+....|+|||++|+.++ .+|...||++... .....+ .+.+
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC-
Confidence 99888765 577654 55766555 455666777788999999999877665 4677777776432 222222 3333
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003459 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 188 I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
.+..|+|+|.+|+.++.++ +.+||+.+++........ ....+.|+|||++|+.++.+ +..+|.+
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 4678999999998888765 566999988754333222 23567899999999987654 5666654
No 201
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.59 E-value=2.7e-14 Score=157.65 Aligned_cols=240 Identities=20% Similarity=0.325 Sum_probs=176.0
Q ss_pred EcCCCCEEEE--EECCCeEEEEECCCC-eE----EEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCC-----
Q 003459 67 FDSSEVLVAA--GAASGTIKLWDLEEA-KI----VRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKK----- 133 (818)
Q Consensus 67 fspdg~~Las--gs~DG~I~IWDl~t~-~~----v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~----- 133 (818)
|+.+...+++ .+..|.|.||++... +. +-.+. ....|+.+.|.|.. ..|++++.||.|++|.+..+
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3334445544 456799999998752 21 22222 45679999999955 57999999999999998754
Q ss_pred --eEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003459 134 --GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (818)
Q Consensus 134 --~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~ 210 (818)
.+-..+..|...|+.+.|+| -.+.|++++.|.+|++||+++++....+.+|.+.|..++|+|+|+.+|+.+.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 34566788999999999999 556899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeE-EEEeCCC-CCCeeEEEEeCCCCEEEEEECC-----CEEEEEecCCcee----ccccccccceeeeeecC-
Q 003459 211 FWDLETFEL-IGSAGPE-TSGVRCLTFNPDGRTLLCGLHE-----SLKVFSWEPIRCH----DAVDVGWSRLSDLNVHE- 278 (818)
Q Consensus 211 IwDl~t~~~-i~~~~~~-~~~I~sl~fspdg~~Lasgs~d-----~I~Vwd~~~~~~~----~~~~~~~~~v~~l~~~~- 278 (818)
+|..++++. +..-.+. ...-..|.|.-||+++++.+-+ .+.+|+....... ..+++.-+.+-...-.|
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 999987654 3332222 2223567888899998865433 3888887654421 23344444443333344
Q ss_pred CCEEEEEEcCCeEEEEEecCCCceeeeeccc
Q 003459 279 GKLLGCSYNQSCVGVWVVDISRIEPYTIGSV 309 (818)
Q Consensus 279 g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~~ 309 (818)
+-++++|-.|..|.+|.+-... ||.....
T Consensus 826 ~~lfltGKGD~~v~~yEv~~es--Py~lpl~ 854 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYES--PYLLPLA 854 (1012)
T ss_pred ceEEEecCCCceEEEEEecCCC--ceeeecc
Confidence 4556788889999999876543 4544443
No 202
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=7.4e-13 Score=139.01 Aligned_cols=279 Identities=15% Similarity=0.282 Sum_probs=185.7
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC---
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEA--- 91 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~-~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~t~--- 91 (818)
..+..++|++ .-..++++..|-.|++|+-.. ++...++ .....|+|++|-|. +.-|+.|+..| |.+|.....
T Consensus 99 ~dlr~~aWhq-H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 99 IDLRGVAWHQ-HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred cceeeEeech-hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 4678899998 445588889999999999765 4444454 34568999999984 45788888766 999986421
Q ss_pred -eE----------EEEEcCCCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003459 92 -KI----------VRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 92 -~~----------v~~l~~h~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~ 159 (818)
.. +....+| ..|+++.|.+||..+++++. |..|.|||..++..+.......+.+.-+.|+|||.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 1122344 67999999999999998876 56899999999887665544456788999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC----C--------e---EEEE--
Q 003459 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET----F--------E---LIGS-- 222 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t----~--------~---~i~~-- 222 (818)
++..|+..++|.......-.......+.|...+|+|+|.+|+.... |.-++|.+.- . + ++..
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 9999999999965443222223334569999999999987665543 3334443321 0 0 1111
Q ss_pred ---eCC----CCCCeeEEEEeCCCCEEEEEECCC---------EEEEEecCCceecc-----ccccccceeeee--ecCC
Q 003459 223 ---AGP----ETSGVRCLTFNPDGRTLLCGLHES---------LKVFSWEPIRCHDA-----VDVGWSRLSDLN--VHEG 279 (818)
Q Consensus 223 ---~~~----~~~~I~sl~fspdg~~Lasgs~d~---------I~Vwd~~~~~~~~~-----~~~~~~~v~~l~--~~~g 279 (818)
+.. -.+++.+++|+|.|.+|++...++ |.+||....-.... ........-.+- ..++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 111 146789999999999999886653 23333222111111 111111111111 1467
Q ss_pred CEEEEEEcCCeEEEEEecCCC
Q 003459 280 KLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 280 ~lLatg~~Dg~V~IWdvd~~~ 300 (818)
.+|.++.+.|.+.-|++....
T Consensus 414 ~lLsiaWsTGriq~ypl~f~~ 434 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRYPLTFQC 434 (445)
T ss_pred cEEEEEeccCceEeeeeEEEe
Confidence 888899998888888766543
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=4.9e-14 Score=150.93 Aligned_cols=194 Identities=21% Similarity=0.320 Sum_probs=153.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-
Q 003459 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG- 141 (818)
Q Consensus 63 ~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~- 141 (818)
.+++|+.+|..+++|+.||++++|++.+...+.....|...|.++.|+|||++|++-+.| ..+||+.+++-++.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 578999999999999999999999999888888888899999999999999999999999 899999999977766542
Q ss_pred -CCCCeEEEEEcCCC---C--EEEEEECCCeEEEEECCCCeE-----EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003459 142 -HTRGVNAIRFTPDG---R--WVVSGGEDNTVKLWDLTAGKL-----LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (818)
Q Consensus 142 -h~~~V~~l~fspdg---~--~L~sgs~Dg~I~IwDl~t~~~-----i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~ 210 (818)
.......+.|+.|+ . .++.....+.|+.||+...+- ..+.......|.+++.+++|++++.|+.||.|-
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 23346678888776 2 333334456677777654321 111222345799999999999999999999999
Q ss_pred EEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEEE-CCCEEEEEecC
Q 003459 211 FWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCGL-HESLKVFSWEP 257 (818)
Q Consensus 211 IwDl~t~~~i~~~-~~~~~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~ 257 (818)
|++..+.+.+... +.|...|+.+.|+||.++++.-+ +....|..+..
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999998877654 67888999999999999998644 44566666543
No 204
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=4.9e-14 Score=150.88 Aligned_cols=195 Identities=19% Similarity=0.301 Sum_probs=155.2
Q ss_pred EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003459 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (818)
.+++|+. ++..|++|+.||++++|++.....+.....|...|.++.|+|||++|++.+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6899998 66789999999999999988888888888899999999999999999999999 899999999977666542
Q ss_pred --CCCCeEEEEEeCCC---CEE--EEEECCCcEEEEECCCCeE-----EEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 100 --HRSNCISVDFHPFG---EFF--ASGSLDTNLKIWDIRKKGC-----IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (818)
Q Consensus 100 --h~~~V~sv~fspdg---~~L--asgs~Dg~I~IwDl~~~~~-----i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I 167 (818)
-+.....+.|+.++ .++ +....-+.|..||+..... ..+.......|.+++.+++|++++.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 23346677888776 332 2333345677776643221 11111123469999999999999999999999
Q ss_pred EEEECCCCeEEEEEe-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 003459 168 KLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 168 ~IwDl~t~~~i~~~~-~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t 216 (818)
.|++..+-+.++.++ .|...|+.+.|+|+.+++++.+.|.+..+..+.-
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999888777665 5889999999999999999999898888876653
No 205
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=2e-12 Score=149.21 Aligned_cols=295 Identities=15% Similarity=0.218 Sum_probs=202.6
Q ss_pred cccceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC---CEEEEEEC
Q 003459 3 TKRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE---VLVAAGAA 79 (818)
Q Consensus 3 t~r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg---~~Lasgs~ 79 (818)
.....+...+.+-...-..-.|++| +++++... +..|.||...++.++..+.+|..++..+.+.|.. .++++++.
T Consensus 3 ~e~~~~~~~lgg~n~~~~~avfSnD-~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl 80 (792)
T KOG1963|consen 3 RESGGKPALLGGRNGNKSPAVFSND-AKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSL 80 (792)
T ss_pred cccccceeeeccccceecccccccC-CcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEec
Confidence 3444555555444443344558884 44444443 4689999999999999999999999999998754 47789999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeE------------------------------------------------------
Q 003459 80 SGTIKLWDLEEAKIVRTLTGHRSNCI------------------------------------------------------ 105 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~V~------------------------------------------------------ 105 (818)
+|.|++||...+..++++..+.. +.
T Consensus 81 ~G~I~vwd~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 81 DGTIRVWDWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred CccEEEecCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 99999999998887776542111 11
Q ss_pred -----EEEEeCCCCEEEEEECCCcEEEEECCCCeEEE-E---EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--
Q 003459 106 -----SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-T---YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA-- 174 (818)
Q Consensus 106 -----sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~-~---l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t-- 174 (818)
++.+++.|.+.+.. .+..+++|+..++.... . -..|...+++.+++|.++++++|..||.|.+|.--.
T Consensus 160 ~~~~~~I~~~~~ge~~~i~-~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~ 238 (792)
T KOG1963|consen 160 HQEPKSIVDNNSGEFKGIV-HMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS 238 (792)
T ss_pred hcCCccEEEcCCceEEEEE-EeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc
Confidence 12222223222222 23457777776544110 0 123666789999999999999999999999996432
Q ss_pred --CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-CCCEE
Q 003459 175 --GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HESLK 251 (818)
Q Consensus 175 --~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs-~d~I~ 251 (818)
......+.-|...|+++.|+++|.+|++|+.+|.+.+|.+.+++ ..-+.--.++|..+.++||+.+.+... |+.|.
T Consensus 239 ~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~ 317 (792)
T KOG1963|consen 239 DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIH 317 (792)
T ss_pred cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEE
Confidence 12345566688999999999999999999999999999999988 333444578899999999998877654 45687
Q ss_pred EEEecCCceecccc---cc--------ccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCce
Q 003459 252 VFSWEPIRCHDAVD---VG--------WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 252 Vwd~~~~~~~~~~~---~~--------~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
+...........+. .. .+....+.+ +.-+.++-.+..|+|.+||+-+....
T Consensus 318 li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i 380 (792)
T KOG1963|consen 318 LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTI 380 (792)
T ss_pred EEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecccccee
Confidence 77664433322211 11 111222333 33566777788999999998877755
No 206
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.55 E-value=8.4e-15 Score=166.21 Aligned_cols=245 Identities=19% Similarity=0.335 Sum_probs=190.9
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC
Q 003459 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (818)
Q Consensus 52 i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~ 131 (818)
+..+.+|..+|+|+.|...|.++++|+.|..++||..+++.++....||.+.|+.++.+...-++++++.|..|++|-+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 34456899999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--------------EEEEE---------e-c----
Q 003459 132 KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--------------LLHDF---------K-C---- 183 (818)
Q Consensus 132 ~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~--------------~i~~~---------~-~---- 183 (818)
.+.++..+.+|.+.|++++|+|-. +.+.||++++||.+-.- .+..+ . +
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 999999999999999999999954 67899999999987110 11000 0 0
Q ss_pred --CCCCEEEEEEeCCCC-----------EEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEE--EEECC
Q 003459 184 --HEGQIQCIDFHPHEF-----------LLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL--CGLHE 248 (818)
Q Consensus 184 --h~~~I~sv~fspdg~-----------~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~La--sgs~d 248 (818)
....+.+++|..++- +.+++-.+..+.+|++.+|.+++...+|...+.-+.++|-+..++ .|.++
T Consensus 339 ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dg 418 (1113)
T KOG0644|consen 339 EARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDG 418 (1113)
T ss_pred ccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCC
Confidence 000122233333332 333334456788999999999999999999999999999877665 45666
Q ss_pred CEEEEEecCCceecccccc-ccceeeeeecCCCEEEEEEcCCeEEEEEecCCC
Q 003459 249 SLKVFSWEPIRCHDAVDVG-WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~-~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
...|||.-.+...+.+..+ +..+.+-+..+|..+++.-.-|.++|....-++
T Consensus 419 st~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 419 STIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 7999998777666555443 333444455788888888888888887665544
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=2.9e-12 Score=135.24 Aligned_cols=237 Identities=18% Similarity=0.273 Sum_probs=180.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC--cEEEEECCCCeEE
Q 003459 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--NLKIWDIRKKGCI 136 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg--~I~IwDl~~~~~i 136 (818)
...+..+.|+.+...|..|+.|| .++|..+..............|..+-|+ ..++|..+.+. .++++++..+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceE
Confidence 34567777999999999999998 5788876544322222223345555565 45666665544 5999999988888
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec---CCCCEEEEEEeCCCCEEEEEe--CCCeEEE
Q 003459 137 HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEFLLATGS--ADRTVKF 211 (818)
Q Consensus 137 ~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~---h~~~I~sv~fspdg~~Lasgs--~Dg~I~I 211 (818)
..+. ....|.++.++. +.|+++-.+. |+|||+++.+.++++.. +...+.++.+++.+.+||.-+ ..|.|.+
T Consensus 82 Ce~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 7776 456799999974 4677665544 99999999999988864 334466666666666887643 4689999
Q ss_pred EECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC--EEEEEecCCceecccccccc--ceeeeee-cCCCEEEEEE
Q 003459 212 WDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES--LKVFSWEPIRCHDAVDVGWS--RLSDLNV-HEGKLLGCSY 286 (818)
Q Consensus 212 wDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~--I~Vwd~~~~~~~~~~~~~~~--~v~~l~~-~~g~lLatg~ 286 (818)
||+.+.+.+..+..|.+.+.+++|+++|.+||++++.+ |+||....+.....+.-+.. .+..+.+ +++++|++.+
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 99999999999999999999999999999999999986 99999998888777655543 3444544 7899999999
Q ss_pred cCCeEEEEEecCCCce
Q 003459 287 NQSCVGVWVVDISRIE 302 (818)
Q Consensus 287 ~Dg~V~IWdvd~~~~~ 302 (818)
+.++|+||.++.....
T Consensus 238 ~TeTVHiFKL~~~~~~ 253 (391)
T KOG2110|consen 238 NTETVHIFKLEKVSNN 253 (391)
T ss_pred CCCeEEEEEecccccC
Confidence 9999999999877633
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=2.8e-14 Score=155.75 Aligned_cols=216 Identities=25% Similarity=0.408 Sum_probs=165.7
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcC--CCCEEEEEECCCeE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDS--SEVLVAAGAASGTI 83 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~-~h~~~V~~l~fsp--dg~~Lasgs~DG~I 83 (818)
-.-+++.||++.|+|++|+. +|.+|++|++|-.+.|||....+.++.+. +|...|.++.|-| +.+++++|..|..|
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred chhhhhccccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 34468899999999999998 77899999999999999998777777664 8999999999987 56789999999999
Q ss_pred EEEECCCC----------eEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCe-------EEE---EEecC
Q 003459 84 KLWDLEEA----------KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKG-------CIH---TYKGH 142 (818)
Q Consensus 84 ~IWDl~t~----------~~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~-------~i~---~l~~h 142 (818)
+++|+... .....+..|...|..++-.|++ ..|.+++.||+|+-||++... +.. .+...
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99999742 3344566788899999999998 679999999999999998632 111 11112
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC--------Ce----------EEEEEe-cCC-----------CCEEEE
Q 003459 143 TRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTA--------GK----------LLHDFK-CHE-----------GQIQCI 191 (818)
Q Consensus 143 ~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t--------~~----------~i~~~~-~h~-----------~~I~sv 191 (818)
--...|+..+| +..+|++|+.|...++||.+. +. ++..|. +|- ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 23467889998 567899999999999999542 11 222222 111 115667
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 192 DFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
.|+|+|.-|+..-....|+++|+..++....+
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 89999987777666678999999887755443
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=3.9e-13 Score=141.59 Aligned_cols=248 Identities=16% Similarity=0.244 Sum_probs=187.0
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------CeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcE
Q 003459 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE------AKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNL 125 (818)
Q Consensus 53 ~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t------~~~v~~l~-~h~~~V~sv~fspdg~~Lasgs~Dg~I 125 (818)
+.+.+|.+.|.++.|+.++++|++|+.|..+++|+++. .+++.... .|.+.|.|++|.....++++|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 34568999999999999999999999999999999863 35555544 356899999999988999999999999
Q ss_pred EEEECCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEE--ecCCCCEEEEEEeCC-CCE
Q 003459 126 KIWDIRKKGCIHTYKG--HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK-LLHDF--KCHEGQIQCIDFHPH-EFL 199 (818)
Q Consensus 126 ~IwDl~~~~~i~~l~~--h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~-~i~~~--~~h~~~I~sv~fspd-g~~ 199 (818)
.+.|+.+.+.+..+.. ..+.|+.+..+|-.+.|++.+.++.|.+||.+... .+..+ .........+.|+|. ..+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 9999999998887752 23589999999999999999999999999998754 22222 123456788999996 568
Q ss_pred EEEEeCCCeEEEEECCCCeE-EEE------eCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccc----ccc
Q 003459 200 LATGSADRTVKFWDLETFEL-IGS------AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV----DVG 267 (818)
Q Consensus 200 Lasgs~Dg~I~IwDl~t~~~-i~~------~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~----~~~ 267 (818)
|++.+..+-+-+||.+..+. +.. +......-.++.|+|.|..+.+--.+ .-.+||+-..+|.-.- ..+
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 88888999999999986432 211 11112223567899999888765444 3567888776664221 123
Q ss_pred cc---ceeeeeecCCCEEEEEEcCCeEEEEEecCCC
Q 003459 268 WS---RLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 268 ~~---~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
+. .+..+++.+..-+++|+++=.|++|.+.-..
T Consensus 290 Y~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ 325 (609)
T KOG4227|consen 290 YCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRAN 325 (609)
T ss_pred ceeeeeeeeeeeecceeeeccCcccceEEEecCCCc
Confidence 32 2344455667779999999999999876443
No 210
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=6.3e-14 Score=151.76 Aligned_cols=290 Identities=16% Similarity=0.241 Sum_probs=218.9
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcC--CCCEEEEEECCCeEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDS--SEVLVAAGAASGTIK 84 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~-~h~~~V~~l~fsp--dg~~Lasgs~DG~I~ 84 (818)
....+..|.+.|+.|.|.. .+.+|++|+.|..|.+||+..+.....+. +|...|....|-| +...|++++.||.++
T Consensus 134 l~~kL~~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhcccCCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 3457889999999999998 77899999999999999998888776664 7999999999977 446788999999999
Q ss_pred EEECCCC-eE--EEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEE---ecCCC---CeEEEEEcCC
Q 003459 85 LWDLEEA-KI--VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTY---KGHTR---GVNAIRFTPD 154 (818)
Q Consensus 85 IWDl~t~-~~--v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l---~~h~~---~V~~l~fspd 154 (818)
+-.+... .+ ...+..|.+.|..++.-|+.. .|.+++.|+.+.-+|++.......+ ..+.. ....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 8876543 22 234556999999999999876 4899999999999999877644333 22333 4678888884
Q ss_pred C-CEEEEEECCCeEEEEECCCCe------EEEEEec------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--C--
Q 003459 155 G-RWVVSGGEDNTVKLWDLTAGK------LLHDFKC------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLET--F-- 217 (818)
Q Consensus 155 g-~~L~sgs~Dg~I~IwDl~t~~------~i~~~~~------h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t--~-- 217 (818)
. ..+++++.|..+++||.+.-. .+..|.. ..-.|+|++|+.++.-|.++..|-.|+++.-.. |
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 4 489999999999999987522 2233322 234699999998776666777788899995332 2
Q ss_pred --------eEEEE-eCCCC--CCeeEEEE-eCCCCEEEEEECCC-EEEEEecCCceeccccccccceeeeeec-CCCEEE
Q 003459 218 --------ELIGS-AGPET--SGVRCLTF-NPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNVH-EGKLLG 283 (818)
Q Consensus 218 --------~~i~~-~~~~~--~~I~sl~f-spdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~~~v~~l~~~-~g~lLa 283 (818)
..+.. +++|. ..|.++-| -|...|+++|++-+ |-||+-.+.+.+..+......+.++..| --.+||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence 22222 56663 34777765 57788999998764 7777777777777777776777788765 458899
Q ss_pred EEEcCCeEEEEEecC
Q 003459 284 CSYNQSCVGVWVVDI 298 (818)
Q Consensus 284 tg~~Dg~V~IWdvd~ 298 (818)
+++-|..|+||...+
T Consensus 453 sSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 453 SSGIDHDVKIWTPLT 467 (559)
T ss_pred ccCCccceeeecCCc
Confidence 999999999997633
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.53 E-value=8.9e-13 Score=155.56 Aligned_cols=258 Identities=17% Similarity=0.225 Sum_probs=189.5
Q ss_pred EECCCCceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC-------eEEEEEcCCCCCeEEEEEeCCCCE
Q 003459 44 WAIGKPNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEEA-------KIVRTLTGHRSNCISVDFHPFGEF 115 (818)
Q Consensus 44 Wdl~~~~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~t~-------~~v~~l~~h~~~V~sv~fspdg~~ 115 (818)
|+. .|..+..+..|...|..++.++.. .++++|+.||+|++||...- +...++......+.++.+.+.+..
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 577888888899999999987655 89999999999999997531 223334445678899999999999
Q ss_pred EEEEECCCcEEEEECCCCe-------EEEEEecCC-CCe-EEEEEcC-CCC-EEEEEECCCeEEEEECCCCeEEEEEe--
Q 003459 116 FASGSLDTNLKIWDIRKKG-------CIHTYKGHT-RGV-NAIRFTP-DGR-WVVSGGEDNTVKLWDLTAGKLLHDFK-- 182 (818)
Q Consensus 116 Lasgs~Dg~I~IwDl~~~~-------~i~~l~~h~-~~V-~~l~fsp-dg~-~L~sgs~Dg~I~IwDl~t~~~i~~~~-- 182 (818)
+|+++.||.|.+.++.... +......+. +.+ ..-+|.. .+. .|+.+..-+.|..||++.....+..+
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999987621 122222222 223 3333433 233 78888889999999999876665554
Q ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC-CCCCCeeEEEEeCC---CCEEEEEEC---CCEEEEEe
Q 003459 183 CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-PETSGVRCLTFNPD---GRTLLCGLH---ESLKVFSW 255 (818)
Q Consensus 183 ~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~-~~~~~I~sl~fspd---g~~Lasgs~---d~I~Vwd~ 255 (818)
...+.|++++.+|.+.++++|+..|.+.+||++-+.++..+. ++..+|+.+..+|- ..+.++++. +-+.+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 346889999999999999999999999999999888887763 44577888877663 345555443 35999999
Q ss_pred cCCceecccccc-------c-------------cceeeeeecCCCEEEEEEcCCeEEEEEecCCCce
Q 003459 256 EPIRCHDAVDVG-------W-------------SRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 256 ~~~~~~~~~~~~-------~-------------~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
+++.+..++-.. | ..+.+.....+.++.+|+.|..|+.||.......
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 999887665333 1 1112222245688999999999999998877654
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=5.2e-13 Score=155.20 Aligned_cols=240 Identities=20% Similarity=0.374 Sum_probs=174.0
Q ss_pred CCEEEEEEee-CCCcEEEEEeCCCeEEEEEC-----CCCceEEEecC---C----CCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 17 STVNCLKIGR-KSSRVLVTGGEDHKVNLWAI-----GKPNAILSLSG---H----TSGIDSVSFDSSEVLVAAGAASGTI 83 (818)
Q Consensus 17 ~~V~~lafsp-~~~~lLatgs~Dg~V~lWdl-----~~~~~i~~l~~---h----~~~V~~l~fspdg~~Lasgs~DG~I 83 (818)
..|+.+.+-. ++..++.+|+.||.|+||+- .+.+.+..+.+ + .+.=.-+.|.....+|++++.-..|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 4688888654 45568999999999999964 22333333221 1 1111346777666666676668899
Q ss_pred EEEECCCCeEEEEEcC-CCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCe---EEEEEecCCCC--eEEEEEcCCCC
Q 003459 84 KLWDLEEAKIVRTLTG-HRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKG---CIHTYKGHTRG--VNAIRFTPDGR 156 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~~-h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~---~i~~l~~h~~~--V~~l~fspdg~ 156 (818)
+|||....+.+..+.. ....++++.-.- .|+.|++|..||.|++||.+... .+..++.|+.. |..+.+.+.|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 9999998888777763 333455554432 36899999999999999987543 57778889887 99999998665
Q ss_pred E-EEEEECCCeEEEEECCCCeEEE--EEecCC--C-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC------
Q 003459 157 W-VVSGGEDNTVKLWDLTAGKLLH--DFKCHE--G-QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG------ 224 (818)
Q Consensus 157 ~-L~sgs~Dg~I~IwDl~t~~~i~--~~~~h~--~-~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~------ 224 (818)
. |++|+.+|.|++||++...... ++..|- + ..+++..|++...+|+|+. +.|+||++... .+..++
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccc
Confidence 4 9999999999999999742222 222222 3 5999999999999999998 99999998743 333322
Q ss_pred -CCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC
Q 003459 225 -PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 225 -~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (818)
...+.+.|++|+|..-.+++|+.| .+.||.-+..
T Consensus 1348 ~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 224567999999999999999877 4888876544
No 213
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=5.8e-14 Score=153.32 Aligned_cols=210 Identities=24% Similarity=0.471 Sum_probs=161.2
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-cCCCCCeEEEEEeCC--CCEEEEEECCCcEEEE
Q 003459 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL-TGHRSNCISVDFHPF--GEFFASGSLDTNLKIW 128 (818)
Q Consensus 52 i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l-~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~Iw 128 (818)
...+.||++.|+|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-|. .+.+++|..|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3467899999999999999999999999999999999888888776 489999999999995 4589999999999999
Q ss_pred ECCC----------CeEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEE-E---------EEecCCCC
Q 003459 129 DIRK----------KGCIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKLL-H---------DFKCHEGQ 187 (818)
Q Consensus 129 Dl~~----------~~~i~~l~~h~~~V~~l~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i-~---------~~~~h~~~ 187 (818)
|+.. ......+..|...|..++..|++ +.+.++++||+|+-||++....- . .+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9974 23455567799999999999988 88999999999999999973211 0 11111234
Q ss_pred EEEEEEeCC-CCEEEEEeCCCeEEEEECCC--------Ce----------EEEEeCC-C--------C---CCeeEEEEe
Q 003459 188 IQCIDFHPH-EFLLATGSADRTVKFWDLET--------FE----------LIGSAGP-E--------T---SGVRCLTFN 236 (818)
Q Consensus 188 I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t--------~~----------~i~~~~~-~--------~---~~I~sl~fs 236 (818)
..|+..+|. ..+|++|+.|-..++||.+. +. ++..+.+ | . ..++-+.|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 678899995 67999999999999999431 11 1222211 1 0 124667899
Q ss_pred CCCCEEEEEECC-CEEEEEecCCcee
Q 003459 237 PDGRTLLCGLHE-SLKVFSWEPIRCH 261 (818)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~~~~~~ 261 (818)
|+|.-|++...+ .+.+|++...+..
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 999888876444 5888888765543
No 214
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=7.2e-12 Score=143.68 Aligned_cols=203 Identities=13% Similarity=0.117 Sum_probs=148.5
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~ 115 (818)
..|.+||.. +.....+..|...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+...+....|+|+|+.
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCE
Confidence 378888874 4555667778889999999999998888764 468999999888654 34446667788999999998
Q ss_pred EE-EEECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCEE
Q 003459 116 FA-SGSLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQ 189 (818)
Q Consensus 116 La-sgs~Dg--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~ 189 (818)
|+ +.+.++ .|++||+.++.. ..+..+........|+|||++|+..+.. | .|++||+..+... .+..+.+.+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-EeecCCCccc
Confidence 76 445555 488889987764 4455566667789999999999877643 3 6889998766543 3333455667
Q ss_pred EEEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003459 190 CIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 190 sv~fspdg~~Lasgs~D---g~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (818)
...|+|+|++|+....+ ..|.+||+..+.. ..+.. ...+....|+|||+.|+....
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEc
Confidence 78999999999887643 3688899866543 22322 234678899999999886543
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=4.1e-12 Score=145.32 Aligned_cols=222 Identities=11% Similarity=0.088 Sum_probs=154.0
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEe--CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCC--eEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASG--TIK 84 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs--~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG--~I~ 84 (818)
+.+..+...+.+.+|+|++..++++.. .+..|.+|++.+++... +......+....|+|||+.|+.. +.+| .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 345556678999999996655444432 24579999998775433 22233345568999999988765 3344 599
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003459 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (818)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D-g--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sg 161 (818)
+||+.+++..... .+...+....|+|+|+.|+..+.+ + .|+++|+.++.. ..+..+........|+|||++|+..
T Consensus 271 ~~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 271 VMDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred EEECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEE
Confidence 9999988765443 345567889999999988877754 3 466667776644 3344344456678999999999887
Q ss_pred ECC---CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCe---EEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003459 162 GED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT---VKFWDLETFELIGSAGPETSGVRCLTF 235 (818)
Q Consensus 162 s~D---g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~---I~IwDl~t~~~i~~~~~~~~~I~sl~f 235 (818)
+.+ ..|.+||+.+++.. .+.. ........|+|||.+|+.++.++. +.++++. +.....+..+.+.+...+|
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAW 425 (429)
T ss_pred EccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCccc
Confidence 654 35889999887643 3332 222346789999999999887764 7777874 4445556667777888888
Q ss_pred eC
Q 003459 236 NP 237 (818)
Q Consensus 236 sp 237 (818)
+|
T Consensus 426 sp 427 (429)
T PRK03629 426 SP 427 (429)
T ss_pred CC
Confidence 87
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.51 E-value=2.4e-11 Score=126.29 Aligned_cols=235 Identities=15% Similarity=0.268 Sum_probs=164.2
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEE-EEECC------CeEEEEECCC
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA-AGAAS------GTIKLWDLEE 90 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~La-sgs~D------G~I~IWDl~t 90 (818)
....++|+- +...+++|.++| .+||+++--+....-..+.+.+.-+..--..++|+ +|+.+ +.|.|||=..
T Consensus 7 ~~lsvs~NQ-D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 7 KTLSVSFNQ-DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred ceeEEEEcc-CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 344589987 555678887776 99999865333222222222221111111233443 34433 5799999777
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC-CCeEEEEEecCCCCeEEEEEcC--CCCEEEEE-ECCCe
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIRFTP--DGRWVVSG-GEDNT 166 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~-~~~~i~~l~~h~~~V~~l~fsp--dg~~L~sg-s~Dg~ 166 (818)
.+++.++. ...+|.++.+.+ ..|++. ..+.|++|... +.+.++.+.....+=--+++.| +...||.- -.-|.
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r--~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq 160 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRR--DRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ 160 (346)
T ss_pred CcEEEEEE-eccceeeEEEcC--CeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence 77887777 678999999985 456655 46789999987 4555655543332222333444 33444443 34589
Q ss_pred EEEEECCCCeE--EEEEecCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCeEEEEeCC--CCCCeeEEEEeCCCCE
Q 003459 167 VKLWDLTAGKL--LHDFKCHEGQIQCIDFHPHEFLLATGSADRT-VKFWDLETFELIGSAGP--ETSGVRCLTFNPDGRT 241 (818)
Q Consensus 167 I~IwDl~t~~~--i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~-I~IwDl~t~~~i~~~~~--~~~~I~sl~fspdg~~ 241 (818)
|.|-|+...+. ...+..|.+.|.|++.+-+|.++|+++..|+ |+|||..+|+.+..++- ....|.+|+|+|++.+
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 99999987655 4677889999999999999999999999996 89999999999988753 3567999999999999
Q ss_pred EEEEECC-CEEEEEecCC
Q 003459 242 LLCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 242 Lasgs~d-~I~Vwd~~~~ 258 (818)
|+++++. +++||.+...
T Consensus 241 LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEcCCCeEEEEEeecC
Confidence 9999887 5999988753
No 217
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.50 E-value=2.5e-13 Score=148.53 Aligned_cols=164 Identities=21% Similarity=0.374 Sum_probs=128.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEE--cCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF--DSSEVLVAAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~f--spdg~~Lasgs~DG~I~IWDl~t~~~ 93 (818)
+..|+|+.|-|.+...++.+-.+|.+++||.. +....+...| .+++..+......+. .+..+
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~----------~~~~~t~p~~~~~k~~~~f~i~t~ksk------~~rNP 282 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE----------IVCGATAPSYQALKDGDQFAILTSKSK------KTRNP 282 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeecc----------ccccCCCCcccccCCCCeeEEeeeecc------ccCCc
Confidence 36899999999777888888999999999861 1222222233 235555544322111 11133
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (818)
Q Consensus 94 v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~ 173 (818)
+..+.--.+.|..++|+|||++||+.+.||.++|||..+.+.+..++..-+...|++|+|||++|++|++|.-|.||.+.
T Consensus 283 v~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 283 VARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred cceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 33333334578999999999999999999999999999988887777777889999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCEEEEEEeC
Q 003459 174 AGKLLHDFKCHEGQIQCIDFHP 195 (818)
Q Consensus 174 t~~~i~~~~~h~~~I~sv~fsp 195 (818)
.++.+..-++|.+.|..++|.|
T Consensus 363 erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEeccccccceeeEeecc
Confidence 9999999999999999999985
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.50 E-value=4e-11 Score=133.94 Aligned_cols=297 Identities=15% Similarity=0.181 Sum_probs=191.9
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIK 84 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~ 84 (818)
...+.++......-..++|+| +++++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ ..+.+.
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVS 103 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEE
T ss_pred CeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCcee
Confidence 344566665544444577888 66778888899999999999999999988544 468899999999998876 589999
Q ss_pred EEECCCCeEEEEEcCC-------CCCeEEEEEeCCCCEEEEEECC-CcEEEEECCCCeEEE-EEecCCCCeEEEEEcCCC
Q 003459 85 LWDLEEAKIVRTLTGH-------RSNCISVDFHPFGEFFASGSLD-TNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDG 155 (818)
Q Consensus 85 IWDl~t~~~v~~l~~h-------~~~V~sv~fspdg~~Lasgs~D-g~I~IwDl~~~~~i~-~l~~h~~~V~~l~fspdg 155 (818)
++|.++.+.++.+... ...+..+..++....+++.-.| +.|.+.|....+.+. +............|+|++
T Consensus 104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccc
Confidence 9999999999887632 3457788888888866665554 888888987654332 232345567889999999
Q ss_pred CEEEEE-ECCCeEEEEECCCCeEEEEEec----CCCCEEEEEEeCC----------CCEEEEEeCCCeEEEEECCCCeEE
Q 003459 156 RWVVSG-GEDNTVKLWDLTAGKLLHDFKC----HEGQIQCIDFHPH----------EFLLATGSADRTVKFWDLETFELI 220 (818)
Q Consensus 156 ~~L~sg-s~Dg~I~IwDl~t~~~i~~~~~----h~~~I~sv~fspd----------g~~Lasgs~Dg~I~IwDl~t~~~i 220 (818)
++++++ ..+..|-++|..+++.+..+.. |..++..+ .||. +...++.-....+.+||..+++.+
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv 262 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV 262 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEE
Confidence 988775 4567899999999988876642 34444433 2332 222212222345667999999999
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEE---EC--CCEEEEEecCCceecccccccc--ceeeeeecCCCEEEEEE-cC-CeE
Q 003459 221 GSAGPETSGVRCLTFNPDGRTLLCG---LH--ESLKVFSWEPIRCHDAVDVGWS--RLSDLNVHEGKLLGCSY-NQ-SCV 291 (818)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasg---s~--d~I~Vwd~~~~~~~~~~~~~~~--~v~~l~~~~g~lLatg~-~D-g~V 291 (818)
..+.....+ ..+..+|+++++.+. .. +.+.|+|.++.+....+..... .+..-+..+|+.+..+. .. +.|
T Consensus 263 ~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i 341 (369)
T PF02239_consen 263 KTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAI 341 (369)
T ss_dssp EEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEE
T ss_pred EEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEE
Confidence 999887666 888889999999987 33 3699999998876655543333 34444457888765443 33 379
Q ss_pred EEEEecCCCceeeee
Q 003459 292 GVWVVDISRIEPYTI 306 (818)
Q Consensus 292 ~IWdvd~~~~~~~~~ 306 (818)
.|||..+-++...+.
T Consensus 342 ~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 342 VVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEETTTTEEEEEEE
T ss_pred EEEECCCcEEEEEEE
Confidence 999999988776544
No 219
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1.8e-12 Score=137.59 Aligned_cols=223 Identities=21% Similarity=0.345 Sum_probs=171.1
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc----eEEEecCCCCCeEEEEEcCCCC-EEEEEECC--CeE
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN----AILSLSGHTSGIDSVSFDSSEV-LVAAGAAS--GTI 83 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~----~i~~l~~h~~~V~~l~fspdg~-~Lasgs~D--G~I 83 (818)
.......+|..++.. ++ .|++|-.+|.+.+|....+. .+..+..+ ..+..+.-++... .+++|+.. ..+
T Consensus 100 ~~~l~~~~I~gl~~~--dg-~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA--DG-TLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred ccccccccccchhhc--CC-EEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccce
Confidence 334445566666654 33 58888999999999986332 33333333 4566666666554 55568888 889
Q ss_pred EEEECCCCeEEEEEcCCC---------CCeEEEEEeCC--CCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEE
Q 003459 84 KLWDLEEAKIVRTLTGHR---------SNCISVDFHPF--GEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRF 151 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~---------~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~f 151 (818)
.|||++..+.+..-+.-. -.++++.|.+. ...|++++.-+.+++||.+.+ +++..+.-...++.++..
T Consensus 176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l 255 (412)
T KOG3881|consen 176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL 255 (412)
T ss_pred eeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee
Confidence 999999887665543211 24567889887 678999999999999999865 477778777889999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEE-EecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCe
Q 003459 152 TPDGRWVVSGGEDNTVKLWDLTAGKLLHD-FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV 230 (818)
Q Consensus 152 spdg~~L~sgs~Dg~I~IwDl~t~~~i~~-~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I 230 (818)
.|+|+++++|..-|.+..||++.++.... +++..+.|.++..||.+.+|++++.|..|+|+|+++.+++...-. ...+
T Consensus 256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~l 334 (412)
T KOG3881|consen 256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRL 334 (412)
T ss_pred cCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccc
Confidence 99999999999999999999999998877 788899999999999999999999999999999999777655322 2345
Q ss_pred eEEEEeCC
Q 003459 231 RCLTFNPD 238 (818)
Q Consensus 231 ~sl~fspd 238 (818)
++|.+.++
T Consensus 335 t~il~~~~ 342 (412)
T KOG3881|consen 335 TFILLRDD 342 (412)
T ss_pred cEEEecCC
Confidence 66655543
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=5.9e-12 Score=138.80 Aligned_cols=282 Identities=12% Similarity=0.177 Sum_probs=206.3
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC--CCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH--TSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h--~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
.|+.| .|...-+.|..+||+..++++|..--.|++||+..-.. .+..| ...|.-.-.+.|-..++.-..|.+|.+
T Consensus 44 LiQdf-e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~Ief 120 (703)
T KOG2321|consen 44 LIQDF-EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEF 120 (703)
T ss_pred HHHhc-CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeee
Confidence 34455 57777889999999888999999999999999864433 33333 334555555555555555566777766
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg 165 (818)
.... |... .+. -......++++.-..-|++++....|+-+++..|..+..|....+.++++..++-..+|++|+.+|
T Consensus 121 Hak~-G~hy-~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 121 HAKY-GRHY-RTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred hhhc-Ceee-eee-cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCc
Confidence 5422 2211 111 123345667765555566666677899999999999999998889999999999988999999999
Q ss_pred eEEEEECCCCeEEEEEec------CCC-----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-CCCCCCeeEE
Q 003459 166 TVKLWDLTAGKLLHDFKC------HEG-----QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCL 233 (818)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~------h~~-----~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~-~~~~~~I~sl 233 (818)
.|-.||.++...+..+.. |.+ .|+++.|..+|-.+++|+.+|.+.|||+++.+++..- ....-+|..+
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l 277 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKL 277 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeee
Confidence 999999998766555542 333 3999999999999999999999999999998876543 3345688999
Q ss_pred EEeCC--CCEEEEEECCCEEEEEecCCceeccccccccceeeee-ecCCCEEEEEEcCCeEEEEEe
Q 003459 234 TFNPD--GRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLN-VHEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 234 ~fspd--g~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~-~~~g~lLatg~~Dg~V~IWdv 296 (818)
.|.+. +..+++....-++|||-.+++....+..... +.+++ ++++.++.++-+++.+..|-+
T Consensus 278 ~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~-lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 278 DWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTSD-LNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred cccccCCCceEEecchHHhhhcccccCCceeeccccCC-cCceeeecCCceEEEecCCCcceeEEc
Confidence 99775 4556666555699999999888776654444 44544 588888999888877765543
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.6e-11 Score=140.80 Aligned_cols=203 Identities=14% Similarity=0.098 Sum_probs=145.4
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~ 115 (818)
..|.+||.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +..+.....+..|+|+|+.
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 468899985 44445566677889999999999999887643 469999998876543 3334445567899999997
Q ss_pred EEE-EECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEecCCCCEE
Q 003459 116 FAS-GSLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DN--TVKLWDLTAGKLLHDFKCHEGQIQ 189 (818)
Q Consensus 116 Las-gs~Dg--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~-Dg--~I~IwDl~t~~~i~~~~~h~~~I~ 189 (818)
|+. .+.+| .|++||+.+++. ..+..+.......+|+|||++|+.++. +| .|+++|+.+++... +..+.....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 764 45555 599999988764 445555555667899999999887764 34 47778887765432 222333455
Q ss_pred EEEEeCCCCEEEEEeCCC---eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003459 190 CIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 190 sv~fspdg~~Lasgs~Dg---~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (818)
..+|+|+|.+|+..+.++ .|.+||+.+++... +. +........|+|||++|+....
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEEe
Confidence 789999999998876443 69999998887653 32 2223456799999999886654
No 222
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.5e-11 Score=138.93 Aligned_cols=211 Identities=13% Similarity=0.103 Sum_probs=146.8
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEE
Q 003459 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (818)
Q Consensus 40 ~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~L 116 (818)
.|.+||...... ..+..+...+...+|+|||+.|+..+. +..|++||+.+++.... ......+....|+|||+.|
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence 688888865443 344456778999999999998887543 45799999988864332 2233345568999999988
Q ss_pred EEE-ECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCEEE
Q 003459 117 ASG-SLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQC 190 (818)
Q Consensus 117 asg-s~Dg--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~s 190 (818)
+.. +.+| .|++||+.+++... +..+...+....|+|||+.|+..+.+ + .|+++|+.+++.. .+..+......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~ 335 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD 335 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccC
Confidence 765 3344 59999998876544 44444567889999999999877764 3 4666677766543 33333445667
Q ss_pred EEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC----EEEEEec
Q 003459 191 IDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES----LKVFSWE 256 (818)
Q Consensus 191 v~fspdg~~Lasgs~D---g~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~----I~Vwd~~ 256 (818)
..|+|+|++|+..+.+ ..|++||+.+++....... .......|+|||++|+.++.++ +.+++++
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 8999999998876643 3688999988865432222 2235678999999999776552 4555554
No 223
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=5.6e-13 Score=144.52 Aligned_cols=284 Identities=19% Similarity=0.277 Sum_probs=210.7
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-CCCCCeEEEEEeCCC--CEEEEEECCCcEEEE
Q 003459 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFG--EFFASGSLDTNLKIW 128 (818)
Q Consensus 52 i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~-~h~~~V~sv~fspdg--~~Lasgs~Dg~I~Iw 128 (818)
...+..|.+.|..+.|+..|..|++|+.|..|.+||+..++....+. +|...|..-.|.|.. ..+++++.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 44577899999999999999999999999999999999998877764 799999888898854 479999999999988
Q ss_pred ECCCCe-E--EEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEec---CCC---CEEEEEEeCCC-
Q 003459 129 DIRKKG-C--IHTYKGHTRGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKC---HEG---QIQCIDFHPHE- 197 (818)
Q Consensus 129 Dl~~~~-~--i~~l~~h~~~V~~l~fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~---h~~---~I~sv~fspdg- 197 (818)
.+...+ + ...+..|.++|..++.-|+ ..-|++++.|+.+.-+|++++.....+.+ +.. ..+.++.+|..
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 765332 2 2345579999999999985 45689999999999999998765544432 233 46788888864
Q ss_pred CEEEEEeCCCeEEEEECCCCeE------EEEeCC------CCCCeeEEEEeCCCCEEEEE-ECCCEEEEEecCCce----
Q 003459 198 FLLATGSADRTVKFWDLETFEL------IGSAGP------ETSGVRCLTFNPDGRTLLCG-LHESLKVFSWEPIRC---- 260 (818)
Q Consensus 198 ~~Lasgs~Dg~I~IwDl~t~~~------i~~~~~------~~~~I~sl~fspdg~~Lasg-s~d~I~Vwd~~~~~~---- 260 (818)
..+++|+.|..+++||.+.... +..+.+ ....|++++|+.++.-|.++ .+..|.+|.-+-+..
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~ 374 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPD 374 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCC
Confidence 4899999999999999875332 233322 24568999999776666555 444677774322211
Q ss_pred ---------ecccccccc--ceee--eeecCCCEEEEEEcCCeEEEEEecCCCceeeeecccceeccccccccCCCCCcc
Q 003459 261 ---------HDAVDVGWS--RLSD--LNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTRVNGLSESKSSASGNLS 327 (818)
Q Consensus 261 ---------~~~~~~~~~--~v~~--l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (818)
..++..+.. .+.. ++.+...++++|++-|.|-||+-.++++..++.+... +..+-+.+|..+-...
T Consensus 375 ~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 375 PSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPVLAS 453 (559)
T ss_pred CCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCchhhc
Confidence 112322221 1333 3446789999999999999999999999999998887 6667777776554444
Q ss_pred ccccccccc
Q 003459 328 VLNENSAKA 336 (818)
Q Consensus 328 ~~~~~~~~~ 336 (818)
.+-+.++|.
T Consensus 454 SGid~DVKI 462 (559)
T KOG1334|consen 454 SGIDHDVKI 462 (559)
T ss_pred cCCccceee
Confidence 455566654
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1e-11 Score=142.30 Aligned_cols=222 Identities=12% Similarity=0.082 Sum_probs=152.7
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeC---CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECCC--e
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGE---DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAASG--T 82 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~---Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Las-gs~DG--~ 82 (818)
.+.+..|...+.+.+|+|++. .|+..+. +..|++||+.+++... +..+.+...+..|+|+|+.|+. .+.+| .
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred ceEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 345666777899999999555 4555542 3469999998776533 3334455567899999997754 45555 5
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~-Dg--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~ 159 (818)
|++||+.+++.. .+..+.......+|+|+|++|+.++. +| .|+++|+.+++... +..+.......+|+|||++|+
T Consensus 274 Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 274 IYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIA 351 (433)
T ss_pred EEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEE
Confidence 999999888754 44545555667899999998887764 44 47777877665432 322334455789999999998
Q ss_pred EEECCC---eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003459 160 SGGEDN---TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCL 233 (818)
Q Consensus 160 sgs~Dg---~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D---g~I~IwDl~t~~~i~~~~~~~~~I~sl 233 (818)
..+.++ .|.+||+.+++.. .+. +........|+|+|++|+..+.+ +.|+++++... ....+..+.+.+...
T Consensus 352 ~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~g~~~~p 428 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-VRQRLVSADGEVREP 428 (433)
T ss_pred EEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEEcccCCCCCCCC
Confidence 776443 6999999887654 333 22244567899999988777653 46888888643 444454445667777
Q ss_pred EEeC
Q 003459 234 TFNP 237 (818)
Q Consensus 234 ~fsp 237 (818)
+|+|
T Consensus 429 ~wsp 432 (433)
T PRK04922 429 AWSP 432 (433)
T ss_pred ccCC
Confidence 7876
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.46 E-value=1.6e-11 Score=127.50 Aligned_cols=268 Identities=18% Similarity=0.340 Sum_probs=185.3
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~ 95 (818)
+.|.-+.|..+...+|.....|+.|.+|++...+....+.....++..++|+|||+ .|.+...+-.|.+|.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 46777889887777788889999999999999999999998889999999999996 45566678899999998876543
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEECC------------------------------------CcEEEEECCCCeEEEEE
Q 003459 96 TLTGHRSNCISVDFHPFGEFFASGSLD------------------------------------TNLKIWDIRKKGCIHTY 139 (818)
Q Consensus 96 ~l~~h~~~V~sv~fspdg~~Lasgs~D------------------------------------g~I~IwDl~~~~~i~~l 139 (818)
+.-.+..+..++|+|+|++.+.++.- ..+.+||---.-.+..+
T Consensus 129 -~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY 207 (447)
T KOG4497|consen 129 -LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY 207 (447)
T ss_pred -ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee
Confidence 33234567889999999988776542 12344442211112222
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE----------------------------------------
Q 003459 140 KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH---------------------------------------- 179 (818)
Q Consensus 140 ~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~---------------------------------------- 179 (818)
. ..-.+..+.|+|.+++|++|+.|+.+++.+--+.+...
T Consensus 208 e-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 208 E-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred e-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 2 22458899999999999999999999886643221110
Q ss_pred --------------------EEe------cCCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCeEEEEeCCCCCCee
Q 003459 180 --------------------DFK------CHEGQIQCIDFHPHEFLLATGSAD--RTVKFWDLETFELIGSAGPETSGVR 231 (818)
Q Consensus 180 --------------------~~~------~h~~~I~sv~fspdg~~Lasgs~D--g~I~IwDl~t~~~i~~~~~~~~~I~ 231 (818)
.++ .....+.-++|++|..++++-... +.+.+||++..+....+. ...+|+
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hcccee
Confidence 011 011235678999999999887643 579999999877654432 356899
Q ss_pred EEEEeCCCCEEEEEECCCEEEEEecCC--ceeccccccccceeeeee-cCCCEEEEEEcCC
Q 003459 232 CLTFNPDGRTLLCGLHESLKVFSWEPI--RCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQS 289 (818)
Q Consensus 232 sl~fspdg~~Lasgs~d~I~Vwd~~~~--~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg 289 (818)
...|+|....|+.+..+ .++|-|.+. ++..+-.-++. +..+.+ .+|..++..+.|.
T Consensus 366 af~WdP~~prL~vctg~-srLY~W~psg~~~V~vP~~GF~-i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGK-SRLYFWAPSGPRVVGVPKKGFN-IQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEEeCCCCceEEEEcCC-ceEEEEcCCCceEEecCCCCce-eeeEEecCCCcEEEEEcCCc
Confidence 99999998888877443 456666543 33333333332 334443 4677777777774
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=4.8e-11 Score=124.01 Aligned_cols=174 Identities=20% Similarity=0.347 Sum_probs=138.2
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEcC--CCCCeEEEEEeCCCCE
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE-EAKIVRTLTG--HRSNCISVDFHPFGEF 115 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~-t~~~v~~l~~--h~~~V~sv~fspdg~~ 115 (818)
.+|.|||=....++.++. ...+|.++.+.++ .|++. ..+.|+||... +-+.++.+.. ......+++-+....+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 579999977777777776 6789999999765 35444 36789999987 4555555542 2334555544444445
Q ss_pred EEE-EECCCcEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCCCeEEEEEec--CCCCEE
Q 003459 116 FAS-GSLDTNLKIWDIRKKGC--IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT-VKLWDLTAGKLLHDFKC--HEGQIQ 189 (818)
Q Consensus 116 Las-gs~Dg~I~IwDl~~~~~--i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~-I~IwDl~t~~~i~~~~~--h~~~I~ 189 (818)
||. |-.-|.|+|-|+...+. ...+.+|...|.|++.+-+|..+|+++..|+ |+|||..+|..+.+++- ....|+
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 555 44568999999986655 4778899999999999999999999999998 89999999999999974 345799
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCC
Q 003459 190 CIDFHPHEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 190 sv~fspdg~~Lasgs~Dg~I~IwDl~t 216 (818)
+|+|+|++.+||+++..|+|+||.++.
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeec
Confidence 999999999999999999999998865
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.3e-11 Score=141.21 Aligned_cols=204 Identities=16% Similarity=0.167 Sum_probs=140.8
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~ 115 (818)
..|.+||. ++.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++.... ......+....|+|+|+.
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 35777776 445455566678889999999999998887643 4699999998876443 334455678999999998
Q ss_pred EEE-EECCCcEEEE--ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEE--ECCCCeEEEEEecCCCCEE
Q 003459 116 FAS-GSLDTNLKIW--DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DNTVKLW--DLTAGKLLHDFKCHEGQIQ 189 (818)
Q Consensus 116 Las-gs~Dg~I~Iw--Dl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~-Dg~I~Iw--Dl~t~~~i~~~~~h~~~I~ 189 (818)
|+. .+.+|...|| |+..+. ...+..+........|+|||++|+..+. +|...+| |+..++... +..+.....
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcC
Confidence 774 5667765555 554444 4555555555677899999999887664 3555555 555554322 222233345
Q ss_pred EEEEeCCCCEEEEEeCCC---eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003459 190 CIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 190 sv~fspdg~~Lasgs~Dg---~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
...|+|+|++|+..+.++ .|.+||+.+++....... .......|+|||++|+.+.++
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEec
Confidence 678999999998877554 699999998775433322 334678999999999877644
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=9.3e-12 Score=142.38 Aligned_cols=222 Identities=12% Similarity=0.098 Sum_probs=148.0
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEe-CC--CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECCCeEEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGG-ED--HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAASGTIKL 85 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs-~D--g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Las-gs~DG~I~I 85 (818)
+.+..+...+.+.+|+|++. .|+..+ .+ ..|++||+.+++... +....+.+.+..|+|||+.|+. .+.+|...|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred eEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence 34557788899999999654 455444 33 459999998876543 3334455678999999998764 566777666
Q ss_pred EE--CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CCcEEEE--ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003459 86 WD--LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIW--DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (818)
Q Consensus 86 WD--l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~-Dg~I~Iw--Dl~~~~~i~~l~~h~~~V~~l~fspdg~~L~s 160 (818)
|. +..+. ...+..+........|+|||++|+..+. +|...+| ++.++.. ..+..+.......+|+|||++|+.
T Consensus 267 y~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~ 344 (427)
T PRK02889 267 YTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAY 344 (427)
T ss_pred EEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEE
Confidence 54 54444 4455555555677899999998876654 4555555 5444443 222222333456789999999998
Q ss_pred EECCC---eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003459 161 GGEDN---TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLT 234 (818)
Q Consensus 161 gs~Dg---~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg---~I~IwDl~t~~~i~~~~~~~~~I~sl~ 234 (818)
.+.++ .|.+||+.+++... +.. ........|+|+|..|+.++.++ .+++.++ ++.....+..+.+.+...+
T Consensus 345 ~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 345 ISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPS 421 (427)
T ss_pred EEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCc
Confidence 77654 69999998876543 322 23346789999999888877544 4666666 3555555555556677778
Q ss_pred EeCC
Q 003459 235 FNPD 238 (818)
Q Consensus 235 fspd 238 (818)
|+|-
T Consensus 422 wsp~ 425 (427)
T PRK02889 422 WGPF 425 (427)
T ss_pred cCCC
Confidence 8763
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=3e-11 Score=138.58 Aligned_cols=223 Identities=11% Similarity=0.040 Sum_probs=154.8
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEe--CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEE-EEECCCe--
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVA-AGAASGT-- 82 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs--~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~La-sgs~DG~-- 82 (818)
..+.+..|...+.+.+|+|++..++++.. .+..|++||+.+++.. .+..+.+.+.+..|+|||+.|+ +.+.+|.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 34567788889999999996554444432 2468999999877653 4455666788899999998775 4455554
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~-Dg--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~ 159 (818)
|++||+.+++.. .+..+........|+|+|++|+..+. +| .|++||+..+.. ..+..+...+....|+|||++|+
T Consensus 272 Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 272 IYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred EEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEE
Confidence 888898887654 45556666778999999998887764 33 688899876654 33433455567789999999998
Q ss_pred EEECC---CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCeEEEEeCCCCCCe
Q 003459 160 SGGED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD------RTVKFWDLETFELIGSAGPETSGV 230 (818)
Q Consensus 160 sgs~D---g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D------g~I~IwDl~t~~~i~~~~~~~~~I 230 (818)
....+ ..|.+||+..+.. ..+. ....+....|+|||+.|+..+.+ ..|+++|+..+... .+. ..+.+
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~-~l~-~~~~~ 425 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNER-EVP-TPGDA 425 (435)
T ss_pred EEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceE-Ecc-CCCCc
Confidence 87654 3688899865543 3333 23356788999999988776543 36888888766543 333 23345
Q ss_pred eEEEEeC
Q 003459 231 RCLTFNP 237 (818)
Q Consensus 231 ~sl~fsp 237 (818)
...+|+|
T Consensus 426 ~~p~Wsp 432 (435)
T PRK05137 426 SDPAWSP 432 (435)
T ss_pred cCcccCC
Confidence 6667765
No 230
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.43 E-value=1.4e-11 Score=125.60 Aligned_cols=149 Identities=17% Similarity=0.360 Sum_probs=111.2
Q ss_pred EEEEEeCCCCEEEEEEC----------CCcEEEEECCC-CeEEEEEec-CCCCeEEEEEcCCCCEEEEE--ECCCeEEEE
Q 003459 105 ISVDFHPFGEFFASGSL----------DTNLKIWDIRK-KGCIHTYKG-HTRGVNAIRFTPDGRWVVSG--GEDNTVKLW 170 (818)
Q Consensus 105 ~sv~fspdg~~Lasgs~----------Dg~I~IwDl~~-~~~i~~l~~-h~~~V~~l~fspdg~~L~sg--s~Dg~I~Iw 170 (818)
..+.|+++|.+|++-.. -|...+|.++. ...+..+.- ..++|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46889999988766433 13344554422 233444432 34579999999999987655 356789999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-
Q 003459 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL- 246 (818)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~---Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs- 246 (818)
|++ ++.+..+. ...++.+.|+|+|++|++++. .|.|.+||+++.+.+..... ..+..+.|+|||++++++.
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEEEEEEe
Confidence 997 66777664 567889999999999999874 46799999999998877654 3478999999999999774
Q ss_pred ------CCCEEEEEecCC
Q 003459 247 ------HESLKVFSWEPI 258 (818)
Q Consensus 247 ------~d~I~Vwd~~~~ 258 (818)
+++++||++...
T Consensus 164 ~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccceeccccEEEEEecCe
Confidence 457999998644
No 231
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=2.6e-11 Score=123.61 Aligned_cols=155 Identities=23% Similarity=0.441 Sum_probs=115.8
Q ss_pred EEEEEcCCCCEEEEEEC----------CCeEEEEECCC-CeEEEEEcC-CCCCeEEEEEeCCCCEEEEE--ECCCcEEEE
Q 003459 63 DSVSFDSSEVLVAAGAA----------SGTIKLWDLEE-AKIVRTLTG-HRSNCISVDFHPFGEFFASG--SLDTNLKIW 128 (818)
Q Consensus 63 ~~l~fspdg~~Lasgs~----------DG~I~IWDl~t-~~~v~~l~~-h~~~V~sv~fspdg~~Lasg--s~Dg~I~Iw 128 (818)
..+.|+++|.+|++-.. -|...+|.++. +..+..+.- ..+.|.+++|+|+|+.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45788999987766433 13455665532 233444432 34579999999999987654 456799999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC
Q 003459 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205 (818)
Q Consensus 129 Dl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D---g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~ 205 (818)
|++ ++.+..+. ...+..+.|+|+|++|++++.+ |.|.+||.++.+.+..+. | ..++.++|+|+|++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 66666664 4667899999999999998754 679999999998888776 3 34789999999999999874
Q ss_pred ------CCeEEEEECCCCeEEEEe
Q 003459 206 ------DRTVKFWDLETFELIGSA 223 (818)
Q Consensus 206 ------Dg~I~IwDl~t~~~i~~~ 223 (818)
|+.++||+.. |+++...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 7789999985 6665543
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.41 E-value=3.9e-11 Score=123.39 Aligned_cols=285 Identities=20% Similarity=0.264 Sum_probs=194.9
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEe------------CCCeEEEEECCCCceEE--Ee-cCCCCCeEEEEEcC---CCC-
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGG------------EDHKVNLWAIGKPNAIL--SL-SGHTSGIDSVSFDS---SEV- 72 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs------------~Dg~V~lWdl~~~~~i~--~l-~~h~~~V~~l~fsp---dg~- 72 (818)
+.+-.-++.|+.-.+ ++|++|. .-|++.+|++.+.+... .+ ...+..+..+.|.- +|.
T Consensus 10 l~~~~~~~C~l~~~~---~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~ 86 (339)
T KOG0280|consen 10 LEADPVPICCLCHTR---NVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDF 86 (339)
T ss_pred eccCCCCcccccccc---ceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccc
Confidence 344445566666544 2677774 34788999986654433 11 12345677788842 444
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEcCCCC------CeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE--EEEEecCCC
Q 003459 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRS------NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC--IHTYKGHTR 144 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~------~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~--i~~l~~h~~ 144 (818)
.++-+..+|.|.++..........+.+-.. ...++.|++.+..++++..+|.+.+-+...... ++.++.|..
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~ 166 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF 166 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccce
Confidence 566677789999998765554444443221 356788999999999999999999666555443 347889999
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECC-CCeEEEE-EecCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC-CeE
Q 003459 145 GVNAIRFTP-DGRWVVSGGEDNTVKLWDLT-AGKLLHD-FKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLET-FEL 219 (818)
Q Consensus 145 ~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~-t~~~i~~-~~~h~~~I~sv~fsp-dg~~Lasgs~Dg~I~IwDl~t-~~~ 219 (818)
+++...|+. +.+.+++|+.||.+..||+| .++.+.. .+.|...|.+|.-+| .+.+|++|+.|..|++||.++ +++
T Consensus 167 E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 167 EAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred eeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc
Confidence 999999986 45789999999999999999 4455554 456889999998887 488999999999999999995 666
Q ss_pred EEEeCCCCCCeeEEEEeCC--CCEEEEEECCCEEEEEecCCcee-----ccccccccceeeeee-cCCCEEE-EEEcCCe
Q 003459 220 IGSAGPETSGVRCLTFNPD--GRTLLCGLHESLKVFSWEPIRCH-----DAVDVGWSRLSDLNV-HEGKLLG-CSYNQSC 290 (818)
Q Consensus 220 i~~~~~~~~~I~sl~fspd--g~~Lasgs~d~I~Vwd~~~~~~~-----~~~~~~~~~v~~l~~-~~g~lLa-tg~~Dg~ 290 (818)
+.... -.++|+.+.++|. ++.|+++..++.+|.+.+..... .....+.+....-.+ +...+|+ |++.|..
T Consensus 247 l~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~ 325 (339)
T KOG0280|consen 247 LFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKK 325 (339)
T ss_pred cccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccc
Confidence 65443 3588999999995 55677888888888887654332 111222211111111 1123344 5678888
Q ss_pred EE-EEEecCCC
Q 003459 291 VG-VWVVDISR 300 (818)
Q Consensus 291 V~-IWdvd~~~ 300 (818)
++ +|-.-++.
T Consensus 326 ~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 326 IRQLWLHITGE 336 (339)
T ss_pred eeeeeeeccCC
Confidence 55 88665554
No 233
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.41 E-value=5.9e-12 Score=129.00 Aligned_cols=196 Identities=16% Similarity=0.329 Sum_probs=154.9
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc---eEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECC
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN---AILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~---~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~ 89 (818)
.|..++++..|+.-+.+++.+++-|-+..|||++++. ....+-.|...|..++|...+ ..||+.+.||.+++||++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 4677999999999889999999999999999998763 355677899999999998855 588999999999999998
Q ss_pred CCeEEEEEcC---CCCCeEEEEEeCCCC-EEEEEECC-CcEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEE
Q 003459 90 EAKIVRTLTG---HRSNCISVDFHPFGE-FFASGSLD-TNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTP-DGRWVVSGG 162 (818)
Q Consensus 90 t~~~v~~l~~---h~~~V~sv~fspdg~-~Lasgs~D-g~I~IwDl~~~-~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs 162 (818)
..+.-..+.. ...+...++|+++.. ++|+-..| ..|.|.|++.. ..+..+++|.+.|+.++|.| ....|++++
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG 307 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG 307 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence 7654433332 245788899998664 66665544 47999999864 56888999999999999999 567899999
Q ss_pred CCCeEEEEECCCCe------EEEEEecCCCCEEEEEEeC-CCCEEEEEeCCCeEEE
Q 003459 163 EDNTVKLWDLTAGK------LLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKF 211 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~------~i~~~~~h~~~I~sv~fsp-dg~~Lasgs~Dg~I~I 211 (818)
.|..+.+||+.+.- ++..+. ..+.|+.+.|++ .+.+++++.. +.+.+
T Consensus 308 DD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 308 DDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred CcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 99999999997532 222333 467899999996 4678888764 34443
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.40 E-value=3.4e-11 Score=125.13 Aligned_cols=275 Identities=12% Similarity=0.214 Sum_probs=190.3
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEEcC
Q 003459 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 21 ~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IWDl~t~~~v~~l~~ 99 (818)
-++|+| +++++|++..- .+.|-|..+-+..+.+.. -+.|..+.|..|..+++++ ..++.|.+|++...+-...+..
T Consensus 13 ~c~fSp-~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSP-CGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECC-CCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 357999 78889988765 788888777665443332 3567889999888766655 5678999999999998889998
Q ss_pred CCCCeEEEEEeCCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC--------------
Q 003459 100 HRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-------------- 164 (818)
Q Consensus 100 h~~~V~sv~fspdg~~-Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D-------------- 164 (818)
...++.+++|+|+|+. |.+...+-.|.+|.+.+.+.... +-.+..+..++|+|||++.+.++.-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH
Confidence 8899999999999975 55566688999999988765443 2233456888999999887765431
Q ss_pred ----------------------CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE---
Q 003459 165 ----------------------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL--- 219 (818)
Q Consensus 165 ----------------------g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~--- 219 (818)
..+.+||---.-.+..+. ..-.+..+.|+|.+.+|+.|+.|+.+++.+--+++.
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e 247 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE 247 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhh
Confidence 234455432222222222 124688899999999999999999888754221110
Q ss_pred ---------------------------------------------------------EEEeC------CCCCCeeEEEEe
Q 003459 220 ---------------------------------------------------------IGSAG------PETSGVRCLTFN 236 (818)
Q Consensus 220 ---------------------------------------------------------i~~~~------~~~~~I~sl~fs 236 (818)
+..++ ....++.-++|+
T Consensus 248 flhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs 327 (447)
T KOG4497|consen 248 FLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFS 327 (447)
T ss_pred hccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeec
Confidence 01111 112346678999
Q ss_pred CCCCEEEEEECC---CEEEEEecCCceeccccccccceeeeeecC-CCEEEEEEcCCeEEEEEecCCCc
Q 003459 237 PDGRTLLCGLHE---SLKVFSWEPIRCHDAVDVGWSRLSDLNVHE-GKLLGCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 237 pdg~~Lasgs~d---~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~-g~lLatg~~Dg~V~IWdvd~~~~ 301 (818)
+|..|+++-.+. .+-+||+...+.+.++ ..-.++..+.++. ...|+.+.....+++|...+...
T Consensus 328 ~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~ 395 (447)
T KOG4497|consen 328 CDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRV 395 (447)
T ss_pred CCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceE
Confidence 999999988766 3667777666665554 3334555566544 45677777778899998877443
No 235
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.40 E-value=2.3e-10 Score=127.95 Aligned_cols=270 Identities=13% Similarity=0.070 Sum_probs=179.6
Q ss_pred EEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeC
Q 003459 32 LVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP 111 (818)
Q Consensus 32 Latgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fsp 111 (818)
+++-..+|.|.+.|..+.+.+..+......-..+.|++||+++++++.||.|.++|+.+++.+.++.. .....++++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~ 87 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSP 87 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcC
Confidence 45566789999999999999999986554445578999999999999999999999999999999984 34568899999
Q ss_pred CCCEEEEEE-CCCcEEEEECCCCeEEEEEecC-------CCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEE-EE
Q 003459 112 FGEFFASGS-LDTNLKIWDIRKKGCIHTYKGH-------TRGVNAIRFTPDGRWVVSGGE-DNTVKLWDLTAGKLLH-DF 181 (818)
Q Consensus 112 dg~~Lasgs-~Dg~I~IwDl~~~~~i~~l~~h-------~~~V~~l~fspdg~~L~sgs~-Dg~I~IwDl~t~~~i~-~~ 181 (818)
+|+++++++ ..+.+.++|.++.+.++.+... ...+..+..+|....++..-. .+.|.+.|....+.+. ..
