Query 003459
Match_columns 818
No_of_seqs 792 out of 3360
Neff 7.5
Searched_HMMs 29240
Date Tue Mar 26 01:57:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003459.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003459hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.9E-41 6.6E-46 381.7 42.0 287 9-296 101-409 (410)
2 3ow8_A WD repeat-containing pr 100.0 8.6E-41 2.9E-45 364.2 43.1 292 6-297 22-320 (321)
3 3frx_A Guanine nucleotide-bind 100.0 3.9E-40 1.3E-44 358.0 45.4 297 1-299 1-318 (319)
4 1got_B GT-beta; complex (GTP-b 100.0 1.4E-39 4.6E-44 356.7 46.2 287 7-295 46-340 (340)
5 2ynn_A Coatomer subunit beta'; 100.0 5.5E-39 1.9E-43 346.2 42.4 290 7-298 4-302 (304)
6 2pbi_B Guanine nucleotide-bind 100.0 2.2E-38 7.6E-43 349.7 44.6 288 7-295 55-354 (354)
7 2xzm_R RACK1; ribosome, transl 100.0 2.3E-38 8E-43 347.0 42.5 290 7-299 12-341 (343)
8 4ery_A WD repeat-containing pr 100.0 2.1E-37 7.3E-42 333.2 45.1 289 8-297 15-311 (312)
9 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-37 4.5E-42 341.8 43.6 296 5-301 4-338 (345)
10 3iz6_a 40S ribosomal protein R 100.0 7.8E-39 2.7E-43 356.3 33.4 295 5-300 55-377 (380)
11 1erj_A Transcriptional repress 100.0 5.5E-37 1.9E-41 343.0 44.7 287 10-299 58-390 (393)
12 2hes_X YDR267CP; beta-propelle 100.0 6.9E-37 2.4E-41 334.0 43.8 289 6-298 4-328 (330)
13 4aow_A Guanine nucleotide-bind 100.0 2E-36 6.8E-41 326.8 45.8 294 6-300 28-339 (340)
14 3zwl_B Eukaryotic translation 100.0 7.3E-36 2.5E-40 324.7 45.1 293 6-301 22-349 (369)
15 3dm0_A Maltose-binding peripla 100.0 4.2E-36 1.4E-40 360.6 44.9 288 9-297 375-692 (694)
16 1sq9_A Antiviral protein SKI8; 100.0 9.8E-37 3.3E-41 337.4 35.7 296 1-300 1-397 (397)
17 1nr0_A Actin interacting prote 100.0 3.4E-36 1.2E-40 356.5 42.1 290 10-300 141-569 (611)
18 3ow8_A WD repeat-containing pr 100.0 5E-36 1.7E-40 326.5 39.7 246 9-255 73-319 (321)
19 4gqb_B Methylosome protein 50; 100.0 1E-36 3.5E-41 336.0 34.6 285 13-301 27-334 (344)
20 1gxr_A ESG1, transducin-like e 100.0 4.5E-35 1.5E-39 314.9 44.0 286 7-297 42-336 (337)
21 1k8k_C P40, ARP2/3 complex 41 100.0 8.7E-36 3E-40 325.9 38.6 288 12-300 4-363 (372)
22 4g56_B MGC81050 protein; prote 100.0 1.6E-36 5.5E-41 335.4 32.7 287 11-300 37-345 (357)
23 1vyh_C Platelet-activating fac 100.0 5.1E-36 1.7E-40 337.5 36.4 247 8-255 142-409 (410)
24 1nr0_A Actin interacting prote 100.0 1.2E-35 4.1E-40 351.9 41.2 292 7-301 50-400 (611)
25 2ymu_A WD-40 repeat protein; u 100.0 9.9E-35 3.4E-39 338.3 44.0 282 7-295 294-577 (577)
26 1r5m_A SIR4-interacting protei 100.0 6.7E-35 2.3E-39 323.5 40.4 289 8-298 37-425 (425)
27 3k26_A Polycomb protein EED; W 100.0 1.4E-35 4.7E-40 322.7 32.2 284 12-297 14-365 (366)
28 3odt_A Protein DOA1; ubiquitin 100.0 2.3E-34 7.9E-39 306.4 40.9 287 6-303 8-301 (313)
29 2ynn_A Coatomer subunit beta'; 100.0 1.8E-34 6.3E-39 310.9 40.1 251 6-257 45-302 (304)
30 3dwl_C Actin-related protein 2 100.0 8.5E-37 2.9E-41 336.3 22.1 244 11-256 6-280 (377)
31 3ei3_B DNA damage-binding prot 100.0 7.3E-35 2.5E-39 322.3 37.1 288 6-298 63-382 (383)
32 3i2n_A WD repeat-containing pr 100.0 5.5E-35 1.9E-39 317.3 34.0 293 7-300 9-355 (357)
33 4gqb_B Methylosome protein 50; 100.0 1.5E-34 5.1E-39 318.7 37.8 243 13-258 79-332 (344)
34 1got_B GT-beta; complex (GTP-b 100.0 3.3E-34 1.1E-38 313.9 40.0 247 6-254 87-340 (340)
35 2ymu_A WD-40 repeat protein; u 100.0 2E-33 6.9E-38 327.3 46.5 290 6-302 252-543 (577)
36 3v7d_B Cell division control p 100.0 5.2E-33 1.8E-37 315.5 45.7 288 7-303 112-426 (464)
37 3frx_A Guanine nucleotide-bind 100.0 2.9E-33 9.9E-38 303.8 41.5 248 7-258 56-318 (319)
38 3vl1_A 26S proteasome regulato 100.0 6.6E-35 2.2E-39 325.7 29.1 279 19-299 59-366 (420)
39 2pm9_A Protein WEB1, protein t 100.0 4.3E-35 1.5E-39 325.9 25.0 285 14-299 65-415 (416)
40 2pm7_B Protein transport prote 100.0 1.5E-33 5.2E-38 302.6 35.2 247 10-257 3-285 (297)
41 2pbi_B Guanine nucleotide-bind 100.0 5.8E-33 2E-37 306.3 39.2 247 7-254 97-354 (354)
42 4ery_A WD repeat-containing pr 100.0 9.6E-33 3.3E-37 296.8 39.8 258 49-306 13-276 (312)
43 4aez_A CDC20, WD repeat-contai 100.0 7.7E-33 2.6E-37 309.5 40.4 290 8-303 83-385 (401)
44 4e54_B DNA damage-binding prot 100.0 2.1E-34 7.3E-39 326.2 28.0 290 10-301 113-433 (435)
45 3gre_A Serine/threonine-protei 100.0 7.6E-34 2.6E-38 319.8 31.9 289 5-295 51-437 (437)
46 3v7d_B Cell division control p 100.0 3.8E-32 1.3E-36 308.4 44.7 287 5-298 151-463 (464)
47 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-32 3.7E-37 334.6 42.5 295 6-301 3-305 (814)
48 1erj_A Transcriptional repress 100.0 1.5E-32 5.3E-37 306.9 40.3 238 18-257 125-389 (393)
49 1gxr_A ESG1, transducin-like e 100.0 5.6E-33 1.9E-37 298.5 33.9 285 14-302 7-300 (337)
50 2pm9_A Protein WEB1, protein t 100.0 2.6E-34 9.1E-39 319.5 24.0 285 17-302 13-341 (416)
51 1p22_A F-BOX/WD-repeat protein 100.0 1.3E-32 4.5E-37 310.9 37.2 279 10-302 127-418 (435)
52 3f3f_A Nucleoporin SEH1; struc 100.0 1.1E-32 3.9E-37 295.4 34.7 251 11-262 6-342 (351)
53 4a11_B DNA excision repair pro 100.0 2.3E-32 7.9E-37 301.8 38.0 295 8-303 35-370 (408)
54 2hes_X YDR267CP; beta-propelle 100.0 2.2E-32 7.5E-37 298.3 37.2 247 9-257 49-328 (330)
55 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.5E-32 8.7E-37 299.7 37.6 249 12-261 57-339 (345)
56 1pgu_A Actin interacting prote 100.0 2.1E-32 7.3E-37 319.7 39.2 288 13-305 15-335 (615)
57 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.3E-31 4.4E-36 303.2 44.3 282 8-303 110-396 (445)
58 4g56_B MGC81050 protein; prote 100.0 3.9E-33 1.3E-37 308.2 31.0 245 11-258 89-344 (357)
59 2xzm_R RACK1; ribosome, transl 100.0 3.2E-32 1.1E-36 298.2 36.8 246 8-258 68-341 (343)
60 1yfq_A Cell cycle arrest prote 100.0 9.9E-33 3.4E-37 298.5 32.1 277 12-295 7-321 (342)
61 3vl1_A 26S proteasome regulato 100.0 1.6E-32 5.5E-37 306.3 34.7 279 18-298 99-419 (420)
62 3sfz_A APAF-1, apoptotic pepti 100.0 8.5E-32 2.9E-36 342.7 45.1 296 9-305 608-999 (1249)
63 3jrp_A Fusion protein of prote 100.0 2.4E-32 8.3E-37 298.5 33.6 251 8-259 3-289 (379)
64 3iz6_a 40S ribosomal protein R 100.0 5.8E-33 2E-37 308.9 29.1 253 6-259 98-377 (380)
65 1pgu_A Actin interacting prote 100.0 2.6E-31 8.9E-36 310.5 44.0 290 7-299 151-615 (615)
66 3dw8_B Serine/threonine-protei 100.0 2.5E-32 8.7E-37 306.9 34.0 279 15-297 27-445 (447)
67 3bg1_A Protein SEC13 homolog; 100.0 3.6E-33 1.2E-37 302.7 24.4 246 11-257 8-293 (316)
68 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.5E-31 2.6E-35 297.0 43.2 281 6-299 149-443 (445)
69 4gga_A P55CDC, cell division c 100.0 9.4E-31 3.2E-35 294.6 43.0 276 19-300 108-397 (420)
70 1sq9_A Antiviral protein SKI8; 100.0 1.1E-31 3.7E-36 296.9 33.4 250 8-258 54-396 (397)
71 2pm7_B Protein transport prote 100.0 3.3E-31 1.1E-35 284.4 34.8 247 53-299 3-286 (297)
72 3sfz_A APAF-1, apoptotic pepti 100.0 9.9E-31 3.4E-35 332.9 44.8 301 5-307 646-1083(1249)
73 3mkq_A Coatomer beta'-subunit; 100.0 1.3E-30 4.3E-35 316.4 43.3 294 5-300 44-388 (814)
74 2j04_B YDR362CP, TAU91; beta p 100.0 9.9E-33 3.4E-37 321.2 23.5 287 10-300 201-519 (524)
75 3k26_A Polycomb protein EED; W 100.0 1.4E-31 4.8E-36 291.0 30.8 240 15-256 68-365 (366)
76 2aq5_A Coronin-1A; WD40 repeat 100.0 1.5E-31 5.3E-36 298.5 31.7 287 17-305 35-349 (402)
77 4ggc_A P55CDC, cell division c 100.0 5.6E-30 1.9E-34 273.5 41.1 274 19-298 28-315 (318)
78 3mmy_A MRNA export factor; mRN 100.0 6.4E-31 2.2E-35 285.6 33.4 287 5-295 28-343 (368)
79 1r5m_A SIR4-interacting protei 100.0 2.1E-30 7.1E-35 287.3 37.8 239 15-256 107-424 (425)
80 3zwl_B Eukaryotic translation 100.0 4.5E-30 1.5E-34 279.0 39.4 252 6-260 64-349 (369)
81 3dm0_A Maltose-binding peripla 100.0 2.8E-30 9.6E-35 309.9 39.5 246 8-256 422-692 (694)
82 3ei3_B DNA damage-binding prot 100.0 9.8E-31 3.4E-35 289.1 32.7 241 12-257 114-382 (383)
83 4h5i_A Guanine nucleotide-exch 100.0 1.1E-30 3.8E-35 289.6 32.7 279 16-299 14-344 (365)
84 4aez_A CDC20, WD repeat-contai 100.0 4.6E-30 1.6E-34 287.0 37.3 244 15-262 133-385 (401)
85 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-29 3.8E-34 270.2 37.7 248 6-262 49-301 (313)
86 3jrp_A Fusion protein of prote 100.0 3.5E-30 1.2E-34 281.4 34.4 251 50-300 2-289 (379)
87 1k8k_C P40, ARP2/3 complex 41 100.0 4.1E-30 1.4E-34 280.9 34.7 249 8-258 44-362 (372)
88 3i2n_A WD repeat-containing pr 100.0 1.2E-30 4.1E-35 283.0 29.8 247 12-259 61-355 (357)
89 3f3f_A Nucleoporin SEH1; struc 100.0 6.6E-30 2.3E-34 273.8 35.0 251 53-303 5-342 (351)
90 4aow_A Guanine nucleotide-bind 100.0 5.7E-29 1.9E-33 268.3 42.3 250 7-259 77-339 (340)
91 2xyi_A Probable histone-bindin 100.0 2.3E-30 7.7E-35 292.9 31.9 252 7-258 119-411 (430)
92 2oaj_A Protein SNI1; WD40 repe 100.0 6.5E-30 2.2E-34 316.1 38.2 162 13-178 55-246 (902)
93 3bg1_A Protein SEC13 homolog; 100.0 8.4E-31 2.9E-35 284.0 25.5 246 54-299 8-294 (316)
94 2vdu_B TRNA (guanine-N(7)-)-me 100.0 7.3E-30 2.5E-34 290.0 34.4 280 17-300 5-393 (450)
95 2aq5_A Coronin-1A; WD40 repeat 100.0 2.7E-30 9.3E-35 288.4 29.4 251 9-260 74-345 (402)
96 4gga_A P55CDC, cell division c 100.0 8E-29 2.7E-33 278.8 40.3 250 7-260 138-398 (420)
97 2oaj_A Protein SNI1; WD40 repe 100.0 4.3E-29 1.5E-33 308.8 40.3 285 11-300 12-385 (902)
98 4e54_B DNA damage-binding prot 100.0 1.3E-30 4.3E-35 295.2 22.9 254 6-260 154-433 (435)
99 3dw8_B Serine/threonine-protei 100.0 1.4E-29 4.7E-34 284.6 30.6 245 58-303 27-378 (447)
100 3jro_A Fusion protein of prote 100.0 5.3E-30 1.8E-34 311.1 27.7 249 10-259 3-287 (753)
101 4a11_B DNA excision repair pro 100.0 5.1E-29 1.7E-33 275.0 32.8 282 14-297 97-404 (408)
102 3gre_A Serine/threonine-protei 100.0 3.8E-30 1.3E-34 289.6 24.3 263 43-307 47-368 (437)
103 3lrv_A PRE-mRNA-splicing facto 100.0 2.6E-29 8.9E-34 274.8 29.0 265 28-302 47-337 (343)
104 3bws_A Protein LP49; two-domai 100.0 2.6E-28 8.8E-33 273.7 37.5 286 7-298 114-432 (433)
105 3dwl_C Actin-related protein 2 100.0 2.9E-30 9.8E-35 284.1 20.2 242 55-298 7-281 (377)
106 4h5i_A Guanine nucleotide-exch 100.0 4.4E-29 1.5E-33 276.7 28.4 243 11-258 68-344 (365)
107 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-28 4.7E-33 271.4 31.5 281 7-300 10-338 (355)
108 2j04_B YDR362CP, TAU91; beta p 100.0 6.1E-30 2.1E-34 297.7 21.4 242 15-257 132-428 (524)
109 4ggc_A P55CDC, cell division c 100.0 1.4E-27 4.9E-32 254.8 37.7 247 7-257 58-315 (318)
110 1p22_A F-BOX/WD-repeat protein 100.0 1.9E-28 6.7E-33 276.8 32.2 242 6-260 163-417 (435)
111 2xyi_A Probable histone-bindin 100.0 2.8E-28 9.5E-33 275.7 32.7 285 17-301 46-413 (430)
112 1l0q_A Surface layer protein; 100.0 6E-27 2E-31 258.9 40.6 270 29-303 2-280 (391)
113 4gq1_A NUP37; propeller, trans 100.0 5.4E-29 1.9E-33 278.5 23.2 229 28-256 100-388 (393)
114 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.4E-28 1.9E-32 274.6 31.6 245 11-257 97-391 (450)
115 1yfq_A Cell cycle arrest prote 100.0 4.3E-28 1.5E-32 262.0 29.1 234 8-249 48-314 (342)
116 2j04_A TAU60, YPL007P, hypothe 100.0 6.3E-29 2.2E-33 285.8 21.7 261 13-297 12-296 (588)
117 1l0q_A Surface layer protein; 100.0 3.9E-26 1.3E-30 252.3 42.3 257 6-268 22-286 (391)
118 3jro_A Fusion protein of prote 100.0 7.5E-28 2.6E-32 292.2 29.5 248 53-300 3-287 (753)
119 3mmy_A MRNA export factor; mRN 100.0 3.4E-26 1.2E-30 248.2 30.8 235 10-249 80-337 (368)
120 2j04_A TAU60, YPL007P, hypothe 99.9 7.8E-28 2.7E-32 276.7 15.8 256 11-302 47-325 (588)
121 3lrv_A PRE-mRNA-splicing facto 99.9 1.6E-26 5.4E-31 252.7 24.0 229 67-300 44-294 (343)
122 4gq1_A NUP37; propeller, trans 99.9 3.9E-26 1.3E-30 255.3 27.5 276 17-294 16-386 (393)
123 3bws_A Protein LP49; two-domai 99.9 1.3E-24 4.5E-29 243.4 35.7 241 12-257 165-432 (433)
124 2w18_A PALB2, fancn, partner a 99.9 9E-25 3.1E-29 237.4 31.6 245 8-255 27-355 (356)
125 3vu4_A KMHSV2; beta-propeller 99.9 1.8E-24 6.2E-29 238.4 28.7 246 43-300 3-273 (355)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 8E-25 2.7E-29 246.9 26.2 284 17-306 63-395 (415)
127 2w18_A PALB2, fancn, partner a 99.9 3.6E-24 1.2E-28 232.7 26.3 175 38-214 156-355 (356)
128 1nir_A Nitrite reductase; hemo 99.9 7.2E-23 2.5E-27 239.3 38.6 295 7-306 170-522 (543)
129 3u4y_A Uncharacterized protein 99.9 2.3E-22 7.9E-27 216.8 33.6 278 22-302 3-308 (331)
130 3vgz_A Uncharacterized protein 99.9 1.9E-21 6.6E-26 210.7 38.9 271 15-288 39-334 (353)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.5E-22 8.6E-27 226.5 29.0 241 10-257 111-387 (415)
132 1pby_B Quinohemoprotein amine 99.9 1.2E-21 4E-26 210.4 31.9 269 30-303 2-315 (337)
133 1ri6_A Putative isomerase YBHE 99.9 3E-21 1E-25 207.7 34.3 266 29-298 5-308 (343)
134 2ecf_A Dipeptidyl peptidase IV 99.9 2.7E-22 9.1E-27 241.4 28.9 278 16-298 36-413 (741)
135 1nir_A Nitrite reductase; hemo 99.9 1.1E-21 3.8E-26 229.2 32.8 275 23-302 144-462 (543)
136 2ojh_A Uncharacterized protein 99.9 1.5E-21 5E-26 204.3 22.4 237 8-248 33-292 (297)
137 3u4y_A Uncharacterized protein 99.9 3.5E-20 1.2E-24 199.7 33.3 250 8-260 32-307 (331)
138 2ojh_A Uncharacterized protein 99.9 4.3E-21 1.5E-25 200.8 25.2 252 34-289 17-293 (297)
139 1xfd_A DIP, dipeptidyl aminope 99.9 1E-21 3.5E-26 235.4 22.5 279 18-300 18-395 (723)
140 2z3z_A Dipeptidyl aminopeptida 99.9 9.8E-21 3.4E-25 226.7 30.5 278 17-300 82-437 (706)
141 2ecf_A Dipeptidyl peptidase IV 99.9 8.7E-21 3E-25 228.2 29.0 277 18-300 110-461 (741)
142 1ri6_A Putative isomerase YBHE 99.9 7.3E-20 2.5E-24 196.8 32.6 242 12-257 33-308 (343)
143 3vgz_A Uncharacterized protein 99.9 1.4E-19 4.9E-24 195.9 34.8 230 16-248 88-334 (353)
144 1pby_B Quinohemoprotein amine 99.9 1.2E-19 4.1E-24 194.6 29.4 243 18-267 35-320 (337)
145 1k32_A Tricorn protease; prote 99.9 4.6E-20 1.6E-24 231.5 28.1 282 9-299 196-503 (1045)
146 1jmx_B Amine dehydrogenase; ox 99.8 2.5E-19 8.6E-24 193.4 28.6 277 21-303 4-330 (349)
147 1k32_A Tricorn protease; prote 99.8 1.2E-19 4.2E-24 227.7 29.9 275 15-300 294-639 (1045)
148 2oit_A Nucleoporin 214KDA; NH2 99.8 1.1E-19 3.8E-24 206.3 26.5 238 15-255 35-331 (434)
149 3o4h_A Acylamino-acid-releasin 99.8 9E-20 3.1E-24 213.7 26.2 269 16-299 21-314 (582)
150 3hfq_A Uncharacterized protein 99.8 1.9E-18 6.4E-23 188.1 34.5 266 37-303 14-324 (347)
151 3hfq_A Uncharacterized protein 99.8 1.9E-18 6.5E-23 188.0 32.9 245 12-257 35-317 (347)
152 2z3z_A Dipeptidyl aminopeptida 99.8 3.1E-19 1.1E-23 213.7 27.4 276 19-303 28-396 (706)
153 1xfd_A DIP, dipeptidyl aminope 99.8 5.1E-19 1.8E-23 212.0 26.1 276 9-287 50-429 (723)
154 3scy_A Hypothetical bacterial 99.8 1.3E-17 4.3E-22 182.7 34.7 239 15-257 48-337 (361)
155 3scy_A Hypothetical bacterial 99.8 1.6E-17 5.3E-22 182.0 35.3 269 29-299 13-338 (361)
156 1z68_A Fibroblast activation p 99.8 6.1E-20 2.1E-24 220.4 17.6 273 21-298 20-391 (719)
157 2oit_A Nucleoporin 214KDA; NH2 99.8 8E-19 2.7E-23 199.3 22.6 210 39-258 23-279 (434)
158 3pe7_A Oligogalacturonate lyas 99.8 2.9E-18 9.8E-23 188.9 25.6 292 6-300 20-384 (388)
159 4a5s_A Dipeptidyl peptidase 4 99.8 4.7E-18 1.6E-22 205.5 26.6 278 17-300 17-400 (740)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.5E-17 1.9E-21 178.9 32.8 270 31-301 4-344 (365)
161 3azo_A Aminopeptidase; POP fam 99.8 3.8E-17 1.3E-21 194.0 29.5 291 11-304 18-375 (662)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 5.5E-17 1.9E-21 178.9 28.6 242 15-258 38-342 (365)
163 3c5m_A Oligogalacturonate lyas 99.8 2E-17 6.8E-22 182.0 19.6 289 7-299 21-383 (396)
164 1jmx_B Amine dehydrogenase; ox 99.7 2.9E-16 9.8E-21 169.3 26.1 212 8-226 33-335 (349)
165 1q7f_A NHL, brain tumor CG1071 99.7 2.2E-15 7.4E-20 159.3 32.4 238 15-258 28-281 (286)
166 3pe7_A Oligogalacturonate lyas 99.7 3.5E-16 1.2E-20 172.2 27.2 265 43-308 14-339 (388)
167 3o4h_A Acylamino-acid-releasin 99.7 1.3E-16 4.3E-21 186.9 23.2 235 9-258 56-314 (582)
168 3fvz_A Peptidyl-glycine alpha- 99.7 1.5E-15 5.1E-20 165.2 29.7 239 16-257 23-322 (329)
169 2gop_A Trilobed protease; beta 99.7 2.8E-15 9.6E-20 162.5 31.8 270 7-303 6-335 (347)
170 1z68_A Fibroblast activation p 99.7 3.9E-17 1.3E-21 196.0 18.2 279 18-301 61-446 (719)
171 3e5z_A Putative gluconolactona 99.7 3.2E-15 1.1E-19 159.2 30.8 246 7-260 18-289 (296)
172 4a5s_A Dipeptidyl peptidase 4 99.7 1.1E-15 3.8E-20 184.7 25.5 244 60-307 17-362 (740)
173 3azo_A Aminopeptidase; POP fam 99.7 1.8E-15 6E-20 179.6 26.0 249 9-260 60-372 (662)
174 3c5m_A Oligogalacturonate lyas 99.7 1.3E-15 4.4E-20 167.4 21.1 262 42-306 13-337 (396)
175 2z2n_A Virginiamycin B lyase; 99.7 4.5E-13 1.5E-17 141.0 39.7 283 11-301 9-298 (299)
176 3fvz_A Peptidyl-glycine alpha- 99.7 1.9E-14 6.4E-19 156.4 29.3 240 59-300 23-324 (329)
177 2oiz_A Aromatic amine dehydrog 99.7 1.5E-14 5.3E-19 159.7 29.0 263 9-279 44-359 (361)
178 2oiz_A Aromatic amine dehydrog 99.7 1.2E-14 4E-19 160.7 27.6 260 37-303 29-341 (361)
179 2dg1_A DRP35, lactonase; beta 99.7 1.3E-13 4.6E-18 148.7 34.5 247 8-257 36-314 (333)
180 1q7f_A NHL, brain tumor CG1071 99.7 1.1E-13 3.7E-18 146.2 32.3 236 57-298 27-280 (286)
181 2dg1_A DRP35, lactonase; beta 99.6 4.1E-14 1.4E-18 152.7 28.4 275 17-298 6-314 (333)
182 1qks_A Cytochrome CD1 nitrite 99.6 4.1E-13 1.4E-17 157.2 38.4 275 28-305 166-545 (567)
183 2xdw_A Prolyl endopeptidase; a 99.6 4.6E-14 1.6E-18 169.7 29.6 242 15-259 123-416 (710)
184 3dsm_A Uncharacterized protein 99.6 2E-13 7E-18 148.5 31.5 268 37-311 15-315 (328)
185 3e5z_A Putative gluconolactona 99.6 2.3E-13 8E-18 144.7 29.9 247 49-303 17-291 (296)
186 3no2_A Uncharacterized protein 99.6 8.4E-14 2.9E-18 148.2 26.3 214 29-248 5-233 (276)
187 2gop_A Trilobed protease; beta 99.6 6.7E-14 2.3E-18 151.6 25.8 220 17-256 59-330 (347)
188 2xdw_A Prolyl endopeptidase; a 99.6 2.3E-13 7.9E-18 163.5 33.0 273 26-300 81-416 (710)
189 1rwi_B Serine/threonine-protei 99.6 8.8E-14 3E-18 145.1 24.3 240 18-259 25-266 (270)
190 3dsm_A Uncharacterized protein 99.6 5.8E-13 2E-17 144.9 29.3 245 17-270 44-314 (328)
191 2bkl_A Prolyl endopeptidase; m 99.6 5.4E-13 1.8E-17 160.0 29.3 276 25-305 76-404 (695)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 99.6 1.8E-12 6.1E-17 138.0 29.4 242 11-257 12-299 (314)
193 2bkl_A Prolyl endopeptidase; m 99.5 1.8E-13 6.2E-18 164.1 21.3 240 14-259 118-399 (695)
194 2mad_H Methylamine dehydrogena 99.5 2.5E-11 8.5E-16 134.8 36.7 272 24-304 28-356 (373)
195 1rwi_B Serine/threonine-protei 99.5 9.1E-13 3.1E-17 137.3 23.6 238 61-300 25-266 (270)
196 2qc5_A Streptogramin B lactona 99.5 7.2E-11 2.5E-15 124.1 38.1 274 14-296 17-298 (300)
197 2z2n_A Virginiamycin B lyase; 99.5 3.4E-11 1.1E-15 126.6 35.2 238 14-258 54-296 (299)
198 3no2_A Uncharacterized protein 99.5 6.2E-12 2.1E-16 133.7 27.2 222 70-297 4-250 (276)
199 3g4e_A Regucalcin; six bladed 99.5 2.2E-11 7.6E-16 130.1 31.7 229 13-247 9-261 (297)
200 1yr2_A Prolyl oligopeptidase; 99.5 4.4E-12 1.5E-16 153.2 26.1 239 17-259 163-443 (741)
201 1yr2_A Prolyl oligopeptidase; 99.5 1.1E-11 3.7E-16 149.8 29.0 275 25-303 115-446 (741)
202 1qks_A Cytochrome CD1 nitrite 99.5 6.3E-11 2.1E-15 138.7 33.9 247 16-265 196-546 (567)
203 2ghs_A AGR_C_1268P; regucalcin 99.4 1.1E-10 3.7E-15 126.7 33.5 222 18-247 50-291 (326)
204 3sjl_D Methylamine dehydrogena 99.4 3.4E-11 1.2E-15 133.6 29.1 277 22-304 38-369 (386)
205 3dr2_A Exported gluconolactona 99.4 2.8E-11 9.5E-16 129.7 27.2 238 8-254 36-303 (305)
206 3hrp_A Uncharacterized protein 99.4 1.1E-10 3.8E-15 131.1 32.2 234 17-255 131-408 (409)
207 3c75_H MADH, methylamine dehyd 99.4 2E-11 7E-16 137.4 26.0 272 28-305 84-409 (426)
208 2mad_H Methylamine dehydrogena 99.4 4.9E-10 1.7E-14 124.4 36.7 251 9-269 60-363 (373)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1E-10 3.4E-15 124.4 28.8 238 58-299 16-300 (314)
210 2qc5_A Streptogramin B lactona 99.4 6.9E-10 2.4E-14 116.5 33.9 233 15-254 60-297 (300)
211 1xip_A Nucleoporin NUP159; bet 99.3 1.3E-11 4.4E-16 137.3 17.0 172 18-204 39-232 (388)
212 3hrp_A Uncharacterized protein 99.3 7.4E-10 2.5E-14 124.4 29.9 234 60-296 131-408 (409)
213 1xip_A Nucleoporin NUP159; bet 99.3 2.3E-11 7.7E-16 135.3 17.1 170 61-244 39-230 (388)
214 2hz6_A Endoplasmic reticulum t 99.3 4.5E-14 1.5E-18 156.6 -5.4 258 29-298 9-279 (369)
215 3sjl_D Methylamine dehydrogena 99.3 7.6E-10 2.6E-14 122.7 27.7 256 8-270 71-376 (386)
216 1yiq_A Quinohemoprotein alcoho 99.3 3.8E-10 1.3E-14 135.3 26.5 271 31-303 72-510 (689)
217 2qe8_A Uncharacterized protein 99.3 4.5E-10 1.5E-14 122.7 24.2 228 17-247 17-310 (343)
218 1kb0_A Quinohemoprotein alcoho 99.3 6.9E-10 2.3E-14 132.8 27.3 269 31-303 79-512 (677)
219 3iuj_A Prolyl endopeptidase; h 99.3 2.7E-10 9.2E-15 136.6 23.5 240 14-259 126-407 (693)