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 999988776 5899999999999998887642 345778888888885555544 5889888987654332 22
Q ss_pred ecCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeEEEEeC----CCCCCeeEE-------EEeC--CCCEE-EEEE
Q 003459 182 KCHEGQIQCIDFHPHEFLLATG-SADRTVKFWDLETFELIGSAG----PETSGVRCL-------TFNP--DGRTL-LCGL 246 (818)
Q Consensus 182 ~~h~~~I~sv~fspdg~~Lasg-s~Dg~I~IwDl~t~~~i~~~~----~~~~~I~sl-------~fsp--dg~~L-asgs 246 (818)
...........|+|++++++.+ ..+..|-++|.++++.+..+. +|..++..+ .|.. .+... ..-+
T Consensus 168 i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig 247 (369)
T PF02239_consen 168 IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG 247 (369)
T ss_dssp EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccccc
Confidence 2234567789999999877664 567799999999998877653 222333322 1221 22222 2223
Q ss_pred CCCEEEEEecCCceeccccccccceeeeeecCCCEEEEE----EcCCeEEEEEecCCCce
Q 003459 247 HESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCS----YNQSCVGVWVVDISRIE 302 (818)
Q Consensus 247 ~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg----~~Dg~V~IWdvd~~~~~ 302 (818)
.+.+.+|+....+..+.+......+.....++++++.+. ...+.|.++|.++-++.
T Consensus 248 ~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~ 307 (369)
T PF02239_consen 248 TDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVV 307 (369)
T ss_dssp --TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEE
T ss_pred CCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCccee
Confidence 444556777777777777777776666667899999887 44588999998887543
No 236
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.40 E-value=3.3e-11 Score=128.18 Aligned_cols=243 Identities=18% Similarity=0.238 Sum_probs=183.1
Q ss_pred CCCEEEEEEeeCCCcE-EEEEeCCCeEEEEECCCCceEEEe------cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 16 SSTVNCLKIGRKSSRV-LVTGGEDHKVNLWAIGKPNAILSL------SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 16 ~~~V~~lafsp~~~~l-Latgs~Dg~V~lWdl~~~~~i~~l------~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
...|..++|.-++..- +.....|..+..+.+..+.+...+ ...+..|..++.. ++ .|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg-~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG-TLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC-EEEEEecCCcEEEEec
Confidence 3567788887654433 444436666777777655544432 3345566666653 34 5667788999999998
Q ss_pred CCCe----EEEEEcCCCCCeEEEEEeCCCCE-EEEEECC--CcEEEEECCCCeEEEEEecCC---------CCeEEEEEc
Q 003459 89 EEAK----IVRTLTGHRSNCISVDFHPFGEF-FASGSLD--TNLKIWDIRKKGCIHTYKGHT---------RGVNAIRFT 152 (818)
Q Consensus 89 ~t~~----~v~~l~~h~~~V~sv~fspdg~~-Lasgs~D--g~I~IwDl~~~~~i~~l~~h~---------~~V~~l~fs 152 (818)
+.+. .+..+..+ ..+..+.-++...+ +++|+.. ..+.+||+.+.+.++.-+.-. -.++.+.|.
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 8432 23333323 45666777766655 5558888 889999999887666544321 236688898
Q ss_pred CC--CCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE-eCCCCC
Q 003459 153 PD--GRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-AGPETS 228 (818)
Q Consensus 153 pd--g~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~-~~~~~~ 228 (818)
+. ...|++++.-+.+++||.+.+ +++.+|...+.+++++...|.++++++|..-|.+..||++.++.+.. +.+..+
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 86 789999999999999999865 57888888899999999999999999999999999999999999887 888899
Q ss_pred CeeEEEEeCCCCEEEEEECC-CEEEEEecCCcee
Q 003459 229 GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH 261 (818)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~ 261 (818)
.|++|..+|.+++|++++-| .++|||.++.+..
T Consensus 292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 99999999999999976655 6999999985543
No 237
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=3.7e-11 Score=126.43 Aligned_cols=194 Identities=16% Similarity=0.321 Sum_probs=149.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-CCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCC---
Q 003459 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKK--- 133 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~-~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~--- 133 (818)
...+..++|++.-..++++..|-.|++||-.. ++...++ ..+..|.+++|-|.+. .|++|+..| |.+|.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34678899999777788999999999999766 4444554 2356899999999764 688888766 999976421
Q ss_pred -e----------EEEEEecCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEE
Q 003459 134 -G----------CIHTYKGHTRGVNAIRFTPDGRWVVSGGED-NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLA 201 (818)
Q Consensus 134 -~----------~i~~l~~h~~~V~~l~fspdg~~L~sgs~D-g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~La 201 (818)
. .+....+| .+|++++|.+||..+++++.+ ..|.|||..++..+-......+.+.-+.|+||+.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 1 12233455 579999999999999998864 6799999999877665544567889999999999999
Q ss_pred EEeCCCeEEEEEC-CCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 202 TGSADRTVKFWDL-ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 202 sgs~Dg~I~IwDl-~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
+++-|+..++|+. +++....-.. ..+.|...+|+|+|++|+....+.-++|.+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~ 309 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLT 309 (445)
T ss_pred Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEe
Confidence 9999999999954 4444443333 3458999999999999998877777788764
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.38 E-value=3.4e-09 Score=117.87 Aligned_cols=271 Identities=15% Similarity=0.252 Sum_probs=177.4
Q ss_pred EEEEeCC----CeEEEEEC--CCCceE--EEecCCCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCC--e--EEE
Q 003459 32 LVTGGED----HKVNLWAI--GKPNAI--LSLSGHTSGIDSVSFDSSEVLVAAGAA----SGTIKLWDLEEA--K--IVR 95 (818)
Q Consensus 32 Latgs~D----g~V~lWdl--~~~~~i--~~l~~h~~~V~~l~fspdg~~Lasgs~----DG~I~IWDl~t~--~--~v~ 95 (818)
++.|+.. +.|++|++ .+++.. ..+ ........+++++++++|++... +|.|..|++... + .+.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~ 80 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN 80 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence 3445554 68999988 333322 222 13345677899999999999877 579999988764 3 333
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCC-CeEEEE---Ee----------cCCCCeEEEEEcCCCCEEEE
Q 003459 96 TLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRK-KGCIHT---YK----------GHTRGVNAIRFTPDGRWVVS 160 (818)
Q Consensus 96 ~l~~h~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~-~~~i~~---l~----------~h~~~V~~l~fspdg~~L~s 160 (818)
.........+.++++|++++|+++.. +|.|.+|++.. +..... +. .......++.|+|+|+++++
T Consensus 81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 34334455678999999999998875 88999999987 332222 21 12355789999999999988
Q ss_pred EEC-CCeEEEEECCCCe--EE--EEEec-CCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECC--CCe--EEEEeCC----
Q 003459 161 GGE-DNTVKLWDLTAGK--LL--HDFKC-HEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLE--TFE--LIGSAGP---- 225 (818)
Q Consensus 161 gs~-Dg~I~IwDl~t~~--~i--~~~~~-h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~--t~~--~i~~~~~---- 225 (818)
... ...|.+|++.... .. ..+.. ....-..+.|+|+++++++.. .++.|.+|++. ++. .+..+..
T Consensus 161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence 764 3479999987654 32 22332 345678999999998886665 57789999988 443 2222211
Q ss_pred C--CCCeeEEEEeCCCCEEEEEECC--CEEEEEecCC--c--eeccccccccceeeee-ecCCCEEEEEE-cCCeEEEEE
Q 003459 226 E--TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPI--R--CHDAVDVGWSRLSDLN-VHEGKLLGCSY-NQSCVGVWV 295 (818)
Q Consensus 226 ~--~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~--~--~~~~~~~~~~~v~~l~-~~~g~lLatg~-~Dg~V~IWd 295 (818)
. ......|.++|||++|+++..+ .|.+|+++.. + ....+......-..+. .++|++|+++. .++.|.+|+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 1 1257889999999999987544 6999999543 2 2233444333233444 48899988776 567999998
Q ss_pred ec--CCCcee
Q 003459 296 VD--ISRIEP 303 (818)
Q Consensus 296 vd--~~~~~~ 303 (818)
++ ++.+..
T Consensus 321 ~d~~tG~l~~ 330 (345)
T PF10282_consen 321 IDPDTGKLTP 330 (345)
T ss_dssp EETTTTEEEE
T ss_pred EeCCCCcEEE
Confidence 86 445544
No 239
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=2.6e-10 Score=129.84 Aligned_cols=204 Identities=15% Similarity=0.148 Sum_probs=145.9
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~ 115 (818)
..|.++|... .....+..+...+....|+|+|++|+.+... ..|++||+.+++.... ..+...+.+++|+|+|+.
T Consensus 170 ~~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 3578888753 3345555677788999999999999887654 4799999998865443 335556677999999997
Q ss_pred EEEE-ECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCEE
Q 003459 116 FASG-SLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQ 189 (818)
Q Consensus 116 Lasg-s~Dg--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~ 189 (818)
|+.. +.++ .|++||+.++.. ..+..+........|+|||++|+.++.. + .|++||+.+++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7654 4343 699999987654 3344455555677999999998876653 3 6888898877643 3443455677
Q ss_pred EEEEeCCCCEEEEEeCCC---eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003459 190 CIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 190 sv~fspdg~~Lasgs~Dg---~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
...|+|+|.+|+.++.++ .|.+||+.++....... . .......|+|||++|+....+
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~-~-~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD-T-GLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-C-CCCCCceECCCCCEEEEEEeC
Confidence 889999999999988776 89999998865432222 1 223556899999998876544
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.34 E-value=4.9e-09 Score=116.67 Aligned_cols=243 Identities=21% Similarity=0.337 Sum_probs=164.7
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeC----CCeEEEEECCCC--c--eEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGE----DHKVNLWAIGKP--N--AILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTIKL 85 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~----Dg~V~lWdl~~~--~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I~I 85 (818)
-......++++|+ +++|++..+ +|.|..|++... + .+............+++++++++|+++.. +|.|.+
T Consensus 35 ~~~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 35 EGENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp ESSSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 3445667889984 556666655 579999998654 2 23333323455678999999999999875 899999
Q ss_pred EECCC-CeEEEE---Ec----------CCCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCCCe--EE--EEEe-cCCCC
Q 003459 86 WDLEE-AKIVRT---LT----------GHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKG--CI--HTYK-GHTRG 145 (818)
Q Consensus 86 WDl~t-~~~v~~---l~----------~h~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~~--~i--~~l~-~h~~~ 145 (818)
+++.. +..... +. .......++.|+|+++++++... ...|++|++.... .. ..+. .....
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 99987 443332 21 12345789999999998888754 4579999987654 21 2222 34456
Q ss_pred eEEEEEcCCCCEEEEEEC-CCeEEEEECC--CCeE--EEEEecC------CCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Q 003459 146 VNAIRFTPDGRWVVSGGE-DNTVKLWDLT--AGKL--LHDFKCH------EGQIQCIDFHPHEFLLATGS-ADRTVKFWD 213 (818)
Q Consensus 146 V~~l~fspdg~~L~sgs~-Dg~I~IwDl~--t~~~--i~~~~~h------~~~I~sv~fspdg~~Lasgs-~Dg~I~IwD 213 (818)
-+.+.|+|+++++++..+ ++.|.+|++. .+.. +..+... ......|.++|+|++|+++. .++.|.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 889999999999877765 5779999888 4432 2223211 12578899999999888776 567899999
Q ss_pred CC--CC--eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCC
Q 003459 214 LE--TF--ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPI 258 (818)
Q Consensus 214 l~--t~--~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~ 258 (818)
+. ++ +.+..+.......+.+.|+|+|++|+++..+ .|.+|+++..
T Consensus 274 ~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp ECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred EecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 93 23 3444444444558999999999999998755 5999988643
No 241
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=4.1e-10 Score=129.03 Aligned_cols=223 Identities=11% Similarity=0.066 Sum_probs=147.8
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCC--CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECCC--eE
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGED--HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAASG--TI 83 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~D--g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Las-gs~DG--~I 83 (818)
.+.+..|...+...+|+|++..++++...+ ..|.+|++.+++... +....+.+....|+|+|+.|+. ...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 345667778899999999665544544333 468999998776543 3333445567899999998874 44444 68
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-C--CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003459 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-D--TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~-D--g~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~s 160 (818)
++||+.+++... +..+........|+|+|+.|+..+. + ..|++||+.+++... +...........|+|||++|+.
T Consensus 270 y~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEE
Confidence 889998876543 4445555667899999998777654 3 368888987776433 2222233445789999999988
Q ss_pred EECC-C--eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003459 161 GGED-N--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLT 234 (818)
Q Consensus 161 gs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D---g~I~IwDl~t~~~i~~~~~~~~~I~sl~ 234 (818)
...+ + .|.+||+.+++... +.. ........|+|+|.+++..+.+ ..|.++++... ....+..+.+.+...+
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~ 424 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQGEVREPS 424 (430)
T ss_pred EEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCc
Confidence 7654 3 58899998876433 221 2222356899999988877654 35777787543 3333434445566677
Q ss_pred EeC
Q 003459 235 FNP 237 (818)
Q Consensus 235 fsp 237 (818)
|+|
T Consensus 425 ws~ 427 (430)
T PRK00178 425 WSP 427 (430)
T ss_pred cCC
Confidence 776
No 242
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=8.4e-10 Score=126.42 Aligned_cols=203 Identities=13% Similarity=0.052 Sum_probs=140.4
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEE
Q 003459 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (818)
Q Consensus 40 ~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~L 116 (818)
.|.++|....+ ...+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +......+....|+|+|++|
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEE
Confidence 47777876443 45555677789999999999998876644 469999999886544 33334445578999999987
Q ss_pred EE-EECCC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEecCCCCEEE
Q 003459 117 AS-GSLDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---NTVKLWDLTAGKLLHDFKCHEGQIQC 190 (818)
Q Consensus 117 as-gs~Dg--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D---g~I~IwDl~t~~~i~~~~~h~~~I~s 190 (818)
+. .+.+| .|++||+.++... .+..+........|+|||+.|+..+.. ..|+++|+.+++... +.........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccc
Confidence 74 44444 6889999887643 454455556678999999988776643 358888988776433 2222233445
Q ss_pred EEEeCCCCEEEEEeCC-C--eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003459 191 IDFHPHEFLLATGSAD-R--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 191 v~fspdg~~Lasgs~D-g--~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
..|+|+|.+|+..+.+ + .|.+||+.+++....... .......|+|||++++....+
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec
Confidence 7899999999887653 2 588999988765332222 222356899999999876543
No 243
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=5.9e-10 Score=126.87 Aligned_cols=220 Identities=12% Similarity=0.108 Sum_probs=148.1
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCC---CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCC--e
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGED---HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASG--T 82 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~D---g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG--~ 82 (818)
.+.+..+...+...+|+|++ +.|+.+..+ ..|++||+.+++... +..+...+.+++|+|+++.|+.. +.++ .
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred CEEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 44566677789999999955 455555433 479999998776543 33455667789999999877654 4343 5
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D-g--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~ 159 (818)
|++||+.+++... +..+........|+|+|++|+..+.. + .|++||+.+++. ..+..+...+....|+|+|++|+
T Consensus 260 i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 260 IYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred EEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEE
Confidence 8999998876543 44454445577899999988776543 3 688889887664 34444556677889999999999
Q ss_pred EEECCC---eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCeEEEEeCCCCCCeeEE
Q 003459 160 SGGEDN---TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETFELIGSAGPETSGVRCL 233 (818)
Q Consensus 160 sgs~Dg---~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg---~I~IwDl~t~~~i~~~~~~~~~I~sl 233 (818)
.++.++ .|.+||+.++... .+.. ........|+|+|.+|+..+.++ .+++++.. ++....+....+.+..+
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~ 414 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREP 414 (417)
T ss_pred EEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCC
Confidence 988776 7999999876543 2222 22334568999999888877654 45565544 44444444333444444
Q ss_pred EE
Q 003459 234 TF 235 (818)
Q Consensus 234 ~f 235 (818)
.|
T Consensus 415 ~w 416 (417)
T TIGR02800 415 AW 416 (417)
T ss_pred CC
Confidence 44
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=5.7e-10 Score=124.47 Aligned_cols=187 Identities=19% Similarity=0.265 Sum_probs=160.2
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEcC---CCCCeEEEEEe------C--------------CCCEEEEEECCCcE
Q 003459 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTG---HRSNCISVDFH------P--------------FGEFFASGSLDTNL 125 (818)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~---h~~~V~sv~fs------p--------------dg~~Lasgs~Dg~I 125 (818)
+...|+|....||.+++||...++....|.. -.+.+.+..|. | +...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567899999999999999999988777753 23445555553 1 23468888899999
Q ss_pred EEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEE
Q 003459 126 KIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG 203 (818)
Q Consensus 126 ~IwDl~~~~~i~~l~--~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasg 203 (818)
.+|++..++.-..+. .|.+.|.++.++.+-..|.+++.|+.+..|+....+.+..+++....+.+++.+|||..++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999888776 588999999999998999999999999999999999999999888899999999999999998
Q ss_pred eCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCC-----CCEEEEEE--CCCEEEEEecC
Q 003459 204 SADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD-----GRTLLCGL--HESLKVFSWEP 257 (818)
Q Consensus 204 s~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspd-----g~~Lasgs--~d~I~Vwd~~~ 257 (818)
+ +.|++||+++++.+..|.+|.++|+++.|..+ |.++.++. +..+.+|-.+.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 6 78999999999999999999999999999887 78887653 34688887765
No 245
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.3e-09 Score=124.60 Aligned_cols=225 Identities=15% Similarity=0.077 Sum_probs=145.5
Q ss_pred EecCCCCEEEEEEeeCCCc--EEEEEeCCC--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC-CC----e
Q 003459 12 FVAHSSTVNCLKIGRKSSR--VLVTGGEDH--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-SG----T 82 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~--lLatgs~Dg--~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG----~ 82 (818)
+..+...+..-+|+|++.. ++++...+| .|++.++..++.... ....+......|+|||+.|+..+. +| .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 4444556677899997655 334555544 577778876654332 223445567899999998887653 22 3
Q ss_pred EEEEECCC---CeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCc--EEEEECCC-CeEEEEEecCCCCeEEEEEcCCC
Q 003459 83 IKLWDLEE---AKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTN--LKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDG 155 (818)
Q Consensus 83 I~IWDl~t---~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~--I~IwDl~~-~~~i~~l~~h~~~V~~l~fspdg 155 (818)
+.+|++.. ++.......+.......+|+|||+.|+..+ .+|. |+++++.. +.....+..+...+....|+|||
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 44477765 233333333333446789999999887765 4564 55555542 23344455455567789999999
Q ss_pred CEEEEEECC---CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCeEEEEeCCCCCC
Q 003459 156 RWVVSGGED---NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---DRTVKFWDLETFELIGSAGPETSG 229 (818)
Q Consensus 156 ~~L~sgs~D---g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~---Dg~I~IwDl~t~~~i~~~~~~~~~ 229 (818)
++|+..+.+ ..|.+||+.+++...... ....+....|+|||+.|+.... ...|++||+..++...... ..+.
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~ 416 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGE 416 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCc
Confidence 999877653 369999999887644332 3345678999999998876543 3578999998876544433 3345
Q ss_pred eeEEEEeCCC
Q 003459 230 VRCLTFNPDG 239 (818)
Q Consensus 230 I~sl~fspdg 239 (818)
+...+|+|-.
T Consensus 417 ~~~p~Ws~~~ 426 (428)
T PRK01029 417 KRFPSWGAFP 426 (428)
T ss_pred ccCceecCCC
Confidence 6777887753
No 246
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=7.9e-10 Score=127.20 Aligned_cols=220 Identities=11% Similarity=0.100 Sum_probs=142.8
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCC--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEE-EECCCe--EEEE
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAA-GAASGT--IKLW 86 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg--~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Las-gs~DG~--I~IW 86 (818)
+..+...+.+..|+|++..++++...++ .|++||+.+++... +...........|+|||+.|+. .+.+|. |++|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 3344556788999996655555544443 58888987776432 2222333457899999997765 455664 8888
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~-Dg--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~ 163 (818)
|+.+++.. .+..+........|+|+|++|+..+. ++ .|+++|+.+++... +..........+|+|||++|+..+.
T Consensus 292 dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEe
Confidence 98877654 34445556678899999998877654 33 57777887776433 2222223345789999999887765
Q ss_pred C-C--eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC-C--eEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003459 164 D-N--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD-R--TVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (818)
Q Consensus 164 D-g--~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D-g--~I~IwDl~t~~~i~~~~~~~~~I~sl~fsp 237 (818)
+ + .|.++|+.+++... +... .......|+|+|..|+..+.+ | .+++++.. +.....+..+.+.+...+|+|
T Consensus 370 ~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred cCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 3 3 46678888876432 2221 122345799999988776543 3 47778874 555555555556677778876
No 247
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=2.8e-09 Score=118.25 Aligned_cols=276 Identities=12% Similarity=0.188 Sum_probs=179.4
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-----ECC-----CeEEEE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-----AAS-----GTIKLW 86 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-----s~D-----G~I~IW 86 (818)
.+++..++++ ++++++.+ .+..+.|++......+.+...- .+.++.|+|.+.+|.+- ..+ -.+.+|
T Consensus 35 ~~~~v~~~S~-~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 35 RPCNVFAYSN-NGRLFAYS-DNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CcceeEEEcC-CCcEEEEE-cCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 3456777887 77766655 5678999998877655544432 78999999999988762 112 347799
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC--CEEEE----
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG--RWVVS---- 160 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg--~~L~s---- 160 (818)
+++++.....+..-...-++..|+.|..+.+-- ..+.+++|++...+.+.. +-|...|..+.++|.+ ..+++
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccC
Confidence 999966555554333333678888776543322 345688888765332211 1133445555555431 11111
Q ss_pred -EECCC---------------------------------------------------------eEEEEECCCCeEEEEEe
Q 003459 161 -GGEDN---------------------------------------------------------TVKLWDLTAGKLLHDFK 182 (818)
Q Consensus 161 -gs~Dg---------------------------------------------------------~I~IwDl~t~~~i~~~~ 182 (818)
.|.-+ .++++++........+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 11112 34444443222222222
Q ss_pred cCCCCEEEEEEeCCCCEE--EEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC----CEEEEEec
Q 003459 183 CHEGQIQCIDFHPHEFLL--ATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWE 256 (818)
Q Consensus 183 ~h~~~I~sv~fspdg~~L--asgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd~~ 256 (818)
..++|.++.|+|++.-+ +-|-.--.+.|||++ ++++..+ ..++-+++-|+|.|++|+.++-+ .+.|||..
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~ 344 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP 344 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence 36899999999998544 445566789999987 5566555 34667899999999999866543 59999999
Q ss_pred CCceeccccccccceeeeeecCCCEEEEEEc------CCeEEEEEecCCCcee
Q 003459 257 PIRCHDAVDVGWSRLSDLNVHEGKLLGCSYN------QSCVGVWVVDISRIEP 303 (818)
Q Consensus 257 ~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~------Dg~V~IWdvd~~~~~~ 303 (818)
..+++..+...+..+..+. +||+++.++.. |+.++||+..+..+-.
T Consensus 345 n~K~i~~~~a~~tt~~eW~-PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~ 396 (566)
T KOG2315|consen 345 NRKLIAKFKAANTTVFEWS-PDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE 396 (566)
T ss_pred chhhccccccCCceEEEEc-CCCcEEEEEeccccEEecCCeEEEEecCceeeh
Confidence 9999888888877654443 89999887765 7899999998877543
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=4.6e-09 Score=120.13 Aligned_cols=219 Identities=15% Similarity=0.067 Sum_probs=139.1
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCE--E-EEEECC--CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL--V-AAGAAS--GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~--L-asgs~D--G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg 113 (818)
..|.+.|.+.++. ..+......+..-.|+|||+. + ++...+ ..|++.++..++...... ..+......|+|||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCC
Confidence 3577777654443 345445556677899999974 2 233333 468888998776543332 44455678999999
Q ss_pred CEEEEEEC-CC----cEEEEECCCC---eEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCe--EEEEECCC-CeEEEEE
Q 003459 114 EFFASGSL-DT----NLKIWDIRKK---GCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNT--VKLWDLTA-GKLLHDF 181 (818)
Q Consensus 114 ~~Lasgs~-Dg----~I~IwDl~~~---~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~--I~IwDl~t-~~~i~~~ 181 (818)
+.|+..+. +| .+.+|++..+ ........+.......+|+|||++|+..+ .+|. |+++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 98887653 22 3444777652 32222322233446789999999888766 3564 55555542 2334444
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC----CEEEEE
Q 003459 182 KCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFS 254 (818)
Q Consensus 182 ~~h~~~I~sv~fspdg~~Lasgs~D---g~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd 254 (818)
..+...+....|+|||+.|+..+.+ ..|++||+.+++...... ....+....|+|||++|+..... .+.+++
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 4445567789999999988876543 479999999887654332 23456789999999998854332 366666
Q ss_pred ecCCce
Q 003459 255 WEPIRC 260 (818)
Q Consensus 255 ~~~~~~ 260 (818)
++.++.
T Consensus 402 l~~g~~ 407 (428)
T PRK01029 402 LITKKT 407 (428)
T ss_pred CCCCCE
Confidence 655543
No 249
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=4e-09 Score=121.42 Aligned_cols=202 Identities=16% Similarity=0.087 Sum_probs=135.5
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEE
Q 003459 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (818)
Q Consensus 40 ~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~L 116 (818)
.|.++|....+. ..+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++.... ...........|+|+|+.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 577778654433 4455567788999999999988876543 3689999988765332 2223334578999999987
Q ss_pred EE-EECCCc--EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEecCCCCEEE
Q 003459 117 AS-GSLDTN--LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DN--TVKLWDLTAGKLLHDFKCHEGQIQC 190 (818)
Q Consensus 117 as-gs~Dg~--I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~-Dg--~I~IwDl~t~~~i~~~~~h~~~I~s 190 (818)
+. .+.+|. |++||+.+++. ..+..+.......+|+|||++|+..+. ++ .|+++|+.+++.... .........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcC
Confidence 65 455664 88889887764 344445555678899999998887664 33 577788887764332 212223345
Q ss_pred EEEeCCCCEEEEEeCC-C--eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003459 191 IDFHPHEFLLATGSAD-R--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 191 v~fspdg~~Lasgs~D-g--~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (818)
..|+|+|++|+..+.+ + .|.++|+.+++....... .......|+|||+.|+....
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~--~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST--RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC--CCCCCceECCCCCEEEEEEe
Confidence 7899999988876653 3 566788888765332221 12234579999999886543
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.5e-09 Score=121.29 Aligned_cols=187 Identities=15% Similarity=0.273 Sum_probs=157.5
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecC---CCCCeEEEEEc--------------------CCCCEEEEEECCCeEE
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSG---HTSGIDSVSFD--------------------SSEVLVAAGAASGTIK 84 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~---h~~~V~~l~fs--------------------pdg~~Lasgs~DG~I~ 84 (818)
...++|....||.+++|+..+++....+.. -++..++..|. .+...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 567899999999999999998887776653 23344555552 1334788899999999
Q ss_pred EEECCCCeEEEEEc--CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003459 85 LWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 85 IWDl~t~~~v~~l~--~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs 162 (818)
+|++..|+....+. .|.+.|.++.++.+-..|.+++.|+.+..|+...+..+..++.....+.+++.+|||..+++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 99999999988886 6899999999998888999999999999999999999999999889999999999999999885
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCC-----CCEEEE-EeCCCeEEEEECCC
Q 003459 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-----EFLLAT-GSADRTVKFWDLET 216 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspd-----g~~Las-gs~Dg~I~IwDl~t 216 (818)
+.|++||+.+++.+..|.+|.++|.++.|--+ |.++.+ ...+..+.+|-++.
T Consensus 164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 68999999999999999999999999999876 555544 44566677886654
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.23 E-value=1.9e-10 Score=135.06 Aligned_cols=195 Identities=23% Similarity=0.366 Sum_probs=156.3
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC----CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS----GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~----~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~ 93 (818)
.|....+.. ....++.+..+..+.+||...+.....+..... ...-+.++++.-++++|+.-|.|.+|++...+.
T Consensus 89 wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 89 WIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred cccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 344344444 334577788888999999876666555543221 112233467778999999999999999874443
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172 (818)
Q Consensus 94 v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~-~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl 172 (818)
-..+.+|.+.|.++.|+.+|.++++.+.|.++++|++.+.+... ..-+|...|..++|.|+ .+++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 33688999999999999999999999999999999999988766 66789999999999988 8999999999999976
Q ss_pred CCCeEEEEEecCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 003459 173 TAGKLLHDFKCHEG-QIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 173 ~t~~~i~~~~~h~~-~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t 216 (818)
. ++.+..+..|.+ .|+.++..++...+++++.|+.+++||+..
T Consensus 246 ~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 N-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 5 556667777754 699999999999999999999999999754
No 252
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.20 E-value=1.6e-08 Score=113.85 Aligned_cols=263 Identities=13% Similarity=0.052 Sum_probs=171.2
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDF 109 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~f 109 (818)
..+++++.+|.|..+|..+++.+..+............ ++..+++++.+|.+..||..+|+.+...... ..+.+...
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~ 142 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPL 142 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCE
Confidence 35778888899999999999988876644332222222 4667888889999999999999988776532 22222111
Q ss_pred eCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeE-----EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC
Q 003459 110 HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVN-----AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH 184 (818)
Q Consensus 110 spdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~-----~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h 184 (818)
. .+..++.++.+|.|+.||..+++.+..+......+. ...+ .+..++.+..+|.+..+|..+|+.+......
T Consensus 143 v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~ 219 (377)
T TIGR03300 143 V-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVA 219 (377)
T ss_pred E-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccc
Confidence 1 355777888899999999999998887764332211 1112 2346788888999999999999887765421
Q ss_pred CC----C---EEEEEEeC--CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC-CCEEEEE
Q 003459 185 EG----Q---IQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFS 254 (818)
Q Consensus 185 ~~----~---I~sv~fsp--dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd 254 (818)
.. . ...+.-+| .+..+++++.+|.++.||.++++.+...... ....... ++..++++.. +.+..+|
T Consensus 220 ~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 220 LPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALD 295 (377)
T ss_pred cCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEE
Confidence 10 0 00011111 2457778888999999999999887765421 1122222 3455555544 4688888
Q ss_pred ecCCceeccc-cccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 255 WEPIRCHDAV-DVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 255 ~~~~~~~~~~-~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
..+++..... ........... ..+..++++..+|.|++|+.+++++.-
T Consensus 296 ~~tG~~~W~~~~~~~~~~ssp~-i~g~~l~~~~~~G~l~~~d~~tG~~~~ 344 (377)
T TIGR03300 296 RRSGSELWKNDELKYRQLTAPA-VVGGYLVVGDFEGYLHWLSREDGSFVA 344 (377)
T ss_pred CCCCcEEEccccccCCccccCE-EECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 8777654333 22221112212 245688888999999999998887654
No 253
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.20 E-value=4.2e-08 Score=107.92 Aligned_cols=259 Identities=10% Similarity=0.021 Sum_probs=171.6
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEcCCC-------
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA----------SGTIKLWDLEEAKIVRTLTGHR------- 101 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~----------DG~I~IWDl~t~~~v~~l~~h~------- 101 (818)
++|.+.|..+.+.+..+..-..+- .+ ++||++.|+++.. +..|.+||..+.+.+..+....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 899999999999888887544433 35 9999998887765 7899999999999998887322
Q ss_pred CCeEEEEEeCCCCEEEEEE-C-CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEE
Q 003459 102 SNCISVDFHPFGEFFASGS-L-DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT-AGKLL 178 (818)
Q Consensus 102 ~~V~sv~fspdg~~Lasgs-~-Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~-t~~~i 178 (818)
..-..++++|+|+++++.. . +..|.++|+.+++.+..+.-.. ...-+..+.+.. + +-+.||......+. +|+..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTF-F-MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCcc-E-EEeecCceEEEEecCCCceE
Confidence 2234789999999988776 3 6899999999999998887422 222222222222 2 22234443333222 22211
Q ss_pred -EE---EecCCCCE-EEEEEeC-CCCEEEEEeCCCeEEEEECCC-----CeEEEEeCC-------CCCCeeEEEEeCCCC
Q 003459 179 -HD---FKCHEGQI-QCIDFHP-HEFLLATGSADRTVKFWDLET-----FELIGSAGP-------ETSGVRCLTFNPDGR 240 (818)
Q Consensus 179 -~~---~~~h~~~I-~sv~fsp-dg~~Lasgs~Dg~I~IwDl~t-----~~~i~~~~~-------~~~~I~sl~fspdg~ 240 (818)
.. |.....++ ..-.|.+ +|.+++...+ |+|.+.|+.. .+.+..+.. ..+.+.-++++++|+
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11 11100000 0013455 7888888776 9999999543 233322211 123345599999999
Q ss_pred EEEEEEC-----------CCEEEEEecCCceeccccccccceeeeeecCCC-EEEEEE-cCCeEEEEEecCCCcee
Q 003459 241 TLLCGLH-----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK-LLGCSY-NQSCVGVWVVDISRIEP 303 (818)
Q Consensus 241 ~Lasgs~-----------d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~-lLatg~-~Dg~V~IWdvd~~~~~~ 303 (818)
.+++... +.+.++|+.+.+....+.++.........++++ +|.+.. .++.|.+.|+.+.+...
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 9998531 348888888888888887777666666678888 776555 67889999999887655
No 254
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.19 E-value=9.2e-10 Score=115.39 Aligned_cols=245 Identities=20% Similarity=0.310 Sum_probs=173.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----EEEEEcCCC------------CCeEEEEEeCCCC--EEEE
Q 003459 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-----IVRTLTGHR------------SNCISVDFHPFGE--FFAS 118 (818)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~-----~v~~l~~h~------------~~V~sv~fspdg~--~Las 118 (818)
..+-|.++.|...|.+|++|+.+|.|.++.-+... ....++.|. ..|..+.|.++++ .|+.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999654322 333444443 2577889998775 5777
Q ss_pred EECCCcEEEEECCCCeE-----------------------------------EEEE-ecCCCCeEEEEEcCCCCEEEEEE
Q 003459 119 GSLDTNLKIWDIRKKGC-----------------------------------IHTY-KGHTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 119 gs~Dg~I~IwDl~~~~~-----------------------------------i~~l-~~h~~~V~~l~fspdg~~L~sgs 162 (818)
.+.|.+|++|-+..... .+.+ .+|...|.++.++.|+..++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 88999999998753211 0111 2577889999999999988887
Q ss_pred CCCeEEEEECCCCe---EEEEEecCC-----CCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeEEEE----e------
Q 003459 163 EDNTVKLWDLTAGK---LLHDFKCHE-----GQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGS----A------ 223 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~---~i~~~~~h~-----~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~i~~----~------ 223 (818)
.|=.|.+|++.-.. .+..++.+. .-|++..|||. -.+++-.+..|+|++.|++...+... +
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 57889999987432 233333332 35899999996 46777788899999999984322111 1
Q ss_pred ------CCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCC-ceeccc----------------cccccceeeeeecCCC
Q 003459 224 ------GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI-RCHDAV----------------DVGWSRLSDLNVHEGK 280 (818)
Q Consensus 224 ------~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~-~~~~~~----------------~~~~~~v~~l~~~~g~ 280 (818)
..--..|..+.|+++|+|+++-..-++++||++.. +....+ +.-+..+.+....++.
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~ 342 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS 342 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc
Confidence 11123478899999999999998889999999533 221111 2234444455556778
Q ss_pred EEEEEEcCCeEEEEEecCCCcee
Q 003459 281 LLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 281 lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
.+.+|+..+..++++++-+....
T Consensus 343 ~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 343 YVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred eEecccccceEEEecCCCCccee
Confidence 99999999999999966666544
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=5.5e-08 Score=103.62 Aligned_cols=262 Identities=19% Similarity=0.275 Sum_probs=175.0
Q ss_pred CCeEEEEECCCCce---EEEecCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCC--CeEEE--EEcCCCCCeEEE
Q 003459 38 DHKVNLWAIGKPNA---ILSLSGHTSGIDSVSFDSSEVLVAAGAAS---GTIKLWDLEE--AKIVR--TLTGHRSNCISV 107 (818)
Q Consensus 38 Dg~V~lWdl~~~~~---i~~l~~h~~~V~~l~fspdg~~Lasgs~D---G~I~IWDl~t--~~~v~--~l~~h~~~V~sv 107 (818)
+.-|++|++.+..- ...+-.+...++-|+|++++++|+++..+ |.|..|.++. |+... .......+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46699999863321 12223466788999999999999887654 6777777764 54322 122223344789
Q ss_pred EEeCCCCEEEEEEC-CCcEEEEECCCCeE----EEEEecCCCC----------eEEEEEcCCCCEEEEEECC-CeEEEEE
Q 003459 108 DFHPFGEFFASGSL-DTNLKIWDIRKKGC----IHTYKGHTRG----------VNAIRFTPDGRWVVSGGED-NTVKLWD 171 (818)
Q Consensus 108 ~fspdg~~Lasgs~-Dg~I~IwDl~~~~~----i~~l~~h~~~----------V~~l~fspdg~~L~sgs~D-g~I~IwD 171 (818)
+++++|++++++.. .|.|.++-++.... +..+ .|.+. +....|.|++++|++.+-. ..|.+|+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 99999999888875 57899998865322 2222 24444 8899999999999988643 4699999
Q ss_pred CCCCeEEEEEe---cCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCC-eEEEEeCC---------CCCCeeEEEEeC
Q 003459 172 LTAGKLLHDFK---CHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETF-ELIGSAGP---------ETSGVRCLTFNP 237 (818)
Q Consensus 172 l~t~~~i~~~~---~h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t~-~~i~~~~~---------~~~~I~sl~fsp 237 (818)
+..|++...-. .....-..|.|||++++.++.+ .+++|.+|..... ..+..++. ...+...|.+++
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 99876433211 1234568999999999887766 5899999998873 22222211 134567889999
Q ss_pred CCCEEEEEE--CCCEEEEEecCCcee----ccccccccceeeeee-cCCCEEEEEEcC-CeEEEEEecCCC
Q 003459 238 DGRTLLCGL--HESLKVFSWEPIRCH----DAVDVGWSRLSDLNV-HEGKLLGCSYNQ-SCVGVWVVDISR 300 (818)
Q Consensus 238 dg~~Lasgs--~d~I~Vwd~~~~~~~----~~~~~~~~~v~~l~~-~~g~lLatg~~D-g~V~IWdvd~~~ 300 (818)
||++|+++. .+.|.+|.+++.... .........-.++.+ +.|++|+++..+ ..|.+|..+-..
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 999999884 346889988876432 122222222334443 667888777665 568888665433
No 256
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=7.9e-11 Score=128.78 Aligned_cols=241 Identities=18% Similarity=0.328 Sum_probs=175.3
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-------CCceEEEecCCCCCeEEEEEcCCCCEEEEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-------KPNAILSLSGHTSGIDSVSFDSSEVLVAAGA 78 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~-------~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs 78 (818)
...+..|.||+..|..++--- +.+-+++++.|.+|++|.+. +..+..++..|+.+|..+.|-.+-++++++
T Consensus 725 ~irL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc- 802 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC- 802 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-
Confidence 356788999999999987543 66679999999999999873 345778889999999999999998888765
Q ss_pred CCCeEEEEECCCCeEEEEEc-----CCCCCeEEEEEeCCCCEEEEE-ECCCcEEEEECCCCeEEEEEe-----cCCCCeE
Q 003459 79 ASGTIKLWDLEEAKIVRTLT-----GHRSNCISVDFHPFGEFFASG-SLDTNLKIWDIRKKGCIHTYK-----GHTRGVN 147 (818)
Q Consensus 79 ~DG~I~IWDl~t~~~v~~l~-----~h~~~V~sv~fspdg~~Lasg-s~Dg~I~IwDl~~~~~i~~l~-----~h~~~V~ 147 (818)
||-|.+||.--+..+..+. +..+.|.|+.- -+...++.| +...+|+++|.+.++....++ +...-+.
T Consensus 803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred -cCcceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 8889999987776655332 12233444321 123344444 778999999999888766665 3345689
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEE-EECCCCeEEEEeCCC
Q 003459 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF-WDLETFELIGSAGPE 226 (818)
Q Consensus 148 ~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~I-wDl~t~~~i~~~~~~ 226 (818)
+++..+.|++++++-..|.|.+.|.++|+.+..++..+.....++ .|....|+....|..+.+ |..-.+......++.
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpp 959 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPP 959 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCC
Confidence 999999999999999999999999999999998887666665554 366667888888889988 887766655555444
Q ss_pred CCCeeEEEEeCCCCEEEEEECCC-EEEE
Q 003459 227 TSGVRCLTFNPDGRTLLCGLHES-LKVF 253 (818)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~d~-I~Vw 253 (818)
..+..-+. .-|..|+++..+. +.||
T Consensus 960 pepahflq--svgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 960 PEPAHFLQ--SVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred Ccchhhhh--ccCceeEEeccCcEEEEE
Confidence 33322211 1245556554443 5555
No 257
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=1.3e-09 Score=114.20 Aligned_cols=242 Identities=18% Similarity=0.261 Sum_probs=169.5
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-----eEEEecCCC------------CCeEEEEEcCCCC--EEE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHT------------SGIDSVSFDSSEV--LVA 75 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~-----~i~~l~~h~------------~~V~~l~fspdg~--~La 75 (818)
-.+-|.++.|.. .|.+||||..+|.|.++.-.... ....++.|. ..|..+.|.++++ .++
T Consensus 24 eadiis~vef~~-~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 24 EADIISAVEFDH-YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hhcceeeEEeec-ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 345789999998 77899999999999999653322 222333443 4688899987654 566
Q ss_pred EEECCCeEEEEECCCCeE-----------------------------------EEEE-cCCCCCeEEEEEeCCCCEEEEE
Q 003459 76 AGAASGTIKLWDLEEAKI-----------------------------------VRTL-TGHRSNCISVDFHPFGEFFASG 119 (818)
Q Consensus 76 sgs~DG~I~IWDl~t~~~-----------------------------------v~~l-~~h~~~V~sv~fspdg~~Lasg 119 (818)
..+.|.+|++|.+..... .+.+ ..|.-.|.++.++.|+..++++
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 677899999998753211 1111 2577788999999999999888
Q ss_pred ECCCcEEEEECCCCeE---EEEEecCC-----CCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEE----EEEe----
Q 003459 120 SLDTNLKIWDIRKKGC---IHTYKGHT-----RGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLL----HDFK---- 182 (818)
Q Consensus 120 s~Dg~I~IwDl~~~~~---i~~l~~h~-----~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i----~~~~---- 182 (818)
.|=.|.+|++.--.. +..++.+. .-|++..|+| ..++++..+..|+|++.|++...+- ..|.
T Consensus 183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 467899999864322 23333332 3478889999 4678888889999999999954211 1111
Q ss_pred --------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCeEEEEeCCC------------CCCe---eEEEEeCC
Q 003459 183 --------CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE-TFELIGSAGPE------------TSGV---RCLTFNPD 238 (818)
Q Consensus 183 --------~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~-t~~~i~~~~~~------------~~~I---~sl~fspd 238 (818)
.--..|..+.|+++|+++++-.. -+|++||+. ..+++..+..| ...| ..++|+.+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11245888999999999998753 589999994 45566555444 1222 45789999
Q ss_pred CCEEEEEECC-CEEEEEecCCc
Q 003459 239 GRTLLCGLHE-SLKVFSWEPIR 259 (818)
Q Consensus 239 g~~Lasgs~d-~I~Vwd~~~~~ 259 (818)
+.++++|+.. -.++|+...+.
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cceEecccccceEEEecCCCCc
Confidence 9999999876 48888865443
No 258
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=1.3e-10 Score=141.52 Aligned_cols=198 Identities=20% Similarity=0.401 Sum_probs=165.2
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (818)
++.|-..|.++.=+| ...+.+||+.||.|++|....++.+..+. .-...|+.+.|+.+|+.+..+..||.+.+|...
T Consensus 2204 ~k~~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred eecccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 445667788888888 56688999999999999998888877665 233789999999999999999999999999987
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEE---CCCcEEEEECCC---CeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGS---LDTNLKIWDIRK---KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~~Lasgs---~Dg~I~IwDl~~---~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D 164 (818)
.++....+.|......+.|-. ..+++++ .++.+.+||.-- ..++. ..|.+.++++++-|....|++|+.+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCc
Confidence 667777888999888888874 5666654 468999999642 22344 7899999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC
Q 003459 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP 225 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~ 225 (818)
|.|++||++..++++.++. ++ ...++++|+..|.++||++.....+..+..
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 9999999999988887764 44 567999999999999999998887776643
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=6.4e-09 Score=115.45 Aligned_cols=232 Identities=18% Similarity=0.328 Sum_probs=161.6
Q ss_pred EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC--EEEE-----EECCCeEEEEECCCCe
Q 003459 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV--LVAA-----GAASGTIKLWDLEEAK 92 (818)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~--~Las-----gs~DG~I~IWDl~t~~ 92 (818)
++..|++|+. |++--..+.+.+|++...+.+. ..-|...|..+.++|... .+|+ .+.-+.|+||......
T Consensus 129 W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~ 205 (566)
T KOG2315|consen 129 WVPQFSIDES--LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEG 205 (566)
T ss_pred cccccccchh--hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccc
Confidence 6888887443 4444455779999987643322 233678899999998733 4443 3445689999876322
Q ss_pred EEEEEc---CCCCCeEEEEEeCCCC-EEEEE--ECC---------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003459 93 IVRTLT---GHRSNCISVDFHPFGE-FFASG--SLD---------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (818)
Q Consensus 93 ~v~~l~---~h~~~V~sv~fspdg~-~Lasg--s~D---------g~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~ 157 (818)
.-..+. -....-..+.|++-|. +|+.+ ..| .+++++++....+...+. ..++|+++.|+|+|+-
T Consensus 206 ~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 206 QHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGRE 284 (566)
T ss_pred ccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCE
Confidence 211110 1122234577887776 23322 223 378888988555555554 5789999999999976
Q ss_pred EEE--EECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCCCeeE
Q 003459 158 VVS--GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETSGVRC 232 (818)
Q Consensus 158 L~s--gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D---g~I~IwDl~t~~~i~~~~~~~~~I~s 232 (818)
+++ |..-..+.|||++ ++++..|. +++-+++-|+|.|++|+.++.+ |.|-|||+.+.+++..+.... -+-
T Consensus 285 F~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~ 359 (566)
T KOG2315|consen 285 FAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTV 359 (566)
T ss_pred EEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceE
Confidence 655 4455789999987 66776664 6788999999999999988754 789999999999988886544 367
Q ss_pred EEEeCCCCEEEEEE-------CCCEEEEEecCCce
Q 003459 233 LTFNPDGRTLLCGL-------HESLKVFSWEPIRC 260 (818)
Q Consensus 233 l~fspdg~~Lasgs-------~d~I~Vwd~~~~~~ 260 (818)
+.|+|||.++++++ +++++||++.....
T Consensus 360 ~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 360 FEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred EEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 88999999999875 46899999875443
No 260
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=1.1e-09 Score=128.68 Aligned_cols=196 Identities=16% Similarity=0.253 Sum_probs=156.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCC----eEEEEEeCCCCEEEEEECCCcEEEEECCCCeE
Q 003459 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSN----CISVDFHPFGEFFASGSLDTNLKIWDIRKKGC 135 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~----V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~ 135 (818)
+.|....+..+...++.++.++.+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 34444556667788999999999999999888777766632221 12233455566899999999999999874443
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 003459 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH-DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 136 i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~-~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
-..+.+|.+.|..+.|+-||+++++.++|.++++|++.+.+... ..-+|...++.++|+|+ .+++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 34688999999999999999999999999999999999987766 45579999999999999 9999999999999976
Q ss_pred CCCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC
Q 003459 215 ETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 215 ~t~~~i~~~~~~-~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (818)
. ++.+..+..| ...|+.++..++...++++.+| ++++|++...
T Consensus 246 ~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 246 N-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred c-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 5 4444566666 4468999999888888887766 6999987654
No 261
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=3.3e-09 Score=117.55 Aligned_cols=192 Identities=20% Similarity=0.306 Sum_probs=153.0
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe--
Q 003459 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-- 140 (818)
Q Consensus 63 ~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~-- 140 (818)
..++++.-..-|++++....|+-++++.|..+..|....+.+++|..++...+|++|+.+|.|-.||.+....+.++.
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 455665434345555666789999999999999998888999999999999999999999999999999877665553
Q ss_pred ----cCCC-----CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEeCC--CCEEEEEeCCCe
Q 003459 141 ----GHTR-----GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHPH--EFLLATGSADRT 208 (818)
Q Consensus 141 ----~h~~-----~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sv~fspd--g~~Lasgs~Dg~ 208 (818)
.|.+ .|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-. +..-+|..+.|.+. +..|++. ....
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~ 295 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRI 295 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHH
Confidence 2332 39999999999999999999999999999988776544 23457899999876 4556555 3568
Q ss_pred EEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEec
Q 003459 209 VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWE 256 (818)
Q Consensus 209 I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~ 256 (818)
++|||-.+|+....+.+.. .+..+++-|++-+++++.++. +..|-+.
T Consensus 296 ~kiWd~~~Gk~~asiEpt~-~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 296 LKIWDECTGKPMASIEPTS-DLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred hhhcccccCCceeeccccC-CcCceeeecCCceEEEecCCCcceeEEcc
Confidence 9999999999998887654 499999999999999987764 4444443
No 262
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.13 E-value=2.5e-08 Score=112.18 Aligned_cols=254 Identities=15% Similarity=0.053 Sum_probs=165.0
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeE----
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI---- 105 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~---- 105 (818)
..++.++.+|.+..+|..+++.+....... .+.+.... .+..++.++.+|.|+.||..+|+.+..+......+.
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 457778889999999999999887765322 22211111 345677788899999999999998887764332111
Q ss_pred -EEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC----C---eEEEEEcC--CCCEEEEEECCCeEEEEECCCC
Q 003459 106 -SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR----G---VNAIRFTP--DGRWVVSGGEDNTVKLWDLTAG 175 (818)
Q Consensus 106 -sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~----~---V~~l~fsp--dg~~L~sgs~Dg~I~IwDl~t~ 175 (818)
..... +..++.+..+|.+..+|..+++.+........ . ...+.-+| .+..+++++.+|.++.||..+|
T Consensus 184 ~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 184 ASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred CCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 11122 34778888899999999999987765431110 0 00111111 3567888889999999999999
Q ss_pred eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC-CeeEEEEeCCCCEEEEEECC-CEEEE
Q 003459 176 KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS-GVRCLTFNPDGRTLLCGLHE-SLKVF 253 (818)
Q Consensus 176 ~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~-~I~sl~fspdg~~Lasgs~d-~I~Vw 253 (818)
+.+...... ...... ..+..+++++.+|.|+.+|..+++.+........ ...+... .+..|+++..+ .+.++
T Consensus 262 ~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 262 RVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWL 335 (377)
T ss_pred cEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEE
Confidence 988776521 112222 2456788888999999999999988766532222 2222222 34566666544 58888
Q ss_pred EecCCceeccccccccce-eeeeecCCCEEEEEEcCCeEEEE
Q 003459 254 SWEPIRCHDAVDVGWSRL-SDLNVHEGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 254 d~~~~~~~~~~~~~~~~v-~~l~~~~g~lLatg~~Dg~V~IW 294 (818)
+..+++....+..+...+ ......++ .|..++.||.|+.|
T Consensus 336 d~~tG~~~~~~~~~~~~~~~sp~~~~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 336 SREDGSFVARLKTDGSGIASPPVVVGD-GLLVQTRDGDLYAF 376 (377)
T ss_pred ECCCCCEEEEEEcCCCccccCCEEECC-EEEEEeCCceEEEe
Confidence 888888776666554322 22233444 47788899998876
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=5.8e-09 Score=117.49 Aligned_cols=279 Identities=15% Similarity=0.170 Sum_probs=190.7
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc---------------eEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN---------------AILSLSGHTSGIDSVSFDSSEVLVAAGAA 79 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~---------------~i~~l~~h~~~V~~l~fspdg~~Lasgs~ 79 (818)
......|++|+. ...++++||.||.+++..+++.. .-+++.||...|.-+.|+.+.+.|-+...
T Consensus 13 nnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 345688999998 66689999999999999875431 12457799999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEc--CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE-EEEecCCCCeEEEEEcCCCC
Q 003459 80 SGTIKLWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYKGHTRGVNAIRFTPDGR 156 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~--~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i-~~l~~h~~~V~~l~fspdg~ 156 (818)
+|.|.+|-+-.|.-...+. ..++.|.+++|..+|..++....||.|.+=.++..+.- +.+++ .....+.|++|.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~ 169 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLE 169 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHH
Confidence 9999999988776443332 34567899999999999999999999888776544321 12222 2345788999999
Q ss_pred EEEEEECCCeEEEEECCCC-------eEEEE----EecCCCCEEEEEEe--------CCCCEEEEEeCCCeEEEEECCCC
Q 003459 157 WVVSGGEDNTVKLWDLTAG-------KLLHD----FKCHEGQIQCIDFH--------PHEFLLATGSADRTVKFWDLETF 217 (818)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~-------~~i~~----~~~h~~~I~sv~fs--------pdg~~Lasgs~Dg~I~IwDl~t~ 217 (818)
.++.+-..|.+.+||.... .+... +......|..+.|. |+...|+.+..+|.+.|-.-.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 9988889999999996532 11111 11122346666664 47789999999999988765443
Q ss_pred eEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC--------EEEEEec-CCceeccccccccceeeeeecCCCEEEEEEcC
Q 003459 218 ELIGSAGPETSGVRCLTFNPDGRTLLCGLHES--------LKVFSWE-PIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQ 288 (818)
Q Consensus 218 ~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~--------I~Vwd~~-~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~D 288 (818)
.....+.. .-.+....|+++|..|++++.+. -+|--+. -++....+.+..+.++.+.+..+.+-+.-.-|
T Consensus 250 ~~Pvv~dt-gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~Avd 328 (1189)
T KOG2041|consen 250 PEPVVVDT-GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVD 328 (1189)
T ss_pred CCCeEEec-ccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEEec
Confidence 32222221 25578899999999999775432 1222222 23344556666666777766555444433444
Q ss_pred CeEEEEEec
Q 003459 289 SCVGVWVVD 297 (818)
Q Consensus 289 g~V~IWdvd 297 (818)
+.|++=++.
T Consensus 329 sfiyfanIR 337 (1189)
T KOG2041|consen 329 SFIYFANIR 337 (1189)
T ss_pred ceEEEEeec
Confidence 444443333
No 264
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.11 E-value=2.4e-09 Score=112.44 Aligned_cols=212 Identities=20% Similarity=0.353 Sum_probs=160.1
Q ss_pred ccceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEEC-CCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 4 KRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASG 81 (818)
Q Consensus 4 ~r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl-~~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG 81 (818)
.+.+.++.++||.+.|+....-|.. .-+++.+.|.+++||-- +.++.-..+. .-..+++++.+..+...|++|-..|
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e-~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKE-EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCC-CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence 4556778899999999998888844 34889999999999953 3444433333 2356789999999999999999999
Q ss_pred eEEEEECC----CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEE-------------------------------
Q 003459 82 TIKLWDLE----EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK------------------------------- 126 (818)
Q Consensus 82 ~I~IWDl~----t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~------------------------------- 126 (818)
++.-+.+. .....+....|...+..+-|+.....+++.+.|..+.
T Consensus 91 tvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fv 170 (404)
T KOG1409|consen 91 TVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFV 170 (404)
T ss_pred eEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEe
Confidence 99988653 3344455556777777777766555555555543221
Q ss_pred --------EEE--CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEecCCCCEEEEEEeC
Q 003459 127 --------IWD--IRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK-LLHDFKCHEGQIQCIDFHP 195 (818)
Q Consensus 127 --------IwD--l~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~-~i~~~~~h~~~I~sv~fsp 195 (818)
+.. ...-..+.++.+|.+.+.+++|.+....|++|..|..+.+||+--++ ...+..+|...|..+...+
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~ 250 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ 250 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh
Confidence 111 11223566778999999999999999999999999999999997544 3456678889999998888
Q ss_pred CCCEEEEEeCCCeEEEEECCC
Q 003459 196 HEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 196 dg~~Lasgs~Dg~I~IwDl~t 216 (818)
.-..+++++.||.|.+||.+.
T Consensus 251 ~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 251 HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hheeeeeccCCCeEEEEeccc
Confidence 888999999999999999874
No 265
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.10 E-value=3.9e-07 Score=100.42 Aligned_cols=239 Identities=15% Similarity=0.094 Sum_probs=157.6
Q ss_pred EeeCCCcEEEEEe---------CCCeEEEEECCCCceEEEecCCC-------CCeEEEEEcCCCCEEEEEE-C-CCeEEE
Q 003459 24 IGRKSSRVLVTGG---------EDHKVNLWAIGKPNAILSLSGHT-------SGIDSVSFDSSEVLVAAGA-A-SGTIKL 85 (818)
Q Consensus 24 fsp~~~~lLatgs---------~Dg~V~lWdl~~~~~i~~l~~h~-------~~V~~l~fspdg~~Lasgs-~-DG~I~I 85 (818)
++|+++.++++.+ .+..|.+||..+.+.+..+..-. .....++++|||++|++.. . ++.|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8997776666667 68999999999999998887422 2234788999999998776 3 689999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-CeE-EEE---EecCCCCeE-EEEEcC-CCCEE
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGC-IHT---YKGHTRGVN-AIRFTP-DGRWV 158 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-~~~-i~~---l~~h~~~V~-~l~fsp-dg~~L 158 (818)
+|+.+++.+..+.-.. ...-...++.. ++ +-+.||......+.. ++. ... +.....++. .-.|.+ +|+++
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999999887422 22222222222 22 233455554443332 211 111 111000000 003455 88888
Q ss_pred EEEECCCeEEEEECCCC-----eEEEEEec-------CCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEECCC
Q 003459 159 VSGGEDNTVKLWDLTAG-----KLLHDFKC-------HEGQIQCIDFHPHEFLLATGS----------ADRTVKFWDLET 216 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~-----~~i~~~~~-------h~~~I~sv~fspdg~~Lasgs----------~Dg~I~IwDl~t 216 (818)
++..+ |.|.+.|+... +.+..+.. ..+.+.-++++|++..++... ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 87766 99999996432 23332221 234455699999988887742 124799999999
Q ss_pred CeEEEEeCCCCCCeeEEEEeCCCC-EEEEEE--CCCEEEEEecCCceeccc-ccc
Q 003459 217 FELIGSAGPETSGVRCLTFNPDGR-TLLCGL--HESLKVFSWEPIRCHDAV-DVG 267 (818)
Q Consensus 217 ~~~i~~~~~~~~~I~sl~fspdg~-~Lasgs--~d~I~Vwd~~~~~~~~~~-~~~ 267 (818)
++.+..+.. ...+..++|+|||+ +|++.. .+.+.|+|..+.+....+ .++
T Consensus 289 ~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~vg 342 (352)
T TIGR02658 289 GKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQLG 342 (352)
T ss_pred CeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeeccCC
Confidence 999998865 35789999999999 777554 346999999988877665 444
No 266
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2e-08 Score=111.05 Aligned_cols=277 Identities=14% Similarity=0.244 Sum_probs=177.3
Q ss_pred EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEEC
Q 003459 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-----------SGTIKLWDL 88 (818)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~-----------DG~I~IWDl 88 (818)
+-+.||| -|.||+|-...| |.+|--.+-..++.+. |. .|.-+.|+|+.+||++-+. ...++|||+
T Consensus 214 tyv~wSP-~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 214 TYVRWSP-KGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeEEecC-CceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 4688999 677899988877 9999766655666555 54 5899999999999998543 257999999
Q ss_pred CCCeEEEEEcCCCC--Ce-EEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-
Q 003459 89 EEAKIVRTLTGHRS--NC-ISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED- 164 (818)
Q Consensus 89 ~t~~~v~~l~~h~~--~V-~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D- 164 (818)
.+|...+.|..... .+ .-+.|+.|++|+|.-..+ .|.||+..+..++-.-.-.-..|....|+|.++.||.-...
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 99999888875322 22 346899999999988764 58999977644332222233557777777777666543211
Q ss_pred ----CeEEEEECCC----------------------CeE---------------------EEEEe---------cCCCCE
Q 003459 165 ----NTVKLWDLTA----------------------GKL---------------------LHDFK---------CHEGQI 188 (818)
Q Consensus 165 ----g~I~IwDl~t----------------------~~~---------------------i~~~~---------~h~~~I 188 (818)
..+.+..+.+ |.. +..+. .-...|
T Consensus 369 ~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~v 448 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESV 448 (698)
T ss_pred cCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhe
Confidence 1111111111 110 00000 012346
Q ss_pred EEEEEeCCCCEEEEEeC---CCeEEEEECCC----CeEEEEeCCCCCCeeEEEEeCCCCEEEEEE----CCCEEEEEecC
Q 003459 189 QCIDFHPHEFLLATGSA---DRTVKFWDLET----FELIGSAGPETSGVRCLTFNPDGRTLLCGL----HESLKVFSWEP 257 (818)
Q Consensus 189 ~sv~fspdg~~Lasgs~---Dg~I~IwDl~t----~~~i~~~~~~~~~I~sl~fspdg~~Lasgs----~d~I~Vwd~~~ 257 (818)
...+|-|.|..+++-+. ..++.+|.+++ .+++..+. ....+.+.|+|.|++++++. .+.+.+||.+-
T Consensus 449 i~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 449 IAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 77889999887776553 34789998873 22333333 24468899999999998764 33588888775
Q ss_pred Cceeccccccccceeeeee-cCCCEEEEEEc------CCeEEEEEecCCCcee
Q 003459 258 IRCHDAVDVGWSRLSDLNV-HEGKLLGCSYN------QSCVGVWVVDISRIEP 303 (818)
Q Consensus 258 ~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~------Dg~V~IWdvd~~~~~~ 303 (818)
..+..+-.......+.+.+ +.|+++.+++. |..-++|++.+..+..
T Consensus 527 a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~~ 579 (698)
T KOG2314|consen 527 ADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLKE 579 (698)
T ss_pred hhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHHH
Confidence 3443332222222333333 78999998875 4556788877766544
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=3.2e-07 Score=97.93 Aligned_cols=249 Identities=18% Similarity=0.283 Sum_probs=171.5
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeC---CCeEEEEECCC--CceEE--EecCCCCCeEEEEEcCCCCEEEEEEC-CC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGE---DHKVNLWAIGK--PNAIL--SLSGHTSGIDSVSFDSSEVLVAAGAA-SG 81 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~---Dg~V~lWdl~~--~~~i~--~l~~h~~~V~~l~fspdg~~Lasgs~-DG 81 (818)
..+.++.+.++-++|+| +++.|+++.. +|.|..|.++. |.... .......+-+.+++++++++|+++.. .|
T Consensus 33 ~~~v~~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 33 LQLVAELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred hhhccccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCc
Confidence 34556778889999999 5556666643 57888888764 33221 11122234488999999999998876 58
Q ss_pred eEEEEECCC-CeEEEE--EcCCCCC----------eEEEEEeCCCCEEEEEEC-CCcEEEEECCCCeEEEEEe---cCCC
Q 003459 82 TIKLWDLEE-AKIVRT--LTGHRSN----------CISVDFHPFGEFFASGSL-DTNLKIWDIRKKGCIHTYK---GHTR 144 (818)
Q Consensus 82 ~I~IWDl~t-~~~v~~--l~~h~~~----------V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~~~i~~l~---~h~~ 144 (818)
.|.++-+.. |.+... +..|.+. +....|.|++++|++.+. -..|.+|++..++....-. ....
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 899999865 432221 1224444 888999999999988764 2469999998775432211 2345
Q ss_pred CeEEEEEcCCCCEEEEEEC-CCeEEEEECCCC-eEEEEEec---------CCCCEEEEEEeCCCCEEEEEeC-CCeEEEE
Q 003459 145 GVNAIRFTPDGRWVVSGGE-DNTVKLWDLTAG-KLLHDFKC---------HEGQIQCIDFHPHEFLLATGSA-DRTVKFW 212 (818)
Q Consensus 145 ~V~~l~fspdg~~L~sgs~-Dg~I~IwDl~t~-~~i~~~~~---------h~~~I~sv~fspdg~~Lasgs~-Dg~I~Iw 212 (818)
.-+.|.|+|++++.+..++ +++|.+|..... ..+..++. .......|..+++|++|+++.. ...|.+|
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 6789999999999887765 789999998863 22222221 2345678899999999998763 3367788
Q ss_pred ECCC--CeE--EEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCc
Q 003459 213 DLET--FEL--IGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIR 259 (818)
Q Consensus 213 Dl~t--~~~--i~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~ 259 (818)
.+.. +++ +.....+....+.+.|+++|++|+++..+ .+.+|..+...
T Consensus 272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 272 SVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred EEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 7653 332 23334445557999999999999998766 49999887543
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.07 E-value=2e-07 Score=117.08 Aligned_cols=238 Identities=14% Similarity=0.208 Sum_probs=161.6
Q ss_pred EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC--C------------CCCeEEEEEcCCCCEEEEEEC-CCeEE
Q 003459 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG--H------------TSGIDSVSFDSSEVLVAAGAA-SGTIK 84 (818)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~--h------------~~~V~~l~fspdg~~Lasgs~-DG~I~ 84 (818)
..+++++.+++++++-..++.|.+||.. +..+..+.+ . -.....++++++++.|+++.. .+.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 4688888678888888888999999975 444444332 1 123578999998886666544 57799
Q ss_pred EEECCCCeEEEEEcCC-----------------CCCeEEEEEeCC-CCEEEEEECCCcEEEEECCCCeEEEEEecC----
Q 003459 85 LWDLEEAKIVRTLTGH-----------------RSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGH---- 142 (818)
Q Consensus 85 IWDl~t~~~v~~l~~h-----------------~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h---- 142 (818)
++|+.++.. .++.+. -..-..++|+|+ +..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 999887653 333210 112357999994 556666677889999998776542 22211
Q ss_pred -----------CCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEEec-------------C--------CCCEE
Q 003459 143 -----------TRGVNAIRFTPDGRWVVSG-GEDNTVKLWDLTAGKLLHDFKC-------------H--------EGQIQ 189 (818)
Q Consensus 143 -----------~~~V~~l~fspdg~~L~sg-s~Dg~I~IwDl~t~~~i~~~~~-------------h--------~~~I~ 189 (818)
-.....|+|+|+|++|+++ +.++.|++||+.++.......+ . -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 1234579999999855544 5568999999987653221100 0 01235
Q ss_pred EEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC-------------CCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003459 190 CIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-------------ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 190 sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~-------------~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
+++|+++|.++++-..++.|++||..++........ .-.....++++++|+++++...+ .|++|+.
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 889999999988888999999999988776543321 11246789999999877765544 5999998
Q ss_pred cCCce
Q 003459 256 EPIRC 260 (818)
Q Consensus 256 ~~~~~ 260 (818)
++.+.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 77543
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.06 E-value=1.1e-09 Score=133.58 Aligned_cols=192 Identities=17% Similarity=0.351 Sum_probs=155.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEE
Q 003459 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~ 137 (818)
-..|.++.-+|...+.++|+.||.|++|.+..++.+..+.. ....|+.+.|+.+|+.+..+..||.+.+|.+. .+...
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 34567777788888999999999999999999988877762 33789999999999999999999999999987 66777
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCC-CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003459 138 TYKGHTRGVNAIRFTPDGRWVVSGG---EDNTVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (818)
Q Consensus 138 ~l~~h~~~V~~l~fspdg~~L~sgs---~Dg~I~IwDl~t-~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwD 213 (818)
..+.|......+.|-. ..+++++ .++.+.+||..- +..-....+|.+.++++++.|...+|++|+.+|.|++||
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D 2364 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFD 2364 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEee
Confidence 8888999999999974 5566665 467899999653 222222278999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceecc
Q 003459 214 LETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA 263 (818)
Q Consensus 214 l~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~ 263 (818)
++..++++.++. ++ ...++++|+.+ .++||++........