220 3q7m_A Lipoprotein YFGL, BAMB; 99.3 4.1E-09 1.4E-13 115.8 31.2 263 31-303 55-342 (376)
221 3iuj_A Prolyl endopeptidase; h 99.2 3.2E-10 1.1E-14 136.0 23.2 243 57-305 126-412 (693)
222 3dr2_A Exported gluconolactona 99.2 1.6E-09 5.5E-14 115.9 25.7 231 50-289 35-298 (305)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.2 7.3E-09 2.5E-13 113.8 31.3 256 30-295 104-375 (376)
224 3g4e_A Regucalcin; six bladed 99.2 8.8E-09 3E-13 109.8 30.5 225 57-287 10-261 (297)
225 3c75_H MADH, methylamine dehyd 99.2 1.9E-09 6.4E-14 121.4 24.8 256 7-269 110-415 (426)
226 1mda_H Methylamine dehydrogena 99.2 7.5E-10 2.6E-14 122.5 20.9 263 29-305 32-353 (368)
227 3hxj_A Pyrrolo-quinoline quino 99.1 4.5E-10 1.6E-14 120.2 16.0 267 18-301 61-327 (330)
228 3hxj_A Pyrrolo-quinoline quino 99.1 1.9E-10 6.5E-15 123.2 12.6 252 31-297 32-283 (330)
229 2ghs_A AGR_C_1268P; regucalcin 99.1 4.2E-08 1.4E-12 106.2 31.0 217 61-285 50-289 (326)
230 1kb0_A Quinohemoprotein alcoho 99.1 1.1E-08 3.6E-13 122.5 27.7 236 30-268 129-518 (677)
231 2ece_A 462AA long hypothetical 99.1 1.7E-08 5.7E-13 113.1 26.0 220 26-246 93-399 (462)
232 1yiq_A Quinohemoprotein alcoho 99.1 4.3E-08 1.5E-12 117.5 29.6 255 30-286 122-537 (689)
233 1kv9_A Type II quinohemoprotei 99.0 3.3E-08 1.1E-12 118.0 27.7 271 31-303 68-493 (668)
234 1npe_A Nidogen, entactin; glyc 99.0 6.6E-07 2.2E-11 93.4 33.4 220 18-240 37-263 (267)
235 2qe8_A Uncharacterized protein 99.0 1.2E-08 4.1E-13 111.3 20.4 230 60-304 17-284 (343)
236 2ece_A 462AA long hypothetical 99.0 3.5E-07 1.2E-11 102.5 31.0 246 40-286 44-399 (462)
237 1mda_H Methylamine dehydrogena 99.0 9.3E-09 3.2E-13 113.7 17.0 250 6-270 56-359 (368)
238 2hz6_A Endoplasmic reticulum t 98.9 1E-10 3.4E-15 129.6 0.6 187 70-265 8-200 (369)
239 2iwa_A Glutamine cyclotransfer 98.9 1.9E-07 6.4E-12 98.4 25.3 201 51-257 11-237 (266)
240 1fwx_A Nitrous oxide reductase 98.9 1.9E-07 6.4E-12 108.0 26.9 270 31-304 17-437 (595)
241 1w6s_A Methanol dehydrogenase 98.9 3.5E-07 1.2E-11 107.4 29.2 271 31-303 64-508 (599)
242 1fwx_A Nitrous oxide reductase 98.9 2.7E-08 9.4E-13 114.9 18.8 218 27-247 100-407 (595)
243 2ad6_A Methanol dehydrogenase 98.9 4.9E-07 1.7E-11 105.8 29.6 268 31-303 64-499 (571)
244 3nol_A Glutamine cyclotransfer 98.9 3.4E-07 1.2E-11 95.5 24.0 198 51-255 33-252 (262)
245 4a2l_A BT_4663, two-component 98.9 1E-05 3.4E-10 98.3 40.7 276 16-301 214-529 (795)
246 1npe_A Nidogen, entactin; glyc 98.8 3.2E-06 1.1E-10 88.1 29.7 230 72-303 2-243 (267)
247 2iwa_A Glutamine cyclotransfer 98.8 1.4E-06 4.7E-11 91.7 26.0 203 9-217 12-238 (266)
248 4a2l_A BT_4663, two-component 98.8 2E-05 6.8E-10 95.6 39.6 278 17-305 263-578 (795)
249 1flg_A Protein (quinoprotein e 98.8 4.5E-06 1.5E-10 97.9 32.0 272 28-303 68-521 (582)
250 2fp8_A Strictosidine synthase; 98.7 4.8E-06 1.6E-10 89.4 27.6 233 60-298 19-313 (322)
251 3nok_A Glutaminyl cyclase; bet 98.7 1.8E-06 6.3E-11 90.1 22.5 195 50-254 44-261 (268)
252 3mbr_X Glutamine cyclotransfer 98.7 5.8E-06 2E-10 85.5 26.1 197 51-255 11-231 (243)
253 1kv9_A Type II quinohemoprotei 98.7 3.7E-06 1.3E-10 100.2 28.0 236 31-267 119-498 (668)
254 3nol_A Glutamine cyclotransfer 98.7 4.1E-06 1.4E-10 87.4 24.3 185 14-206 38-245 (262)
255 2ad6_A Methanol dehydrogenase 98.7 5.7E-06 2E-10 96.8 28.4 234 31-268 117-505 (571)
256 2p4o_A Hypothetical protein; p 98.6 2.7E-05 9.2E-10 83.1 30.5 233 8-248 24-278 (306)
257 2fp8_A Strictosidine synthase; 98.6 1.2E-05 4E-10 86.3 27.1 238 12-256 14-312 (322)
258 3v9f_A Two-component system se 98.6 4.7E-05 1.6E-09 92.1 34.4 282 16-305 257-575 (781)
259 3v9f_A Two-component system se 98.6 6E-05 2E-09 91.2 35.3 280 17-305 211-531 (781)
260 3nok_A Glutaminyl cyclase; bet 98.6 1.7E-05 5.7E-10 82.9 25.1 186 9-204 46-253 (268)
261 3mbr_X Glutamine cyclotransfer 98.5 3.5E-05 1.2E-09 79.6 26.6 191 8-205 10-223 (243)
262 1w6s_A Methanol dehydrogenase 98.5 1.2E-05 4E-10 94.6 24.3 234 32-268 124-514 (599)
263 3v64_C Agrin; beta propeller, 98.5 0.00023 7.7E-09 77.8 32.8 233 61-296 35-273 (349)
264 1flg_A Protein (quinoprotein e 98.5 5.1E-05 1.7E-09 88.9 29.1 237 31-269 119-528 (582)
265 1ijq_A LDL receptor, low-densi 98.4 0.00044 1.5E-08 74.2 33.5 226 73-300 3-240 (316)
266 3qqz_A Putative uncharacterize 98.4 7.9E-05 2.7E-09 77.8 26.1 201 11-214 21-251 (255)
267 1k3i_A Galactose oxidase precu 98.4 9.8E-06 3.4E-10 96.3 21.7 267 21-287 190-530 (656)
268 2xbg_A YCF48-like protein; pho 98.4 0.00077 2.6E-08 72.7 34.9 277 7-296 27-320 (327)
269 3v64_C Agrin; beta propeller, 98.4 0.00025 8.5E-09 77.4 30.7 208 15-223 71-282 (349)
270 2xe4_A Oligopeptidase B; hydro 98.4 6.7E-05 2.3E-09 90.6 28.3 153 61-216 175-354 (751)
271 3qqz_A Putative uncharacterize 98.4 9.6E-05 3.3E-09 77.1 25.2 200 54-257 21-251 (255)
272 1ijq_A LDL receptor, low-densi 98.3 0.00073 2.5E-08 72.5 32.6 207 14-223 27-245 (316)
273 3v65_B Low-density lipoprotein 98.3 0.00019 6.4E-09 79.5 28.0 209 15-224 114-326 (386)
274 3v65_B Low-density lipoprotein 98.3 0.00027 9.2E-09 78.3 29.1 234 63-299 80-319 (386)
275 2p4o_A Hypothetical protein; p 98.3 0.0005 1.7E-08 73.1 30.1 201 50-256 23-241 (306)
276 3p5b_L Low density lipoprotein 98.3 0.0011 3.7E-08 73.8 33.0 221 13-234 108-338 (400)
277 2xe4_A Oligopeptidase B; hydro 98.3 5.9E-05 2E-09 91.1 24.2 192 18-214 175-398 (751)
278 3p5b_L Low density lipoprotein 98.2 0.0011 3.6E-08 73.9 32.0 226 73-300 85-322 (400)
279 3tc9_A Hypothetical hydrolase; 98.2 0.00034 1.2E-08 78.7 27.5 234 18-256 138-429 (430)
280 4hw6_A Hypothetical protein, I 98.2 0.00054 1.9E-08 77.1 27.4 234 18-256 140-432 (433)
281 3sov_A LRP-6, low-density lipo 98.1 0.001 3.4E-08 71.7 26.8 227 73-301 6-241 (318)
282 3sov_A LRP-6, low-density lipo 98.1 0.001 3.5E-08 71.7 26.7 205 18-223 36-245 (318)
283 1k3i_A Galactose oxidase precu 98.0 3.7E-05 1.3E-09 91.3 14.0 240 64-303 190-502 (656)
284 3kya_A Putative phosphatase; s 98.0 0.0021 7.3E-08 73.2 27.6 241 18-260 140-478 (496)
285 3amr_A 3-phytase; beta-propell 97.9 0.0015 5.2E-08 70.8 24.5 182 70-256 39-262 (355)
286 3s94_A LRP-6, low-density lipo 97.9 0.013 4.4E-07 69.0 34.4 203 15-218 38-245 (619)
287 3m0c_C LDL receptor, low-densi 97.9 0.0066 2.2E-07 73.4 32.4 226 73-300 397-634 (791)
288 3tc9_A Hypothetical hydrolase; 97.9 0.0023 8E-08 71.8 26.2 152 61-215 138-300 (430)
289 3amr_A 3-phytase; beta-propell 97.9 0.0029 1E-07 68.6 24.9 190 30-224 41-272 (355)
290 3m0c_C LDL receptor, low-densi 97.8 0.0086 2.9E-07 72.4 31.1 208 12-220 419-636 (791)
291 2ism_A Putative oxidoreductase 97.8 0.005 1.7E-07 67.1 26.7 230 7-246 21-333 (352)
292 2xbg_A YCF48-like protein; pho 97.8 0.0045 1.6E-07 66.5 26.0 227 16-256 79-319 (327)
293 4hw6_A Hypothetical protein, I 97.8 0.0034 1.2E-07 70.6 25.1 152 61-215 140-303 (433)
294 2xzh_A Clathrin heavy chain 1; 97.8 0.061 2.1E-06 57.5 32.6 262 39-308 49-342 (365)
295 2p9w_A MAL S 1 allergenic prot 97.7 0.0038 1.3E-07 67.2 23.1 207 12-219 8-268 (334)
296 3a9g_A Putative uncharacterize 97.7 0.027 9.3E-07 61.3 29.6 236 5-246 17-330 (354)
297 1bpo_A Protein (clathrin); cla 97.7 0.11 3.7E-06 57.7 33.5 263 38-308 47-341 (494)
298 3s94_A LRP-6, low-density lipo 97.6 0.05 1.7E-06 64.0 33.1 287 16-304 170-516 (619)
299 2vpj_A Kelch-like protein 12; 97.6 0.003 1E-07 66.5 19.9 226 70-303 14-283 (301)
300 4a0p_A LRP6, LRP-6, low-densit 97.6 0.047 1.6E-06 64.3 32.0 200 17-219 37-240 (628)
301 2p9w_A MAL S 1 allergenic prot 97.6 0.0099 3.4E-07 63.9 23.7 191 55-246 8-252 (334)
302 4a0p_A LRP6, LRP-6, low-densit 97.6 0.22 7.4E-06 58.6 40.7 156 145-301 390-552 (628)
303 1n7d_A LDL receptor, low-densi 97.6 0.00012 4.1E-09 87.7 9.8 217 17-234 406-632 (699)
304 2vpj_A Kelch-like protein 12; 97.6 0.0023 8E-08 67.3 18.7 210 28-247 14-262 (301)
305 3ott_A Two-component system se 97.5 0.11 3.9E-06 62.1 35.0 261 16-294 21-303 (758)
306 2xn4_A Kelch-like protein 2; s 97.5 0.005 1.7E-07 64.8 20.1 221 29-258 16-277 (302)
307 3ii7_A Kelch-like protein 7; p 97.5 0.0068 2.3E-07 63.9 20.3 222 29-258 12-273 (306)
308 1n7d_A LDL receptor, low-densi 97.5 0.00027 9.3E-09 84.5 10.4 223 79-302 384-618 (699)
309 3ii7_A Kelch-like protein 7; p 97.5 0.01 3.6E-07 62.5 21.7 225 72-303 13-277 (306)
310 2xn4_A Kelch-like protein 2; s 97.4 0.0079 2.7E-07 63.3 19.7 225 71-302 16-280 (302)
311 2g8s_A Glucose/sorbosone dehyd 97.4 0.045 1.5E-06 59.5 26.0 246 5-256 6-351 (353)
312 2xzh_A Clathrin heavy chain 1; 97.3 0.26 9E-06 52.7 29.9 209 22-236 72-310 (365)
313 3kya_A Putative phosphatase; s 97.3 0.095 3.3E-06 59.6 27.6 153 62-215 141-340 (496)
314 3ei3_A DNA damage-binding prot 97.2 0.37 1.3E-05 60.7 35.3 285 15-306 552-965 (1158)
315 3das_A Putative oxidoreductase 97.2 0.35 1.2E-05 52.4 30.1 237 6-246 21-326 (347)
316 1zgk_A Kelch-like ECH-associat 97.2 0.0086 3E-07 63.4 17.0 185 28-220 24-244 (308)
317 4asc_A Kelch repeat and BTB do 97.1 0.03 1E-06 59.3 21.0 184 31-220 7-225 (315)
318 2ism_A Putative oxidoreductase 97.1 0.11 3.8E-06 56.3 25.4 141 60-205 31-222 (352)
319 3ott_A Two-component system se 97.1 0.83 2.8E-05 54.5 36.3 224 17-253 63-303 (758)
320 3sre_A PON1, serum paraoxonase 97.1 0.042 1.5E-06 59.9 21.8 199 55-257 45-296 (355)
321 1bpo_A Protein (clathrin); cla 97.0 0.47 1.6E-05 52.7 29.1 206 23-234 72-307 (494)
322 3s25_A Hypothetical 7-bladed b 97.0 0.27 9.3E-06 52.2 26.9 199 25-247 22-242 (302)
323 1zgk_A Kelch-like ECH-associat 97.0 0.024 8.1E-07 59.9 18.5 226 70-303 24-292 (308)
324 3a9g_A Putative uncharacterize 96.9 0.57 1.9E-05 50.7 28.8 194 60-257 29-296 (354)
325 2woz_A Kelch repeat and BTB do 96.8 0.079 2.7E-06 56.0 20.8 183 31-219 18-234 (318)
326 4asc_A Kelch repeat and BTB do 96.8 0.098 3.3E-06 55.2 21.4 211 73-288 7-253 (315)
327 2woz_A Kelch repeat and BTB do 96.7 0.11 3.7E-06 54.9 21.2 209 73-288 18-263 (318)
328 3sre_A PON1, serum paraoxonase 96.7 0.062 2.1E-06 58.6 18.8 200 19-223 52-307 (355)
329 3ei3_A DNA damage-binding prot 96.5 3.2 0.00011 52.2 35.2 221 73-299 708-1000(1158)
330 2uvk_A YJHT; unknown function, 96.4 0.046 1.6E-06 58.8 15.5 228 28-262 19-347 (357)
331 1xi4_A Clathrin heavy chain; a 96.4 0.21 7E-06 63.0 22.4 262 38-308 47-341 (1630)
332 2uvk_A YJHT; unknown function, 96.3 0.12 4.2E-06 55.4 18.1 231 70-303 19-347 (357)
333 3sbq_A Nitrous-oxide reductase 96.1 0.66 2.3E-05 52.9 23.1 253 31-286 72-453 (638)
334 2be1_A Serine/threonine-protei 96.0 0.031 1.1E-06 60.5 11.6 189 30-221 11-236 (339)
335 3pbp_A Nucleoporin NUP82; beta 96.0 0.32 1.1E-05 53.9 19.4 141 69-212 30-208 (452)
336 3pbp_A Nucleoporin NUP82; beta 95.9 0.55 1.9E-05 52.0 21.0 140 28-170 31-208 (452)
337 2be1_A Serine/threonine-protei 95.8 0.33 1.1E-05 52.4 18.3 145 72-217 11-184 (339)
338 3sbq_A Nitrous-oxide reductase 95.7 0.69 2.4E-05 52.8 20.7 226 73-299 72-409 (638)
339 2zwa_A Leucine carboxyl methyl 95.6 0.32 1.1E-05 57.8 19.3 192 28-220 397-639 (695)
340 3s25_A Hypothetical 7-bladed b 95.4 3.2 0.00011 43.8 24.6 216 69-307 23-264 (302)
341 2zwa_A Leucine carboxyl methyl 95.3 0.29 9.8E-06 58.2 17.3 191 69-260 396-638 (695)
342 2g8s_A Glucose/sorbosone dehyd 95.0 4 0.00014 43.8 24.2 141 61-202 19-214 (353)
343 3das_A Putative oxidoreductase 94.6 6 0.0002 42.6 27.4 144 58-203 30-219 (347)
344 1cru_A Protein (soluble quinop 94.6 2 6.9E-05 48.1 20.8 115 5-120 15-162 (454)
345 1cru_A Protein (soluble quinop 94.5 2 6.7E-05 48.2 20.6 104 60-163 27-163 (454)
346 1tl2_A L10, protein (tachylect 94.3 2 6.9E-05 43.4 17.6 170 29-208 4-202 (236)
347 1xi4_A Clathrin heavy chain; a 94.2 0.95 3.3E-05 57.1 18.1 193 28-225 76-298 (1630)
348 1tl2_A L10, protein (tachylect 93.8 0.39 1.3E-05 48.6 11.2 140 18-167 42-203 (236)
349 3qhy_B Beta-lactamase inhibito 92.6 1.4 4.9E-05 45.9 14.1 221 61-297 25-245 (282)
350 3qhy_B Beta-lactamase inhibito 90.9 3.7 0.00013 42.7 15.1 221 18-256 25-245 (282)
351 3b7f_A Glycosyl hydrolase, BNR 90.2 22 0.00076 38.2 25.2 183 16-203 54-296 (394)
352 2wg3_C Hedgehog-interacting pr 89.9 28 0.00097 38.8 32.3 247 6-256 3-370 (463)
353 3q6k_A 43.2 kDa salivary prote 89.7 26 0.00088 38.1 23.2 181 40-245 124-341 (381)
354 3b7f_A Glycosyl hydrolase, BNR 86.8 37 0.0013 36.4 24.5 210 29-245 22-296 (394)
355 3q6k_A 43.2 kDa salivary prote 80.3 68 0.0023 34.7 18.4 134 165-298 123-306 (381)
356 3uc1_A DNA gyrase subunit A; D 80.3 64 0.0022 34.1 20.2 195 18-216 43-279 (327)
357 3uc1_A DNA gyrase subunit A; D 80.0 49 0.0017 35.0 16.9 157 16-173 94-278 (327)
358 3no0_A DNA gyrase subunit A; D 79.9 58 0.002 33.5 20.4 199 11-216 15-246 (276)
359 2wg3_C Hedgehog-interacting pr 76.5 99 0.0034 34.3 27.0 104 61-164 15-159 (463)
360 1suu_A DNA gyrase subunit A; t 75.5 83 0.0028 32.9 25.2 185 28-216 7-231 (312)
361 4hvt_A Ritya.17583.B, post-pro 70.6 1.7E+02 0.0058 34.4 22.5 220 21-244 133-412 (711)
362 1sqj_A OXG-RCBH, oligoxylogluc 67.2 2.1E+02 0.007 34.0 26.4 147 16-164 14-190 (789)
363 3no0_A DNA gyrase subunit A; D 64.4 1.3E+02 0.0045 30.7 18.2 154 16-173 67-245 (276)
364 4gq2_M Nucleoporin NUP120; bet 63.9 1.5E+02 0.0051 36.2 18.0 38 61-98 237-274 (950)
365 1zi0_A DNA gyrase subunit A; b 62.5 1.5E+02 0.0051 30.8 23.5 185 28-216 2-226 (307)
366 1zi0_A DNA gyrase subunit A; b 61.9 1.5E+02 0.0052 30.7 22.4 185 29-216 53-277 (307)
367 1suu_A DNA gyrase subunit A; t 60.9 1.6E+02 0.0055 30.6 24.1 185 69-257 6-231 (312)
368 3l6v_A GYRA, DNA gyrase subuni 59.3 1.9E+02 0.0066 31.0 24.3 143 28-173 6-179 (370)
369 4fhn_B Nucleoporin NUP120; pro 58.5 3E+02 0.01 34.2 19.7 37 146-182 240-276 (1139)
370 3kci_A Probable E3 ubiquitin-p 56.8 2E+02 0.007 30.5 28.6 182 30-215 11-240 (389)
371 1wp5_A Topoisomerase IV; broke 55.4 2E+02 0.007 30.1 21.5 186 69-257 3-225 (323)
372 3zwu_A Alkaline phosphatase PH 50.4 1.7E+02 0.0057 33.7 14.2 59 61-119 477-548 (592)
373 4a9v_A PHOX; hydrolase, beta-p 48.7 1.9E+02 0.0064 33.2 14.0 61 60-120 476-549 (592)
374 4gq2_M Nucleoporin NUP120; bet 48.7 4.4E+02 0.015 32.0 23.1 38 145-182 237-274 (950)
375 4fhn_B Nucleoporin NUP120; pro 43.0 1.8E+02 0.0061 36.2 14.1 36 188-223 240-275 (1139)
376 3l6v_A GYRA, DNA gyrase subuni 42.0 3.5E+02 0.012 28.9 25.7 145 68-215 4-179 (370)
377 1x5b_A Signal transducing adap 41.2 33 0.0011 32.5 5.5 65 694-763 29-93 (163)
378 1juq_A ADP-ribosylation factor 39.5 46 0.0016 31.8 6.2 79 680-763 9-91 (171)
379 3f7f_A Nucleoporin NUP120; nuc 36.5 1.2E+02 0.0042 35.6 10.2 36 146-183 224-259 (729)
380 4hvt_A Ritya.17583.B, post-pro 36.3 5.8E+02 0.02 29.8 24.9 192 62-258 131-382 (711)
381 1wp5_A Topoisomerase IV; broke 33.2 4.4E+02 0.015 27.4 23.6 196 18-216 40-277 (323)
382 3ldz_A STAM-1, signal transduc 32.6 28 0.00096 32.1 3.3 68 691-763 16-83 (140)
383 1mhq_A ADP-ribosylation factor 31.4 33 0.0011 31.9 3.6 67 692-763 13-79 (148)
384 3zwu_A Alkaline phosphatase PH 29.8 1.1E+02 0.0036 35.3 8.2 59 188-246 478-549 (592)
385 4a9v_A PHOX; hydrolase, beta-p 28.9 1.5E+02 0.0052 33.9 9.1 60 187-246 477-549 (592)
386 1dvp_A HRS, hepatocyte growth 27.9 42 0.0014 33.3 3.9 67 692-763 17-83 (220)
387 1l9l_A Granulysin; saposin fol 27.7 38 0.0013 27.6 2.9 46 718-763 5-62 (74)
388 3g2s_A C-terminal fragment of 25.5 44 0.0015 31.2 3.3 65 694-763 25-89 (149)
389 1zvt_A Topoisomerase IV subuni 24.9 3.3E+02 0.011 27.3 10.2 141 73-216 4-163 (256)
390 1zvt_A Topoisomerase IV subuni 22.7 5.8E+02 0.02 25.4 11.8 142 30-174 3-163 (256)
391 3rru_A TOM1L1 protein; structu 22.3 49 0.0017 31.0 2.9 66 693-763 29-95 (152)
392 2zux_A YESW protein; beta-prop 22.1 9.1E+02 0.031 27.5 26.8 230 15-259 177-481 (591)
393 3f7f_A Nucleoporin NUP120; nuc 22.0 1.2E+02 0.004 35.7 6.7 37 61-99 223-259 (729)
394 3kci_A Probable E3 ubiquitin-p 21.7 7.1E+02 0.024 26.1 29.7 190 19-215 55-292 (389)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-41 Score=381.74 Aligned_cols=287 Identities=27% Similarity=0.502 Sum_probs=272.2
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
...+.+|.+.|++++|+| ++.+|++|+.||+|++||+.+++....+.+|...|.+++|+|++++|++|+.||+|++||+
T Consensus 101 ~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp SCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred eEeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 346789999999999999 6678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (818)
Q Consensus 89 ~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~ 168 (818)
.+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++++.++..+.+|...|.++.|+|+|.+|++|+.||.|+
T Consensus 180 ~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 180 QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR 259 (410)
T ss_dssp TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCCCCEEEEEEeCC--------------------CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC
Q 003459 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPH--------------------EFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (818)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sv~fspd--------------------g~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~ 228 (818)
+||+++++....+..|...|.+++|+|+ +.+|++|+.|+.|++||+++++++..+.+|..
T Consensus 260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence 9999999999999999999999999996 67899999999999999999999999999999
Q ss_pred CeeEEEEeCCCCEEEEEECCC-EEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEe
Q 003459 229 GVRCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdv 296 (818)
.|++++|+|+|++|++|+.++ |++||+...++...+..+...+..+.+ +++.+|++|+.||.|++|++
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999998775 999999999988888888888888876 67899999999999999986
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.6e-41 Score=364.22 Aligned_cols=292 Identities=23% Similarity=0.407 Sum_probs=268.9
Q ss_pred ceeEEEEecCCCCEEEEEEeeC---CCcEEEEEeCCCeEEEEECCCCce--EEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRK---SSRVLVTGGEDHKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~---~~~lLatgs~Dg~V~lWdl~~~~~--i~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (818)
...++.+.+|.+.|++++|+|+ ++.+|++|+.|++|++|++..++. ...+.+|...|.+++|++++.++++++.|
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 3444667899999999999984 356899999999999999976653 45688999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~s 160 (818)
++|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||+++++....+..|...|.+++|+|+|++|++
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003459 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (818)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~ 240 (818)
|+.||.|++||+++++.+..+.+|...|.+++|+|++.+|++|+.||+|++||+++++.+..+.+|...|.+++|+|+|.
T Consensus 182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 261 (321)
T 3ow8_A 182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDT 261 (321)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS
T ss_pred EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEec
Q 003459 241 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd 297 (818)
+|++++.+ .++|||+.+.++...+..+...+..+.+ +++++|++++.||.|++||+.
T Consensus 262 ~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 262 HFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred EEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 99998877 5999999999998888777777777775 688999999999999999963
No 3
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=3.9e-40 Score=358.02 Aligned_cols=297 Identities=23% Similarity=0.439 Sum_probs=261.9
Q ss_pred CCcccce-eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-----CceEEEecCCCCCeEEEEEcCCCCEE
Q 003459 1 MTTKRAY-KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-----PNAILSLSGHTSGIDSVSFDSSEVLV 74 (818)
Q Consensus 1 m~t~r~~-kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~-----~~~i~~l~~h~~~V~~l~fspdg~~L 74 (818)
|..++.. ...++.+|.+.|++++|+|+++++|++|+.|++|++|++.. +..+..+.+|...|.+++|++++.+|
T Consensus 1 ~~~~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l 80 (319)
T 3frx_A 1 MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA 80 (319)
T ss_dssp ---CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CCcceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEE
Confidence 3333433 34589999999999999997778999999999999999853 34567889999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC
Q 003459 75 AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154 (818)
Q Consensus 75 asgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd 154 (818)
++|+.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++ +.++..+.+|...|.+++|+|.
T Consensus 81 ~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~ 159 (319)
T 3frx_A 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPN 159 (319)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC
T ss_pred EEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccC
Confidence 999999999999999999999999999999999999999999999999999999996 5678888999999999999984
Q ss_pred ------CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC
Q 003459 155 ------GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (818)
Q Consensus 155 ------g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~ 228 (818)
+..|++++.|+.|++||+++++....+.+|...|.+++|+|++.+|++|+.||.|++||+.+++.+..+..+ .
T Consensus 160 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~ 238 (319)
T 3frx_A 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-D 238 (319)
T ss_dssp ------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-S
T ss_pred CCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-C
Confidence 458999999999999999999999999999999999999999999999999999999999999998888754 6
Q ss_pred CeeEEEEeCCCCEEEEEECCCEEEEEecCCceecccccc--------ccceeeee-ecCCCEEEEEEcCCeEEEEEecCC
Q 003459 229 GVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG--------WSRLSDLN-VHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~--------~~~v~~l~-~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
.|.+++|+|++.+|+++.++++++|+++.......+... ...+..+. .++|++|++|+.||.|++|++.++
T Consensus 239 ~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 799999999999999999999999999987654433221 22233444 489999999999999999999865
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.4e-39 Score=356.66 Aligned_cols=287 Identities=25% Similarity=0.424 Sum_probs=265.3
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
.....+.+|.+.|++++|+| ++++|++|+.||+|++||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++|
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~-d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw 124 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGT-DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEE
T ss_pred hhheeecCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 34568999999999999999 67899999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC----eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003459 87 DLEEA----KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 87 Dl~t~----~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs 162 (818)
|+.++ .....+.+|...|.++.|++++ .+++++.|+.|++||+.+++++..+.+|...|.+++|+|++++|++|+
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~ 203 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEe
Confidence 99865 4667788999999999999876 588999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC--CCCeeEEEEeCCCC
Q 003459 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGR 240 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~--~~~I~sl~fspdg~ 240 (818)
.||.|++||+++++.+..+.+|...|++++|+|++.+|++|+.||+|++||+++++.+..+..+ ...|.+++|+|+|+
T Consensus 204 ~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~ 283 (340)
T 1got_B 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGR 283 (340)
T ss_dssp TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCC
Confidence 9999999999999999999999999999999999999999999999999999999888776533 35799999999999
Q ss_pred EEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 241 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
+|++|+.+ .+++||+...+....+..+...+.++.+ ++|++|++|+.|+.|+||+
T Consensus 284 ~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 284 LLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 99999887 4999999998888888878888888876 7889999999999999996
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.5e-39 Score=346.22 Aligned_cols=290 Identities=21% Similarity=0.355 Sum_probs=260.1
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
...+.|.+|.+.|++++|+| ++.+|++|+.||.|++||+.++..+..+..|..+|.+++|++++++|++|+.|++|++|
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp-~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF 82 (304)
T ss_dssp CCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred eeEEeecCCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence 34567999999999999999 67789999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEECC
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGED 164 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~D 164 (818)
|+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++||++++ .....+.+|...|.+++|+| ++.+|++|+.|
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D 162 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD 162 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999877 55677889999999999999 67899999999
Q ss_pred CeEEEEECCCCeEEEEEe-cCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCE
Q 003459 165 NTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRT 241 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~~-~h~~~I~sv~fsp--dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~ 241 (818)
+.|++||++++.....+. .|...+..+.|+| ++.+|++|+.|++|++||+++++++..+.+|...|.+++|+|++.+
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 999999998877665554 4667899999987 6789999999999999999999999999999999999999999999
Q ss_pred EEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCC--EEEEEEcCCeEEEEEecC
Q 003459 242 LLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGK--LLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 242 Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~--lLatg~~Dg~V~IWdvd~ 298 (818)
|++|+.| .|++||..+.++...+..+...+.++.+ +++. ++++|+.| .+.+|++..
T Consensus 243 l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETT-EEEEEECC-
T ss_pred EEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCC-ceEEEEecc
Confidence 9999877 5999999999998888877777777774 5553 46666655 577777654
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.2e-38 Score=349.72 Aligned_cols=288 Identities=20% Similarity=0.364 Sum_probs=263.7
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
.....+.+|.+.|+|++|+| ++++|++|+.||+|++||..+++....+..|...|.+++|+|++.+|++|+.|+.+++|
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~-d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCK-DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVY 133 (354)
T ss_dssp CEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEE
Confidence 35678999999999999999 66789999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCC------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC--CCCEE
Q 003459 87 DLEEA------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP--DGRWV 158 (818)
Q Consensus 87 Dl~t~------~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp--dg~~L 158 (818)
++... .....+.+|...|.+++|+|++.+|++++.|++|++||+++++++..+.+|...|.+++|+| +|++|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l 213 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF 213 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence 98643 23456678999999999999999999999999999999999999999999999999999987 57899
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC--CCCeeEEEEe
Q 003459 159 VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE--TSGVRCLTFN 236 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~--~~~I~sl~fs 236 (818)
++|+.||.|++||+++++.+..+..|...|++++|+|++.+|++|+.|++|++||++.++.+..+..+ ...+.+++|+
T Consensus 214 ~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s 293 (354)
T 2pbi_B 214 VSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFS 293 (354)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999998887776543 3478999999
Q ss_pred CCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 237 PDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
|+|.+|++|+.+ .+++||+..+.....+..+...+..+.+ ++|++|++|+.|+.|+||+
T Consensus 294 ~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 294 LSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999877 6999999988888777777778888776 7899999999999999995
No 7
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-38 Score=346.98 Aligned_cols=290 Identities=22% Similarity=0.399 Sum_probs=248.7
Q ss_pred eeEEEEecCCCCEEEEEE-----eeCCCcEEEEEeCCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCCCEE
Q 003459 7 YKLQEFVAHSSTVNCLKI-----GRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSEVLV 74 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~laf-----sp~~~~lLatgs~Dg~V~lWdl~~~-------~~i~~l~~h~~~V~~l~fspdg~~L 74 (818)
.....+.+|.+.|++++| ++.++.+|++|+.|++|++||+.+. .....+.+|...|.+++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456689999999999999 6656789999999999999998643 4567789999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe---cCCCCeEEEEE
Q 003459 75 AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK---GHTRGVNAIRF 151 (818)
Q Consensus 75 asgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~---~h~~~V~~l~f 151 (818)
++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+... ...... .|...|.+++|
T Consensus 92 ~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999843 344433 68889999999
Q ss_pred cCCC----------CEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeEE
Q 003459 152 TPDG----------RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET-FELI 220 (818)
Q Consensus 152 spdg----------~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t-~~~i 220 (818)
+|++ .+|++++.||.|++|| ..++....+..|...|.+++|+|+|.+|++|+.||.|++||+.. ....
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~ 249 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCS
T ss_pred ccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 9987 7999999999999999 45677888889999999999999999999999999999999954 3333
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceec--ccc-----------ccccceeeeee-cCCCEEEEEE
Q 003459 221 GSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHD--AVD-----------VGWSRLSDLNV-HEGKLLGCSY 286 (818)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~--~~~-----------~~~~~v~~l~~-~~g~lLatg~ 286 (818)
..+ .+...|.+++|+|++.+++++.++++++|++.+.+... .+. .+...+..+.+ ++|++|++|+
T Consensus 250 ~~~-~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 250 REF-DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp EEE-ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred eee-cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 333 23456999999999999999999999999998765543 221 22334555555 7899999999
Q ss_pred cCCeEEEEEecCC
Q 003459 287 NQSCVGVWVVDIS 299 (818)
Q Consensus 287 ~Dg~V~IWdvd~~ 299 (818)
.||.|++|+++++
T Consensus 329 ~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 329 TDGVIRTFSFETS 341 (343)
T ss_dssp TTSEEEEEEEEEE
T ss_pred CCceEEEEEEEcc
Confidence 9999999998764
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.1e-37 Score=333.20 Aligned_cols=289 Identities=21% Similarity=0.461 Sum_probs=262.4
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
....+.+|.+.|++++|+| ++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++|+.||.|++||
T Consensus 15 ~~~~~~gh~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEEcccCCcEEEEEECC-CCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 3457899999999999999 677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I 167 (818)
+.+++.+..+.+|...|.+++|+|++.+|++|+.||.|++||+++++++..+..|...|.+++|+|++++|++++.||.|
T Consensus 94 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 173 (312)
T 4ery_A 94 VSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173 (312)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEe-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeE--EEE-eCCCCEEE
Q 003459 168 KLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC--LTF-NPDGRTLL 243 (818)
Q Consensus 168 ~IwDl~t~~~i~~~~-~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~s--l~f-spdg~~La 243 (818)
++||+++++.+..+. .+...+.+++|+|++.+|++++.||.|++||+++++.+..+..|...+.+ ..| .+++.+|+
T Consensus 174 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 253 (312)
T ss_dssp EEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEE
T ss_pred EEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEE
Confidence 999999998887765 45678999999999999999999999999999999999998877654332 233 46788999
Q ss_pred EEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEE--cCCeEEEEEec
Q 003459 244 CGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSY--NQSCVGVWVVD 297 (818)
Q Consensus 244 sgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~--~Dg~V~IWdvd 297 (818)
+|+.+ .|++|++...+....+..+...+..+.+ +++.+|++++ .|+.|++|+.+
T Consensus 254 sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 254 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp ECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 98776 5999999999888888777777777765 6789999887 69999999876
No 9
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=341.81 Aligned_cols=296 Identities=20% Similarity=0.344 Sum_probs=251.4
Q ss_pred cceeEEEEecCCC-CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE---EecCCCCCeEEEEEcCCCCEEEEEECC
Q 003459 5 RAYKLQEFVAHSS-TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL---SLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 5 r~~kl~~~~~H~~-~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~---~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (818)
....+..+.+|.. .|++++|+| ++.+|++|+.|++|+|||+.++.... ...+|...|.+++|+|++++|++|+.|
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp-~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D 82 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNP-AGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECT-TSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred cEEEeeeecCCCCCcEEEEEECC-CCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence 4456788999998 999999999 67789999999999999998775432 236899999999999999999999999
Q ss_pred CeEEEEECCCC--eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC---eEEEEEecCCCCeEEEEEcCCC
Q 003459 81 GTIKLWDLEEA--KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK---GCIHTYKGHTRGVNAIRFTPDG 155 (818)
Q Consensus 81 G~I~IWDl~t~--~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~---~~i~~l~~h~~~V~~l~fspdg 155 (818)
++|++||+..+ +.+..+.+|...|.+++|+|++++|++|+.|+.|++||++.+ .++..+.+|...|.+++|+|++
T Consensus 83 ~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 162 (345)
T 3fm0_A 83 ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ 162 (345)
T ss_dssp SCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS
T ss_pred CcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC
Confidence 99999999876 467889999999999999999999999999999999999875 4567788999999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCe--EEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---------------Ce
Q 003459 156 RWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET---------------FE 218 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t---------------~~ 218 (818)
++|++++.|+.|++||.+.+. ....+.+|...|++++|+|++.+|++|+.|++|++||... ++
T Consensus 163 ~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~ 242 (345)
T 3fm0_A 163 ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWK 242 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEE
T ss_pred CEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccc
Confidence 999999999999999998875 4567888999999999999999999999999999999632 23
Q ss_pred EEEEeCC-CCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCcee---------ccccccccceeeeee-cCC-CEEEEE
Q 003459 219 LIGSAGP-ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCH---------DAVDVGWSRLSDLNV-HEG-KLLGCS 285 (818)
Q Consensus 219 ~i~~~~~-~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~---------~~~~~~~~~v~~l~~-~~g-~lLatg 285 (818)
++..+.. |...|.+++|++++..|++++.+ .+++|+++..... .....+...+.++.+ +++ .+|++|
T Consensus 243 ~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~ 322 (345)
T 3fm0_A 243 CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322 (345)
T ss_dssp EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEE
T ss_pred eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEc
Confidence 4444544 78899999999999999988766 6999999865321 112345566777776 455 599999
Q ss_pred EcCCeEEEEEecCCCc
Q 003459 286 YNQSCVGVWVVDISRI 301 (818)
Q Consensus 286 ~~Dg~V~IWdvd~~~~ 301 (818)
+.||.|++|++...+.
T Consensus 323 s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 323 SDDGEVAFWKYQRPEG 338 (345)
T ss_dssp ETTSCEEEEEECC---
T ss_pred CCCCcEEEEEecCCCC
Confidence 9999999999988763
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7.8e-39 Score=356.33 Aligned_cols=295 Identities=23% Similarity=0.376 Sum_probs=261.2
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
.....+.+.+|.+.|++++|+| ++.+|++|+.||+|+|||+.+++....+.+|...|.+++|+|++++|++|+.|+.|+
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp-~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~ 133 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTP-EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACS 133 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCE
T ss_pred eeEEeecccccccEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEE
Confidence 3456678999999999999999 667899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCe-------EEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEE-----ecCCCCeEEEEE
Q 003459 85 LWDLEEAK-------IVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTY-----KGHTRGVNAIRF 151 (818)
Q Consensus 85 IWDl~t~~-------~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l-----~~h~~~V~~l~f 151 (818)
+||+.+.. ....+.+|...+.++.|.|++ ..|++|+.|++|++||+.+++.+..+ .+|...|.+++|
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred EEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence 99987532 345678899999999999975 47999999999999999999998887 578999999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECC-CCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCC--
Q 003459 152 TP-DGRWVVSGGEDNTVKLWDLT-AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET-- 227 (818)
Q Consensus 152 sp-dg~~L~sgs~Dg~I~IwDl~-t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~-- 227 (818)
++ ++++|++|+.||.|++||++ .++.+..+.+|.+.|++++|+|++.+|++|+.||+|++||+++++.+..+..+.
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~ 293 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR 293 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS
T ss_pred ecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc
Confidence 87 88999999999999999998 457788899999999999999999999999999999999999999888775542
Q ss_pred -----CCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccc----cccccceeeeee-cCCCEEEEEEcCCeEEEEEe
Q 003459 228 -----SGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV----DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 228 -----~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~----~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdv 296 (818)
..|.+++|+|+|++|++|+.+ .+++||....+....+ ..+...+.++.+ ++|++|++|+.|+.|+||++
T Consensus 294 ~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 294 NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 248999999999999999766 5999999887765544 445566777765 78999999999999999998
Q ss_pred cCCC
Q 003459 297 DISR 300 (818)
Q Consensus 297 d~~~ 300 (818)
...+
T Consensus 374 ~~~~ 377 (380)
T 3iz6_a 374 SGHR 377 (380)
T ss_dssp CSSS
T ss_pred CCCc
Confidence 7654
No 11
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5.5e-37 Score=342.96 Aligned_cols=287 Identities=24% Similarity=0.442 Sum_probs=253.4
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC------------------CeEEEEEcCCC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS------------------GIDSVSFDSSE 71 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~------------------~V~~l~fspdg 71 (818)
....+|.+.|+|++|+| ++++|++|+ ++.+++|++.+++.+..+..|.. .|.+++|+|++
T Consensus 58 ~~~~~h~~~V~~v~fsp-dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg 135 (393)
T 1erj_A 58 HKSLDHTSVVCCVKFSN-DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 135 (393)
T ss_dssp EEEEECSSCCCEEEECT-TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred EEecCCCCEEEEEEECC-CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCC
Confidence 33447999999999999 567888876 68999999999998888876542 39999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEE
Q 003459 72 VLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRF 151 (818)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~f 151 (818)
++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||++++++...+. +...+.+++|
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~ 214 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAV 214 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999888876 5667999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCeEEEEE-------ecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------
Q 003459 152 TP-DGRWVVSGGEDNTVKLWDLTAGKLLHDF-------KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF------ 217 (818)
Q Consensus 152 sp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~-------~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~------ 217 (818)
+| ++++|++|+.||.|++||+++++.+..+ .+|...|.+++|+|++.+|++|+.||.|++||+++.
T Consensus 215 ~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~ 294 (393)
T 1erj_A 215 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 294 (393)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccc
Confidence 99 8999999999999999999999888776 468899999999999999999999999999999763
Q ss_pred ------eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeeec-------CCCEEE
Q 003459 218 ------ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVH-------EGKLLG 283 (818)
Q Consensus 218 ------~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~-------~g~lLa 283 (818)
.+...+.+|...|.+++|++++.+|++|+.+ .+++||...++....+..+...+..+.+. ++.+|+
T Consensus 295 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~ 374 (393)
T 1erj_A 295 KTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 374 (393)
T ss_dssp ------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEE
T ss_pred cCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEE
Confidence 3455677899999999999999999999877 49999999998888887777777777653 578999
Q ss_pred EEEcCCeEEEEEecCC
Q 003459 284 CSYNQSCVGVWVVDIS 299 (818)
Q Consensus 284 tg~~Dg~V~IWdvd~~ 299 (818)
+|+.||+|+||++...
T Consensus 375 sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 375 TGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEETTSEEEEEEEEEC
T ss_pred EECCCCcEEECccccc
Confidence 9999999999998643
No 12
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-37 Score=333.97 Aligned_cols=289 Identities=20% Similarity=0.336 Sum_probs=236.7
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEe-cC-CCCCeEEEEEcCCCCEEEEEECCC
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSL-SG-HTSGIDSVSFDSSEVLVAAGAASG 81 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~--~~i~~l-~~-h~~~V~~l~fspdg~~Lasgs~DG 81 (818)
...++.+.+|.+.|++++|+|+ +|++|+.|++|++||+..+ ..+..+ .+ |...|.+++|+|++.+|++|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 3467789999999999999983 8999999999999999764 445555 44 999999999999999999999999
Q ss_pred eEEEEECC-------CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC----CeEEEEEecCCCCeEEEE
Q 003459 82 TIKLWDLE-------EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK----KGCIHTYKGHTRGVNAIR 150 (818)
Q Consensus 82 ~I~IWDl~-------t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~----~~~i~~l~~h~~~V~~l~ 150 (818)
+|++||+. ..+.+..+.+|...|.+++|+|++++|++|+.|+.|++||++. .+++..+.+|...|.+++
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 99999985 3456788899999999999999999999999999999999943 357788899999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCC--eEEEEEecCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCC--------e
Q 003459 151 FTPDGRWVVSGGEDNTVKLWDLTAG--KLLHDFKCHEGQIQCIDFHPH--EFLLATGSADRTVKFWDLETF--------E 218 (818)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h~~~I~sv~fspd--g~~Lasgs~Dg~I~IwDl~t~--------~ 218 (818)
|+|++.+|++++.|+.|++||..++ +++..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+..+ .
T Consensus 161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 240 (330)
T 2hes_X 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV 240 (330)
T ss_dssp ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence 9999999999999999999999876 678888999999999999998 779999999999999998754 3
Q ss_pred EEEEeCC-CCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCce--ecc-cccccc-ceeeeee-c--CCCEEEEEEcCC
Q 003459 219 LIGSAGP-ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC--HDA-VDVGWS-RLSDLNV-H--EGKLLGCSYNQS 289 (818)
Q Consensus 219 ~i~~~~~-~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~--~~~-~~~~~~-~v~~l~~-~--~g~lLatg~~Dg 289 (818)
....+.. |...|.+++|++++ +|++++.+ .++||+...+.. ... ...+.. .+..+.+ + ++++|++|+.||
T Consensus 241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence 4455544 88899999999776 55655544 699999987632 211 122332 4666655 3 588999999999
Q ss_pred eEEEEEecC
Q 003459 290 CVGVWVVDI 298 (818)
Q Consensus 290 ~V~IWdvd~ 298 (818)
.|++|+++.
T Consensus 320 ~v~~W~~~~ 328 (330)
T 2hes_X 320 IVNFWSLEK 328 (330)
T ss_dssp EEEEEEC--
T ss_pred cEEEEEecc
Confidence 999999864
No 13
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2e-36 Score=326.83 Aligned_cols=294 Identities=24% Similarity=0.405 Sum_probs=258.9
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-----eEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----AILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~-----~i~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (818)
.....+|+||.+.|++|+|+|+++++|++|+.||+|+|||+.+.+ ....+.+|...|.+++|+|++++|++|+.|
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d 107 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD 107 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccc
Confidence 344457999999999999999778999999999999999986543 567788999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE-EEEecCCCCeEEEEEcCCC--CE
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-HTYKGHTRGVNAIRFTPDG--RW 157 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i-~~l~~h~~~V~~l~fspdg--~~ 157 (818)
|.|++|+............+...+..+.+++++.+|++|+.|+.+++||+...... ....+|...+.+++|++++ .+
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 187 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence 99999999999999998889999999999999999999999999999999866543 3456789999999998854 57
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003459 158 VVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fsp 237 (818)
+++++.|+.|++||+++++.+..+.+|.+.|++++|+|++.+|++|+.||.|++||+++++.+..+..+ ..+.++.|+|
T Consensus 188 ~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~ 266 (340)
T 4aow_A 188 IVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSP 266 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS-SCEEEEEECS
T ss_pred EEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC-ceEEeeecCC
Confidence 889999999999999999999999999999999999999999999999999999999999999888654 6799999999
Q ss_pred CCCEEEEEECCCEEEEEecCCceeccc---------cccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 238 DGRTLLCGLHESLKVFSWEPIRCHDAV---------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 238 dg~~Lasgs~d~I~Vwd~~~~~~~~~~---------~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
++.+++++.++.|++|+++.......+ ..+...+..+.+ ++|++|++|+.||.|+||++.++.
T Consensus 267 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 267 NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 999998888889999999877655433 234445666654 789999999999999999999874
No 14
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-36 Score=324.74 Aligned_cols=293 Identities=18% Similarity=0.309 Sum_probs=267.4
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
..+...+.+|.+.|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred ccccEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 456778999999999999999 6778999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC-----CcEEEEECCCCe-----------EEEEEecCCC--CeE
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKG-----------CIHTYKGHTR--GVN 147 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D-----g~I~IwDl~~~~-----------~i~~l~~h~~--~V~ 147 (818)
||+.+++.+..+. +...+.+++|+|++.+|++++.+ |.|++||+.... .+..+..|.. .+.
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred EECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 9999999999988 88999999999999999999999 999999987553 3444556666 899
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC
Q 003459 148 AIRFTPDGRWVVSGGEDNTVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (818)
Q Consensus 148 ~l~fspdg~~L~sgs~Dg~I~IwDl~t-~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~ 226 (818)
+++|+|++++|++++.||.|++||+++ ++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+. +
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~ 258 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-T 258 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-C
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-C
Confidence 999999999999999999999999998 78899999999999999999999999999999999999999999988887 6
Q ss_pred CCCeeEEEEeCCCCEEEEEECC---------------CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCe
Q 003459 227 TSGVRCLTFNPDGRTLLCGLHE---------------SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSC 290 (818)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~d---------------~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~ 290 (818)
...+.+++|+|+++++++++.+ .+++|+....+....+..+...+..+.+ +++++|++++.||.
T Consensus 259 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 338 (369)
T 3zwl_B 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF 338 (369)
T ss_dssp SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCe
Confidence 6889999999999999988765 4899999998888888777777887776 68999999999999
Q ss_pred EEEEEecCCCc
Q 003459 291 VGVWVVDISRI 301 (818)
Q Consensus 291 V~IWdvd~~~~ 301 (818)
|++|+++.+..
T Consensus 339 v~iw~~~~~~~ 349 (369)
T 3zwl_B 339 IRLHHFEKSYF 349 (369)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEECccccc
Confidence 99999987654
No 15
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.2e-36 Score=360.61 Aligned_cols=288 Identities=26% Similarity=0.446 Sum_probs=254.8
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-----ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-----NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~-----~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (818)
...+.+|.+.|+|++|+|+++.+|++|+.||+|++|++.+. .....+.+|...|.+++|+|++++|++|+.||+|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 34689999999999999988889999999999999998653 4566788999999999999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCC--CEE
Q 003459 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAIRFTPDG--RWV 158 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l---~~h~~~V~~l~fspdg--~~L 158 (818)
++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||+......... .+|...|.+++|+|++ ..|
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l 534 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTI 534 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEE
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceE
Confidence 99999999999999999999999999999999999999999999998755433332 3688899999999986 689
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCC
Q 003459 159 VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD 238 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspd 238 (818)
++++.|+.|++||+++++....+.+|.+.|++++|+|++.+|++|+.||.|++||+.+++.+..+.. ...|.+++|+|+
T Consensus 535 ~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~ 613 (694)
T 3dm0_A 535 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPN 613 (694)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSS
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999887765 467999999999
Q ss_pred CCEEEEEECCCEEEEEecCCceecccccccc-------------------ceeeee-ecCCCEEEEEEcCCeEEEEEec
Q 003459 239 GRTLLCGLHESLKVFSWEPIRCHDAVDVGWS-------------------RLSDLN-VHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 239 g~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~-------------------~v~~l~-~~~g~lLatg~~Dg~V~IWdvd 297 (818)
+.+|+++.+++|+|||++.......+..... .+..+. .++|++|++|+.||.|+||++.
T Consensus 614 ~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 614 RYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp SSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999998876554432111 133444 4799999999999999999975
No 16
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.8e-37 Score=337.43 Aligned_cols=296 Identities=17% Similarity=0.233 Sum_probs=260.5
Q ss_pred CCcccceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc------eEEEecCCCCCeEEEEEcCC----
Q 003459 1 MTTKRAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN------AILSLSGHTSGIDSVSFDSS---- 70 (818)
Q Consensus 1 m~t~r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~------~i~~l~~h~~~V~~l~fspd---- 70 (818)
|..+.......+.+|.+.|++++|+| .+|++|+.||.|++|++.+++ .+..+.+|...|.+++|+++
T Consensus 1 m~~~~~~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 1 MSKVFIATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERD 77 (397)
T ss_dssp --CEEEEEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred CchhhhhhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccC
Confidence 34334445567789999999999987 689999999999999998887 78889999999999999999
Q ss_pred C---CEEEEEECCCeEEEEECCCCeE-----EEEEcCC-----CCCeEEEEEe----CCCCE-EEEEECCCcEEEEECCC
Q 003459 71 E---VLVAAGAASGTIKLWDLEEAKI-----VRTLTGH-----RSNCISVDFH----PFGEF-FASGSLDTNLKIWDIRK 132 (818)
Q Consensus 71 g---~~Lasgs~DG~I~IWDl~t~~~-----v~~l~~h-----~~~V~sv~fs----pdg~~-Lasgs~Dg~I~IwDl~~ 132 (818)
+ .+|++++.||.|++||+.+++. +..+..| ...|.+++|+ |++.+ |++++.||.|++||+++
T Consensus 78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 78 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 9 9999999999999999998876 8888888 5899999999 99999 99999999999999988
Q ss_pred ------CeEEE-----EE-------ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec---C---CCCE
Q 003459 133 ------KGCIH-----TY-------KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC---H---EGQI 188 (818)
Q Consensus 133 ------~~~i~-----~l-------~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~---h---~~~I 188 (818)
++.+. .+ ..|...|.+++|+|++ +|++++.||.|++||+++++.+..+.. | ...|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i 236 (397)
T 1sq9_A 158 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 236 (397)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred cccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCcc
Confidence 66555 66 3488999999999999 999999999999999999999999998 8 9999
Q ss_pred EEEEEeCCCCEEEEEeCC---CeEEEEECCCCeEEEEeCC-------------CCCCeeEEEEeCCCCEEEEEECC-CEE
Q 003459 189 QCIDFHPHEFLLATGSAD---RTVKFWDLETFELIGSAGP-------------ETSGVRCLTFNPDGRTLLCGLHE-SLK 251 (818)
Q Consensus 189 ~sv~fspdg~~Lasgs~D---g~I~IwDl~t~~~i~~~~~-------------~~~~I~sl~fspdg~~Lasgs~d-~I~ 251 (818)
.+++|+|++.+|++++.| |.|++||+++++.+..+.. |...|.+++|+|++++|++++.+ .++
T Consensus 237 ~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 316 (397)
T 1sq9_A 237 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLR 316 (397)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred ceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEE
Confidence 999999999999999999 9999999999999999988 89999999999999999999876 499
Q ss_pred EEEecCCceecccc------cc---------------ccceeeeee-cCC----------CEEEEEEcCCeEEEEEecCC
Q 003459 252 VFSWEPIRCHDAVD------VG---------------WSRLSDLNV-HEG----------KLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 252 Vwd~~~~~~~~~~~------~~---------------~~~v~~l~~-~~g----------~lLatg~~Dg~V~IWdvd~~ 299 (818)
+|++...++...+. .+ ...+..+.+ +++ ++|++++.||.|++|+++.+
T Consensus 317 iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 317 FWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 99999988877776 44 566777776 555 79999999999999999876
Q ss_pred C
Q 003459 300 R 300 (818)
Q Consensus 300 ~ 300 (818)
+
T Consensus 397 ~ 397 (397)
T 1sq9_A 397 K 397 (397)
T ss_dssp -
T ss_pred C
Confidence 3
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.4e-36 Score=356.52 Aligned_cols=290 Identities=17% Similarity=0.305 Sum_probs=250.3
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
..+.+|...|++++|+|++..+|++|+.|++|++||..+++....+.+|...|.+++|+|++++|++|+.||+|++||+.