T Consensus 2365 ~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~ 2405 (2439)
T KOG1064|consen 2365 IRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHT 2405 (2439)
T ss_pred hHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhc
Confidence 999888877764 44 45677777554 699999987644433
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.01 E-value=2.6e-08 Score=102.92 Aligned_cols=226 Identities=21% Similarity=0.228 Sum_probs=159.9
Q ss_pred CEEEEEEee--CCCc-EEEEEeCCCeEEEEECCCCceEEEecCCC------CCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 18 TVNCLKIGR--KSSR-VLVTGGEDHKVNLWAIGKPNAILSLSGHT------SGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 18 ~V~~lafsp--~~~~-lLatgs~Dg~V~lWdl~~~~~i~~l~~h~------~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
.+..+.|.. .++. .++-+..+|.|.+|..........+.+-. ....++.|++.+..++++..+|.+.+-+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~ 150 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE 150 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence 455666653 3344 56667778999999876555444444322 12457788999999999999999997776
Q ss_pred CCCeEE--EEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECC-CCeEEEE-EecCCCCeEEEEEcC-CCCEEEEEE
Q 003459 89 EEAKIV--RTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIR-KKGCIHT-YKGHTRGVNAIRFTP-DGRWVVSGG 162 (818)
Q Consensus 89 ~t~~~v--~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~-~~~~i~~-l~~h~~~V~~l~fsp-dg~~L~sgs 162 (818)
...... +.++.|..+++-..|+... +.+.+|+.|+.+..||++ .++.+.. .+.|...|.+|.-+| .+.++++|+
T Consensus 151 t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs 230 (339)
T KOG0280|consen 151 TEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS 230 (339)
T ss_pred ceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec
Confidence 555443 4788999999999998654 588999999999999999 4455555 567888999999887 688999999
Q ss_pred CCCeEEEEECC-CCeEEEEEecCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCe-----EEEEeCCCCCCeeEEE
Q 003459 163 EDNTVKLWDLT-AGKLLHDFKCHEGQIQCIDFHPH--EFLLATGSADRTVKFWDLETFE-----LIGSAGPETSGVRCLT 234 (818)
Q Consensus 163 ~Dg~I~IwDl~-t~~~i~~~~~h~~~I~sv~fspd--g~~Lasgs~Dg~I~IwDl~t~~-----~i~~~~~~~~~I~sl~ 234 (818)
.|..|++||.| -++++..-. -.+.|+.+.++|. +.+|+++-.+ -.+|.+...+. .......|.+-...-.
T Consensus 231 YDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~-G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~D 308 (339)
T KOG0280|consen 231 YDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHN-GAKILDSSDKVLEFQIVLPSDKIHDSLCYGGD 308 (339)
T ss_pred cccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhc-CceEEEecccccchheeeeccccccceeeccc
Confidence 99999999999 467776554 3588999999995 3344444333 36666665432 2233455555555556
Q ss_pred EeCCCCEEEEE
Q 003459 235 FNPDGRTLLCG 245 (818)
Q Consensus 235 fspdg~~Lasg 245 (818)
|.....+|+++
T Consensus 309 Wd~~~~~lATC 319 (339)
T KOG0280|consen 309 WDSKDSFLATC 319 (339)
T ss_pred cccccceeeee
Confidence 64444567764
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.99 E-value=6.1e-07 Score=110.96 Aligned_cols=281 Identities=15% Similarity=0.253 Sum_probs=183.8
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEE----ECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLW----AIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE-- 89 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lW----dl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~-- 89 (818)
.+.|.++.|-+ +...++.+..+|.|.++ +..... +...-.-...|.+++|+||+.+|+..+.+|+|.+-+-.
T Consensus 75 ~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 75 NDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 46799999998 45568888889999999 443322 22222345789999999999999999999988876421
Q ss_pred -------------CCeEE--------EEEcC------------------------CCCCeEEEEEeCCCCEEEEEEC---
Q 003459 90 -------------EAKIV--------RTLTG------------------------HRSNCISVDFHPFGEFFASGSL--- 121 (818)
Q Consensus 90 -------------t~~~v--------~~l~~------------------------h~~~V~sv~fspdg~~Lasgs~--- 121 (818)
..+.+ ..|.| ++..-..|+|-.||.|||+.+.
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~ 232 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPE 232 (928)
T ss_pred EEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcC
Confidence 00010 01110 2334567899999999999875
Q ss_pred C---CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEEEec----CCCCEEEE
Q 003459 122 D---TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE---DNTVKLWDLTAGKLLHDFKC----HEGQIQCI 191 (818)
Q Consensus 122 D---g~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~---Dg~I~IwDl~t~~~i~~~~~----h~~~I~sv 191 (818)
. ..|++|+- .|....+...-.+--.+++|.|.|++|++.-. ...|.+|. ++|-.-.+|.. ....|..+
T Consensus 233 ~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 233 TGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEE
Confidence 2 47999995 46655555444444567899999999998764 34577777 44555555543 35679999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCeE--EEEeC-CCCCCeeEEEEeCCC-CEEEEEEC-CCEEEEEec--CCce----
Q 003459 192 DFHPHEFLLATGSADRTVKFWDLETFEL--IGSAG-PETSGVRCLTFNPDG-RTLLCGLH-ESLKVFSWE--PIRC---- 260 (818)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~IwDl~t~~~--i~~~~-~~~~~I~sl~fspdg-~~Lasgs~-d~I~Vwd~~--~~~~---- 260 (818)
.|++++..||....|. |.+|-..+..- ...+. .....+..+.|+|.. ..|.+.+. +.+..++|. ....
T Consensus 311 ~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999988665 99999887552 22222 223345569999953 34555554 555554442 2111
Q ss_pred ------ecc------------------------ccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCce
Q 003459 261 ------HDA------------------------VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 261 ------~~~------------------------~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
..+ +.... .+.++.+ +++..+++-..||.|.+|..+.....
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~-~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPS-PVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMW 461 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCC-CcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcc
Confidence 001 11222 2333333 55666899999999999998776644
No 272
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=2.2e-10 Score=131.10 Aligned_cols=222 Identities=20% Similarity=0.337 Sum_probs=170.2
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC--eEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG--TIK 84 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG--~I~ 84 (818)
..+..|..|+..-+|++|+- +.+.|+.|+..|.|++|++.+|.......+|..+|+.+.=+.+|..+++.+... -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 34567889999999999998 778899999999999999999999999999999999999999998776655433 467
Q ss_pred EEECCC-CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec----CCCCeEEEEEcCCCCEEE
Q 003459 85 LWDLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG----HTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 85 IWDl~t-~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~----h~~~V~~l~fspdg~~L~ 159 (818)
+|++.+ +...++|. ...++.|+....+-+.|+......+||++++..+.++-. ....-++..|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 999864 44555554 345788887655556666667789999999887766421 222336788999887665
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003459 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg 239 (818)
.|| .+||.+..+.++.|...... ..-.|||+|.-++.-++ |||+++++.++...... -..+.|+..|
T Consensus 1247 ---ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld--qc~VtFNstG 1313 (1516)
T KOG1832|consen 1247 ---NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD--QCAVTFNSTG 1313 (1516)
T ss_pred ---eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHhcCcccc--ceEEEeccCc
Confidence 355 68999998888888754422 33469999999988764 99999999887764432 2568899888
Q ss_pred CEEEEEE
Q 003459 240 RTLLCGL 246 (818)
Q Consensus 240 ~~Lasgs 246 (818)
..++...
T Consensus 1314 ~VmYa~~ 1320 (1516)
T KOG1832|consen 1314 DVMYAML 1320 (1516)
T ss_pred cchhhhh
Confidence 8877553
No 273
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.98 E-value=1.1e-06 Score=92.76 Aligned_cols=218 Identities=15% Similarity=0.144 Sum_probs=151.3
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEc-CCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003459 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD-SSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 21 ~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fs-pdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (818)
+++|.+.++.++++--..+.|+.|+..++.... +.... ...+++. +++. |+.+...+ +.++|+.+++....+..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEEeec
Confidence 678988778888888889999999987765543 22222 7778887 5654 45555544 66669999865544432
Q ss_pred -----CCCCeEEEEEeCCCCEEEEEECC--------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE-EECCC
Q 003459 100 -----HRSNCISVDFHPFGEFFASGSLD--------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS-GGEDN 165 (818)
Q Consensus 100 -----h~~~V~sv~fspdg~~Lasgs~D--------g~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~s-gs~Dg 165 (818)
.......+++.++|++.++.... |.|+.++.. ++...... .-...+.|+|+|+++.|+. -+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 33567899999999977766543 568888877 55443333 3455789999999998764 45678
Q ss_pred eEEEEECCCC-e------EEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe-C
Q 003459 166 TVKLWDLTAG-K------LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN-P 237 (818)
Q Consensus 166 ~I~IwDl~t~-~------~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fs-p 237 (818)
.|..|++... . ....+....+..-.+++..+|++.++....+.|.++|.+ |+.+..+......+++++|. +
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 8999998632 1 122222222347889999999998888889999999988 88888877665689999994 6
Q ss_pred CCCEEEEEE
Q 003459 238 DGRTLLCGL 246 (818)
Q Consensus 238 dg~~Lasgs 246 (818)
+.+.|++.+
T Consensus 236 ~~~~L~vTt 244 (246)
T PF08450_consen 236 DGKTLYVTT 244 (246)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 767776543
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=6.4e-07 Score=102.10 Aligned_cols=199 Identities=10% Similarity=0.013 Sum_probs=130.8
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCE-EEEEEC---CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCE
Q 003459 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVL-VAAGAA---SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEF 115 (818)
Q Consensus 40 ~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~-Lasgs~---DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~ 115 (818)
.|.+-|..... .+.+.... .+....|+|+|+. ++..+. +..|+++|+.+++...... ..+......|+|||+.
T Consensus 170 ~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCE
Confidence 45555553333 33333233 7788999999984 654443 3569999998887655444 4555667889999987
Q ss_pred EEEEEC---CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCEE
Q 003459 116 FASGSL---DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQ 189 (818)
Q Consensus 116 Lasgs~---Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~ 189 (818)
++.... +..|+++|+.++.. ..+..+........|+|||+.|+..+.. | .|+++|+.+++....... +. .
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~--g~-~ 322 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH--GK-N 322 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC--CC-c
Confidence 665432 35788889887763 3444344334456899999988877643 2 688899988765433221 11 1
Q ss_pred EEEEeCCCCEEEEEeCC---------CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003459 190 CIDFHPHEFLLATGSAD---------RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 190 sv~fspdg~~Lasgs~D---------g~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (818)
...|+|+|++|+..... ..|.+.|+.++....... . .......|+|||+.|+....
T Consensus 323 ~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 323 NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-N-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-C-CCcCCeEECCCCCEEEEEEc
Confidence 24899999988877643 368888998876533222 2 22345889999998886543
No 275
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.97 E-value=1.1e-07 Score=104.76 Aligned_cols=278 Identities=11% Similarity=0.107 Sum_probs=190.8
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC-------------
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG------------- 81 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG------------- 81 (818)
-.-++..++||| .|.+|+.....| |.+|.-.....+..+. | ..|..+.|+|.++||.+-+..+
T Consensus 31 ~~~p~~~~~~SP-~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~ 106 (561)
T COG5354 31 ENWPVAYVSESP-LGTYLFSEHAAG-VECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTS 106 (561)
T ss_pred cCcchhheeecC-cchheehhhccc-eEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCccc
Confidence 445788899999 677788777655 9999987666665555 3 4689999999999999865543
Q ss_pred --eEEEEECCCCeEEEEEcCCCCC--eE-EEEEeCCCCEEEEEECCCcEEEEECCCCeE----EEEEecCCCCeEEEEEc
Q 003459 82 --TIKLWDLEEAKIVRTLTGHRSN--CI-SVDFHPFGEFFASGSLDTNLKIWDIRKKGC----IHTYKGHTRGVNAIRFT 152 (818)
Q Consensus 82 --~I~IWDl~t~~~v~~l~~h~~~--V~-sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~----i~~l~~h~~~V~~l~fs 152 (818)
.+.+||+.+|.++..+.+...+ .+ -+.|+-+..|+|-. ....++|+++ ++.. ...++ ...|....|+
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsis 182 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIEEHPFKNLR--PVGILDFSIS 182 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccccCchhhcc--ccceeeEEec
Confidence 4999999999999999876655 55 68899888877665 3456999997 3321 12222 3568888999
Q ss_pred CCC--CEEEE-----EECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe-----------CCCeEEEEEC
Q 003459 153 PDG--RWVVS-----GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-----------ADRTVKFWDL 214 (818)
Q Consensus 153 pdg--~~L~s-----gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs-----------~Dg~I~IwDl 214 (818)
|.| ..|+. .+..+.+++|.+..+..+.+.......-..+.|++.|.+|++-- .+..++|+++
T Consensus 183 P~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~ 262 (561)
T COG5354 183 PEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRI 262 (561)
T ss_pred CCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEee
Confidence 853 33443 34678999999987777665443344446789999988776532 2346888988
Q ss_pred CCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE--CC-CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEc---C
Q 003459 215 ETFELIGSAGPETSGVRCLTFNPDGRTLLCGL--HE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYN---Q 288 (818)
Q Consensus 215 ~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs--~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~---D 288 (818)
+...+.... ...++|...+|.|+++.+++.+ .. .+.+|++...-.+.. .....-+.++.+.+++++.++- .
T Consensus 263 ~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~ 339 (561)
T COG5354 263 TERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF--PEQKRNTIFFSPHERYILFAGFDNLQ 339 (561)
T ss_pred cccccceec-cccccceeeeecccCCceeEEecccccceeecccccceEEec--CCcccccccccCcccEEEEecCCccc
Confidence 854443332 4578999999999988777554 22 578888776522211 1122233455566777665444 3
Q ss_pred CeEEEEEecCCCcee
Q 003459 289 SCVGVWVVDISRIEP 303 (818)
Q Consensus 289 g~V~IWdvd~~~~~~ 303 (818)
|.|-+|+........
T Consensus 340 gni~i~~~~~rf~~~ 354 (561)
T COG5354 340 GNIEIFDPAGRFKVA 354 (561)
T ss_pred cceEEeccCCceEEE
Confidence 789999877665443
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=2e-09 Score=118.05 Aligned_cols=239 Identities=19% Similarity=0.228 Sum_probs=166.1
Q ss_pred EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCc
Q 003459 52 ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTN 124 (818)
Q Consensus 52 i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t-------~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~ 124 (818)
+..+.||+..|..++--.+.+-+++++.|.+|++|.++. ..+..+++.|+.+|.++.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456779999999988777888899999999999999853 34677888999999999999888888766 788
Q ss_pred EEEEECCCCeEEEEEe--cCCCCeEEEEEcC--CCCEEEEE-ECCCeEEEEECCCCeEEEEEec-----CCCCEEEEEEe
Q 003459 125 LKIWDIRKKGCIHTYK--GHTRGVNAIRFTP--DGRWVVSG-GEDNTVKLWDLTAGKLLHDFKC-----HEGQIQCIDFH 194 (818)
Q Consensus 125 I~IwDl~~~~~i~~l~--~h~~~V~~l~fsp--dg~~L~sg-s~Dg~I~IwDl~t~~~i~~~~~-----h~~~I~sv~fs 194 (818)
|++||.--++.+..+. ...+.+..+..-+ +...+++| +...+|+++|.+......+++. ..+.+.+++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999987777665332 1122333343333 34444444 6778999999999887777653 33568899999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEE-EEECCCEEE-EEecCCceecccccccccee
Q 003459 195 PHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLL-CGLHESLKV-FSWEPIRCHDAVDVGWSRLS 272 (818)
Q Consensus 195 pdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~La-sgs~d~I~V-wd~~~~~~~~~~~~~~~~v~ 272 (818)
+.|++++.+-.+|.|.+.|.++|+.+..+++-......++ .|..+.|+ ++.+.++.| |..-.+..+-..+..-.+.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa- 963 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA- 963 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch-
Confidence 9999999999999999999999999998887766665555 34445555 344445655 5444333322221111110
Q ss_pred eeeecCCCEEEEEEcCCeEEEE
Q 003459 273 DLNVHEGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 273 ~l~~~~g~lLatg~~Dg~V~IW 294 (818)
.+.-.-|..|++..+...+++|
T Consensus 964 hflqsvgpSLV~a~~Gn~lgVY 985 (1034)
T KOG4190|consen 964 HFLQSVGPSLVTAQNGNILGVY 985 (1034)
T ss_pred hhhhccCceeEEeccCcEEEEE
Confidence 0001224566666666666666
No 277
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=3.5e-08 Score=112.54 Aligned_cols=287 Identities=18% Similarity=0.206 Sum_probs=206.0
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC------------CCEEEEEECCCeE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS------------EVLVAAGAASGTI 83 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspd------------g~~Lasgs~DG~I 83 (818)
...-.++.|+| +| ++|.|+. ..|.+.|..+-+.+..+.-|...|+.+.|.|. .-+||++...|.|
T Consensus 15 ~sN~~A~Dw~~-~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI 91 (1062)
T KOG1912|consen 15 RSNRNAADWSP-SG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI 91 (1062)
T ss_pred cccccccccCc-cc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence 34466889998 44 5666665 56899999999999999999999999999762 1267888889999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEeCC---C-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEE
Q 003459 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPF---G-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWV 158 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~V~sv~fspd---g-~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp-dg~~L 158 (818)
.+||...+..+..+..|..++..++|-+. . ..|++-....+|.+|+..+|+.+..+........|+.+.| |.+.+
T Consensus 92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceE
Confidence 99999999999999999999999999763 3 3567777778999999999999998887667778899999 77778
Q ss_pred EEEECCCeEEEEECCC-------CeEEEEEecCCC----------------C---------EEEEEEeCCCCEEEEEeCC
Q 003459 159 VSGGEDNTVKLWDLTA-------GKLLHDFKCHEG----------------Q---------IQCIDFHPHEFLLATGSAD 206 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t-------~~~i~~~~~h~~----------------~---------I~sv~fspdg~~Lasgs~D 206 (818)
..-+..|.+.+.+.-. |+..+.-..|.. . ...++|+|.-+-++.....
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 8878888888776532 233222222221 0 1235678875555555567
Q ss_pred CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC--CEEEEEECC-CEEEEEecCCce----------------eccc--c
Q 003459 207 RTVKFWDLETFELIGSAGPETSGVRCLTFNPDG--RTLLCGLHE-SLKVFSWEPIRC----------------HDAV--D 265 (818)
Q Consensus 207 g~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg--~~Lasgs~d-~I~Vwd~~~~~~----------------~~~~--~ 265 (818)
..+.++|++-..++....-..+.+.-+.|-|++ ..|++...+ .+.+|--..... ..++ -
T Consensus 252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m 331 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPM 331 (1062)
T ss_pred cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeec
Confidence 889999999988888887778888888888875 467777555 477775432110 0000 1
Q ss_pred ccccceeeeeecC-CCEEEEEEcCCeEEEEEecCCCceeee
Q 003459 266 VGWSRLSDLNVHE-GKLLGCSYNQSCVGVWVVDISRIEPYT 305 (818)
Q Consensus 266 ~~~~~v~~l~~~~-g~lLatg~~Dg~V~IWdvd~~~~~~~~ 305 (818)
..+.++....++. ...++.-..+|.+.+|.+..+++.+.+
T Consensus 332 ~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~ 372 (1062)
T KOG1912|consen 332 EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDY 372 (1062)
T ss_pred hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccc
Confidence 1122233333333 455666678899999999987766533
No 278
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.94 E-value=5.5e-07 Score=98.14 Aligned_cols=260 Identities=17% Similarity=0.193 Sum_probs=176.4
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-CCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-KPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~-~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~ 95 (818)
+.|+|-.+- ++++.+....+|.=++|.++ +|+-+......+. -.+-..+.||+.|+.. .-|.|++||.++.+...
T Consensus 226 ~~vS~PmIV--~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtd-YY~R~~nsDGkrIvFq-~~GdIylydP~td~lek 301 (668)
T COG4946 226 GNVSSPMIV--GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTD-YYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEK 301 (668)
T ss_pred CCcCCceEE--cceEEEEecccCccceEEeccCCchhhhcCCchh-ccccccCCCCcEEEEe-cCCcEEEeCCCcCccee
Confidence 334443333 45556666667666666542 3333332221111 1223345688888764 57889999988765433
Q ss_pred EEcC------CCCC--eE---EEE-EeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003459 96 TLTG------HRSN--CI---SVD-FHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 96 ~l~~------h~~~--V~---sv~-fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs 162 (818)
.--+ ...+ +. -+. |++ +|++++..+. |...|.+...+-.++. +|...|.-..+..+++-++.|.
T Consensus 302 ldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt 378 (668)
T COG4946 302 LDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGT 378 (668)
T ss_pred eecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEec
Confidence 2111 0000 11 111 222 5788888874 7788887766554443 4677799889988888999999
Q ss_pred CCC-eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCE
Q 003459 163 EDN-TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241 (818)
Q Consensus 163 ~Dg-~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~ 241 (818)
.|| .+-|||.++++ +..+...-+.|.++..+++|++++.+.....|.++|+.+++....-+...+-|+.+.|+|++++
T Consensus 379 ~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~ 457 (668)
T COG4946 379 NDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRW 457 (668)
T ss_pred cCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCcee
Confidence 999 89999998775 4445556789999999999999999999999999999999877666677788999999999999
Q ss_pred EEEEECC-----CEEEEEecCCceeccccccccceeeeeecCCCEEEE
Q 003459 242 LLCGLHE-----SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGC 284 (818)
Q Consensus 242 Lasgs~d-----~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLat 284 (818)
+|-+.-+ .|++||.+.++..++........+..+-+++++|.-
T Consensus 458 iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYf 505 (668)
T COG4946 458 IAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYF 505 (668)
T ss_pred EEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEE
Confidence 9987654 499999998887765433333333344467777653
No 279
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.92 E-value=3.6e-07 Score=95.35 Aligned_cols=216 Identities=15% Similarity=0.093 Sum_probs=143.8
Q ss_pred CCeEEEEECCCCeEEEEEcCCC--CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003459 80 SGTIKLWDLEEAKIVRTLTGHR--SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~--~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~ 157 (818)
+|+|..||..+|+.+....--. ....+. ..+++.++++++.++.|+.||..+|+.+..+.. ...+...- ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccc
Confidence 7899999999999998886311 122211 333577888889999999999999999988875 22222111 224566
Q ss_pred EEEEECCCeEEEEECCCCeEEEEE-ecCC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCC----
Q 003459 158 VVSGGEDNTVKLWDLTAGKLLHDF-KCHE---GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG---- 229 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~-~~h~---~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~---- 229 (818)
+++++.++.|+.+|..+|+.+..+ .... ...........+..++++..++.|..+|.++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 777778999999999999999984 4221 11223333334778888888999999999999998877553322
Q ss_pred ------eeEEEEeCCCCEEEEEECCC--EEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCc
Q 003459 230 ------VRCLTFNPDGRTLLCGLHES--LKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 230 ------I~sl~fspdg~~Lasgs~d~--I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~ 301 (818)
+..-.+..++ .++.+..++ +.+ |..+++... ..............+..|+++..++.|.+||+.+++.
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w--~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLW--SKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEE--EECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEE--EecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 1222233345 555555444 444 888877442 2222333333456777777777999999999999986
Q ss_pred e
Q 003459 302 E 302 (818)
Q Consensus 302 ~ 302 (818)
.
T Consensus 235 ~ 235 (238)
T PF13360_consen 235 V 235 (238)
T ss_dssp E
T ss_pred E
Confidence 4
No 280
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.92 E-value=1.3e-08 Score=115.25 Aligned_cols=282 Identities=18% Similarity=0.254 Sum_probs=182.0
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-ceEEEecCCC--CCeEEEEEcCC--CCEEEEEECCCeEEEEECCC
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-NAILSLSGHT--SGIDSVSFDSS--EVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~-~~i~~l~~h~--~~V~~l~fspd--g~~Lasgs~DG~I~IWDl~t 90 (818)
.+.+.++.++| .++-+|.++.-| +.+.|+..+ ....-+. |. -.|-.+.|++. ..+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p-~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ 100 (1081)
T KOG0309|consen 24 DGGFNAVSINP-SGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAK 100 (1081)
T ss_pred cCcccceeecc-ccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhc
Confidence 35678889999 566677887766 666777543 2222222 32 34677888764 34555656667778999853
Q ss_pred ---CeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 91 ---AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (818)
Q Consensus 91 ---~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~-~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg 165 (818)
..+-..+.+|...|+.+.|+|+.. .+++++.|..+..||+++.. ++..+..-......++|+.....+.+.+...
T Consensus 101 ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred CCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 345566778999999999999765 78999999999999998754 4444444445567889987544555666788
Q ss_pred eEEEEECCCC-eEEEEEecCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeEEE-EeCCCCCCeeEEEEeCCCC--
Q 003459 166 TVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIG-SAGPETSGVRCLTFNPDGR-- 240 (818)
Q Consensus 166 ~I~IwDl~t~-~~i~~~~~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~i~-~~~~~~~~I~sl~fspdg~-- 240 (818)
.|.+||++.| .++..+++|...|+.+.|... ...+.+.+.||+|++||..+..... .......+|+--.+.|-|.
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee
Confidence 8999999975 577888889999999998764 4567888899999999987543222 1223345566666666443
Q ss_pred EEEEE-ECCCEEEEEecCCc----------eeccccccccceeeeee-----------cCCCEEEEEEcCCeEEEEEecC
Q 003459 241 TLLCG-LHESLKVFSWEPIR----------CHDAVDVGWSRLSDLNV-----------HEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 241 ~Lasg-s~d~I~Vwd~~~~~----------~~~~~~~~~~~v~~l~~-----------~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
++.-. +++.+.+++-+... ....+..+...+-.+.+ .....|++-+.|..+++|.++.
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 22211 12223333322211 11111112111111111 1134688999999999999876
Q ss_pred CC
Q 003459 299 SR 300 (818)
Q Consensus 299 ~~ 300 (818)
.-
T Consensus 341 ~i 342 (1081)
T KOG0309|consen 341 QI 342 (1081)
T ss_pred HH
Confidence 54
No 281
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=6.3e-07 Score=102.13 Aligned_cols=194 Identities=9% Similarity=-0.018 Sum_probs=128.5
Q ss_pred CEEEEEEeeCCCcEEEE-EeC--CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCC
Q 003459 18 TVNCLKIGRKSSRVLVT-GGE--DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEA 91 (818)
Q Consensus 18 ~V~~lafsp~~~~lLat-gs~--Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~t~ 91 (818)
.+....|+|++.++++. ... +..|+++|+.+++...... ..+......|+|||+.|+.... +..|+++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 66789999976653443 332 3568999998776654443 4555677889999987765432 357888898877
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEECC-C--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC----
Q 003459 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---- 164 (818)
Q Consensus 92 ~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D-g--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D---- 164 (818)
+... +..+........|+|||+.|+..+.. + .|+++|+.+++....... .. ....|+|||++|+.....
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcc
Confidence 6443 44344333456899999987777643 2 788889987765433221 11 124899999998877654
Q ss_pred -----CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCe
Q 003459 165 -----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETFE 218 (818)
Q Consensus 165 -----g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg---~I~IwDl~t~~ 218 (818)
..|.+.|+.++... .+... .......|+|||..|+....++ .+.++++....
T Consensus 344 ~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred cCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 36888898887643 33322 2334588999999887766432 46677776543
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.90 E-value=1.4e-06 Score=109.78 Aligned_cols=236 Identities=14% Similarity=0.155 Sum_probs=155.0
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEcC-C-------------CCCeEEEEEeCCCCEEEEEEC-CCcEE
Q 003459 63 DSVSFDSS-EVLVAAGAASGTIKLWDLEEAKIVRTLTG-H-------------RSNCISVDFHPFGEFFASGSL-DTNLK 126 (818)
Q Consensus 63 ~~l~fspd-g~~Lasgs~DG~I~IWDl~t~~~v~~l~~-h-------------~~~V~sv~fspdg~~Lasgs~-Dg~I~ 126 (818)
..+++++. +.++++-..++.|.+||.. +..+..+.+ . -.....+++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 36788764 5566676778899999976 444444432 1 123478999998887666654 56799
Q ss_pred EEECCCCeEEEEEecC-----------------CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecC----
Q 003459 127 IWDIRKKGCIHTYKGH-----------------TRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH---- 184 (818)
Q Consensus 127 IwDl~~~~~i~~l~~h-----------------~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h---- 184 (818)
.+|+.++. +.++.+- -..-..++|+| ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~ 727 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER 727 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence 99987754 4333210 11235799999 5666666677889999999877543 22111
Q ss_pred -----------CCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCeEEEEe-------------CCC--------CCCee
Q 003459 185 -----------EGQIQCIDFHPHEF-LLATGSADRTVKFWDLETFELIGSA-------------GPE--------TSGVR 231 (818)
Q Consensus 185 -----------~~~I~sv~fspdg~-~Lasgs~Dg~I~IwDl~t~~~i~~~-------------~~~--------~~~I~ 231 (818)
-.....|+|+|++. ++++-+.++.|++||+.++...... ... -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 12346799999987 4555566789999999876532111 000 11246
Q ss_pred EEEEeCCCCEEEEEECC-CEEEEEecCCceeccccc-------------cccceeeee-ecCCCEEEEEEcCCeEEEEEe
Q 003459 232 CLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV-------------GWSRLSDLN-VHEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 232 sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~-------------~~~~v~~l~-~~~g~lLatg~~Dg~V~IWdv 296 (818)
+++|+++|..+++...+ .|++||.+++........ .+.....+. ..+|+++++-..+++|++|++
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 89999999876665544 699999987665432211 111223333 468899999999999999999
Q ss_pred cCCCc
Q 003459 297 DISRI 301 (818)
Q Consensus 297 d~~~~ 301 (818)
++++.
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 98875
No 283
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.89 E-value=4.4e-07 Score=102.84 Aligned_cols=256 Identities=14% Similarity=0.018 Sum_probs=160.6
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCCeEE-EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEE-EE
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDS-VSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCIS-VD 108 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~-l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~s-v~ 108 (818)
.++.++.+|.++.+|..+++.+....... .+.+ ... .+..++.++.+|.|..+|..+|+.+..+......... ..
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 46667788999999999999888776432 2221 111 2446667888999999999999998887632111100 00
Q ss_pred EeC--CCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-------CeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeE
Q 003459 109 FHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR-------GVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAGKL 177 (818)
Q Consensus 109 fsp--dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~-------~V~~l~fsp--dg~~L~sgs~Dg~I~IwDl~t~~~ 177 (818)
-+| .+..++.++.+|.+..+|..+++.+........ ....+..+| .+..++.++.+|.+..+|..+|+.
T Consensus 199 ~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 199 SAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred CCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE
Confidence 011 134577788899999999999987766532110 011111223 355777888899999999999998
Q ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC-CeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003459 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS-GVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 178 i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~-~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
+..... +....+. ..+..|+.++.+|.+..+|..+++.+........ ...+..+. +| +|+++..+ .+.++|.
T Consensus 279 ~W~~~~--~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g-~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 279 VWKREY--GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NG-YLVVGDSEGYLHWINR 352 (394)
T ss_pred EEeecC--CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE-CC-EEEEEeCCCEEEEEEC
Confidence 876542 1111222 2456777888899999999999988765432211 12222222 44 45555444 5778888
Q ss_pred cCCceecccccccccee-eeeecCCCEEEEEEcCCeEEEEEe
Q 003459 256 EPIRCHDAVDVGWSRLS-DLNVHEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 256 ~~~~~~~~~~~~~~~v~-~l~~~~g~lLatg~~Dg~V~IWdv 296 (818)
.+++.....+.....+. .-... +..|.+++.||.|+.+..
T Consensus 353 ~tG~~~~~~~~~~~~~~s~P~~~-~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 353 EDGRFVAQQKVDSSGFLSEPVVA-DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCCCEEEEEEcCCCcceeCCEEE-CCEEEEEeCCceEEEEeC
Confidence 88877655544322222 11223 457778899999888754
No 284
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.89 E-value=2.9e-06 Score=105.00 Aligned_cols=240 Identities=18% Similarity=0.255 Sum_probs=162.8
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCC---eEEEEECCCCc---eEEEec-----CCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDH---KVNLWAIGKPN---AILSLS-----GHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg---~V~lWdl~~~~---~i~~l~-----~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
..+...+|.+....++++.+... .|.+....... .+..+. ...+.|.++.|-++...++.+..+|.|.+
T Consensus 22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 36778888875555544444332 24444433222 333333 23468999999999999999999999999
Q ss_pred E----ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE-----------------------
Q 003459 86 W----DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT----------------------- 138 (818)
Q Consensus 86 W----Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~----------------------- 138 (818)
+ +..+... ...-.-...|.+++|+||+..|+..+.+++|.+.+- +..++..
T Consensus 102 ~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeT 179 (928)
T PF04762_consen 102 VREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKET 179 (928)
T ss_pred EEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccC
Confidence 9 5544332 222224578999999999999999999998887742 1111111
Q ss_pred -Eec------------------------CCCCeEEEEEcCCCCEEEEEEC---C---CeEEEEECCCCeEEEEEecCCCC
Q 003459 139 -YKG------------------------HTRGVNAIRFTPDGRWVVSGGE---D---NTVKLWDLTAGKLLHDFKCHEGQ 187 (818)
Q Consensus 139 -l~~------------------------h~~~V~~l~fspdg~~L~sgs~---D---g~I~IwDl~t~~~i~~~~~h~~~ 187 (818)
|.| +...-..|+|-.||.++|+.+- . ..|+||+-. |.....-..-.+-
T Consensus 180 QF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gL 258 (928)
T PF04762_consen 180 QFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGL 258 (928)
T ss_pred ccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCc
Confidence 100 1223457889999999998875 3 369999954 7765555544444
Q ss_pred EEEEEEeCCCCEEEEEeC---CCeEEEEECCC---CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCc
Q 003459 188 IQCIDFHPHEFLLATGSA---DRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIR 259 (818)
Q Consensus 188 I~sv~fspdg~~Lasgs~---Dg~I~IwDl~t---~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~ 259 (818)
-.+++|-|.|.+||+... ...|.+|.-+. |+....+......|..+.|++|+..|++-..+.|.+|-.....
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYH 336 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYH 336 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCE
Confidence 568899999999998864 35688887443 2222223345678999999999999999888889999776554
No 285
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.88 E-value=2.7e-07 Score=94.41 Aligned_cols=227 Identities=11% Similarity=0.007 Sum_probs=153.5
Q ss_pred cEEEEEeCCCeEEEEECCCCceE-EEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEE
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAI-LSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISV 107 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i-~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv 107 (818)
.+||.||..|...+|...+.+.. +....|...|+-+.=.-+ ..-+..++.|.++++.+++-+.....+....-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 36899999999999999755443 333445444433221111 2235566788888888876554333222122337899
Q ss_pred EEeCCCCEEEEEECCCcEEEEECCCCe-E-EE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE---
Q 003459 108 DFHPFGEFFASGSLDTNLKIWDIRKKG-C-IH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF--- 181 (818)
Q Consensus 108 ~fspdg~~Lasgs~Dg~I~IwDl~~~~-~-i~-~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~--- 181 (818)
.++++++++++.+....|..|.+.... . +. ........-.+..|+.....+|++..||++.|||++........
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 999999999999999999999887532 2 22 22233445578899998999999999999999999975432222
Q ss_pred --ecCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCeEEEEeCCC--------CCCeeEEEEeCCCCEEEEEECCC
Q 003459 182 --KCHEGQIQCIDFHPHEF--LLATGSADRTVKFWDLETFELIGSAGPE--------TSGVRCLTFNPDGRTLLCGLHES 249 (818)
Q Consensus 182 --~~h~~~I~sv~fspdg~--~Lasgs~Dg~I~IwDl~t~~~i~~~~~~--------~~~I~sl~fspdg~~Lasgs~d~ 249 (818)
..|.+.+..+.|++.|. +|+..-.-+.+++.|++++.-...+... ...|..-.|+.++.-+.+..+..
T Consensus 245 trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~ 324 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ 324 (344)
T ss_pred cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh
Confidence 24789999999998653 5555555678999999998765544222 23377777888877777766654
Q ss_pred EEEEEec
Q 003459 250 LKVFSWE 256 (818)
Q Consensus 250 I~Vwd~~ 256 (818)
+.=|...
T Consensus 325 ~ae~ni~ 331 (344)
T KOG4532|consen 325 GAEYNIL 331 (344)
T ss_pred hheeecc
Confidence 4444443
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.88 E-value=6.9e-07 Score=98.52 Aligned_cols=278 Identities=14% Similarity=0.171 Sum_probs=186.1
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCC---------------eEEEEECCCCceEEEecCCCCC--eE-EEEEcCCCCEEEEEE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDH---------------KVNLWAIGKPNAILSLSGHTSG--ID-SVSFDSSEVLVAAGA 78 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg---------------~V~lWdl~~~~~i~~l~~h~~~--V~-~l~fspdg~~Lasgs 78 (818)
..|.-+.|+| .+.+|++-...+ .+.+||+.++..+..+.+...+ .+ -+.|+-+.+|+|--
T Consensus 72 ~~V~~~~fSP-~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv- 149 (561)
T COG5354 72 PDVKYLDFSP-NEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV- 149 (561)
T ss_pred CCceecccCc-ccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-
Confidence 3588899999 778899886544 4999999999999998876665 55 68888888877655
Q ss_pred CCCeEEEEECCCCeEE-EEEcCC-CCCeEEEEEeCCCC--EEEE-----EECCCcEEEEECCCCeEEEEEecCCCCeEEE
Q 003459 79 ASGTIKLWDLEEAKIV-RTLTGH-RSNCISVDFHPFGE--FFAS-----GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149 (818)
Q Consensus 79 ~DG~I~IWDl~t~~~v-~~l~~h-~~~V~sv~fspdg~--~Las-----gs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l 149 (818)
....++|+++ ++... ..+..- ...|....|+|.++ .|+. ++..+.+++|.+..+..+.+..-....-..+
T Consensus 150 v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 150 VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred ccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 3457999997 33221 111111 25678888998754 3443 3567899999998777665543333334568
Q ss_pred EEcCCCCEEEEEE-----------CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEE--EeCCCeEEEEECCC
Q 003459 150 RFTPDGRWVVSGG-----------EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLAT--GSADRTVKFWDLET 216 (818)
Q Consensus 150 ~fspdg~~L~sgs-----------~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Las--gs~Dg~I~IwDl~t 216 (818)
.|.+.|++|++-- ....+++++++...+.... ...++|...+|.|.+..+++ |..+-.+.++|++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 8999888876432 1356888888744333222 45789999999998665544 45788999999986
Q ss_pred CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC----CEEEEEecCCce-eccccccccceeeeeecCCCEEEEEEc----
Q 003459 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPIRC-HDAVDVGWSRLSDLNVHEGKLLGCSYN---- 287 (818)
Q Consensus 217 ~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd~~~~~~-~~~~~~~~~~v~~l~~~~g~lLatg~~---- 287 (818)
. +...+ ....=..+.|+|.+++++.++-+ .+.+|+...... ...+....... +-..++++++.+...
T Consensus 308 N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~-~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 308 N-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSY-CDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred c-eEEec--CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceE-eeccCCceEEEecCCCccc
Confidence 6 33322 33445778899999999875443 488887654322 21222222211 122368888776643
Q ss_pred --CCeEEEEEecCCCce
Q 003459 288 --QSCVGVWVVDISRIE 302 (818)
Q Consensus 288 --Dg~V~IWdvd~~~~~ 302 (818)
|..|.||++.....-
T Consensus 384 ~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 384 RVDNSIKLWDVYGAKVF 400 (561)
T ss_pred ccCcceEEEEecCchhh
Confidence 788999999877644
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.88 E-value=3.9e-06 Score=91.73 Aligned_cols=176 Identities=16% Similarity=0.193 Sum_probs=137.9
Q ss_pred EeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCeEEEEEcCCCC
Q 003459 24 IGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG-TIKLWDLEEAKIVRTLTGHRS 102 (818)
Q Consensus 24 fsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG-~I~IWDl~t~~~v~~l~~h~~ 102 (818)
|++-++.+++..+. |...|.+...+-.++ -+|...|.-..+..+.+-++.|..|| .+-|+|.++++..+ +...-+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCcc
Confidence 34445667777765 677777765554443 25778899999988888899999999 89999998876544 455678
Q ss_pred CeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCeEE
Q 003459 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN----TVKLWDLTAGKLL 178 (818)
Q Consensus 103 ~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg----~I~IwDl~t~~~i 178 (818)
.|.++..+++|++++++.....|.++|+.++.....-+...+-|+.+.|+|+++|+|-+--+| .|+++|+..++..
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 899999999999999999999999999999987665566678899999999999999988776 5899999987765
Q ss_pred EEEecCCCCEEEEEEeCCCCEEEEEe
Q 003459 179 HDFKCHEGQIQCIDFHPHEFLLATGS 204 (818)
Q Consensus 179 ~~~~~h~~~I~sv~fspdg~~Lasgs 204 (818)
.... ..+.=.+-+|.|++++|..-+
T Consensus 483 ~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 483 DVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EecC-CcccccCcccCCCCcEEEEEe
Confidence 5433 333345678888988776654
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=1.1e-07 Score=107.53 Aligned_cols=244 Identities=13% Similarity=0.160 Sum_probs=180.5
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
+++.||.+.|.-+.|+. ..+-|-+...+|.|.+|-+-++....... ...+.|.+++|+.+|..|+....||.|.+=.
T Consensus 65 QtLeGH~~sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 67899999999999997 55568999999999999987776543332 3467899999999999999999999998887
Q ss_pred CCCCeEEE-EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-------eEEEE----EecCCCCeEEEEEc---
Q 003459 88 LEEAKIVR-TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-------GCIHT----YKGHTRGVNAIRFT--- 152 (818)
Q Consensus 88 l~t~~~v~-~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-------~~i~~----l~~h~~~V~~l~fs--- 152 (818)
++...... .+++ .....+.|++|.+.++.+-.+|.+++||-+.. .+... +......|-.+.|.
T Consensus 144 vdGNRIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~ 221 (1189)
T KOG2041|consen 144 VDGNRIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGP 221 (1189)
T ss_pred eccceecchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCc
Confidence 76544332 2222 22347899999999888889999999997532 12111 11122235566664
Q ss_pred -----CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCC---------eEEEEECCCCe
Q 003459 153 -----PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR---------TVKFWDLETFE 218 (818)
Q Consensus 153 -----pdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg---------~I~IwDl~t~~ 218 (818)
||...|+++...|.+.|..-........+. ..-.+..+.|+++|.+||.++.+. .|++|. .-|+
T Consensus 222 ~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~ 299 (1189)
T KOG2041|consen 222 YQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGH 299 (1189)
T ss_pred cccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchh
Confidence 477889999999998886544333222333 235688999999999999988542 566665 4578
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCC
Q 003459 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI 258 (818)
Q Consensus 219 ~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~ 258 (818)
.+..++.....|++++|-..|-.++.+.+..|.+-++.+.
T Consensus 300 i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 300 IVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE 339 (1189)
T ss_pred heEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence 8888888899999999999999999888877776666554
No 289
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.86 E-value=9.4e-07 Score=92.23 Aligned_cols=218 Identities=17% Similarity=0.115 Sum_probs=144.7
Q ss_pred CCCeEEEEECCCCceEEEecCCC--CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC
Q 003459 37 EDHKVNLWAIGKPNAILSLSGHT--SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114 (818)
Q Consensus 37 ~Dg~V~lWdl~~~~~i~~l~~h~--~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~ 114 (818)
.+|.|..||..+++.+....--. ....+. ..+++..+++++.++.|..||..+|+.+..+.. ...+.... ...+.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 36899999999999998886311 222211 233566777888999999999999999888874 22222111 22456
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEE-ecCC---CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC---
Q 003459 115 FFASGSLDTNLKIWDIRKKGCIHTY-KGHT---RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ--- 187 (818)
Q Consensus 115 ~Lasgs~Dg~I~IwDl~~~~~i~~l-~~h~---~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~--- 187 (818)
.+++++.++.|+.+|..+++.+... .... ..........++..++++..++.|..+|+++|+.+..+......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 7777778899999999999999884 4321 11222333334788999999999999999999999988764322
Q ss_pred -------EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-CCCEEEEEecCCc
Q 003459 188 -------IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HESLKVFSWEPIR 259 (818)
Q Consensus 188 -------I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~~~ 259 (818)
+..-....++ .++.++.++.+.-+|+.+++.+.... ...+..+ ...++..|++++ ++.+..||..+++
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTE
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 1122222344 67777777754444999999775333 2223332 355677777776 5568999988876
Q ss_pred ee
Q 003459 260 CH 261 (818)
Q Consensus 260 ~~ 261 (818)
..
T Consensus 234 ~~ 235 (238)
T PF13360_consen 234 VV 235 (238)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 290
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.84 E-value=1e-06 Score=99.83 Aligned_cols=264 Identities=11% Similarity=0.038 Sum_probs=162.6
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCC----------CeE-EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTS----------GID-SVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~----------~V~-~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (818)
.+++++.+|.|.-+|..+++.+........ .+. .+.. ++..++.++.+|.+..+|.++|+.+.....
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 567777889999999999998887653220 000 0111 355677888899999999999998887764
Q ss_pred CCCCeEE-EEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEE-EEEcC--CCCEEEEEECCCeEEEEECCCC
Q 003459 100 HRSNCIS-VDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA-IRFTP--DGRWVVSGGEDNTVKLWDLTAG 175 (818)
Q Consensus 100 h~~~V~s-v~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~-l~fsp--dg~~L~sgs~Dg~I~IwDl~t~ 175 (818)
.. .+.+ ... .+..+++++.+|.|+.+|..+++.+..+......+.. ..-+| .+..++.++.+|.+..+|..+|
T Consensus 149 ~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G 225 (394)
T PRK11138 149 AG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQG 225 (394)
T ss_pred CC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCC
Confidence 32 2221 112 2456777888999999999999998887643111100 00112 2345777888999999999999
Q ss_pred eEEEEEecCCC-------CEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 176 KLLHDFKCHEG-------QIQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 176 ~~i~~~~~h~~-------~I~sv~fsp--dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
+.+..+..... ....+..+| .+..++.++.+|.+..+|..+|+.+...... ....+... ++..++...
T Consensus 226 ~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~~-~~~vy~~~~ 302 (394)
T PRK11138 226 QLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAVD-GGRIYLVDQ 302 (394)
T ss_pred hhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEEE-CCEEEEEcC
Confidence 88776542110 011111222 2456777778999999999999887664321 11222222 333333344
Q ss_pred CCCEEEEEecCCceeccccc-cccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 247 HESLKVFSWEPIRCHDAVDV-GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 247 ~d~I~Vwd~~~~~~~~~~~~-~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
++.+..++..+++....... ........... +..|..+..||.|.+.|.+++++.-
T Consensus 303 ~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 303 NDRVYALDTRGGVELWSQSDLLHRLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CCeEEEEECCCCcEEEcccccCCCcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEEE
Confidence 44577777766654322211 11111122223 4566778899999999998887543
No 291
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.83 E-value=7e-08 Score=100.15 Aligned_cols=242 Identities=21% Similarity=0.341 Sum_probs=165.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----EEEEEcCCCC------------CeEEEEEeCCCC--EEEE
Q 003459 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-----IVRTLTGHRS------------NCISVDFHPFGE--FFAS 118 (818)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~-----~v~~l~~h~~------------~V~sv~fspdg~--~Las 118 (818)
....|+++.|...|.||++|...|.|.+|.-+... ....|++|.. .|..+.|..++. .|+.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34679999999999999999989999999755432 2233455542 467788876653 5777
Q ss_pred EECCCcEEEEECCCCe-------------------E------------------E-----EEE-ecCCCCeEEEEEcCCC
Q 003459 119 GSLDTNLKIWDIRKKG-------------------C------------------I-----HTY-KGHTRGVNAIRFTPDG 155 (818)
Q Consensus 119 gs~Dg~I~IwDl~~~~-------------------~------------------i-----~~l-~~h~~~V~~l~fspdg 155 (818)
.+.|.+|++|.+.... + + +.+ ..|...|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7789999999875320 0 0 111 3567778899999988
Q ss_pred CEEEEEECCCeEEEEECCCCe---EEEEEecCC-----CCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeEE------
Q 003459 156 RWVVSGGEDNTVKLWDLTAGK---LLHDFKCHE-----GQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELI------ 220 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~-----~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~i------ 220 (818)
..++++ .|=.|.+|++.-.. .+..++.|. .-|++..|+|. ...+.-.+..|.|++-|++...+.
T Consensus 185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 888876 57789999987432 233344443 35889999996 345556667899999999842211
Q ss_pred EE----------eCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCc-eeccc----------------cccccceee
Q 003459 221 GS----------AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIR-CHDAV----------------DVGWSRLSD 273 (818)
Q Consensus 221 ~~----------~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~-~~~~~----------------~~~~~~v~~ 273 (818)
.. +..-...|..+.|+++|+|+++-..-+++|||.+..+ +..++ +.-+..+..
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFei 343 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEI 343 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEE
Confidence 10 1112345788999999999999988899999997543 33222 222333333
Q ss_pred eeecCCCEEEEEEcCCeEEEEEecCCC
Q 003459 274 LNVHEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 274 l~~~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
-+..+.+.+.+|+..+...|+.++++-
T Consensus 344 sfSgd~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 344 SFSGDDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred EecCCcccccccccccceeeeccccCC
Confidence 344566778888888888887755544
No 292
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.81 E-value=1.1e-07 Score=100.05 Aligned_cols=253 Identities=18% Similarity=0.316 Sum_probs=181.6
Q ss_pred CCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcE
Q 003459 48 KPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL-EEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNL 125 (818)
Q Consensus 48 ~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl-~t~~~v~~l~-~h~~~V~sv~fspdg~~Lasgs~Dg~I 125 (818)
++..+..++||.+.|++...-|...-+++.+.|.+++||-- +.++....+. ....++.++.+.+....|++|-.+|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 34456677899999999888888888999999999999953 4455444443 235678999999999999999999999
Q ss_pred EEEEC----CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEE
Q 003459 126 KIWDI----RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLA 201 (818)
Q Consensus 126 ~IwDl----~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~La 201 (818)
.-+.+ +....++.+..|...+..+-|+-...++++.+.|..+..--.+.+..+..+.. ....+++.|.-. +..
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 98855 34556777788999999999998889999999998765555555544332221 111112222111 555
Q ss_pred EEeCCCeEEEEEC--CCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccc-cccccceeeeee-
Q 003459 202 TGSADRTVKFWDL--ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DVGWSRLSDLNV- 276 (818)
Q Consensus 202 sgs~Dg~I~IwDl--~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~-~~~~~~v~~l~~- 276 (818)
.|...|.|.+-.+ ....++..+.+|.+.+.+++|.+..+.|++|..+ .+.+||+...+..... ..+...+..+..
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 6666666655443 4567888999999999999999999999998776 6999999766554322 122222222221
Q ss_pred cCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 277 HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 277 ~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
.--+.|.+++.||.|.+|+.+..+.+.
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~~r~et 276 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNVKRVET 276 (404)
T ss_pred hhheeeeeccCCCeEEEEeccceeecC
Confidence 334788899999999999999888654
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.9e-08 Score=105.73 Aligned_cols=249 Identities=16% Similarity=0.203 Sum_probs=180.4
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC---CceEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECC
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---PNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTIKLWDLE 89 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~---~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I~IWDl~ 89 (818)
-|.+.|+.+.... ..++.+++.||.++.|.-.. -+.+..+..|...|.+++.+-++.++++++. |..++++|++
T Consensus 7 mhrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 5888898887764 56899999999999997532 1334455678889999999999999999777 9999999998
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCC---EEEEE-ECCCcEEEEECCCCeE--EEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003459 90 EAKIVRTLTGHRSNCISVDFHPFGE---FFASG-SLDTNLKIWDIRKKGC--IHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 90 t~~~v~~l~~h~~~V~sv~fspdg~---~Lasg-s~Dg~I~IwDl~~~~~--i~~l~~h~~~V~~l~fspdg~~L~sgs~ 163 (818)
+...+.-++-..-+-.+-.+...|. .++++ -.+|.|.++|-....+ ...-+-|..+|.++.+.+-+..+++...
T Consensus 85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 8765543332111111111222231 34443 3578999999765442 3333469999999999999999999999
Q ss_pred CCeEEEEECCC------CeEEEEEe---------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC---
Q 003459 164 DNTVKLWDLTA------GKLLHDFK---------CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--- 225 (818)
Q Consensus 164 Dg~I~IwDl~t------~~~i~~~~---------~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~--- 225 (818)
.|.|..|.... .+....++ -......++.|+|+|..+.+-+.|..|+++++.+++.+..+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999999872 22222222 1234578999999999999999999999999998875544211
Q ss_pred -----------------------------C-CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccc
Q 003459 226 -----------------------------E-TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV 264 (818)
Q Consensus 226 -----------------------------~-~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~ 264 (818)
+ ...-..+.|...|++|+.|+-=+|+|++++++++...+
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 1 12235678899999999998889999999998776543
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.80 E-value=8e-06 Score=87.36 Aligned_cols=225 Identities=16% Similarity=0.147 Sum_probs=160.9
Q ss_pred EEEEEeeCCCcEEEEEeCCCe-EEEEECCCCceEEEecCCCCCe--EEEEEcCCCCEEEEEEC-----CCeEEEEECC-C
Q 003459 20 NCLKIGRKSSRVLVTGGEDHK-VNLWAIGKPNAILSLSGHTSGI--DSVSFDSSEVLVAAGAA-----SGTIKLWDLE-E 90 (818)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~-V~lWdl~~~~~i~~l~~h~~~V--~~l~fspdg~~Lasgs~-----DG~I~IWDl~-t 90 (818)
-.++.+|.....++.+-.-|+ ..+||..+++....+....+.- -.-.|++||++|++.-. .|.|-|||.. +
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 456778867777777776664 6788998888887765433322 13589999999998644 4899999998 6
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC------------------CCcEEEEECCCCeEEEEEe----cCCCCeEE
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSL------------------DTNLKIWDIRKKGCIHTYK----GHTRGVNA 148 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~------------------Dg~I~IwDl~~~~~i~~l~----~h~~~V~~ 148 (818)
.+.+..+..|.-.-..+.+.|+|+.|+++.. +-++...|..+++.+.+.. .|...|..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 7888889888877788999999988887632 2356677888888877743 37778999
Q ss_pred EEEcCCCCEEEEEECCC-------eEEEEECCCCeEEEEEe-------cCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEE
Q 003459 149 IRFTPDGRWVVSGGEDN-------TVKLWDLTAGKLLHDFK-------CHEGQIQCIDFHPHEFLLATGS-ADRTVKFWD 213 (818)
Q Consensus 149 l~fspdg~~L~sgs~Dg-------~I~IwDl~t~~~i~~~~-------~h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwD 213 (818)
+++.++|..++..-..| -|.+++. +..+..+. ...+.+-+|++++++.++++.+ ..+.+.+||
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 99999997666554433 2444443 23233222 2346789999999998776555 667999999
Q ss_pred CCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCC
Q 003459 214 LETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHES 249 (818)
Q Consensus 214 l~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~ 249 (818)
..+++.+....-. .+..++-.+++ ++++.+.+.
T Consensus 246 ~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 246 AATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CCCCCEeeccccC--ceeeeeecCCc-eEEeCCCcc
Confidence 9999998776443 35667777676 666555544
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=3.7e-07 Score=104.47 Aligned_cols=238 Identities=16% Similarity=0.223 Sum_probs=177.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCC------------CCEEEEEECCCcEE
Q 003459 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPF------------GEFFASGSLDTNLK 126 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspd------------g~~Lasgs~Dg~I~ 126 (818)
...-.++.|++.| +||.|+ ...|.+.|..+.+.++.+.-|...|+.+.|.|- .-.||++...|.|.
T Consensus 15 ~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred cccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 3346778999887 666665 457899999999999999999999999999873 12578888899999
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEcC---CC-CEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCC-CCEEE
Q 003459 127 IWDIRKKGCIHTYKGHTRGVNAIRFTP---DG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-EFLLA 201 (818)
Q Consensus 127 IwDl~~~~~i~~l~~h~~~V~~l~fsp---dg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspd-g~~La 201 (818)
+||...+..+..+..|..++..++|-+ +. ..|++-....+|.+|+..+|+..+.+........|+.+.|- .+.+.
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 999999998889999999999999976 33 46667777889999999999999988876677788999984 45565
Q ss_pred EEeCCCeEEEEECCC-------CeEEEEeCCCCC----------------C---------eeEEEEeCCC-CEEEEEECC
Q 003459 202 TGSADRTVKFWDLET-------FELIGSAGPETS----------------G---------VRCLTFNPDG-RTLLCGLHE 248 (818)
Q Consensus 202 sgs~Dg~I~IwDl~t-------~~~i~~~~~~~~----------------~---------I~sl~fspdg-~~Lasgs~d 248 (818)
.-+..|.+.+-+.-. ++.++....|.. . ...++|+|.- +.++.....
T Consensus 173 ~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~pr 252 (1062)
T KOG1912|consen 173 VLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPR 252 (1062)
T ss_pred EEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEecc
Confidence 556677777665421 333332222211 0 1124577764 455667777
Q ss_pred CEEEEEecCCceeccccccccc---eeeeeecCCCEEEEEEcCCeEEEEEecC
Q 003459 249 SLKVFSWEPIRCHDAVDVGWSR---LSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 249 ~I~Vwd~~~~~~~~~~~~~~~~---v~~l~~~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
.+.|+|++-..|..++...... +..+-.+....|.|.-.||++.+|.-..
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 8999999999888877655542 2223335668899999999999997665
No 296
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.74 E-value=1e-05 Score=82.82 Aligned_cols=117 Identities=18% Similarity=0.163 Sum_probs=89.1
Q ss_pred EEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC
Q 003459 22 LKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR 101 (818)
Q Consensus 22 lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~ 101 (818)
+...++...+++.|+..+.+.-.|..+|+.+.... -...|.+-+.- -|++++.|+..|.+++.+..+|.....+....
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~ 93 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE 93 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence 34456677899999999999999999998876543 22344443332 57789999999999999999998777776333
Q ss_pred CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 003459 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK 140 (818)
Q Consensus 102 ~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~ 140 (818)
.--......+++..+..|+.|++.+..|.++..++.+.+
T Consensus 94 ~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 94 TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 222233456779999999999999999999988887765
No 297
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.72 E-value=3.4e-07 Score=95.18 Aligned_cols=231 Identities=20% Similarity=0.334 Sum_probs=156.4
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-----eEEEecCCC------------CCeEEEEEcCCC--CEEE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHT------------SGIDSVSFDSSE--VLVA 75 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~-----~i~~l~~h~------------~~V~~l~fspdg--~~La 75 (818)
..+.|+++.|.. .|.+|++|...|.|.+|.-+... ....+++|. ..|..+.|..++ ..++
T Consensus 25 ead~ItaVefd~-tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDE-TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEecc-ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 346799999997 77899999999999999764432 122345553 357788886543 3566
Q ss_pred EEECCCeEEEEECCCCe-------------------------------------EE-----EEE-cCCCCCeEEEEEeCC
Q 003459 76 AGAASGTIKLWDLEEAK-------------------------------------IV-----RTL-TGHRSNCISVDFHPF 112 (818)
Q Consensus 76 sgs~DG~I~IWDl~t~~-------------------------------------~v-----~~l-~~h~~~V~sv~fspd 112 (818)
..+.|.+|++|.+.... .+ +.. ..|.-.|.++.|..+
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 66789999999874320 00 011 346667888999988
Q ss_pred CCEEEEEECCCcEEEEECCCCe---EEEEEecCC-----CCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeE------
Q 003459 113 GEFFASGSLDTNLKIWDIRKKG---CIHTYKGHT-----RGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAGKL------ 177 (818)
Q Consensus 113 g~~Lasgs~Dg~I~IwDl~~~~---~i~~l~~h~-----~~V~~l~fspd-g~~L~sgs~Dg~I~IwDl~t~~~------ 177 (818)
...++++ .|=.|.+|++.--. .+..++.|. .-|++..|+|. ...+...+..|.|++.|++...+
T Consensus 184 ~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 8888877 46789999886432 233344454 34788899994 45666777899999999985321
Q ss_pred EEE----------EecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC-eEEEEeCCC------------CCCe---e
Q 003459 178 LHD----------FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF-ELIGSAGPE------------TSGV---R 231 (818)
Q Consensus 178 i~~----------~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~-~~i~~~~~~------------~~~I---~ 231 (818)
+.. |..-...|..+.|+++|+++++-+. -+|+|||++.. .++.++.-| ...| .
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeE
Confidence 111 1112356888999999999988764 58999999864 355554332 2223 3
Q ss_pred EEEEeCCCCEEEEEECC
Q 003459 232 CLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 232 sl~fspdg~~Lasgs~d 248 (818)
.+.|+.|.+.+.+|+..
T Consensus 342 eisfSgd~~~v~sgsy~ 358 (460)
T COG5170 342 EISFSGDDKHVLSGSYS 358 (460)
T ss_pred EEEecCCcccccccccc
Confidence 46788888888888655
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.71 E-value=1.4e-07 Score=96.20 Aligned_cols=196 Identities=20% Similarity=0.286 Sum_probs=123.4
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce------------EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA------------ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~------------i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
|+.+.++ ....|+++..++.+.......+.+ .+.+..|+++-.+-+.+-.++.++++..||.+.++
T Consensus 39 ~~~~~~v--~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLS--AEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeech--hhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 5666666 345688888777776665443332 22233333333333333456679999999999999
Q ss_pred ECCCCeE-EEEEcCCCCCeEEEEEeCCCCEEEEEE-----CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEE
Q 003459 87 DLEEAKI-VRTLTGHRSNCISVDFHPFGEFFASGS-----LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVV 159 (818)
Q Consensus 87 Dl~t~~~-v~~l~~h~~~V~sv~fspdg~~Lasgs-----~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp-dg~~L~ 159 (818)
+.+.-.. ...+......-.+.+....++++.++. .-+..++|+++..+.+..-..-...|.+++-+| ..+.++
T Consensus 117 s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~ 196 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVC 196 (319)
T ss_pred echHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEE
Confidence 9765111 111111111112233333455544432 234577777765443322222234499999999 456777
Q ss_pred EEECCCeEEEEECCCCeE-EEEEecCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCC
Q 003459 160 SGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~I~sv~fsp-dg~~Lasgs~Dg~I~IwDl~t 216 (818)
+|+.||.+.+||.+.... ...++.|..+++.+.||| ++..|+++++||.+.-||..+
T Consensus 197 cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 197 CGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 888999999999998643 334567999999999999 478999999999999999765
No 299
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.67 E-value=2.2e-07 Score=99.92 Aligned_cols=158 Identities=19% Similarity=0.319 Sum_probs=112.9
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCc----eEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeE
Q 003459 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPN----AILSLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAKI 93 (818)
Q Consensus 21 ~lafsp~~~~lLatgs~Dg~V~lWdl~~~~----~i~~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~t~~~ 93 (818)
.+.+++ ++++||.+..+....++++.... .+.... -...-+++.|..+...+..+.. ...+.+|....+..
T Consensus 67 ~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 67 LVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 344455 78889988888877777764332 222222 2233345555555554444444 44555666555433
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172 (818)
Q Consensus 94 v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~-~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl 172 (818)
..+-||-+.++.++|+||+++|+++..|..|++-.....-.+..|. ||...|..++..++ ..|++++.|++|++||+
T Consensus 145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 4456799999999999999999999999999998877655565554 69999999999864 56999999999999999
Q ss_pred CCCeEEEEEe
Q 003459 173 TAGKLLHDFK 182 (818)
Q Consensus 173 ~t~~~i~~~~ 182 (818)
.+|+.+.++.
T Consensus 223 ~sgk~L~t~d 232 (390)
T KOG3914|consen 223 TSGKLLDTCD 232 (390)
T ss_pred ccCCcccccc
Confidence 9999887665
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=6.3e-05 Score=79.44 Aligned_cols=213 Identities=16% Similarity=0.112 Sum_probs=138.8
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEe-CCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 003459 63 DSVSFDS-SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFH-PFGEFFASGSLDTNLKIWDIRKKGCIHTYK 140 (818)
Q Consensus 63 ~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fs-pdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~ 140 (818)
.++.|.+ ++.++++-...+.|+.|+..+++...... .. ...+++. ++ ..|+++...+ +.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-PG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-SS--EEEEEEECTT-SEEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-CC--CceEEEEccC-CEEEEEEcCc-eEEEecCCCcEEEEee
Confidence 4678988 66666666678999999998886644222 22 6777888 55 5555565544 6667998886544333
Q ss_pred c-----CCCCeEEEEEcCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEE-EEeCC
Q 003459 141 G-----HTRGVNAIRFTPDGRWVVSGGED--------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLA-TGSAD 206 (818)
Q Consensus 141 ~-----h~~~V~~l~fspdg~~L~sgs~D--------g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~La-sgs~D 206 (818)
. .....+.+++.++|++.++.... |.|..++.. ++...... .-...+.++|+|+++.|+ +-+..
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccccc
Confidence 2 33567899999999977765543 568888887 55444443 345678999999998765 55677
Q ss_pred CeEEEEECCC--C-----eEEEEeCCCCCCeeEEEEeCCCCEEEEEEC-CCEEEEEecCCceeccccccccceeeeee--
Q 003459 207 RTVKFWDLET--F-----ELIGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFSWEPIRCHDAVDVGWSRLSDLNV-- 276 (818)
Q Consensus 207 g~I~IwDl~t--~-----~~i~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-- 276 (818)
+.|..|++.. . +.+..+....+..-.+++..+|++.++... +.|.+|+-+ ++....+.......+.+.+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg 234 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGG 234 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEES
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEEC
Confidence 8899999853 2 122223333334788999999987776654 458888776 6666666666555555555
Q ss_pred cCCCEEE
Q 003459 277 HEGKLLG 283 (818)
Q Consensus 277 ~~g~lLa 283 (818)
++.+.|.
T Consensus 235 ~~~~~L~ 241 (246)
T PF08450_consen 235 PDGKTLY 241 (246)
T ss_dssp TTSSEEE
T ss_pred CCCCEEE
Confidence 3544443
No 301
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.63 E-value=6.3e-06 Score=84.56 Aligned_cols=222 Identities=14% Similarity=0.112 Sum_probs=142.9
Q ss_pred CCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCCCeEE-EEEcCCCCCeEEEEE
Q 003459 37 EDHKVNLWAIGKPN-AILSLSGHTSGIDSVSFDS-----SEVLVAAGAASGTIKLWDLEEAKIV-RTLTGHRSNCISVDF 109 (818)
Q Consensus 37 ~Dg~V~lWdl~~~~-~i~~l~~h~~~V~~l~fsp-----dg~~Lasgs~DG~I~IWDl~t~~~v-~~l~~h~~~V~sv~f 109 (818)
....+-+|++-+.. .+..+. ..+.|.| .-.+||.|+..|...+|...+.+.. .....|...|.-+.=
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred ceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 33457777764332 222221 3455554 3458999999999999998865533 333334433322211
Q ss_pred eCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEE--EecCC
Q 003459 110 HPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG-KLLHD--FKCHE 185 (818)
Q Consensus 110 spdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~-~~i~~--~~~h~ 185 (818)
..+. --+..++.|.++++.++..+......-...-.+.++.+++|++|+++.+....|..|.+... +.+.. .....
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 1111 23666778888888887654332222111123789999999999999999999999988753 22222 22234
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE-----eCCCCCCeeEEEEeCCCC--EEE-EEECCCEEEEEecC
Q 003459 186 GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-----AGPETSGVRCLTFNPDGR--TLL-CGLHESLKVFSWEP 257 (818)
Q Consensus 186 ~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~-----~~~~~~~I~sl~fspdg~--~La-sgs~d~I~Vwd~~~ 257 (818)
..-.+..|+.....+|++..||++.|||++....... -..|.+.++.+.|++.|. +|+ +-.-..+.|.|...
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 4456788999999999999999999999987543221 234688999999998664 233 33334588999888
Q ss_pred Cceeccc
Q 003459 258 IRCHDAV 264 (818)
Q Consensus 258 ~~~~~~~ 264 (818)
.+.++.+
T Consensus 284 ~~~~q~I 290 (344)
T KOG4532|consen 284 YVNHQVI 290 (344)
T ss_pred CceeeEE
Confidence 8776654
No 302
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.61 E-value=3.8e-07 Score=98.17 Aligned_cols=161 Identities=18% Similarity=0.304 Sum_probs=118.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCe----EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEE---EEECCCC
Q 003459 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK----IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK---IWDIRKK 133 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~----~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~---IwDl~~~ 133 (818)
.+..+..++.+++||++..+....++++.... .+.... -......+.|..+......+..-|.++ +|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34556678899999999888888788775443 222222 233445666666666666665555444 4444444
Q ss_pred eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003459 134 GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFW 212 (818)
Q Consensus 134 ~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sv~fspdg~~Lasgs~Dg~I~Iw 212 (818)
.+. .+-+|-..+..++|+||+++|+++..|..|++-....--.+..|- +|..-|..++.-++. .|++|+.|++|++|
T Consensus 143 ~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLW 220 (390)
T ss_pred Ccc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEE
Confidence 433 344799999999999999999999999999998877666666654 599999999987664 58999999999999
Q ss_pred ECCCCeEEEEeC
Q 003459 213 DLETFELIGSAG 224 (818)
Q Consensus 213 Dl~t~~~i~~~~ 224 (818)
|+.+|+.+..+.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999886653
No 303
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.58 E-value=1.8e-07 Score=106.41 Aligned_cols=206 Identities=24% Similarity=0.344 Sum_probs=150.0
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~-~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
-+.+|...|+.+-|+|+...++++++.|-.+..||+... ..+..+..-......++|+-....+.+.+....|.+||+.