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence 45789999999999999666679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEc-------CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE------------------------
Q 003459 90 EAKIVRTLT-------GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT------------------------ 138 (818)
Q Consensus 90 t~~~v~~l~-------~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~------------------------ 138 (818)
+++.+..+. +|...|.+++|+|++++|++++.|++|++||+.+++++..
T Consensus 221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~ 300 (611)
T 1nr0_A 221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 300 (611)
T ss_dssp TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE
Confidence 999988884 7999999999999999999999999999999988765543
Q ss_pred -------------------EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-e----------------
Q 003459 139 -------------------YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-K---------------- 182 (818)
Q Consensus 139 -------------------l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~-~---------------- 182 (818)
+.+|...|.+++|+|+|++|++++.|+.|++||+.+++....+ .
T Consensus 301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 380 (611)
T 1nr0_A 301 SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 380 (611)
T ss_dssp ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC
T ss_pred eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCc
Confidence 3478899999999999999999999999999999876543221 0
Q ss_pred -----------------------------------------------------------------cCCCCEEEEEEeCCC
Q 003459 183 -----------------------------------------------------------------CHEGQIQCIDFHPHE 197 (818)
Q Consensus 183 -----------------------------------------------------------------~h~~~I~sv~fspdg 197 (818)
.|...+.+++|+|+|
T Consensus 381 l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg 460 (611)
T 1nr0_A 381 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK 460 (611)
T ss_dssp EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS
T ss_pred EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC
Confidence 023457889999999
Q ss_pred CEEEEEeCCCeEEEEECCCCeE--EEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC-Cceecc--ccccccce
Q 003459 198 FLLATGSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP-IRCHDA--VDVGWSRL 271 (818)
Q Consensus 198 ~~Lasgs~Dg~I~IwDl~t~~~--i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~-~~~~~~--~~~~~~~v 271 (818)
.+|++|+.|++|++||+.++.. +.. ..|...|.+++|+|||++|++++.+ .+++|+... .++... ...+...+
T Consensus 461 ~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V 539 (611)
T 1nr0_A 461 QFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV 539 (611)
T ss_dssp CEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred CEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccce
Confidence 9999999999999999987654 233 5688899999999999999998877 699999987 554433 23355666
Q ss_pred eeeee-cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 272 SDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 272 ~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
..+.+ ++|++|++|+.|++|++|+++.+.
T Consensus 540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred eEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 66665 799999999999999999998765
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5e-36 Score=326.54 Aligned_cols=246 Identities=20% Similarity=0.421 Sum_probs=236.5
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
...+.+|...|.+++|++ ++.++++|+.|++|++||+.+++.+..+..|...+.+++|+|++++|++|+.||.|++||+
T Consensus 73 ~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~ 151 (321)
T 3ow8_A 73 QWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV 151 (321)
T ss_dssp EEEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEET
T ss_pred eeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEc
Confidence 346889999999999999 6678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (818)
Q Consensus 89 ~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~ 168 (818)
.+++....+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|++++|++|+.||.|+
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 152 ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp TTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred CCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC
Q 003459 169 LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 169 IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
+||+++++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.+++++..+..|...|.+++|+|+|.+|++++.+
T Consensus 232 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d 311 (321)
T 3ow8_A 232 IYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311 (321)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred -CEEEEEe
Q 003459 249 -SLKVFSW 255 (818)
Q Consensus 249 -~I~Vwd~ 255 (818)
.|+|||.
T Consensus 312 ~~i~vwd~ 319 (321)
T 3ow8_A 312 QEIHIYDC 319 (321)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEeC
Confidence 5999985
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=335.98 Aligned_cols=285 Identities=19% Similarity=0.252 Sum_probs=235.4
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-----------CCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-----------KPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG 81 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~-----------~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG 81 (818)
..|...|.+++|+| ++++|++++ |+++++||.. ..........|...|.+++|++++ .|++|+.||
T Consensus 27 ~~~~~~v~~~~fs~-dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg 103 (344)
T 4gqb_B 27 ACMERQLEAARYRS-DGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG 103 (344)
T ss_dssp SSCCSEEEEEEECT-TSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred ccccCCEEEEEECC-CCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence 35778899999999 566787777 6677777621 111111222356789999999985 677999999
Q ss_pred eEEEEECCCCeEEE----EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-
Q 003459 82 TIKLWDLEEAKIVR----TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR- 156 (818)
Q Consensus 82 ~I~IWDl~t~~~v~----~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~- 156 (818)
+|+|||+.+++.+. .+.+|...|.+++|+|+|++|++|+.|+.|++||+.+++++..+.+|...|.+++|++++.
T Consensus 104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTT
T ss_pred EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCC
Confidence 99999999886443 3458999999999999999999999999999999999999999999999999999999874
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003459 157 WVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL 233 (818)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl 233 (818)
+|++++.|+.|++||+++++....+. .+...+.+++|+|+ +.+|++|+.||+|++||+++++++..+..|...|+++
T Consensus 184 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v 263 (344)
T 4gqb_B 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGL 263 (344)
T ss_dssp EEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEE
T ss_pred ceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 78999999999999999999888775 35567999999995 6789999999999999999999999999999999999
Q ss_pred EEeCCC-CEEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCC-CEEEEEEcCCeEEEEEecCCCc
Q 003459 234 TFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEG-KLLGCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 234 ~fspdg-~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g-~lLatg~~Dg~V~IWdvd~~~~ 301 (818)
+|+|+| ++|++|+.| .|+|||...+++.. +..+...+..+.+ +++ .+|++++.|++|++|+++...+
T Consensus 264 ~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 264 VFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999998 578888766 69999999887664 3456667788876 455 5788999999999999987653
No 20
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.5e-35 Score=314.89 Aligned_cols=286 Identities=22% Similarity=0.353 Sum_probs=252.1
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc---eEEEec--CCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN---AILSLS--GHTSGIDSVSFDSSEVLVAAGAASG 81 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~---~i~~l~--~h~~~V~~l~fspdg~~Lasgs~DG 81 (818)
.+.....+|.+.|++++|+| ++++|++++ ||.|++|++.++. .+..+. +|...|.+++|+|++++|++++.||
T Consensus 42 ~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 119 (337)
T 1gxr_A 42 ARQINTLNHGEVVCAVTISN-PTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119 (337)
T ss_dssp EEEEEEECCSSCCCEEEECS-SSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred cccceeccCCCceEEEEEec-CCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCC
Confidence 34445568999999999999 677888888 9999999997664 233333 7899999999999999999999999
Q ss_pred eEEEEECCCCe--EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003459 82 TIKLWDLEEAK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 82 ~I~IWDl~t~~--~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~ 159 (818)
.|++||+.+++ ....+..|...|.+++|+|++++|++++.||.|++||+++++.+..+..|...|.+++|+|++++|+
T Consensus 120 ~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 199 (337)
T 1gxr_A 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199 (337)
T ss_dssp EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred cEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEE
Confidence 99999999887 6677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003459 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg 239 (818)
+++.||.|++||+++++.+..+. +...+.+++|+|++.+|++++.|+.|++||+++++.. .+..|...|.+++|+|++
T Consensus 200 ~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~ 277 (337)
T 1gxr_A 200 TGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCG 277 (337)
T ss_dssp EEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTS
T ss_pred EEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCC
Confidence 99999999999999999888876 7788999999999999999999999999999988764 567888999999999999
Q ss_pred CEEEEEECC-CEEEEEecCCceeccccccccceeeee-ecCCCEEEEEEcCCeEEEEEec
Q 003459 240 RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLN-VHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 240 ~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~-~~~g~lLatg~~Dg~V~IWdvd 297 (818)
++|++++.+ .+++|++...+....... ...+..+. .+++++|++++.||.|++|++-
T Consensus 278 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 278 KWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CEEEEecCCCcEEEEECCCCeEEEEecC-CCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 999998876 499999998877644433 34455554 4789999999999999999974
No 21
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.7e-36 Score=325.93 Aligned_cols=288 Identities=14% Similarity=0.203 Sum_probs=254.2
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
+..|.+.|++++|+| ++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|++||+.
T Consensus 4 ~~~~~~~i~~~~~s~-~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 4 HSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EESCSSCCCEEEECT-TSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred ecccCCCeEEEEECC-CCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 556999999999999 67789999999999999998887 888999999999999999999999999999999999999
Q ss_pred CCeEEEEE--cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE---EEE-EecCCCCeEEEEEcCCCCEEEEEEC
Q 003459 90 EAKIVRTL--TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC---IHT-YKGHTRGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 90 t~~~v~~l--~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~---i~~-l~~h~~~V~~l~fspdg~~L~sgs~ 163 (818)
+++....+ ..|...|.+++|+|++++|++++.||.|++||++.+.. ... ...|...|.+++|+|++++|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 162 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 162 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence 88755444 67889999999999999999999999999999988762 333 3568899999999999999999999
Q ss_pred CCeEEEEEC------------------CCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC
Q 003459 164 DNTVKLWDL------------------TAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP 225 (818)
Q Consensus 164 Dg~I~IwDl------------------~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~ 225 (818)
||.|++||+ ..++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+..
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 242 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS 242 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence 999999995 46788999989999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCEEEEEecC--Cce----------------------e----------------ccc-
Q 003459 226 ETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP--IRC----------------------H----------------DAV- 264 (818)
Q Consensus 226 ~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~--~~~----------------------~----------------~~~- 264 (818)
|...|.+++|+|++.+|++|.++.+++|++.. +.. . ..+
T Consensus 243 ~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (372)
T 1k8k_C 243 ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD 322 (372)
T ss_dssp SSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred CCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccccc
Confidence 99999999999999999999777899999987 310 0 111
Q ss_pred cccccceeeee-e-cCC---CEEEEEEcCCeEEEEEecCCC
Q 003459 265 DVGWSRLSDLN-V-HEG---KLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 265 ~~~~~~v~~l~-~-~~g---~lLatg~~Dg~V~IWdvd~~~ 300 (818)
..+...+..+. . .+| .+|++|+.||.|++|+++..+
T Consensus 323 ~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 323 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 24556777775 3 566 999999999999999987644
No 22
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-36 Score=335.43 Aligned_cols=287 Identities=14% Similarity=0.234 Sum_probs=237.6
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeC------CCeEEEEECCCCce----EEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGE------DHKVNLWAIGKPNA----ILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~------Dg~V~lWdl~~~~~----i~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (818)
....|...|++++|+| ++++|++|+. |+.|++|+..++.. .....+|...|.+++|+|++.++ +++.|
T Consensus 37 ~p~~H~~~V~~v~fSp-DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~d 114 (357)
T 4g56_B 37 APACMEVQIGAVRYRR-DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDS 114 (357)
T ss_dssp ---CCCSEEEEEEECS-SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETT
T ss_pred CcccccCCEEEEEECC-CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECC
Confidence 3457999999999999 6778999987 78899999866543 23445688999999999998655 67889
Q ss_pred CeEEEEECCCCeEEE----EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003459 81 GTIKLWDLEEAKIVR----TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (818)
Q Consensus 81 G~I~IWDl~t~~~v~----~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~ 156 (818)
|+|+|||+.+++... ...+|...|.+++|+|++++|++|+.||.|++||+++++++..+.+|...|.+++|++++.
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~ 194 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD 194 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC
Confidence 999999999876543 3457999999999999999999999999999999999999999999999999999999875
Q ss_pred -EEEEEECCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003459 157 -WVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (818)
Q Consensus 157 -~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~s 232 (818)
++++++.||.|++||+++++.+..+. .+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..|...|++
T Consensus 195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 274 (357)
T 4g56_B 195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274 (357)
T ss_dssp SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEE
T ss_pred ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEE
Confidence 78999999999999999988776554 46678999999997 578999999999999999999999999999999999
Q ss_pred EEEeCCC-CEEEEEECC-CEEEEEecCCceeccccccccceeeeeec--CCCEEEEEEcCCeEEEEEecCCC
Q 003459 233 LTFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVH--EGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 233 l~fspdg-~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~--~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
++|+|++ ++|++|+.| .|+|||++.+++...+ .+...+..+.++ ++++|++++.||.|++|++....
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999987 578888766 6999999998877655 355667777763 78999999999999999986543
No 23
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.1e-36 Score=337.47 Aligned_cols=247 Identities=24% Similarity=0.470 Sum_probs=236.2
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||+.+++++..+.+|...|.+++|+|++.+|++|+.|++|++||
T Consensus 142 ~~~~l~~h~~~V~~v~~~~-~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd 220 (410)
T 1vyh_C 142 FERTLKGHTDSVQDISFDH-SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220 (410)
T ss_dssp CCEEECCCSSCEEEEEECT-TSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EEEEEeccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 4567899999999999999 677999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC-------------
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD------------- 154 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd------------- 154 (818)
+.++..+..+.+|...|.++.|++++.+|++|+.|+.|++||+.++++...+.+|...|.+++|+|+
T Consensus 221 ~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 300 (410)
T 1vyh_C 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300 (410)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC
T ss_pred CCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred -------CCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCC
Q 003459 155 -------GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET 227 (818)
Q Consensus 155 -------g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~ 227 (818)
|.+|++|+.|+.|++||+++++++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++++..+..|.
T Consensus 301 ~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~ 380 (410)
T 1vyh_C 301 TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380 (410)
T ss_dssp -------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS
T ss_pred ccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003459 228 SGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
..|++++|+|++.+|++|+.| .|+||+.
T Consensus 381 ~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 999999999999999999877 5999975
No 24
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.2e-35 Score=351.87 Aligned_cols=292 Identities=22% Similarity=0.316 Sum_probs=256.9
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECC----
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAAS---- 80 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~--~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D---- 80 (818)
..+..|.+|...|++++|+| ++++||+|+.||+|+|||+.++ .....+.+|...|.+++|+|++++|++++.+
T Consensus 50 ~~~~~~~~h~~~v~~~~~sp-dg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~ 128 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 128 (611)
T ss_dssp SCCEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCS
T ss_pred ccCeEecCCCCceEEEEECC-CCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCce
Confidence 34567889999999999999 6789999999999999998644 3456788999999999999999999998865
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~ 159 (818)
+.|++|| .++....+.+|...|.+++|+|++. .|++|+.|++|++||...++++..+.+|...|.+++|+|+|++|+
T Consensus 129 ~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~la 206 (611)
T 1nr0_A 129 GHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFA 206 (611)
T ss_dssp EEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred eEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEE
Confidence 4677777 5666778899999999999999987 699999999999999999999999999999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEe-------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE----------
Q 003459 160 SGGEDNTVKLWDLTAGKLLHDFK-------CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS---------- 222 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~-------~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~---------- 222 (818)
+++.|+.|++||+.+++.+..+. +|.+.|.+++|+|++.+|++++.|++|++||+.+++.+..
T Consensus 207 s~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~ 286 (611)
T 1nr0_A 207 STGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286 (611)
T ss_dssp EEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGC
T ss_pred EEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccce
Confidence 99999999999999999988884 6999999999999999999999999999999998765433
Q ss_pred ---------------------------------eCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccc-ccc
Q 003459 223 ---------------------------------AGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DVG 267 (818)
Q Consensus 223 ---------------------------------~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~-~~~ 267 (818)
+.+|...|.+++|+|||++|++++.+ .+++||+.++.+...+ ..+
T Consensus 287 ~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h 366 (611)
T 1nr0_A 287 QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH 366 (611)
T ss_dssp EEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSC
T ss_pred eEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCC
Confidence 35688899999999999999999876 6999999988776554 445
Q ss_pred ccceeeeeecCCCEEEEEEcCCeEEEEEecCCCc
Q 003459 268 WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 268 ~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~ 301 (818)
...+..+.+..+..+++++.|+.+++|++.....
T Consensus 367 ~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~ 400 (611)
T 1nr0_A 367 ATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 (611)
T ss_dssp SSCEEEEEECTTSCEEEEETTTEEEEECSSSSSS
T ss_pred cceEEEEEECCCCcEEEEEcCCceEEeecCCccc
Confidence 5667777776777888999999999999887653
No 25
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.9e-35 Score=338.33 Aligned_cols=282 Identities=28% Similarity=0.519 Sum_probs=257.5
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
..+..+.+|...|.+++|+| ++.+|++++.||.|++||.. +..+..+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus 294 ~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~ 371 (577)
T 2ymu_A 294 QLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 371 (577)
T ss_dssp CEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cEEEEEecCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 34567889999999999999 67789999999999999975 55677888999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
|. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.
T Consensus 372 ~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~ 449 (577)
T 2ymu_A 372 NR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT 449 (577)
T ss_dssp ET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE
Confidence 95 67888899999999999999999999999999999999995 57788899999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
|++||. +++.+..+.+|...|.+++|+|++.+|++++.|+.|++||. +++++..+.+|...|++++|+|||++|++++
T Consensus 450 v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 450 VKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp EEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred EEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 999996 57788889999999999999999999999999999999995 6888889999999999999999999999998
Q ss_pred CCC-EEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 247 HES-LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 247 ~d~-I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
.++ |+|||. ++++...+..+...+..+.+ ++|++|++++.|++|++||
T Consensus 528 ~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 528 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 774 999995 56677777777777877765 7899999999999999997
No 26
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-35 Score=323.46 Aligned_cols=289 Identities=16% Similarity=0.301 Sum_probs=252.2
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEEC----CCCc------eEEEecC----------CCCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI----GKPN------AILSLSG----------HTSGIDSVSF 67 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl----~~~~------~i~~l~~----------h~~~V~~l~f 67 (818)
+......|.+.|++++|+|++..+|++|+.||.|++|++ .+++ ....+.. |...|.+++|
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW 116 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence 334455677999999999954439999999999999999 8887 4555554 6789999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE---------
Q 003459 68 DSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT--------- 138 (818)
Q Consensus 68 spdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~--------- 138 (818)
+|++++|++|+.||.|++|| .+++.+..+..|...|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 117 s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 117 SHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred cCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 99999999999999999999 77888999999999999999999999999999999999999987765443
Q ss_pred -----------------------------------------------EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 139 -----------------------------------------------YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 139 -----------------------------------------------l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
+..|...|.+++|+|++++|++++.||.|++||
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d 275 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275 (425)
T ss_dssp ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEC
T ss_pred ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 335778899999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CE
Q 003459 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SL 250 (818)
Q Consensus 172 l~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I 250 (818)
+++++.+..+..|...|.+++|+|++ +|++++.||.|++||+++++.+..+..|...|.+++|+|+|++|++++.+ .+
T Consensus 276 ~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 354 (425)
T 1r5m_A 276 GGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQV 354 (425)
T ss_dssp SSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeE
Confidence 99999999998899999999999999 99999999999999999999999999999999999999999999998876 69
Q ss_pred EEEEecCCc--------------------eecccccccc--ceeeeee-cCCCEEEEEEcCCeEEEEEecC
Q 003459 251 KVFSWEPIR--------------------CHDAVDVGWS--RLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 251 ~Vwd~~~~~--------------------~~~~~~~~~~--~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
++|++.... ....+..+.. .+..+.+ +++++|++++.||.|++|+++.
T Consensus 355 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 355 NVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp EEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECCC
T ss_pred EEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeecC
Confidence 999998777 6666666644 6777765 6899999999999999999863
No 27
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-35 Score=322.72 Aligned_cols=284 Identities=17% Similarity=0.334 Sum_probs=247.0
Q ss_pred EecCCCCEEEEEEeeC---CCcEEEEEeCCCeEEEEECCCCceEEEecC-----CCCCeEEEEEcCC----CCEEEEEEC
Q 003459 12 FVAHSSTVNCLKIGRK---SSRVLVTGGEDHKVNLWAIGKPNAILSLSG-----HTSGIDSVSFDSS----EVLVAAGAA 79 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~---~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~-----h~~~V~~l~fspd----g~~Lasgs~ 79 (818)
..+|.+.|++++|+|+ +...+++++.++.|++||+.+++.+..+.. |...|.+++|+|+ +.+|++|+.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999984 455677777778999999998887766653 5678999999998 679999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCeEEEEEcCCC
Q 003459 80 SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAIRFTPDG 155 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~l---~~h~~~V~~l~fspdg 155 (818)
||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||+++++.+..+ ..|...|.+++|+|++
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG 173 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS
T ss_pred CCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC
Confidence 99999999999999999999999999999999 8999999999999999999999999988 6899999999999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEe----------------------------cCCCCEEEEEEeCCCCEEEEEeCCC
Q 003459 156 RWVVSGGEDNTVKLWDLTAGKLLHDFK----------------------------CHEGQIQCIDFHPHEFLLATGSADR 207 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~----------------------------~h~~~I~sv~fspdg~~Lasgs~Dg 207 (818)
++|++++.||.|++||+++++....+. .|...|.+++|+ +.+|++++.||
T Consensus 174 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~ 251 (366)
T 3k26_A 174 EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCEN 251 (366)
T ss_dssp SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSS
T ss_pred CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCC
Confidence 999999999999999999875443332 388999999999 67999999999
Q ss_pred eEEEEECCCCe--------------EEEEeCCCCCCeeEEEEeCC--CCEEEEEECC-CEEEEEecCCceec----cccc
Q 003459 208 TVKFWDLETFE--------------LIGSAGPETSGVRCLTFNPD--GRTLLCGLHE-SLKVFSWEPIRCHD----AVDV 266 (818)
Q Consensus 208 ~I~IwDl~t~~--------------~i~~~~~~~~~I~sl~fspd--g~~Lasgs~d-~I~Vwd~~~~~~~~----~~~~ 266 (818)
.|++||+.+++ .+..+..|...|.+++|+|+ |++|++|+.+ .|++|++...+... .+..
T Consensus 252 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 331 (366)
T 3k26_A 252 AIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTH 331 (366)
T ss_dssp EEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECC
T ss_pred EEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcc
Confidence 99999998764 47778888999999999999 9999999876 59999999876543 3444
Q ss_pred c--ccceeeeee-cCCCEEEEEEcCCeEEEEEec
Q 003459 267 G--WSRLSDLNV-HEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 267 ~--~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd 297 (818)
+ ...+..+.+ +++++|++++.||.|++||+.
T Consensus 332 ~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 332 HKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 3 456666665 789999999999999999985
No 28
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-34 Score=306.43 Aligned_cols=287 Identities=18% Similarity=0.277 Sum_probs=256.4
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
...++.+.+|.+.|++++| + ++.+|++|+.||.|++||+.+++....+..|...|.+++|+|++.+|++++.||.|++
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~-~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 85 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-V-DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING 85 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-E-ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred HHHHHHhhCCCCCcEEEEe-c-CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence 3556789999999999999 7 5668999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCC---eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC-CCCEEEEE
Q 003459 86 WDLEEA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP-DGRWVVSG 161 (818)
Q Consensus 86 WDl~t~---~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp-dg~~L~sg 161 (818)
|++... +.+..+.+|...|.++.| ++.+|++++.||.|++|| .++.+..+..|...+.+++|.| ++++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 161 (313)
T 3odt_A 86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA 161 (313)
T ss_dssp EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence 998654 667888899999999999 578999999999999999 6788889999999999999998 99999999
Q ss_pred ECCCeEEEEECCCCeEEEEEec-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003459 162 GEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (818)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~-h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~ 240 (818)
+.||.|++|| .++....+.. |...+.+++|+|++. +++++.||.|++||+++++.+..+..|...|.+++|+|+|.
T Consensus 162 ~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 238 (313)
T 3odt_A 162 SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD 238 (313)
T ss_dssp ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC
T ss_pred ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC
Confidence 9999999999 5667777776 889999999999998 99999999999999999999999999999999999999996
Q ss_pred EEEEEE-CCCEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 241 TLLCGL-HESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 241 ~Lasgs-~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
|++++ ++.+++|++...+....+..+...+..+.+ ++++ +++++.||.|++|+++.++...
T Consensus 239 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 239 -IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp -EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred -EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence 55555 456999999999988888877777877776 5666 6679999999999998876544
No 29
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.8e-34 Score=310.86 Aligned_cols=251 Identities=24% Similarity=0.490 Sum_probs=231.5
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
...+..+..|...|.+++|+| ++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||+|++
T Consensus 45 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~l 123 (304)
T 2ynn_A 45 QVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123 (304)
T ss_dssp TEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred CceeEEeeccCCcEEEEEEeC-CCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEE
Confidence 446778899999999999999 6778999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCC-eEEEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEcC--CCCEEEE
Q 003459 86 WDLEEA-KIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFTP--DGRWVVS 160 (818)
Q Consensus 86 WDl~t~-~~v~~l~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~-~h~~~V~~l~fsp--dg~~L~s 160 (818)
||+.++ .....+.+|...|.+++|+| ++.+|++|+.|+.|++||++++.....+. .|...+..+.|+| ++.+|++
T Consensus 124 Wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s 203 (304)
T 2ynn_A 124 WNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203 (304)
T ss_dssp EEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE
T ss_pred EECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE
Confidence 999887 56678899999999999999 57899999999999999998877665554 5667899999987 7789999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003459 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (818)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~ 240 (818)
|+.|+.|++||+++++++..+.+|...|.+++|+|++.+|++|+.||+|++||+.+++.+..+..+...+.+++|+|++.
T Consensus 204 ~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (304)
T 2ynn_A 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGR 283 (304)
T ss_dssp EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCG
T ss_pred EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred --EEEEEECCCEEEEEecC
Q 003459 241 --TLLCGLHESLKVFSWEP 257 (818)
Q Consensus 241 --~Lasgs~d~I~Vwd~~~ 257 (818)
++++|+++++.+|++..
T Consensus 284 ~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 284 KNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp GGCEEEEETTEEEEEECC-
T ss_pred ceEEEEecCCceEEEEecc
Confidence 68999999999998764
No 30
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-37 Score=336.31 Aligned_cols=244 Identities=12% Similarity=0.138 Sum_probs=214.3
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~--~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
.+..|.+.|+|++|+| ++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 6 ~~~~~~~~v~~~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEK 84 (377)
T ss_dssp EEEECSSCCSCCEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred eEecCCCcEEEEEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence 4556788999999999 6778999999999999999888 778888999999999999999999999999999999999
Q ss_pred CCCe---EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe---EEEEEec-CCCCeEEEEEcCCCCEEEEE
Q 003459 89 EEAK---IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG---CIHTYKG-HTRGVNAIRFTPDGRWVVSG 161 (818)
Q Consensus 89 ~t~~---~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~---~i~~l~~-h~~~V~~l~fspdg~~L~sg 161 (818)
.+++ ....+.+|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|++++|+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~ 164 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG 164 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence 9877 677788899999999999999999999999999999999877 4677777 99999999999999999999
Q ss_pred ECCCeEEEEECC------------------CCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE----
Q 003459 162 GEDNTVKLWDLT------------------AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL---- 219 (818)
Q Consensus 162 s~Dg~I~IwDl~------------------t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~---- 219 (818)
+.||.|++||+. .++.+..+ .|...|.+++|+|++.+|++++.||.|++||+.+++.
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 243 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA 243 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence 999999999985 35566677 8999999999999999999999999999999999877
Q ss_pred EEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 220 IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 220 i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
+..+..|...|.+++|+|+|++|++|+++++.+|+..
T Consensus 244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp CCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred eEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 7778889999999999999999999999988898876
No 31
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=7.3e-35 Score=322.31 Aligned_cols=288 Identities=15% Similarity=0.206 Sum_probs=240.2
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcC-CCCEEEEEECCCe
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDS-SEVLVAAGAASGT 82 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~--~h~~~V~~l~fsp-dg~~Lasgs~DG~ 82 (818)
......+.+|.+.|++++|+|++.++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++.+|++++.||.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 345668899999999999999655899999999999999999888877765 6999999999999 7899999999999
Q ss_pred EEEEECCCCeEEEEEcCC---CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EE
Q 003459 83 IKLWDLEEAKIVRTLTGH---RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-WV 158 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h---~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~-~L 158 (818)
|++||+.. ..+..+..+ ...|.+++|+|++.+|++|+.||.|++||+ +++.+..+..|...|.+++|+|+++ +|
T Consensus 143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l 220 (383)
T 3ei3_B 143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLM 220 (383)
T ss_dssp EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEE
T ss_pred EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEE
Confidence 99999986 555555444 478999999999999999999999999999 5778899999999999999999999 99
Q ss_pred EEEECCCeEEEEECCC----CeEEEEEecCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeEEEEeCCC-------
Q 003459 159 VSGGEDNTVKLWDLTA----GKLLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGPE------- 226 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t----~~~i~~~~~h~~~I~sv~fsp-dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~------- 226 (818)
++++.|+.|++||+++ +..+..+ .|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+..|
T Consensus 221 ~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 299 (383)
T 3ei3_B 221 ATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQH 299 (383)
T ss_dssp EEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTT
T ss_pred EEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccccccccc
Confidence 9999999999999998 6677766 5899999999999 9999999999999999999987665544322
Q ss_pred CCC----------eeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccc--cccceeeee-ecCCCEEEEEEcCCeEEE
Q 003459 227 TSG----------VRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV--GWSRLSDLN-VHEGKLLGCSYNQSCVGV 293 (818)
Q Consensus 227 ~~~----------I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~--~~~~v~~l~-~~~g~lLatg~~Dg~V~I 293 (818)
... +..++|+|+|++ ..+.++.++|||+.++++...+.. +...+..+. .+++++|++|+ ||.|++
T Consensus 300 ~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~i 377 (383)
T 3ei3_B 300 LTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILI 377 (383)
T ss_dssp SCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEE
T ss_pred ccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEE
Confidence 222 333555555555 222345799999999988777754 234455534 47899999996 999999
Q ss_pred EEecC
Q 003459 294 WVVDI 298 (818)
Q Consensus 294 Wdvd~ 298 (818)
|+++.
T Consensus 378 w~~~~ 382 (383)
T 3ei3_B 378 WNRED 382 (383)
T ss_dssp EECC-
T ss_pred EecCC
Confidence 99875
No 32
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.5e-35 Score=317.27 Aligned_cols=293 Identities=19% Similarity=0.243 Sum_probs=245.5
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeC---CCeEEEEECCCCceEEEe-cCCCCCeEEEEEcCC---CCEEEEEEC
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGE---DHKVNLWAIGKPNAILSL-SGHTSGIDSVSFDSS---EVLVAAGAA 79 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~---Dg~V~lWdl~~~~~i~~l-~~h~~~V~~l~fspd---g~~Lasgs~ 79 (818)
.....+.+|.+.|.+++|+|++..++++|+. ||.|++||+.+++..... .+|...|.+++|+|+ +.+|++|+.
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~ 88 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF 88 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC
Confidence 3344568899999999999977778888876 999999999988765443 379999999999998 699999999
Q ss_pred CCeEEEEECCCCe-EEEEEcCCCCCeEEEEE------eCCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCC----CeE
Q 003459 80 SGTIKLWDLEEAK-IVRTLTGHRSNCISVDF------HPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTR----GVN 147 (818)
Q Consensus 80 DG~I~IWDl~t~~-~v~~l~~h~~~V~sv~f------spdg~~Lasgs~Dg~I~IwDl~~~~-~i~~l~~h~~----~V~ 147 (818)
||.|++||+.+++ .+..+.+|...|.+++| +|++++|++++.||.|++||+++++ .+..+..|.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999988 88899999999999965 6789999999999999999999887 6777776554 799
Q ss_pred EEE----EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEECCCCeEE
Q 003459 148 AIR----FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHP---HEFLLATGSADRTVKFWDLETFELI 220 (818)
Q Consensus 148 ~l~----fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fsp---dg~~Lasgs~Dg~I~IwDl~t~~~i 220 (818)
+++ |+|++++|++++.||.|++||+++++.... ..|...|.+++|+| ++.+|++++.||.|++||+++++.+
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 247 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPT 247 (357)
T ss_dssp EEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETT
T ss_pred EEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcc
Confidence 998 688999999999999999999999987655 45889999999999 8999999999999999999876644
Q ss_pred EEe-----CCCCCCeeEEEEeCCCC-EEEEEECC-CEEEEEecCCc-------------------eeccccccccceeee
Q 003459 221 GSA-----GPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPIR-------------------CHDAVDVGWSRLSDL 274 (818)
Q Consensus 221 ~~~-----~~~~~~I~sl~fspdg~-~Lasgs~d-~I~Vwd~~~~~-------------------~~~~~~~~~~~v~~l 274 (818)
..+ ..|...|.+++|+|++. +|++|+.+ .+++|++.... ....+..+...+..+
T Consensus 248 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~ 327 (357)
T 3i2n_A 248 KGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSL 327 (357)
T ss_dssp TEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEE
T ss_pred cceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEE
Confidence 433 38899999999999998 78888776 59999998543 333445556667777
Q ss_pred ee-cCCCEEE-EEEcCCeEEEEEecCCC
Q 003459 275 NV-HEGKLLG-CSYNQSCVGVWVVDISR 300 (818)
Q Consensus 275 ~~-~~g~lLa-tg~~Dg~V~IWdvd~~~ 300 (818)
.+ +++++|+ +++.||.|++|++...+
T Consensus 328 ~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 328 DWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp EECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 65 6788887 89999999999997643
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=318.70 Aligned_cols=243 Identities=21% Similarity=0.264 Sum_probs=213.8
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE----ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS----LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~----l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
..|...|.+++|+|+ + .|++|+.||+|+|||+.+++.+.. +.+|...|++++|+|++++|++|+.||+|++||+
T Consensus 79 ~~~~~~v~~~~~s~d-~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 79 VQTEAGVADLTWVGE-R-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp EEESSCEEEEEEETT-T-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eccCCCEEEEEEeCC-C-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 346678999999994 3 588999999999999988876543 4489999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEEEcC-CCCEEEEEECC
Q 003459 89 EEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTP-DGRWVVSGGED 164 (818)
Q Consensus 89 ~t~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~--~h~~~V~~l~fsp-dg~~L~sgs~D 164 (818)
.+++.+..+.+|...|.+++|++++. +|++|+.|+.|++||+++++++..+. .|...+.+++|+| ++++|++|+.|
T Consensus 157 ~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~d 236 (344)
T 4gqb_B 157 AQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDEN 236 (344)
T ss_dssp TTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETT
T ss_pred CCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccC
Confidence 99999999999999999999999985 78999999999999999999888774 4556799999999 56788999999
Q ss_pred CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC-EE
Q 003459 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TL 242 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg-~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~-~L 242 (818)
|.|++||+++++++..+.+|...|++++|+|++ .+|++|+.|++|+|||+.+++++ .+.+|...|++++|+|+|. +|
T Consensus 237 g~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 237 GTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp SEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEE
T ss_pred CcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEE
Confidence 999999999999999999999999999999997 58999999999999999998865 5688999999999999986 45
Q ss_pred EEEECC-CEEEEEecCC
Q 003459 243 LCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 243 asgs~d-~I~Vwd~~~~ 258 (818)
++++.| .|++|++...
T Consensus 316 as~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 316 TTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEETTSCEEEEECCC-
T ss_pred EEEcCCCeEEEEECCCC
Confidence 677654 7999998764
No 34
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.3e-34 Score=313.86 Aligned_cols=247 Identities=27% Similarity=0.474 Sum_probs=228.6
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDSSEVLVAAGAASG 81 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~----~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG 81 (818)
..++..+..|...|.+++|+| ++.+|++|+.|+.|++|++.+. .....+.+|...|.++.|++++. +++++.||
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~ 164 (340)
T 1got_B 87 TNKVHAIPLRSSWVMTCAYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDT 164 (340)
T ss_dssp CCEEEEEECSSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTS
T ss_pred CCcceEeecCCccEEEEEECC-CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCC
Confidence 345678889999999999999 6779999999999999999765 35667889999999999998775 88999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE
Q 003459 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG 161 (818)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sg 161 (818)
+|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.||.|++||++++.++..+.+|...|.+++|+|++++|++|
T Consensus 165 ~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 244 (340)
T 1got_B 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244 (340)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred cEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEec--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003459 162 GEDNTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~--h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg 239 (818)
+.||.|++||+++++.+..+.. +...|.+++|+|++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|+|
T Consensus 245 s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg 324 (340)
T 1got_B 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG 324 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred cCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCC
Confidence 9999999999999988877763 23479999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEECC-CEEEEE
Q 003459 240 RTLLCGLHE-SLKVFS 254 (818)
Q Consensus 240 ~~Lasgs~d-~I~Vwd 254 (818)
.+|++|+.| .|+||+
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 999999877 599995
No 35
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2e-33 Score=327.29 Aligned_cols=290 Identities=28% Similarity=0.523 Sum_probs=260.7
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
...+..+.+|...|++++|+| ++.+|++++.|+.|++|+. +++.+..+.+|...|.+++|+|++.+|++++.||.|++
T Consensus 252 ~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~ 329 (577)
T 2ymu_A 252 GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL 329 (577)
T ss_dssp SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence 345678899999999999999 6778999999999999996 56788889999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg 165 (818)
||+. +..+..+.+|...+.+++|+|++++|++++.||.|++||. +++.+..+.+|...|.+++|+|+|++|++++.|+
T Consensus 330 w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~ 407 (577)
T 2ymu_A 330 WNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407 (577)
T ss_dssp EETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred EeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCC
Confidence 9976 4556778899999999999999999999999999999995 5778889999999999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEE
Q 003459 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasg 245 (818)
.|++||. +++.+..+..|...|++++|+|++.+|++++.|+.|++||. +++.+..+..|...|.+++|+|||++|+++
T Consensus 408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~ 485 (577)
T 2ymu_A 408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA 485 (577)
T ss_dssp EEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEE
T ss_pred EEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 9999995 57888889999999999999999999999999999999996 567888888999999999999999999999
Q ss_pred ECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCce
Q 003459 246 LHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 246 s~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
+.+ .|++|+. ++++...+..+...+..+.+ ++|++|++++.||.|++||.+...+.
T Consensus 486 ~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~ 543 (577)
T 2ymu_A 486 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 543 (577)
T ss_dssp ETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEE
T ss_pred eCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEE
Confidence 877 5999995 56677777777777777765 78999999999999999997654433
No 36
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=5.2e-33 Score=315.50 Aligned_cols=288 Identities=20% Similarity=0.367 Sum_probs=252.9
Q ss_pred eeEEEEecCCCCE-EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 7 YKLQEFVAHSSTV-NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 7 ~kl~~~~~H~~~V-~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
.....+.+|...| .|+.+. +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|++++ +|++|+.||+|++
T Consensus 112 ~~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp CEEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred cceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 3567899999885 676664 4589999999999999999999999999999999999999988 9999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEe--CCCCEEEEEECCCcEEEEECCCCe-----------------------EEEEEe
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFH--PFGEFFASGSLDTNLKIWDIRKKG-----------------------CIHTYK 140 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fs--pdg~~Lasgs~Dg~I~IwDl~~~~-----------------------~i~~l~ 140 (818)
||+.+++.+..+.+|...|.+++|+ +++.+|++|+.||.|++||++++. .+..+.
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9999999999999999999999998 577899999999999999998765 255677
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 003459 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (818)
Q Consensus 141 ~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i 220 (818)
+|...+.++ ++++++|++++.||.|++||+++++.+..+.+|...|.+++|+|++.+|++|+.||.|++||+++++.+
T Consensus 268 ~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 345 (464)
T 3v7d_B 268 GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345 (464)
T ss_dssp CCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred CccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 888888877 567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCC
Q 003459 221 GSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
..+..|...|.++.|+ +.+|++++.+ .+++||+.....................++++++++|+ ||.|++||+..+
T Consensus 346 ~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 346 YTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred EEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 9999999999999997 5788888776 59999998876554443332222233457889999988 899999999998
Q ss_pred Ccee
Q 003459 300 RIEP 303 (818)
Q Consensus 300 ~~~~ 303 (818)
+...
T Consensus 423 ~~~~ 426 (464)
T 3v7d_B 423 KLVH 426 (464)
T ss_dssp CEEE
T ss_pred cEEe
Confidence 7654
No 37
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-33 Score=303.80 Aligned_cols=248 Identities=23% Similarity=0.467 Sum_probs=225.4
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
..+..+.+|...|.+++|+| ++.+|++|+.|++|++||+.+++.+..+.+|...|.+++|++++.+|++|+.||+|++|
T Consensus 56 ~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vw 134 (319)
T 3frx_A 56 VPVRSFKGHSHIVQDCTLTA-DGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134 (319)
T ss_dssp EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred ccceEEeCCcccEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 34678899999999999999 67889999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCC------CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFG------EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg------~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~s 160 (818)
|+. ++.+..+.+|...|.++.|.|.+ .+|++++.|+.|++||+++.+....+.+|...|.+++|+|+|++|++
T Consensus 135 d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s 213 (319)
T 3frx_A 135 TIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS 213 (319)
T ss_dssp ETT-SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE
T ss_pred ECC-CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE
Confidence 986 56778889999999999999854 48999999999999999999999999999999999999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC--------CCCCeeE
Q 003459 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP--------ETSGVRC 232 (818)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~--------~~~~I~s 232 (818)
++.||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++. +.+++|++.....+..+.. +...+.+
T Consensus 214 ~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 291 (319)
T 3frx_A 214 AGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVS 291 (319)
T ss_dssp EETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEE
T ss_pred EeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeE
Confidence 99999999999999999998885 568999999999999999885 4599999998887776643 3456899
Q ss_pred EEEeCCCCEEEEEECC-CEEEEEecCC
Q 003459 233 LTFNPDGRTLLCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 233 l~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (818)
++|+|||++|++|+.| .|+||++.+.
T Consensus 292 ~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 292 LAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEECCCCCEEEEeecCceEEEEEEeec
Confidence 9999999999999877 5999998653
No 38
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.6e-35 Score=325.66 Aligned_cols=279 Identities=18% Similarity=0.213 Sum_probs=244.2
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 003459 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT 98 (818)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~ 98 (818)
+++++|+| ++++|++|+.||.|++||+.+++....+..| ..+....|++++++|++|+.||.|++||+.+++....+.
T Consensus 59 ~~~~~~s~-~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 136 (420)
T 3vl1_A 59 GKGNTFEK-VGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ 136 (420)
T ss_dssp CTTCEEEE-EETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT
T ss_pred ccceeeee-cCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc
Confidence 44799999 5667999999999999999887766666655 445555789999999999999999999999999998888
Q ss_pred CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003459 99 GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL 178 (818)
Q Consensus 99 ~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i 178 (818)
+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+++++.+
T Consensus 137 ~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEec---CCCCEEEEE---------------------EeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC-CCCCCeeEE
Q 003459 179 HDFKC---HEGQIQCID---------------------FHPHEFLLATGSADRTVKFWDLETFELIGSAG-PETSGVRCL 233 (818)
Q Consensus 179 ~~~~~---h~~~I~sv~---------------------fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~-~~~~~I~sl 233 (818)
..+.. +...+.+++ |+|++.+|++|+.||.|++||+++++.+..+. .|...|.++
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 296 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSL 296 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeE
Confidence 98875 344455555 57889999999999999999999998877764 477899999
Q ss_pred EEeCCCC-EEEEEECC-CEEEEEecCCce-eccccc-cccceeeeeecCCCEEEEEEcCCeEEEEEecCC
Q 003459 234 TFNPDGR-TLLCGLHE-SLKVFSWEPIRC-HDAVDV-GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 234 ~fspdg~-~Lasgs~d-~I~Vwd~~~~~~-~~~~~~-~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
+|+|++. +|++|+.+ .+++||+...+. ...+.. +...+..+.++++++|++++.|+.|++|++...
T Consensus 297 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 297 TVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred EEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 9999999 99988876 599999988754 444443 556778888889999999999999999999874
No 39
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-35 Score=325.90 Aligned_cols=285 Identities=19% Similarity=0.332 Sum_probs=248.8
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC----CceEEEecCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEEC
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----PNAILSLSGHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~----~~~i~~l~~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl 88 (818)
.|...|++++|+| ++.+|++|+.||.|++|++.+ .+.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 65 ~~~~~v~~~~~s~-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 65 QVDSKFNDLDWSH-NNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCSSCEEEEEECS-SSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred ecCCceEEEEECC-CCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 5889999999999 667899999999999999977 4588889999999999999998 899999999999999999
Q ss_pred CCCe------EEEE---EcCCCCCeEEEEEeCC-CCEEEEEECCCcEEEEECCCCeEEEEEecC------CCCeEEEEEc
Q 003459 89 EEAK------IVRT---LTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGH------TRGVNAIRFT 152 (818)
Q Consensus 89 ~t~~------~v~~---l~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h------~~~V~~l~fs 152 (818)
.+++ .... +..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+..| ...|.+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC
Confidence 9876 3332 3678899999999999 789999999999999999999999998876 7889999999
Q ss_pred CCC-CEEEEEECCC---eEEEEECCCC-eEEEEEe-cCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCeEEEEeCC
Q 003459 153 PDG-RWVVSGGEDN---TVKLWDLTAG-KLLHDFK-CHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETFELIGSAGP 225 (818)
Q Consensus 153 pdg-~~L~sgs~Dg---~I~IwDl~t~-~~i~~~~-~h~~~I~sv~fsp-dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~ 225 (818)
|++ .+|++++.|+ .|++||++++ ..+..+. +|...|.+++|+| ++.+|++++.||.|++||+++++.+..+..
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~ 303 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA 303 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence 997 6899999998 9999999986 6677777 8999999999999 899999999999999999999999999999
Q ss_pred CCCCeeEEEEeCCC-CEEEEEECC-CEEEEEecCCceeccccc-----------------------------------cc
Q 003459 226 ETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPIRCHDAVDV-----------------------------------GW 268 (818)
Q Consensus 226 ~~~~I~sl~fspdg-~~Lasgs~d-~I~Vwd~~~~~~~~~~~~-----------------------------------~~ 268 (818)
|...|.+++|+|++ .+|++++.+ .+++|++........... ..
T Consensus 304 ~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (416)
T 2pm9_A 304 RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYG 383 (416)
T ss_dssp SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTC
T ss_pred CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCcccc
Confidence 99999999999999 899988766 599999987654322100 12
Q ss_pred cce-eeeeecCCCEEEEEEcCCeEEEEEecCC
Q 003459 269 SRL-SDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 269 ~~v-~~l~~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
..+ ...+.++|++|++++.|+.|+||++.+.
T Consensus 384 ~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 384 EPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 233 3334589999999999999999998865
No 40
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-33 Score=302.64 Aligned_cols=247 Identities=19% Similarity=0.324 Sum_probs=216.1
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC--CceEEEecCCCCCeEEEEEcCC--CCEEEEEECCCeEEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK--PNAILSLSGHTSGIDSVSFDSS--EVLVAAGAASGTIKL 85 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~--~~~i~~l~~h~~~V~~l~fspd--g~~Lasgs~DG~I~I 85 (818)
..+.+|.+.|++++|+| ++++|++|+.|++|+|||+.. .+.+..+.+|...|.+++|+++ +++|++|+.||+|++
T Consensus 3 ~~~~~h~~~V~~~~~s~-~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDY-YGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EECCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eeccCCcCceEEEEECC-CCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 45789999999999999 677899999999999999964 4678899999999999999863 899999999999999
Q ss_pred EECCCCe--EEEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCC-----
Q 003459 86 WDLEEAK--IVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPD----- 154 (818)
Q Consensus 86 WDl~t~~--~v~~l~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~~--~i~~l~~h~~~V~~l~fspd----- 154 (818)
||+.+++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++.+. ....+.+|...|.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9998874 56678889999999999997 8899999999999999998763 24567889999999999997
Q ss_pred --------CCEEEEEECCCeEEEEECCCCe----EEEEEecCCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCe-
Q 003459 155 --------GRWVVSGGEDNTVKLWDLTAGK----LLHDFKCHEGQIQCIDFHPHE---FLLATGSADRTVKFWDLETFE- 218 (818)
Q Consensus 155 --------g~~L~sgs~Dg~I~IwDl~t~~----~i~~~~~h~~~I~sv~fspdg---~~Lasgs~Dg~I~IwDl~t~~- 218 (818)
+++|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ .+|++++.|++|++||+++..
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~ 241 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQG 241 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCC
Confidence 5799999999999999998765 667788999999999999984 899999999999999998642
Q ss_pred --EEEEe--CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003459 219 --LIGSA--GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 219 --~i~~~--~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (818)
....+ ..+...|.+++|+|+|++|++++.+ .++||+...
T Consensus 242 ~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred ccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 12223 4677889999999999999988776 599999863
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.8e-33 Score=306.34 Aligned_cols=247 Identities=26% Similarity=0.470 Sum_probs=227.2
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC------ceEEEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP------NAILSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~------~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (818)
.+...+..|...|.+++|+| ++.+|++|+.|+.+++|++... .....+.+|...|.+++|++++.+|++++.|
T Consensus 97 ~~~~~~~~~~~~v~~~~~sp-~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D 175 (354)
T 2pbi_B 97 NKEHAVTMPCTWVMACAYAP-SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGD 175 (354)
T ss_dssp CEEEEEECSSSCCCEEEECT-TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETT
T ss_pred CcceEEecCCCCEEEEEECC-CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCC
Confidence 35567788999999999999 6778999999999999998543 3456777899999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeC--CCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L 158 (818)
|+|++||+++++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||+++++++..+.+|...|.+++|+|++.+|
T Consensus 176 ~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 255 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAF 255 (354)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEE
Confidence 9999999999999999999999999999987 46899999999999999999999999999999999999999999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003459 159 VSGGEDNTVKLWDLTAGKLLHDFKCH--EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h--~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fs 236 (818)
++|+.|+.|++||++.++.+..+..+ ...+.+++|+|++.+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 256 ~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s 335 (354)
T 2pbi_B 256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335 (354)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC
T ss_pred EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC
Confidence 99999999999999999888777643 3478999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCC-EEEEE
Q 003459 237 PDGRTLLCGLHES-LKVFS 254 (818)
Q Consensus 237 pdg~~Lasgs~d~-I~Vwd 254 (818)
|||++|++|+.|+ ++||+
T Consensus 336 pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEcCCCCEEecC
Confidence 9999999998774 89984
No 42
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=9.6e-33 Score=296.81 Aligned_cols=258 Identities=25% Similarity=0.487 Sum_probs=231.9
Q ss_pred CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEE
Q 003459 49 PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128 (818)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~Iw 128 (818)
......+.+|...|.+++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+|++++|++|+.||.|++|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw 92 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW 92 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCe
Q 003459 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRT 208 (818)
Q Consensus 129 Dl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~ 208 (818)
|+++++++..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..|...|.+++|+|++.+|++++.||.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGL 172 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeC-CCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccc----eeeeeecCCCEE
Q 003459 209 VKFWDLETFELIGSAG-PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSR----LSDLNVHEGKLL 282 (818)
Q Consensus 209 I~IwDl~t~~~i~~~~-~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~----v~~l~~~~g~lL 282 (818)
|++||+++++.+..+. .+...+..++|+|++++|++++.+ .+++||+...++...+..+... ...+...++.+|
T Consensus 173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence 9999999998887764 456689999999999999998876 5999999988877665443322 223334678999
Q ss_pred EEEEcCCeEEEEEecCCCceeeee
Q 003459 283 GCSYNQSCVGVWVVDISRIEPYTI 306 (818)
Q Consensus 283 atg~~Dg~V~IWdvd~~~~~~~~~ 306 (818)
++|+.||.|++||+..++......
T Consensus 253 ~sg~~dg~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp EECCTTSCEEEEETTTCCEEEEEC
T ss_pred EEECCCCEEEEEECCCchhhhhhh
Confidence 999999999999999887655433
No 43
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.7e-33 Score=309.49 Aligned_cols=290 Identities=19% Similarity=0.365 Sum_probs=247.4
Q ss_pred eEEEEecCCCCEE--EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-CCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 8 KLQEFVAHSSTVN--CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-HTSGIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 8 kl~~~~~H~~~V~--~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~-h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
++....+|...+. +++|++ + .+++++.||.|++|++.+++....+.. |...|.+++|+|++.+|++|+.||.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~s~--~-~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 83 RVLDAPGIIDDYYLNLLDWSN--L-NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVD 159 (401)
T ss_dssp EEEECTTCCCCTTCBCEEECT--T-SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred eeeeCCCCcCCceEEEEeecC--C-CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEE
Confidence 3445557776644 455553 3 377788999999999999998887775 889999999999999999999999999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003459 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~-~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~ 163 (818)
+||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++||++ ....+..+.+|...|.+++|+|++++|++|+.
T Consensus 160 iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred EEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 99999999999999999999999995 6799999999999999999 56778889999999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCC-CEEEEEe--CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003459 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE-FLLATGS--ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg-~~Lasgs--~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~ 240 (818)
||.|++||+++++.+..+..|...|.+++|+|++ .++++|+ .|+.|++||+.+++.+..+. +...|.+++|+|+|+
T Consensus 238 d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~ 316 (401)
T 4aez_A 238 DNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSK 316 (401)
T ss_dssp TSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSS
T ss_pred CCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCC
Confidence 9999999999999999999999999999999975 5666665 79999999999999988885 457899999999999
Q ss_pred EEEEEE---CCCEEEEEecCCceecc--ccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 241 TLLCGL---HESLKVFSWEPIRCHDA--VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 241 ~Lasgs---~d~I~Vwd~~~~~~~~~--~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
+|++++ ++.+++|++........ +..+...+..+.+ +++++|++++.||.|++|++..++...
T Consensus 317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred eEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 999854 45699999998665544 3345555666654 789999999999999999998887544
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.1e-34 Score=326.17 Aligned_cols=290 Identities=16% Similarity=0.214 Sum_probs=234.6
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce--EEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--ILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLW 86 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~--i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IW 86 (818)
....+|...|+||+|+|.++.+||+|+.||.|+|||+.+++. ...+.+|.+.|++|+|+| ++.+|++|+.||+|++|
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw 192 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ 192 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence 356789999999999998888999999999999999976654 445568999999999998 68999999999999999
Q ss_pred ECCCCeEEEEEcC--CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEEC
Q 003459 87 DLEEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGGE 163 (818)
Q Consensus 87 Dl~t~~~v~~l~~--h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~-~L~sgs~ 163 (818)
|++++........ +...+.+++|+|++.+|++|+.||.|++||++. +.+..+.+|...|.+++|+|++. +|++|+.
T Consensus 193 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~ 271 (435)
T 4e54_B 193 DFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASV 271 (435)
T ss_dssp ETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEET
T ss_pred eccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecC
Confidence 9987655444433 334678999999999999999999999999864 56778889999999999999876 7889999
Q ss_pred CCeEEEEECCCCeEEEE---EecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC------CeeEEE
Q 003459 164 DNTVKLWDLTAGKLLHD---FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS------GVRCLT 234 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~~---~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~------~I~sl~ 234 (818)
|+.|++||+++++.... ..+|...|++++|+|+|.+|++++.||.|+|||+.+++....+..|.. .+....
T Consensus 272 d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (435)
T 4e54_B 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAA 351 (435)
T ss_dssp TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCE
T ss_pred cceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEE
Confidence 99999999988664433 346889999999999999999999999999999999887777655432 234567
Q ss_pred EeCCCCEEEEEEC-------------CCEEEEEecCCceecccc-ccccceeee--eecCCCEEEEEEcCCeEEEEEecC
Q 003459 235 FNPDGRTLLCGLH-------------ESLKVFSWEPIRCHDAVD-VGWSRLSDL--NVHEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 235 fspdg~~Lasgs~-------------d~I~Vwd~~~~~~~~~~~-~~~~~v~~l--~~~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
|+|++.+++++.. +.|++|+..+++....+. .+...+..+ +.++|++|++|+ |+.|+||++..
T Consensus 352 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~ 430 (435)
T 4e54_B 352 WHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQE 430 (435)
T ss_dssp ECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-
T ss_pred EcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCc
Confidence 8888887777642 249999999888766543 344444444 347899998875 88999999988
Q ss_pred CCc
Q 003459 299 SRI 301 (818)
Q Consensus 299 ~~~ 301 (818)
++.
T Consensus 431 gk~ 433 (435)
T 4e54_B 431 ART 433 (435)
T ss_dssp ---
T ss_pred Cee
Confidence 764
No 45
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.6e-34 Score=319.84 Aligned_cols=289 Identities=13% Similarity=0.249 Sum_probs=240.4
Q ss_pred cceeEEEE-ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC---Cc---eEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003459 5 RAYKLQEF-VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK---PN---AILSLSGHTSGIDSVSFDSSEVLVAAG 77 (818)
Q Consensus 5 r~~kl~~~-~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~---~~---~i~~l~~h~~~V~~l~fspdg~~Lasg 77 (818)
+...+..+ .+|.+.|++++|+|.++.+|++|+.||.|++||+.+ +. ....+ +|...|.+++|+|++.+|++|
T Consensus 51 ~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 51 RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEE
T ss_pred cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEE
Confidence 34567788 899999999999995567899999999999999865 32 23333 499999999999999999999
Q ss_pred ECCCeEEEEECC---CCeEEEEEcC------------CCCCeEEEE--EeCCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 003459 78 AASGTIKLWDLE---EAKIVRTLTG------------HRSNCISVD--FHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK 140 (818)
Q Consensus 78 s~DG~I~IWDl~---t~~~v~~l~~------------h~~~V~sv~--fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~ 140 (818)
+.||.|++||++ +++....+.+ +...+.++. +++++.+|++|+.||.|++||+++++++..+.
T Consensus 130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~ 209 (437)
T 3gre_A 130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE 209 (437)
T ss_dssp ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence 999999999995 5544443332 455666766 56789999999999999999999999999999
Q ss_pred c--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEeC----CCCEEEEEeCCCeEEEEE
Q 003459 141 G--HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHP----HEFLLATGSADRTVKFWD 213 (818)
Q Consensus 141 ~--h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sv~fsp----dg~~Lasgs~Dg~I~IwD 213 (818)
. |...|.+++|+|++++|++|+.||.|++||+++++.+..+. .|...|.+++|+| ++.+|++|+.||.|++||
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd 289 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN 289 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence 8 88999999999999999999999999999999999999886 6788999996665 578999999999999999
Q ss_pred CCCCeEEEEeCC--------------------------CCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccc
Q 003459 214 LETFELIGSAGP--------------------------ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDV 266 (818)
Q Consensus 214 l~t~~~i~~~~~--------------------------~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~ 266 (818)
+++++.+..+.. |...|++++|+ ++.+|++|+.+ .|++|++...++...+..