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 357899999999999999999999999999999999765 4455555555667889998755555555677889999998
Q ss_pred CC-eEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEE--EECC
Q 003459 90 EA-KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWVVS--GGED 164 (818)
Q Consensus 90 t~-~~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~-l~~h~~~V~~l~fspdg~~L~s--gs~D 164 (818)
.| .++..+++|...|..++|...- ..+.+.+.||+|+.||......... ......+|..-+|.|-|.-.+. .-.+
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~ 268 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG 268 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCC
Confidence 75 5778889999999999997643 3688899999999999875432221 1224456777777774432222 1112
Q ss_pred CeEEEEECC---------C-CeEEEEEecCCCCEEEEEEeCC----------CCEEEEEeCCCeEEEEECCC
Q 003459 165 NTVKLWDLT---------A-GKLLHDFKCHEGQIQCIDFHPH----------EFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 165 g~I~IwDl~---------t-~~~i~~~~~h~~~I~sv~fspd----------g~~Lasgs~Dg~I~IwDl~t 216 (818)
..+.+++.+ + ...++.|.+|...|....|-.. ...|++-+.|.++++|-+.+
T Consensus 269 n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 269 NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 234444332 2 3578999999988876666432 35799999999999998764
No 304
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=1.7e-07 Score=98.78 Aligned_cols=159 Identities=15% Similarity=0.273 Sum_probs=123.0
Q ss_pred EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-----eEEEEEecCCCCeEEE
Q 003459 75 AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-----GCIHTYKGHTRGVNAI 149 (818)
Q Consensus 75 asgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-----~~i~~l~~h~~~V~~l 149 (818)
++.+.+..|-+-|+++|.. +.|. ..+.|.++.|...+++++.|+.+|.|..+|++.+ .+...+- |...|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 4455677788889887753 3343 5678999999988999999999999999999865 3444454 88899999
Q ss_pred EEcC-CCCEEEEEECCCeEEEEECCCCeE---EEEEecCCCCEEEE--EEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 150 RFTP-DGRWVVSGGEDNTVKLWDLTAGKL---LHDFKCHEGQIQCI--DFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 150 ~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~---i~~~~~h~~~I~sv--~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
.... ++.+|++.+.+|.|++||++.-++ +.++.+|...-.-+ ..++.+..+++++.|...+||.++.+.++.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8776 788999999999999999998766 88888886543333 34455678888999999999999999999887
Q ss_pred CCCC----CCeeEEEEe
Q 003459 224 GPET----SGVRCLTFN 236 (818)
Q Consensus 224 ~~~~----~~I~sl~fs 236 (818)
.... ..+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 5432 234555554
No 305
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.57 E-value=2.2e-05 Score=91.52 Aligned_cols=265 Identities=11% Similarity=0.095 Sum_probs=158.7
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCC------CeE--EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCC
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTS------GID--SVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS 102 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~------~V~--~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~ 102 (818)
.++.++.++.|+-+|..+++.+..+..... .+. .+... ++..++.++.+|.|..+|.++|+.+..+.....
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 466677789999999999998887754322 010 11111 225777888999999999999999988764332
Q ss_pred C-----e-EEEEEeCCCCEEEEEE---------CCCcEEEEECCCCeEEEEEecCCCC--------------------e-
Q 003459 103 N-----C-ISVDFHPFGEFFASGS---------LDTNLKIWDIRKKGCIHTYKGHTRG--------------------V- 146 (818)
Q Consensus 103 ~-----V-~sv~fspdg~~Lasgs---------~Dg~I~IwDl~~~~~i~~l~~h~~~--------------------V- 146 (818)
. + ....+. +..++.++ .+|.|+.+|..+++.+..+...... +
T Consensus 142 ~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 142 VPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred cCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 1 1 111222 24555554 3678999999999988887642110 1
Q ss_pred EEEEEcCCCCEEEEEECCC------------------eEEEEECCCCeEEEEEecCCCCEE------EEEEe----CCCC
Q 003459 147 NAIRFTPDGRWVVSGGEDN------------------TVKLWDLTAGKLLHDFKCHEGQIQ------CIDFH----PHEF 198 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~Dg------------------~I~IwDl~t~~~i~~~~~h~~~I~------sv~fs----pdg~ 198 (818)
...++.+.+..++.++.++ .|.-+|..+|+....++....... ...+. -++.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1234444567788887665 799999999999998763211111 11111 1232
Q ss_pred ---EEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-------------------CCCEEEEEec
Q 003459 199 ---LLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-------------------HESLKVFSWE 256 (818)
Q Consensus 199 ---~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs-------------------~d~I~Vwd~~ 256 (818)
.++.++.+|.+..+|.++|+.+....... ..+..+| ..++.+. .+.+.-+|..
T Consensus 300 ~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~ 374 (488)
T cd00216 300 PVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPK 374 (488)
T ss_pred eeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCC
Confidence 67888899999999999999887653210 1122222 1121110 1123333433
Q ss_pred CCceecccccc---------ccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 257 PIRCHDAVDVG---------WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 257 ~~~~~~~~~~~---------~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
+++..-..... ......-....+.+|.+++.||.|+.+|.+++++.-
T Consensus 375 tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 375 TGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred CCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceee
Confidence 44332222221 111111112355778888899999999999998654
No 306
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=1.2e-07 Score=99.84 Aligned_cols=159 Identities=22% Similarity=0.360 Sum_probs=122.7
Q ss_pred EEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----eEEEEEcCCCCCeEEE
Q 003459 33 VTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA-----KIVRTLTGHRSNCISV 107 (818)
Q Consensus 33 atgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~-----~~v~~l~~h~~~V~sv 107 (818)
++.+.+-.|-+-|++++-.. .|. ..+.|.++.|...++++..|+.+|.|..+|++.+ .+...+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 44455667888888766433 233 5678999999999999999999999999999764 3444454 89999998
Q ss_pred EEeC-CCCEEEEEECCCcEEEEECCCCeE---EEEEecCCCCeEEE--EEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 108 DFHP-FGEFFASGSLDTNLKIWDIRKKGC---IHTYKGHTRGVNAI--RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF 181 (818)
Q Consensus 108 ~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~---i~~l~~h~~~V~~l--~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~ 181 (818)
..-. ++++|++.+.+|.|++||++--++ +.++.+|-..-.-+ -..+....++++++|...+||.++.|.++.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8776 678999999999999999997777 88999886543333 34556778999999999999999999999887
Q ss_pred ecCC----CCEEEEEEe
Q 003459 182 KCHE----GQIQCIDFH 194 (818)
Q Consensus 182 ~~h~----~~I~sv~fs 194 (818)
.... ..+.+++|.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 6432 234555554
No 307
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.56 E-value=7.6e-05 Score=80.00 Aligned_cols=223 Identities=15% Similarity=0.147 Sum_probs=155.8
Q ss_pred CeEEEEEcC-CCCEEEEEECCCe-EEEEECCCCeEEEEEcCCCCCeE--EEEEeCCCCEEEEEEC-----CCcEEEEECC
Q 003459 61 GIDSVSFDS-SEVLVAAGAASGT-IKLWDLEEAKIVRTLTGHRSNCI--SVDFHPFGEFFASGSL-----DTNLKIWDIR 131 (818)
Q Consensus 61 ~V~~l~fsp-dg~~Lasgs~DG~-I~IWDl~t~~~v~~l~~h~~~V~--sv~fspdg~~Lasgs~-----Dg~I~IwDl~ 131 (818)
....++.+| ....++.+-.-|+ ..+||..+++....+....+.-. .-.|++||++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345678888 5566777766664 67899999998877754333221 3679999999998644 4799999998
Q ss_pred -CCeEEEEEecCCCCeEEEEEcCCCCEEEEEE------------------CCCeEEEEECCCCeEEEEEe----cCCCCE
Q 003459 132 -KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG------------------EDNTVKLWDLTAGKLLHDFK----CHEGQI 188 (818)
Q Consensus 132 -~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs------------------~Dg~I~IwDl~t~~~i~~~~----~h~~~I 188 (818)
+.+.+..+..|.-.-..+.+.|||+.|+++- .+..+.+.|..+|+.+.+.. .|.-.|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 6677888888877778899999998888763 13467778888999888754 367789
Q ss_pred EEEEEeCCCCEEEEEeCCC-------eEEEEECCCCeEEEEe-------CCCCCCeeEEEEeCCCCEEEEEECC--CEEE
Q 003459 189 QCIDFHPHEFLLATGSADR-------TVKFWDLETFELIGSA-------GPETSGVRCLTFNPDGRTLLCGLHE--SLKV 252 (818)
Q Consensus 189 ~sv~fspdg~~Lasgs~Dg-------~I~IwDl~t~~~i~~~-------~~~~~~I~sl~fspdg~~Lasgs~d--~I~V 252 (818)
..+++.++|..++..-..| .|.+++... .+..+ ....+.+-+|+++.+|.++++++-. .+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 9999999997777665444 244554433 22222 2235678999999999999877655 4899
Q ss_pred EEecCCceeccccccccceeeeeecCCCEEEEEEc
Q 003459 253 FSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYN 287 (818)
Q Consensus 253 wd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~ 287 (818)
||..+++........- ...+....+.++++++.
T Consensus 244 ~d~~tg~~~~~~~l~D--~cGva~~~~~f~~ssG~ 276 (305)
T PF07433_consen 244 WDAATGRLLGSVPLPD--ACGVAPTDDGFLVSSGQ 276 (305)
T ss_pred EECCCCCEeeccccCc--eeeeeecCCceEEeCCC
Confidence 9999888876543322 22333344445554443
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=7.6e-06 Score=91.07 Aligned_cols=232 Identities=16% Similarity=0.272 Sum_probs=155.7
Q ss_pred EEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEE
Q 003459 22 LKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-----SGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 22 lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~-----DG~I~IWDl~t~~~v~~ 96 (818)
+.||. ++.++|.-..+ .|.||+..+...+-.-.-.-..|....|+|.+++||--.. -..+.+-.+.+++.+++
T Consensus 311 frWS~-DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 311 FRWSH-DDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred EEecc-CCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeee
Confidence 56888 55677766664 5999986553322211123467888999999988876433 24577788888888887
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEE----------CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC--
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGS----------LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-- 164 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs----------~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D-- 164 (818)
-+-|.-.=+.+.|-.+|.+|++-- .-.++-|+.++........-.-...|...+|-|.|+.+++-+..
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence 776655556678888899887632 12245566666544322222345678999999999887765432
Q ss_pred -CeEEEEECCC-C---eEEEEEecCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003459 165 -NTVKLWDLTA-G---KLLHDFKCHEGQIQCIDFHPHEFLLATGS---ADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (818)
Q Consensus 165 -g~I~IwDl~t-~---~~i~~~~~h~~~I~sv~fspdg~~Lasgs---~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fs 236 (818)
.++.+|-+.+ . +++..+. ....+.+.|+|.|.+++.+. ..|.+.++|+....+...-.+.....+.+.|.
T Consensus 469 k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWD 546 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWD 546 (698)
T ss_pred ccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceEC
Confidence 4688888773 2 2333343 24568899999999988765 46899999998544333333334556889999
Q ss_pred CCCCEEEEEEC-------CCEEEEEecC
Q 003459 237 PDGRTLLCGLH-------ESLKVFSWEP 257 (818)
Q Consensus 237 pdg~~Lasgs~-------d~I~Vwd~~~ 257 (818)
|.|+|+++++. .+-++|++..
T Consensus 547 PtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 547 PTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred CCCCEEEEeeehhhhccccceEEEEeec
Confidence 99999998752 3567777654
No 309
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4.6e-06 Score=89.83 Aligned_cols=246 Identities=12% Similarity=0.108 Sum_probs=153.7
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKL 85 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~I 85 (818)
..++-+.+|...|..++|+|....++..++.+.+|+|.|+.+...+..+..| ..+++++|.-++ ++|++|...|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 3455667888999999999976668999999999999999999999988887 789999998754 68889999999999
Q ss_pred EECCCCe-EEEEEcC--CCCCeEEEEEe------CCCCEEEEEECCCcEEEEECCC----CeEEEEEecCCCCeEEEEEc
Q 003459 86 WDLEEAK-IVRTLTG--HRSNCISVDFH------PFGEFFASGSLDTNLKIWDIRK----KGCIHTYKGHTRGVNAIRFT 152 (818)
Q Consensus 86 WDl~t~~-~v~~l~~--h~~~V~sv~fs------pdg~~Lasgs~Dg~I~IwDl~~----~~~i~~l~~h~~~V~~l~fs 152 (818)
||++..+ .+..+.+ ...+|..++.. +.|.+++....+ +..|++.- ..++..+. ..+.+.+++++
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~pG~cismqy~ 339 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PPGICISMQYH 339 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CCcceeeeeec
Confidence 9997543 2222221 12334433332 234445544432 45565431 22222222 24455666666
Q ss_pred CCCCEEEEEECC-C------eE-EEEECCCCeEEEEEe-cC-CCCE-----EEEEE-eCCCCE-EEEEeCCCeEEEEECC
Q 003459 153 PDGRWVVSGGED-N------TV-KLWDLTAGKLLHDFK-CH-EGQI-----QCIDF-HPHEFL-LATGSADRTVKFWDLE 215 (818)
Q Consensus 153 pdg~~L~sgs~D-g------~I-~IwDl~t~~~i~~~~-~h-~~~I-----~sv~f-spdg~~-Lasgs~Dg~I~IwDl~ 215 (818)
+-.+.++..... . .| ---|.++|..+..-+ .+ .+.- +...+ .++.++ +..|...+.+.+||..
T Consensus 340 ~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~ 419 (463)
T KOG1645|consen 340 GVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPH 419 (463)
T ss_pred CccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccc
Confidence 644444443322 1 01 112333444333222 11 0100 11112 233344 4455566789999999
Q ss_pred CCeEEEEeCCCCCCeeEEEEeC--CCCEEEEEECCCEEEEEecC
Q 003459 216 TFELIGSAGPETSGVRCLTFNP--DGRTLLCGLHESLKVFSWEP 257 (818)
Q Consensus 216 t~~~i~~~~~~~~~I~sl~fsp--dg~~Lasgs~d~I~Vwd~~~ 257 (818)
+++.+..+... .+|.+++... .+.||++-.++.++||.|+.
T Consensus 420 s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~es 462 (463)
T KOG1645|consen 420 SFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNES 462 (463)
T ss_pred hhheeeecccC-cceeecceeecCCcchhhheecceEEEEecCC
Confidence 99999888654 7788877554 35688888899999998864
No 310
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.49 E-value=2.2e-06 Score=99.93 Aligned_cols=180 Identities=17% Similarity=0.281 Sum_probs=141.1
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEE
Q 003459 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVD 108 (818)
Q Consensus 29 ~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~ 108 (818)
...++.|+-...+..+|+.+.+......-....|.-+.. +++++++|...|+|.+-|..+.+.++++..|.+.|.++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 344667777777888899888777766655556666664 678999999999999999999999999999999998766
Q ss_pred EeCCCCEEEEEEC---------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEE---CCCC
Q 003459 109 FHPFGEFFASGSL---------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD-GRWVVSGGEDNTVKLWD---LTAG 175 (818)
Q Consensus 109 fspdg~~Lasgs~---------Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd-g~~L~sgs~Dg~I~IwD---l~t~ 175 (818)
. .|+.|++++. |.-|++||++..+.+.-+.-+.++ .-+.|+|. ...+++++..|...+.| +...
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 5 4899998875 456899999988877666655554 45778883 45788889999999999 3332
Q ss_pred -eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003459 176 -KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (818)
Q Consensus 176 -~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwD 213 (818)
.-+..+......+..+++++++..++.|..+|.|.+|-
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 22333444455699999999999999999999999997
No 311
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.48 E-value=2.4e-06 Score=99.70 Aligned_cols=179 Identities=22% Similarity=0.328 Sum_probs=141.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003459 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (818)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~ 150 (818)
+..++.|+....+..+|+.+.+..+...-..+.|.-+.. +++++.+|...|+|.+-|.++.+.++++..|.+.|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 445667777778889999999888877655555665554 478999999999999999999999999999999998776
Q ss_pred EcCCCCEEEEEEC---------CCeEEEEECCCCeEEEEEecCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCC---C
Q 003459 151 FTPDGRWVVSGGE---------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLET---F 217 (818)
Q Consensus 151 fspdg~~L~sgs~---------Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t---~ 217 (818)
.. |+.|+++|. |..|+|||+|.-+.+.-+..+-++ .-+.|+|. -..+++.+..|...+.|..+ -
T Consensus 225 v~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 225 VQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred cc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 64 889999886 456899999988777666655444 56788886 56788888899999999433 2
Q ss_pred -eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEE
Q 003459 218 -ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFS 254 (818)
Q Consensus 218 -~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd 254 (818)
.-+..+.+....+..++++++|..|+.|..+ .|.+|.
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2233455566779999999999999999665 589997
No 312
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.46 E-value=1.3e-06 Score=89.08 Aligned_cols=166 Identities=16% Similarity=0.240 Sum_probs=104.0
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE-EecCCCCCeEEEEEcCCCCEEEEEEC-----CC
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSFDSSEVLVAAGAA-----SG 81 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~-~l~~h~~~V~~l~fspdg~~Lasgs~-----DG 81 (818)
+++.+..|+++=.+-+.+- .+.-+++++.||.+.+++.+....+. .+..-...-.+.++...+++|.++.. -+
T Consensus 81 ~~~~~a~~sep~p~~~~s~-~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 81 PFKVLAKNSEIDPNDACTM-TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred ceeeeeccCCCCCcccccc-cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 3344445554433333333 33458999999999999875421111 11111111122233334555544321 23
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeE-EEEEecCCCCeEEEEEcC-CCCEE
Q 003459 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGC-IHTYKGHTRGVNAIRFTP-DGRWV 158 (818)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~-i~~l~~h~~~V~~l~fsp-dg~~L 158 (818)
..+.|+++..+....-......|.+++-+|..+ .+++|+.||.+-+||.+.... ...++.|+.+++.+-|+| ++..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 456666654332222122233488999999665 677888999999999987743 345678999999999999 77899
Q ss_pred EEEECCCeEEEEECCC
Q 003459 159 VSGGEDNTVKLWDLTA 174 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t 174 (818)
+++++||.+..||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999775
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=1e-07 Score=109.93 Aligned_cols=201 Identities=18% Similarity=0.310 Sum_probs=153.3
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC--cEEE
Q 003459 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--NLKI 127 (818)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg--~I~I 127 (818)
+....+..|+...+|++|+.+.++|++|+..|.|++|++.+|......++|.+.|+.+.-+.+|..+++.+.-. -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 44566778899999999999999999999999999999999999999999999999999999998766655433 4678
Q ss_pred EECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-ec---CCCCEEEEEEeCCCCEEEE
Q 003459 128 WDIRK-KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-KC---HEGQIQCIDFHPHEFLLAT 202 (818)
Q Consensus 128 wDl~~-~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~-~~---h~~~I~sv~fspdg~~Las 202 (818)
|++.. +...+.|. .-.++.|+..-..-+.|+......+||+.++..+.++ .+ ....-++..|+|+..+++-
T Consensus 1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 99864 34444444 3457888865555566666677899999998776663 21 2233478899999887764
Q ss_pred EeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccc
Q 003459 203 GSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV 264 (818)
Q Consensus 203 gs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~ 264 (818)
|| .+||++..+.++.+..... -..-.|+|.|.-++..+ .|||+.+.+.+..+
T Consensus 1248 ---dG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1248 ---DG--VLWDVRIPEAIHRFDQFTD-YGGGGFHPSGNEVIINS----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred ---Cc--eeeeeccHHHHhhhhhhee-cccccccCCCceEEeec----hhhhhHHHHHHhcC
Confidence 55 4899998888877765542 23446999999988765 68999887665443
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=9.2e-06 Score=94.19 Aligned_cols=181 Identities=17% Similarity=0.259 Sum_probs=133.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~ 95 (818)
.+.++|++++ +++|+.|..+|.|++++.. +.. .+...|... ..+|.++++|+.||+|.|..+.+.+...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3567888885 4689999999999999974 333 334445444 6689999999999999999999988877
Q ss_pred EEcCCCCCeEEEEEeCC-----CCEEEEEECCCcEEEEECCC---CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 96 TLTGHRSNCISVDFHPF-----GEFFASGSLDTNLKIWDIRK---KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (818)
Q Consensus 96 ~l~~h~~~V~sv~fspd-----g~~Lasgs~Dg~I~IwDl~~---~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I 167 (818)
++. ...++.+++++|+ .+.+++|+..| +.++.-+- ...+ .+....++|.++.|. |+++|-+..+| |
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v 181 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-V 181 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-c
Confidence 776 5678999999998 45799999888 88776331 1122 344567899999997 77787776555 6
Q ss_pred EEEECCCCeEEEEEecCCCC------EEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 003459 168 KLWDLTAGKLLHDFKCHEGQ------IQCIDFHPHEFLLATGSADRTVKFWDLE 215 (818)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~~------I~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (818)
++||+.+++.+..+...... -..+.|.++. .|+.|- .-+|+|..++
T Consensus 182 ~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 182 KVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGW-GDSVKICSIK 233 (846)
T ss_pred EEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEec-CCeEEEEEEe
Confidence 99999998888777643222 3456776654 445553 4578888887
No 315
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.1e-05 Score=84.81 Aligned_cols=252 Identities=13% Similarity=0.122 Sum_probs=149.3
Q ss_pred EEEEECCCCceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEE
Q 003459 41 VNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFAS 118 (818)
Q Consensus 41 V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~-~Las 118 (818)
+++.+..+.+....+.+|...|..++|+|..+ ++..++.+.+|+|.|+++...+..+..+ ..+++++|..+.. +|.+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 45555445555556677888999999999777 7888999999999999999999998877 7899999998765 6888
Q ss_pred EECCCcEEEEECCCCeE-EEEEec--CCCCeEEEEEc------CCCCEEEEEECCCeEEEEECCC--Ce--EEEEEecCC
Q 003459 119 GSLDTNLKIWDIRKKGC-IHTYKG--HTRGVNAIRFT------PDGRWVVSGGEDNTVKLWDLTA--GK--LLHDFKCHE 185 (818)
Q Consensus 119 gs~Dg~I~IwDl~~~~~-i~~l~~--h~~~V~~l~fs------pdg~~L~sgs~Dg~I~IwDl~t--~~--~i~~~~~h~ 185 (818)
|..+|.|.+||++..+- +..+.+ ...+|..++.- +.|.+|+....+ +..|.+.- +. ++..+. ..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CC
Confidence 88899999999986542 222221 22344444432 234445444433 34555432 11 222222 24
Q ss_pred CCEEEEEEeCCCC-EEEEEeCCC---eEE----EEECCCCeEEEEeC-CC-CC---Ce---eEEEEeCCCCEEEEEECC-
Q 003459 186 GQIQCIDFHPHEF-LLATGSADR---TVK----FWDLETFELIGSAG-PE-TS---GV---RCLTFNPDGRTLLCGLHE- 248 (818)
Q Consensus 186 ~~I~sv~fspdg~-~Lasgs~Dg---~I~----IwDl~t~~~i~~~~-~~-~~---~I---~sl~fspdg~~Lasgs~d- 248 (818)
+...++.+++-.+ .|++.-.+. +++ --|..+|..+..-+ .+ .+ .+ ..+.-.++..+|++-+++
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 5566677766434 334332221 111 12233344333221 11 01 00 112224455666654443
Q ss_pred -CEEEEEecCCceeccccccccceeeeee--cCCCEEEEEEcCCeEEEEEec
Q 003459 249 -SLKVFSWEPIRCHDAVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 249 -~I~Vwd~~~~~~~~~~~~~~~~v~~l~~--~~g~lLatg~~Dg~V~IWdvd 297 (818)
.+.+||.......+.+... .++.++.. -++.-+...-.|..++|+..+
T Consensus 411 n~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ceeEEeccchhheeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 5999999988888877666 55666654 234334444456678877543
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.36 E-value=0.0001 Score=77.07 Aligned_cols=196 Identities=14% Similarity=0.199 Sum_probs=118.6
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-------CCCCeEEEEEcCCC------CEEEEEECCCeEEE
Q 003459 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-------HTSGIDSVSFDSSE------VLVAAGAASGTIKL 85 (818)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~-------h~~~V~~l~fspdg------~~Lasgs~DG~I~I 85 (818)
=.-++|+| ++.+||.+...|+|++||+.. ..+..+.. -..+|..+.|.+.. ..|++-..+|.++-
T Consensus 46 WRkl~WSp-D~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 46 WRKLAWSP-DCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred heEEEECC-CCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 45789999 677999999999999999864 44444432 23567788885422 24666678888887
Q ss_pred EECCC-----CeEEEEEc--C-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003459 86 WDLEE-----AKIVRTLT--G-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (818)
Q Consensus 86 WDl~t-----~~~v~~l~--~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~ 157 (818)
|-+.. .+...++. . +...|.++.|+|..++|++|+.... +.+. -++....+++-....+..+
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Py 193 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPY 193 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCc
Confidence 77532 23333333 2 4678999999999888877764332 0000 0011112222222111110
Q ss_pred --EEEEECCC------eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC
Q 003459 158 --VVSGGEDN------TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (818)
Q Consensus 158 --L~sgs~Dg------~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~ 226 (818)
.++...|+ +..+|.+-+.+...........|..|..+|||.+||+.+.+|.|.+|++.+..+......+
T Consensus 194 yk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 194 YKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 11111121 1133333322222211224678999999999999999999999999999988777665443
No 317
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=1.5e-05 Score=92.37 Aligned_cols=181 Identities=26% Similarity=0.329 Sum_probs=136.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 003459 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l 139 (818)
..+.|++++ +++|+.|+.+|.|++++.... . .+...|... ...|.++++|+.||.|.|..+-+.+...++
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 456666664 678999999999999996533 3 333335443 557999999999999999999888877776
Q ss_pred ecCCCCeEEEEEcCC-----CCEEEEEECCCeEEEEECCC-C-eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003459 140 KGHTRGVNAIRFTPD-----GRWVVSGGEDNTVKLWDLTA-G-KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFW 212 (818)
Q Consensus 140 ~~h~~~V~~l~fspd-----g~~L~sgs~Dg~I~IwDl~t-~-~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~Iw 212 (818)
. ...++.+++++|+ .+.+++||..| +.++.-+- | +.-.......++|.++.|. |.++|-++.+| |++|
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 6 4578999999997 56899999888 77765331 1 1111344567899999995 66888888666 8999
Q ss_pred ECCCCeEEEEeCCCCCCe------eEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 213 DLETFELIGSAGPETSGV------RCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 213 Dl~t~~~i~~~~~~~~~I------~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
|+.+.+.+..+......+ ..+.|.++ ..|+.|-.++|+|..+.
T Consensus 185 d~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGDSVKICSIK 233 (846)
T ss_pred eccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCCeEEEEEEe
Confidence 999999888876654433 45677754 57788888899999887
No 318
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.35 E-value=0.0004 Score=72.64 Aligned_cols=232 Identities=16% Similarity=0.262 Sum_probs=136.1
Q ss_pred EEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEec---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003459 22 LKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLS---GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 22 lafsp~~~~lLatgs~Dg~V~lWdl~~~--~~i~~l~---~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (818)
++.+. +|++||.- .|..|.|-...+. ..+.... ...-.=+.++|+||+.+||.+...|+|+++|+... .+..
T Consensus 3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~ 79 (282)
T PF15492_consen 3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFV 79 (282)
T ss_pred eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEE
Confidence 45565 66666555 4567777654322 1222222 22223567999999999999999999999998753 3334
Q ss_pred EcC-------CCCCeEEEEEeCCC------CEEEEEECCCcEEEEECCC-----CeEEEEE--ec-CCCCeEEEEEcCCC
Q 003459 97 LTG-------HRSNCISVDFHPFG------EFFASGSLDTNLKIWDIRK-----KGCIHTY--KG-HTRGVNAIRFTPDG 155 (818)
Q Consensus 97 l~~-------h~~~V~sv~fspdg------~~Lasgs~Dg~I~IwDl~~-----~~~i~~l--~~-h~~~V~~l~fspdg 155 (818)
+.. ....|..+.|.+.. ..|++-..+|.++-|-+.. .+..+.+ .. +...|.++.|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 332 12456777776532 2466677888888776532 2222333 22 46789999999998
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCE--EEEEeCCC------eEEEEECCCCeEEEEeCCCC
Q 003459 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFL--LATGSADR------TVKFWDLETFELIGSAGPET 227 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~--Lasgs~Dg------~I~IwDl~t~~~i~~~~~~~ 227 (818)
+.|++||.... ..+. -+.....+++-..-.+..+ .++...|+ +..+|.+-+.+.........
T Consensus 160 ~LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 229 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ 229 (282)
T ss_pred CEEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC
Confidence 88888875432 0000 0011122222222111111 11122121 12345444444443334467
Q ss_pred CCeeEEEEeCCCCEEEEEE-CCCEEEEEecCCceeccccc
Q 003459 228 SGVRCLTFNPDGRTLLCGL-HESLKVFSWEPIRCHDAVDV 266 (818)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~~~~~~~~~~ 266 (818)
..|..|..||||..|++.. .+.|.+|++...+....+..
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 7899999999999999875 45699999988777655543
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.30 E-value=0.00033 Score=84.94 Aligned_cols=198 Identities=18% Similarity=0.233 Sum_probs=136.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC----C--
Q 003459 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR----K-- 132 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~----~-- 132 (818)
...|.++.|..+...++.+...|.|.+-|.++..... ...-...|.+++|+||++.++..+..+++.+-+-. .
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 3589999999999999999999999999988765322 22245789999999999999999888887765420 0
Q ss_pred ---------CeEE--------EEEecC---------------------CCCeEEEEEcCCCCEEEEEE----CC-CeEEE
Q 003459 133 ---------KGCI--------HTYKGH---------------------TRGVNAIRFTPDGRWVVSGG----ED-NTVKL 169 (818)
Q Consensus 133 ---------~~~i--------~~l~~h---------------------~~~V~~l~fspdg~~L~sgs----~D-g~I~I 169 (818)
++.+ ..|.+. .+.=+.|.|-.||.++++.. .+ ..|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 0000 111110 11123589999999998843 23 68999
Q ss_pred EECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCC---CeEEEEeCCCCCCeeEEEEeCCCCEEE
Q 003459 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS---ADRTVKFWDLET---FELIGSAGPETSGVRCLTFNPDGRTLL 243 (818)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs---~Dg~I~IwDl~t---~~~i~~~~~~~~~I~sl~fspdg~~La 243 (818)
||-. |.+-..-....+.-.+++|-|.|.++++-. .|+.|.+|.-+. +.....+......+..++|+.++..|+
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLA 305 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILA 305 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCcee
Confidence 9976 544333333344557899999999998864 456799998543 333323333344489999999999999
Q ss_pred E---EECCC-EEEEEecCC
Q 003459 244 C---GLHES-LKVFSWEPI 258 (818)
Q Consensus 244 s---gs~d~-I~Vwd~~~~ 258 (818)
+ ...+. +++|-....
T Consensus 306 v~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 306 VVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeecccccceEEEEEecCe
Confidence 7 44444 888876654
No 320
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.29 E-value=0.00028 Score=82.03 Aligned_cols=260 Identities=10% Similarity=0.073 Sum_probs=161.1
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCC-------------CCeE-------EEEE-------------cCCCCEEEEE
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHT-------------SGID-------SVSF-------------DSSEVLVAAG 77 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~-------------~~V~-------~l~f-------------spdg~~Lasg 77 (818)
.|.+|+..|.|+|+-+.+.+.++.+...+ ..|. .+.| ..||++|+.-
T Consensus 68 ~f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~fin 147 (635)
T PRK02888 68 GFWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIN 147 (635)
T ss_pred EEeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEe
Confidence 47888999999999998887776653110 0010 1122 1256777775
Q ss_pred EC-CCeEEEEECCCCeEEEEEcC-CCCCeEEEE-------------------EeCCCCEEEE-EECCCcEEEEECCCCeE
Q 003459 78 AA-SGTIKLWDLEEAKIVRTLTG-HRSNCISVD-------------------FHPFGEFFAS-GSLDTNLKIWDIRKKGC 135 (818)
Q Consensus 78 s~-DG~I~IWDl~t~~~v~~l~~-h~~~V~sv~-------------------fspdg~~Las-gs~Dg~I~IwDl~~~~~ 135 (818)
.. ++.|...+++..++-+.+.- ....+..+. +.|+|+.+.. .-..+.+.+.|..+.+.
T Consensus 148 dk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV 227 (635)
T PRK02888 148 DKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEV 227 (635)
T ss_pred cCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceE
Confidence 53 45566666655444333221 112222222 3445543322 22245677778888777
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003459 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGED----NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211 (818)
Q Consensus 136 i~~l~~h~~~V~~l~fspdg~~L~sgs~D----g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~I 211 (818)
..++.--. ....++++++|+++++.+.+ ..+...+..+...+..|.. ..+ -.+.++|++...+ ++.|.+
T Consensus 228 ~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni--~~i--ea~vkdGK~~~V~--gn~V~V 300 (635)
T PRK02888 228 AWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI--ARI--EEAVKAGKFKTIG--GSKVPV 300 (635)
T ss_pred EEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch--HHH--HHhhhCCCEEEEC--CCEEEE
Confidence 77765433 45678999999999888632 2333333332222222221 000 1334577766663 678999
Q ss_pred EECCC-----CeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC--CCEEEEEecCCce------------ecccccccccee
Q 003459 212 WDLET-----FELIGSAGPETSGVRCLTFNPDGRTLLCGLH--ESLKVFSWEPIRC------------HDAVDVGWSRLS 272 (818)
Q Consensus 212 wDl~t-----~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~--d~I~Vwd~~~~~~------------~~~~~~~~~~v~ 272 (818)
+|..+ .+.+..+. -......+.++|||+++++++. +.+.|+|+...+. ...+.++-.++.
T Consensus 301 ID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLH 379 (635)
T PRK02888 301 VDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLH 379 (635)
T ss_pred EECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcce
Confidence 99998 34444443 3445689999999999998754 4699999987653 445567777777
Q ss_pred eeeecCCCEEEEEEcCCeEEEEEecC
Q 003459 273 DLNVHEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 273 ~l~~~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
..+..+|....+-+-|..|-.|+++.
T Consensus 380 TaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 380 TAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEECCCCCEEEeEeecceeEEEehHH
Confidence 77777888888999999999999987
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.26 E-value=0.00037 Score=81.09 Aligned_cols=209 Identities=12% Similarity=0.088 Sum_probs=132.4
Q ss_pred cCCCCEEEE-EECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC----cEEEEECCCCeEEEEEecC
Q 003459 68 DSSEVLVAA-GAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT----NLKIWDIRKKGCIHTYKGH 142 (818)
Q Consensus 68 spdg~~Las-gs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg----~I~IwDl~~~~~i~~l~~h 142 (818)
.+||+.+.. .-..+.+.++|.++.+...++.-. .....++++++|+++++.+.+. ++...+......+..+...
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~ 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH
Confidence 445554422 223466778888887777776532 3456789999999988886432 3333333222222222110
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-----CeEEEEEecCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCC
Q 003459 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA-----GKLLHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLET 216 (818)
Q Consensus 143 ~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t-----~~~i~~~~~h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t 216 (818)
. + -++.++|++... .++.|.++|.++ .+.+..+. -......+.++|||+++++++ .+.+|.|+|+.+
T Consensus 280 ~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 280 R--I--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred H--H--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 0 0 133457887776 367899999998 34555554 345668999999999877665 588999999988
Q ss_pred CeE------------EEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC----------Cceeccccccccceee
Q 003459 217 FEL------------IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP----------IRCHDAVDVGWSRLSD 273 (818)
Q Consensus 217 ~~~------------i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~----------~~~~~~~~~~~~~v~~ 273 (818)
.+. +..... .......+|+++|....+-.-+ .+..|+++. ....+.+++++.+-..
T Consensus 353 ~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~ 431 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN 431 (635)
T ss_pred hhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee
Confidence 653 333333 3345678899999866655544 588899876 3455666777766554
Q ss_pred ee------ecCCCEEEEE
Q 003459 274 LN------VHEGKLLGCS 285 (818)
Q Consensus 274 l~------~~~g~lLatg 285 (818)
.. -++|++|++.
T Consensus 432 ~~~~g~t~~~dgk~l~~~ 449 (635)
T PRK02888 432 HASMGETKEADGKWLVSL 449 (635)
T ss_pred eecCCCcCCCCCCEEEEc
Confidence 44 3678888765
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.26 E-value=0.00028 Score=85.46 Aligned_cols=216 Identities=13% Similarity=0.216 Sum_probs=141.1
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC----CCCe
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL----EEAK 92 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl----~t~~ 92 (818)
+.|.++.|.- +..-++.+..+|.|.+-|..+..... ...-...|.+++|+||+..++..+..+++.+-+- -..+
T Consensus 69 ~~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 69 DEIVSVQFLA-DTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred cceEEEEEec-ccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 5789999987 45567778888999999876554322 2224678999999999999999988888765432 1111
Q ss_pred E-------------------EEEEcCC---------------------CCCeEEEEEeCCCCEEEEE-----ECCCcEEE
Q 003459 93 I-------------------VRTLTGH---------------------RSNCISVDFHPFGEFFASG-----SLDTNLKI 127 (818)
Q Consensus 93 ~-------------------v~~l~~h---------------------~~~V~sv~fspdg~~Lasg-----s~Dg~I~I 127 (818)
. -..|.|. .+.=..|.|--||++|++. .....|++
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 1 1112211 1112358999999999983 22378999
Q ss_pred EECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEE----EecCCCCEEEEEEeCCCCEE
Q 003459 128 WDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG---EDNTVKLWDLTAGKLLHD----FKCHEGQIQCIDFHPHEFLL 200 (818)
Q Consensus 128 wDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs---~Dg~I~IwDl~t~~~i~~----~~~h~~~I~sv~fspdg~~L 200 (818)
||-+ +..-..-....+.-.+++|-|.|.++++-. .|+.|.+|.-+ |-.-.. +......+..++|+.++..|
T Consensus 227 ~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 227 YDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred eccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecCCCCce
Confidence 9976 443333333344456899999999988764 45678888843 432222 22234458999999999999
Q ss_pred EE---EeCCCeEEEEECCCCeE--EEEeCCCCCCeeEEEEeCC
Q 003459 201 AT---GSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPD 238 (818)
Q Consensus 201 as---gs~Dg~I~IwDl~t~~~--i~~~~~~~~~I~sl~fspd 238 (818)
|+ ......|++|-+.+..- ...+....... +.|+|.
T Consensus 305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~ 345 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPV 345 (1265)
T ss_pred eeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCC
Confidence 98 55555699999887542 22232222222 788884
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00013 Score=85.42 Aligned_cols=219 Identities=14% Similarity=0.181 Sum_probs=144.2
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCC-eEEEEEcCCCCEEEEEECCC-----eEEEEECCCC
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSG-IDSVSFDSSEVLVAAGAASG-----TIKLWDLEEA 91 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~-V~~l~fspdg~~Lasgs~DG-----~I~IWDl~t~ 91 (818)
.|+| |++ ++..+|.|+.+|.|.+++- ..+.+..++.+... |..+....+..+|++.+.|+ .|+|||++..
T Consensus 27 ~isc--~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 27 AISC--CSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred ceeE--EcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 4555 455 5557999999999998873 34455777777777 55554444556777776664 4899998643
Q ss_pred ------eEE---EEEc----CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC--C--CeEEEEEecCCCCeEEEEEcCC
Q 003459 92 ------KIV---RTLT----GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR--K--KGCIHTYKGHTRGVNAIRFTPD 154 (818)
Q Consensus 92 ------~~v---~~l~----~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~--~--~~~i~~l~~h~~~V~~l~fspd 154 (818)
+++ +.+. ....++.+++.+.+-+.+|+|-.+|.|..+.-+ . +....-......+|+.+.+..+
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 233 1121 124578899999998999999999999998422 1 1111111224578999999998
Q ss_pred CCEEEEEECCCeEEEEECCCCeE-EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC-CCCCCeeE
Q 003459 155 GRWVVSGGEDNTVKLWDLTAGKL-LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-PETSGVRC 232 (818)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~-i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~-~~~~~I~s 232 (818)
+..++-+.....|.+|.+....+ ...+..|...+.|..|++...-+++++ +..|.+||....++...+. ++. .-
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~k---k~ 258 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEK---KE 258 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCe---EE
Confidence 88744444566889999874332 444666778899999988765455544 4579999998766666665 443 22
Q ss_pred EEEeCCCCEEEE
Q 003459 233 LTFNPDGRTLLC 244 (818)
Q Consensus 233 l~fspdg~~Las 244 (818)
+.|..-|.+|++
T Consensus 259 ~~~~~~g~~L~v 270 (933)
T KOG2114|consen 259 MLVFSFGLLLCV 270 (933)
T ss_pred EEEEecCEEEEE
Confidence 333333555554
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00022 Score=83.52 Aligned_cols=194 Identities=15% Similarity=0.199 Sum_probs=133.9
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCC-----cEEEEECCCC------
Q 003459 66 SFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDT-----NLKIWDIRKK------ 133 (818)
Q Consensus 66 ~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg-----~I~IwDl~~~------ 133 (818)
+|++.+..++.|+.+|.|.+++ ..-+.++.++.+...+...-|.-++ .+|++.+.|+ .|+|||+..-
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 4678888999999999888887 3345557777776663333344444 5777766654 5999998632
Q ss_pred eEEE--EEec-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC----CeEEEEEecCCCCEEEEEEeCCCCEEEE
Q 003459 134 GCIH--TYKG-----HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA----GKLLHDFKCHEGQIQCIDFHPHEFLLAT 202 (818)
Q Consensus 134 ~~i~--~l~~-----h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t----~~~i~~~~~h~~~I~sv~fspdg~~Las 202 (818)
.++. .+.. ...++.+++.+.+-+.+|+|-.+|.|.++.-.- |...........+|+.+.+..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 2331 2222 246788999999999999999999999985321 1111111224678999999998877333
Q ss_pred EeCCCeEEEEECCCCeE-EEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCce
Q 003459 203 GSADRTVKFWDLETFEL-IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRC 260 (818)
Q Consensus 203 gs~Dg~I~IwDl~t~~~-i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~ 260 (818)
......|.+|.+....+ ......++..+.|..|++.-..++++....+.+|+.+....
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGP 247 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcce
Confidence 33456799999985442 44477788889999998765558888888899998775443
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=0.0016 Score=67.19 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=100.8
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003459 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (818)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~ 150 (818)
..+++.|+..+.+.-.|..+|+.+..-. -...|.+-+.- -|++++.|+..|.+++.+..+|..++.+.....--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 5678889999999999999998776533 12233322222 478899999999999999999988888764333222344
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 003459 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (818)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (818)
..+++..+..|+.|+..+..|.++..++...++..+...+-+..|....|+.+...|.|.--...
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccC
Confidence 56789999999999999999999999999888655555555566633334444444544443333
No 326
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.16 E-value=0.0019 Score=75.99 Aligned_cols=188 Identities=12% Similarity=0.121 Sum_probs=120.8
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCC-CCeE---E-------EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHT-SGID---S-------VSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~-~~V~---~-------l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (818)
.+++++.++.|+-+|..+++.+..+.... ..+. + +++ .+..++.++.|+.|.-+|..+|+.+.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 56667778899999999999988775321 1111 1 122 234677788899999999999999877652
Q ss_pred CCCC-eEEEEEeC--CCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCC--------------------------
Q 003459 100 HRSN-CISVDFHP--FGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHTR-------------------------- 144 (818)
Q Consensus 100 h~~~-V~sv~fsp--dg~~Lasgs~------Dg~I~IwDl~~~~~i~~l~~h~~-------------------------- 144 (818)
.... -..+.-.| .+..++++.. +|.|+.+|.++++.+..+..-..
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~ 228 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAW 228 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCcc
Confidence 1110 00111111 1335555543 68999999999998877542110
Q ss_pred -----Ce-EEEEEcCCCCEEEEEECC-----C-----------eEEEEECCCCeEEEEEecCCCCEE---------EEEE
Q 003459 145 -----GV-NAIRFTPDGRWVVSGGED-----N-----------TVKLWDLTAGKLLHDFKCHEGQIQ---------CIDF 193 (818)
Q Consensus 145 -----~V-~~l~fspdg~~L~sgs~D-----g-----------~I~IwDl~t~~~i~~~~~h~~~I~---------sv~f 193 (818)
.+ ..+.+.+...+++.+... + .|.-.|+++|+....|+.....++ -+.+
T Consensus 229 ~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~ 308 (527)
T TIGR03075 229 KTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDL 308 (527)
T ss_pred ccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEe
Confidence 11 134566656666665521 2 678889999999988875222221 1222
Q ss_pred eCCCC---EEEEEeCCCeEEEEECCCCeEE
Q 003459 194 HPHEF---LLATGSADRTVKFWDLETFELI 220 (818)
Q Consensus 194 spdg~---~Lasgs~Dg~I~IwDl~t~~~i 220 (818)
..+|. .++.+..+|.+++.|-++|+.+
T Consensus 309 ~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 309 KKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 24665 8889999999999999999986
No 327
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.10 E-value=0.0023 Score=74.72 Aligned_cols=232 Identities=15% Similarity=0.161 Sum_probs=143.2
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCC--eEEEEEcC--CCCEEEEEE---------CCCeEEEEECCCCeEEEE
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSG--IDSVSFDS--SEVLVAAGA---------ASGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~--V~~l~fsp--dg~~Lasgs---------~DG~I~IWDl~t~~~v~~ 96 (818)
..++.++.+|.|+.+|..+++.+..+...... -..+.-+| .+.+++.++ .+|.|..+|..+|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 45777888999999999999999887643221 00111111 124455554 368899999999998887
Q ss_pred EcCCCCC--------------------e-EEEEEeCCCCEEEEEECCC------------------cEEEEECCCCeEEE
Q 003459 97 LTGHRSN--------------------C-ISVDFHPFGEFFASGSLDT------------------NLKIWDIRKKGCIH 137 (818)
Q Consensus 97 l~~h~~~--------------------V-~sv~fspdg~~Lasgs~Dg------------------~I~IwDl~~~~~i~ 137 (818)
+...... + ....+.+.+..+++++.++ .|.-+|..+++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 7532110 1 1233444567788887665 79999999999998
Q ss_pred EEecCCCCeE------EEEEc----CCCC---EEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEE-
Q 003459 138 TYKGHTRGVN------AIRFT----PDGR---WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG- 203 (818)
Q Consensus 138 ~l~~h~~~V~------~l~fs----pdg~---~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasg- 203 (818)
.++.-..... ...+. -+|. .+++++.+|.+..+|.++|+.+...... ...+...| + .++.+
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~-~vyv~~ 345 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-G-LVYLGA 345 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-c-eEEEcc
Confidence 8753111111 01111 1343 5778889999999999999999876532 11233344 2 23222
Q ss_pred -----------------eCCCeEEEEECCCCeEEEEeCCCC--------CCe--eEEEEeCCCCEEEEEEC-CCEEEEEe
Q 003459 204 -----------------SADRTVKFWDLETFELIGSAGPET--------SGV--RCLTFNPDGRTLLCGLH-ESLKVFSW 255 (818)
Q Consensus 204 -----------------s~Dg~I~IwDl~t~~~i~~~~~~~--------~~I--~sl~fspdg~~Lasgs~-d~I~Vwd~ 255 (818)
..+|.|.-+|..+++.+....... .+. ..+.. .+..|++++. +.+..+|.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~ 423 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDA 423 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEEC
Confidence 246789999999999887764331 111 11222 4456666654 45888888
Q ss_pred cCCceeccccccc
Q 003459 256 EPIRCHDAVDVGW 268 (818)
Q Consensus 256 ~~~~~~~~~~~~~ 268 (818)
++++.....+...
T Consensus 424 ~tG~~lW~~~~~~ 436 (488)
T cd00216 424 TTGKELWKFRTPS 436 (488)
T ss_pred CCCceeeEEECCC
Confidence 8887766555443
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.08 E-value=0.00084 Score=75.80 Aligned_cols=235 Identities=16% Similarity=0.190 Sum_probs=138.1
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-------------------------------------------EEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-------------------------------------------ILS 54 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~-------------------------------------------i~~ 54 (818)
.|+++.|+++.. -|++|...|.|.||.+...+. ...
T Consensus 3 ~v~~vs~a~~t~-Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETL-ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTT-EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCc-eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 588999999544 588999999999997632111 111
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc--C------CCCCeEEEEEeC-----CC---CEEEE
Q 003459 55 LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT--G------HRSNCISVDFHP-----FG---EFFAS 118 (818)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~--~------h~~~V~sv~fsp-----dg---~~Las 118 (818)
+....++|++++.+ |--+++.|..+|.+.|.|++....+..-. . ....+.++.|.- |+ -.+++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 22346889999987 44599999999999999998877776532 1 233577888862 22 36899
Q ss_pred EECCCcEEEEECC--C-CeEE----EEEecCCCCeEEEE-EcCC-C-------------------CEEEEEECCCeEEEE
Q 003459 119 GSLDTNLKIWDIR--K-KGCI----HTYKGHTRGVNAIR-FTPD-G-------------------RWVVSGGEDNTVKLW 170 (818)
Q Consensus 119 gs~Dg~I~IwDl~--~-~~~i----~~l~~h~~~V~~l~-fspd-g-------------------~~L~sgs~Dg~I~Iw 170 (818)
|+..|.+.+|.+. . +... .....+.++|..+. |+.+ | +.++....+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999774 1 2221 11224556666655 3221 1 234455567889999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEe-----CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCC----CCeeEEEEeCCCCE
Q 003459 171 DLTAGKLLHDFKCHEGQIQCIDFH-----PHEFLLATGSADRTVKFWDLETFELIGSAGPET----SGVRCLTFNPDGRT 241 (818)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sv~fs-----pdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~----~~I~sl~fspdg~~ 241 (818)
..-+.+..+...........+.+- ..+..|++-..+|.|++|.+...+.+....... ..+....|+++|..
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi 320 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDI 320 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-E
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCE
Confidence 998887766655222233344553 357788999999999999999999887765532 23456778899988
Q ss_pred EEEEECCCEEEEE
Q 003459 242 LLCGLHESLKVFS 254 (818)
Q Consensus 242 Lasgs~d~I~Vwd 254 (818)
++..+...+.+|.
T Consensus 321 ~~~~gpsE~~l~s 333 (395)
T PF08596_consen 321 FYWTGPSEIQLFS 333 (395)
T ss_dssp EEE-SSSEEEEEE
T ss_pred EEEeCcccEEEEE
Confidence 8766555444443
No 329
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.08 E-value=1.2e-05 Score=59.09 Aligned_cols=39 Identities=38% Similarity=1.044 Sum_probs=37.0
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 133 KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 133 ~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
++++.++.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999998
No 330
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.07 E-value=1.3e-05 Score=58.84 Aligned_cols=39 Identities=38% Similarity=0.786 Sum_probs=37.0
Q ss_pred CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003459 175 GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (818)
Q Consensus 175 ~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwD 213 (818)
|+++..+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 331
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=0.00011 Score=85.19 Aligned_cols=188 Identities=12% Similarity=0.154 Sum_probs=121.2
Q ss_pred CCEEEEEEeeCCCcEEEEEe----CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 17 STVNCLKIGRKSSRVLVTGG----EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs----~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (818)
+.-+-..|+| ...+|++++ ..|.|.||- ++|++..... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+
T Consensus 16 avsti~SWHP-sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 16 AVSTISSWHP-SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred ccccccccCC-CCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 3334467999 667788775 358888885 4555433222 12235679999999999999999999999988777
Q ss_pred EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCC--CC--eEEEEEcCCCC------EEEE
Q 003459 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--GHT--RG--VNAIRFTPDGR------WVVS 160 (818)
Q Consensus 93 ~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~--~h~--~~--V~~l~fspdg~------~L~s 160 (818)
.-.....|..+|..+.|+++|..++++..-|.|.+|.......++... .|. .. ..|...++++. ..++
T Consensus 93 ~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaV 172 (1416)
T KOG3617|consen 93 THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAV 172 (1416)
T ss_pred eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhc
Confidence 666667799999999999999999999999999999876433332211 121 22 34555566632 2233
Q ss_pred EECCCeEE-EEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 003459 161 GGEDNTVK-LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (818)
Q Consensus 161 gs~Dg~I~-IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (818)
.+++..+- .++.+......... |. -.|+|..++.++.+|+|+-.|-.
T Consensus 173 tgDe~alD~~fnwk~~~a~rs~~-ks-------gv~~g~~F~~~~~~GtVyyvdq~ 220 (1416)
T KOG3617|consen 173 TGDESALDEPFNWKESLAERSDE-KS-------GVPKGTEFLFAGKSGTVYYVDQN 220 (1416)
T ss_pred cCchhhhcccccCccchhhcccc-cc-------CCCCCcEEEEEcCCceEEEEcCC
Confidence 44443332 33332111111110 11 13678888888899999888743
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.05 E-value=0.002 Score=68.00 Aligned_cols=200 Identities=9% Similarity=0.173 Sum_probs=121.8
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH-TSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h-~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
+.+.+-...+..++|.|+++.++++....+.|.-++. +++.+..+.-. .+...+|++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3555666779999999988889999999999988886 57777776533 356889999888888877666899999998
Q ss_pred CCC------eEEEEEc-----CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC---CeEEEEE--------ecCCCCe
Q 003459 89 EEA------KIVRTLT-----GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---KGCIHTY--------KGHTRGV 146 (818)
Q Consensus 89 ~t~------~~v~~l~-----~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~---~~~i~~l--------~~h~~~V 146 (818)
... .....+. .+...+-.++|.+.++.|+++-...-..+|.+.. ...+... ......+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 432 1112221 2445689999999988888877776666666543 2222111 1133457
Q ss_pred EEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEecCC---------CCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003459 147 NAIRFTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE---------GQIQCIDFHPHEFLLATGSADRTVKFW 212 (818)
Q Consensus 147 ~~l~fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~---------~~I~sv~fspdg~~Lasgs~Dg~I~Iw 212 (818)
.+++++|. |++++.......|..+| .+|+.+..+.-.. ...-.|+|.++|.+.+++ +-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 88999995 56666677778899999 6687776665322 256789999998665554 55555444
No 333
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.4e-05 Score=85.41 Aligned_cols=203 Identities=18% Similarity=0.190 Sum_probs=144.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCCC
Q 003459 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE---AKIVRTLTGHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKK 133 (818)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t---~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~ 133 (818)
|.+.|+.+.-. -.+++.+++.||.++.|.-.. -+.+..+..|...|.+++.+-++-.+.+.+. |..++++|+.+-
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 77777776543 556899999999999998543 2345556678889999999999999999777 999999999876
Q ss_pred eEEEEEecC--CCCeEEEEEcCCC----CEEEEEECCCeEEEEECCCCe-EEEEE-ecCCCCEEEEEEeCCCCEEEEEeC
Q 003459 134 GCIHTYKGH--TRGVNAIRFTPDG----RWVVSGGEDNTVKLWDLTAGK-LLHDF-KCHEGQIQCIDFHPHEFLLATGSA 205 (818)
Q Consensus 134 ~~i~~l~~h--~~~V~~l~fspdg----~~L~sgs~Dg~I~IwDl~t~~-~i~~~-~~h~~~I~sv~fspdg~~Lasgs~ 205 (818)
..+..++.. .+.+. .+...| ..-++.-.+|.+.++|-.... ....+ +-|..+|.++.+.+-+..+++...
T Consensus 87 DminmiKL~~lPg~a~--wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFAE--WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred chhhhcccccCCCceE--EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 655443321 22222 122223 222333467889999977543 33333 358999999999999999999999
Q ss_pred CCeEEEEECCC-Ce-----EEE---------EeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceecc
Q 003459 206 DRTVKFWDLET-FE-----LIG---------SAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA 263 (818)
Q Consensus 206 Dg~I~IwDl~t-~~-----~i~---------~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~ 263 (818)
.|.|.-|..+. .+ ... .+........++.|+|+|..+.+-..+ .++++.+.+++..+.
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhh
Confidence 99999998872 11 111 122235567899999999999876555 699999988765443
No 334
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.00 E-value=0.0041 Score=66.60 Aligned_cols=231 Identities=17% Similarity=0.193 Sum_probs=135.4
Q ss_pred CCCCEEEEEECCCeEEEEECCC-CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE---------
Q 003459 69 SSEVLVAAGAASGTIKLWDLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT--------- 138 (818)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t-~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~--------- 138 (818)
..++.|+.|+.+| |.++++.. ....... +...|..+...+.-+.+++-+ |+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4677899999998 99999833 3333322 233499999998877776664 59999999875443331
Q ss_pred -----EecCCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCC-----eEEEEEecCCCCEEEEEEeCCCCEEEEEeCC
Q 003459 139 -----YKGHTRGVNAIR--FTPDGRWVVSGGEDNTVKLWDLTAG-----KLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (818)
Q Consensus 139 -----l~~h~~~V~~l~--fspdg~~L~sgs~Dg~I~IwDl~t~-----~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D 206 (818)
.......+..++ -...+...++......|.+|..... +...++. -...+..++|. +..|+.|..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 011223444444 1123334444445558888877653 4556665 35778999998 4577777754
Q ss_pred CeEEEEECCCCeEEEEeCCCC------------CCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccceeee
Q 003459 207 RTVKFWDLETFELIGSAGPET------------SGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDL 274 (818)
Q Consensus 207 g~I~IwDl~t~~~i~~~~~~~------------~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l 274 (818)
...+.|+.++.....+.... .++..+.+ +++.+|++- ++ +-+|-=..++........|...-..
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~-~g~fv~~~G~~~r~~~i~W~~~p~~ 233 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-DN-IGVFVNKNGEPSRKSTIQWSSAPQS 233 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe-cc-eEEEEcCCCCcCcccEEEcCCchhE
Confidence 47888998776544332211 12333333 345666653 33 3333333333333444556442222
Q ss_pred eecCCCEEEEEEcCCeEEEEEecCCCceeeeecccce
Q 003459 275 NVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIGSVTR 311 (818)
Q Consensus 275 ~~~~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~~~~ 311 (818)
......+|++-. ++.|.||++..+++.........+
T Consensus 234 ~~~~~pyli~~~-~~~iEV~~~~~~~lvQ~i~~~~~~ 269 (275)
T PF00780_consen 234 VAYSSPYLIAFS-SNSIEVRSLETGELVQTIPLPNIR 269 (275)
T ss_pred EEEECCEEEEEC-CCEEEEEECcCCcEEEEEECCCEE
Confidence 223445655544 466999999999887766555443
No 335
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.99 E-value=0.0017 Score=68.60 Aligned_cols=193 Identities=16% Similarity=0.293 Sum_probs=115.9
Q ss_pred EecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCC-CCCeEEEEEeCCCCEEEEEECCCcEEEEECC
Q 003459 54 SLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGH-RSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (818)
Q Consensus 54 ~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~~l~~h-~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~ 131 (818)
.+.+-...+.+++|+|+.. ++++....+.|..++. +|+.++.+.-. .+..-.|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4555566799999999755 6667777888888886 58888877533 3567889998777777766668999999884
Q ss_pred CCe------EEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEEEEEe--------cCCCCEE
Q 003459 132 KKG------CIHTYK-----GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA---GKLLHDFK--------CHEGQIQ 189 (818)
Q Consensus 132 ~~~------~i~~l~-----~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t---~~~i~~~~--------~h~~~I~ 189 (818)
... ....+. .++..+..++|.+.++.|+++-+..-..+|.+.. ...+.... .....+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 112222 2455689999999888888887776656665543 22221111 1234578
Q ss_pred EEEEeCC-CCEEEEEeCCCeEEEEECCCCeEEEEeCCCC---------CCeeEEEEeCCCCEEEEEECC
Q 003459 190 CIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPET---------SGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 190 sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~---------~~I~sl~fspdg~~Lasgs~d 248 (818)
++.++|. +.+++.+.....|..+| .+|+.+..+.-.. ...-.|+|.++|++.+++-.+
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpN 242 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPN 242 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTT
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCc
Confidence 9999996 67888888889999999 6677666543222 246889999999877776444
No 336
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0095 Score=67.37 Aligned_cols=241 Identities=15% Similarity=0.175 Sum_probs=162.0
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE-ecCCCCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDSVSFDSSEVLVAA-GAASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~-l~~h~~~V~~l~fspdg~~Las-gs~DG~I~IWDl~t~~~v~ 95 (818)
....+.+.+++....++-.....+...+.. ...... ...-...-.+++.++.+..++. ...++.|.+.|..+.+...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 445667777555555555444455555544 222222 1111133457788888875444 4446899999988887777
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEEC---CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEE
Q 003459 96 TLTGHRSNCISVDFHPFGEFFASGSL---DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWD 171 (818)
Q Consensus 96 ~l~~h~~~V~sv~fspdg~~Lasgs~---Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~IwD 171 (818)
....-. ....++|.++++++.++.. ++.+.+.|..+.+.+.....-..+ ..+++.|+|..++.+. .++.|.++|
T Consensus 111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~ 188 (381)
T COG3391 111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVID 188 (381)
T ss_pred Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEe
Confidence 665322 5678999999988777766 689999999988888875544444 8899999999777665 688999999
Q ss_pred CCCCeEEE-E----EecCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEEeCCCCC-CeeEEEEeCCCCEE
Q 003459 172 LTAGKLLH-D----FKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGPETS-GVRCLTFNPDGRTL 242 (818)
Q Consensus 172 l~t~~~i~-~----~~~h~~~I~sv~fspdg~~Lasgs~D---g~I~IwDl~t~~~i~~~~~~~~-~I~sl~fspdg~~L 242 (818)
........ . ... ...-..+.+.|+|.++...... +.+...|..++........... ....+.++|+|.++
T Consensus 189 ~~~~~v~~~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~ 267 (381)
T COG3391 189 TSGNSVVRGSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAA 267 (381)
T ss_pred CCCcceecccccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEE
Confidence 77665553 1 221 2234678899999866665544 5999999999887766222222 56788999999999
Q ss_pred EEEECC--CEEEEEecCCceec
Q 003459 243 LCGLHE--SLKVFSWEPIRCHD 262 (818)
Q Consensus 243 asgs~d--~I~Vwd~~~~~~~~ 262 (818)
.+.... .+.+.|........
T Consensus 268 yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 268 YVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred EEEecCCCeEEEEeCCCCceee
Confidence 887443 46666666554433
No 337
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.95 E-value=2.7e-06 Score=96.15 Aligned_cols=198 Identities=17% Similarity=0.296 Sum_probs=132.4
Q ss_pred CCCEEEEEEeeCCC-cEEEEEeCCCeEEEEECCCCce--EEEecCCCCCeEEEEEcC-CCCEEEEEE----CCCeEEEEE
Q 003459 16 SSTVNCLKIGRKSS-RVLVTGGEDHKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDS-SEVLVAAGA----ASGTIKLWD 87 (818)
Q Consensus 16 ~~~V~~lafsp~~~-~lLatgs~Dg~V~lWdl~~~~~--i~~l~~h~~~V~~l~fsp-dg~~Lasgs----~DG~I~IWD 87 (818)
..-+.|+++..+.. .+++.|..+|.|.+-.+....- -....+|....++++|++ |.+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34578888776444 5789999999999988754322 234567888999999987 556677663 256799999
Q ss_pred CCCC--eEE--EEEcC-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 003459 88 LEEA--KIV--RTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSG 161 (818)
Q Consensus 88 l~t~--~~v--~~l~~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp-dg~~L~sg 161 (818)
+.++ .+. ..|.+ ......+++|..+.+.+++|.....++++|++... .....-.+..+..+...| .++++++-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhhhhhhcccceecCCCCCceecc
Confidence 9876 221 12222 33445689999888999999999999999998432 111111234466677788 67777765
Q ss_pred ECCCeEEEEE-CCCCe-EEEEEec----CCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECC
Q 003459 162 GEDNTVKLWD-LTAGK-LLHDFKC----HEGQIQCIDFHPH--EFLLATGSADRTVKFWDLE 215 (818)
Q Consensus 162 s~Dg~I~IwD-l~t~~-~i~~~~~----h~~~I~sv~fspd--g~~Lasgs~Dg~I~IwDl~ 215 (818)
. ||.|.+|| .+.-+ ++..+.. ....+..++|+|. |.+.+..-..++|++||+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 4 99999999 33322 2222211 1234899999995 4344444456799999986
No 338
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.95 E-value=0.0029 Score=70.72 Aligned_cols=245 Identities=13% Similarity=0.122 Sum_probs=136.9
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC----------------
Q 003459 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR---------------- 101 (818)
Q Consensus 38 Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~---------------- 101 (818)
.+.+.+||+.+++...... ....+....|+|+|+.++... ++.|.+++..++...+.-....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP-PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEETTTTEEEESS--EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred ceeEEEEecCCCceEECcC-CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 4679999998865544333 356789999999999998875 6889999998885554322111
Q ss_pred -CCeEEEEEeCCCCEEEEEECC-C-----------------------------------cEEEEECCCCeEEE-E-E---
Q 003459 102 -SNCISVDFHPFGEFFASGSLD-T-----------------------------------NLKIWDIRKKGCIH-T-Y--- 139 (818)
Q Consensus 102 -~~V~sv~fspdg~~Lasgs~D-g-----------------------------------~I~IwDl~~~~~i~-~-l--- 139 (818)
+.-..+.|+||+++|+....| . .+.++|+.+++... . .
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 122568899999998876543 1 13344444443211 1 1
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEE--CC---CeEEEEECCCCeEEEEEec-CCCCE---EEEEEe-CC-CCEEEEEeCCCe
Q 003459 140 KGHTRGVNAIRFTPDGRWVVSGG--ED---NTVKLWDLTAGKLLHDFKC-HEGQI---QCIDFH-PH-EFLLATGSADRT 208 (818)
Q Consensus 140 ~~h~~~V~~l~fspdg~~L~sgs--~D---g~I~IwDl~t~~~i~~~~~-h~~~I---~sv~fs-pd-g~~Lasgs~Dg~ 208 (818)
......+..+.|.++++.|+..- .+ ..+.++|..++.....+.. ..+.| ....|. ++ +.+|.....+|.
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 12234577889999888444332 22 2467788877654333322 22222 345554 55 445556667774
Q ss_pred --EEEEECCCCeEEEEeCCCCCCeeE-EEEeCCCCEEE-EEECC---CEEEEEecCC--ceeccccccccc-eeeeeecC
Q 003459 209 --VKFWDLETFELIGSAGPETSGVRC-LTFNPDGRTLL-CGLHE---SLKVFSWEPI--RCHDAVDVGWSR-LSDLNVHE 278 (818)
Q Consensus 209 --I~IwDl~t~~~i~~~~~~~~~I~s-l~fspdg~~La-sgs~d---~I~Vwd~~~~--~~~~~~~~~~~~-v~~l~~~~ 278 (818)
|.+++...+... .+....-.|.. +.|++++..|+ ++..+ .-.||.++.. .....+...... ......++
T Consensus 260 ~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd 338 (353)
T PF00930_consen 260 RHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD 338 (353)
T ss_dssp EEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT
T ss_pred cEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC
Confidence 556666666643 45444556744 67888887776 44332 3455555433 222222222222 23444577
Q ss_pred CCEEEEE
Q 003459 279 GKLLGCS 285 (818)
Q Consensus 279 g~lLatg 285 (818)
|++++..
T Consensus 339 g~y~v~~ 345 (353)
T PF00930_consen 339 GKYYVDT 345 (353)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 7776643
No 339
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.004 Score=70.41 Aligned_cols=216 Identities=16% Similarity=0.172 Sum_probs=157.1
Q ss_pred EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCeEEEE
Q 003459 20 NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 20 ~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~t~~~v~~ 96 (818)
.++++++.+.+.+++...++.|.+.|..+.........-. ....++|+++++.++++.. ++++.+.|-.+++....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 4677888777788888888999999987777776665322 5678999999988777765 68999999999998888
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCCeEEE-----EEecCCCCeEEEEEcCCCCEEEEEECC---CeE
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIH-----TYKGHTRGVNAIRFTPDGRWVVSGGED---NTV 167 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~~~i~-----~l~~h~~~V~~l~fspdg~~L~sgs~D---g~I 167 (818)
...-..+ ..+++.|+|..++... .++.|.+.|........ .+..+ ..-..+.+.|+|.++++.... +.+
T Consensus 156 ~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 156 IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECCCCCEEEEEeccCCCceE
Confidence 6544444 8899999999766665 68899999977665553 12222 234578999999977776554 489
Q ss_pred EEEECCCCeEEEEEecCCC-CEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCeEEEEeCCCCC---CeeEEEEeCC
Q 003459 168 KLWDLTAGKLLHDFKCHEG-QIQCIDFHPHEFLLATGSA-DRTVKFWDLETFELIGSAGPETS---GVRCLTFNPD 238 (818)
Q Consensus 168 ~IwDl~t~~~i~~~~~h~~-~I~sv~fspdg~~Lasgs~-Dg~I~IwDl~t~~~i~~~~~~~~---~I~sl~fspd 238 (818)
...|..++.....-..-.. ....+.++|+|.++.+... .+.+.+.|..+............ .+..+++.+.