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence 999998777653 44558899999 77889988755 699999998876554432
Q ss_pred -------------------------------------cccceeeeee-cC--CCEEEEEEcCCeEEEEE
Q 003459 267 -------------------------------------GWSRLSDLNV-HE--GKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 267 -------------------------------------~~~~v~~l~~-~~--g~lLatg~~Dg~V~IWd 295 (818)
+...+.++.+ ++ +.+|++|+.||.|+||.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 369 PSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp C--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 4455666554 33 77999999999999994
No 46
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.8e-32 Score=308.39 Aligned_cols=287 Identities=21% Similarity=0.396 Sum_probs=256.8
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEc--CCCCEEEEEECCCe
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFD--SSEVLVAAGAASGT 82 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fs--pdg~~Lasgs~DG~ 82 (818)
....+..+.+|.+.|++++|+|+ + +|++|+.||+|++||+.+++.+..+.+|...|.+++|+ +++.+|++|+.||.
T Consensus 151 ~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~ 228 (464)
T 3v7d_B 151 NKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSC
T ss_pred CCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCc
Confidence 34567788999999999999984 4 89999999999999999999999999999999999998 57889999999999
Q ss_pred EEEEECCCCe-----------------------EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 003459 83 IKLWDLEEAK-----------------------IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139 (818)
Q Consensus 83 I~IWDl~t~~-----------------------~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l 139 (818)
|++||+.++. .+..+.+|...+.++ ++++.+|++|+.||.|++||+++++++..+
T Consensus 229 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~ 306 (464)
T 3v7d_B 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 306 (464)
T ss_dssp EEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 9999998765 356778898888887 566899999999999999999999999999
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE
Q 003459 140 KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL 219 (818)
Q Consensus 140 ~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~ 219 (818)
.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|...|.++.|+ +.+|++++.||.|++||+.++..
T Consensus 307 ~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence 9999999999999999999999999999999999999999999999999999997 57999999999999999999887
Q ss_pred EEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceecc-ccccccceeeeeecCCCEEEEEEcCCeEEEEEecC
Q 003459 220 IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDA-VDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 220 i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~-~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
..... +...+..++|++++.+|++|+++.+++|++.+++.... ...+...+..+.+.++.++++++.||.+.+|.+|.
T Consensus 385 ~~~~~-~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ldf 463 (464)
T 3v7d_B 385 KFSYH-HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILDF 463 (464)
T ss_dssp EEEEE-CTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEEEC
T ss_pred eeeec-CCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEeec
Confidence 66653 55678889999999999999988899999999988764 45556778888888777788888899888887775
No 47
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-32 Score=334.56 Aligned_cols=295 Identities=20% Similarity=0.317 Sum_probs=267.0
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
....+.|.+|.+.|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp-~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~v 81 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHP-TEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred cccceeeecCCCceEEEEECC-CCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 345678899999999999999 6778999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcC-CCCEEEEEEC
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGE 163 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~ 163 (818)
||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++ .....+.+|...|.+++|+| ++..|++++.
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 161 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999987 77788899999999999999 8999999999
Q ss_pred CCeEEEEECCCCeEEEEEecCC-CCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003459 164 DNTVKLWDLTAGKLLHDFKCHE-GQIQCIDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~-~~I~sv~fsp--dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~ 240 (818)
||.|++||+.++.....+..+. ..+.+++|+| ++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|+|.
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 241 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSS
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCC
Confidence 9999999999888777777654 8899999999 899999999999999999999999999999999999999999999
Q ss_pred EEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCC-EEEEEEcCCeEEEEEecCCCc
Q 003459 241 TLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGK-LLGCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~-lLatg~~Dg~V~IWdvd~~~~ 301 (818)
+|++++.+ .+++|+..+.+....+..+...+..+.+ +++. ++++++.++.+.+|++.....
T Consensus 242 ~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 242 IIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP 305 (814)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCc
Confidence 99999865 6999999998888888777777777775 5665 234455577789998876553
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.5e-32 Score=306.90 Aligned_cols=238 Identities=24% Similarity=0.461 Sum_probs=218.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (818)
.|++++|+| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++|+.|++|++||+.+++....+
T Consensus 125 ~v~~v~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 125 YIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp BEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 499999999 6778999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEE-------ecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 98 TGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTY-------KGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (818)
Q Consensus 98 ~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~l-------~~h~~~V~~l~fspdg~~L~sgs~Dg~I~I 169 (818)
. +...+.+++|+| ++.+|++|+.||.|++||++++..+..+ .+|...|.+++|+|+|++|++|+.||.|++
T Consensus 204 ~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 204 S-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp E-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred E-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 7 567899999999 8999999999999999999999888776 578999999999999999999999999999
Q ss_pred EECCCC------------eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC
Q 003459 170 WDLTAG------------KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP 237 (818)
Q Consensus 170 wDl~t~------------~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fsp 237 (818)
||+++. .+...+.+|...|.+++|+|++.+|++|+.|+.|++||+.+++.+..+.+|...|.+++|++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~ 362 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECS
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecC
Confidence 999753 34567778999999999999999999999999999999999999999999999999999986
Q ss_pred ------CCCEEEEEECC-CEEEEEecC
Q 003459 238 ------DGRTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 238 ------dg~~Lasgs~d-~I~Vwd~~~ 257 (818)
++.+|++|+.| .++||++..
T Consensus 363 ~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 363 GSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CcCcCCCCCEEEEECCCCcEEECcccc
Confidence 68899998877 599999864
No 49
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5.6e-33 Score=298.49 Aligned_cols=285 Identities=20% Similarity=0.282 Sum_probs=246.2
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~ 93 (818)
.|.+.|.+++|+| ++++++++..++.+.+|............+|...|.+++|+|++++|++++ ||.|++||+.+++.
T Consensus 7 ~~~~~v~~~~~s~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 7 MGSKPAYSFHVTA-DGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEEECCEEEECS-SSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred ccCCceeEEEECC-CCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 3567899999999 567788887777777776655555555668999999999999999999998 99999999987642
Q ss_pred ---EEEEc--CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 94 ---VRTLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 94 ---v~~l~--~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~--~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
+..+. +|...|.+++|+|++++|++++.||.|++||+.+++ ....+..|...|.+++|+|++++|++++.||.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 164 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCc
Confidence 23333 789999999999999999999999999999999877 66778889999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
|++||+++++.+..+..|...|.+++|+|++.+|++++.||.|++||+++++.+..+. +...+.+++|+|++++|++++
T Consensus 165 v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~ 243 (337)
T 1gxr_A 165 IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM 243 (337)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc
Confidence 9999999999999999999999999999999999999999999999999999887764 567899999999999999988
Q ss_pred CC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCce
Q 003459 247 HE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
.+ .+++|++...+... +..+...+..+.+ +++++|++++.||.|++|++..++..
T Consensus 244 ~~~~i~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 244 ESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp TTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCcEEEEECCCCCeEE-EcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE
Confidence 65 69999998876643 3334455666654 68999999999999999999988765
No 50
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=319.52 Aligned_cols=285 Identities=19% Similarity=0.332 Sum_probs=250.6
Q ss_pred CCEEEEEEeeCCCcEEEEE----------eCCCeEEEEECCCCc---eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 17 STVNCLKIGRKSSRVLVTG----------GEDHKVNLWAIGKPN---AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTI 83 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatg----------s~Dg~V~lWdl~~~~---~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I 83 (818)
..|.+++|+|++..+|++| +.||.|++||+.++. .+..+ .|...|.+++|+|++.+|++|+.||.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeE
Confidence 4689999999666699999 899999999998775 33333 588999999999999999999999999
Q ss_pred EEEECCC----CeEEEEEcCCCCCeEEEEEeCC-CCEEEEEECCCcEEEEECCCCe------EEEE---EecCCCCeEEE
Q 003459 84 KLWDLEE----AKIVRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKG------CIHT---YKGHTRGVNAI 149 (818)
Q Consensus 84 ~IWDl~t----~~~v~~l~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~------~i~~---l~~h~~~V~~l 149 (818)
++||+.+ .+.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++ .... +..|...|.++
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 171 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEE
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEE
Confidence 9999987 4588889999999999999998 8899999999999999999876 3333 35788999999
Q ss_pred EEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEecC------CCCEEEEEEeCCC-CEEEEEeCCC---eEEEEECCCC-
Q 003459 150 RFTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCH------EGQIQCIDFHPHE-FLLATGSADR---TVKFWDLETF- 217 (818)
Q Consensus 150 ~fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h------~~~I~sv~fspdg-~~Lasgs~Dg---~I~IwDl~t~- 217 (818)
+|+|+ +.+|++++.||.|++||+++++.+..+..+ ...|.+++|+|++ .+|++++.|+ .|++||++++
T Consensus 172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN 251 (416)
T ss_dssp EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence 99998 789999999999999999999999998876 7889999999997 6999999998 9999999986
Q ss_pred eEEEEeC-CCCCCeeEEEEeC-CCCEEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCC-CEEEEEEcCCeEE
Q 003459 218 ELIGSAG-PETSGVRCLTFNP-DGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEG-KLLGCSYNQSCVG 292 (818)
Q Consensus 218 ~~i~~~~-~~~~~I~sl~fsp-dg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g-~lLatg~~Dg~V~ 292 (818)
+.+..+. .|...|.+++|+| ++.+|++++.+ .+++|++...+....+..+...+..+.+ +++ .+|++++.|+.|+
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~ 331 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIE 331 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEE
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEE
Confidence 5666777 8999999999999 89999998866 5999999999888887777777777766 566 8999999999999
Q ss_pred EEEecCCCce
Q 003459 293 VWVVDISRIE 302 (818)
Q Consensus 293 IWdvd~~~~~ 302 (818)
+|++......
T Consensus 332 iw~~~~~~~~ 341 (416)
T 2pm9_A 332 VQTLQNLTNT 341 (416)
T ss_dssp EEESCCCCCS
T ss_pred EEEccCCCCC
Confidence 9999877643
No 51
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.3e-32 Score=310.94 Aligned_cols=279 Identities=22% Similarity=0.489 Sum_probs=246.4
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
....+|...|.|++| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++| ++++|++|+.||.|++||+.
T Consensus 127 ~~~~~~~~~v~~~~~---d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 127 HCRSETSKGVYCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp ECCCSSCCCEEEEEC---CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred ecccCCCCcEEEEEE---CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 334567778999988 4678999999999999999999999999999999999999 78899999999999999999
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE---EEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI---HTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 90 t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i---~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
+++.+..+.+|...|.+++|+ +.++++|+.||.|++||+.++..+ ..+.+|...|.+++| ++++|++|+.||.
T Consensus 202 ~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~ 277 (435)
T 1p22_A 202 TGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRT 277 (435)
T ss_dssp SCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred CCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCe
Confidence 999999999999999999997 469999999999999999887654 677889999999999 6889999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
|++||+++++.+..+.+|...|.++.|+ +.+|++|+.||.|++||+++++.+..+..|...|.+++| ++.+|++|+
T Consensus 278 i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~ 353 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGA 353 (435)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEE
T ss_pred EEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEe
Confidence 9999999999999999999999999994 679999999999999999999999999999999999999 788999888
Q ss_pred CC-CEEEEEecCCc---------eeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCce
Q 003459 247 HE-SLKVFSWEPIR---------CHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 247 ~d-~I~Vwd~~~~~---------~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
.+ .|++||+.... +...+..+...+..+.+ ++.+|++++.||.|++|++......
T Consensus 354 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 354 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-CSSCEEECCSSSEEEEEC-------
T ss_pred CCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-CCCEEEEEeCCCEEEEEECCCCCCc
Confidence 76 59999997655 56666667777777777 8899999999999999999876543
No 52
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.1e-32 Score=295.41 Aligned_cols=251 Identities=19% Similarity=0.282 Sum_probs=223.9
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEE
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIK 84 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~----~~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~ 84 (818)
.+.+|.+.|++++|+| ++.+|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++.+|++|+.||.|+
T Consensus 6 ~~~gH~~~v~~~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp EECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cCcccccceeEEEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 4679999999999999 6778999999999999999866 46677889999999999999 699999999999999
Q ss_pred EEECCCC---------eEEEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCCeEEEEEe-------------
Q 003459 85 LWDLEEA---------KIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKGCIHTYK------------- 140 (818)
Q Consensus 85 IWDl~t~---------~~v~~l~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~~~i~~l~------------- 140 (818)
+||+.++ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999887 678888999999999999999 9999999999999999998876443322
Q ss_pred cCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCeE--EEEEecCCCCEEEEEEeCCC----CEEEEEeCCCeEEE
Q 003459 141 GHTRGVNAIRFTPD---GRWVVSGGEDNTVKLWDLTAGKL--LHDFKCHEGQIQCIDFHPHE----FLLATGSADRTVKF 211 (818)
Q Consensus 141 ~h~~~V~~l~fspd---g~~L~sgs~Dg~I~IwDl~t~~~--i~~~~~h~~~I~sv~fspdg----~~Lasgs~Dg~I~I 211 (818)
.|...+.+++|+|+ +.+|++++.++.+.+|+...++. +..+.+|...|++++|+|++ .+|++|+.||.|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 57788999999997 99999999999999999888765 67777899999999999998 89999999999999
Q ss_pred EECCCC----------------------------------------------eEEEEeCCCCCCeeEEEEeCCCCEEEEE
Q 003459 212 WDLETF----------------------------------------------ELIGSAGPETSGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 212 wDl~t~----------------------------------------------~~i~~~~~~~~~I~sl~fspdg~~Lasg 245 (818)
||++.+ +.+..+..|...|++++|+|+|++|++|
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 999864 6777788899999999999999999999
Q ss_pred ECC-CEEEEEecCCceec
Q 003459 246 LHE-SLKVFSWEPIRCHD 262 (818)
Q Consensus 246 s~d-~I~Vwd~~~~~~~~ 262 (818)
+.+ .|+||++...+...
T Consensus 325 ~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 325 GDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp ETTSCEEEEEECTTSCEE
T ss_pred cCCCcEEEEecCcCcchh
Confidence 876 59999998765443
No 53
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=301.78 Aligned_cols=295 Identities=16% Similarity=0.271 Sum_probs=247.3
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-------------CCCCCeEEEEEcC-CCCE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-------------GHTSGIDSVSFDS-SEVL 73 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~-------------~h~~~V~~l~fsp-dg~~ 73 (818)
....+.+|.+.|++++|+|.++.+|++|+.||.|++||+.++.....+. +|...|.+++|+| ++.+
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 114 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence 3456788999999999999556789999999999999998776554432 5999999999999 7789
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC---CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE
Q 003459 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG---EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR 150 (818)
Q Consensus 74 Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg---~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~ 150 (818)
|++++.||.|++||+.+++....+. +...+.++.|++.+ .++++++.||.|++||+++++.+..+..|...|.+++
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 115 FTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 9999999999999999999988887 77889999999854 4999999999999999999999999999999999999
Q ss_pred EcCCCC-EEEEEECCCeEEEEECCCCe-EEEEE---------------ecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003459 151 FTPDGR-WVVSGGEDNTVKLWDLTAGK-LLHDF---------------KCHEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (818)
Q Consensus 151 fspdg~-~L~sgs~Dg~I~IwDl~t~~-~i~~~---------------~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwD 213 (818)
|+|++. .|++++.||.|++||++++. .+..+ ..|...|.+++|+|++.+|++++.||.|++||
T Consensus 194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 273 (408)
T 4a11_B 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273 (408)
T ss_dssp ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEE
Confidence 999998 58999999999999998765 34444 46788999999999999999999999999999
Q ss_pred CCCCeEEEEeCCC------CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccceeeeee-cCCCEEEEEE
Q 003459 214 LETFELIGSAGPE------TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSY 286 (818)
Q Consensus 214 l~t~~~i~~~~~~------~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~ 286 (818)
+.+++.......+ ............+.+++++.++.+++|++...+....+..+...+..+.+ +++++|++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 353 (408)
T 4a11_B 274 SSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353 (408)
T ss_dssp TTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEEC
Confidence 9988765443322 11223333444566777777778999999999998888877777877775 7889999999
Q ss_pred cCCeEEEEEecCCCcee
Q 003459 287 NQSCVGVWVVDISRIEP 303 (818)
Q Consensus 287 ~Dg~V~IWdvd~~~~~~ 303 (818)
.||.|++|+++..+..+
T Consensus 354 ~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 354 RDCNILAWVPSLYEPVP 370 (408)
T ss_dssp TTSCEEEEEECC-----
T ss_pred CCCeEEEEeCCCCCccC
Confidence 99999999999887544
No 54
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-32 Score=298.35 Aligned_cols=247 Identities=19% Similarity=0.350 Sum_probs=205.4
Q ss_pred EEEE-ec-CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-------CceEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003459 9 LQEF-VA-HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-------PNAILSLSGHTSGIDSVSFDSSEVLVAAGAA 79 (818)
Q Consensus 9 l~~~-~~-H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~-------~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~ 79 (818)
+..+ .+ |...|++++|+| ++.+|++|+.|++|++|++.. .+.+..+.+|...|.+++|+|++++|++|+.
T Consensus 49 ~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~ 127 (330)
T 2hes_X 49 IDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127 (330)
T ss_dssp EEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET
T ss_pred EEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 3445 34 999999999999 677899999999999999842 3567788999999999999999999999999
Q ss_pred CCeEEEEECCC----CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCeEEEEEcC
Q 003459 80 SGTIKLWDLEE----AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK--GCIHTYKGHTRGVNAIRFTP 153 (818)
Q Consensus 80 DG~I~IWDl~t----~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~--~~i~~l~~h~~~V~~l~fsp 153 (818)
|++|++||+.. .+.+..+.+|...|.+++|+|++.+|++|+.|+.|++||..++ +++..+.+|...|.+++|+|
T Consensus 128 D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~ 207 (330)
T 2hes_X 128 DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK 207 (330)
T ss_dssp TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC
T ss_pred CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecC
Confidence 99999999943 3577889999999999999999999999999999999998876 67889999999999999999
Q ss_pred C--CCEEEEEECCCeEEEEECCCC--------eEEEEEec-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe--EE
Q 003459 154 D--GRWVVSGGEDNTVKLWDLTAG--------KLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE--LI 220 (818)
Q Consensus 154 d--g~~L~sgs~Dg~I~IwDl~t~--------~~i~~~~~-h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~--~i 220 (818)
+ +.+|++|+.|+.|++||+..+ .....+.. |...|++++|++++ +|++++.||.|++||..+++ .+
T Consensus 208 ~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~ 286 (330)
T 2hes_X 208 TEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVF 286 (330)
T ss_dssp SSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEE
T ss_pred CCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEE
Confidence 8 779999999999999998754 34445554 88999999999765 89999999999999998874 33
Q ss_pred EE-eCCCCC-CeeEEEEeC--CCCEEEEEECCC-EEEEEecC
Q 003459 221 GS-AGPETS-GVRCLTFNP--DGRTLLCGLHES-LKVFSWEP 257 (818)
Q Consensus 221 ~~-~~~~~~-~I~sl~fsp--dg~~Lasgs~d~-I~Vwd~~~ 257 (818)
.. ...|.. .|.+++|+| ++++|++|+.|+ ++||+++.
T Consensus 287 ~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 287 AKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 33 356766 899999999 789999988774 99999764
No 55
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=299.70 Aligned_cols=249 Identities=22% Similarity=0.390 Sum_probs=215.4
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~--~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
..+|...|.+++|+| ++++|++|+.|+.|++|++..+ +++..+.+|...|.+++|+|++++|++|+.|++|++||+.
T Consensus 57 ~~~h~~~v~~~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp CSSCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred ccccCCcEEEEEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 368999999999999 6778999999999999998766 4677889999999999999999999999999999999998
Q ss_pred CC---eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECC
Q 003459 90 EA---KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 90 t~---~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~--~i~~l~~h~~~V~~l~fspdg~~L~sgs~D 164 (818)
++ ..+..+.+|...|.+++|+|++.+|++|+.|+.|++||++.+. +...+.+|...|.+++|+|+|++|++++.|
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCC
Confidence 75 4567788999999999999999999999999999999998875 457888999999999999999999999999
Q ss_pred CeEEEEECCCC---------------eEEEEEec-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe---------E
Q 003459 165 NTVKLWDLTAG---------------KLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE---------L 219 (818)
Q Consensus 165 g~I~IwDl~t~---------------~~i~~~~~-h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~---------~ 219 (818)
+.|++||.... +++..+.+ |...|++++|+|++..|++++.|+.|++|+..... .
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 99999996321 34445554 78899999999999999999999999999987542 1
Q ss_pred EEEeCCCCCCeeEEEEeCCC-CEEEEEECC-CEEEEEecCCcee
Q 003459 220 IGSAGPETSGVRCLTFNPDG-RTLLCGLHE-SLKVFSWEPIRCH 261 (818)
Q Consensus 220 i~~~~~~~~~I~sl~fspdg-~~Lasgs~d-~I~Vwd~~~~~~~ 261 (818)
......|...|.+++|+|++ .+|++|+.| .|++|+....+..
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 22346789999999999998 489888766 6999999876643
No 56
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.1e-32 Score=319.69 Aligned_cols=288 Identities=12% Similarity=0.217 Sum_probs=258.9
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCC-eEEEEEcC--CCCEEEEEECCCeEEE
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSG-IDSVSFDS--SEVLVAAGAASGTIKL 85 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~----~~i~~l~~h~~~-V~~l~fsp--dg~~Lasgs~DG~I~I 85 (818)
..|.+.|.+++|+| ++++|++++ ++.|.+|++.++ +....+.+|... |.+++|+| ++++|++|+.||.|++
T Consensus 15 ~~~~~~v~~~~~sp-dg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 15 STQRNFTTHLSYDP-TTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCTTCCCCCEEET-TTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred CCccCceeEEEECC-CCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 46889999999999 667788887 789999999988 899999999999 99999999 9999999999999999
Q ss_pred EECCCC--------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECC----CcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003459 86 WDLEEA--------KIVRTLTGHRSNCISVDFHPFGEFFASGSLD----TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (818)
Q Consensus 86 WDl~t~--------~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D----g~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp 153 (818)
||+.++ +....+..|...|.+++|+|++++|++++.+ +.|++|| .++.+..+.+|...|.+++|+|
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~ 170 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQ 170 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECS
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECC
Confidence 999754 7778888999999999999999999999988 6888888 5678889999999999999999
Q ss_pred CCC-EEEEEECCCeEEEEECCCCeEEEEEecCCC---CEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeEEEEe-C---
Q 003459 154 DGR-WVVSGGEDNTVKLWDLTAGKLLHDFKCHEG---QIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSA-G--- 224 (818)
Q Consensus 154 dg~-~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~---~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~i~~~-~--- 224 (818)
++. .|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ +.+|++++.||.|++||+++++.+..+ .
T Consensus 171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 250 (615)
T 1pgu_A 171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE 250 (615)
T ss_dssp SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccc
Confidence 998 899999999999999999999999999998 9999999999 999999999999999999999999988 6
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceecccccc----ccceeeeeecCCCEEEEEEcCCeEEEEEecCC
Q 003459 225 PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG----WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~----~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
.|...|.+++|+ ++.+|++++.+ .+++|++...++...+..+ ...+..+.++++.++++++.||.|++|++..+
T Consensus 251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEE
T ss_pred ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCC
Confidence 889999999999 99999999876 5999999988887766554 23445555569999999999999999999876
Q ss_pred Cceeee
Q 003459 300 RIEPYT 305 (818)
Q Consensus 300 ~~~~~~ 305 (818)
+.....
T Consensus 330 ~~~~~~ 335 (615)
T 1pgu_A 330 EVLKTI 335 (615)
T ss_dssp EEEEEE
T ss_pred cEEEEE
Confidence 544433
No 57
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.3e-31 Score=303.21 Aligned_cols=282 Identities=26% Similarity=0.516 Sum_probs=254.8
Q ss_pred eEEEEecCCCCE-EEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 8 KLQEFVAHSSTV-NCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 8 kl~~~~~H~~~V-~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
....+.+|.+.| .|+.+ ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++|
T Consensus 110 ~~~~l~~h~~~v~~~~~~---~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vw 184 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVW 184 (445)
T ss_dssp CCEEEECSTTSCEEEEEE---ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred eeEEecccCCCcEEEEEE---cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEE
Confidence 456789999975 66555 35789999999999999999999999999999999999997 6699999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
|+.+++.+..+.+|...|.++.|+ ++++++|+.||.|++||+.+++.+..+.+|...|.+++| ++.++++|+.||.
T Consensus 185 d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~ 260 (445)
T 2ovr_B 185 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFM 260 (445)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSC
T ss_pred ECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCE
Confidence 999999999999999999999996 678999999999999999999999999999999999999 6889999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
|++||+++++.+..+.+|...|.++.| ++.++++|+.||.|++||+++++.+..+..|...+.++.++ +.+|++|+
T Consensus 261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~ 336 (445)
T 2ovr_B 261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN 336 (445)
T ss_dssp EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEE
T ss_pred EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEe
Confidence 999999999999999999999999999 78899999999999999999999999999999999988875 66888887
Q ss_pred CC-CEEEEEecCCceeccccc---cccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 247 HE-SLKVFSWEPIRCHDAVDV---GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~~~~~---~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
.+ .+++||+..+++...+.. +...+..+.+ ++++|++|+.||.|++|++..++...
T Consensus 337 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 337 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF-NKNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE-CSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEE-CCCEEEEEeCCCeEEEEECCCCceee
Confidence 66 699999998888776654 5566777766 57999999999999999999887654
No 58
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.9e-33 Score=308.21 Aligned_cols=245 Identities=18% Similarity=0.256 Sum_probs=211.0
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE----EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL----SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~----~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
...+|...|++++|+|+ +. +++++.||+|+|||+.+++... ...+|...|.+++|+|++++|++|+.||.|++|
T Consensus 89 ~~~~~~~~V~~~~~s~d-~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iw 166 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSE-KG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVW 166 (357)
T ss_dssp EEEECSSCEEEEEEETT-TE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEE
T ss_pred ccCCCCCCEEEEEEcCC-CC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 45579999999999994 44 5677889999999998776542 345899999999999999999999999999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCC-CCEEEEEE
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPD-GRWVVSGG 162 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l~--~h~~~V~~l~fspd-g~~L~sgs 162 (818)
|+.+++.+..+.+|...|.+++|++++. ++++++.||.|++||+++++++..+. .|...+.+++|+|+ +.+|++|+
T Consensus 167 d~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~ 246 (357)
T 4g56_B 167 DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD 246 (357)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee
Confidence 9999999999999999999999999885 78999999999999999988766554 46678999999997 56899999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeC-CCC
Q 003459 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGR 240 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg-~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fsp-dg~ 240 (818)
.|+.|++||+++++.+..+..|...|++++|+|++ .+|++|+.|++|+|||+++++++..+ .|...|++++|+| |+.
T Consensus 247 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~ 325 (357)
T 4g56_B 247 ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHS 325 (357)
T ss_dssp SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTT
T ss_pred cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCC
Confidence 99999999999999999999999999999999986 68999999999999999999887655 7899999999998 799
Q ss_pred EEEEEECC-CEEEEEecCC
Q 003459 241 TLLCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~ 258 (818)
+|++++.| .|++|++...
T Consensus 326 ~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 326 KFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEEEETTSCEEEEECC--
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 99988766 6999998653
No 59
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.2e-32 Score=298.15 Aligned_cols=246 Identities=24% Similarity=0.463 Sum_probs=212.6
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
....+.+|...|++++|+| ++.++++|+.|++|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 68 ~~~~l~~h~~~V~~~~~~~-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd 146 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQ-ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN 146 (343)
T ss_dssp EEEEECCCSSCEEEEEECS-STTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEE
T ss_pred ccchhccCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEe
Confidence 4567899999999999999 677899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEc---CCCCCeEEEEEeCCC----------CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC
Q 003459 88 LEEAKIVRTLT---GHRSNCISVDFHPFG----------EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD 154 (818)
Q Consensus 88 l~t~~~v~~l~---~h~~~V~sv~fspdg----------~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd 154 (818)
+... ....+. +|...|.+++|+|++ .+|++++.||.|++|| ...+....+.+|...|.+++|+|+
T Consensus 147 ~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 147 ILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp SSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTT
T ss_pred ccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCC
Confidence 9844 333333 688899999999987 7999999999999999 456778889999999999999999
Q ss_pred CCEEEEEECCCeEEEEECCC-CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE--EeC-------
Q 003459 155 GRWVVSGGEDNTVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG--SAG------- 224 (818)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t-~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~--~~~------- 224 (818)
|++|++|+.||.|++||+.. ......+. +...|.+++|+|++.++++++ |+.|++||+.+++... .+.
T Consensus 225 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T 2xzm_R 225 GKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKA 302 (343)
T ss_dssp SSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGB
T ss_pred CCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhh
Confidence 99999999999999999954 44444443 456799999999998887664 7889999998765432 333
Q ss_pred ----CCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC
Q 003459 225 ----PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 225 ----~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (818)
+|...|.+++|+|+|++|++|+.+ .|++|+++++
T Consensus 303 ~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 303 EGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp TTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 567789999999999999999877 5999998653
No 60
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.9e-33 Score=298.48 Aligned_cols=277 Identities=13% Similarity=0.068 Sum_probs=242.8
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc---eEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEE
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN---AILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWD 87 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~---~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWD 87 (818)
..+|.+.|++++|+| ++.+|++|+.||.|++|++.++. ....+.+|...|.+++|+|+++ +|++|+.||.|++||
T Consensus 7 ~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 468999999999999 66789999999999999998776 3455668999999999999999 999999999999999
Q ss_pred C-CCCeEEEEEcC--CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC---------CeEEEEEecCCCCeEEEEEcCCC
Q 003459 88 L-EEAKIVRTLTG--HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---------KGCIHTYKGHTRGVNAIRFTPDG 155 (818)
Q Consensus 88 l-~t~~~v~~l~~--h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~---------~~~i~~l~~h~~~V~~l~fspdg 155 (818)
+ .+++. ..+.+ |...|.+++|+| +.+|++++.|+.|++||+++ ++++..+. |...|.+++|+|++
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR 162 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc
Confidence 9 87765 67788 999999999999 99999999999999999987 66666666 88999999999887
Q ss_pred CEEEEEECCCeEEEEECCC-Ce--EEEEEecCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCC------eEEEEeCC
Q 003459 156 RWVVSGGEDNTVKLWDLTA-GK--LLHDFKCHEGQIQCIDFHP-HEFLLATGSADRTVKFWDLETF------ELIGSAGP 225 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t-~~--~i~~~~~h~~~I~sv~fsp-dg~~Lasgs~Dg~I~IwDl~t~------~~i~~~~~ 225 (818)
+++++.|+.|++||+++ +. .......|...+.+++|+| ++.+|++++.||.|++||++.. +.+..+..
T Consensus 163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence 99999999999999998 54 3334446788999999999 9999999999999999999876 66666766
Q ss_pred CCC---------CeeEEEEeCCCCEEEEEECC-CEEEEEecCCceecccccc-ccceeeeeecCCCEEEEEEcCCe-EEE
Q 003459 226 ETS---------GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG-WSRLSDLNVHEGKLLGCSYNQSC-VGV 293 (818)
Q Consensus 226 ~~~---------~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~-~~~v~~l~~~~g~lLatg~~Dg~-V~I 293 (818)
|.. .|.+++|+|++++|++++.+ .+++||+..++....+..+ ...+..+. +++++|++++.||. .+.
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~-~~~~~l~s~s~Dg~~~~~ 319 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA-CSDNILCLATSDDTFKTN 319 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE-ECSSEEEEEEECTHHHHC
T ss_pred ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec-CCCCeEEEEecCCccccc
Confidence 654 89999999999999998876 6999999999988888777 77888888 99999999999998 444
Q ss_pred EE
Q 003459 294 WV 295 (818)
Q Consensus 294 Wd 295 (818)
|.
T Consensus 320 ~~ 321 (342)
T 1yfq_A 320 AA 321 (342)
T ss_dssp SS
T ss_pred cc
Confidence 44
No 61
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.6e-32 Score=306.32 Aligned_cols=279 Identities=16% Similarity=0.235 Sum_probs=234.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (818)
.+.+..|++ ++++|++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 99 ~~~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 99 YTAVDTAKL-QMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp EEEEEEECS-SSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred ceEEEEEec-CCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 344446777 6778999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec---CCCCeEEEE---------------------EcC
Q 003459 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG---HTRGVNAIR---------------------FTP 153 (818)
Q Consensus 98 ~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~---h~~~V~~l~---------------------fsp 153 (818)
.+|...|.+++|+|++.+|++++.||.|++||+++++.+..+.. |...+.+++ |+|
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 257 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT 257 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC
Confidence 99999999999999999999999999999999999999998875 334455544 578
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCeE-EEEeCC-CCCC
Q 003459 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEF-LLATGSADRTVKFWDLETFEL-IGSAGP-ETSG 229 (818)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sv~fspdg~-~Lasgs~Dg~I~IwDl~t~~~-i~~~~~-~~~~ 229 (818)
++++|++++.||.|++||+++++.+..+. .|...|.+++|+|++. +|++|+.||.|++||+++++. +..+.. +...
T Consensus 258 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 337 (420)
T 3vl1_A 258 YGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP 337 (420)
T ss_dssp TTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred CCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC
Confidence 99999999999999999999998887775 4788999999999998 999999999999999998753 555554 6677
Q ss_pred eeEEEEeCCCCEEEEEECC-CEEEEEecCCce---------eccccccccceeeee-ecCCC---EEEEEEcCCeEEEEE
Q 003459 230 VRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC---------HDAVDVGWSRLSDLN-VHEGK---LLGCSYNQSCVGVWV 295 (818)
Q Consensus 230 I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~---------~~~~~~~~~~v~~l~-~~~g~---lLatg~~Dg~V~IWd 295 (818)
|.++.| +++.+|++++.+ .+++|++..... ...+..+...+..+. .++++ .+++.+.+|.+.+|+
T Consensus 338 v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 338 INNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred ceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence 888855 578899988766 599999976322 112233344455555 46777 788888999999999
Q ss_pred ecC
Q 003459 296 VDI 298 (818)
Q Consensus 296 vd~ 298 (818)
++.
T Consensus 417 ~~~ 419 (420)
T 3vl1_A 417 LSN 419 (420)
T ss_dssp SCC
T ss_pred ccC
Confidence 864
No 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.5e-32 Score=342.71 Aligned_cols=296 Identities=21% Similarity=0.379 Sum_probs=260.1
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
...+.+|.+.|++++|+| ++++|++|+.||+|++||+.+++.+..+.+|...|.+++|+|++++|++|+.||.|++||+
T Consensus 608 ~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp SEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEecccccEEEEEECC-CCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEEC
Confidence 346789999999999999 6778999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 89 EEAKIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 89 ~t~~~v~~l~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
.+++.+..+.+|...|.+++|+|+ +.++++|+.||.|++||+.+++++..+.+|...|.+++|+|++++|++++.||.
T Consensus 687 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~ 766 (1249)
T 3sfz_A 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGT 766 (1249)
T ss_dssp TTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSE
T ss_pred CCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCe
Confidence 999999999999999999999994 558999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEEe-------------------------------------------------------cCCCCEEEE
Q 003459 167 VKLWDLTAGKLLHDFK-------------------------------------------------------CHEGQIQCI 191 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~-------------------------------------------------------~h~~~I~sv 191 (818)
|++||+.+++....+. +|...|.++
T Consensus 767 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~ 846 (1249)
T 3sfz_A 767 LRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYC 846 (1249)
T ss_dssp EEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEE
T ss_pred EEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEE
Confidence 9999998775544332 567789999
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceec--------
Q 003459 192 DFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHD-------- 262 (818)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~-------- 262 (818)
+|+|++.++++++.||.|++||+.++..+..+.+|...|.+++|+|+|.+|++++.+ .+++|+........
T Consensus 847 ~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~ 926 (1249)
T 3sfz_A 847 DFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEI 926 (1249)
T ss_dssp EECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccccee
Confidence 999999999999999999999999999999999999999999999999999998876 59999975321100
Q ss_pred ---------------------cc--------cccccceeeee-ecCCCEEEEEEcCCeEEEEEecCCCceeee
Q 003459 263 ---------------------AV--------DVGWSRLSDLN-VHEGKLLGCSYNQSCVGVWVVDISRIEPYT 305 (818)
Q Consensus 263 ---------------------~~--------~~~~~~v~~l~-~~~g~lLatg~~Dg~V~IWdvd~~~~~~~~ 305 (818)
.. ......+..+. .++++++++|+.||.|++|++..++.....
T Consensus 927 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~ 999 (1249)
T 3sfz_A 927 DVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG 999 (1249)
T ss_dssp EEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC
T ss_pred eEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec
Confidence 00 01112233333 478999999999999999999988765533
No 63
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=298.50 Aligned_cols=251 Identities=19% Similarity=0.333 Sum_probs=221.8
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceEEEecCCCCCeEEEEEcCC--CCEEEEEECCCeE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSLSGHTSGIDSVSFDSS--EVLVAAGAASGTI 83 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~--~~~~i~~l~~h~~~V~~l~fspd--g~~Lasgs~DG~I 83 (818)
.+..+.+|.+.|++++|+| ++.+|++|+.||.|++|++. +++.+..+.+|...|.+++|+++ +.+|++|+.||.|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp --CCEEECCCCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred ccEEecCCcccEEEEEEcC-CCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 3456889999999999999 67789999999999999997 56777889999999999999987 8999999999999
Q ss_pred EEEECCCCe--EEEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcC----
Q 003459 84 KLWDLEEAK--IVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTP---- 153 (818)
Q Consensus 84 ~IWDl~t~~--~v~~l~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~~--~i~~l~~h~~~V~~l~fsp---- 153 (818)
++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||++.+. ....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 77888889999999999999 9999999999999999998873 4556778999999999999
Q ss_pred ---------CCCEEEEEECCCeEEEEECCCCe----EEEEEecCCCCEEEEEEeCC---CCEEEEEeCCCeEEEEECCCC
Q 003459 154 ---------DGRWVVSGGEDNTVKLWDLTAGK----LLHDFKCHEGQIQCIDFHPH---EFLLATGSADRTVKFWDLETF 217 (818)
Q Consensus 154 ---------dg~~L~sgs~Dg~I~IwDl~t~~----~i~~~~~h~~~I~sv~fspd---g~~Lasgs~Dg~I~IwDl~t~ 217 (818)
++.+|++++.||.|++||++++. ....+..|...|.+++|+|+ +.+|++++.||.|++||++++
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999998764 55677789999999999999 899999999999999999986
Q ss_pred e-----EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc
Q 003459 218 E-----LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR 259 (818)
Q Consensus 218 ~-----~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~ 259 (818)
. .+.....+...|.+++|+|+|++|++++.+ .+++|+++...
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 3 233334578899999999999999988766 59999998543
No 64
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.8e-33 Score=308.92 Aligned_cols=253 Identities=24% Similarity=0.483 Sum_probs=226.2
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-------eEEEecCCCCCeEEEEEcCC-CCEEEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-------AILSLSGHTSGIDSVSFDSS-EVLVAAG 77 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~-------~i~~l~~h~~~V~~l~fspd-g~~Lasg 77 (818)
..++..+.+|...|.+++|+| ++++|++|+.|+.+++|++.+.. ....+.+|...|.++.|.|+ +..|++|
T Consensus 98 ~~~~~~~~~h~~~v~~~~~s~-~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~ 176 (380)
T 3iz6_a 98 SQKTHAIKLHCPWVMECAFAP-NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG 176 (380)
T ss_dssp TEEEEEEECCCTTCCCCEECT-TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE
T ss_pred CccceEEecCCCCEEEEEECC-CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE
Confidence 456778899999999999999 67889999999999999986432 34567899999999999996 4579999
Q ss_pred ECCCeEEEEECCCCeEEEEE-----cCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECC-CCeEEEEEecCCCCeEEEE
Q 003459 78 AASGTIKLWDLEEAKIVRTL-----TGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIR 150 (818)
Q Consensus 78 s~DG~I~IWDl~t~~~v~~l-----~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~-~~~~i~~l~~h~~~V~~l~ 150 (818)
+.|++|++||+.+++.+..+ .+|...|.+++|++ ++.+|++|+.||.|++||++ .+..+..+.+|...|.+++
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~ 256 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK 256 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEE
T ss_pred CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEE
Confidence 99999999999999998888 67899999999987 78899999999999999998 5578889999999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 151 FTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 151 fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-------~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
|+|++++|++|+.||.|++||+++++.+..+..+. ..|++++|+|+|.+|++|+.||.|++||+..++.+..+
T Consensus 257 ~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 257 FFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp ECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred EecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence 99999999999999999999999999988876543 24899999999999999999999999999999888776
Q ss_pred ----CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc
Q 003459 224 ----GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR 259 (818)
Q Consensus 224 ----~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~ 259 (818)
.+|...|.+++|+|||.+|++|+.| .++||++...+
T Consensus 337 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp CCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 6789999999999999999999876 69999987543
No 65
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.6e-31 Score=310.48 Aligned_cols=290 Identities=18% Similarity=0.295 Sum_probs=244.0
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC---CeEEEEEcCC-CCEEEEEECCCe
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS---GIDSVSFDSS-EVLVAAGAASGT 82 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~---~V~~l~fspd-g~~Lasgs~DG~ 82 (818)
..+..+.+|...|++++|+|++..++++++.||.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.||.
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 230 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK 230 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe
Confidence 356778899999999999996666899999999999999999999999999999 9999999999 999999999999
Q ss_pred EEEEECCCCeEEEEE-c---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-----------------
Q 003459 83 IKLWDLEEAKIVRTL-T---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG----------------- 141 (818)
Q Consensus 83 I~IWDl~t~~~v~~l-~---~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~----------------- 141 (818)
|++||+.+++.+..+ . .|...|.+++|+ ++.+|++++.||.|++||+++++.+..+..
T Consensus 231 i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (615)
T 1pgu_A 231 ISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 309 (615)
T ss_dssp EEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET
T ss_pred EEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCC
Confidence 999999999999999 6 899999999999 999999999999999999987765544432
Q ss_pred ----------------------------CCCCeEEEEEcCC---------------------------------------
Q 003459 142 ----------------------------HTRGVNAIRFTPD--------------------------------------- 154 (818)
Q Consensus 142 ----------------------------h~~~V~~l~fspd--------------------------------------- 154 (818)
|...|.+++| |+
T Consensus 310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~ 388 (615)
T 1pgu_A 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSS 388 (615)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEE
T ss_pred CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEE
Confidence 3333333332 11
Q ss_pred -------------------------------------------------------------------CCEEEEEEC-CCe
Q 003459 155 -------------------------------------------------------------------GRWVVSGGE-DNT 166 (818)
Q Consensus 155 -------------------------------------------------------------------g~~L~sgs~-Dg~ 166 (818)
+++|++++. ||.
T Consensus 389 ~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~ 468 (615)
T 1pgu_A 389 ISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNT 468 (615)
T ss_dssp EETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSC
T ss_pred EeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCe
Confidence 334444555 556
Q ss_pred EEEEECCCCeEE-EEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC-CCCCeeEEEEeC-------
Q 003459 167 VKLWDLTAGKLL-HDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-ETSGVRCLTFNP------- 237 (818)
Q Consensus 167 I~IwDl~t~~~i-~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~-~~~~I~sl~fsp------- 237 (818)
|++||+.+++.. ..+..|...|++++|+|++.+|++++.||.|++||+.+++.+..+.. |...|++++|+|
T Consensus 469 i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~ 548 (615)
T 1pgu_A 469 IQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANE 548 (615)
T ss_dssp EEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC-----
T ss_pred EEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccc
Confidence 666666554443 44556889999999999999999999999999999999999999887 999999999999
Q ss_pred ---CCCEEEEEECC-CEEEEEecCC-ceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCC
Q 003459 238 ---DGRTLLCGLHE-SLKVFSWEPI-RCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 238 ---dg~~Lasgs~d-~I~Vwd~~~~-~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
++++|++++.+ .|++|+++.. ++...+..+...+..+.+ ++++ |++++.||.|++|+++++
T Consensus 549 ~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 549 EEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp -CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred cccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 99999999876 6999999987 677777777777777765 7888 999999999999999763
No 66
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-32 Score=306.89 Aligned_cols=279 Identities=16% Similarity=0.250 Sum_probs=228.5
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-----------eEEEecCCC------------CCeEEEEEcCCC
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----------AILSLSGHT------------SGIDSVSFDSSE 71 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~-----------~i~~l~~h~------------~~V~~l~fspdg 71 (818)
|.+.|+|++|+| ++.+|++|+.||.|+||++.+++ ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~-~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 27 EADIISTVEFNH-SGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp GGGSEEEEEECS-SSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred ccCcEEEEEECC-CCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 578999999999 67899999999999999998776 577888998 889999999998
Q ss_pred --CEEEEEECCCeEEEEECCCCeEE---------------------------------------EE-EcCCCCCeEEEEE
Q 003459 72 --VLVAAGAASGTIKLWDLEEAKIV---------------------------------------RT-LTGHRSNCISVDF 109 (818)
Q Consensus 72 --~~Lasgs~DG~I~IWDl~t~~~v---------------------------------------~~-l~~h~~~V~sv~f 109 (818)
.+|++++.||.|++||+.+++.. .. ..+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999999765432 12 3679999999999
Q ss_pred eCCCCEEEEEECCCcEEEEECCC-CeEEEE-------EecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeE---
Q 003459 110 HPFGEFFASGSLDTNLKIWDIRK-KGCIHT-------YKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKL--- 177 (818)
Q Consensus 110 spdg~~Lasgs~Dg~I~IwDl~~-~~~i~~-------l~~h~~~V~~l~fspdg-~~L~sgs~Dg~I~IwDl~t~~~--- 177 (818)
+|++++|++| .||.|++||++. +..+.. +.+|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 264 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR 264 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc
Confidence 9999999999 799999999984 444442 45799999999999998 9999999999999999999886
Q ss_pred -EEEEecCCC------------CEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CeEEEEeCCCCCC--------------
Q 003459 178 -LHDFKCHEG------------QIQCIDFHPHEFLLATGSADRTVKFWDLET-FELIGSAGPETSG-------------- 229 (818)
Q Consensus 178 -i~~~~~h~~------------~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t-~~~i~~~~~~~~~-------------- 229 (818)
+..+..|.. .|.+++|+|++.+|++++. +.|++||+++ ++++..+..|...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~ 343 (447)
T 3dw8_B 265 HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIF 343 (447)
T ss_dssp TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGG
T ss_pred eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccc
Confidence 778887775 8999999999999999998 9999999997 8877777776431
Q ss_pred -eeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccc-------------------------------ccc-ccceeeee
Q 003459 230 -VRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-------------------------------DVG-WSRLSDLN 275 (818)
Q Consensus 230 -I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~-------------------------------~~~-~~~v~~l~ 275 (818)
+..++|+|+|++|++|+.+ .|++||+..++..... ... ...+..+.
T Consensus 344 ~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 423 (447)
T 3dw8_B 344 DKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTA 423 (447)
T ss_dssp CCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEE
T ss_pred cceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEE
Confidence 2349999999999998877 5999999887654211 001 11233444
Q ss_pred e-cCCCEEEEEEcCCeEEEEEec
Q 003459 276 V-HEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 276 ~-~~g~lLatg~~Dg~V~IWdvd 297 (818)
+ +++.+|++++.++ +++|...
T Consensus 424 ~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 424 WHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp ECSSSSEEEEECSSC-EEEEECC
T ss_pred ECCCCCEEEEEecce-eeeeccc
Confidence 4 7889999887775 8888643
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.6e-33 Score=302.69 Aligned_cols=246 Identities=20% Similarity=0.291 Sum_probs=208.2
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcC--CCCEEEEEECCCeEEEE
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDS--SEVLVAAGAASGTIKLW 86 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~--~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~I~IW 86 (818)
.+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++. .+..+.+|...|.+++|++ ++++|++|+.|++|++|
T Consensus 8 ~~~~H~~~V~~v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp ------CCEEEEEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred ecccccCeEEEeeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 4679999999999999 67789999999999999997764 4678899999999999986 48899999999999999
Q ss_pred ECCCC--eEEEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCCeE---EEEEecCCCCeEEEEEcCC-----
Q 003459 87 DLEEA--KIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKGC---IHTYKGHTRGVNAIRFTPD----- 154 (818)
Q Consensus 87 Dl~t~--~~v~~l~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~~~---i~~l~~h~~~V~~l~fspd----- 154 (818)
|++++ +....+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+.+|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99987 467788899999999999998 78999999999999999987632 3445678999999999997
Q ss_pred ------------CCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCEEEEEEeCCC----CEEEEEeCCCeEEEEECC
Q 003459 155 ------------GRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDFHPHE----FLLATGSADRTVKFWDLE 215 (818)
Q Consensus 155 ------------g~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~I~sv~fspdg----~~Lasgs~Dg~I~IwDl~ 215 (818)
+++|++|+.|+.|++||++.+ +.+..+.+|...|.+++|+|++ .+|++|+.||+|++||++
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 478999999999999999765 4677788999999999999986 899999999999999997
Q ss_pred CC---e-EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003459 216 TF---E-LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 216 t~---~-~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (818)
+. . ....+..|...|.+++|+|+|++|++++.| .++||+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 247 DASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp STTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 62 1 112234567899999999999999988766 699999763
No 68
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.5e-31 Score=296.97 Aligned_cols=281 Identities=25% Similarity=0.497 Sum_probs=253.0
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
...+..+.+|.+.|.+++|+ +.+|++|+.||.|++||+.+++.+..+.+|...|.++.|+ +.+|++|+.||.|++
T Consensus 149 ~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~ 223 (445)
T 2ovr_B 149 GKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRV 223 (445)
T ss_dssp CCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEE
T ss_pred CcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEE
Confidence 44567889999999999997 3589999999999999999999999999999999999995 568999999999999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN 165 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg 165 (818)
||+.+++.+..+.+|...|.++.| ++.+|++|+.||.|++||+++++++..+.+|...|.+++| ++.++++++.||
T Consensus 224 wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~ 299 (445)
T 2ovr_B 224 WDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDT 299 (445)
T ss_dssp EESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTS
T ss_pred EECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCC
Confidence 999999999999999999999999 6889999999999999999999999999999999999999 789999999999
Q ss_pred eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC---CCCCeeEEEEeCCCCEE
Q 003459 166 TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP---ETSGVRCLTFNPDGRTL 242 (818)
Q Consensus 166 ~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~---~~~~I~sl~fspdg~~L 242 (818)
.|++||+++++.+..+.+|...+.++.++ +.+|++|+.||.|++||+++++.+..+.. |...|.+++|+ +.+|
T Consensus 300 ~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 375 (445)
T 2ovr_B 300 SIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFV 375 (445)
T ss_dssp CEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEE
T ss_pred eEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEE
Confidence 99999999999999999999999988875 56999999999999999999999988876 78889999995 6789
Q ss_pred EEEECC-CEEEEEecCCceeccc-----cccccceeeeee-cCCCEEEEEEcCCe----EEEEEecCC
Q 003459 243 LCGLHE-SLKVFSWEPIRCHDAV-----DVGWSRLSDLNV-HEGKLLGCSYNQSC----VGVWVVDIS 299 (818)
Q Consensus 243 asgs~d-~I~Vwd~~~~~~~~~~-----~~~~~~v~~l~~-~~g~lLatg~~Dg~----V~IWdvd~~ 299 (818)
++|+.+ .+++|++.+++....+ ..+...+..+.+ +++.++++|+.||. |.|||++..
T Consensus 376 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 376 ITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 988866 5999999998877665 344455666665 67888999999997 999998764
No 69
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.4e-31 Score=294.61 Aligned_cols=276 Identities=24% Similarity=0.470 Sum_probs=242.2
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003459 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (818)
+++|+|++ + ++|++|. |++|+|||..+++....+. +|...|++|+|+|+|++|++|+.||.|++||+.+++.+..
T Consensus 108 ~~~l~wS~-~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 108 LNLVDWSS-G-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp CBCEEECT-T-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred ceeEEECC-C-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 67899996 3 4777775 8999999999998877654 6788899999999999999999999999999999999999
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (818)
+.+|...+.++.|+ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.|+|++.++++++.|+.|++||..++
T Consensus 185 ~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 185 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp ECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred EeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence 99999999998886 689999999999999998864 466788999999999999999999999999999999999876
Q ss_pred e----EEEEEecCCCCEEEEEEeCCC-CEEEEE--eCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE--
Q 003459 176 K----LLHDFKCHEGQIQCIDFHPHE-FLLATG--SADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-- 246 (818)
Q Consensus 176 ~----~i~~~~~h~~~I~sv~fspdg-~~Lasg--s~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs-- 246 (818)
+ .+..+..|...|.+++|+|++ .+++++ +.|++|++||+.+++++..+..+ ..+.++.|++++..+++++
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~ 341 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGF 341 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECT
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEec
Confidence 5 345666789999999999974 566554 47999999999999999888765 5689999999999998765
Q ss_pred -CCCEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 247 -HESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 247 -~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
++.|+|||+.+.++...+..+...+..+.+ ++|++|++|+.|++|+||++....
T Consensus 342 ~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 342 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 346999999999999888888888888876 789999999999999999986543
No 70
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.1e-31 Score=296.88 Aligned_cols=250 Identities=16% Similarity=0.287 Sum_probs=226.6
Q ss_pred eEEEEecCCCCEEEEEEeeC---CC---cEEEEEeCCCeEEEEECCCCce-----EEEecCC-----CCCeEEEEEc---
Q 003459 8 KLQEFVAHSSTVNCLKIGRK---SS---RVLVTGGEDHKVNLWAIGKPNA-----ILSLSGH-----TSGIDSVSFD--- 68 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~---~~---~lLatgs~Dg~V~lWdl~~~~~-----i~~l~~h-----~~~V~~l~fs--- 68 (818)
.+..+.+|...|++++|+|+ ++ .+|++++.||.|++|++.+++. +..+..| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 46788899999999999994 27 8999999999999999988887 8888888 5999999999
Q ss_pred -CCCCE-EEEEECCCeEEEEECCC------CeEEE-----EE-------cCCCCCeEEEEEeCCCCEEEEEECCCcEEEE
Q 003459 69 -SSEVL-VAAGAASGTIKLWDLEE------AKIVR-----TL-------TGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128 (818)
Q Consensus 69 -pdg~~-Lasgs~DG~I~IWDl~t------~~~v~-----~l-------~~h~~~V~sv~fspdg~~Lasgs~Dg~I~Iw 128 (818)
|++.+ |++++.||.|++||+.+ ++.+. .+ ..|...|.+++|+|++ +|++++.||.|++|
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~ 212 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQIS 212 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEE
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEE
Confidence 99999 99999999999999988 65555 66 4588999999999999 99999999999999
Q ss_pred ECCCCeEEEEEec---C---CCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEec-------------CCC
Q 003459 129 DIRKKGCIHTYKG---H---TRGVNAIRFTPDGRWVVSGGED---NTVKLWDLTAGKLLHDFKC-------------HEG 186 (818)
Q Consensus 129 Dl~~~~~i~~l~~---h---~~~V~~l~fspdg~~L~sgs~D---g~I~IwDl~t~~~i~~~~~-------------h~~ 186 (818)
|+++++.+..+.. | ...|.+++|+|++++|++++.| |.|++||+++++.+..+.. |..
T Consensus 213 d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (397)
T 1sq9_A 213 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 292 (397)
T ss_dssp ETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS
T ss_pred ECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCC
Confidence 9999999999998 8 9999999999999999999999 9999999999999999998 999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC------CC---------------CCCeeEEEEeCCC------
Q 003459 187 QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG------PE---------------TSGVRCLTFNPDG------ 239 (818)
Q Consensus 187 ~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~------~~---------------~~~I~sl~fspdg------ 239 (818)
.|.+++|+|++.+|++++.||.|++||+++++.+..+. .| ...|.+++|+|+|
T Consensus 293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~ 372 (397)
T 1sq9_A 293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG 372 (397)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc
Confidence 99999999999999999999999999999999999988 77 8999999999998
Q ss_pred ----CEEEEEECC-CEEEEEecCC
Q 003459 240 ----RTLLCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 240 ----~~Lasgs~d-~I~Vwd~~~~ 258 (818)
++|++++.+ .|++|+++++
T Consensus 373 ~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 373 ADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccceEEEecCCCcEEEEEcCCC
Confidence 789988766 5999998765
No 71
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-31 Score=284.39 Aligned_cols=247 Identities=20% Similarity=0.294 Sum_probs=210.4
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--CeEEEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEE
Q 003459 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE--AKIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIW 128 (818)
Q Consensus 53 ~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t--~~~v~~l~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~Iw 128 (818)
..+.+|...|.+++|++++++|++|+.|++|+|||+.. .+.+.++.+|...|.+++|+++ +.+|++|+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 45778999999999999999999999999999999974 4678899999999999999863 8899999999999999
Q ss_pred ECCCCe--EEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCe--EEEEEecCCCCEEEEEEeCC------
Q 003459 129 DIRKKG--CIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHPH------ 196 (818)
Q Consensus 129 Dl~~~~--~i~~l~~h~~~V~~l~fspd--g~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h~~~I~sv~fspd------ 196 (818)
|+.+++ .+..+.+|...|.+++|+|+ |.+|++++.||.|++||++++. ....+.+|...|.+++|+|+
T Consensus 83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 162 (297)
T 2pm7_B 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (297)
T ss_dssp EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence 998774 56778889999999999997 8999999999999999998763 24567789999999999997
Q ss_pred -------CCEEEEEeCCCeEEEEECCCCe----EEEEeCCCCCCeeEEEEeCCC---CEEEEEECC-CEEEEEecCCce-
Q 003459 197 -------EFLLATGSADRTVKFWDLETFE----LIGSAGPETSGVRCLTFNPDG---RTLLCGLHE-SLKVFSWEPIRC- 260 (818)
Q Consensus 197 -------g~~Lasgs~Dg~I~IwDl~t~~----~i~~~~~~~~~I~sl~fspdg---~~Lasgs~d-~I~Vwd~~~~~~- 260 (818)
+.+|++|+.|++|++||+++++ ....+.+|...|.+++|+|++ .+|++++.| .++||+++....