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 9999998877665221111 4567889999998888754 48999999998887766543322 3455555543
No 340
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.94 E-value=0.012 Score=67.47 Aligned_cols=113 Identities=19% Similarity=0.214 Sum_probs=80.2
Q ss_pred eEEEEEeCCC-CEEEEE----ECCCc----EEEEECCCCeEEE--E-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 104 CISVDFHPFG-EFFASG----SLDTN----LKIWDIRKKGCIH--T-YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 104 V~sv~fspdg-~~Lasg----s~Dg~----I~IwDl~~~~~i~--~-l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
..++.|+-.. ..+.+. +.+|. -.+|++...+... . --.....|.+++++|+...|+.|+.||.|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 3566776533 334432 22342 3466665443211 1 124677899999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 003459 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (818)
Q Consensus 172 l~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~ 218 (818)
...+... +....-..+.++|||+|.++++|+..|.+.+||+.-..
T Consensus 288 ~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 288 TTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred cCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 8776332 22334567899999999999999999999999987543
No 341
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.00099 Score=75.95 Aligned_cols=196 Identities=15% Similarity=0.174 Sum_probs=122.9
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCC---CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCC
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGED---HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASG 81 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~D---g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG 81 (818)
.+..+.+..-...+..-+|+|++..+.+..-.. ..+.++++.+++....+. ..+.-..-+|+|||+.|+.. ..||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 344445555556677788999766644443222 459999998776555444 23333457899999877654 4455
Q ss_pred e--EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC---cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003459 82 T--IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT---NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (818)
Q Consensus 82 ~--I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg---~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~ 156 (818)
. |++.|+..+...+ +....+.-..=.|+|+|++++..+..+ .|+++|.+.+.. ..+......-..-.|+|||+
T Consensus 261 ~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence 4 6666777766443 543333334667999999888776533 677788776654 33433333333788999999
Q ss_pred EEEEEECC-Ce--EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC
Q 003459 157 WVVSGGED-NT--VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA 205 (818)
Q Consensus 157 ~L~sgs~D-g~--I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~ 205 (818)
+|+..+.. |. |.+.|+.++..+..+. .......-.|.++|..+...+.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 99987743 44 6777776665444333 3334445677788877665543
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.83 E-value=0.00089 Score=76.33 Aligned_cols=194 Identities=18% Similarity=0.165 Sum_probs=122.9
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEE---ECC-CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCC
Q 003459 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAG---AAS-GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDT 123 (818)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~~Lasg---s~D-G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg 123 (818)
+.....+..-...+..-+|++++..++.. ... ..+.++|+.+++....+. ..+.-..-.|+|||++|+... .||
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCC
Confidence 44445555455667778899988765443 222 469999999887655554 233334578999999766554 455
Q ss_pred --cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCC
Q 003459 124 --NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF 198 (818)
Q Consensus 124 --~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~ 198 (818)
.|+++|+..+. ...+....+.-..-.|+|||++++..+.. | .|.++|+..+.. ..+....+.-..-.|+|+|.
T Consensus 261 ~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~ 338 (425)
T COG0823 261 SPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGD 338 (425)
T ss_pred CccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCC
Confidence 57777887766 33344333333466799999999877654 3 477788776554 33333333333778999999
Q ss_pred EEEEEeCC-Ce--EEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 199 LLATGSAD-RT--VKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 199 ~Lasgs~D-g~--I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
+|+..+.. |. |.+.|+.++..+..+ ........-.|.++|+.+...+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEec
Confidence 99887743 44 666676655532222 2223334557888888877543
No 343
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.82 E-value=0.0072 Score=69.28 Aligned_cols=175 Identities=16% Similarity=0.198 Sum_probs=100.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEE
Q 003459 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (818)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~ 137 (818)
.......+.++|+|+++++ +.+|...|+.......... +.....+|.+ ...+|+-...+.|.|+.--+.....
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEec-CccEEEEECCCeEEEEEcCccccce
Confidence 4445789999999999988 4588888888554444332 2345688988 4457777778899997322222222
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-
Q 003459 138 TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET- 216 (818)
Q Consensus 138 ~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t- 216 (818)
.++. ...+..+-. |..|+..+.+ .|.+||+.+++.+..+.. .+|..+.|+++|.+++..+.+ .+.|++...
T Consensus 104 ~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 104 SIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred EEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 3332 122444433 7777776544 899999999999999874 348999999999999999855 567765443
Q ss_pred -------------CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEE
Q 003459 217 -------------FELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKV 252 (818)
Q Consensus 217 -------------~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~V 252 (818)
...+..+ ...|.+.+|..| .++-.+.+.++-
T Consensus 176 ~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~~lkY 219 (443)
T PF04053_consen 176 AVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSNHLKY 219 (443)
T ss_dssp HHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TTEEEE
T ss_pred hcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCCeEEE
Confidence 3444443 456899999876 444343445544
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.82 E-value=0.00016 Score=83.13 Aligned_cols=195 Identities=16% Similarity=0.280 Sum_probs=122.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE
Q 003459 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI 136 (818)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~-~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i 136 (818)
|...|.--+++..+++++.|+.-|.+++|+-..++....-. +..+.+..+..+++..++|+|+..|.|.++-+.....-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44556666777889999999999999999977665443322 34455667778888889999999999999987653221
Q ss_pred -----EEE-ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEecCCCCEEEEEEeCCCCEEEEEeCC
Q 003459 137 -----HTY-KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (818)
Q Consensus 137 -----~~l-~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~----~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D 206 (818)
... +.|...|++++|++++..+++|...|.|.+-.+... ...+.+-...+.|-.+.+. ++.+|++...
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~- 189 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT- 189 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh-
Confidence 111 247788999999999999999999999998887762 1112222235667666654 3334443332
Q ss_pred CeEEEEECCCCe--EEEEeCCCCCCeeEEEEeCC-----CCEEEEEECCCEEEEEec
Q 003459 207 RTVKFWDLETFE--LIGSAGPETSGVRCLTFNPD-----GRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 207 g~I~IwDl~t~~--~i~~~~~~~~~I~sl~fspd-----g~~Lasgs~d~I~Vwd~~ 256 (818)
. ..+++++..+ .+..-.-....-...+|-|. ...|+++ .-+.++|..+
T Consensus 190 r-~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-RPG~RlWead 244 (726)
T KOG3621|consen 190 R-CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-RPGLRLWEAD 244 (726)
T ss_pred h-hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-cCCCceEEee
Confidence 2 2344444322 22221111111234445443 2344444 4566899765
No 345
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.80 E-value=0.014 Score=62.53 Aligned_cols=223 Identities=15% Similarity=0.145 Sum_probs=132.8
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE----------
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL---------- 97 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l---------- 97 (818)
.++.|+.|..+| +.+|+.........+. +...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 456788899988 9999983333333222 233499999998877776654 599999998764433310
Q ss_pred ----cCCCCCeEEEE--EeCCCC-EEEEEECCCcEEEEECCCC-----eEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 98 ----TGHRSNCISVD--FHPFGE-FFASGSLDTNLKIWDIRKK-----GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (818)
Q Consensus 98 ----~~h~~~V~sv~--fspdg~-~Lasgs~Dg~I~IwDl~~~-----~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg 165 (818)
......+..++ -...+. +|+++ ....|.+|..... +..+.+. -...+..++|. ++.++.|..++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc
Confidence 11223344444 112333 44444 4558888877653 3445554 34678999998 56788877554
Q ss_pred eEEEEECCCCeEEEEEecC------------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE--EeCCCCCCee
Q 003459 166 TVKLWDLTAGKLLHDFKCH------------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG--SAGPETSGVR 231 (818)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h------------~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~--~~~~~~~~I~ 231 (818)
..+.|+.++.....+... ..++..+.. +++.+|++. |..-.+.|.. |+... .+.- ...+.
T Consensus 159 -f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W-~~~p~ 232 (275)
T PF00780_consen 159 -FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQW-SSAPQ 232 (275)
T ss_pred -eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC-CCcCcccEEEc-CCchh
Confidence 688899877654433211 122333333 445566543 3444444543 43322 1211 23455
Q ss_pred EEEEeCCCCEEEEEECCCEEEEEecCCceecccc
Q 003459 232 CLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVD 265 (818)
Q Consensus 232 sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~ 265 (818)
++++. ..||++-..+.|.||++.+++..+.+.
T Consensus 233 ~~~~~--~pyli~~~~~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSSNSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEE--CCEEEEECCCEEEEEECcCCcEEEEEE
Confidence 66664 458888888899999999988766654
No 346
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.0091 Score=65.17 Aligned_cols=221 Identities=15% Similarity=0.125 Sum_probs=139.2
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC-
Q 003459 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG- 99 (818)
Q Consensus 21 ~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~- 99 (818)
+-.|.++.+.++.+--..+.|.-|+..+++.. .+. +...+.++..-..+..|+++ .. -+.+++.+++..+..+..
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~-~~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIAC-EH-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEE-cc-ccEEEeccCCceeEEeccc
Confidence 34567766667777777888999988755432 222 22333444443344444443 23 367788776665333321
Q ss_pred ---C-CCCeEEEEEeCCCCEEEEEEC-----------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003459 100 ---H-RSNCISVDFHPFGEFFASGSL-----------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 100 ---h-~~~V~sv~fspdg~~Lasgs~-----------Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D 164 (818)
. ....+.+...|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+...
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 1 134567888888876555433 134555554 466666666656667789999999988887665
Q ss_pred -CeEEEEECCC--C----e-EEEEEecCCCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCeEEEEeCCCCCCeeEEEE
Q 003459 165 -NTVKLWDLTA--G----K-LLHDFKCHEGQIQCIDFHPHEFLLATGSADR-TVKFWDLETFELIGSAGPETSGVRCLTF 235 (818)
Q Consensus 165 -g~I~IwDl~t--~----~-~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg-~I~IwDl~t~~~i~~~~~~~~~I~sl~f 235 (818)
+.|.-|++.. + + ....+....+..-.++...+|.+.+++..+| .|.+|+.+ ++++..+......+++++|
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 7788887752 1 1 1122222345566777888888876555554 89999998 9999888877677888888
Q ss_pred e-CCCCEEEEEEC
Q 003459 236 N-PDGRTLLCGLH 247 (818)
Q Consensus 236 s-pdg~~Lasgs~ 247 (818)
- ++.+.|++.+.
T Consensus 263 gG~~~~~L~iTs~ 275 (307)
T COG3386 263 GGPDLNTLYITSA 275 (307)
T ss_pred eCCCcCEEEEEec
Confidence 5 34566665443
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.75 E-value=0.023 Score=64.93 Aligned_cols=205 Identities=13% Similarity=0.135 Sum_probs=115.9
Q ss_pred eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-------cCCCCCeEEEEEeCC
Q 003459 40 KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL-------TGHRSNCISVDFHPF 112 (818)
Q Consensus 40 ~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l-------~~h~~~V~sv~fspd 112 (818)
.|.||+. .|+.+..+.-..+.|.++.|+.+..++ +...||.++++|+.. +....+ .-....+....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCC
Confidence 4888885 566676655444899999999876665 556899999999863 331111 111122222233334
Q ss_pred CCEEEEEECCCcEEEEECCCCe-EEEEEe---c-----CCC-CeE-EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 113 GEFFASGSLDTNLKIWDIRKKG-CIHTYK---G-----HTR-GVN-AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF 181 (818)
Q Consensus 113 g~~Lasgs~Dg~I~IwDl~~~~-~i~~l~---~-----h~~-~V~-~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~ 181 (818)
| ++.-..++.+++..--... ....+. . +.. ... ...++.+....+....++.+.+.+-...+. +
T Consensus 139 G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 139 G--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred C--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 4 3333345555544322211 111111 0 000 000 023444555555555556666444332211 2
Q ss_pred ecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECCCEEEEE
Q 003459 182 KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (818)
Q Consensus 182 ~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~-~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (818)
. ..+++..|+++|++++||.-..+|.+.+++..-.+.+..+... ......+.|.-+... +....+.+.++.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav-~l~~~~~l~lvg 285 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV-VLSWEDELLLVG 285 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE-EEEeCCEEEEEC
Confidence 2 2468999999999999999999999999987666666555443 456688888866433 333345555544
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.0019 Score=74.71 Aligned_cols=134 Identities=18% Similarity=0.199 Sum_probs=94.7
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-----EEE-cCC
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV-----RTL-TGH 100 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v-----~~l-~~h 100 (818)
.+.+++.|+.-|.+++|+-..++....-. +-.+.+..+..+++..++|.|+..|.|.++-+..+..- ... ..|
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~ 123 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH 123 (726)
T ss_pred CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence 56789999999999999976665443322 34455666677889999999999999999987654321 111 237
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe----EEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003459 101 RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG----CIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 101 ~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~----~i~~l~~h~~~V~~l~fspdg~~L~sgs 162 (818)
...|++++|++++..|++|...|.|..-.+.... ..+.+-...+.|..+.+. ++..|++..
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl 188 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL 188 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence 7899999999999999999999999988877621 122222345667777665 344444433
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.73 E-value=0.0022 Score=73.22 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=82.7
Q ss_pred CCEEEEEEeeCCCcEEEEE----eCCCe----EEEEECCCCce--EEEe-cCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 17 STVNCLKIGRKSSRVLVTG----GEDHK----VNLWAIGKPNA--ILSL-SGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatg----s~Dg~----V~lWdl~~~~~--i~~l-~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
....++.|+-...+.+.|. +.+|. -.+|++..++. +... -.....|.|++++|++..|+.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 4456777876555555554 22343 34566644332 1111 146788999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK 133 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~ 133 (818)
||...+... +....-....++|||+|..|++|+..|.|.+||+.-.
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 998766433 2234456789999999999999999999999998643
No 350
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.73 E-value=0.033 Score=63.55 Aligned_cols=241 Identities=15% Similarity=0.151 Sum_probs=132.9
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC-----------cE
Q 003459 62 IDSVSFDSSEVLVAAG-AASG----TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT-----------NL 125 (818)
Q Consensus 62 V~~l~fspdg~~Lasg-s~DG----~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg-----------~I 125 (818)
+....++|+++++|.+ +..| .|+++|+++|+.+...-.. .....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467889999988876 3334 5999999999876533111 1122399999988776665433 37
Q ss_pred EEEECCCCeE--EEEEecCCCC--eEEEEEcCCCCEEEEEECC----CeEEEEECCCC----eEEEEEecCCCCEEEEEE
Q 003459 126 KIWDIRKKGC--IHTYKGHTRG--VNAIRFTPDGRWVVSGGED----NTVKLWDLTAG----KLLHDFKCHEGQIQCIDF 193 (818)
Q Consensus 126 ~IwDl~~~~~--i~~l~~h~~~--V~~l~fspdg~~L~sgs~D----g~I~IwDl~t~----~~i~~~~~h~~~I~sv~f 193 (818)
+.|.+.+... ...+...... ...+..++|+++|+..... ..+++.|+..+ .....+..+...+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888876532 2344433322 5688899999998765432 35888898875 233333333344433333
Q ss_pred eCCCCEEEEEe---CCCeEEEEECCCCe---EEEEeCCCCC--CeeEEEEeCCCCEEEE-EECC---CEEEEEec-CCce
Q 003459 194 HPHEFLLATGS---ADRTVKFWDLETFE---LIGSAGPETS--GVRCLTFNPDGRTLLC-GLHE---SLKVFSWE-PIRC 260 (818)
Q Consensus 194 spdg~~Lasgs---~Dg~I~IwDl~t~~---~i~~~~~~~~--~I~sl~fspdg~~Las-gs~d---~I~Vwd~~-~~~~ 260 (818)
+.++.+++... .++.|.-.++.... ....+..+.. .+..+.. .+.+|+. ...+ .|++|++. ....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEE
Confidence 33554554443 24577778887765 2223334444 3455544 3445554 3344 38888888 4333
Q ss_pred eccccccccceeeeee-cCCCEEEEEEc----CCeEEEEEecCCCceeee
Q 003459 261 HDAVDVGWSRLSDLNV-HEGKLLGCSYN----QSCVGVWVVDISRIEPYT 305 (818)
Q Consensus 261 ~~~~~~~~~~v~~l~~-~~g~lLatg~~----Dg~V~IWdvd~~~~~~~~ 305 (818)
..........+..+.. .++..+..... -+++..||+.+++...+.
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 3322222232333332 33333332222 367888888888877653
No 351
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.70 E-value=0.024 Score=64.62 Aligned_cols=223 Identities=11% Similarity=0.120 Sum_probs=123.5
Q ss_pred EEEEEEeeCCCcEEEEEeCCC----eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC-----------eE
Q 003459 19 VNCLKIGRKSSRVLVTGGEDH----KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG-----------TI 83 (818)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg----~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG-----------~I 83 (818)
+..++++|++..++++-+..| .++++|+.+++.+...-... ....+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 346788996655555545555 49999999997765332111 123499999988776665433 37
Q ss_pred EEEECCCCeE--EEEEcCCCCC--eEEEEEeCCCCEEEEEECC----CcEEEEECCCC----eEEEEEecCCCCeE-EEE
Q 003459 84 KLWDLEEAKI--VRTLTGHRSN--CISVDFHPFGEFFASGSLD----TNLKIWDIRKK----GCIHTYKGHTRGVN-AIR 150 (818)
Q Consensus 84 ~IWDl~t~~~--v~~l~~h~~~--V~sv~fspdg~~Lasgs~D----g~I~IwDl~~~----~~i~~l~~h~~~V~-~l~ 150 (818)
+.|.+.+... ...+...... ...+..++++++|+..... ..+++.|+..+ .....+......+. .+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 8888876532 2444433322 6688899999987754432 35888898874 23333333333343 343
Q ss_pred EcCCCCEEEEEEC---CCeEEEEECCCCeE---EEEEecCCCC--EEEEEEeCCCCEEEEEeCCC--eEEEEECC-CCeE
Q 003459 151 FTPDGRWVVSGGE---DNTVKLWDLTAGKL---LHDFKCHEGQ--IQCIDFHPHEFLLATGSADR--TVKFWDLE-TFEL 219 (818)
Q Consensus 151 fspdg~~L~sgs~---Dg~I~IwDl~t~~~---i~~~~~h~~~--I~sv~fspdg~~Lasgs~Dg--~I~IwDl~-t~~~ 219 (818)
.. .+.+++.... .+.|...++..... ...+-.+... +..+... .+.+++....++ .|++||+. ....
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~Lvl~~~~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF-KDYLVLSYRENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE-TTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE-CCEEEEEEEECCccEEEEEECCCCcEE
Confidence 33 3444443322 35777888877652 2244445443 4444432 233444444454 68999999 5544
Q ss_pred EEEeCCCCCCeeEEEEeCCCCEEEE
Q 003459 220 IGSAGPETSGVRCLTFNPDGRTLLC 244 (818)
Q Consensus 220 i~~~~~~~~~I~sl~fspdg~~Las 244 (818)
........+.|..+...+++..+..
T Consensus 363 ~~~~~p~~g~v~~~~~~~~~~~~~~ 387 (414)
T PF02897_consen 363 REIPLPEAGSVSGVSGDFDSDELRF 387 (414)
T ss_dssp EEEESSSSSEEEEEES-TT-SEEEE
T ss_pred eeecCCcceEEeccCCCCCCCEEEE
Confidence 4444444555666666666666553
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.64 E-value=0.065 Score=58.54 Aligned_cols=265 Identities=11% Similarity=0.081 Sum_probs=155.5
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEEEEEcCC---CC---
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWDLEEAKIVRTLTGH---RS--- 102 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWDl~t~~~v~~l~~h---~~--- 102 (818)
++++++|..+++.+-.+.. +..-.+..+|+++.++++. ..-.|.+||..+-.....+.-. ..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999988887776653 3344577899999888743 2457999999998877755311 11
Q ss_pred -CeEEEEEeCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEE
Q 003459 103 -NCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT-AGKLL 178 (818)
Q Consensus 103 -~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~-t~~~i 178 (818)
....++++.+|+++++... ...|.+.|+..++.+..+.... +..+-=+ ..+.|.+-|.||.+.-..+. .|+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEec-CCCceEEEecCCceEEEEECCCCCEe
Confidence 2234678889998777543 4579999999999888876322 2222112 23457888899999988887 46554
Q ss_pred EEEe----cCCCC-EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE--EEeCCC----------CCCeeEEEEeCCCCE
Q 003459 179 HDFK----CHEGQ-IQCIDFHPHEFLLATGSADRTVKFWDLETFELI--GSAGPE----------TSGVRCLTFNPDGRT 241 (818)
Q Consensus 179 ~~~~----~h~~~-I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i--~~~~~~----------~~~I~sl~fspdg~~ 241 (818)
.... ....+ +..-.+...+..++.-+.+|.|+-.|+...... ..+... .++-.-+++++....
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 3221 11122 223344455556666788999999988765422 122110 123455788877666
Q ss_pred EEEEEC----C-----CEEEE--EecCCceeccccccccceeeee-ecC-CCEEEE-EEcCCeEEEEEecCCCceeeeec
Q 003459 242 LLCGLH----E-----SLKVF--SWEPIRCHDAVDVGWSRLSDLN-VHE-GKLLGC-SYNQSCVGVWVVDISRIEPYTIG 307 (818)
Q Consensus 242 Lasgs~----d-----~I~Vw--d~~~~~~~~~~~~~~~~v~~l~-~~~-g~lLat-g~~Dg~V~IWdvd~~~~~~~~~~ 307 (818)
|++-.+ + +-.|| |..+.+....+..... +..+. ..+ ..+|.+ ...++.+.+||..+++...-..+
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 665321 1 24455 4455555555554332 22333 333 345544 44689999999999987765544
Q ss_pred cc
Q 003459 308 SV 309 (818)
Q Consensus 308 ~~ 309 (818)
.+
T Consensus 331 lG 332 (342)
T PF06433_consen 331 LG 332 (342)
T ss_dssp -S
T ss_pred cC
Confidence 33
No 353
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.61 E-value=0.065 Score=59.55 Aligned_cols=262 Identities=13% Similarity=0.102 Sum_probs=129.7
Q ss_pred ECCCCceEEEecCCCCC-----eEEEEEcCCCCEEEEEEC-C--CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEE
Q 003459 45 AIGKPNAILSLSGHTSG-----IDSVSFDSSEVLVAAGAA-S--GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF 116 (818)
Q Consensus 45 dl~~~~~i~~l~~h~~~-----V~~l~fspdg~~Lasgs~-D--G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~L 116 (818)
|..+|..+..+..+... .+.=+|.++|+.|+.++. + ..+.+.|+.+++..+.-.+.........++++++.+
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 55677777766643332 223356778876655544 4 467788999998877665433434456778888887
Q ss_pred EEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEc--CCCCEEEEEEC----------------------CCeEEEEEC
Q 003459 117 ASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFT--PDGRWVVSGGE----------------------DNTVKLWDL 172 (818)
Q Consensus 117 asgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fs--pdg~~L~sgs~----------------------Dg~I~IwDl 172 (818)
+-......|+-.|+.+++....+......+-...|. .|+..++-.-. ...|...|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 766666789999999988766676666655555664 35665443211 246777888
Q ss_pred CCCeEEEEEecCCCCEEEEEEeCCCC-EEEEEeC------CCeEEEEECCCCeEEEEeCCCC--CCeeEEEEeCCCCEEE
Q 003459 173 TAGKLLHDFKCHEGQIQCIDFHPHEF-LLATGSA------DRTVKFWDLETFELIGSAGPET--SGVRCLTFNPDGRTLL 243 (818)
Q Consensus 173 ~t~~~i~~~~~h~~~I~sv~fspdg~-~Lasgs~------Dg~I~IwDl~t~~~i~~~~~~~--~~I~sl~fspdg~~La 243 (818)
.+|+....+. ....+..+.|+|... +|+.|.+ |..|.+.+.. +.....+..+. ..+..=-|.+||..|.
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCCCCcccccccccCCCCEEE
Confidence 8887665555 466788999999754 4444432 2234444543 33333333332 2233445899998876
Q ss_pred E-E-ECCC----EEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCC----------------eEEEEEecCCCc
Q 003459 244 C-G-LHES----LKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQS----------------CVGVWVVDISRI 301 (818)
Q Consensus 244 s-g-s~d~----I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg----------------~V~IWdvd~~~~ 301 (818)
. + ..++ |.-++.++..........++ ......++|++++.=+.|. .|+++++..++.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~-~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMPWC-SHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE-SE-EEEEE-TTSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCCce-eeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 4 2 2232 33344444444333344442 2333447888887544442 556677777776
Q ss_pred eeeeeccc
Q 003459 302 EPYTIGSV 309 (818)
Q Consensus 302 ~~~~~~~~ 309 (818)
..+..+..
T Consensus 333 ~~l~~h~~ 340 (386)
T PF14583_consen 333 RKLARHDT 340 (386)
T ss_dssp EEEEE---
T ss_pred eeeeeccC
Confidence 66665543
No 354
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00022 Score=82.96 Aligned_cols=190 Identities=14% Similarity=0.166 Sum_probs=126.0
Q ss_pred EEEEEeCCCCEEEEEEC----CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003459 105 ISVDFHPFGEFFASGSL----DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD 180 (818)
Q Consensus 105 ~sv~fspdg~~Lasgs~----Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~ 180 (818)
+-..|+|...+|++++. .|.|.||- ++|++-.... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+.-..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 44679999999998864 57888885 4555433222 223356799999888888988899999999887776666
Q ss_pred EecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE--eCCC----CCCeeEEEEeCCCCEE------E-EEEC
Q 003459 181 FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS--AGPE----TSGVRCLTFNPDGRTL------L-CGLH 247 (818)
Q Consensus 181 ~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~--~~~~----~~~I~sl~fspdg~~L------a-sgs~ 247 (818)
...|..+|..+.|+++|..|+++..-|.|.+|.......+.. +-.| .-...|..+++++.-+ + +|.+
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 667999999999999999999999999999998763222211 1111 1223555667774322 2 3333
Q ss_pred CCEE-EEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 248 ESLK-VFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 248 d~I~-Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
..+. .|+|.+....... .-.-+++|..+..++.+|+|+--|-.....+.
T Consensus 177 ~alD~~fnwk~~~a~rs~-------~ksgv~~g~~F~~~~~~GtVyyvdq~g~~~~V 226 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSD-------EKSGVPKGTEFLFAGKSGTVYYVDQNGRQRTV 226 (1416)
T ss_pred hhhcccccCccchhhccc-------cccCCCCCcEEEEEcCCceEEEEcCCCcEEEE
Confidence 3444 6777643221111 11223778888888888888777655444433
No 355
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.57 E-value=0.058 Score=58.94 Aligned_cols=240 Identities=12% Similarity=0.128 Sum_probs=145.7
Q ss_pred EEEEeeCCCcEEEEE----------eCCCeEEEEECCCCceEEEecCCC-------CCeEEEEEcCCCCEEEEEEC--CC
Q 003459 21 CLKIGRKSSRVLVTG----------GEDHKVNLWAIGKPNAILSLSGHT-------SGIDSVSFDSSEVLVAAGAA--SG 81 (818)
Q Consensus 21 ~lafsp~~~~lLatg----------s~Dg~V~lWdl~~~~~i~~l~~h~-------~~V~~l~fspdg~~Lasgs~--DG 81 (818)
.+.++|++ +.++++ -..-.|.+||..+-.....+.-.. .....++++.+++++++... -.
T Consensus 40 ~~~~spdg-k~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~ 118 (342)
T PF06433_consen 40 NVALSPDG-KTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPAT 118 (342)
T ss_dssp EEEE-TTS-SEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSE
T ss_pred ceeECCCC-CEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCC
Confidence 35678844 444443 223469999998887766543211 12334678889998877543 46
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC-CCeEEEEEe----cCCCCe-EEEEEcCCC
Q 003459 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYK----GHTRGV-NAIRFTPDG 155 (818)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~-~~~~i~~l~----~h~~~V-~~l~fspdg 155 (818)
.|.|.|+..++.+..+.- ..|..+--.. ..-|.+-|.||.+.-..+. .|+...+.. ....++ ..-++...+
T Consensus 119 SVtVVDl~~~kvv~ei~~--PGC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~ 195 (342)
T PF06433_consen 119 SVTVVDLAAKKVVGEIDT--PGCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG 195 (342)
T ss_dssp EEEEEETTTTEEEEEEEG--TSEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT
T ss_pred eEEEEECCCCceeeeecC--CCEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC
Confidence 799999999999888762 2233332222 2468888899999998887 454443221 112222 233445555
Q ss_pred CEEEEEECCCeEEEEECCCCeEE--EEEec----------CCCCEEEEEEeCCCCEEEEEeC---CC-------eEEEEE
Q 003459 156 RWVVSGGEDNTVKLWDLTAGKLL--HDFKC----------HEGQIQCIDFHPHEFLLATGSA---DR-------TVKFWD 213 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i--~~~~~----------h~~~I~sv~fspdg~~Lasgs~---Dg-------~I~IwD 213 (818)
..++-.+.+|.|+-.|+...... ..+.. ..+...-+++++....|++.-. +| .|.+||
T Consensus 196 ~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D 275 (342)
T PF06433_consen 196 GRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYD 275 (342)
T ss_dssp TEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEE
T ss_pred CeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEE
Confidence 66666789999999998765422 22211 1133445778876544444221 11 599999
Q ss_pred CCCCeEEEEeCCCCCCeeEEEEeCCCC-EEEEEEC--CCEEEEEecCCceecccc
Q 003459 214 LETFELIGSAGPETSGVRCLTFNPDGR-TLLCGLH--ESLKVFSWEPIRCHDAVD 265 (818)
Q Consensus 214 l~t~~~i~~~~~~~~~I~sl~fspdg~-~Lasgs~--d~I~Vwd~~~~~~~~~~~ 265 (818)
+.+++.+..+... .++.+|..+.|.+ +|++.+. +.+.|||..+++....+.
T Consensus 276 ~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 276 LKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 9999999988643 4578999999877 4444333 359999999988766553
No 356
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.56 E-value=0.043 Score=64.70 Aligned_cols=236 Identities=14% Similarity=0.131 Sum_probs=141.1
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCC-eEEEEEcC---CCCEEEEEEC------CCeEEEEECCCCeEEEEEcCC
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSG-IDSVSFDS---SEVLVAAGAA------SGTIKLWDLEEAKIVRTLTGH 100 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~-V~~l~fsp---dg~~Lasgs~------DG~I~IWDl~t~~~v~~l~~h 100 (818)
.++.++.|+.|.-.|..+++.+......... -..+.-.| ++ .|+++.. +|.|..+|.++|+.+..+..-
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~ 200 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTV 200 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCc
Confidence 4667778999999999999998776531100 00111112 34 4555432 689999999999988775421
Q ss_pred CC-------------------------------CeE-EEEEeCCCCEEEEEECC-----C-----------cEEEEECCC
Q 003459 101 RS-------------------------------NCI-SVDFHPFGEFFASGSLD-----T-----------NLKIWDIRK 132 (818)
Q Consensus 101 ~~-------------------------------~V~-sv~fspdg~~Lasgs~D-----g-----------~I~IwDl~~ 132 (818)
.. .++ .+.+.+...+++.+..+ + .|.-.|+++
T Consensus 201 p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~T 280 (527)
T TIGR03075 201 PGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDT 280 (527)
T ss_pred CCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcccc
Confidence 11 111 23555655666665522 2 677889999
Q ss_pred CeEEEEEecCCCCeE---------EEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEEec------------CC-CC
Q 003459 133 KGCIHTYKGHTRGVN---------AIRFTPDGR---WVVSGGEDNTVKLWDLTAGKLLHDFKC------------HE-GQ 187 (818)
Q Consensus 133 ~~~i~~l~~h~~~V~---------~l~fspdg~---~L~sgs~Dg~I~IwDl~t~~~i~~~~~------------h~-~~ 187 (818)
++....|+.....+. -+.+..+|+ .++.+..+|.++++|.++|+.+...+. .. .+
T Consensus 281 G~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p 360 (527)
T TIGR03075 281 GKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRP 360 (527)
T ss_pred CCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCC
Confidence 999888874322222 222334666 778899999999999999988632100 00 00
Q ss_pred E----------------------------EEEEEeCCCCEEEEEeCC---------------------------------
Q 003459 188 I----------------------------QCIDFHPHEFLLATGSAD--------------------------------- 206 (818)
Q Consensus 188 I----------------------------~sv~fspdg~~Lasgs~D--------------------------------- 206 (818)
+ ..++++|+..+++....+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~ 440 (527)
T TIGR03075 361 IEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHM 440 (527)
T ss_pred ccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCc
Confidence 0 124555654444433322
Q ss_pred CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-CCCEEEEEecCCceeccccccc
Q 003459 207 RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-HESLKVFSWEPIRCHDAVDVGW 268 (818)
Q Consensus 207 g~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~~~~~~~~~~~~ 268 (818)
|.|.-||+.+++.+...........+.... .|.+++.+. ++.++.||.++++.+-.+..+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t-~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT-AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE-CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 457788888888877664332222222222 444666665 4568999999998876665543
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.55 E-value=0.022 Score=65.41 Aligned_cols=226 Identities=13% Similarity=0.106 Sum_probs=114.6
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
.+++....-....+.++| ++++++. +.||...||.......... +.-...+|...++ +|+-...++|.|+.-
T Consensus 25 ~k~lg~~~~~p~~ls~np-ngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNP-NGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKN 96 (443)
T ss_dssp -EEEEE-SS--SEEEE-T-TSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEET
T ss_pred eccCCCCCcCCeeEEECC-CCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEc
Confidence 345555566688999999 6676666 4568888888433333222 2234578888554 666666888999742
Q ss_pred CCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (818)
Q Consensus 89 ~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~ 168 (818)
-+......+.. ...+..+-. |..|+..+.+ .|.+||+.+++.+..+... +|..+.|+++|.+++..+.+ .+.
T Consensus 97 ~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 97 FKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp TEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred CccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEE
Confidence 22222223331 123444433 7777777654 7999999999999998743 38999999999999988755 667
Q ss_pred EEECCCC-----------eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003459 169 LWDLTAG-----------KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (818)
Q Consensus 169 IwDl~t~-----------~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fsp 237 (818)
|++.... .....+..-...|.+.+|..+ .++-.+.. .|+.+ -.|+. ..+.....++.=+.+.+
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~-~~i~~ld~~~yllgy~~ 242 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKYL--VNGET-GIIAHLDKPLYLLGYLP 242 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEE-EEEEE-SS--EEEEEET
T ss_pred EEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCc-ceEEEcCCceEEEEEEc
Confidence 7664432 022222222467888999876 33333333 66653 33332 12222234556666666
Q ss_pred CCCEEEEEECC-CEEEEEec
Q 003459 238 DGRTLLCGLHE-SLKVFSWE 256 (818)
Q Consensus 238 dg~~Lasgs~d-~I~Vwd~~ 256 (818)
+...+++...+ .+..+.++
T Consensus 243 ~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 243 KENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TTTEEEEE-TT--EEEEE--
T ss_pred cCCEEEEEECCCCEEEEEEC
Confidence 55555555333 45555444
No 358
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.48 E-value=0.09 Score=58.48 Aligned_cols=274 Identities=11% Similarity=0.079 Sum_probs=132.0
Q ss_pred EEeeCCCcEEEEEeCCCe--EEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCC
Q 003459 23 KIGRKSSRVLVTGGEDHK--VNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH 100 (818)
Q Consensus 23 afsp~~~~lLatgs~Dg~--V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h 100 (818)
+|.+++.++|+.+..||. +++.|+.+++..+-..+.........++++.+.++-......|+-.|+.+.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 345666677777776765 555577777766655543233335667788888766666678999999998876666655
Q ss_pred CCCeEEEEEe--CCCCEEEEEEC----------------------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003459 101 RSNCISVDFH--PFGEFFASGSL----------------------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (818)
Q Consensus 101 ~~~V~sv~fs--pdg~~Lasgs~----------------------Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~ 156 (818)
...+-...|. .++..++..-. ...|.-.|+.+++....+. -...+..+.|+|...
T Consensus 122 ~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp 200 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDP 200 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEE
T ss_pred cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCCCC
Confidence 5655556664 34444433211 1246666888777555554 456688999999554
Q ss_pred EEEEEECCC-----eEEEEECCC-CeEEEEEecCC--CCEEEEEEeCCCCEEEEEe-----CCCeEEEEECCCCeEEEEe
Q 003459 157 WVVSGGEDN-----TVKLWDLTA-GKLLHDFKCHE--GQIQCIDFHPHEFLLATGS-----ADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 157 ~L~sgs~Dg-----~I~IwDl~t-~~~i~~~~~h~--~~I~sv~fspdg~~Lasgs-----~Dg~I~IwDl~t~~~i~~~ 223 (818)
.++.=|..| .-+||-+++ +.....+..+. ..+..=-|.|+|..|.--+ .+..|.-+|+.+++.....
T Consensus 201 ~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~ 280 (386)
T PF14583_consen 201 TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM 280 (386)
T ss_dssp EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE
T ss_pred CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE
Confidence 444444332 124554432 33333333222 2344456889987665422 2446788888887654322
Q ss_pred CCCCCCeeEEEEeCCCCEEEEEECC-----------------CEEEEEecCCceecccc--cccc---------ceeeee
Q 003459 224 GPETSGVRCLTFNPDGRTLLCGLHE-----------------SLKVFSWEPIRCHDAVD--VGWS---------RLSDLN 275 (818)
Q Consensus 224 ~~~~~~I~sl~fspdg~~Lasgs~d-----------------~I~Vwd~~~~~~~~~~~--~~~~---------~v~~l~ 275 (818)
.. .+...+..++||++++.-+.+ -|.+++.+..+...... ..|. ....-+
T Consensus 281 ~~--p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~F 358 (386)
T PF14583_consen 281 EM--PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSF 358 (386)
T ss_dssp EE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE
T ss_pred eC--CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCcc
Confidence 21 233455667899988743222 13344554443321111 1111 122334
Q ss_pred ecCCCEEE-EEEcCCeEEEEEecCC
Q 003459 276 VHEGKLLG-CSYNQSCVGVWVVDIS 299 (818)
Q Consensus 276 ~~~g~lLa-tg~~Dg~V~IWdvd~~ 299 (818)
.+||+.++ .+...|...||-++..
T Consensus 359 SPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 359 SPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp -TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred CCCCCEEEEECCCCCCccEEEEeCc
Confidence 57887654 6667888888877654
No 359
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.48 E-value=0.017 Score=64.59 Aligned_cols=227 Identities=15% Similarity=0.164 Sum_probs=127.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEe-cCC----------------CCCeEEEEEcCCCCEEEEEE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL-SGH----------------TSGIDSVSFDSSEVLVAAGA 78 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l-~~h----------------~~~V~~l~fspdg~~Lasgs 78 (818)
...+....|+|+ ++.++... ++.|.+++..++...+.. .|. -+.-..+.|+||+++|+...
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 567888999995 55566554 578999998766443322 120 11235688999999888764
Q ss_pred CC-C-----------------------------------eEEEEECCCCeEEE--EE---cCCCCCeEEEEEeCCCCEEE
Q 003459 79 AS-G-----------------------------------TIKLWDLEEAKIVR--TL---TGHRSNCISVDFHPFGEFFA 117 (818)
Q Consensus 79 ~D-G-----------------------------------~I~IWDl~t~~~v~--~l---~~h~~~V~sv~fspdg~~La 117 (818)
.| . .+.++|+.+++... .. ......+..+.|.+++..|+
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~ 199 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLW 199 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEE
T ss_pred ECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEE
Confidence 43 1 23344554444321 11 12334577889999988444
Q ss_pred EEE--CC---CcEEEEECCCCeEEEEEec-CCC---CeEEEEEc-CCCC-EEEEEECCCe--EEEEECCCCeEEEEEecC
Q 003459 118 SGS--LD---TNLKIWDIRKKGCIHTYKG-HTR---GVNAIRFT-PDGR-WVVSGGEDNT--VKLWDLTAGKLLHDFKCH 184 (818)
Q Consensus 118 sgs--~D---g~I~IwDl~~~~~i~~l~~-h~~---~V~~l~fs-pdg~-~L~sgs~Dg~--I~IwDl~t~~~i~~~~~h 184 (818)
..- .+ ..+.++|..++.+...+.. ... ....+.|. +++. +|.....+|. |.+++...+. ...+...
T Consensus 200 ~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G 278 (353)
T PF00930_consen 200 VQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSG 278 (353)
T ss_dssp EEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-S
T ss_pred EEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccC
Confidence 433 22 2567778877655433322 112 22345554 5554 4445556664 6667776665 3355544
Q ss_pred CCCEEE-EEEeCCCCEEE-EEeCC----CeEEEEECC-CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 185 EGQIQC-IDFHPHEFLLA-TGSAD----RTVKFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 185 ~~~I~s-v~fspdg~~La-sgs~D----g~I~IwDl~-t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
.-.|.. +.|++++..|+ ++..+ ..|+..++. .+.. ..+......-..+.|+|+|++++...
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEEE
Confidence 556744 67778765544 55542 356667777 4444 44444333336999999999998543
No 360
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.48 E-value=0.017 Score=65.46 Aligned_cols=231 Identities=16% Similarity=0.209 Sum_probs=125.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC--------
Q 003459 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-------- 132 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-------- 132 (818)
.|+.+.|.++..-|++|...|.|.||.+...+... ......-....|.+. ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58899999998899999999999999987654332 000011111122111 01112223344432
Q ss_pred -CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--------CCCCEEEEEEeC-----CC-
Q 003459 133 -KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC--------HEGQIQCIDFHP-----HE- 197 (818)
Q Consensus 133 -~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--------h~~~I~sv~fsp-----dg- 197 (818)
..+...+....++|++++.+ |=.+++.|+.+|.+.|.|+|....++.-.. ....++++.|.. |+
T Consensus 75 gf~P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y 153 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY 153 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred ccCchhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence 12344455568999999998 455899999999999999998888876332 234588888873 23
Q ss_pred --CEEEEEeCCCeEEEEECCC---Ce----EEEEeCCCCCCeeEEE-EeCC---------------------CCEEEEEE
Q 003459 198 --FLLATGSADRTVKFWDLET---FE----LIGSAGPETSGVRCLT-FNPD---------------------GRTLLCGL 246 (818)
Q Consensus 198 --~~Lasgs~Dg~I~IwDl~t---~~----~i~~~~~~~~~I~sl~-fspd---------------------g~~Lasgs 246 (818)
-+|++|+..|.+.+|.+-- +. .......+.++|..|. |+.+ ..++++++
T Consensus 154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS 233 (395)
T PF08596_consen 154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS 233 (395)
T ss_dssp EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-
T ss_pred cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc
Confidence 4789999999999997741 21 2222234556666555 4322 12677777
Q ss_pred CCCEEEEEecCCceecccc-ccccceeeee-----ecCCCEEEEEEcCCeEEEEEecCCC
Q 003459 247 HESLKVFSWEPIRCHDAVD-VGWSRLSDLN-----VHEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 247 ~d~I~Vwd~~~~~~~~~~~-~~~~~v~~l~-----~~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
...++|+.....++..... .....-.... ...+..|++-..+|.|+++.+..-+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk 293 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK 293 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch
Confidence 8889999887766543322 1111111111 2356788899999999999876544
No 361
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.40 E-value=0.059 Score=61.53 Aligned_cols=229 Identities=11% Similarity=0.105 Sum_probs=121.4
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEe-------cCCCCCeEEEEEcCCCCEEEEEECC
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSL-------SGHTSGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l-------~~h~~~V~~l~fspdg~~Lasgs~D 80 (818)
.+.++.--.+.|.++.|.. +. .|++-..||.+++||+. |+....+ .-....+....+..+|-.+++ .+
T Consensus 72 ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~ 146 (410)
T PF04841_consen 72 LLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GN 146 (410)
T ss_pred EeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEEC--CC
Confidence 3444333337888888876 33 46667789999999985 3331111 111222333344445633333 35
Q ss_pred CeEEEEECCCCe-EEEEEc---CCCC------CeEE-EEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEE
Q 003459 81 GTIKLWDLEEAK-IVRTLT---GHRS------NCIS-VDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAI 149 (818)
Q Consensus 81 G~I~IWDl~t~~-~v~~l~---~h~~------~V~s-v~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l 149 (818)
+.+.+..-.... ..+.+. .... .+.. ..++.+....+....++.+++.+-...+. +. ..+++..|
T Consensus 147 ~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~i 222 (410)
T PF04841_consen 147 NRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKI 222 (410)
T ss_pred CeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEE
Confidence 555544322211 111111 1000 0000 22344444444444555565444322111 22 24679999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC
Q 003459 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (818)
Q Consensus 150 ~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~ 228 (818)
++||+|++++.-..+|.+.+.+..-.+.+.++... ......+.|.-+...++.- +..|.++. +...
T Consensus 223 avSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg-----------~~~~ 289 (410)
T PF04841_consen 223 AVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG-----------PDGD 289 (410)
T ss_pred EECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC-----------CCCC
Confidence 99999999999999999999987777777777654 3456677776553322222 22333332 2222
Q ss_pred CeeEEEEeCCCCEEEEEECCCEEEEEecCCcee
Q 003459 229 GVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH 261 (818)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~ 261 (818)
.+.|.-++..++..--|+++|+.-+.-..+
T Consensus 290 ---~~~~~~~~~~~l~~E~DG~riit~~~~~~l 319 (410)
T PF04841_consen 290 ---SISFWYDGPVILVSEIDGVRIITSTSHEFL 319 (410)
T ss_pred ---ceEEeccCceEEeccCCceEEEeCCceEEE
Confidence 234554555566666778888865544333
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.39 E-value=0.063 Score=58.69 Aligned_cols=217 Identities=14% Similarity=0.097 Sum_probs=131.7
Q ss_pred EEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec--
Q 003459 65 VSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-- 141 (818)
Q Consensus 65 l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~-- 141 (818)
-.|.++.. ++.+--..+.|.-|+..+++.. .+. +...+.++.....+..|+++. ..+++++..++..+..+..
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEecccc
Confidence 35667666 4445555788999998766432 233 233344555444455555553 3367788766655333321
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC-C
Q 003459 142 ---HTRGVNAIRFTPDGRWVVSGGE-----------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-D 206 (818)
Q Consensus 142 ---h~~~V~~l~fspdg~~L~sgs~-----------Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~-D 206 (818)
.....+.+...|+|.+.+.... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.|+.+.. .
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 1234567888899886665443 144555554 46666666655556689999999987777654 4
Q ss_pred CeEEEEECCC--C----e-EEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeccccccccceeeeee-
Q 003459 207 RTVKFWDLET--F----E-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNV- 276 (818)
Q Consensus 207 g~I~IwDl~t--~----~-~i~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~~~v~~l~~- 276 (818)
+.|+-|++.. + + ....+....+..-.++...+|.+.+++..+ .+.+|+-+ ++....+.+.....++.++
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 7888887762 1 1 122233345666788889999988655554 68888888 7777777666444444444
Q ss_pred -cCCCEEE-EEEc
Q 003459 277 -HEGKLLG-CSYN 287 (818)
Q Consensus 277 -~~g~lLa-tg~~ 287 (818)
++.+.|. ++..
T Consensus 264 G~~~~~L~iTs~~ 276 (307)
T COG3386 264 GPDLNTLYITSAR 276 (307)
T ss_pred CCCcCEEEEEecC
Confidence 4444444 4433
No 363
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.38 E-value=0.0066 Score=73.31 Aligned_cols=192 Identities=19% Similarity=0.275 Sum_probs=121.5
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE---E---e---cCCCC-CeEEEEEcCCCCEEEEE-ECCCeE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL---S---L---SGHTS-GIDSVSFDSSEVLVAAG-AASGTI 83 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~---~---l---~~h~~-~V~~l~fspdg~~Lasg-s~DG~I 83 (818)
+.+...+++.+....+-+++.+ ..|-|+.......+. . + .|..- +-..+-...+.++|+.- .....|
T Consensus 429 ~~~~n~~Lavg~k~DrSfVvRg--~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~l 506 (794)
T PF08553_consen 429 DGEKNSSLAVGYKNDRSFVVRG--SKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKL 506 (794)
T ss_pred CCCccceeEeeeccCceEEECC--CcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCce
Confidence 4556777777754344455443 257788764222111 1 1 11110 11111112234454443 345789
Q ss_pred EEEECCCCeEEEEEcCCCCC-eEEEEEeCC-------CCEEEEEECCCcEEEEECCCCe--EEE----EEecCCCCeEEE
Q 003459 84 KLWDLEEAKIVRTLTGHRSN-CISVDFHPF-------GEFFASGSLDTNLKIWDIRKKG--CIH----TYKGHTRGVNAI 149 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~-V~sv~fspd-------g~~Lasgs~Dg~I~IwDl~~~~--~i~----~l~~h~~~V~~l 149 (818)
+-.|++.|+++..+..|... |.. +.|+ ....+.|-.+..|+.||.|-.. ++. .| .......|+
T Consensus 507 y~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~ 583 (794)
T PF08553_consen 507 YKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCF 583 (794)
T ss_pred EEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEE
Confidence 99999999999999977654 544 4443 2345667778889999998543 221 12 134557788
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 003459 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLH-DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 150 ~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~-~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
+-+.+| +||+|+.+|.|++||- .|+..+ .+.+-..+|.+|..+.||+||++.+ +..|.+++.
T Consensus 584 aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 584 ATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred EecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 887776 6999999999999994 444333 3445578999999999999988776 567888886
No 364
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.33 E-value=0.039 Score=60.73 Aligned_cols=171 Identities=12% Similarity=0.159 Sum_probs=106.7
Q ss_pred eEEEEECCCCceEEEecC-CCCCeEEEE---EcCC----CCEEEEEEC----------CCeEEEEECCCC----eEEEEE
Q 003459 40 KVNLWAIGKPNAILSLSG-HTSGIDSVS---FDSS----EVLVAAGAA----------SGTIKLWDLEEA----KIVRTL 97 (818)
Q Consensus 40 ~V~lWdl~~~~~i~~l~~-h~~~V~~l~---fspd----g~~Lasgs~----------DG~I~IWDl~t~----~~v~~l 97 (818)
.|++.|..+.+.+..+.- ....+.+++ |..+ ..+|++|+. .|.|.++++... ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577888777766655442 222344433 3332 467777754 289999999884 122222
Q ss_pred --cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-EEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 98 --TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (818)
Q Consensus 98 --~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-~i~~l~~-h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~ 173 (818)
....++|++++-. +.+|+++. ++.|++|++...+ ....-.. ....+.++... ++++++|.....+.++..+
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh--CCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 2356788888776 44555554 5889999998777 4433221 22356666655 6699999988887776443
Q ss_pred C-CeEEEEEe--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 003459 174 A-GKLLHDFK--CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (818)
Q Consensus 174 t-~~~i~~~~--~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (818)
. +..+..+. .....++++.|-+++..++.+..+|.+.++...
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2 33233332 234568899998777799999999999999875
No 365
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.29 E-value=0.0043 Score=74.84 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=98.0
Q ss_pred ECCCcEEEEECCCCeEEEEEecCCCC-eEEEEEcC-----CCCEEEEEECCCeEEEEECCCC--eEEEE-Ee--cCCCCE
Q 003459 120 SLDTNLKIWDIRKKGCIHTYKGHTRG-VNAIRFTP-----DGRWVVSGGEDNTVKLWDLTAG--KLLHD-FK--CHEGQI 188 (818)
Q Consensus 120 s~Dg~I~IwDl~~~~~i~~l~~h~~~-V~~l~fsp-----dg~~L~sgs~Dg~I~IwDl~t~--~~i~~-~~--~h~~~I 188 (818)
.....|+-.|+..|+.+..++.|... |..++-.. .....+.|-.+..+..||.|-. +++.. .+ ......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 34578999999999999999987754 54443221 1334677888999999999863 23321 11 123457
Q ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEe
Q 003459 189 QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (818)
Q Consensus 189 ~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (818)
.|++-..+| +||+|+.+|.|++||--..+....+.+...+|.+|..+.||+||++.+...|-+++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 788777676 889999999999999433232333556688999999999999999988888877775
No 366
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.26 E-value=8.2e-05 Score=84.51 Aligned_cols=195 Identities=21% Similarity=0.336 Sum_probs=128.1
Q ss_pred CCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeE--EEEEcCCCCCeEEEEEeCC-CCEEEEEE----CCCcEEEEE
Q 003459 59 TSGIDSVSFDS--SEVLVAAGAASGTIKLWDLEEAKI--VRTLTGHRSNCISVDFHPF-GEFFASGS----LDTNLKIWD 129 (818)
Q Consensus 59 ~~~V~~l~fsp--dg~~Lasgs~DG~I~IWDl~t~~~--v~~l~~h~~~V~sv~fspd-g~~Lasgs----~Dg~I~IwD 129 (818)
...+.|+++.- +...+++|..+|.|.+-.+....- .....+|...+++++|.+- .+.||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 45677888754 345788999999999988765432 2345678889999999985 35666663 356899999
Q ss_pred CCCC--eEEE--EEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeC-CCCEEEEE
Q 003459 130 IRKK--GCIH--TYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATG 203 (818)
Q Consensus 130 l~~~--~~i~--~l~~-h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fsp-dg~~Lasg 203 (818)
+.++ .+.. .+.+ ......+++|..+.+.+++|.....+.++|++...... ....+..+..+...| .+.++++.
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceecc
Confidence 9876 2211 1222 33445688999888999999998899999998432111 111244566777888 66677776
Q ss_pred eCCCeEEEEE-CCCCeE-EEEeCCCC----CCeeEEEEeCCCC-EEEEEECCC--EEEEEe
Q 003459 204 SADRTVKFWD-LETFEL-IGSAGPET----SGVRCLTFNPDGR-TLLCGLHES--LKVFSW 255 (818)
Q Consensus 204 s~Dg~I~IwD-l~t~~~-i~~~~~~~----~~I~sl~fspdg~-~Lasgs~d~--I~Vwd~ 255 (818)
. ||.|.+|| ..+.+. +..+.... ..+..++|+|... .+++...++ |+.|+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 5 99999999 443332 22222112 2488999999643 344444554 555554
No 367
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.23 E-value=0.21 Score=52.85 Aligned_cols=190 Identities=12% Similarity=0.123 Sum_probs=123.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEcCCC-CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE
Q 003459 60 SGIDSVSFDSSEVLVAAGAASG--TIKLWDLEEAKIVRTLTGHR-SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI 136 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG--~I~IWDl~t~~~v~~l~~h~-~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i 136 (818)
.-..++.|..++.++-+.+.-| .|+.+|+.+++......-.. ----.++.. +++.+...-.++...+||..+.+.+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEE
Confidence 3456788877888888887776 79999999999876654222 222344444 2334444446889999999999998
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecC-----CCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003459 137 HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH-----EGQIQCIDFHPHEFLLATGSADRTVKF 211 (818)
Q Consensus 137 ~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-----~~~I~sv~fspdg~~Lasgs~Dg~I~I 211 (818)
.++.- .+.=+.++ .||..|+.......|+++|..+.+....+... -..++-+.|. +|.+.|=.-....|..
T Consensus 124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~ 199 (264)
T PF05096_consen 124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVR 199 (264)
T ss_dssp EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEE
Confidence 88863 34556676 46777888777889999999887776666532 1246667775 6777776767788999
Q ss_pred EECCCCeEEEEeCC---------------CCCCeeEEEEeCCCCEEEEEECCCEEEEE
Q 003459 212 WDLETFELIGSAGP---------------ETSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (818)
Q Consensus 212 wDl~t~~~i~~~~~---------------~~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (818)
.|..+|+.+..+.. ...-.+.|+|+|....|++.+..=-++|.
T Consensus 200 Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lye 257 (264)
T PF05096_consen 200 IDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYE 257 (264)
T ss_dssp EETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEE
T ss_pred EeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEE
Confidence 99999998876411 13457999999987766655544223443
No 368
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.10 E-value=0.12 Score=63.20 Aligned_cols=192 Identities=12% Similarity=0.091 Sum_probs=123.8
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCC--------eEEEEEcC----------------CCCEEEEEECCCeEEEE
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSG--------IDSVSFDS----------------SEVLVAAGAASGTIKLW 86 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~--------V~~l~fsp----------------dg~~Lasgs~DG~I~IW 86 (818)
.|+.++.++.|.-.|..+++.+..+...... ...+.+.. ++..|+.++.|+.|.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 5777778899999999999998887643211 12233321 34478888999999999
Q ss_pred ECCCCeEEEEEcCCCCCeE-------------EEEEeC--CCCEEEEEEC----------CCcEEEEECCCCeEEEEEec
Q 003459 87 DLEEAKIVRTLTGHRSNCI-------------SVDFHP--FGEFFASGSL----------DTNLKIWDIRKKGCIHTYKG 141 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~-------------sv~fsp--dg~~Lasgs~----------Dg~I~IwDl~~~~~i~~l~~ 141 (818)
|.++|+.+..+.. .+.+. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+..
T Consensus 276 DA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~ 354 (764)
T TIGR03074 276 DADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDP 354 (764)
T ss_pred ECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEec
Confidence 9999999887642 22110 111111 1446666643 68899999999999887652
Q ss_pred C---------CC--------Ce-EEEEEcCCCCEEEEEE------------------CCCeEEEEECCCCeEEEEEecCC
Q 003459 142 H---------TR--------GV-NAIRFTPDGRWVVSGG------------------EDNTVKLWDLTAGKLLHDFKCHE 185 (818)
Q Consensus 142 h---------~~--------~V-~~l~fspdg~~L~sgs------------------~Dg~I~IwDl~t~~~i~~~~~h~ 185 (818)
- .+ .+ ..+++.++...++.+. ..+.|.-.|.++|+....++...
T Consensus 355 g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~ 434 (764)
T TIGR03074 355 GNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVH 434 (764)
T ss_pred CCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccC
Confidence 1 00 01 2334455444444321 23567888999999988887522
Q ss_pred CCE---------EEEEEeC-CCC---EEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 186 GQI---------QCIDFHP-HEF---LLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 186 ~~I---------~sv~fsp-dg~---~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
..+ .-+.+.. +|. .++.++.+|.++++|-++|+.+...
T Consensus 435 hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 435 HDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred CccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 111 1122322 553 8899999999999999999988764
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.04 E-value=0.11 Score=57.09 Aligned_cols=178 Identities=12% Similarity=0.207 Sum_probs=107.4
Q ss_pred CcEEEEEeC----------CCeEEEEECCCC----ceEEEe--cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 29 SRVLVTGGE----------DHKVNLWAIGKP----NAILSL--SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 29 ~~lLatgs~----------Dg~V~lWdl~~~----~~i~~l--~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (818)
..+++.|.. .|.|.++++.+. ..+..+ ....++|++++-. ++ +|+++. .+.|.+|++...+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc
Confidence 567777743 289999999773 222222 2357889998876 34 354443 5889999998877
Q ss_pred -EEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-CeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 93 -IVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (818)
Q Consensus 93 -~v~~l~-~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-~~~i~~l~--~h~~~V~~l~fspdg~~L~sgs~Dg~I 167 (818)
....-. .....+.++... ++++++|+....|.++..+. ...+..+. .....++++.|-++++.++.+..+|.|
T Consensus 119 ~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl 196 (321)
T PF03178_consen 119 TLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL 196 (321)
T ss_dssp SEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred cchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence 444332 123355666555 67999999988888775443 23232222 234558888898777799999999999
Q ss_pred EEEECCC-------C--eEEEEEecC-CCCEEEE---EEeC--CC------CEEEEEeCCCeEEE
Q 003459 168 KLWDLTA-------G--KLLHDFKCH-EGQIQCI---DFHP--HE------FLLATGSADRTVKF 211 (818)
Q Consensus 168 ~IwDl~t-------~--~~i~~~~~h-~~~I~sv---~fsp--dg------~~Lasgs~Dg~I~I 211 (818)
.++.... + +.......| ...|+++ .+.| .+ ..++.++.+|.|..
T Consensus 197 ~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 197 FVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 9987652 2 222222222 3456766 4445 22 24777788888773
No 370
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.022 Score=64.26 Aligned_cols=142 Identities=18% Similarity=0.214 Sum_probs=100.6
Q ss_pred CCCEE-EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC-------EEEEEECCCcEEEEECCCCe--EEEEE
Q 003459 70 SEVLV-AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-------FFASGSLDTNLKIWDIRKKG--CIHTY 139 (818)
Q Consensus 70 dg~~L-asgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~-------~Lasgs~Dg~I~IwDl~~~~--~i~~l 139 (818)
+.++| ..+..-..|+-.|++.|+++..+.-+.. |.-+.+.|+.+ .-+.|-.|..|+-||.+-.. .+..-
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 44444 4455556788999999999999987766 77788888754 23446667889999987432 22222
Q ss_pred ecC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE-EEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 003459 140 KGH----TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH-DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 140 ~~h----~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~-~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
++| .....|++-..+| ++++|+.+|.|++||- .+.... -+.+...+|..+..+.+|++|++.+ +.++.+.++
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 2345666666665 7999999999999996 444333 3556678999999999999887765 667777776
Q ss_pred C
Q 003459 215 E 215 (818)
Q Consensus 215 ~ 215 (818)
.
T Consensus 500 ~ 500 (644)
T KOG2395|consen 500 L 500 (644)
T ss_pred e
Confidence 4
No 371
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.98 E-value=0.049 Score=64.89 Aligned_cols=201 Identities=14% Similarity=0.111 Sum_probs=110.9
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE------CCC--eEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003459 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA------ASG--TIKLWDLEEAKIVRTLTGHRSNCISVDF 109 (818)
Q Consensus 38 Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs------~DG--~I~IWDl~t~~~v~~l~~h~~~V~sv~f 109 (818)
+|.+.-.+-.....+....+....+...+++|+|+.++... .|+ .|.+++.. +.......+. ....-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceE
Confidence 56665544222222222223334678899999999887765 243 56666653 2222223332 3778899
Q ss_pred eCCCCEEEEEECC------------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE---EECCC
Q 003459 110 HPFGEFFASGSLD------------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL---WDLTA 174 (818)
Q Consensus 110 spdg~~Lasgs~D------------g~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~I---wDl~t 174 (818)
+|+|..|++.... +.+++.++..+.... .....|..+.|+|||.+++... +|.|++ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9998877776532 233333444333222 2345799999999999988876 577777 44444
Q ss_pred CeE-E---EEEe-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE--CCCCeEEEEeCC--CCCCeeEEEEeCCCCEEEEE
Q 003459 175 GKL-L---HDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWD--LETFELIGSAGP--ETSGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 175 ~~~-i---~~~~-~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwD--l~t~~~i~~~~~--~~~~I~sl~fspdg~~Lasg 245 (818)
|.. + ..+. .-...+..+.|..++.++ ++..++...+|. +.... ...+.. ...++..++-+++ .|++.
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~ 556 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVT 556 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEE
Confidence 531 1 1122 122346889999999865 555444444454 44222 111112 2455666766653 34444
Q ss_pred ECCC
Q 003459 246 LHES 249 (818)
Q Consensus 246 s~d~ 249 (818)
..++
T Consensus 557 ~~~g 560 (591)
T PRK13616 557 DARA 560 (591)
T ss_pred cCCc
Confidence 4444
No 372
>PHA02713 hypothetical protein; Provisional
Probab=96.97 E-value=0.037 Score=65.77 Aligned_cols=219 Identities=9% Similarity=0.045 Sum_probs=110.1
Q ss_pred eEEEEECCCCeEEEE--EcCCCCCeEEEEEeCCCCEEEEEECC------CcEEEEECCCCeEEEEE--ecCCCCeEEEEE
Q 003459 82 TIKLWDLEEAKIVRT--LTGHRSNCISVDFHPFGEFFASGSLD------TNLKIWDIRKKGCIHTY--KGHTRGVNAIRF 151 (818)
Q Consensus 82 ~I~IWDl~t~~~v~~--l~~h~~~V~sv~fspdg~~Lasgs~D------g~I~IwDl~~~~~i~~l--~~h~~~V~~l~f 151 (818)
.+..||..+++.... +...... .+++.. ++..++.|+.+ ..+..||..+......- ....... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE
Confidence 567788877653321 1111111 223332 46666777653 34778898876542211 1111111 2222
Q ss_pred cCCCCEEEEEECCC-----eEEEEECCCCeEEE--EEecCCCCEEEEEEeCCCCEEEEEeCCC-----------------
Q 003459 152 TPDGRWVVSGGEDN-----TVKLWDLTAGKLLH--DFKCHEGQIQCIDFHPHEFLLATGSADR----------------- 207 (818)
Q Consensus 152 spdg~~L~sgs~Dg-----~I~IwDl~t~~~i~--~~~~h~~~I~sv~fspdg~~Lasgs~Dg----------------- 207 (818)
-+|+..+.||.++ .+..||..+.+-.. .+.........+ .-+|.+.+.|+.++
T Consensus 350 -~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 -IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred -ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccc
Confidence 2577778888764 47889988653221 111111111122 23677888887653
Q ss_pred ------eEEEEECCCCeE--EEEeCCCCCCeeEEEEeCCCCEEEEEECC-------CEEEEEecC-Cceeccccccccc-
Q 003459 208 ------TVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGRTLLCGLHE-------SLKVFSWEP-IRCHDAVDVGWSR- 270 (818)
Q Consensus 208 ------~I~IwDl~t~~~--i~~~~~~~~~I~sl~fspdg~~Lasgs~d-------~I~Vwd~~~-~~~~~~~~~~~~~- 270 (818)
.+..||..+.+- +..+...... .+++ .-+|+..++|+.+ .+..||.++ .+-...-......
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 477788776543 2222111111 1222 2356666666432 234565554 3322222222211
Q ss_pred eeeeeecCCCEEEEEEcCC--eEEEEEecCCCceeeeecc
Q 003459 271 LSDLNVHEGKLLGCSYNQS--CVGVWVVDISRIEPYTIGS 308 (818)
Q Consensus 271 v~~l~~~~g~lLatg~~Dg--~V~IWdvd~~~~~~~~~~~ 308 (818)
...+...+|++.++|+.+| .+..||+.+.+-......+
T Consensus 505 ~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 505 ALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred cceeEEECCEEEEEeeecceeehhhcCcccccccchhhhc
Confidence 2234457899999999888 6777777777765544333
No 373
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.95 E-value=0.044 Score=65.16 Aligned_cols=229 Identities=17% Similarity=0.178 Sum_probs=123.5
Q ss_pred CCCCEEEEEECCC------eEEEEECCCCeEEEEEcC-CCCCeEEEEEeCCCCEEEEEECC-C-----cEEEEECCCCeE
Q 003459 69 SSEVLVAAGAASG------TIKLWDLEEAKIVRTLTG-HRSNCISVDFHPFGEFFASGSLD-T-----NLKIWDIRKKGC 135 (818)
Q Consensus 69 pdg~~Lasgs~DG------~I~IWDl~t~~~v~~l~~-h~~~V~sv~fspdg~~Lasgs~D-g-----~I~IwDl~~~~~ 135 (818)
..+.+++.|+.++ .+..+|..++.......- ....-.+++.. .+..+++|+.| | .+..||.++.+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 3456777777773 677888887744332221 22223444554 45778888888 3 678889887764
Q ss_pred EEEE--ecCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEecCCCCEEEE-EEeCCCCEEEEEeCCC
Q 003459 136 IHTY--KGHTRGVNAIRFTPDGRWVVSGGEDN-----TVKLWDLTAGKLLHDFKCHEGQIQCI-DFHPHEFLLATGSADR 207 (818)
Q Consensus 136 i~~l--~~h~~~V~~l~fspdg~~L~sgs~Dg-----~I~IwDl~t~~~i~~~~~h~~~I~sv-~fspdg~~Lasgs~Dg 207 (818)
...- ...........+ +|...++||.|| .|-.||..+.+--..-. ......+. ...-+|.+.++|+.++
T Consensus 362 ~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCC
Confidence 4321 111111111122 688888999986 47788877654221111 11121222 2223678888888654
Q ss_pred ------eEEEEECCCCeE--EEEeCCCCCCeeEEEEeCCCCEEEEEECCC------EEEEEecCCceeccccccccc-ee
Q 003459 208 ------TVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGRTLLCGLHES------LKVFSWEPIRCHDAVDVGWSR-LS 272 (818)
Q Consensus 208 ------~I~IwDl~t~~~--i~~~~~~~~~I~sl~fspdg~~Lasgs~d~------I~Vwd~~~~~~~~~~~~~~~~-v~ 272 (818)
.+..||..+.+- +..+........ ++.- ++.+.++|+.++ +..||..+.+-..+-...... -.
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~ 516 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAV 516 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccc
Confidence 577888876543 333322222222 3322 566666666443 556666554433222111111 11
Q ss_pred eeeecCCCEEEEEEcCC-----eEEEEEecCCCcee
Q 003459 273 DLNVHEGKLLGCSYNQS-----CVGVWVVDISRIEP 303 (818)
Q Consensus 273 ~l~~~~g~lLatg~~Dg-----~V~IWdvd~~~~~~ 303 (818)
.+...++++.++|+.|| +|..||..+.+-..
T Consensus 517 g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 517 GVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred cEEEECCEEEEEecccCccccceeEEcCCCCCceee
Confidence 23446788888888875 56667666555433
No 374
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0035 Score=71.75 Aligned_cols=94 Identities=17% Similarity=0.290 Sum_probs=80.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeE-EEEEeCCCCEEEEEECCCcEEEEECCCCeEEE
Q 003459 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI-SVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~-sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~ 137 (818)
...|.-+.|+|.-.+||.+..+|.|.+..+. .+.+.++.-|..++. +++|.|||+.|++|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3568889999999999999999999999988 788888887777777 99999999999999999999999999988776
Q ss_pred EEe-cCCCCeEEEEEcC
Q 003459 138 TYK-GHTRGVNAIRFTP 153 (818)
Q Consensus 138 ~l~-~h~~~V~~l~fsp 153 (818)
.+. .....|.++-|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 631 2345677787863
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.94 E-value=0.08 Score=63.07 Aligned_cols=170 Identities=13% Similarity=0.043 Sum_probs=98.1
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE------CCC--cEEEEECCCCeEEEEEecCCCCeEEEEE
Q 003459 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS------LDT--NLKIWDIRKKGCIHTYKGHTRGVNAIRF 151 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs------~Dg--~I~IwDl~~~~~i~~l~~h~~~V~~l~f 151 (818)
+|.+.-.+-.....+.-..+....+...+++|+|+.++... .|. .|++++.. +.. ..+.. ......-.|
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsW 404 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSW 404 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceE
Confidence 66665544322222222223334678899999999877765 233 56666653 222 33321 223788899
Q ss_pred cCCCCEEEEEECC------------CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEE---EECCC
Q 003459 152 TPDGRWVVSGGED------------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF---WDLET 216 (818)
Q Consensus 152 spdg~~L~sgs~D------------g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~I---wDl~t 216 (818)
+|||.+|++.... +.+.+.++..+.... ...+.|..+.|+|||..++... +|.|++ -....
T Consensus 405 spDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~ 480 (591)
T PRK13616 405 SLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTED 480 (591)
T ss_pred CCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCC
Confidence 9999988877533 223333443332222 2246799999999999888876 577777 45445
Q ss_pred CeE-E---EEeCC-CCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 217 FEL-I---GSAGP-ETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 217 ~~~-i---~~~~~-~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
|.. + ..+.. ....+.++.|..++.+++......-.+|.++
T Consensus 481 G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 481 GQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred CceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence 541 1 11222 2333688999999986644333334455544
No 376
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0036 Score=71.69 Aligned_cols=94 Identities=21% Similarity=0.284 Sum_probs=80.7
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeE-EEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 101 RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVN-AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH 179 (818)
Q Consensus 101 ~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~-~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~ 179 (818)
...+..+.|+|.-..||.+..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.|++|-.||+|++.|..++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467889999999999999999999999987 777888887777777 99999999999999999999999999998887
Q ss_pred EEe-cCCCCEEEEEEeC
Q 003459 180 DFK-CHEGQIQCIDFHP 195 (818)
Q Consensus 180 ~~~-~h~~~I~sv~fsp 195 (818)
.+. .....|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 742 2456788888864
No 377
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.86 E-value=0.99 Score=49.23 Aligned_cols=280 Identities=13% Similarity=0.080 Sum_probs=132.4
Q ss_pred cccceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-CceEEEecC--C---CCCeEEEEEcCCCCEEEE
Q 003459 3 TKRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLSG--H---TSGIDSVSFDSSEVLVAA 76 (818)
Q Consensus 3 t~r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~-~~~i~~l~~--h---~~~V~~l~fspdg~~Las 76 (818)
....|+...+. -...+..|+|.. ..+-+++| ..+.| +...+ ++.-..... . .....+|.|..+ ..+++
T Consensus 4 ~~~~W~~v~l~-t~~~l~dV~F~d-~~~G~~VG-~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv 77 (302)
T PF14870_consen 4 SGNSWQQVSLP-TDKPLLDVAFVD-PNHGWAVG-AYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV 77 (302)
T ss_dssp SS--EEEEE-S--SS-EEEEEESS-SS-EEEEE-TTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE
T ss_pred cCCCcEEeecC-CCCceEEEEEec-CCEEEEEe-cCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE
Confidence 34556666654 344899999983 44445555 45543 33322 322222111 1 123667777643 34444
Q ss_pred EECCCeEEEEECCCCeEEEEEc---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEc
Q 003459 77 GAASGTIKLWDLEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFT 152 (818)
Q Consensus 77 gs~DG~I~IWDl~t~~~v~~l~---~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-~i~~l~~h~~~V~~l~fs 152 (818)
| ..| +.+...+.|+.-..+. .-......+....++ ....++..|.|+.=. +.++ .......-.+.+..+..+
T Consensus 78 G-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~ 153 (302)
T PF14870_consen 78 G-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRS 153 (302)
T ss_dssp E-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-
T ss_pred c-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEEC
Confidence 4 455 3344444454333332 122334444444444 333344556554332 2222 233334445778889999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-CCCCeEEEE----eCCCC
Q 003459 153 PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWD-LETFELIGS----AGPET 227 (818)
Q Consensus 153 pdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwD-l~t~~~i~~----~~~~~ 227 (818)
+||++++++.....+.-||--...-...-......|..|.|.|++.+.+++ ..|.|++=+ ....+.... +....
T Consensus 154 ~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~ 232 (302)
T PF14870_consen 154 SDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNG 232 (302)
T ss_dssp TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--
T ss_pred CCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCc
Confidence 999988888666666678854321122222246789999999998776655 788898887 222222222 22234
Q ss_pred CCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccc---cccceeeeeecCCCEEEEEEcCCeEEEE
Q 003459 228 SGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV---GWSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~---~~~~v~~l~~~~g~lLatg~~Dg~V~IW 294 (818)
..+.+++|.+++...++|..+. -+...+.++....... -...+..+.+.+.+.-.+-+.+|.|--|
T Consensus 233 ~~~ld~a~~~~~~~wa~gg~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 233 YGILDLAYRPPNEIWAVGGSGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp S-EEEEEESSSS-EEEEESTT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred eeeEEEEecCCCCEEEEeCCcc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 4589999999988888776664 4666676665544322 1233445555444555555677777555
No 378
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.85 E-value=0.062 Score=63.91 Aligned_cols=213 Identities=15% Similarity=0.188 Sum_probs=113.8
Q ss_pred CCcEEEEEeCCC------eEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEE
Q 003459 28 SSRVLVTGGEDH------KVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSEVLVAAGAAS------GTIKLWDLEEAKIV 94 (818)
Q Consensus 28 ~~~lLatgs~Dg------~V~lWdl~~~~~i~~l~~-h~~~V~~l~fspdg~~Lasgs~D------G~I~IWDl~t~~~v 94 (818)
.+.+++.||.++ .+..||..++.......- +...-.+++.. ++.+.++|+.| .++..||..+++-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 456777777763 677888877654433221 22233344444 45677788888 35778888776633
Q ss_pred EE--EcCCCCCeEEEEEeCCCCEEEEEECCC-----cEEEEECCCCeEEEEEecCCCCeEEEEE-cCCCCEEEEEECCC-
Q 003459 95 RT--LTGHRSNCISVDFHPFGEFFASGSLDT-----NLKIWDIRKKGCIHTYKGHTRGVNAIRF-TPDGRWVVSGGEDN- 165 (818)
Q Consensus 95 ~~--l~~h~~~V~sv~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~i~~l~~h~~~V~~l~f-spdg~~L~sgs~Dg- 165 (818)
.. +....... .++. -+|...++|+.|| +|-.||..+.+.-..-.... ....... .-+|...++||.++
T Consensus 363 ~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 363 PVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCC
Confidence 21 11111111 1222 2577888898887 47778877654332221111 1122211 12577888888654
Q ss_pred -----eEEEEECCCCeEEE--EEecCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCeEEEE--eCCCCCCee
Q 003459 166 -----TVKLWDLTAGKLLH--DFKCHEGQIQCIDFHPHEFLLATGSADR-----TVKFWDLETFELIGS--AGPETSGVR 231 (818)
Q Consensus 166 -----~I~IwDl~t~~~i~--~~~~h~~~I~sv~fspdg~~Lasgs~Dg-----~I~IwDl~t~~~i~~--~~~~~~~I~ 231 (818)
.+..||..+++-.. .+........ ++ .-++.+.+.|+.|+ +|..||..+.+-... +......+.
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG 517 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc
Confidence 56788887764322 2221111111 22 23677888888776 377888876553332 332222222
Q ss_pred EEEEeCCCCEEEEEECC
Q 003459 232 CLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 232 sl~fspdg~~Lasgs~d 248 (818)
...+ +++..++|+.+
T Consensus 518 ~~~~--~~~ly~vGG~~ 532 (571)
T KOG4441|consen 518 VVVL--GGKLYAVGGFD 532 (571)
T ss_pred EEEE--CCEEEEEeccc
Confidence 2222 45566666544
No 379
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.016 Score=65.41 Aligned_cols=138 Identities=17% Similarity=0.235 Sum_probs=99.8
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCCC-e-EEEEEecC--
Q 003459 116 FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-------WVVSGGEDNTVKLWDLTAG-K-LLHDFKCH-- 184 (818)
Q Consensus 116 Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~-------~L~sgs~Dg~I~IwDl~t~-~-~i~~~~~h-- 184 (818)
|..+.....|+-.|++.|+.+..++-+.. |.-+.+.|+++ .-+.|-.+..|.-||.|-. + .+...++|
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 44555667799999999999999997776 77888888653 2345667889999999842 2 22222222
Q ss_pred --CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEe
Q 003459 185 --EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (818)
Q Consensus 185 --~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (818)
.....|.+-..+| ++++|+.+|.|++||--.......+.+...+|..+..+.||++|++.+...+.+.+.
T Consensus 428 ~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 428 STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 2234555555555 889999999999999733333344667788999999999999999888877666654
No 380
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.25 Score=52.58 Aligned_cols=193 Identities=14% Similarity=0.212 Sum_probs=129.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCC-CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 003459 56 SGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH-RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG 134 (818)
Q Consensus 56 ~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h-~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~ 134 (818)
.+-...+.++.|+|+.+.|++......-.+|=-.+|+.++++.-. -.....+.|..+|.+.++--.+..++++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 445566999999999999988888888888877889999887621 2334568888888888888788889888776543
Q ss_pred EEEEE-------e--cC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-E--EEEEecC-------CCCEEEEEEe
Q 003459 135 CIHTY-------K--GH-TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK-L--LHDFKCH-------EGQIQCIDFH 194 (818)
Q Consensus 135 ~i~~l-------~--~h-~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~-~--i~~~~~h-------~~~I~sv~fs 194 (818)
.+... . .+ +.....++|.|..+.|+.+-+..-+.||....+. . ......+ -..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22111 1 12 5567899999998889888887777776655332 1 1111111 1346778888
Q ss_pred CC-CCEEEEEeCCCeEEEEECCCCeEEEEeC---CC------CCCeeEEEEeCCCCEEEEEECCC
Q 003459 195 PH-EFLLATGSADRTVKFWDLETFELIGSAG---PE------TSGVRCLTFNPDGRTLLCGLHES 249 (818)
Q Consensus 195 pd-g~~Lasgs~Dg~I~IwDl~t~~~i~~~~---~~------~~~I~sl~fspdg~~Lasgs~d~ 249 (818)
+. +.+|+.+.+++.+.-.|... ..+..+. +. -...-.++..++|.+.+++--+.
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G-~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPnl 305 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSG-EVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPNL 305 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCC-CeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCCc
Confidence 74 77888888888888888764 3333321 11 12235677777777666664443
No 381
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.80 E-value=0.94 Score=48.09 Aligned_cols=191 Identities=12% Similarity=0.087 Sum_probs=122.8
Q ss_pred eEEEEecCCC--CEEEEEEeeCCCcEEEEEeCCC--eEEEEECCCCceEEEecCC-CCCeEEEEEcCCCCEEEEEECCCe
Q 003459 8 KLQEFVAHSS--TVNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGH-TSGIDSVSFDSSEVLVAAGAASGT 82 (818)
Q Consensus 8 kl~~~~~H~~--~V~~lafsp~~~~lLatgs~Dg--~V~lWdl~~~~~i~~l~~h-~~~V~~l~fspdg~~Lasgs~DG~ 82 (818)
++..-..|.. -...+.|.. ++.++-+.|.-| .|+.+|+.+++......-. .---..++...+ ++....-.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCe
Confidence 4444445554 356788865 667777777666 6889999999877655422 222334555433 44445567899
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--C---CCeEEEEEcCCCCE
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--T---RGVNAIRFTPDGRW 157 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h--~---~~V~~l~fspdg~~ 157 (818)
..+||..+.+.+.++. ....-+.++ .+++.|+.......|+++|..+.+....+... . ..++-+.|- +|..
T Consensus 112 ~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I 187 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKI 187 (264)
T ss_dssp EEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred EEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEE
Confidence 9999999999999887 345667777 45778888877889999999888777666432 1 245667776 5666
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEec------------C---CCCEEEEEEeCCCCEEEEEe
Q 003459 158 VVSGGEDNTVKLWDLTAGKLLHDFKC------------H---EGQIQCIDFHPHEFLLATGS 204 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~~~------------h---~~~I~sv~fspdg~~Lasgs 204 (818)
.|=.-....|...|..+|+....+.. + ..-.+.|+|.|....|...+
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 66566677899999999998887641 0 24589999999755444443
No 382
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.16 Score=53.64 Aligned_cols=202 Identities=15% Similarity=0.144 Sum_probs=125.2
Q ss_pred CCeEEEEEeCCCCE-EEEEECCC-cEEEEECCCCeEEEEEecCCC--CeEEEEEcCCCCEEEEEECC-----CeEEEEEC
Q 003459 102 SNCISVDFHPFGEF-FASGSLDT-NLKIWDIRKKGCIHTYKGHTR--GVNAIRFTPDGRWVVSGGED-----NTVKLWDL 172 (818)
Q Consensus 102 ~~V~sv~fspdg~~-Lasgs~Dg-~I~IwDl~~~~~i~~l~~h~~--~V~~l~fspdg~~L~sgs~D-----g~I~IwDl 172 (818)
.....|+|+|.-.. ++.+-.-| ...++|....+.+.++....+ ..-.=.|+|||.+|+..-.| |.|-|||.
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~ 147 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA 147 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence 34456788886553 55555544 456889887776665543221 12234699999999987544 78999999
Q ss_pred CCC-eEEEEEecCCCCEEEEEEeCCCCEEEEEeC------------------CCeEEEEECCCCeEEEEeC----CCCCC
Q 003459 173 TAG-KLLHDFKCHEGQIQCIDFHPHEFLLATGSA------------------DRTVKFWDLETFELIGSAG----PETSG 229 (818)
Q Consensus 173 ~t~-~~i~~~~~h~~~I~sv~fspdg~~Lasgs~------------------Dg~I~IwDl~t~~~i~~~~----~~~~~ 229 (818)
+.+ ..+.++..|.-.-..+.|.+||+.|+.+.. .-.+.+.|..+|+++.+.. .+.-.
T Consensus 148 r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lS 227 (366)
T COG3490 148 REGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLS 227 (366)
T ss_pred ccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcc
Confidence 854 356677777767788999999999888742 1124455555666654432 23456
Q ss_pred eeEEEEeCCCCEEEEEECCC------EEEEEecCCceeccccccc-------cceeeeeec--CCCEEEEEEcCCeEEEE
Q 003459 230 VRCLTFNPDGRTLLCGLHES------LKVFSWEPIRCHDAVDVGW-------SRLSDLNVH--EGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 230 I~sl~fspdg~~Lasgs~d~------I~Vwd~~~~~~~~~~~~~~-------~~v~~l~~~--~g~lLatg~~Dg~V~IW 294 (818)
|+.++..+||+.++.+-..+ .-|=....++.+..++..- ..+..+..+ ++-+.+++-..++.-+|
T Consensus 228 iRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~ 307 (366)
T COG3490 228 IRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIW 307 (366)
T ss_pred eeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEE
Confidence 88899999998877553221 1111222333333332221 123334443 45555566667788999
Q ss_pred EecCCCcee
Q 003459 295 VVDISRIEP 303 (818)
Q Consensus 295 dvd~~~~~~ 303 (818)
|.+++.+..
T Consensus 308 da~tG~vv~ 316 (366)
T COG3490 308 DAATGAVVS 316 (366)
T ss_pred EcCCCcEEe
Confidence 999999765
No 383
>PHA02713 hypothetical protein; Provisional
Probab=96.77 E-value=0.096 Score=62.27 Aligned_cols=202 Identities=12% Similarity=0.099 Sum_probs=99.2
Q ss_pred eEEEEECCCCceEEEecCCCCC-eEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEcC---CCCCeEEEEE
Q 003459 40 KVNLWAIGKPNAILSLSGHTSG-IDSVSFDSSEVLVAAGAAS------GTIKLWDLEEAKIVRTLTG---HRSNCISVDF 109 (818)
Q Consensus 40 ~V~lWdl~~~~~i~~l~~h~~~-V~~l~fspdg~~Lasgs~D------G~I~IWDl~t~~~v~~l~~---h~~~V~sv~f 109 (818)
.+..||..+.+....-.-.... -.+++. -++.+++.||.+ ..+..||..++... .+.. ..... +++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~-~~~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRF-SLAV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhce-eEEE
Confidence 4677887665533211111111 112222 256677777753 34778888776532 2221 11111 2222
Q ss_pred eCCCCEEEEEECCC-----cEEEEECCCCeEEEE--EecCCCCeEEEEEcCCCCEEEEEECCC-----------------
Q 003459 110 HPFGEFFASGSLDT-----NLKIWDIRKKGCIHT--YKGHTRGVNAIRFTPDGRWVVSGGEDN----------------- 165 (818)
Q Consensus 110 spdg~~Lasgs~Dg-----~I~IwDl~~~~~i~~--l~~h~~~V~~l~fspdg~~L~sgs~Dg----------------- 165 (818)
-+|...+.|+.++ .+..||..+.+.... +.........+.+ +|+..+.||.++
T Consensus 350 -~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 -IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred -ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence 2567777777654 488899887654321 1111111112222 577777777653
Q ss_pred ------eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCC---CeEEEEeCCCCCCe
Q 003459 166 ------TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD------RTVKFWDLET---FELIGSAGPETSGV 230 (818)
Q Consensus 166 ------~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D------g~I~IwDl~t---~~~i~~~~~~~~~I 230 (818)
.+..||..+.+-...-.-...........-++.+.+.|+.+ ..+..||.++ +..+..+.......
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 47778877654221111111111111223356777777754 2467899886 34444443322222
Q ss_pred eEEEEeCCCCEEEEEECCC
Q 003459 231 RCLTFNPDGRTLLCGLHES 249 (818)
Q Consensus 231 ~sl~fspdg~~Lasgs~d~ 249 (818)
....+ +|+..++|+.++
T Consensus 507 ~~~~~--~~~iyv~Gg~~~ 523 (557)
T PHA02713 507 HTILH--DNTIMMLHCYES 523 (557)
T ss_pred eeEEE--CCEEEEEeeecc
Confidence 22222 677777877665
No 384
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.76 E-value=0.11 Score=47.48 Aligned_cols=101 Identities=16% Similarity=0.250 Sum_probs=69.9
Q ss_pred EEEEEEee---CCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 19 VNCLKIGR---KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 19 V~~lafsp---~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~ 95 (818)
|+++++.. ++...|++|+.|..|++|+ ..+.+..+. .++.|++++-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 56666654 4557899999999999998 346666666 4567888877665 56888899999999984 33334
Q ss_pred EEcCCCCCeEEEEEeC-C--C-CEEEEEECCCcEE
Q 003459 96 TLTGHRSNCISVDFHP-F--G-EFFASGSLDTNLK 126 (818)
Q Consensus 96 ~l~~h~~~V~sv~fsp-d--g-~~Lasgs~Dg~I~ 126 (818)
.++.. ..+.++++.. + | ..|++|-.+|.|-
T Consensus 76 RiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 44432 3355555543 2 2 2688898888764
No 385
>PRK10115 protease 2; Provisional
Probab=96.71 E-value=2.5 Score=51.73 Aligned_cols=191 Identities=5% Similarity=-0.038 Sum_probs=100.0
Q ss_pred CEEEEEEeeCCCcEEEEE-eCC----CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC------CeEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTG-GED----HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS------GTIKLW 86 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatg-s~D----g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D------G~I~IW 86 (818)
.+..+.|+|++ ++|+.+ +.+ ..|++.|+.++..+...-... -..++|.+|++.|+....+ ..|+.+
T Consensus 128 ~l~~~~~Spdg-~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDN-TIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCC-CEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 46678899954 455544 333 358888888776432221111 1469999998866655432 368888
Q ss_pred ECCCC--eEEEEEcCCCCCeE-EEEEeCCCCEEEEEEC---CCcEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003459 87 DLEEA--KIVRTLTGHRSNCI-SVDFHPFGEFFASGSL---DTNLKIWDIR--KKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (818)
Q Consensus 87 Dl~t~--~~v~~l~~h~~~V~-sv~fspdg~~Lasgs~---Dg~I~IwDl~--~~~~i~~l~~h~~~V~~l~fspdg~~L 158 (818)
++.++ +....+........ .+..+.++++++..+. ++.+.+|+.. .+.....+.........+. +.. ..|
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEE
Confidence 99887 33444443333333 2333447877665443 4578898853 3332222222222222222 222 334
Q ss_pred EEEECC----CeEEEEECCCCeEEEEEecC-C-CCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 003459 159 VSGGED----NTVKLWDLTAGKLLHDFKCH-E-GQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 159 ~sgs~D----g~I~IwDl~t~~~i~~~~~h-~-~~I~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
+..+.. ..|...++........+-.+ . ..|..+.+. .+.++++...+|.-+++-+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 433332 23444555421122233333 2 367888887 4456666777776554433
No 386
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.39 Score=50.81 Aligned_cols=232 Identities=13% Similarity=0.118 Sum_probs=136.8
Q ss_pred EEEEEEeeCCCcEEEEEeCCCe-EEEEECCCCceEEEecCCCCC--eEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Q 003459 19 VNCLKIGRKSSRVLVTGGEDHK-VNLWAIGKPNAILSLSGHTSG--IDSVSFDSSEVLVAAGAAS-----GTIKLWDLEE 90 (818)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~-V~lWdl~~~~~i~~l~~h~~~--V~~l~fspdg~~Lasgs~D-----G~I~IWDl~t 90 (818)
-..++|+|...+-++.+-.-|+ ..++|....+....+...++. .-.=.|++||.+|+..-.| |.|-|||...
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3456777766666777766665 466787776665554322211 1123689999999886544 7899999875
Q ss_pred C-eEEEEEcCCCCCeEEEEEeCCCCEEEEEECC------------------CcEEEEECCCCeEEEEEe----cCCCCeE
Q 003459 91 A-KIVRTLTGHRSNCISVDFHPFGEFFASGSLD------------------TNLKIWDIRKKGCIHTYK----GHTRGVN 147 (818)
Q Consensus 91 ~-~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D------------------g~I~IwDl~~~~~i~~l~----~h~~~V~ 147 (818)
+ +.+..+..|.-.-..+.|.+||+.++.+... -.+.+.|..++..+.+.. .+.-.|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 4 4567788888888899999999998877420 123444444555443322 2345688
Q ss_pred EEEEcCCCCEEEEEECCCe-----EEEEECCCCeEEEEEec-------CCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEC
Q 003459 148 AIRFTPDGRWVVSGGEDNT-----VKLWDLTAGKLLHDFKC-------HEGQIQCIDFHPHEFLLATGS-ADRTVKFWDL 214 (818)
Q Consensus 148 ~l~fspdg~~L~sgs~Dg~-----I~IwDl~t~~~i~~~~~-------h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl 214 (818)
.++..+||..++.+-..|. -.+=-.+.++.+.-+.. ....|-+|+.+.+..+++..+ ..+...+||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 8888888875554433221 11111122333333321 123467788877655665555 4557889999
Q ss_pred CCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEE
Q 003459 215 ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVF 253 (818)
Q Consensus 215 ~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vw 253 (818)
.+|..+....... ...+.-. .+-+.++...+.+.++
T Consensus 310 ~tG~vv~~a~l~d--aaGva~~-~~gf~vssg~G~~~~~ 345 (366)
T COG3490 310 ATGAVVSEAALPD--AAGVAAA-KGGFAVSSGQGRIIFY 345 (366)
T ss_pred CCCcEEecccccc--cccceec-cCceEEecCCceEEec
Confidence 9999876543221 1223322 2335555555556555
No 387
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.67 E-value=2.6 Score=51.48 Aligned_cols=282 Identities=14% Similarity=0.135 Sum_probs=153.2
Q ss_pred CCCCEEEEEEeeC--CCc---EEEEEeCCCeEEEEEC-CCCceEEEe--cC--CCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 15 HSSTVNCLKIGRK--SSR---VLVTGGEDHKVNLWAI-GKPNAILSL--SG--HTSGIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 15 H~~~V~~lafsp~--~~~---lLatgs~Dg~V~lWdl-~~~~~i~~l--~~--h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
-...|.|+.++|- +.+ +++.|..+..+.+.-. .+...+... .+ -...|.-.+|-.|..+|+++..||.+.
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~ 608 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL 608 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence 3568999999974 333 8888887766655433 223222221 11 223455666667788999999999987
Q ss_pred EEEC--CCCeEEEEE--cCCCCCeEEEEEeCCCC-------------------------------------------EEE
Q 003459 85 LWDL--EEAKIVRTL--TGHRSNCISVDFHPFGE-------------------------------------------FFA 117 (818)
Q Consensus 85 IWDl--~t~~~v~~l--~~h~~~V~sv~fspdg~-------------------------------------------~La 117 (818)
-|-+ .+++.-..- .-...++.--.|+..+. .++
T Consensus 609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~ 688 (1096)
T KOG1897|consen 609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLA 688 (1096)
T ss_pred EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEE
Confidence 6654 443321110 00111222222222111 222
Q ss_pred EEECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECC--------------CeEEEEECCCCeEEEEE
Q 003459 118 SGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPDGRWVVSGGED--------------NTVKLWDLTAGKLLHDF 181 (818)
Q Consensus 118 sgs~Dg~I~IwDl~~~~--~i~~l~~h~~~V~~l~fspdg~~L~sgs~D--------------g~I~IwDl~t~~~i~~~ 181 (818)
.+ ..+.+.+.-+..-+ .++++. -......+++.+....+.+.+.. ..++++|-.+-+.+...
T Consensus 689 ~~-~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 689 SA-NGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred Ee-cCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 22 22334444332211 122322 22335566776644444433321 24677777766655443
Q ss_pred ecC----CCCEEEEEEeCC-CCEEEEEe----------CCCeEEEEECCCCeEEEEeCC--CCCCeeEEEEeCCCCEEEE
Q 003459 182 KCH----EGQIQCIDFHPH-EFLLATGS----------ADRTVKFWDLETFELIGSAGP--ETSGVRCLTFNPDGRTLLC 244 (818)
Q Consensus 182 ~~h----~~~I~sv~fspd-g~~Lasgs----------~Dg~I~IwDl~t~~~i~~~~~--~~~~I~sl~fspdg~~Las 244 (818)
+.. -..|.++.|..| +.++++|+ ..|.|.+|.+..++.+..... -.+.+.++..- +|++||
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA- 844 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA- 844 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE-
Confidence 321 123566678888 77888876 247788888776333322211 13445555432 465554
Q ss_pred EECCCEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 245 GLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 245 gs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
|-...+++|+|...+.+..-.....++..+.. -.|..+++|.--+.+.+--.+..+
T Consensus 845 ~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 845 GINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred ecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 54668999999999776665555555555553 578888888877777666555544
No 388
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.66 E-value=0.0019 Score=65.70 Aligned_cols=141 Identities=15% Similarity=0.165 Sum_probs=81.3
Q ss_pred EEEEEECCCeEEEEECCCCeEEE-EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEE-EEecCCCCeEEE-
Q 003459 73 LVAAGAASGTIKLWDLEEAKIVR-TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAI- 149 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v~-~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~-~l~~h~~~V~~l- 149 (818)
.+...+.||.|.-+++...+... .-..|... .....-+..+++|+.+|.|++|......... .+..-...|.++
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 34455677888777765433211 11112111 1111234679999999999999876322111 111112223322
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-CCEEEEEEeCCCCEEEEE--eCCCeEEEEECCC
Q 003459 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-GQIQCIDFHPHEFLLATG--SADRTVKFWDLET 216 (818)
Q Consensus 150 ~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-~~I~sv~fspdg~~Lasg--s~Dg~I~IwDl~t 216 (818)
.-..++.+.++++.||.|+.|++.-++.+.....|. .++........+.+++++ +.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 222356688999999999999999888777766666 444444444445555555 5566666666653
No 389
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.64 E-value=0.0053 Score=42.39 Aligned_cols=39 Identities=38% Similarity=0.687 Sum_probs=34.2
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
++.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778899999999999999999999999999996
No 390
>PRK10115 protease 2; Provisional
Probab=96.64 E-value=2.6 Score=51.55 Aligned_cols=192 Identities=11% Similarity=0.037 Sum_probs=101.6
Q ss_pred CeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC------CcEEEEE
Q 003459 61 GIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD------TNLKIWD 129 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D------g~I~IwD 129 (818)
.+..+.|+|++++|+.+... ..|++.|+.+|..+...-.... ..++|.++++.|+....+ ..|+.|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999988876432 3688999988864322211211 469999999876665432 3688888
Q ss_pred CCCC--eEEEEEecCCCCeE-EEEEcCCCCEEEEEEC---CCeEEEEECC--CCeEEEEEecCCCCEEEEEEeCCCCEEE
Q 003459 130 IRKK--GCIHTYKGHTRGVN-AIRFTPDGRWVVSGGE---DNTVKLWDLT--AGKLLHDFKCHEGQIQCIDFHPHEFLLA 201 (818)
Q Consensus 130 l~~~--~~i~~l~~h~~~V~-~l~fspdg~~L~sgs~---Dg~I~IwDl~--t~~~i~~~~~h~~~I~sv~fspdg~~La 201 (818)
+.++ +-...+........ .+..+.++++++..+. ++.+.+|+.. .+.....+....+....+. +..+.+++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 8877 33334443333333 3333448887775554 3568888853 3432222222222333332 33333333
Q ss_pred EEeCC---CeEEEEECCC-CeEEEEeCC-CCCCeeEEEEeCCCCEEEEEECCC---EEEEEec
Q 003459 202 TGSAD---RTVKFWDLET-FELIGSAGP-ETSGVRCLTFNPDGRTLLCGLHES---LKVFSWE 256 (818)
Q Consensus 202 sgs~D---g~I~IwDl~t-~~~i~~~~~-~~~~I~sl~fspdg~~Lasgs~d~---I~Vwd~~ 256 (818)
....+ ..|...++.. ++....+.. ....|..+.+..+ .++++...++ +.+++..
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~ 346 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRK 346 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCC
Confidence 33222 2344445542 222222222 2346788888733 3444444443 4444443
No 391
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.63 E-value=0.0063 Score=41.98 Aligned_cols=39 Identities=44% Similarity=0.892 Sum_probs=34.7
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 133 KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 133 ~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
++++..+..|...|.++.|.+++.++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356677778899999999999999999999999999996
No 392
>PRK13684 Ycf48-like protein; Provisional
Probab=96.60 E-value=1.7 Score=48.31 Aligned_cols=277 Identities=10% Similarity=0.063 Sum_probs=136.4
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-CceEEEec----CCCCCeEEEEEcCCCCEEEEEEC
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLS----GHTSGIDSVSFDSSEVLVAAGAA 79 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~-~~~i~~l~----~h~~~V~~l~fspdg~~Lasgs~ 79 (818)
..|+...+ .-...+.+|+|.. ..+-+++|. +|.| |...+ ++.-.... .....+.++.|.++ ..+++ +.
T Consensus 35 ~~W~~~~~-~~~~~l~~v~F~d-~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~ 107 (334)
T PRK13684 35 SPWQVIDL-PTEANLLDIAFTD-PNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQ 107 (334)
T ss_pred CCcEEEec-CCCCceEEEEEeC-CCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CC
Confidence 34665554 3356899999974 455566554 4543 33222 22222111 12234778888643 34444 44
Q ss_pred CCeEEEEECCCCeEEEEEc---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCC
Q 003459 80 SGTIKLWDLEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDG 155 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~---~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~-l~~h~~~V~~l~fspdg 155 (818)
.|.|..- -+.|+....+. ........+.....+..++ ++..|.|+.=+ +.++.-.. .......+.++.+.+++
T Consensus 108 ~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g 184 (334)
T PRK13684 108 PSLLLHT-TDGGKNWTRIPLSEKLPGSPYLITALGPGTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDG 184 (334)
T ss_pred CceEEEE-CCCCCCCeEccCCcCCCCCceEEEEECCCccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCC
Confidence 5543332 12233222221 1111222222222232333 33455443322 22222111 12224568899999988
Q ss_pred CEEEEEECCCeEEE-EECCCCeEEEEEe-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC----CCCC
Q 003459 156 RWVVSGGEDNTVKL-WDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP----ETSG 229 (818)
Q Consensus 156 ~~L~sgs~Dg~I~I-wDl~t~~~i~~~~-~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~----~~~~ 229 (818)
.+++++ ..|.+.. +| ..++...... .....++++.+.+++..+++| ..|.+.+=..+.+..-..... ....
T Consensus 185 ~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~ 261 (334)
T PRK13684 185 KYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYG 261 (334)
T ss_pred eEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccc
Confidence 766554 5665543 22 2222222222 234678999999999887766 467665433444332221111 2245
Q ss_pred eeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccc---cccceeeeeecCCCEEEEEEcCCeEEEEE
Q 003459 230 VRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV---GWSRLSDLNVHEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 230 I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~---~~~~v~~l~~~~g~lLatg~~Dg~V~IWd 295 (818)
+..+.|.+++..+++|..+ ..+...+.++....... ....+..+.+.+++.....+..|.|--|+
T Consensus 262 l~~v~~~~~~~~~~~G~~G-~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~ 329 (334)
T PRK13684 262 YLDLAYRTPGEIWAGGGNG-TLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYV 329 (334)
T ss_pred eeeEEEcCCCCEEEEcCCC-eEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEec
Confidence 7889999988877777544 44555555554443321 11234444444444445566777776664
No 393
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.58 E-value=0.093 Score=60.31 Aligned_cols=150 Identities=17% Similarity=0.285 Sum_probs=97.5
Q ss_pred CCeEEEEEeCCCCEEEEEE---CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC----CCEEEEEECCCeEEEEECC-
Q 003459 102 SNCISVDFHPFGEFFASGS---LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD----GRWVVSGGEDNTVKLWDLT- 173 (818)
Q Consensus 102 ~~V~sv~fspdg~~Lasgs---~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd----g~~L~sgs~Dg~I~IwDl~- 173 (818)
.++..++|. ||+.++-.. .+|.+++=| ...+..| ..|..+.|.|- -..|++.-....|.+|-+-
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 468889998 566544332 244444332 2233333 45889999983 3356666678899999875
Q ss_pred ----CCeEEEEEecCCC-----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEE
Q 003459 174 ----AGKLLHDFKCHEG-----QIQCIDFHPHEFLLATGSADRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLL 243 (818)
Q Consensus 174 ----t~~~i~~~~~h~~-----~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~-~i~~~~~~~~~I~sl~fspdg~~La 243 (818)
.++.+..-.++-+ --..+.|||....|++-.....-.+++++... .+..--...+-|.|.+|..||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 2333333222211 12567899999998887776666677765432 2222224467799999999999999
Q ss_pred EEECCCEEEEEecCCc
Q 003459 244 CGLHESLKVFSWEPIR 259 (818)
Q Consensus 244 sgs~d~I~Vwd~~~~~ 259 (818)
++-...++-|-|+..+
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 9988888888888654
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.56 E-value=0.38 Score=58.99 Aligned_cols=112 Identities=15% Similarity=0.193 Sum_probs=77.1
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEcCCCC--------CeEEEEEeC----------------CCCEEEEEECCCcEE
Q 003459 71 EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS--------NCISVDFHP----------------FGEFFASGSLDTNLK 126 (818)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~--------~V~sv~fsp----------------dg~~Lasgs~Dg~I~ 126 (818)
+..|+.++.++.|.-.|..+|+.+..+..... .+..+.+.. .+..++.++.|+.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 45677778889999999999999888763221 122333321 234788899999999
Q ss_pred EEECCCCeEEEEEecCCCCeE-------------EEEEcC--CCCEEEEEEC----------CCeEEEEECCCCeEEEEE
Q 003459 127 IWDIRKKGCIHTYKGHTRGVN-------------AIRFTP--DGRWVVSGGE----------DNTVKLWDLTAGKLLHDF 181 (818)
Q Consensus 127 IwDl~~~~~i~~l~~h~~~V~-------------~l~fsp--dg~~L~sgs~----------Dg~I~IwDl~t~~~i~~~ 181 (818)
-.|.++|+.+..+.. .+.|. .+.-.| .+..+++|+. +|.|+-+|.++|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999999887642 22111 111122 2345666643 688999999999999988
Q ss_pred ec
Q 003459 182 KC 183 (818)
Q Consensus 182 ~~ 183 (818)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 73
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.37 E-value=0.45 Score=48.98 Aligned_cols=211 Identities=17% Similarity=0.178 Sum_probs=120.1
Q ss_pred EEeeCCCcEEEEEeCCCeEEEEECCCCceEE-EecCCCCCeEEEEEcCCC--CEEEEE-ECCCeEEEEE--CCCCeEEEE
Q 003459 23 KIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSFDSSE--VLVAAG-AASGTIKLWD--LEEAKIVRT 96 (818)
Q Consensus 23 afsp~~~~lLatgs~Dg~V~lWdl~~~~~i~-~l~~h~~~V~~l~fspdg--~~Lasg-s~DG~I~IWD--l~t~~~v~~ 96 (818)
.|....+.++.+--..|.|.-||+.+.+... .+.+ .++.++.+--.+ ..++++ +..-.|-=|| .+..+..++
T Consensus 21 ~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~--p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t 98 (310)
T KOG4499|consen 21 HWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEG--PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRT 98 (310)
T ss_pred ceEEecceEEEEEeccCceehhhhhhhheEEEEEec--CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeee
Confidence 3444455667776677888889986644332 2222 223333342111 223333 2223344577 334445555
Q ss_pred EcC-----CCCCeEEEEEeCCCCEEEEEECC---------CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-
Q 003459 97 LTG-----HRSNCISVDFHPFGEFFASGSLD---------TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG- 161 (818)
Q Consensus 97 l~~-----h~~~V~sv~fspdg~~Lasgs~D---------g~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sg- 161 (818)
+.. .......-..+|+|++++-.-.| |.++.|-... .+..+...-.--+.++|+.+.+.++..
T Consensus 99 ~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iD 176 (310)
T KOG4499|consen 99 LFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYID 176 (310)
T ss_pred ccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEc
Confidence 321 12345566678999984432222 3455554321 122222222334568888877766544
Q ss_pred ECCCeEEEEE--CCCC-----eEEEEEec---CC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCe
Q 003459 162 GEDNTVKLWD--LTAG-----KLLHDFKC---HE-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV 230 (818)
Q Consensus 162 s~Dg~I~IwD--l~t~-----~~i~~~~~---h~-~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I 230 (818)
+.+-.|.-|| +.+| +.+..++. .+ -.--.++..-.|++.++.-..++|..+|..+|+.+..+.-....|
T Consensus 177 sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qi 256 (310)
T KOG4499|consen 177 SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQI 256 (310)
T ss_pred cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCce
Confidence 4455676777 5554 33443332 11 112344556678888888888999999999999999998888999
Q ss_pred eEEEEeC
Q 003459 231 RCLTFNP 237 (818)
Q Consensus 231 ~sl~fsp 237 (818)
++++|--
T Consensus 257 tsccFgG 263 (310)
T KOG4499|consen 257 TSCCFGG 263 (310)
T ss_pred EEEEecC
Confidence 9999964
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.35 E-value=2.1 Score=46.69 Aligned_cols=222 Identities=13% Similarity=0.147 Sum_probs=107.5
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-
Q 003459 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS---GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV- 94 (818)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~---~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v- 94 (818)
..+|.|.. ...+++| ..| +.+...+.++.-..+. .-......+....++..++ ++..|.|+.= .+.|+.-
T Consensus 64 l~~I~f~~--~~g~ivG-~~g-~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~ 137 (302)
T PF14870_consen 64 LNSISFDG--NEGWIVG-EPG-LLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQ 137 (302)
T ss_dssp EEEEEEET--TEEEEEE-ETT-EEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEE
T ss_pred EEEEEecC--CceEEEc-CCc-eEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCee
Confidence 56677753 3445544 445 3344434444433332 1122334444433443333 3455554332 2333322
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-
Q 003459 95 RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT- 173 (818)
Q Consensus 95 ~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~- 173 (818)
.........+..+..+++|.+++++.......-||--.......-..-...|..|.|.|++...+.+ ..|.|++=+..
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 2234455778889999999999888665555678754332232233346789999999998765544 89999988722
Q ss_pred CCeEEEE----EecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE---EEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 174 AGKLLHD----FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL---IGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 174 t~~~i~~----~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~---i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
....... .......+..++|.+++...++|+ .|.+ +...+.|+. ......-...++.+.|..+.+-++.|.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 2222211 111223478999999887777766 4433 344454443 322333355688999988878888886
Q ss_pred CCC
Q 003459 247 HES 249 (818)
Q Consensus 247 ~d~ 249 (818)
++-
T Consensus 295 ~G~ 297 (302)
T PF14870_consen 295 DGV 297 (302)
T ss_dssp TTE
T ss_pred CcE
Confidence 554
No 397
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.31 E-value=0.26 Score=45.21 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=69.0
Q ss_pred eEEEEEcC---CC-CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEE
Q 003459 62 IDSVSFDS---SE-VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (818)
Q Consensus 62 V~~l~fsp---dg-~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~ 137 (818)
|+++++.. +| +.|++|+.|..|++|+- ...+..+.. ...|.+++-... ..|+.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 55666643 33 57999999999999984 356667664 455777766654 67999999999999985 34455
Q ss_pred EEecCCCCeEEEEEcC-C--C-CEEEEEECCCeEE
Q 003459 138 TYKGHTRGVNAIRFTP-D--G-RWVVSGGEDNTVK 168 (818)
Q Consensus 138 ~l~~h~~~V~~l~fsp-d--g-~~L~sgs~Dg~I~ 168 (818)
..+... .+.++++.. + | .-|++|-.+|.|-
T Consensus 76 RiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 555433 366666654 2 2 2588888888764
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.24 E-value=1.4 Score=49.67 Aligned_cols=217 Identities=16% Similarity=0.202 Sum_probs=105.9
Q ss_pred CcEEEEEe-CCCeEEEEECC----CCceEEEecC---CC----CCeEEEEEcCCCCEEEEEEC------CCeEEEEECCC
Q 003459 29 SRVLVTGG-EDHKVNLWAIG----KPNAILSLSG---HT----SGIDSVSFDSSEVLVAAGAA------SGTIKLWDLEE 90 (818)
Q Consensus 29 ~~lLatgs-~Dg~V~lWdl~----~~~~i~~l~~---h~----~~V~~l~fspdg~~Lasgs~------DG~I~IWDl~t 90 (818)
.++|+..+ ..++|+|.|+. .++..+.+.. +. ..-..+..-|+|..++++-. -|-+.++|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 44555554 78899999986 3445555542 11 11222334578888777522 35688899888
Q ss_pred CeEEEEEcCC---CCCeEEEEEeCCCCEEEEEEC--------------------CCcEEEEECCCCeEEEEEecCCC--C
Q 003459 91 AKIVRTLTGH---RSNCISVDFHPFGEFFASGSL--------------------DTNLKIWDIRKKGCIHTYKGHTR--G 145 (818)
Q Consensus 91 ~~~v~~l~~h---~~~V~sv~fspdg~~Lasgs~--------------------Dg~I~IwDl~~~~~i~~l~~h~~--~ 145 (818)
.++....... ...-..+.|.|..+.+++... ...+.+||+.+.+.++++.--.. .
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~ 246 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQM 246 (461)
T ss_dssp --EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEE
T ss_pred ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCc
Confidence 8887776542 234567888998888888653 24799999999999999874332 3
Q ss_pred eEEEEEcC--CCCE-EEEEECCCeEEEEEC-CCCe----EEEEEecC-----------------CCCEEEEEEeCCCCEE
Q 003459 146 VNAIRFTP--DGRW-VVSGGEDNTVKLWDL-TAGK----LLHDFKCH-----------------EGQIQCIDFHPHEFLL 200 (818)
Q Consensus 146 V~~l~fsp--dg~~-L~sgs~Dg~I~IwDl-~t~~----~i~~~~~h-----------------~~~I~sv~fspdg~~L 200 (818)
...+.|.. +..+ ++.+.-.+.|..|-- ..++ .+-++... ..-|+.|..+.|.++|
T Consensus 247 pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfL 326 (461)
T PF05694_consen 247 PLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFL 326 (461)
T ss_dssp EEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EE
T ss_pred eEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEE
Confidence 44667754 3343 333334455555433 3332 12222110 2447899999999888
Q ss_pred EEEe-CCCeEEEEECCC---CeEEEEeC----------------CCCCCeeEEEEeCCCCEEEEE
Q 003459 201 ATGS-ADRTVKFWDLET---FELIGSAG----------------PETSGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 201 asgs-~Dg~I~IwDl~t---~~~i~~~~----------------~~~~~I~sl~fspdg~~Lasg 245 (818)
+..+ .+|.|+.||+.. -+++.+.. .-.+...-+..|-||+.|++.
T Consensus 327 Yvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 327 YVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp EEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred EEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 7776 589999999975 23333321 112334667788888888765
No 399
>PHA03098 kelch-like protein; Provisional
Probab=96.22 E-value=0.15 Score=60.38 Aligned_cols=183 Identities=13% Similarity=0.120 Sum_probs=91.2
Q ss_pred CCcEEEEEeCCC------eEEEEECCCCceEEEecC---CCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeE
Q 003459 28 SSRVLVTGGEDH------KVNLWAIGKPNAILSLSG---HTSGIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEEAKI 93 (818)
Q Consensus 28 ~~~lLatgs~Dg------~V~lWdl~~~~~i~~l~~---h~~~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~t~~~ 93 (818)
++.+++.||.++ .+..||..+.+... +.. .......+. -++.+++.||.+ ..+..||..+++-
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 456777777543 46778876655432 221 111122222 256677777765 3577888876643
Q ss_pred EEE--EcCCCCCeEEEEEeCCCCEEEEEECC------CcEEEEECCCCeEEEEEecCCC-CeEEEEEcCCCCEEEEEECC
Q 003459 94 VRT--LTGHRSNCISVDFHPFGEFFASGSLD------TNLKIWDIRKKGCIHTYKGHTR-GVNAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 94 v~~--l~~h~~~V~sv~fspdg~~Lasgs~D------g~I~IwDl~~~~~i~~l~~h~~-~V~~l~fspdg~~L~sgs~D 164 (818)
... +...... .+++. -++..++.|+.+ ..+..||+.+.+....-..... .-.+++. -++..++.||.+
T Consensus 371 ~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 447 (534)
T PHA03098 371 REEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGIS 447 (534)
T ss_pred eeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCcc
Confidence 221 1111111 12222 246666666632 3588899887654322110000 0112222 256666666643
Q ss_pred --------CeEEEEECCCCeEEEE--EecCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCe
Q 003459 165 --------NTVKLWDLTAGKLLHD--FKCHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFE 218 (818)
Q Consensus 165 --------g~I~IwDl~t~~~i~~--~~~h~~~I~sv~fspdg~~Lasgs~D-----g~I~IwDl~t~~ 218 (818)
..+.+||..+++-... +.........+. -++.+++.|+.+ ..+.+||..+.+
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2388899876543221 111111111222 266777777754 468888877654
No 400
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.085 Score=64.15 Aligned_cols=99 Identities=20% Similarity=0.359 Sum_probs=74.2
Q ss_pred cEEEEEeCCCeEEEEECCCC-ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEE-
Q 003459 30 RVLVTGGEDHKVNLWAIGKP-NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISV- 107 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~-~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv- 107 (818)
..++.|+..|.+-..|.... .....-..-.++|++++|+.+|.+++.|-.+|.|.+||+..+++++.+..|..+...+
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 35788888888888887432 1112222346799999999999999999999999999999999999988776665544
Q ss_pred --EEeCCCCEEEEEECCCcEEEEEC
Q 003459 108 --DFHPFGEFFASGSLDTNLKIWDI 130 (818)
Q Consensus 108 --~fspdg~~Lasgs~Dg~I~IwDl 130 (818)
.+..++..++++...|. +|.+
T Consensus 180 ~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc--eEEE
Confidence 44455667888877776 4543
No 401
>PRK13684 Ycf48-like protein; Provisional
Probab=95.74 E-value=2.9 Score=46.41 Aligned_cols=149 Identities=11% Similarity=0.091 Sum_probs=87.4
Q ss_pred CCCeEEEEEeCCCCEEEEEECCCcEEEE-ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 101 RSNCISVDFHPFGEFFASGSLDTNLKIW-DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH 179 (818)
Q Consensus 101 ~~~V~sv~fspdg~~Lasgs~Dg~I~Iw-Dl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~ 179 (818)
...+..+.+.+++.+++++ ..|.++.- |-...........-...++++.+.++++.++++ ..|.+++=....|..-.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 4568899999988766655 45655432 221111222222334678999999998876654 56776543344444333
Q ss_pred EEecC----CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe---CCCCCCeeEEEEeCCCCEEEEEECCCEEE
Q 003459 180 DFKCH----EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA---GPETSGVRCLTFNPDGRTLLCGLHESLKV 252 (818)
Q Consensus 180 ~~~~h----~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~---~~~~~~I~sl~fspdg~~Lasgs~d~I~V 252 (818)
....+ ...+..+.+.+++.++++| .+|.+. .....++.-... .......+.+.|..+++.+++|..+.|-.
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~ 327 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR 327 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence 22211 2357889999988766655 466554 344444332222 22234578888888888888887665544
Q ss_pred E
Q 003459 253 F 253 (818)
Q Consensus 253 w 253 (818)
|
T Consensus 328 ~ 328 (334)
T PRK13684 328 Y 328 (334)
T ss_pred e
Confidence 3
No 402
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.73 E-value=3 Score=44.39 Aligned_cols=144 Identities=13% Similarity=0.083 Sum_probs=89.4
Q ss_pred CeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEE-CCCCeEE
Q 003459 61 GIDSVSFDSSEVLVAAGA---ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD-IRKKGCI 136 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs---~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwD-l~~~~~i 136 (818)
.+...++++++..++... ....++++.. +.....+. ....+..-.|.+++...++...+....++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877765 3344555543 33333322 223677889999987777766666666663 2333221
Q ss_pred -EEEecC--CCCeEEEEEcCCCCEEEEEE---CCCeEEEEECC---CC------eEEEEEecCCCCEEEEEEeCCCCEEE
Q 003459 137 -HTYKGH--TRGVNAIRFTPDGRWVVSGG---EDNTVKLWDLT---AG------KLLHDFKCHEGQIQCIDFHPHEFLLA 201 (818)
Q Consensus 137 -~~l~~h--~~~V~~l~fspdg~~L~sgs---~Dg~I~IwDl~---t~------~~i~~~~~h~~~I~sv~fspdg~~La 201 (818)
...... ...|..+.++|||..++... .++.|.+--+. .+ ..+.........+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 112211 12799999999999988766 34667766442 22 11111112346789999999998887
Q ss_pred EEeCCC
Q 003459 202 TGSADR 207 (818)
Q Consensus 202 sgs~Dg 207 (818)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 776544
No 403
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.68 E-value=3.6 Score=46.23 Aligned_cols=151 Identities=11% Similarity=0.122 Sum_probs=83.5
Q ss_pred eeEEEEecC--CCCEEEEEEeeCCCcEEEEEe-----------CCC-eEEEEECCC--Cc--eEEEecCCCCCeEEEEEc
Q 003459 7 YKLQEFVAH--SSTVNCLKIGRKSSRVLVTGG-----------EDH-KVNLWAIGK--PN--AILSLSGHTSGIDSVSFD 68 (818)
Q Consensus 7 ~kl~~~~~H--~~~V~~lafsp~~~~lLatgs-----------~Dg-~V~lWdl~~--~~--~i~~l~~h~~~V~~l~fs 68 (818)
+++.-+... -.....|+|.+ .++++++-. ..+ .|.+++-.+ ++ ....+...-.....++|.
T Consensus 2 f~~~l~A~~p~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~ 80 (367)
T TIGR02604 2 FKVTLFAAEPLLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA 80 (367)
T ss_pred cEEEEEECCCccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe
Confidence 344444433 45677899998 566655542 223 777776432 32 223343333456889999
Q ss_pred CCCCEEEEEECCCeEEEE-ECCC-----Ce--EE-EEEcC----CCCCeEEEEEeCCCCEEEEEEC--------------
Q 003459 69 SSEVLVAAGAASGTIKLW-DLEE-----AK--IV-RTLTG----HRSNCISVDFHPFGEFFASGSL-------------- 121 (818)
Q Consensus 69 pdg~~Lasgs~DG~I~IW-Dl~t-----~~--~v-~~l~~----h~~~V~sv~fspdg~~Lasgs~-------------- 121 (818)
+++ ++ +++.. .|..| |... ++ .+ ..+.. +......+.|.|+|.+.++-+.
T Consensus 81 ~~G-ly-V~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 81 VGG-VY-VATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred cCC-EE-EeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccC
Confidence 888 44 44444 35444 5431 12 11 22322 1234678999999986554431
Q ss_pred -----CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003459 122 -----DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 122 -----Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs 162 (818)
.|.|.-+|...++....-.++ .....++|+++|+++++-.
T Consensus 158 ~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 145666666554432222233 3356899999998876644
No 404
>PHA03098 kelch-like protein; Provisional
Probab=95.62 E-value=0.31 Score=57.59 Aligned_cols=146 Identities=13% Similarity=0.118 Sum_probs=72.7
Q ss_pred CCCEEEEEECCC------eEEEEECCCCeEEEEEcC---CCCCeEEEEEeCCCCEEEEEECC-----CcEEEEECCCCeE
Q 003459 70 SEVLVAAGAASG------TIKLWDLEEAKIVRTLTG---HRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGC 135 (818)
Q Consensus 70 dg~~Lasgs~DG------~I~IWDl~t~~~v~~l~~---h~~~V~sv~fspdg~~Lasgs~D-----g~I~IwDl~~~~~ 135 (818)
++.+++.|+.++ .+..||..+.+... +.. ..... +++. -++..++.|+.+ ..+..||..+++.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNP-GVTV-FNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccc-eEEE-ECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 455666776542 57788887765432 221 11112 2222 256677777765 3577888876654
Q ss_pred EEEEec-CCCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC--
Q 003459 136 IHTYKG-HTRGVNAIRFTPDGRWVVSGGED------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD-- 206 (818)
Q Consensus 136 i~~l~~-h~~~V~~l~fspdg~~L~sgs~D------g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D-- 206 (818)
...-.. +...-.+++. -+++.++.||.+ ..+..||..+++-...-..........+...++.+++.|+.+
T Consensus 371 ~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~ 449 (534)
T PHA03098 371 REEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI 449 (534)
T ss_pred eeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence 321110 1111112222 256677777632 358889987654222111000111111222356677777643
Q ss_pred ------CeEEEEECCCCeE
Q 003459 207 ------RTVKFWDLETFEL 219 (818)
Q Consensus 207 ------g~I~IwDl~t~~~ 219 (818)
..+.+||..+.+-
T Consensus 450 ~~~~~~~~v~~yd~~~~~W 468 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNKW 468 (534)
T ss_pred CCCcccceEEEecCCCCce
Confidence 2388899876543
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.58 E-value=3.3 Score=44.00 Aligned_cols=144 Identities=16% Similarity=0.115 Sum_probs=89.2
Q ss_pred CeEEEEEeCCCCEEEEEE---CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE-CCCCeEE
Q 003459 103 NCISVDFHPFGEFFASGS---LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD-LTAGKLL 178 (818)
Q Consensus 103 ~V~sv~fspdg~~Lasgs---~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD-l~t~~~i 178 (818)
.+.+.++++++..++... ....++++... ....... ....+..-.|++++...+....+...+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999877765 33455555543 3222221 223678889999977666655556666663 3333222
Q ss_pred -EEEec--CCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECC---CC------eEEEEeCCCCCCeeEEEEeCCCCEEE
Q 003459 179 -HDFKC--HEGQIQCIDFHPHEFLLATGS---ADRTVKFWDLE---TF------ELIGSAGPETSGVRCLTFNPDGRTLL 243 (818)
Q Consensus 179 -~~~~~--h~~~I~sv~fspdg~~Lasgs---~Dg~I~IwDl~---t~------~~i~~~~~~~~~I~sl~fspdg~~La 243 (818)
..... ..+.|..+.++|||..++... .++.|.+--+. .+ ..+.........+..+.|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 12221 122899999999999887766 35677776543 23 11122223356789999999998888
Q ss_pred EEECCC
Q 003459 244 CGLHES 249 (818)
Q Consensus 244 sgs~d~ 249 (818)
.+....
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 765443
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.56 E-value=1.3 Score=45.86 Aligned_cols=134 Identities=17% Similarity=0.208 Sum_probs=84.2
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-C---------CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEE-EECCCcEEE
Q 003459 59 TSGIDSVSFDSSEVLVAAGAA-S---------GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFAS-GSLDTNLKI 127 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~-D---------G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Las-gs~Dg~I~I 127 (818)
....+.-..+|+|+++ .|.. | |.++.|-.. ..+..+...-.--..++|+.+.+.+.. -+.+-.|.-
T Consensus 108 knR~NDgkvdP~Gryy-~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYY-GGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCcee-eeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 3455666778999984 4432 2 333333321 111111111222356889877775544 455678877
Q ss_pred EE--CCCCe-----EEEEEecC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeC
Q 003459 128 WD--IRKKG-----CIHTYKGH----TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP 195 (818)
Q Consensus 128 wD--l~~~~-----~i~~l~~h----~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fsp 195 (818)
|| ..+|. .+..++.. .-.--.++...+|++.+++-..|+|...|..+|+.+.+++.....|+|++|--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 87 44443 33333321 11122455566889889998999999999999999999998889999999964
No 407
>PHA02790 Kelch-like protein; Provisional
Probab=95.52 E-value=0.56 Score=54.80 Aligned_cols=180 Identities=13% Similarity=0.054 Sum_probs=88.1
Q ss_pred CCcEEEEEeCCC-----eEEEEECCCCceEEEecCC--CCCeEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEE--
Q 003459 28 SSRVLVTGGEDH-----KVNLWAIGKPNAILSLSGH--TSGIDSVSFDSSEVLVAAGAAS--GTIKLWDLEEAKIVRT-- 96 (818)
Q Consensus 28 ~~~lLatgs~Dg-----~V~lWdl~~~~~i~~l~~h--~~~V~~l~fspdg~~Lasgs~D--G~I~IWDl~t~~~v~~-- 96 (818)
++.++++||.++ .+..||..+++....-.-. ......+. -++.+.+.|+.+ ..+..||..+++-...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 556778887653 4667887665543321111 11111222 366677777754 3578888766543221
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECCC---cEEEEECCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGSLDT---NLKIWDIRKKGCIHTYKG--HTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs~Dg---~I~IwDl~~~~~i~~l~~--h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
+....... +++ .-+|...+.|+.++ .+..||..+.+....-.. ..... +++ .-+|+..+.| |.+.+||
T Consensus 349 l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~yd 421 (480)
T PHA02790 349 LLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYC 421 (480)
T ss_pred CCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEec
Confidence 11111111 222 22567777776553 467888877654332111 11111 222 2245555555 3567888
Q ss_pred CCCCeEEE--EEecCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCe
Q 003459 172 LTAGKLLH--DFKCHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFE 218 (818)
Q Consensus 172 l~t~~~i~--~~~~h~~~I~sv~fspdg~~Lasgs~D-----g~I~IwDl~t~~ 218 (818)
..+++-.. .+....... +++ .-++.+.++|+.+ ..+..||..+.+
T Consensus 422 p~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 87654221 111111112 222 2366777887754 246666665543
No 408
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=0.047 Score=66.22 Aligned_cols=100 Identities=21% Similarity=0.371 Sum_probs=76.3
Q ss_pred CCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEE
Q 003459 113 GEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCI 191 (818)
Q Consensus 113 g~~Lasgs~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv 191 (818)
+..++.|+..|.|-..|.... .+...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..|..+.+++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 557888999999999887653 1122222346789999999999999999999999999999999999888776665554
Q ss_pred E---EeCCCCEEEEEeCCCeEEEEEC
Q 003459 192 D---FHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 192 ~---fspdg~~Lasgs~Dg~I~IwDl 214 (818)
- +..++..++++...|. +|.+
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4 4445667888877775 5553
No 409
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.30 E-value=0.012 Score=69.66 Aligned_cols=174 Identities=19% Similarity=0.288 Sum_probs=102.2
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceEEEe-----cCCCCCeEEEEEcC---CCCEEEEEECCCe
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSL-----SGHTSGIDSVSFDS---SEVLVAAGAASGT 82 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~--~~~~i~~l-----~~h~~~V~~l~fsp---dg~~Lasgs~DG~ 82 (818)
++..+.|-.++|...+...+. ..-|.+.||++. .|+....+ ......+.-+.|.| +..++..+-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 455667777777542222222 333778999873 33332222 23334555666654 6678888888999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs 162 (818)
|++.++.+... ..+.+|...+..++|-..|-.++.+ ++|||..|+.++
T Consensus 207 i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 207 IRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAWAI 254 (1283)
T ss_pred eeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEEee
Confidence 99888765433 4455688777777766544222211 677777777777
Q ss_pred CCCeEEEEECC-----CCeEEEEEecCC-CCEEEEEEeCCC---------CEEEEEe-CCCeEEEEECCCCeEE
Q 003459 163 EDNTVKLWDLT-----AGKLLHDFKCHE-GQIQCIDFHPHE---------FLLATGS-ADRTVKFWDLETFELI 220 (818)
Q Consensus 163 ~Dg~I~IwDl~-----t~~~i~~~~~h~-~~I~sv~fspdg---------~~Lasgs-~Dg~I~IwDl~t~~~i 220 (818)
.||.++.|.+. .-.+++.++.|+ .+-.|.-|+.+. .++++++ .+..+++|....++++
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 77776666543 234555666665 233333344322 1334443 4567999998887776
No 410
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.17 E-value=7 Score=44.33 Aligned_cols=188 Identities=12% Similarity=0.112 Sum_probs=93.7
Q ss_pred CCCEEEEEE-CCCeEEEEECCC----CeEEEEEcC---CC----CCeEEEEEeCCCCEEEEEE--C----CCcEEEEECC
Q 003459 70 SEVLVAAGA-ASGTIKLWDLEE----AKIVRTLTG---HR----SNCISVDFHPFGEFFASGS--L----DTNLKIWDIR 131 (818)
Q Consensus 70 dg~~Lasgs-~DG~I~IWDl~t----~~~v~~l~~---h~----~~V~sv~fspdg~~Lasgs--~----Dg~I~IwDl~ 131 (818)
+.++|+..+ .++.|+|+|+.+ .+..+++.. +. ..-..+..-|+|+.++++- . -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 455666665 688999999873 355555542 11 1223344457888877752 2 2578899988
Q ss_pred CCeEEEEEecC---CCCeEEEEEcCCCCEEEEEEC--------------------CCeEEEEECCCCeEEEEEecCCC--
Q 003459 132 KKGCIHTYKGH---TRGVNAIRFTPDGRWVVSGGE--------------------DNTVKLWDLTAGKLLHDFKCHEG-- 186 (818)
Q Consensus 132 ~~~~i~~l~~h---~~~V~~l~fspdg~~L~sgs~--------------------Dg~I~IwDl~t~~~i~~~~~h~~-- 186 (818)
+.+.+..+... ...-+.+.|.|..+.+++... ..++.+||+.+.+.++++.-...
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 88877777542 234567888898888888653 35799999999999999885432
Q ss_pred CEEEEEEeCC--CCE-EEEEeCCCeEEEEEC-CCCe----EEEEeCCC-----------------CCCeeEEEEeCCCCE
Q 003459 187 QIQCIDFHPH--EFL-LATGSADRTVKFWDL-ETFE----LIGSAGPE-----------------TSGVRCLTFNPDGRT 241 (818)
Q Consensus 187 ~I~sv~fspd--g~~-Lasgs~Dg~I~IwDl-~t~~----~i~~~~~~-----------------~~~I~sl~fspdg~~ 241 (818)
....+.|..+ ..+ ++.+-....|..|-- +.++ .+..+... ..-|+.|.+|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 2446666654 332 222223445554432 3332 22222211 234799999999999
Q ss_pred EEEEEC--CCEEEEEecC
Q 003459 242 LLCGLH--ESLKVFSWEP 257 (818)
Q Consensus 242 Lasgs~--d~I~Vwd~~~ 257 (818)
|+++.- +.++.||+..
T Consensus 326 LYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EEEEETTTTEEEEEE-SS
T ss_pred EEEEcccCCcEEEEecCC
Confidence 998864 4599999864
No 411
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.09 E-value=8 Score=44.09 Aligned_cols=42 Identities=14% Similarity=-0.016 Sum_probs=35.5
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCC
Q 003459 186 GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET 227 (818)
Q Consensus 186 ~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~ 227 (818)
..+.+++.+|++.+.|+...=|.|.++|+.++..+..+++..
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR 349 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR 349 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc
Confidence 457889999999999998888999999999988877776653
No 412
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.08 E-value=7.5 Score=43.63 Aligned_cols=192 Identities=15% Similarity=0.041 Sum_probs=113.6
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCC--CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC-CCeEEE
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHT--SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR-SNCISV 107 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~--~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~-~~V~sv 107 (818)
.++++..+|.|.-.|..++..+.....-. ..+.+-.+..+|+ |+.++.+|.++.+|..+|+.+....... ..+..-
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~ 148 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASP 148 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecC
Confidence 35556788888888888888665433221 2222222333665 7788889999999998999988887555 111111
Q ss_pred EEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC---CeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEe
Q 003459 108 DFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR---GVNAIRFTPDGRWVVSGGE--DNTVKLWDLTAGKLLHDFK 182 (818)
Q Consensus 108 ~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~---~V~~l~fspdg~~L~sgs~--Dg~I~IwDl~t~~~i~~~~ 182 (818)
..-.+ ..+..++.++.++..|..++.....+..... .+..--. .....++.+.. ++.+.-+|..+|......+
T Consensus 149 ~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 149 PVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred cEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEeeeee
Confidence 12222 2344444789999999988888777553221 1111011 12334555555 6678888888888877753
Q ss_pred cC----CCCEEEEEEeCC-----CCEEEEEeCCCeEEEEECCCCeEEEEeCC
Q 003459 183 CH----EGQIQCIDFHPH-----EFLLATGSADRTVKFWDLETFELIGSAGP 225 (818)
Q Consensus 183 ~h----~~~I~sv~fspd-----g~~Lasgs~Dg~I~IwDl~t~~~i~~~~~ 225 (818)
.+ ...+........ +.-++.++.++.+...|..+++.+..+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 21 111100101111 22335666788899999999998887765
No 413
>PHA02790 Kelch-like protein; Provisional
Probab=94.93 E-value=0.98 Score=52.77 Aligned_cols=182 Identities=12% Similarity=0.034 Sum_probs=90.5
Q ss_pred CCEEEEEECCC-----cEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEECC--CeEEEEECCCCeEEEEEecC
Q 003459 113 GEFFASGSLDT-----NLKIWDIRKKGCIHTYKGHTRG-VNAIRFTPDGRWVVSGGED--NTVKLWDLTAGKLLHDFKCH 184 (818)
Q Consensus 113 g~~Lasgs~Dg-----~I~IwDl~~~~~i~~l~~h~~~-V~~l~fspdg~~L~sgs~D--g~I~IwDl~t~~~i~~~~~h 184 (818)
+..+++|+.++ .+..||..++.....-...... -.+++ .-+|...+.||.+ ..+..||..+++-.. ...-
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~-~~~l 349 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVN-MPSL 349 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEE-CCCC
Confidence 45566676543 5778888876543322111111 11222 2357777777754 357888876553221 1111
Q ss_pred C-CCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCC
Q 003459 185 E-GQIQCIDFHPHEFLLATGSADR---TVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI 258 (818)
Q Consensus 185 ~-~~I~sv~fspdg~~Lasgs~Dg---~I~IwDl~t~~~i~~--~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~ 258 (818)
. .........-+|.+.+.|+.++ .+..||.++.+-... ........ ++ ..-+|+..+.|+ ...+||.+++
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG--~~e~ydp~~~ 425 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CA-LVFGRRLFLVGR--NAEFYCESSN 425 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eE-EEECCEEEEECC--ceEEecCCCC
Confidence 1 1111112223677778887654 477888876543321 11111111 22 233566666663 3567777655
Q ss_pred ceeccccccccc-eeeeeecCCCEEEEEEcC-----CeEEEEEecCCC
Q 003459 259 RCHDAVDVGWSR-LSDLNVHEGKLLGCSYNQ-----SCVGVWVVDISR 300 (818)
Q Consensus 259 ~~~~~~~~~~~~-v~~l~~~~g~lLatg~~D-----g~V~IWdvd~~~ 300 (818)
+-...-...... -..+...+|++.++|+.+ ..|..||.+..+
T Consensus 426 ~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred cEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 433222222211 223445788888888764 346666666554
No 414
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.90 E-value=7.1 Score=43.79 Aligned_cols=149 Identities=16% Similarity=0.066 Sum_probs=92.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCC--CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCe
Q 003459 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR--SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RGV 146 (818)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~--~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~-~~V 146 (818)
++ .++++..+|.|.-.|.+++..+.....-. ..+..-.+..+|+ +++++.+|.++.+|.++++.+..+.... ..+
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 44 45556789999999999998765443221 2222223333554 7888889999999998999988887655 111
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC---CEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCeEEE
Q 003459 147 NAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG---QIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELIG 221 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~---~I~sv~fspdg~~Lasgs~--Dg~I~IwDl~t~~~i~ 221 (818)
..-.+-.++ .++.++.++.+...|..+|+....+..... .+..--. .....++.+.. ++.+.-.|..+|....
T Consensus 146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEecCCCcceEEEEEccCCcEee
Confidence 111222233 445555789999999999998887664221 1111111 12334555554 5677778888887766
Q ss_pred E
Q 003459 222 S 222 (818)
Q Consensus 222 ~ 222 (818)
.
T Consensus 224 ~ 224 (370)
T COG1520 224 S 224 (370)
T ss_pred e
Confidence 5
No 415
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=94.85 E-value=7.1 Score=42.22 Aligned_cols=218 Identities=14% Similarity=0.173 Sum_probs=124.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECC------CCce-EEEecC-----CCCCeEEEEEcCCCC------------E
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIG------KPNA-ILSLSG-----HTSGIDSVSFDSSEV------------L 73 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~------~~~~-i~~l~~-----h~~~V~~l~fspdg~------------~ 73 (818)
.-+.|+|+| .+.+-++....+...+||.. ..+. +..+.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 457899999 56666777777899999985 2222 233331 234678888864332 3
Q ss_pred EEEEECCCeEEEEECCCCeE-----EEEEc-CCCCCe-EEEEEeC--CCCEEEEEE-CCCcEEEEECCCCeEEE--EEec
Q 003459 74 VAAGAASGTIKLWDLEEAKI-----VRTLT-GHRSNC-ISVDFHP--FGEFFASGS-LDTNLKIWDIRKKGCIH--TYKG 141 (818)
Q Consensus 74 Lasgs~DG~I~IWDl~t~~~-----v~~l~-~h~~~V-~sv~fsp--dg~~Lasgs-~Dg~I~IwDl~~~~~i~--~l~~ 141 (818)
++.++.||+|.-|...-+.. ...+. .....| ..+++.. .+.+|..+. ..+.|.+||-.-.+... .+..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 56778999999998532211 12222 112233 3444443 345555543 46888888854222110 0110
Q ss_pred C-----CCC--e---------EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--CCCCEEEEEEeC------CC
Q 003459 142 H-----TRG--V---------NAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHP------HE 197 (818)
Q Consensus 142 h-----~~~--V---------~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--h~~~I~sv~fsp------dg 197 (818)
. -.+ | +-..-.++++.=+.|..-|.|-+||+. |..++.+.. .-..-+.|+..| .+
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg 261 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSG 261 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence 0 000 1 111112222222333345789999975 778877752 223457787766 35
Q ss_pred CEEEEEeCCCeEEEEECCCCeEEEEeCCCCC------CeeEEEEeC
Q 003459 198 FLLATGSADRTVKFWDLETFELIGSAGPETS------GVRCLTFNP 237 (818)
Q Consensus 198 ~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~------~I~sl~fsp 237 (818)
.+|+---.||+|..||..+++.+..+....+ .++.|.|-.
T Consensus 262 ~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 262 ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 6777777899999999999998877754422 345566644
No 416
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.84 E-value=0.023 Score=67.38 Aligned_cols=173 Identities=16% Similarity=0.286 Sum_probs=105.4
Q ss_pred ecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC--CCeEEEE-----EcCCCCCeEEEEEeC---CCCEEEEEECCC
Q 003459 55 LSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLE--EAKIVRT-----LTGHRSNCISVDFHP---FGEFFASGSLDT 123 (818)
Q Consensus 55 l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~--t~~~v~~-----l~~h~~~V~sv~fsp---dg~~Lasgs~Dg 123 (818)
+++..+.|-.+.|-. +-..+. -.-|.+.+||+. .|++... .......+.-+.|.| +.-++..+..++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 346677788888832 111121 223678899875 3443222 222334445566655 456788888888
Q ss_pred cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEE
Q 003459 124 NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG 203 (818)
Q Consensus 124 ~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasg 203 (818)
.|++..+.+... ..+.+|...+..++|-..|-.++.+ ++|||..++.+
T Consensus 206 ~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~-------------------------------lSpDGtv~a~a 253 (1283)
T KOG1916|consen 206 EIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS-------------------------------LSPDGTVFAWA 253 (1283)
T ss_pred ceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-------------------------------eCCCCcEEEEe
Confidence 888877654332 3455688888888776555332222 78999999999
Q ss_pred eCCCeEEEEECC-----CCeEEEEeCCCC-CCeeEEEEeCC-------C--CEEEEEECC--CEEEEEecCCcee
Q 003459 204 SADRTVKFWDLE-----TFELIGSAGPET-SGVRCLTFNPD-------G--RTLLCGLHE--SLKVFSWEPIRCH 261 (818)
Q Consensus 204 s~Dg~I~IwDl~-----t~~~i~~~~~~~-~~I~sl~fspd-------g--~~Lasgs~d--~I~Vwd~~~~~~~ 261 (818)
+.||.+++|.+. .-.+++..++|. .+-.|.-|+.+ | .+++++++- .+++|.-.+.+|+
T Consensus 254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 999988888764 233455566776 34344334432 2 234455443 5999998888887
No 417
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.76 E-value=0.71 Score=53.39 Aligned_cols=148 Identities=14% Similarity=0.182 Sum_probs=91.1
Q ss_pred CEEEEEEeeCCCcEEEEEe--CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC----CCEEEEEECCCeEEEEECC--
Q 003459 18 TVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS----EVLVAAGAASGTIKLWDLE-- 89 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs--~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspd----g~~Lasgs~DG~I~IWDl~-- 89 (818)
+|..++|. ||.+++.|.- .+|.+++ .+.+.+..| ..|.++.|.|- -..|++.-....|.+|-+.
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kf---Gds~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKF---GDSKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCcccc---CCccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 67889997 3666666553 3344333 223334333 35899999884 2244455667899999875
Q ss_pred ---CCeEEEEEcCC---CC--CeEEEEEeCCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCeEEEEEcCCCCEEE
Q 003459 90 ---EAKIVRTLTGH---RS--NCISVDFHPFGEFFASGSLDTNLKIWDIRKK--GCIHTYKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 90 ---t~~~v~~l~~h---~~--~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~--~~i~~l~~h~~~V~~l~fspdg~~L~ 159 (818)
.++.+..-..+ .- --..+.|||....|++-.....-.+++++.. +....++ ..+.|.|.+|..||+.|+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEE
Confidence 23332221111 11 1246789999998888776665556666533 3333444 457799999999999988
Q ss_pred EEECCC-eEEEEECCC
Q 003459 160 SGGEDN-TVKLWDLTA 174 (818)
Q Consensus 160 sgs~Dg-~I~IwDl~t 174 (818)
++-... .-++||-..
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 774432 357898543
No 418
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.74 E-value=0.093 Score=53.79 Aligned_cols=104 Identities=21% Similarity=0.291 Sum_probs=65.5
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEE-ecCCCCCeEE-EEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC-CCe
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDS-VSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR-SNC 104 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~~-l~~h~~~V~~-l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~-~~V 104 (818)
.+.-+++|+.+|.|++|+......... +..-...|.+ +.-..++.+.++++.||.|+.|++.-++.+.....|. ..+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 344588999999999998752211111 1111222322 2223456689999999999999999999888887777 444
Q ss_pred EEEEEeCCCCEEEEE--ECCCcEEEEECC
Q 003459 105 ISVDFHPFGEFFASG--SLDTNLKIWDIR 131 (818)
Q Consensus 105 ~sv~fspdg~~Lasg--s~Dg~I~IwDl~ 131 (818)
........+++++.+ +.|..++.|++.
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchh
Confidence 444444445555555 555566666554
No 419
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.43 E-value=12 Score=42.88 Aligned_cols=143 Identities=12% Similarity=0.200 Sum_probs=90.0
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCc-----eEEEecCCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCC--Ce--
Q 003459 27 KSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHTSGIDSVSFDS-----SEVLVAAGAASGTIKLWDLEE--AK-- 92 (818)
Q Consensus 27 ~~~~lLatgs~Dg~V~lWdl~~~~-----~i~~l~~h~~~V~~l~fsp-----dg~~Lasgs~DG~I~IWDl~t--~~-- 92 (818)
++...+++|+..|.++||+..... .+.+. .-..+|..+..-. +...||+ -.-..+.+|.+.. |.
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 355689999999999999984432 22222 2457888887632 2234444 4567788888721 11
Q ss_pred -----EEEEEcCCC--CCeEEEEEeCCC-----CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003459 93 -----IVRTLTGHR--SNCISVDFHPFG-----EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (818)
Q Consensus 93 -----~v~~l~~h~--~~V~sv~fspdg-----~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~s 160 (818)
.+..+..|. .....+++-|.| .+|.+-+.||.+.+|+-+.......+.. .--...+.|.+.-..|++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 122222332 234455555533 4788899999999999665443333332 222345778887888999
Q ss_pred EECCCeEEEEEC
Q 003459 161 GGEDNTVKLWDL 172 (818)
Q Consensus 161 gs~Dg~I~IwDl 172 (818)
++.+..|..|..
T Consensus 192 ~sss~~l~~Yky 203 (418)
T PF14727_consen 192 ASSSWTLECYKY 203 (418)
T ss_pred ecCceeEEEecH
Confidence 998888888865
No 420
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.40 E-value=6.5 Score=42.22 Aligned_cols=159 Identities=13% Similarity=0.172 Sum_probs=104.6
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH-TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h-~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (818)
+.+....+.++.|+|+.+.|++......-.+|=...|+.+.++.-. -.....|.|..+|.+.++--.+..+.++.+..+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3455566999999999999888887777777766788888877521 123456788888887777777888888776654
Q ss_pred eEEEE-----Ee----cC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe-EE--EEeCCC-------CCCeeEEEE
Q 003459 176 KLLHD-----FK----CH-EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE-LI--GSAGPE-------TSGVRCLTF 235 (818)
Q Consensus 176 ~~i~~-----~~----~h-~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~-~i--~~~~~~-------~~~I~sl~f 235 (818)
..+.. +. .+ ....-.++|.|....|+.+-+-.=+.||.+.... .+ .....+ -..|.++.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 22111 11 12 4567889999999889888888878887766332 11 111111 234677888
Q ss_pred eCCCCEEEEEECCCEEEEEe
Q 003459 236 NPDGRTLLCGLHESLKVFSW 255 (818)
Q Consensus 236 spdg~~Lasgs~d~I~Vwd~ 255 (818)
++....|.+-++++-.+..+
T Consensus 241 ~~~~~~LLVLS~ESr~l~Ev 260 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEV 260 (316)
T ss_pred cCCCCcEEEEecCCceEEEE
Confidence 87655555555554344433
No 421
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.11 E-value=11 Score=41.26 Aligned_cols=227 Identities=9% Similarity=-0.012 Sum_probs=115.5
Q ss_pred cEEEEEeCCCeEEEEECCC--CceEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE-------------
Q 003459 30 RVLVTGGEDHKVNLWAIGK--PNAILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLWDLEEAKI------------- 93 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~--~~~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IWDl~t~~~------------- 93 (818)
++|+.|.++| +.+.++.. .+..+.+ +...|+++...+..+.|++-+ ....++.+++..-..
T Consensus 14 ~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 5799999999 55555654 2233322 466899999988777666554 334599999842221
Q ss_pred --EEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCC--e--EEEEE---e-cCCCCeEEEEEcCC--CCEEEE
Q 003459 94 --VRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKK--G--CIHTY---K-GHTRGVNAIRFTPD--GRWVVS 160 (818)
Q Consensus 94 --v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~--~--~i~~l---~-~h~~~V~~l~fspd--g~~L~s 160 (818)
....-+|...+..+....... .++++.....|.++..... + ....+ . .-..++..+..+++ ...++.
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 111223444454444442222 3445555666777654322 1 11110 0 01123333333332 457777
Q ss_pred EECCCeEEEEECCC--CeEEE---E--EecCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE--EEeCCCCCCe
Q 003459 161 GGEDNTVKLWDLTA--GKLLH---D--FKCHE-GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI--GSAGPETSGV 230 (818)
Q Consensus 161 gs~Dg~I~IwDl~t--~~~i~---~--~~~h~-~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i--~~~~~~~~~I 230 (818)
|+..+...++++.. ..... . ..... .++. +..-+++.+|++- |....+.|....... ..+. -...+
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~-i~~l~~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l~-w~~~p 246 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPIS-VVQVPRDEFLLCY--DEFGVFVNLYGKRRSRNPILH-WEFMP 246 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCceE-EEEECCCeEEEEE--CcEEEEEeCCCCccccceEEE-cCCcc
Confidence 77653334444432 11000 0 11111 2333 3334455555544 444556665531111 1111 13345
Q ss_pred eEEEEeCCCCEEEEEECCCEEEEEecCCceecccc
Q 003459 231 RCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVD 265 (818)
Q Consensus 231 ~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~ 265 (818)
.++++. ..||++-..+.|.|+++.++...+.+.
T Consensus 247 ~~~~~~--~pyll~~~~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 247 ESFAYH--SPYLLAFHDNGIEIRSIKTGELLQELA 279 (302)
T ss_pred cEEEEE--CCEEEEEcCCcEEEEECCCCceEEEEe
Confidence 677776 357777778889999999887666553
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.01 E-value=0.42 Score=58.65 Aligned_cols=140 Identities=11% Similarity=-0.019 Sum_probs=88.5
Q ss_pred CeEEEEEeCCCCEEEEE--ECCCcEEEEECCCCeEE-----EEEe------cCCCCeEEEEEcCCC-CEEEEEECCCeEE
Q 003459 103 NCISVDFHPFGEFFASG--SLDTNLKIWDIRKKGCI-----HTYK------GHTRGVNAIRFTPDG-RWVVSGGEDNTVK 168 (818)
Q Consensus 103 ~V~sv~fspdg~~Lasg--s~Dg~I~IwDl~~~~~i-----~~l~------~h~~~V~~l~fspdg-~~L~sgs~Dg~I~ 168 (818)
.+..+...+|+...++. +.+-.|+.||+++-..- .-+. .......++.|.|.- ...++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 44555555676654433 33447899998753211 1111 122345678888842 2355666788888
Q ss_pred EEECCCCeE-EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC----CCCCeeEEEEeCCCCEEE
Q 003459 169 LWDLTAGKL-LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP----ETSGVRCLTFNPDGRTLL 243 (818)
Q Consensus 169 IwDl~t~~~-i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~----~~~~I~sl~fspdg~~La 243 (818)
+..+..... +..+. .....++++|+|.|+.+++|-..|++.-|-.. ++....+.. ....|.+++|-....+++
T Consensus 182 V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEE
Confidence 887664332 22222 35678999999999999999999999998654 333333211 146799999998877776
Q ss_pred E
Q 003459 244 C 244 (818)
Q Consensus 244 s 244 (818)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 4
No 423
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.01 E-value=12 Score=41.43 Aligned_cols=225 Identities=15% Similarity=0.182 Sum_probs=113.9
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce---EEEe----cCCCCCeEEEEEcCC---CCEEEEEEC-C------
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA---ILSL----SGHTSGIDSVSFDSS---EVLVAAGAA-S------ 80 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~---i~~l----~~h~~~V~~l~fspd---g~~Lasgs~-D------ 80 (818)
.-+.|+|.|+ +++|+ +...|.|.+++ .++.. +..+ .........++++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pd-G~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPD-GRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETT-SCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCC-CcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 4578999995 66655 45699999999 34433 2233 124457899999994 233433332 1
Q ss_pred --CeEEEEECCCC-------eE-EEEEcC---CCCCeEEEEEeCCCCEEEEEECCC-------------cEEEEECCCC-
Q 003459 81 --GTIKLWDLEEA-------KI-VRTLTG---HRSNCISVDFHPFGEFFASGSLDT-------------NLKIWDIRKK- 133 (818)
Q Consensus 81 --G~I~IWDl~t~-------~~-v~~l~~---h~~~V~sv~fspdg~~Lasgs~Dg-------------~I~IwDl~~~- 133 (818)
..|.-|.+..+ +. +..+.. .......|.|.|+|.++++.+..+ .|.-.+....
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~ 159 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSI 159 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcC
Confidence 24555555433 11 112222 233456799999997655554332 2332332211
Q ss_pred -------------eEEEEEecCCCCeEEEEEcCC-CCEEEEE-ECCCeEEEEECCCC-----------------------
Q 003459 134 -------------GCIHTYKGHTRGVNAIRFTPD-GRWVVSG-GEDNTVKLWDLTAG----------------------- 175 (818)
Q Consensus 134 -------------~~i~~l~~h~~~V~~l~fspd-g~~L~sg-s~Dg~I~IwDl~t~----------------------- 175 (818)
..+.. .++.. ...++|+|. |.++++= +.++.=.|.-+..|
T Consensus 160 p~dnP~~~~~~~~~~i~A-~GlRN-~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYA-YGLRN-PFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp -TTSTTTTSTTSTTTEEE-E--SE-EEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCCccccCCCceEEEEE-eCCCc-cccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00110 12222 467899998 6544331 12221112111111
Q ss_pred ------eEEEEEecCCCCEEEEEEeC-------CCCEEEEEeCCCeEEEEECCCCeEEEE----eCCCCCCeeEEEEeCC
Q 003459 176 ------KLLHDFKCHEGQIQCIDFHP-------HEFLLATGSADRTVKFWDLETFELIGS----AGPETSGVRCLTFNPD 238 (818)
Q Consensus 176 ------~~i~~~~~h~~~I~sv~fsp-------dg~~Lasgs~Dg~I~IwDl~t~~~i~~----~~~~~~~I~sl~fspd 238 (818)
.++..+. +...+..+.|.. .|.++++....+.|....+.....+.. +......+..+++.||
T Consensus 238 ~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD 316 (331)
T PF07995_consen 238 SCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD 316 (331)
T ss_dssp S-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT
T ss_pred CCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCC
Confidence 1223333 335567777764 355666666677888888875433221 2334447999999999
Q ss_pred CCEEEEEECC
Q 003459 239 GRTLLCGLHE 248 (818)
Q Consensus 239 g~~Lasgs~d 248 (818)
|.++++...+
T Consensus 317 G~Lyv~~d~~ 326 (331)
T PF07995_consen 317 GALYVSDDSD 326 (331)
T ss_dssp SEEEEEE-TT
T ss_pred CeEEEEECCC
Confidence 9887776533
No 424
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.86 E-value=2 Score=51.24 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEe--CCCCEEEEEeCCCeEEEEECC-----
Q 003459 144 RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFH--PHEFLLATGSADRTVKFWDLE----- 215 (818)
Q Consensus 144 ~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sv~fs--pdg~~Lasgs~Dg~I~IwDl~----- 215 (818)
....-+.-+.-++..++-.....+.|||.+.+....+-. ...+.|..+.|. |++..+++.+..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344555555555555554445579999999887554433 246789999986 578888888888999988532
Q ss_pred ----CCeEEEEe--CCC-CCCeeEEEEeCCCCEEEEEECCCEEEEEe
Q 003459 216 ----TFELIGSA--GPE-TSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (818)
Q Consensus 216 ----t~~~i~~~--~~~-~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (818)
++..+..+ ..+ ..+|.+..|.++|. |++|+++.+.||+-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~sGNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGSGNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEeCCEEEEECC
Confidence 22333332 223 36789999999985 55566777777753
No 425
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.58 E-value=16 Score=41.52 Aligned_cols=142 Identities=13% Similarity=0.144 Sum_probs=81.3
Q ss_pred eEEEEEeCCCCEEEEEECCCcEE-EEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----E
Q 003459 104 CISVDFHPFGEFFASGSLDTNLK-IWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK-----L 177 (818)
Q Consensus 104 V~sv~fspdg~~Lasgs~Dg~I~-IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~-----~ 177 (818)
...+...+++.+++++.. |.+. -||--..-....-......+..+.|.+++..++++ .+|.+.. ....++ .
T Consensus 241 f~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 344566777777776654 4433 34432111111122234568899999998877665 5666443 334443 1
Q ss_pred EEEEec--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe---CCCCCCeeEEEEeCCCCEEEEEECCCE
Q 003459 178 LHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA---GPETSGVRCLTFNPDGRTLLCGLHESL 250 (818)
Q Consensus 178 i~~~~~--h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~---~~~~~~I~sl~fspdg~~Lasgs~d~I 250 (818)
...... ....+..+.|.+++..+++| ..|.+.... ..++.-... ..-...++.+.|.++++.+++|..+.|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~i 393 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVL 393 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEE
Confidence 222221 12358899999888776665 467665553 444432222 223456889999888888888865543
No 426
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.49 E-value=17 Score=41.41 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE-EEE-ecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe-----
Q 003459 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL-HDF-KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----- 218 (818)
Q Consensus 146 V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i-~~~-~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~----- 218 (818)
...+..+++|.+++.+.....++-||- |... ... ......++.+.|.+++.+++++ .+|.+. |....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 344566778877666644333334442 3221 111 1234568999999999888776 455543 3344443
Q ss_pred EEEEeCC--CCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccc---cccceeeeeecCCCEEEEEEcCCeEEE
Q 003459 219 LIGSAGP--ETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV---GWSRLSDLNVHEGKLLGCSYNQSCVGV 293 (818)
Q Consensus 219 ~i~~~~~--~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~---~~~~v~~l~~~~g~lLatg~~Dg~V~I 293 (818)
....... ....+.++.|.+++..+++|..+ +.+...+.++....... -...++.+.+.+.......+.+|.|--
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G-~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSG-ILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCC-cEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEE
Confidence 2222221 22458999999999888888555 34444455555443321 123455666555455555667777654
Q ss_pred E
Q 003459 294 W 294 (818)
Q Consensus 294 W 294 (818)
|
T Consensus 396 ~ 396 (398)
T PLN00033 396 Y 396 (398)
T ss_pred e
Confidence 4
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=0.53 Score=57.87 Aligned_cols=142 Identities=13% Similarity=0.077 Sum_probs=90.2
Q ss_pred CeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEE-----EEEcC------CCCCeEEEEEeCCCC-EEEEEECCCcEE
Q 003459 61 GIDSVSFDSSEVLVAAGA--ASGTIKLWDLEEAKIV-----RTLTG------HRSNCISVDFHPFGE-FFASGSLDTNLK 126 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs--~DG~I~IWDl~t~~~v-----~~l~~------h~~~V~sv~fspdg~-~Lasgs~Dg~I~ 126 (818)
+|..+...+|+...++.. .+-.|..||+++-..- .-+.. ......++.|.|.-. ..++...|+.|.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455555666766544433 3347889998753211 11111 223456788988654 466777889898
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec----CCCCEEEEEEeCCCCEEEE
Q 003459 127 IWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC----HEGQIQCIDFHPHEFLLAT 202 (818)
Q Consensus 127 IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~----h~~~I~sv~fspdg~~Las 202 (818)
+..+........--......++++|+|.|+.++.|...|++.-|... .+....+.+ ....|.+|+|--...++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 88765432222111245668999999999999999999999988754 333333322 1367999999887666665
Q ss_pred E
Q 003459 203 G 203 (818)
Q Consensus 203 g 203 (818)
-
T Consensus 261 y 261 (1405)
T KOG3630|consen 261 Y 261 (1405)
T ss_pred e
Confidence 3
No 428
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.42 E-value=2.8 Score=47.13 Aligned_cols=141 Identities=15% Similarity=0.163 Sum_probs=80.0
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--Ce--EEEEEcCCCCCeEEEEEeCCCCEEEEEECCC
Q 003459 60 SGIDSVSFDSSEVLVAAGA-----------ASG-TIKLWDLEE--AK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDT 123 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs-----------~DG-~I~IWDl~t--~~--~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg 123 (818)
.....|+|.++|+++++-. ..+ .|.+++-.+ |+ ....+...-.....++|.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3457889999998776642 223 677776432 33 223443333456789999888 44444444
Q ss_pred cEEEE-ECCC-------CeEE-EEEec----CCCCeEEEEEcCCCCEEEEEECC-------------------CeEEEEE
Q 003459 124 NLKIW-DIRK-------KGCI-HTYKG----HTRGVNAIRFTPDGRWVVSGGED-------------------NTVKLWD 171 (818)
Q Consensus 124 ~I~Iw-Dl~~-------~~~i-~~l~~----h~~~V~~l~fspdg~~L~sgs~D-------------------g~I~IwD 171 (818)
|..| |... .+.+ ..+.. +......++|.|||.+.++-+.. |.|.-+|
T Consensus 92 -i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 92 -ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred -EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 5444 5432 1112 22322 13447789999999866654421 4456666
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe
Q 003459 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS 204 (818)
Q Consensus 172 l~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs 204 (818)
...++. ..+.........++|+|+|.++++-.
T Consensus 171 pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 655443 22222223356889999988876644
No 429
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.32 E-value=16 Score=40.53 Aligned_cols=95 Identities=13% Similarity=0.109 Sum_probs=42.2
Q ss_pred CCcEEEEEeCC-CeEEEEECCCC-ceEEEecCCC--CCeEEEEEcCCCCEEEEEECC-----------CeEEEEECCCCe
Q 003459 28 SSRVLVTGGED-HKVNLWAIGKP-NAILSLSGHT--SGIDSVSFDSSEVLVAAGAAS-----------GTIKLWDLEEAK 92 (818)
Q Consensus 28 ~~~lLatgs~D-g~V~lWdl~~~-~~i~~l~~h~--~~V~~l~fspdg~~Lasgs~D-----------G~I~IWDl~t~~ 92 (818)
++.++++|+.. ..+..+|+... ..-..+..-. .........-++++.+.|+.+ ..+..||..+.+
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 45666666643 45666776322 1112222111 111111112256666777653 247778887665
Q ss_pred EEEEEcCCCCCeEE--EEEeCCCCEEEEEECC
Q 003459 93 IVRTLTGHRSNCIS--VDFHPFGEFFASGSLD 122 (818)
Q Consensus 93 ~v~~l~~h~~~V~s--v~fspdg~~Lasgs~D 122 (818)
-...-......... ....-+++..+.|+.+
T Consensus 97 W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 97 WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 33321111111111 1112357777777654
No 430
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.24 E-value=1.7 Score=53.09 Aligned_cols=93 Identities=15% Similarity=0.292 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003459 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD 180 (818)
Q Consensus 102 ~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~ 180 (818)
..|..|.++|+|.+++..+..| |.|..+.. ...-..+.+-...|.|-.+.-+..+ +.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~---------------------~~ 142 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERF---------------------FT 142 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhh---------------------cc
Confidence 4678888999999998888765 55555432 1111222222223333222211111 10
Q ss_pred EecCCCCEEEEEEeCC---CCEEEEEeCCCeEEEEECCCC
Q 003459 181 FKCHEGQIQCIDFHPH---EFLLATGSADRTVKFWDLETF 217 (818)
Q Consensus 181 ~~~h~~~I~sv~fspd---g~~Lasgs~Dg~I~IwDl~t~ 217 (818)
..+...|..+.|||. +..|+.-+.|+++++||+...
T Consensus 143 -~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 143 -SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred -CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 113456788889986 467888888999999998653
No 431
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.99 E-value=15 Score=39.45 Aligned_cols=271 Identities=10% Similarity=0.036 Sum_probs=148.0
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---e
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA---K 92 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~---~ 92 (818)
.+-+..+.++. ++.+.+..+.-++|.|+.++..-..+..-.-.=..-.|.-.|++..++..|.-+.+.|+.+. .
T Consensus 86 ~~l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 86 RDLFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCce
Confidence 34455666653 45666777777999999776554433221111122334456888888886666788888654 3
Q ss_pred EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 93 IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG---CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (818)
Q Consensus 93 ~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~---~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~I 169 (818)
....+.........++.+ |++-..+..|+-+.+.|+.... .+..+. ....+.++..+++-.+++. .+.-+.+
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vv--y~egvli 237 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVV--YDEGVLI 237 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEE--cccceEE
Confidence 333444444444666666 8888888899999999987542 333333 2336777777765444443 3445677
Q ss_pred EECCCCeEEEEEecC-CCCEEEE-EEeCCCCEEEEEeCCCeEEEEECCCCe---EEEEeCCCCCCeeEEEEeCCCCEEEE
Q 003459 170 WDLTAGKLLHDFKCH-EGQIQCI-DFHPHEFLLATGSADRTVKFWDLETFE---LIGSAGPETSGVRCLTFNPDGRTLLC 244 (818)
Q Consensus 170 wDl~t~~~i~~~~~h-~~~I~sv-~fspdg~~Lasgs~Dg~I~IwDl~t~~---~i~~~~~~~~~I~sl~fspdg~~Las 244 (818)
-|....+..+.+... ...+.++ .|.-.+++......+.-+.+.|+.+.. ....+......-..+..+ |.++..
T Consensus 238 vd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi 315 (370)
T COG5276 238 VDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI 315 (370)
T ss_pred EecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe
Confidence 777766544444321 2222222 233345566666666667777766421 111122112122333332 445555
Q ss_pred EECCCEEEEEecCCceeccccccccce-eeeeecCCCEEEEEEcCCeEEEEEe
Q 003459 245 GLHESLKVFSWEPIRCHDAVDVGWSRL-SDLNVHEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 245 gs~d~I~Vwd~~~~~~~~~~~~~~~~v-~~l~~~~g~lLatg~~Dg~V~IWdv 296 (818)
+..+...+.+..+.+........-... .+-.+-+.+++.....++-+.||+.
T Consensus 316 adkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 316 ADKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccCCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 544555555554433322221111111 1112234557777888888888875
No 432
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.70 E-value=0.31 Score=37.63 Aligned_cols=35 Identities=26% Similarity=0.560 Sum_probs=30.6
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 003459 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (818)
Q Consensus 185 ~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i 220 (818)
...|.+++|+|...+||.|+.+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 457999999999999999999999999998 55543
No 433
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.69 E-value=3.7 Score=48.97 Aligned_cols=111 Identities=17% Similarity=0.193 Sum_probs=75.5
Q ss_pred CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEc--CCCCEEEEEECCCeEEEEECC-----
Q 003459 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFT--PDGRWVVSGGEDNTVKLWDLT----- 173 (818)
Q Consensus 102 ~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~-~h~~~V~~l~fs--pdg~~L~sgs~Dg~I~IwDl~----- 173 (818)
....-+.-+.-++..++-+....+.|||.+.+.....-. ...+.|.++.|. |+|+.+++.|..+.|.+|--.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344445555555555555555689999998877443322 346789999996 589999999999999998542
Q ss_pred ----CCeEEEEEe--cCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 003459 174 ----AGKLLHDFK--CHE-GQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 174 ----t~~~i~~~~--~h~-~~I~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
+...+..+. .++ .+|....|.++|.+++.+ ++.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 122333332 233 678999999999776655 467888874
No 434
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=92.57 E-value=34 Score=42.41 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=120.3
Q ss_pred CCeEEEEEeCCCCEEEEEECC--------------CcEEEEECCCCeEEEEEecCC----CCeEEEEEcCC-CCEEEEEE
Q 003459 102 SNCISVDFHPFGEFFASGSLD--------------TNLKIWDIRKKGCIHTYKGHT----RGVNAIRFTPD-GRWVVSGG 162 (818)
Q Consensus 102 ~~V~sv~fspdg~~Lasgs~D--------------g~I~IwDl~~~~~i~~l~~h~----~~V~~l~fspd-g~~L~sgs 162 (818)
.....+++.+....+++.+.. ..++++|-.+.+.+...+-.. -.|.++.|..| +.++++|+
T Consensus 715 ~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT 794 (1096)
T KOG1897|consen 715 ESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGT 794 (1096)
T ss_pred CChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEE
Confidence 345567777644445444321 246677766665554432111 23555568877 66777775
Q ss_pred C----------CCeEEEEECCCCeEEEEEec--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCe
Q 003459 163 E----------DNTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGV 230 (818)
Q Consensus 163 ~----------Dg~I~IwDl~t~~~i~~~~~--h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I 230 (818)
. .|.|.+|....++.+..... -.+.+.++.. -+|++||.- +..|++|++.+.+.+..-..+..++
T Consensus 795 ~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~ 871 (1096)
T KOG1897|consen 795 GLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPI 871 (1096)
T ss_pred EeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCe
Confidence 3 47888887776433333221 2345555543 256666654 5689999999998887777788889
Q ss_pred eEEEEeCCCCEEEEEEC-CCEEEEEecCCce-eccccccccc--eeeeeecCCCEEEEEEcCCeEEEEEecC
Q 003459 231 RCLTFNPDGRTLLCGLH-ESLKVFSWEPIRC-HDAVDVGWSR--LSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 231 ~sl~fspdg~~Lasgs~-d~I~Vwd~~~~~~-~~~~~~~~~~--v~~l~~~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
..+...-.|..+++|.- +++.+..+...+. +..+.-.|.+ +.....-++..++.+-.+|.+.+-..+.
T Consensus 872 ~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 872 IALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred EEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeecccccEEEEEecC
Confidence 99999999999999853 4677777766552 1222222222 2344456777788888888887776653
No 435
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=5.9 Score=47.30 Aligned_cols=195 Identities=9% Similarity=0.133 Sum_probs=102.5
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--E--cCCCCCeEEEEEeCCCC
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT--L--TGHRSNCISVDFHPFGE 114 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~--l--~~h~~~V~sv~fspdg~ 114 (818)
-.|+||++ +|..+..+.-....+..+.|+.+..+| +...+|++++|++-... +.. . ......|..+.|..+|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI-~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELI-CVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCceEE-EEeccceEEEeecchhh-hcccccccccccCceeEEEEecCc-
Confidence 34777775 466555554444588899999888766 45789999999975322 222 1 1223345555554455
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEc--CCCC---EEEEEE-CCCeEEEEECCCC-eEEEEEecCCC
Q 003459 115 FFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFT--PDGR---WVVSGG-EDNTVKLWDLTAG-KLLHDFKCHEG 186 (818)
Q Consensus 115 ~Lasgs~Dg~I~IwDl~~~~~i~~l~~-h~~~V~~l~fs--pdg~---~L~sgs-~Dg~I~IwDl~t~-~~i~~~~~h~~ 186 (818)
+++-..+|.+.+-.-.....+.++.. ......+.+|. +++. .++-.. ..+. .++-...+ .....+....+
T Consensus 140 -Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~-~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 -VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGL-HICQVEESRVQLHALSWPNS 217 (829)
T ss_pred -eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhh-cccceecccccccccCCCCc
Confidence 34444456665544322223333332 11111112222 1211 111110 0000 11111111 11122222235
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCC
Q 003459 187 QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDG 239 (818)
Q Consensus 187 ~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~-~~~I~sl~fspdg 239 (818)
.+..+..+|+..+|+.-..+|.|.+-+.+..+.+..+... ..+...++|..+.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 6788999999999999999999999998877766665422 2233467776554
No 436
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.43 E-value=6.6 Score=40.13 Aligned_cols=172 Identities=10% Similarity=0.114 Sum_probs=99.0
Q ss_pred CCCEEEEEEC--CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEE-EECCCcEEEEECCCCeEEEEEecCCCCe
Q 003459 70 SEVLVAAGAA--SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFAS-GSLDTNLKIWDIRKKGCIHTYKGHTRGV 146 (818)
Q Consensus 70 dg~~Lasgs~--DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Las-gs~Dg~I~IwDl~~~~~i~~l~~h~~~V 146 (818)
++.++.+.+. ...|++||+.+|+.+....-....+..=-...-|+++.. .-.+|.-..||.++.+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4566666554 346999999999988765532222222111222444433 3357888899999888877765 23334
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec--CC---CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 003459 147 NAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC--HE---GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG 221 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--h~---~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~ 221 (818)
+.++. |+..|+.+....+++.-|..+-....++.. .. ..++-+.|- +|.+.|-.-.+..|...|.++|+.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 45543 455677766666777777665433332221 11 223344442 45555555555566666777777665
Q ss_pred EeC------------CCCCCeeEEEEeCCC-CEEEEE
Q 003459 222 SAG------------PETSGVRCLTFNPDG-RTLLCG 245 (818)
Q Consensus 222 ~~~------------~~~~~I~sl~fspdg-~~Lasg 245 (818)
.+. .+..-.+.|++.|++ +++++|
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 532 233456889999987 555555
No 437
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.40 E-value=20 Score=39.34 Aligned_cols=106 Identities=12% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCCEEEEEECC-----CeEEEEECCCCeE---EEEEcCCCCCe--EEEEEeCCCCEEEEEEC-----CCcEEEEECCCCe
Q 003459 70 SEVLVAAGAAS-----GTIKLWDLEEAKI---VRTLTGHRSNC--ISVDFHPFGEFFASGSL-----DTNLKIWDIRKKG 134 (818)
Q Consensus 70 dg~~Lasgs~D-----G~I~IWDl~t~~~---v~~l~~h~~~V--~sv~fspdg~~Lasgs~-----Dg~I~IwDl~~~~ 134 (818)
++.+++.|+.+ ..+..||+.+.+. ...+..-.... .+++.. ++..++.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45666677654 3567778776553 12222111111 122222 4566666654 2368889988765
Q ss_pred EEEEEecC-CCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCe
Q 003459 135 CIHTYKGH-TRGVNAIRFTPDGRWVVSGGEDN----TVKLWDLTAGK 176 (818)
Q Consensus 135 ~i~~l~~h-~~~V~~l~fspdg~~L~sgs~Dg----~I~IwDl~t~~ 176 (818)
....-... .......+..-+++..+.|+.++ .+.+||..+.+
T Consensus 151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 43221111 11112222233567777777664 35688887654
No 438
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=92.39 E-value=0.36 Score=37.28 Aligned_cols=36 Identities=19% Similarity=0.329 Sum_probs=30.1
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA 51 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~ 51 (818)
.....|.+++|+| ...++|.|..+|.|.+|.+ +++.
T Consensus 9 ~l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 9 NLPSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 3456799999999 6779999999999999998 4544
No 439
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.27 E-value=1.7 Score=49.41 Aligned_cols=139 Identities=14% Similarity=0.196 Sum_probs=90.3
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCC-CeEEEEEc--C-
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEV-------LVAAGAASGTIKLWDLEE-AKIVRTLT--G- 99 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~-------~Lasgs~DG~I~IWDl~t-~~~v~~l~--~- 99 (818)
++..|+....++-.|++-|+.+..+.-|... -+.|.|+.+ .-++|-.+..|.-.|.+- |..+.... .
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY 559 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDY 559 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhc
Confidence 4445666677888888999999988877665 567777432 223455566666666543 22222211 0
Q ss_pred -CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 100 -HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (818)
Q Consensus 100 -h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~ 173 (818)
......+..-. ...|+++|+..|.|++||--.......+.+....|..+..+.+|+++++.+ ..++.+.|++
T Consensus 560 ~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 560 KTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 11122222222 345999999999999999654444455666778899999999999988776 4577777765
No 440
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.16 E-value=20 Score=38.88 Aligned_cols=163 Identities=18% Similarity=0.286 Sum_probs=95.6
Q ss_pred eEEEEECCCCeEEEEEcC------CCCCeEEEEEeCCC-----CEEEEEE-CCCcEEEEECCCCeEEEEEecC-------
Q 003459 82 TIKLWDLEEAKIVRTLTG------HRSNCISVDFHPFG-----EFFASGS-LDTNLKIWDIRKKGCIHTYKGH------- 142 (818)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~------h~~~V~sv~fspdg-----~~Lasgs-~Dg~I~IwDl~~~~~i~~l~~h------- 142 (818)
+|.+||+.+++.++++.- ..+.+..+.+.... .++..+. ..+.|.++|+.+++.-+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 788999999998888752 23456777776532 2443333 3458999999988754443211
Q ss_pred ------------CCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC-----C---------eEEEEEecCCCCEEEEEE
Q 003459 143 ------------TRGVNAIRFTP---DGRWVVSGGEDNTVKLWDLTA-----G---------KLLHDFKCHEGQIQCIDF 193 (818)
Q Consensus 143 ------------~~~V~~l~fsp---dg~~L~sgs~Dg~I~IwDl~t-----~---------~~i~~~~~h~~~I~sv~f 193 (818)
...+..++.+| +|++|+-....+. ++|-+.+ . +.+..+-...+....+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 22366667665 6677776654443 2332221 1 112222211245677889
Q ss_pred eCCCCEEEEEeCCCeEEEEECCC------CeEEEEeCCCCCCeeEEEEeC--CCCEEEEE
Q 003459 194 HPHEFLLATGSADRTVKFWDLET------FELIGSAGPETSGVRCLTFNP--DGRTLLCG 245 (818)
Q Consensus 194 spdg~~Lasgs~Dg~I~IwDl~t------~~~i~~~~~~~~~I~sl~fsp--dg~~Lasg 245 (818)
+++|.++++--..+.|..|+..+ .+.+..-...-..+.++.+.+ +|.+.+..
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99999999998999999999986 223332222245778899988 66555544
No 441
>PLN02193 nitrile-specifier protein
Probab=91.27 E-value=18 Score=42.22 Aligned_cols=186 Identities=13% Similarity=0.123 Sum_probs=90.1
Q ss_pred CCcEEEEEeCC-------CeEEEEECCCCceEEEecCC---CC--CeEEEEEcCCCCEEEEEECC-----CeEEEEECCC
Q 003459 28 SSRVLVTGGED-------HKVNLWAIGKPNAILSLSGH---TS--GIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEE 90 (818)
Q Consensus 28 ~~~lLatgs~D-------g~V~lWdl~~~~~i~~l~~h---~~--~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~t 90 (818)
++.+++.|+.+ ..+.+||+.+.+... +... .. ........-++.+++.|+.+ ..+.+||+.+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC
Confidence 45567777653 246777876654332 2110 00 11111112245666677654 3588889887
Q ss_pred CeEEEEEcC----CCCCeEEEEEeCCCCEEEEEECCC-----cEEEEECCCCeEEEEEe-----cCCCCeEEEEEcCCCC
Q 003459 91 AKIVRTLTG----HRSNCISVDFHPFGEFFASGSLDT-----NLKIWDIRKKGCIHTYK-----GHTRGVNAIRFTPDGR 156 (818)
Q Consensus 91 ~~~v~~l~~----h~~~V~sv~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~i~~l~-----~h~~~V~~l~fspdg~ 156 (818)
.+-...-.. ....-.+++. -+++.++.|+.++ .+..||+.+.+....-. ...... .++. -+++
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~-~~~~-~~gk 330 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA-GLEV-VQGK 330 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc-EEEE-ECCc
Confidence 654322111 1111112222 2455666666543 46788887765432111 011111 2222 2567
Q ss_pred EEEEEECC----CeEEEEECCCCeEEEEEec---C-CCCEEEEEEeCCCCEEEEEeCC--------------CeEEEEEC
Q 003459 157 WVVSGGED----NTVKLWDLTAGKLLHDFKC---H-EGQIQCIDFHPHEFLLATGSAD--------------RTVKFWDL 214 (818)
Q Consensus 157 ~L~sgs~D----g~I~IwDl~t~~~i~~~~~---h-~~~I~sv~fspdg~~Lasgs~D--------------g~I~IwDl 214 (818)
.++.++.+ ..+.+||+.+.+-...-.. . .....++ ..-++++++.|+.+ ..+.+||+
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~ 409 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDT 409 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCccCCccccccCccceeccEEEEEc
Confidence 77777765 4588999987653222110 1 1111222 22356677777753 14677777
Q ss_pred CCCe
Q 003459 215 ETFE 218 (818)
Q Consensus 215 ~t~~ 218 (818)
.+.+
T Consensus 410 ~t~~ 413 (470)
T PLN02193 410 ETLQ 413 (470)
T ss_pred CcCE
Confidence 7654
No 442
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.25 E-value=7.9 Score=46.28 Aligned_cols=211 Identities=14% Similarity=0.139 Sum_probs=104.5
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE----ecCCCCeEEEEEcCCC
Q 003459 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY----KGHTRGVNAIRFTPDG 155 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l----~~h~~~V~~l~fspdg 155 (818)
--.|+||+. +|..+..+.-....+-.+.|+.+. .|++...+|++++|++-. +.+..+ ......|..+.|..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence 345788885 466666665444578899999655 566677999999999753 323221 1223345555555555
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEec---CCCCEEEEEEeCCCC---EEEEEe-CCCeEEEEECCCCe-EEEEeCCCC
Q 003459 156 RWVVSGGEDNTVKLWDLTAGKLLHDFKC---HEGQIQCIDFHPHEF---LLATGS-ADRTVKFWDLETFE-LIGSAGPET 227 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~~---h~~~I~sv~fspdg~---~Lasgs-~Dg~I~IwDl~t~~-~i~~~~~~~ 227 (818)
+++-..+|.+.+..-.....+..+.. ..-.-.|-...+++. .++--. ..+ ..++...... ....+....
T Consensus 140 --Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~ 216 (829)
T KOG2280|consen 140 --VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPN 216 (829)
T ss_pred --eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCC
Confidence 34444456655543322222333322 111112222222211 111111 011 1122222111 122222234
Q ss_pred CCeeEEEEeCCCCEEEEEE-CCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 228 SGVRCLTFNPDGRTLLCGL-HESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
+.+..+..||++++|+-=. .|.+.+-+.+..++.-.++..-.. --+.++-+++|..+.+|..+..-..|
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~-------~p~qm~WcgndaVvl~~e~~l~lvgp 286 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHD-------PPKQMAWCGNDAVVLSWEVNLMLVGP 286 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCC-------chHhceeecCCceEEEEeeeEEEEcC
Confidence 5678889999999998654 445666677766655444322111 01244445556666666655444333
No 443
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.08 E-value=2.9 Score=47.63 Aligned_cols=138 Identities=13% Similarity=0.133 Sum_probs=91.5
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-------EEEEEECCCeEEEEECCC-CeEEEE--EecC-
Q 003459 116 FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-------WVVSGGEDNTVKLWDLTA-GKLLHD--FKCH- 184 (818)
Q Consensus 116 Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~-------~L~sgs~Dg~I~IwDl~t-~~~i~~--~~~h- 184 (818)
+..|.....++-.|+..|+.+..+..|..- -+.|.|+.+ .-++|-.+..|.-.|.+- |..+.. ++..
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~ 560 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYK 560 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcc
Confidence 334555667888899999999999887764 577887432 223444566666667653 333322 2211
Q ss_pred -CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 185 -EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 185 -~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
.....+..-. ..-++|+++..|-|++||--.......+.+....|..+..+.+|+++++.+...+-+.|..
T Consensus 561 tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 561 TKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred ccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 1122232222 2348999999999999996544444445666788999999999999999888877776654
No 444
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.07 E-value=10 Score=44.32 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=84.6
Q ss_pred EEEEE---ECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC---e
Q 003459 73 LVAAG---AASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG---V 146 (818)
Q Consensus 73 ~Lasg---s~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~---V 146 (818)
+++.. ...+...++|. .|.+...+.........+.+.++|.+++... ..++.+|+. |+.+..+...... =
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~H 192 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFH 192 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccc
Confidence 45554 34566777774 4666666653222222266778888776655 789999985 6666665533321 3
Q ss_pred EEEEEcCCCCEEEEEEC-------------CCeEEEEECCCCeEEEEEec--CC-------------------------C
Q 003459 147 NAIRFTPDGRWVVSGGE-------------DNTVKLWDLTAGKLLHDFKC--HE-------------------------G 186 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~-------------Dg~I~IwDl~t~~~i~~~~~--h~-------------------------~ 186 (818)
..+.+.|+|++|+.+.. .-.|..+| .+|+.+..+.. |- -
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~ 271 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWL 271 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS-
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCcc
Confidence 46778899999998872 23467778 88888877542 11 1
Q ss_pred CEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC
Q 003459 187 QIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (818)
Q Consensus 187 ~I~sv~fsp-dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~ 228 (818)
-++++.+.+ ++.+|+++-.-..|...|.++++....+..+..
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCC
Confidence 278999999 555555555556899999999998888876643
No 445
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.82 E-value=32 Score=38.67 Aligned_cols=53 Identities=13% Similarity=0.283 Sum_probs=26.4
Q ss_pred CCCEEEEEECC-----------CcEEEEECCCCeEEEEEecCCCCe--EEEEEcCCCCEEEEEECC
Q 003459 112 FGEFFASGSLD-----------TNLKIWDIRKKGCIHTYKGHTRGV--NAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 112 dg~~Lasgs~D-----------g~I~IwDl~~~~~i~~l~~h~~~V--~~l~fspdg~~L~sgs~D 164 (818)
++..++.|+.+ ..+..||..+.+....-....... .+....-+++..+.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 45666666643 247788987765433211101111 112221367777777754
No 446
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.76 E-value=28 Score=39.22 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=19.5
Q ss_pred cEEEEECCCCeEEEEEecCC--CCeEEEEEcCCCCEEEEEEC
Q 003459 124 NLKIWDIRKKGCIHTYKGHT--RGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 124 ~I~IwDl~~~~~i~~l~~h~--~~V~~l~fspdg~~L~sgs~ 163 (818)
.+.+||..+......-.... ..-.++... +++..+.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 58889987765543211111 112233333 5666666664
No 447
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.18 E-value=0.61 Score=52.05 Aligned_cols=175 Identities=13% Similarity=0.117 Sum_probs=108.2
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE-EEEe-cCCC----CeE-EEEEcCCCCEEEEEECCCeEE
Q 003459 96 TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYK-GHTR----GVN-AIRFTPDGRWVVSGGEDNTVK 168 (818)
Q Consensus 96 ~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i-~~l~-~h~~----~V~-~l~fspdg~~L~sgs~Dg~I~ 168 (818)
.+......+..+-..|+|+.+..-+. ..+.++++.+.... .++- ...+ .|+ .+..-..|..+++++.||.|.
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 34444556777888999998777654 67888888654321 1111 1011 121 122223566788899999887
Q ss_pred EE-ECCCCe-----EEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEE
Q 003459 169 LW-DLTAGK-----LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 242 (818)
Q Consensus 169 Iw-Dl~t~~-----~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~L 242 (818)
-| |.+.+. .+..++.....+..+.-..+.+-+++-+.+|++..+....-+.+-.. ..-..+.-+++||.+.+|
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-~~~~~~~~~~~Sp~~~~L 372 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-RAYQAPQLVAMSPNQAYL 372 (733)
T ss_pred eeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-hhhcCcceeeeCcccchh
Confidence 66 655432 22333333344444433334566777788888888775554443322 222356788999999999
Q ss_pred EEEECCCEEEEEecCCceecccccccccee
Q 003459 243 LCGLHESLKVFSWEPIRCHDAVDVGWSRLS 272 (818)
Q Consensus 243 asgs~d~I~Vwd~~~~~~~~~~~~~~~~v~ 272 (818)
++-..++++++.++.....-.+..-|.++.
T Consensus 373 l~e~~gki~~~~l~Nr~PeiswsaLWqkvW 402 (733)
T COG4590 373 LSEDQGKIRLAQLENRNPEISWSALWQKVW 402 (733)
T ss_pred eeecCCceEEEEecCCCCCccHHHhhhhhh
Confidence 998888999999998776666666665543
No 448
>PLN02153 epithiospecifier protein
Probab=90.18 E-value=34 Score=37.85 Aligned_cols=187 Identities=14% Similarity=0.176 Sum_probs=89.6
Q ss_pred CCcEEEEEeCC-------CeEEEEECCCCceEEEec-CC--CC---CeEEEEEcCCCCEEEEEECC-----CeEEEEECC
Q 003459 28 SSRVLVTGGED-------HKVNLWAIGKPNAILSLS-GH--TS---GIDSVSFDSSEVLVAAGAAS-----GTIKLWDLE 89 (818)
Q Consensus 28 ~~~lLatgs~D-------g~V~lWdl~~~~~i~~l~-~h--~~---~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~ 89 (818)
++.+++.|+.+ ..+.+||+.+.+....-. +. .. ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45677777753 257788887654332111 00 00 1122222 45666777653 357888987
Q ss_pred CCeEEE--EEcC---CCCC-eEEEEEeCCCCEEEEEECC-----------CcEEEEECCCCeEEEEEec----CCCCeEE
Q 003459 90 EAKIVR--TLTG---HRSN-CISVDFHPFGEFFASGSLD-----------TNLKIWDIRKKGCIHTYKG----HTRGVNA 148 (818)
Q Consensus 90 t~~~v~--~l~~---h~~~-V~sv~fspdg~~Lasgs~D-----------g~I~IwDl~~~~~i~~l~~----h~~~V~~ 148 (818)
+.+-.. .+.. .... -.+++. -+++.++.|+.+ ..|.+||..+.+....-.. ....-.+
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~ 188 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAG 188 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcce
Confidence 754322 1110 0111 122222 245666666643 2477889887654321110 0111112
Q ss_pred EEEcCCCCEEEEEECC-------------CeEEEEECCCCeEEEEEe-c--CCCCEEEEEEeCCCCEEEEEeCC------
Q 003459 149 IRFTPDGRWVVSGGED-------------NTVKLWDLTAGKLLHDFK-C--HEGQIQCIDFHPHEFLLATGSAD------ 206 (818)
Q Consensus 149 l~fspdg~~L~sgs~D-------------g~I~IwDl~t~~~i~~~~-~--h~~~I~sv~fspdg~~Lasgs~D------ 206 (818)
++. -+++.++.++.+ ..+.+||+.+.+-...-. + ........+...++.+++.|+..
T Consensus 189 ~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 267 (341)
T PLN02153 189 FAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKG 267 (341)
T ss_pred EEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccc
Confidence 222 256666655432 358889987654322111 0 11111111222356777887742
Q ss_pred --------CeEEEEECCCCe
Q 003459 207 --------RTVKFWDLETFE 218 (818)
Q Consensus 207 --------g~I~IwDl~t~~ 218 (818)
..+..||+.+.+
T Consensus 268 ~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 268 HLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred ccccccccccEEEEEcCccE
Confidence 257888887654
No 449
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.14 E-value=6.2 Score=48.24 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
-.|..|.++++|.+|+..|..| |.|-.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~L 112 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLEL 112 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEe
Confidence 4588889999999999988766 444444
No 450
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=90.07 E-value=13 Score=38.08 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=102.1
Q ss_pred EEEEeeCCCcEEEEEeCC--CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEE
Q 003459 21 CLKIGRKSSRVLVTGGED--HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 21 ~lafsp~~~~lLatgs~D--g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~t~~~v~~l 97 (818)
.+.+- ++.++.+.+.- ..|++||+.+++.+.+..-....+..=-...-+.++ ...-.+|.-..+|..+-+++..+
T Consensus 50 GL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 50 GLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred ceeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccc
Confidence 34443 55666666543 469999999998887655322222211111122222 23356888899999888887776
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE----ecC-CCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY----KGH-TRGVNAIRFTPDGRWVVSGGEDNTVKLWDL 172 (818)
Q Consensus 98 ~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l----~~h-~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl 172 (818)
. ..+.-+.++. +++.|+.++...+++.-|..+.....++ .+. -..++-+.|- ||...+-.-.+..|...|.
T Consensus 128 ~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 128 S-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP 203 (262)
T ss_pred c-cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcC
Confidence 6 3344455543 5666777766667777776654333222 211 1223334443 5555555555556666677
Q ss_pred CCCeEEEEEe------------cCCCCEEEEEEeCCC-CEEEEE
Q 003459 173 TAGKLLHDFK------------CHEGQIQCIDFHPHE-FLLATG 203 (818)
Q Consensus 173 ~t~~~i~~~~------------~h~~~I~sv~fspdg-~~Lasg 203 (818)
.+|+.+..+. .+..-.+.+++.|++ +++++|
T Consensus 204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 7777665543 234467889999986 555555
No 451
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.95 E-value=35 Score=37.71 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCCEEEEEECC-----------CcEEEEECCCCeEEEEEecCCCCeE--EEEEcCCCCEEEEEECC
Q 003459 112 FGEFFASGSLD-----------TNLKIWDIRKKGCIHTYKGHTRGVN--AIRFTPDGRWVVSGGED 164 (818)
Q Consensus 112 dg~~Lasgs~D-----------g~I~IwDl~~~~~i~~l~~h~~~V~--~l~fspdg~~L~sgs~D 164 (818)
++...+.|+.+ ..+..||..+.+....-........ +....-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 46666666642 2477888877654332111111111 11112367777777754
No 452
>PLN02153 epithiospecifier protein
Probab=89.86 E-value=36 Score=37.66 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=52.1
Q ss_pred CCCEEEEEECC-----CcEEEEECCCCeEEEE--Eec---CCCC-eEEEEEcCCCCEEEEEECC-----------CeEEE
Q 003459 112 FGEFFASGSLD-----TNLKIWDIRKKGCIHT--YKG---HTRG-VNAIRFTPDGRWVVSGGED-----------NTVKL 169 (818)
Q Consensus 112 dg~~Lasgs~D-----g~I~IwDl~~~~~i~~--l~~---h~~~-V~~l~fspdg~~L~sgs~D-----------g~I~I 169 (818)
++.+++.|+.+ ..+.+||+.+.+.... +.. .... -.+++. -+++.++.|+.+ ..|.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence 35566666643 3578899887654321 110 1111 122222 356667777653 24778
Q ss_pred EECCCCeEEEEEecC----CCC-EEEEEEeCCCCEEEEEeCC-------------CeEEEEECCCCeE
Q 003459 170 WDLTAGKLLHDFKCH----EGQ-IQCIDFHPHEFLLATGSAD-------------RTVKFWDLETFEL 219 (818)
Q Consensus 170 wDl~t~~~i~~~~~h----~~~-I~sv~fspdg~~Lasgs~D-------------g~I~IwDl~t~~~ 219 (818)
||..+.+-.. +... ... -.+++. -++++++.|+.+ ..+.+||+.+.+-
T Consensus 164 yd~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W 229 (341)
T PLN02153 164 YNIADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW 229 (341)
T ss_pred EECCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE
Confidence 8887654221 1111 111 112222 355666655432 4588899887543
No 453
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=89.83 E-value=25 Score=41.07 Aligned_cols=268 Identities=16% Similarity=0.115 Sum_probs=131.7
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~-~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~ 93 (818)
-..+|..+.+.- .+ .+..|..|| +..||..+++.+..-.... .+|..+..+-.+. +.+|+.+| |++.+.+....
T Consensus 163 ~d~~V~aLv~D~-~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~~ 237 (671)
T COG3292 163 KDTPVVALVFDA-NG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWRA 237 (671)
T ss_pred cCccceeeeeec-cC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhccc
Confidence 345777888876 33 477888888 7778877777666544333 5666666665665 55777777 77777665222
Q ss_pred EEEEcC-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE-EEEEecCC--CCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 94 VRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYKGHT--RGVNAIRFTPDGRWVVSGGEDNTVKL 169 (818)
Q Consensus 94 v~~l~~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~-i~~l~~h~--~~V~~l~fspdg~~L~sgs~Dg~I~I 169 (818)
...... ....|..+.-..+| ++..|+.+|..+. ....+.. +...+.|. ..|.++-...+|. |-+++.+|.+++
T Consensus 238 sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~ 314 (671)
T COG3292 238 SNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRY 314 (671)
T ss_pred cccCCCCcchheeeeecccCC-CEEEeecccceeE-ecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEE
Confidence 211111 12334443333333 5666777664332 3332222 22222222 3456666666665 666666666655
Q ss_pred EECCCCeEEEEEecCCCC-EEEEEEeC--CCCEEEEEeCCCeEEEEECCCCeEEEEe-CCCCCCeeEEEEeCCCCEEEEE
Q 003459 170 WDLTAGKLLHDFKCHEGQ-IQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSA-GPETSGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 170 wDl~t~~~i~~~~~h~~~-I~sv~fsp--dg~~Lasgs~Dg~I~IwDl~t~~~i~~~-~~~~~~I~sl~fspdg~~Lasg 245 (818)
-+.. .+....+....+. +..++..| .+..+-....-|.+.+-+-.++..+... +.....|+.+++..+|..-+..
T Consensus 315 ~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs 393 (671)
T COG3292 315 LTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGS 393 (671)
T ss_pred ecch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEe
Confidence 4432 2222222222111 11112222 1112222222334444444555544432 2223456777777766665555
Q ss_pred ECCCEEEEEecC-Cceeccccc-cccceeeee-ecCCCEEEEEEcCCeEE
Q 003459 246 LHESLKVFSWEP-IRCHDAVDV-GWSRLSDLN-VHEGKLLGCSYNQSCVG 292 (818)
Q Consensus 246 s~d~I~Vwd~~~-~~~~~~~~~-~~~~v~~l~-~~~g~lLatg~~Dg~V~ 292 (818)
..+++.-|+-+. ...++.... ..+.+..+. -++++ |..|..+|-++
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 555777776555 222222221 122222222 24555 66666666543
No 454
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=89.34 E-value=36 Score=36.95 Aligned_cols=163 Identities=13% Similarity=0.196 Sum_probs=93.2
Q ss_pred eEEEEECCCCceEEEecC------CCCCeEEEEEcCCC-----CEEEEEEC-CCeEEEEECCCCeEEEEEcCCC------
Q 003459 40 KVNLWAIGKPNAILSLSG------HTSGIDSVSFDSSE-----VLVAAGAA-SGTIKLWDLEEAKIVRTLTGHR------ 101 (818)
Q Consensus 40 ~V~lWdl~~~~~i~~l~~------h~~~V~~l~fspdg-----~~Lasgs~-DG~I~IWDl~t~~~v~~l~~h~------ 101 (818)
+|.+||+.+++.++.+.- ..+.+..+.+.... .+++.+.. .+-|.++|+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 799999999998887653 24567788886522 24444433 4689999999998877765322
Q ss_pred -------------CCeEEEEEeC---CCCEEEEEECCCcEEEEECCC-----C---------eEEEEEecCCCCeEEEEE
Q 003459 102 -------------SNCISVDFHP---FGEFFASGSLDTNLKIWDIRK-----K---------GCIHTYKGHTRGVNAIRF 151 (818)
Q Consensus 102 -------------~~V~sv~fsp---dg~~Lasgs~Dg~I~IwDl~~-----~---------~~i~~l~~h~~~V~~l~f 151 (818)
..+..++.+| +++.|......+ -++|-+.+ . ..+..+.........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 1244445544 444555444333 12232211 0 012222212245667889
Q ss_pred cCCCCEEEEEECCCeEEEEECCCC----eEEEEEecC--CCCEEEEEEeC--CCCEEEEE
Q 003459 152 TPDGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCH--EGQIQCIDFHP--HEFLLATG 203 (818)
Q Consensus 152 spdg~~L~sgs~Dg~I~IwDl~t~----~~i~~~~~h--~~~I~sv~fsp--dg~~Lasg 203 (818)
+++|..+++--..+.|..||.... ......... -..+..+.+.+ +|.+.+..
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 999998888889999999998861 111112222 24678888888 66555544
No 455
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.20 E-value=11 Score=47.80 Aligned_cols=232 Identities=16% Similarity=0.156 Sum_probs=109.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCC-CeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEE
Q 003459 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS-NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH 137 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~-~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~ 137 (818)
......++|++...+++.|..+|.|+++-...-+.......... .+..+.|-...........+..+.+|.......+.
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~ 114 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF 114 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee
Confidence 34566789999999999999999999998654333322221110 22222222222233334445556666543322221
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCEEEE-EEeCCCCEEEEEeCCCeEEEEEC
Q 003459 138 TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCI-DFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 138 ~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sv-~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
+...+.+....+--.+ +-+ ..+.+++||..-.. ...+. ......... .+.+...-+..--.+-.-.+|.+
T Consensus 115 ----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 187 (993)
T KOG1983|consen 115 ----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQ-LSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL 187 (993)
T ss_pred ----cCCcceeccCCCCcch-hcc-cCceeeEeeechhh-hccceeccccccccceeeeeccceeeeccccccccceeec
Confidence 2233444443333334 445 78888888865321 11111 000000000 01110000000000111111111
Q ss_pred CCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEE
Q 003459 215 ETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 215 ~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IW 294 (818)
..-. ..+..+...+.+..+......+..+....+.+|+.........+..... +...++..++++..||.+.+|
T Consensus 188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~v~~h~Dgs~~fW 261 (993)
T KOG1983|consen 188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ----LESRDGSHFVSYHTDGSYAFW 261 (993)
T ss_pred cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc----cCccCCceEEEEEecCCEEee
Confidence 1111 1222334455566555555555555444455555444332222211111 114678999999999999999
Q ss_pred EecCCCcee
Q 003459 295 VVDISRIEP 303 (818)
Q Consensus 295 dvd~~~~~~ 303 (818)
|++.+..+.
T Consensus 262 d~s~g~~~~ 270 (993)
T KOG1983|consen 262 DVSSGKLQI 270 (993)
T ss_pred ecCCCceee
Confidence 999987744
No 456
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=89.16 E-value=59 Score=39.20 Aligned_cols=237 Identities=13% Similarity=0.188 Sum_probs=124.4
Q ss_pred EEeeCCCcEEEEEeCCCeEEEEEC-CCCceEEEec-CCCCCeEEEEEcCC---CCEEEEEECCCe-EEEEECCCC-----
Q 003459 23 KIGRKSSRVLVTGGEDHKVNLWAI-GKPNAILSLS-GHTSGIDSVSFDSS---EVLVAAGAASGT-IKLWDLEEA----- 91 (818)
Q Consensus 23 afsp~~~~lLatgs~Dg~V~lWdl-~~~~~i~~l~-~h~~~V~~l~fspd---g~~Lasgs~DG~-I~IWDl~t~----- 91 (818)
.++|+.. .+-.|=....|--|=+ .+++.++.+. ..+..|.|+..... .++.++|-.++. -++..+..+
T Consensus 34 ~~s~~sn-~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~ 112 (670)
T PF10395_consen 34 DFSPDSN-QIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTE 112 (670)
T ss_pred ccCCCCc-eEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcccc
Confidence 4566333 3333433334544444 4677777665 34566777766432 235555534433 343333222
Q ss_pred ------e--EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe--EEEEEec-CCCCeEEEEEcC------C
Q 003459 92 ------K--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG--CIHTYKG-HTRGVNAIRFTP------D 154 (818)
Q Consensus 92 ------~--~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~--~i~~l~~-h~~~V~~l~fsp------d 154 (818)
+ ....+. -...|..+.|..+++.+++...+|.|.+||...+. .+..+.. +...+.--+|-+ .
T Consensus 113 ~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~ 191 (670)
T PF10395_consen 113 DGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENG 191 (670)
T ss_pred ccccCccccceEEEE-cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccC
Confidence 1 111222 35678899999999999999999999999993222 1112211 121111112222 2
Q ss_pred CCEEEEEEC-CC---eEEEEEC-CCCeEEEEEe---cCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeEEEEeCC
Q 003459 155 GRWVVSGGE-DN---TVKLWDL-TAGKLLHDFK---CHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGP 225 (818)
Q Consensus 155 g~~L~sgs~-Dg---~I~IwDl-~t~~~i~~~~---~h~~~I~sv~fsp-dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~ 225 (818)
..++++.+. ++ ..+++.+ .....+.++. .+........|.- +|.+... .+++|.+|++..++...++.-
T Consensus 192 ~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l 269 (670)
T PF10395_consen 192 KDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISL 269 (670)
T ss_pred CceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEe
Confidence 334444443 22 4667777 1223333332 1222233333333 4544444 578999999999887766532
Q ss_pred C-----C-CCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccc
Q 003459 226 E-----T-SGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV 264 (818)
Q Consensus 226 ~-----~-~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~ 264 (818)
. . ..+.++. .|....++.+..+.|.+.|+.-......+
T Consensus 270 ~~ii~~~~~~~vSl~-~~s~nRvLLs~~nkIyLld~~~~siLse~ 313 (670)
T PF10395_consen 270 PSIIDKESDDLVSLK-PPSPNRVLLSVNNKIYLLDLKFESILSEF 313 (670)
T ss_pred chhhccccccceEee-cCCCCeEEEEcCCEEEEEeehhhhhhhhh
Confidence 2 1 2333443 23444566666788889888655444333
No 457
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=89.04 E-value=37 Score=36.67 Aligned_cols=151 Identities=13% Similarity=0.135 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC--CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe--
Q 003459 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-- 134 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~--h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-- 134 (818)
.+-+..+.++ +++.+.+..+.-++|.|+.+...-..+.. ..+--.+ |.-.|++..++..|.-+.++|+.+..
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCc
Confidence 3455666665 45666667777799999987543322221 1122333 44458998888877768888886543
Q ss_pred -EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003459 135 -CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK---LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVK 210 (818)
Q Consensus 135 -~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~ 210 (818)
....+.........++.+ |++-+.+..|+-+.+.|+.... .+.... ....+.++..+++..+++.. +.-+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egvl 236 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGVL 236 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccceE
Confidence 344454444555677776 7888888899999999997643 333333 23377888888776666665 34477
Q ss_pred EEECCCCe
Q 003459 211 FWDLETFE 218 (818)
Q Consensus 211 IwDl~t~~ 218 (818)
+-|..+.+
T Consensus 237 ivd~s~~s 244 (370)
T COG5276 237 IVDVSGPS 244 (370)
T ss_pred EEecCCCC
Confidence 77777655
No 458
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.87 E-value=21 Score=44.37 Aligned_cols=249 Identities=15% Similarity=0.042 Sum_probs=117.3
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEE---E------ec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 29 SRVLVTGGEDHKVNLWAIGKPNAIL---S------LS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 29 ~~lLatgs~Dg~V~lWdl~~~~~i~---~------l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (818)
++.+..|+.+|.+.+|.+....... . +. -+..+|..+...+...++++- .|+.|.++++.+-+.....
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~~~~~ 104 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEPVPSG 104 (877)
T ss_pred CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcccccccc
Confidence 4578999999999999885431110 0 10 124566666666655555554 4677888887765542211
Q ss_pred cCCCCCeEEEEEe----CCC--CEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 98 TGHRSNCISVDFH----PFG--EFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (818)
Q Consensus 98 ~~h~~~V~sv~fs----pdg--~~Lasgs~--Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~I 169 (818)
. +-.++...++. ..| .+.++.+. -.....|+-+.+-.+..--+-.....+++|. |..+.++-.+....+
T Consensus 105 ~-~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~c~~~~~~~~ii 181 (877)
T KOG2063|consen 105 T-RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWC--GHIVCLGLKKSYYII 181 (877)
T ss_pred c-ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhccc--ceeEEEeecceeEEE
Confidence 1 11111111111 112 23333332 1223345544443333322223333444443 555555554444444
Q ss_pred EECCCCeEEEEEe-cC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE-EEeCCCCCCeeEEEEeCCCCEEEEE
Q 003459 170 WDLTAGKLLHDFK-CH--EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI-GSAGPETSGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 170 wDl~t~~~i~~~~-~h--~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i-~~~~~~~~~I~sl~fspdg~~Lasg 245 (818)
|.-.++.....+- +. ...-..|.-..++..++.| .|+...+-|.. |... ...-.-......+.+ +..|+++-
T Consensus 182 ~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~-G~~~~~~~l~ws~~P~~v~~--~~PYlIa~ 257 (877)
T KOG2063|consen 182 NNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLN-GIIAQRGTLVWSEVPLSVVV--ESPYLIAL 257 (877)
T ss_pred ecCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecC-CcccCCCceEecccchhhcc--cCceEEEE
Confidence 5444442111111 10 1111234444566566665 56677777744 3321 100000111122222 45677777
Q ss_pred ECCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEE
Q 003459 246 LHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSY 286 (818)
Q Consensus 246 s~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~ 286 (818)
.+..+.||+..+..+.+.+. ..+....+...++..+.+..
T Consensus 258 ~~~~veI~s~~~~qlvQSI~-~~~~~~~l~s~~~~i~~~~~ 297 (877)
T KOG2063|consen 258 LDRSVEIRSKLDGQLVQSIT-PLSNGRSLLSAHNGIIFVAS 297 (877)
T ss_pred ccccEEEEeccCHHHhhccc-cccccceeeecCCcEEEEEe
Confidence 77789999999887766653 33333344433334444443
No 459
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.61 E-value=15 Score=35.00 Aligned_cols=114 Identities=16% Similarity=0.241 Sum_probs=73.9
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCC--------eEEEEEcCCCCCeEEEEEeCC-----CCEEEEEECCCcEEEEEC
Q 003459 64 SVSFDSSEVLVAAGAASGTIKLWDLEEA--------KIVRTLTGHRSNCISVDFHPF-----GEFFASGSLDTNLKIWDI 130 (818)
Q Consensus 64 ~l~fspdg~~Lasgs~DG~I~IWDl~t~--------~~v~~l~~h~~~V~sv~fspd-----g~~Lasgs~Dg~I~IwDl 130 (818)
.-.|......|++++.-|+|.|++.... ..+..+. ....|++++-.+- .+.|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 4466666678888999999999987633 2344444 5567777765542 34677775 566999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcC----CCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 131 RKKGCIHTYKGHTRGVNAIRFTP----DGRWVVSGGEDNTVKLWDLTAGKLLHDF 181 (818)
Q Consensus 131 ~~~~~i~~l~~h~~~V~~l~fsp----dg~~L~sgs~Dg~I~IwDl~t~~~i~~~ 181 (818)
....-+..-. -...|.++.+-. +.. ++..+.+..|.-||..-.+..++.
T Consensus 81 ~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~-l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKE-VPDGVNAIVIGKLGDIPSP-LVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhh-CccceeEEEEEecCCCCCc-EEEECceEEEEEeCCCCcEEEEEe
Confidence 8776554333 346688887743 233 444445677888887655555544
No 460
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.60 E-value=27 Score=38.62 Aligned_cols=142 Identities=19% Similarity=0.314 Sum_probs=86.7
Q ss_pred CCeEEEEEeCCCCEEEEEECCCc------EEEEECCCC----eEEE-----EEecCCC--------CeEEEEEcCCCCEE
Q 003459 102 SNCISVDFHPFGEFFASGSLDTN------LKIWDIRKK----GCIH-----TYKGHTR--------GVNAIRFTPDGRWV 158 (818)
Q Consensus 102 ~~V~sv~fspdg~~Lasgs~Dg~------I~IwDl~~~----~~i~-----~l~~h~~--------~V~~l~fspdg~~L 158 (818)
+.+..+.+.+++..+++.+.+|. ++.+++... ..+. .+....+ ...+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 46778888876667777777777 666665431 1111 1111111 34578887788877
Q ss_pred EEEECC------CeEEEEECCCCeEEEEEe---------------cCCCCEEEEEEeCCCCEEEEEeCC-----C--e--
Q 003459 159 VSGGED------NTVKLWDLTAGKLLHDFK---------------CHEGQIQCIDFHPHEFLLATGSAD-----R--T-- 208 (818)
Q Consensus 159 ~sgs~D------g~I~IwDl~t~~~i~~~~---------------~h~~~I~sv~fspdg~~Lasgs~D-----g--~-- 208 (818)
++.-.+ ..|+.+|.. |+.+..+. ......-+++++|+|..|+++.+. + .
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 776666 788888876 66554441 123457899999999966665432 2 1
Q ss_pred -----EEE--EECCC-CeE----EEEeCC-----CCCCeeEEEEeCCCCEEEE
Q 003459 209 -----VKF--WDLET-FEL----IGSAGP-----ETSGVRCLTFNPDGRTLLC 244 (818)
Q Consensus 209 -----I~I--wDl~t-~~~----i~~~~~-----~~~~I~sl~fspdg~~Las 244 (818)
+++ ||..+ ++. ...+.. ....|..+.+-+++++|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444 45544 222 222332 3567888888888887774
No 461
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=88.30 E-value=68 Score=38.84 Aligned_cols=286 Identities=15% Similarity=0.205 Sum_probs=140.9
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCC--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC------CCe
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA------SGT 82 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg--~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~------DG~ 82 (818)
.+..+...+..+.|+|++ .+++..+.++ ...+|-+.... .+..+...+....|++++..++.... ++.
T Consensus 54 ~~~~~~~~~~~~~~spdg-~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~ 129 (620)
T COG1506 54 RLLTFGGGVSELRWSPDG-SVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGG 129 (620)
T ss_pred cccccCCcccccccCCCC-CEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccCCc
Confidence 456677888999999955 4555554222 23344332221 33445667888899998887776211 222
Q ss_pred -------EEEEECCCC-eE-----------EEEEcCCCCCeEEEEEeCCCCEEEEEECCCc-------EEEEECCCCeEE
Q 003459 83 -------IKLWDLEEA-KI-----------VRTLTGHRSNCISVDFHPFGEFFASGSLDTN-------LKIWDIRKKGCI 136 (818)
Q Consensus 83 -------I~IWDl~t~-~~-----------v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~-------I~IwDl~~~~~i 136 (818)
+.+|....+ .. ..........+....+++++..++....+.. ..++.. ....+
T Consensus 130 ~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 208 (620)
T COG1506 130 DHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGEL 208 (620)
T ss_pred eeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCce
Confidence 334433333 11 1112223445666667766666665544432 333333 23334
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCC--------eEEEEECCCCeEEEEEecCC--CCEEEEEE-eCCCCEEEEEeC
Q 003459 137 HTYKGHTRGVNAIRFTPDGRWVVSGGEDN--------TVKLWDLTAGKLLHDFKCHE--GQIQCIDF-HPHEFLLATGSA 205 (818)
Q Consensus 137 ~~l~~h~~~V~~l~fspdg~~L~sgs~Dg--------~I~IwDl~t~~~i~~~~~h~--~~I~sv~f-spdg~~Lasgs~ 205 (818)
..+......+..+.|.++|+.++..+... .+.+++...++......... .....+.+ -+++..++++..
T Consensus 209 ~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (620)
T COG1506 209 ESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATD 288 (620)
T ss_pred EEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccccCCCcEEEEEec
Confidence 44444556688899999998555444322 23444422222222011000 00001111 123334444443
Q ss_pred -CCeEEEEECCCCe-EEEEeCCCCCCeeEEEEeCCCCEEEEEECC---CEEEEEecCCceeccccccccceeeeeecCCC
Q 003459 206 -DRTVKFWDLETFE-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE---SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK 280 (818)
Q Consensus 206 -Dg~I~IwDl~t~~-~i~~~~~~~~~I~sl~fspdg~~Lasgs~d---~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~ 280 (818)
.|...++...... ...........+..+.+ ++..+++...+ --.+|-+..+............+.......-+
T Consensus 289 ~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e 366 (620)
T COG1506 289 GGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDRGEEAKLTSSNNSGLKKVKLAEPE 366 (620)
T ss_pred CCCceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcCCCceEEeecccccccccccCCce
Confidence 5667777665322 22223334455666665 67666654322 23444443232222222222222333344556
Q ss_pred EEEEEEcCC-eEEEEEecCCCcee
Q 003459 281 LLGCSYNQS-CVGVWVVDISRIEP 303 (818)
Q Consensus 281 lLatg~~Dg-~V~IWdvd~~~~~~ 303 (818)
.+...+.|| .|.-|-+......+
T Consensus 367 ~~~~~~~dG~~i~~~l~~P~~~~~ 390 (620)
T COG1506 367 PVTYKSNDGETIHGWLYKPPGFDP 390 (620)
T ss_pred EEEEEcCCCCEEEEEEecCCCCCC
Confidence 677777777 88888776655543
No 462
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=88.11 E-value=46 Score=36.70 Aligned_cols=142 Identities=18% Similarity=0.325 Sum_probs=86.6
Q ss_pred CCeEEEEEcCCCCEEEEEECCCe------EEEEECCC--C--eEEE-----EEcCCCC--------CeEEEEEeCCCCEE
Q 003459 60 SGIDSVSFDSSEVLVAAGAASGT------IKLWDLEE--A--KIVR-----TLTGHRS--------NCISVDFHPFGEFF 116 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~------I~IWDl~t--~--~~v~-----~l~~h~~--------~V~sv~fspdg~~L 116 (818)
+.+..|.+.+++..+++.+.+|. +..+++.. + ..+. .+....+ ..-+|++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 46778888865556666677777 66555543 1 1111 1111111 33478887788888
Q ss_pred EEEECC------CcEEEEECCCCeEEEEEe---------------cCCCCeEEEEEcCCCCEEEEEECCC----------
Q 003459 117 ASGSLD------TNLKIWDIRKKGCIHTYK---------------GHTRGVNAIRFTPDGRWVVSGGEDN---------- 165 (818)
Q Consensus 117 asgs~D------g~I~IwDl~~~~~i~~l~---------------~h~~~V~~l~fspdg~~L~sgs~Dg---------- 165 (818)
++.-.+ ..|+.++.. ++.+..+. ..+....+|+++|+|+.|+++.+..
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 877667 788888876 55544431 1345688999999999777765432
Q ss_pred ------eEEEEECCC-CeEEEEE----ec-----CCCCEEEEEEeCCCCEEEE
Q 003459 166 ------TVKLWDLTA-GKLLHDF----KC-----HEGQIQCIDFHPHEFLLAT 202 (818)
Q Consensus 166 ------~I~IwDl~t-~~~i~~~----~~-----h~~~I~sv~fspdg~~Las 202 (818)
.|..||..+ +.....+ .. ....|..+.+.+++.+|+.
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 244455554 3223222 21 2456888999999987765
No 463
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.90 E-value=12 Score=45.15 Aligned_cols=111 Identities=14% Similarity=0.200 Sum_probs=73.5
Q ss_pred eEEEEEc--CCCCEEEEEECCCeEEEEECCC-------C----e---------EEEEEcCCCCCeEEEEEe--CCCCEEE
Q 003459 62 IDSVSFD--SSEVLVAAGAASGTIKLWDLEE-------A----K---------IVRTLTGHRSNCISVDFH--PFGEFFA 117 (818)
Q Consensus 62 V~~l~fs--pdg~~Lasgs~DG~I~IWDl~t-------~----~---------~v~~l~~h~~~V~sv~fs--pdg~~La 117 (818)
|+.|... .+...|+.+..||.|.+|.+++ . + +...+. ....+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 5555443 3556888999999999997521 1 0 111222 34578999998 7778888
Q ss_pred EEECCCcEEEEECCCC--eEEE-EEecCCCCeEEEEEcCCC-----C-EEEEEECCCeEEEEECC
Q 003459 118 SGSLDTNLKIWDIRKK--GCIH-TYKGHTRGVNAIRFTPDG-----R-WVVSGGEDNTVKLWDLT 173 (818)
Q Consensus 118 sgs~Dg~I~IwDl~~~--~~i~-~l~~h~~~V~~l~fspdg-----~-~L~sgs~Dg~I~IwDl~ 173 (818)
+++....|.||-.... +... .-..|...|-+|+|-++. . ++++++-.|.+.+|++.
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 8888888887755431 1111 111256678999997732 2 78888999999998873
No 464
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.87 E-value=22 Score=41.60 Aligned_cols=144 Identities=16% Similarity=0.120 Sum_probs=78.0
Q ss_pred CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCC---CeEEEEEeCCC
Q 003459 37 EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRS---NCISVDFHPFG 113 (818)
Q Consensus 37 ~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~---~V~sv~fspdg 113 (818)
..+...++|. +|.....+.........+.+.++|.+++... +.+..+|+. |+.+..+.-... .-..+.+.|+|
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCC
Confidence 4556677774 4565555543222222266778998886554 789999985 666655542221 13467788999
Q ss_pred CEEEEEEC-------------CCcEEEEECCCCeEEEEEec--CC-------------------------CCeEEEEEcC
Q 003459 114 EFFASGSL-------------DTNLKIWDIRKKGCIHTYKG--HT-------------------------RGVNAIRFTP 153 (818)
Q Consensus 114 ~~Lasgs~-------------Dg~I~IwDl~~~~~i~~l~~--h~-------------------------~~V~~l~fsp 153 (818)
++|+.+.. ...|..+| .+|+.+..+.. |- -.+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~ 280 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDP 280 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEET
T ss_pred CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeC
Confidence 98888772 22466777 77877766531 10 1378899988
Q ss_pred -CCCEEEEEECCCeEEEEECCCCeEEEEEecCC
Q 003459 154 -DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE 185 (818)
Q Consensus 154 -dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~ 185 (818)
++..|+++-.-..|...|.++++....+..+.
T Consensus 281 ~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 281 SDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 55555555445589999988998888776543
No 465
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=87.79 E-value=46 Score=36.33 Aligned_cols=228 Identities=10% Similarity=0.043 Sum_probs=109.8
Q ss_pred CCEEEEEECCCeEEEEECCC--CeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCCeE------------
Q 003459 71 EVLVAAGAASGTIKLWDLEE--AKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGC------------ 135 (818)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t--~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~~~------------ 135 (818)
+++|+.|+.+| |.+.++.. ++..+.+ +...|.++...+..+.|++-+ ....++.+++..-..
T Consensus 13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 36899999999 56666654 3344433 456899999998777666554 334599999842221
Q ss_pred ---EEEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC----eEEEEE---e-cCCCCEEEEEEeCC--CCEEE
Q 003459 136 ---IHTYKGHTRGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAG----KLLHDF---K-CHEGQIQCIDFHPH--EFLLA 201 (818)
Q Consensus 136 ---i~~l~~h~~~V~~l~fspd-g~~L~sgs~Dg~I~IwDl~t~----~~i~~~---~-~h~~~I~sv~fspd--g~~La 201 (818)
....-+|......+.+... ...++++.....|.++..... .....+ . ....++..+..+++ ...++
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 0111234443333333321 123344445566666543321 111111 1 11223333333333 45777
Q ss_pred EEeCCCeEEEEECCC--CeEEEE-----eCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccce-ee
Q 003459 202 TGSADRTVKFWDLET--FELIGS-----AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRL-SD 273 (818)
Q Consensus 202 sgs~Dg~I~IwDl~t--~~~i~~-----~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v-~~ 273 (818)
.|+..+...++++.. ...-.. .........++..-+++.+|++- ++...+.+....+........|... ..
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~-~~~~v~Vn~~G~~~~r~~~l~w~~~p~~ 248 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY-DEFGVFVNLYGKRRSRNPILHWEFMPES 248 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE-CcEEEEEeCCCCccccceEEEcCCcccE
Confidence 777643344555432 110000 11111023334444455555554 4433344443312323333445432 22
Q ss_pred eeecCCCEEEEEEcCCeEEEEEecCCCceee
Q 003459 274 LNVHEGKLLGCSYNQSCVGVWVVDISRIEPY 304 (818)
Q Consensus 274 l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~~ 304 (818)
+.... .+|.+- .+..|.||++.+++...-
T Consensus 249 ~~~~~-pyll~~-~~~~ievr~l~~~~l~q~ 277 (302)
T smart00036 249 FAYHS-PYLLAF-HDNGIEIRSIKTGELLQE 277 (302)
T ss_pred EEEEC-CEEEEE-cCCcEEEEECCCCceEEE
Confidence 33333 444433 466799999999876543
No 466
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=87.65 E-value=30 Score=39.52 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=25.2
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 003459 185 EGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 185 ~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t 216 (818)
...|.++...+..++|++.+.+|.|.+||+..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34588999999889999999999999999974
No 467
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.61 E-value=0.074 Score=59.70 Aligned_cols=145 Identities=10% Similarity=0.203 Sum_probs=99.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEE-EEEECCCcEEEEECCCCeEEEEEe-
Q 003459 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF-ASGSLDTNLKIWDIRKKGCIHTYK- 140 (818)
Q Consensus 63 ~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~L-asgs~Dg~I~IwDl~~~~~i~~l~- 140 (818)
....|.+.+.-++.++.+..+..|| +.++...... ..+....++|.-+++.+ +.+-..+.+++||+.+.... .+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhc
Confidence 3456777777788888899999999 3455444444 44566788898888754 44556789999999754221 111
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003459 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF 211 (818)
Q Consensus 141 ~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~I 211 (818)
+....-.-+.|++.+..++.+...|.+.|++..+.+.+-....|...+++++|.+.+ +.+.++.|..+.+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHH
Confidence 111111227789888889999899999999988876665555588899999998876 4445554554443
No 468
>PLN02193 nitrile-specifier protein
Probab=87.29 E-value=65 Score=37.51 Aligned_cols=143 Identities=12% Similarity=0.129 Sum_probs=71.1
Q ss_pred CCEEEEEECC-------CeEEEEECCCCeEEEEEcCC---CC--Ce-EEEEEeCCCCEEEEEECC-----CcEEEEECCC
Q 003459 71 EVLVAAGAAS-------GTIKLWDLEEAKIVRTLTGH---RS--NC-ISVDFHPFGEFFASGSLD-----TNLKIWDIRK 132 (818)
Q Consensus 71 g~~Lasgs~D-------G~I~IWDl~t~~~v~~l~~h---~~--~V-~sv~fspdg~~Lasgs~D-----g~I~IwDl~~ 132 (818)
+.+++.|+.+ ..+.+||+.+.+-.. +... .. .. .+++. -++..++.|+.+ ..+..||+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~-~~~~lYvfGG~~~~~~~ndv~~yD~~t 253 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVS-IGSTLYVFGGRDASRQYNGFYSFDTTT 253 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEE-ECCEEEEECCCCCCCCCccEEEEECCC
Confidence 4455566643 247788887765332 2110 01 01 11222 235566666654 3688899887
Q ss_pred CeEEEEEec----CCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEec------CCCCEEEEEEeCCC
Q 003459 133 KGCIHTYKG----HTRGVNAIRFTPDGRWVVSGGEDN-----TVKLWDLTAGKLLHDFKC------HEGQIQCIDFHPHE 197 (818)
Q Consensus 133 ~~~i~~l~~----h~~~V~~l~fspdg~~L~sgs~Dg-----~I~IwDl~t~~~i~~~~~------h~~~I~sv~fspdg 197 (818)
.+....-.. ....-.+++. -+++.++.|+.++ .+..||+.+.+-.. ... .... ..+.. -++
T Consensus 254 ~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~-~~~~~-~~g 329 (470)
T PLN02193 254 NEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGG-AGLEV-VQG 329 (470)
T ss_pred CEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCC-cEEEE-ECC
Confidence 654332111 1111122222 2456666776543 46788887654221 110 0111 12222 256
Q ss_pred CEEEEEeCC----CeEEEEECCCCeE
Q 003459 198 FLLATGSAD----RTVKFWDLETFEL 219 (818)
Q Consensus 198 ~~Lasgs~D----g~I~IwDl~t~~~ 219 (818)
++++.|+.+ ..+.+||+.+.+-
T Consensus 330 kiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 330 KVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred cEEEEECCCCCccCceEEEECCCCEE
Confidence 677777755 4689999987654
No 469
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=86.75 E-value=29 Score=38.00 Aligned_cols=106 Identities=14% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCce---EEEecCCCCCe--EEEEEcCCCCEEEEEEC-----CCeEEEEECCCCe
Q 003459 28 SSRVLVTGGED-----HKVNLWAIGKPNA---ILSLSGHTSGI--DSVSFDSSEVLVAAGAA-----SGTIKLWDLEEAK 92 (818)
Q Consensus 28 ~~~lLatgs~D-----g~V~lWdl~~~~~---i~~l~~h~~~V--~~l~fspdg~~Lasgs~-----DG~I~IWDl~t~~ 92 (818)
++.+++.|+.+ ..+..||+.+.+. ...+..-..+. .+++. -++++.+.|+. ...+..||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45677777754 3566677765543 12222111111 12222 24566666664 2468888987654
Q ss_pred EEEE--EcCCCCCeEEEEEeCCCCEEEEEECCC----cEEEEECCCCeE
Q 003459 93 IVRT--LTGHRSNCISVDFHPFGEFFASGSLDT----NLKIWDIRKKGC 135 (818)
Q Consensus 93 ~v~~--l~~h~~~V~sv~fspdg~~Lasgs~Dg----~I~IwDl~~~~~ 135 (818)
-... +... ......+..-+++.++.|+.++ .+.+||+.+.+.
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 3221 2111 1112222233566777777654 356889887654
No 470
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.72 E-value=24 Score=33.66 Aligned_cols=112 Identities=13% Similarity=0.147 Sum_probs=71.2
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCCC--------eEEEEEecCCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECC
Q 003459 107 VDFHPFGEFFASGSLDTNLKIWDIRKK--------GCIHTYKGHTRGVNAIRFTP-----DGRWVVSGGEDNTVKLWDLT 173 (818)
Q Consensus 107 v~fspdg~~Lasgs~Dg~I~IwDl~~~--------~~i~~l~~h~~~V~~l~fsp-----dg~~L~sgs~Dg~I~IwDl~ 173 (818)
-.|.....-|++++.-|.|.|++.... ..+..+. -...|++++-.+ +...|+.| ....|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliG-t~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIG-TQTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEe-ccceEEEEEcc
Confidence 345555567888889999999987633 2344444 456688886544 23456665 46688999998
Q ss_pred CCeEEEEEecCCCCEEEEEEeC----CCCEEEEEeCCCeEEEEECCCCeEEEE
Q 003459 174 AGKLLHDFKCHEGQIQCIDFHP----HEFLLATGSADRTVKFWDLETFELIGS 222 (818)
Q Consensus 174 t~~~i~~~~~h~~~I~sv~fsp----dg~~Lasgs~Dg~I~IwDl~t~~~i~~ 222 (818)
...-+..-. -...++++.+-. ...++++| .+..|.-||.+..+....
T Consensus 82 ~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 82 NNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred cCchhhhhh-CccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEE
Confidence 776554333 346677776643 23455554 467888888776555443
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.53 E-value=67 Score=36.84 Aligned_cols=142 Identities=11% Similarity=0.158 Sum_probs=86.9
Q ss_pred CCCEEEEEECCCeEEEEECCCCe-----EEEEEcCCCCCeEEEEEeCC----C-CEEEEEECCCcEEEEECCC--Ce---
Q 003459 70 SEVLVAAGAASGTIKLWDLEEAK-----IVRTLTGHRSNCISVDFHPF----G-EFFASGSLDTNLKIWDIRK--KG--- 134 (818)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~t~~-----~v~~l~~h~~~V~sv~fspd----g-~~Lasgs~Dg~I~IwDl~~--~~--- 134 (818)
+...|++|+..|.++||+...+. .+... .-..+|..+..-.. . ..||+ -.-..+.+|.+.. +.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc
Confidence 34689999999999999985432 22222 24567877776431 2 24444 3456788887631 11
Q ss_pred ----EEEEEecCC--CCeEEEEEcC----C-CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEE
Q 003459 135 ----CIHTYKGHT--RGVNAIRFTP----D-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG 203 (818)
Q Consensus 135 ----~i~~l~~h~--~~V~~l~fsp----d-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasg 203 (818)
.+..+..|. .....+++-| . ..+|++-+.||.+.+|+-+.-.....+.. .--...+.|.+.-..++++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 122222232 2334444443 2 36788899999999999765433333332 2222456788888889999
Q ss_pred eCCCeEEEEEC
Q 003459 204 SADRTVKFWDL 214 (818)
Q Consensus 204 s~Dg~I~IwDl 214 (818)
+.+..|..|..
T Consensus 193 sss~~l~~Yky 203 (418)
T PF14727_consen 193 SSSWTLECYKY 203 (418)
T ss_pred cCceeEEEecH
Confidence 88888888875
No 472
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.46 E-value=21 Score=43.10 Aligned_cols=91 Identities=14% Similarity=0.338 Sum_probs=55.1
Q ss_pred EEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEe---cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 003459 147 NAIRFTPDGRWVVSGGEDN-----TVKLWDLTAGKLLHDFK---CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~Dg-----~I~IwDl~t~~~i~~~~---~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~ 218 (818)
..+.|-|+|..+++-+.|| .|.++.- +|-.-..+. +....+..++|+-....++.+. .+.|++|-..+..
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-~n~~~lwttkNyh 327 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-GNLLKLWTTKNYH 327 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHhh-cceEEEEEccceE
Confidence 3478999999999887665 2455542 221111111 1233456677776655555543 5689999888765
Q ss_pred EEEEeCCCCCCeeEEEEeCCC
Q 003459 219 LIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 219 ~i~~~~~~~~~I~sl~fspdg 239 (818)
---...-.-..+.-+.|+|..
T Consensus 328 WYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 328 WYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEEeecCCCcceeeecccc
Confidence 443333334557788999964
No 473
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=86.40 E-value=5.9 Score=45.15 Aligned_cols=84 Identities=17% Similarity=0.266 Sum_probs=59.2
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC-EEEEEEeCC-----------------C-CEEE
Q 003459 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPH-----------------E-FLLA 201 (818)
Q Consensus 141 ~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~-I~sv~fspd-----------------g-~~La 201 (818)
.....+.+++.+|++++.++...-|+|.++|+..+..+..+++.... +.=+..... . .+++
T Consensus 305 D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 305 DSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred cCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 34456889999999999888888899999999999888888764432 111111100 1 1334
Q ss_pred EEeCCCeEEEEECCCCeEEEEeC
Q 003459 202 TGSADRTVKFWDLETFELIGSAG 224 (818)
Q Consensus 202 sgs~Dg~I~IwDl~t~~~i~~~~ 224 (818)
-+-.-|.|.||.+++|..+..+.
T Consensus 385 yaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EeccCCeEEEEecCCCCEEEEEE
Confidence 45568899999999988877654
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.04 E-value=9.5 Score=48.34 Aligned_cols=138 Identities=17% Similarity=0.239 Sum_probs=88.4
Q ss_pred ECCCeEEEEECCCCeEEEEEcCCCCCeEEEEE--------eCCCCEEEEEECCCcEEEEECCCC----eE-----EEEEe
Q 003459 78 AASGTIKLWDLEEAKIVRTLTGHRSNCISVDF--------HPFGEFFASGSLDTNLKIWDIRKK----GC-----IHTYK 140 (818)
Q Consensus 78 s~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~f--------spdg~~Lasgs~Dg~I~IwDl~~~----~~-----i~~l~ 140 (818)
+.|+.+.+|+.+++.....+.+....|..+.. .|.=+++++...--.|.++-+.-. .. ..++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 45889999999998877777776666666653 233345555555566777644311 10 12222
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEE--EECCCC---e-E----------------EEEEe-cCCCCEEEEEEeCCC
Q 003459 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKL--WDLTAG---K-L----------------LHDFK-CHEGQIQCIDFHPHE 197 (818)
Q Consensus 141 ~h~~~V~~l~fspdg~~L~sgs~Dg~I~I--wDl~t~---~-~----------------i~~~~-~h~~~I~sv~fspdg 197 (818)
.....|.|+....+|+.+++| .||.|+- |....| + + +..+. .+..+|..+......
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 335568899988888876665 5664332 222211 0 0 11222 356789999998888
Q ss_pred CEEEEEeCCCeEEEEECCC
Q 003459 198 FLLATGSADRTVKFWDLET 216 (818)
Q Consensus 198 ~~Lasgs~Dg~I~IwDl~t 216 (818)
..+.+-+..|+|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999975
No 475
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.81 E-value=5.4 Score=48.15 Aligned_cols=112 Identities=14% Similarity=0.203 Sum_probs=76.3
Q ss_pred EEEEEEee-CCCcEEEEEeCCCeEEEEECCC-------C-------------ceEEEecCCCCCeEEEEEc--CCCCEEE
Q 003459 19 VNCLKIGR-KSSRVLVTGGEDHKVNLWAIGK-------P-------------NAILSLSGHTSGIDSVSFD--SSEVLVA 75 (818)
Q Consensus 19 V~~lafsp-~~~~lLatgs~Dg~V~lWdl~~-------~-------------~~i~~l~~h~~~V~~l~fs--pdg~~La 75 (818)
|+.+.... .+..+|+.|.+||.|.+|.+++ . ++...+. ....+++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 55554432 2566899999999999996521 1 1122222 34578999998 8888999
Q ss_pred EEECCCeEEEEECCCC--eE-EEEEcCCCCCeEEEEEeCCC---C---EEEEEECCCcEEEEECC
Q 003459 76 AGAASGTIKLWDLEEA--KI-VRTLTGHRSNCISVDFHPFG---E---FFASGSLDTNLKIWDIR 131 (818)
Q Consensus 76 sgs~DG~I~IWDl~t~--~~-v~~l~~h~~~V~sv~fspdg---~---~Lasgs~Dg~I~IwDl~ 131 (818)
+++....|.||-+... +. ...-..|...|.+|+|.++. . .+++++-.|.+.+|++.
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 9999998988865432 11 11111266789999997754 2 78889999999999873
No 476
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.53 E-value=56 Score=35.03 Aligned_cols=242 Identities=14% Similarity=0.113 Sum_probs=139.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 003459 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l 139 (818)
..-..++-.+||..-+++...|.|--.|..+|+....--+....-..|...|||..-++-+.. .|.-.|-++.+. .+|
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEe
Confidence 345667788899888888888888888999998877666666666778888888766554433 455556544432 222
Q ss_pred ----ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 003459 140 ----KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 140 ----~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
+.-........|.+.|++-+++.. |.---.|-. ...+..|.. ....-+.|+..|+|...++.-.+..|-..|.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence 222355778889999988777753 221112221 123333432 2234578889999998888888888888888
Q ss_pred CCCeEEEEe--CCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCce-ecccccccc--ceeeeeec-CCCEEEEEEcC
Q 003459 215 ETFELIGSA--GPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRC-HDAVDVGWS--RLSDLNVH-EGKLLGCSYNQ 288 (818)
Q Consensus 215 ~t~~~i~~~--~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~-~~~~~~~~~--~v~~l~~~-~g~lLatg~~D 288 (818)
.++.....- .......+.+--+|.|+.-++.. +.-.++-+++... ...+..... .-.++.+. .+++-.+-..-
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~wittw-g~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~a 296 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTW-GTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADA 296 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEecc-CCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecccc
Confidence 776322221 22233456666677787766642 2223443433221 222222211 11223332 23333344445
Q ss_pred CeEEEEEecCCCceeeee
Q 003459 289 SCVGVWVVDISRIEPYTI 306 (818)
Q Consensus 289 g~V~IWdvd~~~~~~~~~ 306 (818)
|.|.-+|-.+.++..|..
T Consensus 297 gai~rfdpeta~ftv~p~ 314 (353)
T COG4257 297 GAIGRFDPETARFTVLPI 314 (353)
T ss_pred CceeecCcccceEEEecC
Confidence 556666655555555443
No 477
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=85.47 E-value=0.11 Score=58.36 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=99.9
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~t~~~v~~ 96 (818)
.-....|-+.+.+ ++.++.+-.+..||- .++....+. .++....++|+.++..+ +.+-..+.+.+||+.+......
T Consensus 36 ~pi~~~w~~e~~n-lavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqL 112 (615)
T KOG2247|consen 36 GPIIHRWRPEGHN-LAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQL 112 (615)
T ss_pred ccceeeEecCCCc-eehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHH
Confidence 3344567786666 666667778888884 344444433 35566788898877644 4455678999999876432211
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~I 169 (818)
-.+....-.-+.|++.+..++.+...|.+.||+-.+.+.+.....|...+.+++|.+.+. .+.++.|..+.+
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v 184 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSV 184 (615)
T ss_pred hccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHH
Confidence 111222222378999889999999999999999887776666655889999999998764 555555655444
No 478
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.08 E-value=6.1 Score=41.09 Aligned_cols=64 Identities=8% Similarity=0.141 Sum_probs=49.0
Q ss_pred EeCCCCEEEEEeCCCeEEEEECCCCeEEEEe-------C-------CCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 193 FHPHEFLLATGSADRTVKFWDLETFELIGSA-------G-------PETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 193 fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~-------~-------~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
+..++.+|++-+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+++....|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 4457888999999999999999998765442 1 24566888889989988887777766666654
No 479
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=84.90 E-value=3.1 Score=31.43 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=27.6
Q ss_pred CCEEEEEEeeCCC--cEEEEEeCCCeEEEEECCC
Q 003459 17 STVNCLKIGRKSS--RVLVTGGEDHKVNLWAIGK 48 (818)
Q Consensus 17 ~~V~~lafsp~~~--~lLatgs~Dg~V~lWdl~~ 48 (818)
+.|.+++|+|..+ .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998666 7899998899999999874
No 480
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=84.83 E-value=88 Score=36.71 Aligned_cols=230 Identities=9% Similarity=0.069 Sum_probs=119.1
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCe---EEEEEcCCCCCeEEEEEeCCC-CEEEEEEC--CCcEEEEECCCCeEEEEEec
Q 003459 68 DSSEVLVAAGAASGTIKLWDLEEAK---IVRTLTGHRSNCISVDFHPFG-EFFASGSL--DTNLKIWDIRKKGCIHTYKG 141 (818)
Q Consensus 68 spdg~~Lasgs~DG~I~IWDl~t~~---~v~~l~~h~~~V~sv~fspdg-~~Lasgs~--Dg~I~IwDl~~~~~i~~l~~ 141 (818)
..++..++.+..+|.+....+.... .+..+..-.....++++..+| .+|+.|+. |+.+..|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 3466788889999999988876543 122222114456677777655 37777776 4456666654555666665
Q ss_pred CCCCeEEEEEcCC----CC------EEEEEE---CCCeEEEEECCCCeEEE--E--EecCCC--CEEEEEEeC-CCCEEE
Q 003459 142 HTRGVNAIRFTPD----GR------WVVSGG---EDNTVKLWDLTAGKLLH--D--FKCHEG--QIQCIDFHP-HEFLLA 201 (818)
Q Consensus 142 h~~~V~~l~fspd----g~------~L~sgs---~Dg~I~IwDl~t~~~i~--~--~~~h~~--~I~sv~fsp-dg~~La 201 (818)
.-++|..+++.+. .. .|++++ .+|.++++. .|-.+. . .....+ .++.+.... ++.+|+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 3568998888531 11 555554 467788874 332222 1 111222 233333222 145777
Q ss_pred EEeCCCeEEEEECC---CCeEEEEeC--CC---CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccceee
Q 003459 202 TGSADRTVKFWDLE---TFELIGSAG--PE---TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSD 273 (818)
Q Consensus 202 sgs~Dg~I~IwDl~---t~~~i~~~~--~~---~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~ 273 (818)
.+..+. -+++.+. ..+.+.... +. ...+.+-.+. +..++=-...++++.+....+....+.......-.
T Consensus 376 ~S~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~ 452 (504)
T PF10433_consen 376 LSFPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIV 452 (504)
T ss_dssp EEESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---S
T ss_pred EEcCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEE
Confidence 776554 4455553 334332221 11 1122222222 44555455677888887666555444332222222
Q ss_pred eeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 274 LNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 274 l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
.+..++..++.+..++.+..+.++......
T Consensus 453 ~a~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 482 (504)
T PF10433_consen 453 AASINDPQVLVALSGGELVYFELDDNKISV 482 (504)
T ss_dssp EEEESSSEEEEEE-TTEEEEEEEETTEEEE
T ss_pred EEEECCCEEEEEEeCCcEEEEEEECCceee
Confidence 333455677777778889999998888754
No 481
>PRK05560 DNA gyrase subunit A; Validated
Probab=84.39 E-value=1.2e+02 Score=37.95 Aligned_cols=206 Identities=13% Similarity=0.064 Sum_probs=106.7
Q ss_pred CcEEEEEeCCCeEEEEEC---C------CCceE---EEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCC----
Q 003459 29 SRVLVTGGEDHKVNLWAI---G------KPNAI---LSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLWDLEE---- 90 (818)
Q Consensus 29 ~~lLatgs~Dg~V~lWdl---~------~~~~i---~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IWDl~t---- 90 (818)
...|+..+..|.+..... . .|..+ ..+.....-|.++.+.. ++.+++..+.+|.++--++..
T Consensus 548 ~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~ 627 (805)
T PRK05560 548 HDTLLFFTNRGRVYRLKVYEIPEASRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNI 627 (805)
T ss_pred CCeEEEEecCCeEEEEEhhhCcCCCcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhc
Confidence 334555556677766643 2 12222 12232233455555552 567888899999998776543
Q ss_pred ---CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC---------CeEEEEEecCCCCeEEE-EEcCCCCE
Q 003459 91 ---AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---------KGCIHTYKGHTRGVNAI-RFTPDGRW 157 (818)
Q Consensus 91 ---~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~---------~~~i~~l~~h~~~V~~l-~fspdg~~ 157 (818)
|.....+... +.+..+........++..+..|.+..+.+.. |.....+.. ...|..+ .+.+++.+
T Consensus 628 ~r~G~~~ikLke~-D~lv~v~~~~~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~ 705 (805)
T PRK05560 628 RSNGIIAINLDEG-DELIGVRLTDGDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQE 705 (805)
T ss_pred ccCCceeeccCCC-CEEEEEEEeCCCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcE
Confidence 2223334433 3444444444556777778888777776532 112222322 2334433 34444447
Q ss_pred EEEEECCCeEEEEECCC-------Ce--EEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC
Q 003459 158 VVSGGEDNTVKLWDLTA-------GK--LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t-------~~--~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~ 228 (818)
++..+..|.++...+.. ++ ....+....+.+..+........++..+.+|.+..++...- ........
T Consensus 706 il~vTk~G~iKr~~l~e~~~~~R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~eI---~~~gR~a~ 782 (805)
T PRK05560 706 ILTVTENGYGKRTPVSEYRLQGRGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSEI---SITGRNTQ 782 (805)
T ss_pred EEEEEeCCeEEEEEHHHhhccCCCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHHC---CccccCCC
Confidence 88888889888776431 11 22222222234433333333344556666777777776532 22222344
Q ss_pred CeeEEEEeCCC
Q 003459 229 GVRCLTFNPDG 239 (818)
Q Consensus 229 ~I~sl~fspdg 239 (818)
++..+.+..++
T Consensus 783 GVk~I~L~~~D 793 (805)
T PRK05560 783 GVRLIRLDEGD 793 (805)
T ss_pred CeeeEecCCCC
Confidence 56677665444
No 482
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.32 E-value=79 Score=35.73 Aligned_cols=190 Identities=12% Similarity=0.222 Sum_probs=111.0
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEc----CCCCE--EEEEE-CC---CeEEEEECC--CCeEEEE
Q 003459 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD----SSEVL--VAAGA-AS---GTIKLWDLE--EAKIVRT 96 (818)
Q Consensus 29 ~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fs----pdg~~--Lasgs-~D---G~I~IWDl~--t~~~v~~ 96 (818)
..+++....++-+.+||+. |+.+..+. .+.++.+..- -.++. |+.++ .+ ..|++|.+. ++. +..
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~ 143 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTD 143 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceE
Confidence 4467777788899999984 66677664 2344444331 13332 33443 32 469999775 343 333
Q ss_pred EcC-------CCCCeEEEEEe--C-CCC-EEEEEECCCcEEEEECC---CC----eEEEEEecCCCCeEEEEEcCCCCEE
Q 003459 97 LTG-------HRSNCISVDFH--P-FGE-FFASGSLDTNLKIWDIR---KK----GCIHTYKGHTRGVNAIRFTPDGRWV 158 (818)
Q Consensus 97 l~~-------h~~~V~sv~fs--p-dg~-~Lasgs~Dg~I~IwDl~---~~----~~i~~l~~h~~~V~~l~fspdg~~L 158 (818)
+.. ....++.+|+- + +|. ++++...+|.+..|.+. .+ +.++.|.. ...+..|.......+|
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRL 222 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCE
Confidence 321 12346677763 3 354 66777889988888664 33 35677764 4578999999888899
Q ss_pred EEEECCCeEEEEECCC-----CeEEEEEec--CCCCEEEEEEeC--C--CCEEEEEeCCCeEEEEECCC-CeEEEEe
Q 003459 159 VSGGEDNTVKLWDLTA-----GKLLHDFKC--HEGQIQCIDFHP--H--EFLLATGSADRTVKFWDLET-FELIGSA 223 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t-----~~~i~~~~~--h~~~I~sv~fsp--d--g~~Lasgs~Dg~I~IwDl~t-~~~i~~~ 223 (818)
+.+-++--|.-|+... +..+....+ ....|-.|++-. + |.+|++.-.+++..+||.+. ...+..+
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 9999998888888863 233333322 235677777753 3 34555555678999999875 3334333
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.31 E-value=11 Score=47.82 Aligned_cols=138 Identities=15% Similarity=0.204 Sum_probs=89.1
Q ss_pred eCCCeEEEEECCCCceEEEecCCCCCeEEEEEc--------CCCCEEEEEECCCeEEEEECCCCe----E-----EEEEc
Q 003459 36 GEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD--------SSEVLVAAGAASGTIKLWDLEEAK----I-----VRTLT 98 (818)
Q Consensus 36 s~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fs--------pdg~~Lasgs~DG~I~IWDl~t~~----~-----v~~l~ 98 (818)
+.|..+.+|+++++.....+.+....|..+..- |.=+++++-+.--.|.++-+.-.+ . ..++.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 457889999999988888888877777777652 222344444444556666442111 0 02223
Q ss_pred CCCCCeEEEEEeCCCCEEEEEECCCcEEEE--ECCCC---e-E----------------EEEEe-cCCCCeEEEEEcCCC
Q 003459 99 GHRSNCISVDFHPFGEFFASGSLDTNLKIW--DIRKK---G-C----------------IHTYK-GHTRGVNAIRFTPDG 155 (818)
Q Consensus 99 ~h~~~V~sv~fspdg~~Lasgs~Dg~I~Iw--Dl~~~---~-~----------------i~~l~-~h~~~V~~l~fspdg 155 (818)
.....|.|+....+|+.|++| .||.|+-. ....+ + | +..+. .+..+|..+.....-
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 345678899988888777766 56644422 11111 0 1 11122 467789999998888
Q ss_pred CEEEEEECCCeEEEEECCC
Q 003459 156 RWVVSGGEDNTVKLWDLTA 174 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t 174 (818)
..+++-+..|.|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8899999999999999976
No 484
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.04 E-value=46 Score=34.37 Aligned_cols=137 Identities=11% Similarity=0.143 Sum_probs=80.6
Q ss_pred CEEEEEECCCcEEEEECC--CCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC---C---eEEEE---ECC--CCeEEE-
Q 003459 114 EFFASGSLDTNLKIWDIR--KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED---N---TVKLW---DLT--AGKLLH- 179 (818)
Q Consensus 114 ~~Lasgs~Dg~I~IwDl~--~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D---g---~I~Iw---Dl~--t~~~i~- 179 (818)
+.|+.+...+.|.+|++. ..+...+|.. -+.|..+.++..|++|++--.+ . .+++| ... ....+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 555555667889999998 3345566654 3779999999999999986433 2 45554 222 111111
Q ss_pred EEec---------------------CCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeE-EE-----Ee-----CCC
Q 003459 180 DFKC---------------------HEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFEL-IG-----SA-----GPE 226 (818)
Q Consensus 180 ~~~~---------------------h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~-i~-----~~-----~~~ 226 (818)
.+-+ -...+.+++..|- |++++ |+ ++.+.+|.+..... .. .+ ..+
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 1111 1235677888885 55554 44 56888987754332 11 11 111
Q ss_pred -CCCeeEEEEeCCCCEEEEEECCCEEEEEe
Q 003459 227 -TSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (818)
Q Consensus 227 -~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (818)
.-.+..++|. +.|+|+.++..++|+.+
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl 213 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMSDLEVLVLKL 213 (215)
T ss_pred cCceEEEEEEE--eeEEEEecCCEEEEEEE
Confidence 1124555565 56888888877777765
No 485
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.03 E-value=16 Score=46.56 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.8
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeE
Q 003459 194 HPHEFLLATGSADRTVKFWDLETFEL 219 (818)
Q Consensus 194 spdg~~Lasgs~Dg~I~IwDl~t~~~ 219 (818)
..++..++++..||.+.+||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999998765
No 486
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.31 E-value=1.4e+02 Score=37.16 Aligned_cols=156 Identities=13% Similarity=0.087 Sum_probs=91.6
Q ss_pred CCCCeEEEEEe---C----CCCEEEEEECCCcEEEEECCCC---------------eEEEEEec---CCCCeEEEEEcC-
Q 003459 100 HRSNCISVDFH---P----FGEFFASGSLDTNLKIWDIRKK---------------GCIHTYKG---HTRGVNAIRFTP- 153 (818)
Q Consensus 100 h~~~V~sv~fs---p----dg~~Lasgs~Dg~I~IwDl~~~---------------~~i~~l~~---h~~~V~~l~fsp- 153 (818)
...+|..|+|. . ...+|++- ....+.|+...-. .++..+.. ...+...++|+|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 55677777776 2 12345544 4456777762111 22333331 234577899998
Q ss_pred CCCEEEEEECCCeEEEEECCCCe-----EEEEEecCC----------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 003459 154 DGRWVVSGGEDNTVKLWDLTAGK-----LLHDFKCHE----------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (818)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~-----~i~~~~~h~----------~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~ 218 (818)
+...||+....|...|||+..+. .+.....+. .....+.|.++...|+.++ ...+.++|+++..
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~ 235 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSKLMLIDFESNW 235 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCceEEEECCCCC
Confidence 55689999999999999992111 111111111 2234788988877777765 4578999998876
Q ss_pred EEE--EeCCCCCCeeEEEEeCC-CCEEEEEECCCEEEEEecC
Q 003459 219 LIG--SAGPETSGVRCLTFNPD-GRTLLCGLHESLKVFSWEP 257 (818)
Q Consensus 219 ~i~--~~~~~~~~I~sl~fspd-g~~Lasgs~d~I~Vwd~~~ 257 (818)
... ........|.++.-+++ -.+++.-+...|..++...
T Consensus 236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred ccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 533 12334567888888876 2233333445555555554
No 487
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.01 E-value=21 Score=40.45 Aligned_cols=136 Identities=14% Similarity=0.171 Sum_probs=85.8
Q ss_pred CCeEEEEECCCC--c-eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----EcCCCCCeEEEEEe
Q 003459 38 DHKVNLWAIGKP--N-AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT----LTGHRSNCISVDFH 110 (818)
Q Consensus 38 Dg~V~lWdl~~~--~-~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~----l~~h~~~V~sv~fs 110 (818)
.|.+.=|-+... . .+..-....++|.++.|++|.+.||+--.+.+|.+++....+.... .+.....|...+|.
T Consensus 42 SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~ 121 (657)
T KOG2377|consen 42 SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWT 121 (657)
T ss_pred cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEe
Confidence 344666655322 2 2222223567999999999999999999999999999854333222 22234468899998
Q ss_pred CCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCC
Q 003459 111 PFGEFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGVNAIRFTPDGRWVVSGG--EDNTVKLWDLTAG 175 (818)
Q Consensus 111 pdg~~Lasgs~Dg~I~IwDl~~-~~~i~~l~~h~~~V~~l~fspdg~~L~sgs--~Dg~I~IwDl~t~ 175 (818)
.. .-+|.-+..| +-+|.+.. .+.++..+.|...|....|.++.+.++.++ ..+.+.=+-++++
T Consensus 122 ~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 122 SS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred cC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 65 5566665545 66665442 334555667888899999999877655443 2333433444443
No 488
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=81.34 E-value=1.3e+02 Score=36.29 Aligned_cols=161 Identities=12% Similarity=0.186 Sum_probs=88.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE--EEcC-CCCCeEEEEEeCC------CCEEEEEEC-C---CcE
Q 003459 59 TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR--TLTG-HRSNCISVDFHPF------GEFFASGSL-D---TNL 125 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~--~l~~-h~~~V~sv~fspd------g~~Lasgs~-D---g~I 125 (818)
.+.|.++.|..+++.+++...+|.|.+||...+.... .+.. +...+.-=+|.++ ..++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 5789999999999999999999999999994332211 2221 2221111122221 234444443 3 256
Q ss_pred EEEEC--CCCeEEEEEe---cCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecC----C--CCEEEEEE
Q 003459 126 KIWDI--RKKGCIHTYK---GHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH----E--GQIQCIDF 193 (818)
Q Consensus 126 ~IwDl--~~~~~i~~l~---~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h----~--~~I~sv~f 193 (818)
+++.+ .... +..+. .+........|.- +|.. +-- .++.|.+|++..-+..+++.-. . ..+.++.-
T Consensus 209 kL~~l~~~~~~-~~El~s~~~e~~~~~~s~f~Y~~G~L-Y~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 209 KLISLSNESSS-IFELSSTILENFGLEDSKFCYQFGKL-YQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEeccCCcc-eEEeehheeccCCcccceEEEeCCEE-EEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 67777 2222 22222 1222222233332 4543 332 6889999999887766665421 1 23344432
Q ss_pred eCCCCEEEEEeCCCeEEEEECCCCeEEEEeC
Q 003459 194 HPHEFLLATGSADRTVKFWDLETFELIGSAG 224 (818)
Q Consensus 194 spdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~ 224 (818)
|..+.++.+ .++.|++.|+.-...+..+.
T Consensus 286 -~s~nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 -PSPNRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred -CCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 333344333 36789999998666665554
No 489
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=81.26 E-value=31 Score=35.60 Aligned_cols=102 Identities=18% Similarity=0.249 Sum_probs=67.3
Q ss_pred CEEEEEECCCeEEEEECC--CCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCC------eEEEE-ECCC----CeEEE-
Q 003459 156 RWVVSGGEDNTVKLWDLT--AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR------TVKFW-DLET----FELIG- 221 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~--t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg------~I~Iw-Dl~t----~~~i~- 221 (818)
..|+.+...+.|.+|++. ..+.+..|.. -+.|..+.++..|++|++--.+. .+++| +++. .+++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455555677889999988 3456677764 48899999999999999964322 56665 2211 11111
Q ss_pred EeC---------------------CCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCC
Q 003459 222 SAG---------------------PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI 258 (818)
Q Consensus 222 ~~~---------------------~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~ 258 (818)
.+- +....+.+++..|-.--|++|+++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEE
Confidence 111 1244577888888655677788899999987543
No 490
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.82 E-value=12 Score=38.91 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=49.4
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEE-------c-------CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC
Q 003459 67 FDSSEVLVAAGAASGTIKLWDLEEAKIVRTL-------T-------GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK 132 (818)
Q Consensus 67 fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l-------~-------~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~ 132 (818)
+..++.+|++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-+++-+ +|..+.||..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3457888999999999999999998765432 1 2445677888887777666554 57788888665
Q ss_pred CeEE
Q 003459 133 KGCI 136 (818)
Q Consensus 133 ~~~i 136 (818)
+..+
T Consensus 97 ~~W~ 100 (219)
T PF07569_consen 97 GCWI 100 (219)
T ss_pred ceeE
Confidence 4433
No 491
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.66 E-value=24 Score=38.19 Aligned_cols=113 Identities=15% Similarity=0.260 Sum_probs=70.5
Q ss_pred CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE------CCCeEEEEECCCCeEEEEEec-----CCCCEEEE
Q 003459 123 TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG------EDNTVKLWDLTAGKLLHDFKC-----HEGQIQCI 191 (818)
Q Consensus 123 g~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs------~Dg~I~IwDl~t~~~i~~~~~-----h~~~I~sv 191 (818)
..|++||..+.+...--.+-.+.|..+.|..+.+.++.|. ....+..||+.+.. ...+.. -.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence 4699999988776665555668899999986666666554 34568899988654 323332 23678888
Q ss_pred EEeC-CC-CEEEEEe-C--CCeEEEEECCCCeEEEE-eCCCCCCeeEEEEe
Q 003459 192 DFHP-HE-FLLATGS-A--DRTVKFWDLETFELIGS-AGPETSGVRCLTFN 236 (818)
Q Consensus 192 ~fsp-dg-~~Lasgs-~--Dg~I~IwDl~t~~~i~~-~~~~~~~I~sl~fs 236 (818)
.+.. ++ .+.+.|. . +..|..||-.++..+.. .......|+.+.+-
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~ 145 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVL 145 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEE
Confidence 7754 33 3444443 2 33677888777766655 22233445555443
No 492
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=80.53 E-value=6.1 Score=29.90 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCC---CEEEEEECCCeEEEEECCCC
Q 003459 144 RGVNAIRFTPDG---RWVVSGGEDNTVKLWDLTAG 175 (818)
Q Consensus 144 ~~V~~l~fspdg---~~L~sgs~Dg~I~IwDl~t~ 175 (818)
+.|.++.|+|.. .+|+.+-.-|.|.++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 368999999843 58888888899999999953
No 493
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.88 E-value=31 Score=39.87 Aligned_cols=99 Identities=12% Similarity=0.097 Sum_probs=59.3
Q ss_pred CeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 003459 103 NCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182 (818)
Q Consensus 103 ~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~ 182 (818)
.|..+..++.|..++..+.+|.+.++=.+....-..++.....|+|-.|.-+. .|++. .
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~fts--------------------s 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTS--------------------S 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeecc--------------------C
Confidence 46677788889998888888866555434333333444333334443333221 12211 1
Q ss_pred cCCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 183 CHEGQIQCIDFHPHE---FLLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 183 ~h~~~I~sv~fspdg---~~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
..-.+..++|||+. ..|..-+.|.+|++||+.....+...
T Consensus 164 -~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 164 -TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred -CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 12235667899874 56777778999999999876666443
No 494
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.84 E-value=1.2e+02 Score=34.26 Aligned_cols=184 Identities=22% Similarity=0.315 Sum_probs=109.9
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEE----eCCCCE--EEEEE-CC---CcEEEEECC--CCeEE
Q 003459 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDF----HPFGEF--FASGS-LD---TNLKIWDIR--KKGCI 136 (818)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~f----spdg~~--Lasgs-~D---g~I~IwDl~--~~~~i 136 (818)
|...+|+....++-+.+||+. |+.+..+.. +....+.. .-.|+. |++++ .+ ..|++|.+. ++. +
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-L 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-E
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-c
Confidence 456688888889999999986 666666642 23333332 123442 44444 32 468999765 333 3
Q ss_pred EEEec-------CCCCeEEEEEc--C-CCC-EEEEEECCCeEEEEECC---CC----eEEEEEecCCCCEEEEEEeCCCC
Q 003459 137 HTYKG-------HTRGVNAIRFT--P-DGR-WVVSGGEDNTVKLWDLT---AG----KLLHDFKCHEGQIQCIDFHPHEF 198 (818)
Q Consensus 137 ~~l~~-------h~~~V~~l~fs--p-dg~-~L~sgs~Dg~I~IwDl~---t~----~~i~~~~~h~~~I~sv~fspdg~ 198 (818)
..+.. ....++.+|+- + +|. ++++...+|.+..|-+. .+ +.+++|.. .+.+-.|.......
T Consensus 142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETG 220 (381)
T ss_dssp EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTT
T ss_pred eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccC
Confidence 33321 12346677763 3 454 56667788988777664 33 46777774 45788999988888
Q ss_pred EEEEEeCCCeEEEEECCC-----CeEEEEeCC--CCCCeeEEEEeC--CC-CEEEEEECC--CEEEEEecC
Q 003459 199 LLATGSADRTVKFWDLET-----FELIGSAGP--ETSGVRCLTFNP--DG-RTLLCGLHE--SLKVFSWEP 257 (818)
Q Consensus 199 ~Lasgs~Dg~I~IwDl~t-----~~~i~~~~~--~~~~I~sl~fsp--dg-~~Lasgs~d--~I~Vwd~~~ 257 (818)
.|+.+-++.-|+-|+.+. ++.+....+ ....|-.|++-. +| .||++++.+ ...||+-+.
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 999999999899998862 334433332 345677887753 43 377776554 588998764
No 495
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=78.27 E-value=21 Score=37.81 Aligned_cols=141 Identities=16% Similarity=0.266 Sum_probs=83.3
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC-C--CcEEEEECCC----CeEEE---EEecCCCCeEEEEE
Q 003459 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL-D--TNLKIWDIRK----KGCIH---TYKGHTRGVNAIRF 151 (818)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~-D--g~I~IwDl~~----~~~i~---~l~~h~~~V~~l~f 151 (818)
.-.+||+.+++....-.....-|.+-.|.++|+.|.+|+. + ..+++++... ..... .+. ....--....
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~ 125 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATT 125 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCccccceE
Confidence 3468999988764433334455666778899999998875 2 3577887543 11111 111 1222334455
Q ss_pred cCCCCEEEEEECCCe-EEEEECCC-Ce-EEE-EEec------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 003459 152 TPDGRWVVSGGEDNT-VKLWDLTA-GK-LLH-DFKC------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG 221 (818)
Q Consensus 152 spdg~~L~sgs~Dg~-I~IwDl~t-~~-~i~-~~~~------h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~ 221 (818)
.+||+.|+.|+.... ..+|.-.. .. ... .+-. ...--.-+...|+|++++.+..+ -.|||..+.+.+.
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~ 203 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVR 203 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEe
Confidence 679999999988753 44555422 11 111 1110 11122356667999999998765 4677988887766
Q ss_pred EeCC
Q 003459 222 SAGP 225 (818)
Q Consensus 222 ~~~~ 225 (818)
.+..
T Consensus 204 ~lP~ 207 (243)
T PF07250_consen 204 TLPD 207 (243)
T ss_pred eCCC
Confidence 6544
No 496
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=77.86 E-value=27 Score=38.62 Aligned_cols=102 Identities=24% Similarity=0.349 Sum_probs=56.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE---EEEEe----cCCCCEEEEEEeCC----CCEEEEEeCC-------
Q 003459 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL---LHDFK----CHEGQIQCIDFHPH----EFLLATGSAD------- 206 (818)
Q Consensus 145 ~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~---i~~~~----~h~~~I~sv~fspd----g~~Lasgs~D------- 206 (818)
..+.|+|.|||+.|++ ...|.|++++ ..+.. +..+. ........++++|+ +.+.+..+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999987665 6699999999 44543 22221 23456899999994 4444444421
Q ss_pred -CeEEEEECCCC-------eEEE-EeC---CCCCCeeEEEEeCCCCEEEEEECC
Q 003459 207 -RTVKFWDLETF-------ELIG-SAG---PETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 207 -g~I~IwDl~t~-------~~i~-~~~---~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
..|.-|..... +.+. ... .....-..|.|.|||.+.++.++.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 23444444332 1121 111 123445779999999655544433
No 497
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=76.95 E-value=1.2e+02 Score=33.16 Aligned_cols=202 Identities=12% Similarity=0.140 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECC-------CCeEEEEEcC-----CCCCeEEEEEeCCCC------------EEE
Q 003459 62 IDSVSFDSSEVLVAAGAASGTIKLWDLE-------EAKIVRTLTG-----HRSNCISVDFHPFGE------------FFA 117 (818)
Q Consensus 62 V~~l~fspdg~~Lasgs~DG~I~IWDl~-------t~~~v~~l~~-----h~~~V~sv~fspdg~------------~La 117 (818)
-+.|+|+|.+.+.++....+...+||.. ....+.++.. .....+.+.|+.... .|+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 5789999999888888888999999986 1223344432 123567777764322 367
Q ss_pred EEECCCcEEEEECCCCeE-----EEEEec-CCCCe-EEEEEcC--CCCEEEEEE-CCCeEEEEECCCCeEEE--EEecC-
Q 003459 118 SGSLDTNLKIWDIRKKGC-----IHTYKG-HTRGV-NAIRFTP--DGRWVVSGG-EDNTVKLWDLTAGKLLH--DFKCH- 184 (818)
Q Consensus 118 sgs~Dg~I~IwDl~~~~~-----i~~l~~-h~~~V-~~l~fsp--dg~~L~sgs-~Dg~I~IwDl~t~~~i~--~~~~h- 184 (818)
.++.||+|.-|...-... ...+.. ....| ..+++.. .+.+|+.+. ..++|.+||-.-.+... .|...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 888999999998532221 122221 12223 3455443 356666554 46788888855332211 11100
Q ss_pred ----CCC--EEEE------EE---eCCCCEEEEEeCCCeEEEEECCCCeEEEEeC--CCCCCeeEEEEeC------CCCE
Q 003459 185 ----EGQ--IQCI------DF---HPHEFLLATGSADRTVKFWDLETFELIGSAG--PETSGVRCLTFNP------DGRT 241 (818)
Q Consensus 185 ----~~~--I~sv------~f---spdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~--~~~~~I~sl~fsp------dg~~ 241 (818)
-.+ |..+ .| .+++..=+.|-.-|.|-+||+. ++.+.++. +.-...+.|+..| .|.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 000 1110 11 1111122223345789999976 66666653 2233457777755 3556
Q ss_pred EEEEE-CCCEEEEEecCCceeccc
Q 003459 242 LLCGL-HESLKVFSWEPIRCHDAV 264 (818)
Q Consensus 242 Lasgs-~d~I~Vwd~~~~~~~~~~ 264 (818)
|+--. ++.|.+||..+++....+
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred EEeecCCceeEEecCCCCceeeee
Confidence 65433 456999998877655433
No 498
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=76.54 E-value=1.2e+02 Score=34.66 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=23.5
Q ss_pred CCeeEEEEeCCCCEEEEEECCC-EEEEEecC
Q 003459 228 SGVRCLTFNPDGRTLLCGLHES-LKVFSWEP 257 (818)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~ 257 (818)
..|.++...+..+.|++...++ |.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4488999998888999887775 99999975
No 499
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=75.79 E-value=39 Score=36.53 Aligned_cols=97 Identities=15% Similarity=0.268 Sum_probs=61.5
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE------CCCcEEEEECCCCeEEEEEec-----CCCCeEEE
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS------LDTNLKIWDIRKKGCIHTYKG-----HTRGVNAI 149 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs------~Dg~I~IwDl~~~~~i~~l~~-----h~~~V~~l 149 (818)
..|++||..+.+-...-.+-.+.|..+.|..+.+.++.|. ....+..||..+.... .+.. -.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEEE
Confidence 4599999888776665556678899999996666666664 3557889998776532 2222 23678888
Q ss_pred EEcC-CCCEEE-EEE-C--CCeEEEEECCCCeEE
Q 003459 150 RFTP-DGRWVV-SGG-E--DNTVKLWDLTAGKLL 178 (818)
Q Consensus 150 ~fsp-dg~~L~-sgs-~--Dg~I~IwDl~t~~~i 178 (818)
.+.. |+..+. .|. . +..|..||-.....+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 7743 343333 333 2 234667765544443
No 500
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.66 E-value=65 Score=40.21 Aligned_cols=232 Identities=11% Similarity=0.025 Sum_probs=108.0
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEE---EE------Ec--CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe
Q 003459 66 SFDSSEVLVAAGAASGTIKLWDLEEAKIV---RT------LT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG 134 (818)
Q Consensus 66 ~fspdg~~Lasgs~DG~I~IWDl~t~~~v---~~------l~--~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~ 134 (818)
++...|+.|+.|+.+|.+.+|.+.....- .. +. -+..+|..+...+.-.++.+- .|+.|.++++.+.+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCccc
Confidence 34456889999999999999998654211 11 10 124556656555544444444 46778888877655
Q ss_pred EEEEEecCCCCeEEEEEc--C-C-C--CEEEEEECC--CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC
Q 003459 135 CIHTYKGHTRGVNAIRFT--P-D-G--RWVVSGGED--NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD 206 (818)
Q Consensus 135 ~i~~l~~h~~~V~~l~fs--p-d-g--~~L~sgs~D--g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D 206 (818)
...... +-.++...++. + + | .+.++.... .....|+-+.+..+..--+......+++| .+..+.+|-.+
T Consensus 100 ~~~~~~-~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~c~~~~~ 176 (877)
T KOG2063|consen 100 PVPSGT-RLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAW--CGHIVCLGLKK 176 (877)
T ss_pred cccccc-ccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhcc--cceeEEEeecc
Confidence 421111 11111111111 1 1 1 122222211 12334554444333222111222223333 24444444443
Q ss_pred CeEEEEECCCCeEE--EEeCC-CCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccceeeeeecCCCEEE
Q 003459 207 RTVKFWDLETFELI--GSAGP-ETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLG 283 (818)
Q Consensus 207 g~I~IwDl~t~~~i--~~~~~-~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLa 283 (818)
....+|...++... ..... ....-..|.-..++..++.|-++-..+-|. .+.....-...|..+-...+.+..+++
T Consensus 177 ~~~ii~~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~kd~~gv~vd~-~G~~~~~~~l~ws~~P~~v~~~~PYlI 255 (877)
T KOG2063|consen 177 SYYIINNTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLGKDNIGVVVDL-NGIIAQRGTLVWSEVPLSVVVESPYLI 255 (877)
T ss_pred eeEEEecCCCccccceeeeccccccCCCeEEEecCCceEEEccCceEEEEec-CCcccCCCceEecccchhhcccCceEE
Confidence 33444443333111 11110 011223444455676777775543334342 333323334455554444455666666
Q ss_pred EEEcCCeEEEEEecCCCcee
Q 003459 284 CSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 284 tg~~Dg~V~IWdvd~~~~~~ 303 (818)
+-... .|.||....+....
T Consensus 256 a~~~~-~veI~s~~~~qlvQ 274 (877)
T KOG2063|consen 256 ALLDR-SVEIRSKLDGQLVQ 274 (877)
T ss_pred EEccc-cEEEEeccCHHHhh
Confidence 55544 99999988885433
Done!