T Consensus 163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence 5799999999999999998765 667788999999999999985 889988876 699999986431
Q ss_pred --eccc--cccccceeeeee-cCCCEEEEEEcCCeEEEEEecCC
Q 003459 261 --HDAV--DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 261 --~~~~--~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
...+ ..+...+..+.+ ++|++|++++.|+.|++|+....
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 1122 222344555554 78999999999999999998754
No 72
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=9.9e-31 Score=332.91 Aligned_cols=301 Identities=24% Similarity=0.409 Sum_probs=262.7
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC--CCCEEEEEECCCe
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS--SEVLVAAGAASGT 82 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fsp--dg~~Lasgs~DG~ 82 (818)
....+..+.+|.+.|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|++ ++.++++|+.||.
T Consensus 646 ~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~ 724 (1249)
T 3sfz_A 646 TGEKLLDIKAHEDEVLCCAFSS-DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724 (1249)
T ss_dssp TCCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSC
T ss_pred CCCEEEEeccCCCCEEEEEEec-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCe
Confidence 3456778899999999999999 677899999999999999999999999999999999999999 5668999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe----------------------
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK---------------------- 140 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~---------------------- 140 (818)
|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.++.....+.
T Consensus 725 v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 804 (1249)
T 3sfz_A 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCC 804 (1249)
T ss_dssp EEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCC
T ss_pred EEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEE
Confidence 9999999999999999999999999999999999999999999999997765443321
Q ss_pred ---------------------------------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCC
Q 003459 141 ---------------------------------GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ 187 (818)
Q Consensus 141 ---------------------------------~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~ 187 (818)
+|...|.+++|+|+++++++++.||.|++||+.++..+..+.+|...
T Consensus 805 ~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~ 884 (1249)
T 3sfz_A 805 SWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSW 884 (1249)
T ss_dssp CBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSC
T ss_pred EECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccc
Confidence 57788999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECC----------------------------------------------------
Q 003459 188 IQCIDFHPHEFLLATGSADRTVKFWDLE---------------------------------------------------- 215 (818)
Q Consensus 188 I~sv~fspdg~~Lasgs~Dg~I~IwDl~---------------------------------------------------- 215 (818)
|.+++|+|++.+|++++.||.|++||+.
T Consensus 885 v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 964 (1249)
T 3sfz_A 885 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQV 964 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCE
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcE
Confidence 9999999999999999999888888743
Q ss_pred ---------------------------CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceecccccc
Q 003459 216 ---------------------------TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG 267 (818)
Q Consensus 216 ---------------------------t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~ 267 (818)
+++.+..+..|...|.+++|+|+|++|++++.+ .+++|++.++++.... .+
T Consensus 965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~-~~ 1043 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ-AH 1043 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCB-CC
T ss_pred EEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEe-cC
Confidence 233344456788899999999999999998766 5999999988776433 44
Q ss_pred ccceeeeeecCCCEEEEEEcCCeEEEEEecCCCceeeeec
Q 003459 268 WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEPYTIG 307 (818)
Q Consensus 268 ~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~ 307 (818)
...+..+.+..+..+++++.||.|++||+..++......+
T Consensus 1044 ~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 1083 (1249)
T 3sfz_A 1044 QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC 1083 (1249)
T ss_dssp SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC
T ss_pred CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc
Confidence 5567777777777889999999999999998886654433
No 73
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.3e-30 Score=316.39 Aligned_cols=294 Identities=21% Similarity=0.394 Sum_probs=258.8
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~ 84 (818)
....+..+.+|.+.|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.||.|+
T Consensus 44 ~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 122 (814)
T 3mkq_A 44 TQVEVRSIQVTETPVRAGKFIA-RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122 (814)
T ss_dssp TTEEEEEEECCSSCEEEEEEEG-GGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred CCceEEEEecCCCcEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEE
Confidence 3456778899999999999999 677899999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCC-eEEEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCeEEEEEcC--CCCEEE
Q 003459 85 LWDLEEA-KIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RGVNAIRFTP--DGRWVV 159 (818)
Q Consensus 85 IWDl~t~-~~v~~l~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~-~~V~~l~fsp--dg~~L~ 159 (818)
+||+.++ .....+.+|...|.+++|+| ++.+|++++.||.|++||+.++.....+..+. ..+.+++|+| ++.+|+
T Consensus 123 vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp EEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred EEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 9999987 77888899999999999999 88899999999999999999888777776655 8899999999 999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003459 160 SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg 239 (818)
+++.||.|++||+.+++.+..+..|...|.+++|+|++.+|++++.||.|++||+.+++.+..+..+...+.+++|+|+|
T Consensus 203 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282 (814)
T ss_dssp EECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTC
T ss_pred EEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C--EEEEEECCCEEEEEecCCceecccc-------------------------------------------ccccceeee
Q 003459 240 R--TLLCGLHESLKVFSWEPIRCHDAVD-------------------------------------------VGWSRLSDL 274 (818)
Q Consensus 240 ~--~Lasgs~d~I~Vwd~~~~~~~~~~~-------------------------------------------~~~~~v~~l 274 (818)
. +++++.++++.+|++........+. .....+..+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (814)
T 3mkq_A 283 RKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSL 362 (814)
T ss_dssp GGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEE
T ss_pred CceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCcee
Confidence 7 6888888899999876432211100 001112334
Q ss_pred e-ecCCCEEEEEEcCCeEEEEEecCCC
Q 003459 275 N-VHEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 275 ~-~~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
. .++|+++++++ |+.+.+|++....
T Consensus 363 ~~spdg~~la~~~-~~~~~i~~~~~~~ 388 (814)
T 3mkq_A 363 AHSPNGRFVTVVG-DGEYVIYTALAWR 388 (814)
T ss_dssp EECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred EECCCCCEEEEec-CCEEEEEECcccc
Confidence 3 37899999888 8999999976544
No 74
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-33 Score=321.19 Aligned_cols=287 Identities=16% Similarity=0.143 Sum_probs=227.7
Q ss_pred EEEecCCCCEEEEEEeeC-----CCcEEEEEeCCCeEEEEECCCCce-----------EEEecCCCCCeEEEEEcCCCCE
Q 003459 10 QEFVAHSSTVNCLKIGRK-----SSRVLVTGGEDHKVNLWAIGKPNA-----------ILSLSGHTSGIDSVSFDSSEVL 73 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~-----~~~lLatgs~Dg~V~lWdl~~~~~-----------i~~l~~h~~~V~~l~fspdg~~ 73 (818)
..+.+|.+.|.+++|+|+ ++.+||+|+.||+|++||+.++.. ...+.+|...|.+++|++++ +
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~ 279 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-T 279 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-E
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-e
Confidence 446778899999999995 257999999999999999976532 34678899999999999864 8
Q ss_pred EEEEECCCeEEEEECCCC-eEEEEEcCCCCCeEEE--EEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEecCCC--CeE
Q 003459 74 VAAGAASGTIKLWDLEEA-KIVRTLTGHRSNCISV--DFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKGHTR--GVN 147 (818)
Q Consensus 74 Lasgs~DG~I~IWDl~t~-~~v~~l~~h~~~V~sv--~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~--~V~ 147 (818)
|++|+.||+|++||+.++ .+...+.+|...|.++ .|++++ .+|++|+.|++|+|||+++++++..+.+|.. .|.
T Consensus 280 lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~ 359 (524)
T 2j04_B 280 VVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLV 359 (524)
T ss_dssp EEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCC
T ss_pred EEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCccc
Confidence 999999999999999876 4456688999999999 578887 8999999999999999998887777776653 588
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC--
Q 003459 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-- 225 (818)
Q Consensus 148 ~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~-- 225 (818)
+++|+|++..|++++.|+.|++||++++.++..+.+|.+.|++++|+|++.+|++|+.||+|++||+... .+.....
T Consensus 360 ~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~ 438 (524)
T 2j04_B 360 PVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSS 438 (524)
T ss_dssp CEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC----
T ss_pred ceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCc
Confidence 9999999999999999999999999999988888899999999999999999999999999999998653 2111110
Q ss_pred ---CCCCeeEEEEeCCCCEEEEEECCCEEEEEec-CCceeccccccccceeeeee-cC---CCEEEEEEcCCeEEEEEec
Q 003459 226 ---ETSGVRCLTFNPDGRTLLCGLHESLKVFSWE-PIRCHDAVDVGWSRLSDLNV-HE---GKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 226 ---~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~-~~~~~~~~~~~~~~v~~l~~-~~---g~lLatg~~Dg~V~IWdvd 297 (818)
....+.+++|+|+|..+. ..+...+|.|. .+.+...+..+...+..+.+ ++ +.++++|+.||.|+||+++
T Consensus 439 ~~~~~~~v~~v~~sp~g~~~~--~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 439 ATQKSLRLWKWDYSIKDDKYR--IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp --CCCCEEEECBCCSSSCEEE--ECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred cceeeeEEEEeccCCCCCeEE--ccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 112467999999998553 34455666665 45555566666666777766 45 4599999999999999988
Q ss_pred CCC
Q 003459 298 ISR 300 (818)
Q Consensus 298 ~~~ 300 (818)
...
T Consensus 517 ~~~ 519 (524)
T 2j04_B 517 LEH 519 (524)
T ss_dssp CC-
T ss_pred ccc
Confidence 764
No 75
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.4e-31 Score=290.96 Aligned_cols=240 Identities=20% Similarity=0.362 Sum_probs=216.8
Q ss_pred CCCCEEEEEEeeCC---CcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC
Q 003459 15 HSSTVNCLKIGRKS---SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 15 H~~~V~~lafsp~~---~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t 90 (818)
|...|++++|+|+. +.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.||.|++||+.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 77889999999953 56999999999999999999999999999999999999999 999999999999999999999
Q ss_pred CeEEEEE---cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE----------------------------
Q 003459 91 AKIVRTL---TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---------------------------- 139 (818)
Q Consensus 91 ~~~v~~l---~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l---------------------------- 139 (818)
++.+..+ .+|...|.+++|+|++.+|++++.||.|++||+++++.+..+
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 9999998 689999999999999999999999999999999876544333
Q ss_pred ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--------------EEEEEecCCCCEEEEEEeCC--CCEEEEE
Q 003459 140 KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--------------LLHDFKCHEGQIQCIDFHPH--EFLLATG 203 (818)
Q Consensus 140 ~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~--------------~i~~~~~h~~~I~sv~fspd--g~~Lasg 203 (818)
..|...|.+++|+ +++|++++.||.|++||++++. .+..+..|...|++++|+|+ +.+|++|
T Consensus 228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 3399999999999 7799999999999999998764 47888889999999999999 9999999
Q ss_pred eCCCeEEEEECCCCe----EEEEeCCC--CCCeeEEEEeCCCCEEEEEECC-CEEEEEec
Q 003459 204 SADRTVKFWDLETFE----LIGSAGPE--TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE 256 (818)
Q Consensus 204 s~Dg~I~IwDl~t~~----~i~~~~~~--~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~ 256 (818)
+.||.|++||+.+++ ....+..| ...|.+++|+|+|++|++++.+ .|++||+.
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 999999999999875 44567776 7899999999999999999877 59999974
No 76
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.5e-31 Score=298.49 Aligned_cols=287 Identities=18% Similarity=0.325 Sum_probs=240.2
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEEA 91 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~----~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~ 91 (818)
....+++++|+...++++++.||.|+||++.+. ..+..+.+|...|.+++|+| ++.+|++|+.||.|++||+.++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345578898865556667899999999999654 23456778999999999999 9999999999999999999987
Q ss_pred -------eEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEE--ecCCCCeEEEEEcCCCCEEEEE
Q 003459 92 -------KIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTY--KGHTRGVNAIRFTPDGRWVVSG 161 (818)
Q Consensus 92 -------~~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l--~~h~~~V~~l~fspdg~~L~sg 161 (818)
+.+..+.+|...|.+++|+|++ .+|++++.||.|++||+++++.+..+ ..|...|.+++|+|++++|+++
T Consensus 115 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 194 (402)
T 2aq5_A 115 GLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194 (402)
T ss_dssp CCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEE
T ss_pred CCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEE
Confidence 6678889999999999999998 69999999999999999999999999 7899999999999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEE-ecCCCC-EEEEEEeCCCCEEEEE---eCCCeEEEEECCCCeE-EEE-eCCCCCCeeEEE
Q 003459 162 GEDNTVKLWDLTAGKLLHDF-KCHEGQ-IQCIDFHPHEFLLATG---SADRTVKFWDLETFEL-IGS-AGPETSGVRCLT 234 (818)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~-~~h~~~-I~sv~fspdg~~Lasg---s~Dg~I~IwDl~t~~~-i~~-~~~~~~~I~sl~ 234 (818)
+.||.|++||+++++.+..+ ..|.+. +.++.|+|++.+|++| +.|+.|++||+++++. +.. ...+...+.+++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 99999999999999999998 677765 8999999999999999 7899999999998654 222 234667899999
Q ss_pred EeCCCCEEEE-EE-CCCEEEEEecCCce-eccccc--cccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCceeee
Q 003459 235 FNPDGRTLLC-GL-HESLKVFSWEPIRC-HDAVDV--GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYT 305 (818)
Q Consensus 235 fspdg~~Las-gs-~d~I~Vwd~~~~~~-~~~~~~--~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~~~~ 305 (818)
|+|+|.+|++ |+ ++.|++|++...+. ...+.. +...+..+.+ +++.++++ .++.+++|++..+.+++..
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~~i~ 349 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCEPIA 349 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEEEEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcEEEEE
Confidence 9999999975 43 45799999998773 222221 2345555554 66676654 5779999999998877753
No 77
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.6e-30 Score=273.53 Aligned_cols=274 Identities=23% Similarity=0.459 Sum_probs=236.4
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003459 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (818)
+++|+||++ + +|++|. |++|+|||+.+++++..+. +|...|.+++|+|++++|++|+.||+|++||+++++.+..
T Consensus 28 ~~~l~WS~~-~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~ 104 (318)
T 4ggc_A 28 LNLVDWSSG-N-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 104 (318)
T ss_dssp CBCEEECTT-S-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred ceEEEECCC-C-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE
Confidence 578999984 3 677765 8999999999999887665 6788899999999999999999999999999999999999
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG 175 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~ 175 (818)
+.+|...+.++.+. +..+++++.++.+++|+.... ..+..+.+|...+..+.|.+++++|++++.||.|++||++++
T Consensus 105 ~~~h~~~~~~~~~~--~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 105 MTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp EECCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred ecCccceEEEeecC--CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence 99999988776654 689999999999999998865 456778899999999999999999999999999999999876
Q ss_pred eE----EEEEecCCCCEEEEEEeCCCC-E--EEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE--
Q 003459 176 KL----LHDFKCHEGQIQCIDFHPHEF-L--LATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-- 246 (818)
Q Consensus 176 ~~----i~~~~~h~~~I~sv~fspdg~-~--Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs-- 246 (818)
+. ......+.+.|.++.++|++. + +++++.+++|++||........... +...+..+.|++++..+++++
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECT
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEc
Confidence 52 344556788999999999754 3 3456788999999999988776554 457799999999999988764
Q ss_pred -CCCEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecC
Q 003459 247 -HESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 247 -~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
++.|+|||+.++++...+..+...+.++.+ ++|++|++|+.||+|+||++..
T Consensus 262 ~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 346999999999999888888888888876 6899999999999999999854
No 78
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.4e-31 Score=285.56 Aligned_cols=287 Identities=15% Similarity=0.197 Sum_probs=242.4
Q ss_pred cceeEEEEecCCCCEEEEEEeeCC--CcEEEEEeCCCeEEEEECCC-CceE-EEecCCCCCeEEEEEcCCCCEEEEEECC
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKS--SRVLVTGGEDHKVNLWAIGK-PNAI-LSLSGHTSGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~--~~lLatgs~Dg~V~lWdl~~-~~~i-~~l~~h~~~V~~l~fspdg~~Lasgs~D 80 (818)
....+..+.+|.+.|+|++|+|++ +.+|++|+.||.|++||+.+ +..+ ..+.+|...|.+++|+|++++|++++.|
T Consensus 28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 107 (368)
T 3mmy_A 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD 107 (368)
T ss_dssp TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence 445677889999999999999965 78999999999999999986 5554 7788999999999999999999999999
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEE--eCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDF--HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~f--spdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L 158 (818)
|.|++||+.+++.+. +..|...|.+++| ++++.+|++++.||.|++||+++++.+..+..+. .+.++.+. +..+
T Consensus 108 g~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--~~~~ 183 (368)
T 3mmy_A 108 KTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--YPMA 183 (368)
T ss_dssp SEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--TTEE
T ss_pred CcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--CCee
Confidence 999999999998776 4559999999999 8899999999999999999999999998888665 57777776 4588
Q ss_pred EEEECCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEeCCCCE----EEEEeCCCeEEEEECCCC---eEEEEeCCCCC-
Q 003459 159 VSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFL----LATGSADRTVKFWDLETF---ELIGSAGPETS- 228 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sv~fspdg~~----Lasgs~Dg~I~IwDl~t~---~~i~~~~~~~~- 228 (818)
++++.++.+.+||++......... .+...+.++.+.++... +++++.||.|++||++.. ..+..+..|..
T Consensus 184 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~ 263 (368)
T 3mmy_A 184 VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSN 263 (368)
T ss_dssp EEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC
T ss_pred EEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecc
Confidence 999999999999998765443332 23456677777766544 999999999999999987 44556666654
Q ss_pred -----------CeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 229 -----------GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 229 -----------~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
.|.+++|+|+|++|++|+.+ .|++||+...++...+..+...+..+.+ ++|++|++++.|+..+.|+
T Consensus 264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence 79999999999999998766 5999999999988888877777888776 7899999999998655544
No 79
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-30 Score=287.27 Aligned_cols=239 Identities=21% Similarity=0.319 Sum_probs=221.3
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV 94 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v 94 (818)
|.+.|++++|+| ++.+|++|+.||.|++|| .+++.+..+.+|...|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 107 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 107 TTNQVTCLAWSH-DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp -CBCEEEEEECT-TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred CCCceEEEEEcC-CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 788999999999 678899999999999999 678889999999999999999999999999999999999999887665
Q ss_pred EE--------------------------------------------------------EcCCCCCeEEEEEeCCCCEEEE
Q 003459 95 RT--------------------------------------------------------LTGHRSNCISVDFHPFGEFFAS 118 (818)
Q Consensus 95 ~~--------------------------------------------------------l~~h~~~V~sv~fspdg~~Las 118 (818)
.. +..|...|.+++|+|++++|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 43 3356778999999999999999
Q ss_pred EECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCC
Q 003459 119 GSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF 198 (818)
Q Consensus 119 gs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~ 198 (818)
++.||.|++||+++++.+..+..|...|.+++|+|++ +|++++.||.|++||+++++.+..+..|...|.+++|+|++.
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~ 343 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQ 343 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSS
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCC
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCeEEEEECCCCe--------------------EEEEeCCCCC--CeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003459 199 LLATGSADRTVKFWDLETFE--------------------LIGSAGPETS--GVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 199 ~Lasgs~Dg~I~IwDl~t~~--------------------~i~~~~~~~~--~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
+|++++.||.|++||+.+++ .+..+..|.. .|.+++|+|++++|++++.+ .+++|++
T Consensus 344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 99999999999999999888 8888988866 99999999999999988776 5999997
Q ss_pred c
Q 003459 256 E 256 (818)
Q Consensus 256 ~ 256 (818)
+
T Consensus 424 ~ 424 (425)
T 1r5m_A 424 P 424 (425)
T ss_dssp C
T ss_pred c
Confidence 5
No 80
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-30 Score=279.01 Aligned_cols=252 Identities=15% Similarity=0.342 Sum_probs=230.8
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC-----
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS----- 80 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D----- 80 (818)
...+..+.+|.+.|.+++|+| ++++|++++.||.|++||+.+++.+..+. |...|.+++|+|++.+|++++.+
T Consensus 64 ~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~ 141 (369)
T 3zwl_B 64 GERLGTLDGHTGTIWSIDVDC-FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNP 141 (369)
T ss_dssp CCEEEEECCCSSCEEEEEECT-TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBC
T ss_pred chhhhhhhhcCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCC
Confidence 446678899999999999999 67789999999999999999999998888 88999999999999999999999
Q ss_pred CeEEEEECCCCe-----------EEEEEcCCCC--CeEEEEEeCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCCCCe
Q 003459 81 GTIKLWDLEEAK-----------IVRTLTGHRS--NCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGCIHTYKGHTRGV 146 (818)
Q Consensus 81 G~I~IWDl~t~~-----------~v~~l~~h~~--~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-~~~i~~l~~h~~~V 146 (818)
|.|++||+..+. .+..+..|.. .+.+++|+|++++|++++.||.|++||+++ ++.+..+..|...|
T Consensus 142 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v 221 (369)
T 3zwl_B 142 GSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI 221 (369)
T ss_dssp CEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCE
T ss_pred CEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCce
Confidence 999999987542 3344555666 899999999999999999999999999998 78899999999999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCC--------------eEEEE
Q 003459 147 NAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR--------------TVKFW 212 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg--------------~I~Iw 212 (818)
.+++|+|++++|++++.||.|++||+++++.+..+. +...+.+++|+|++.++++++.++ .+++|
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 300 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFY 300 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEE
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEE
Confidence 999999999999999999999999999999999888 788999999999999999999988 89999
Q ss_pred ECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCce
Q 003459 213 DLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC 260 (818)
Q Consensus 213 Dl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~ 260 (818)
|+.+++.+..+..|...|.+++|+|+|++|++++.+ .+++|+++....
T Consensus 301 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 301 HKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred ecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 999999999999999999999999999999999876 599999986543
No 81
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.8e-30 Score=309.93 Aligned_cols=246 Identities=26% Similarity=0.484 Sum_probs=219.3
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
....+.+|...|.+++|+| ++++|++|+.||.|+|||+.++..+..+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 422 ~~~~~~~h~~~v~~v~~s~-~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 422 AQRRLTGHSHFVEDVVLSS-DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp EEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ccceecCCCCcEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 4567899999999999999 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEE---cCCCCCeEEEEEeCCC--CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003459 88 LEEAKIVRTL---TGHRSNCISVDFHPFG--EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 88 l~t~~~v~~l---~~h~~~V~sv~fspdg--~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs 162 (818)
+......... .+|...|.+++|+|++ .+|++|+.|+.|++||++++++...+.+|...|.+++|+|+|++|++|+
T Consensus 501 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 501 TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp TTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 8765443332 3688899999999987 5899999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCC---------------
Q 003459 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET--------------- 227 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~--------------- 227 (818)
.||.|++||+++++.+..+. +...|.+++|+|++.+|++++ ++.|++||+++++.+..+..+.
T Consensus 581 ~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAAT 658 (694)
T ss_dssp TTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred CCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccC
Confidence 99999999999999988876 456899999999999888876 5669999999999887764321
Q ss_pred ----CCeeEEEEeCCCCEEEEEECCC-EEEEEec
Q 003459 228 ----SGVRCLTFNPDGRTLLCGLHES-LKVFSWE 256 (818)
Q Consensus 228 ----~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~ 256 (818)
..+.+++|+|||++|++|+.|+ |+||++.
T Consensus 659 ~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 659 KRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp --CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 1368899999999999998775 9999875
No 82
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.8e-31 Score=289.14 Aligned_cols=241 Identities=18% Similarity=0.291 Sum_probs=208.6
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC---CCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH---TSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h---~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
+.+|...|.+++|+|+++.+|++++.||.|++||+.+ ..+..+..| ...|.+++|+|++.+|++|+.||.|++||+
T Consensus 114 ~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 192 (383)
T 3ei3_B 114 GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL 192 (383)
T ss_dssp CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC
Confidence 3479999999999997778999999999999999985 555566544 488999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCC----CeEEEEEecCCCCeEEEEEcC-CCCEEEEEE
Q 003459 89 EEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK----KGCIHTYKGHTRGVNAIRFTP-DGRWVVSGG 162 (818)
Q Consensus 89 ~t~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~----~~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs 162 (818)
+++.+..+.+|...|.+++|+|+++ +|++|+.|+.|++||+++ +.++..+ +|...|.+++|+| ++.+|++++
T Consensus 193 -~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~ 270 (383)
T 3ei3_B 193 -DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD 270 (383)
T ss_dssp -TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred -CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence 6788899999999999999999999 999999999999999997 6677766 6999999999999 999999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCC-----------------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC
Q 003459 163 EDNTVKLWDLTAGKLLHDFKCHE-----------------GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP 225 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~-----------------~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~ 225 (818)
.|+.|++||+++++....+..|. +.+..++|+|++.+ +|+.||.|++||+.+++.+..+..
T Consensus 271 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~ 348 (383)
T 3ei3_B 271 QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD 348 (383)
T ss_dssp SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB
T ss_pred CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC
Confidence 99999999999887766665442 23444556666655 667899999999999999998876
Q ss_pred --CCCCeeEEEEeCCCCEEEEEECCCEEEEEecC
Q 003459 226 --ETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 257 (818)
Q Consensus 226 --~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~ 257 (818)
+...+.+++|+|+|++|++|+++.|+||+++.
T Consensus 349 ~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 349 PNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp TTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred CCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 45677888999999999999877899999864
No 83
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=1.1e-30 Score=289.59 Aligned_cols=279 Identities=10% Similarity=0.162 Sum_probs=223.4
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCC-------eEEEEECCCCce----------EEEecCCCCCeEEEEEcCCCCEEEEEE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDH-------KVNLWAIGKPNA----------ILSLSGHTSGIDSVSFDSSEVLVAAGA 78 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg-------~V~lWdl~~~~~----------i~~l~~h~~~V~~l~fspdg~~Lasgs 78 (818)
..+|+|++|+| ++++|++|+.|. .|++|++..... ...+.+|...|.+++++ +..+++|+
T Consensus 14 g~PV~sv~fs~-dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLN-NDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEE-TTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeC-CCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 46899999999 678999987643 599999865431 23466888899888775 45666654
Q ss_pred -----------CCCeEEEEECCCCe----EEEEEc-----CCCCCeEEEEEeCCCCEEEEEE--CCCcEEEEECCCCeEE
Q 003459 79 -----------ASGTIKLWDLEEAK----IVRTLT-----GHRSNCISVDFHPFGEFFASGS--LDTNLKIWDIRKKGCI 136 (818)
Q Consensus 79 -----------~DG~I~IWDl~t~~----~v~~l~-----~h~~~V~sv~fspdg~~Lasgs--~Dg~I~IwDl~~~~~i 136 (818)
.|+.+++|++.... .+.... .+...+.+++|+|||+++++++ .|++|+|||+.+++++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 46789999986542 122221 2345688999999999877554 6899999999999999
Q ss_pred EEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE--EecCCCCEEEEEEeCCCCEEEEEeCCC----eEE
Q 003459 137 HTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD--FKCHEGQIQCIDFHPHEFLLATGSADR----TVK 210 (818)
Q Consensus 137 ~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~--~~~h~~~I~sv~fspdg~~Lasgs~Dg----~I~ 210 (818)
..+. |...|.+++|+|||++|++++.+ .+.+|+..+++.+.. ...|...|.+++|+|++.++++++.|+ .++
T Consensus 171 ~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~ 248 (365)
T 4h5i_A 171 FEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLT 248 (365)
T ss_dssp EEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEE
T ss_pred EEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEe
Confidence 9886 77889999999999999998754 566777777766543 345778899999999999999999887 688
Q ss_pred EEECCCCeE----EEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccc-cccccceeeeee-cCCCEEE
Q 003459 211 FWDLETFEL----IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAV-DVGWSRLSDLNV-HEGKLLG 283 (818)
Q Consensus 211 IwDl~t~~~----i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~-~~~~~~v~~l~~-~~g~lLa 283 (818)
+||+..... ...+..|..+|++++|+|||++|++|+.| .|+|||..++++...+ ..+...+..+.+ ++|++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~la 328 (365)
T 4h5i_A 249 KISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVA 328 (365)
T ss_dssp EEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEE
T ss_pred ecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEE
Confidence 999877653 34567888999999999999999999877 5999999999988764 667778888876 8999999
Q ss_pred EEEcCCeEEEEEecCC
Q 003459 284 CSYNQSCVGVWVVDIS 299 (818)
Q Consensus 284 tg~~Dg~V~IWdvd~~ 299 (818)
+|+.|++|+||++...
T Consensus 329 S~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 329 SVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEETTSEEEEEECCTT
T ss_pred EEeCCCeEEEEEcCCC
Confidence 9999999999998644
No 84
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=4.6e-30 Score=286.96 Aligned_cols=244 Identities=21% Similarity=0.384 Sum_probs=218.3
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE-EAKI 93 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~-t~~~ 93 (818)
|...|++++|+| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.||.|++||+. .+..
T Consensus 133 ~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 133 ESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp TTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 899999999999 6778999999999999999999999999999999999999 56799999999999999998 5677
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC-EEEEEE--CCCeEEEE
Q 003459 94 VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR-WVVSGG--EDNTVKLW 170 (818)
Q Consensus 94 v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~-~L~sgs--~Dg~I~Iw 170 (818)
+..+.+|...|.+++|+|++.+|++|+.||.|++||+++++.+..+..|...|.+++|+|++. ++++++ .|+.|++|
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 888999999999999999999999999999999999999999999999999999999999765 555554 69999999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEE--eCCCeEEEEECCCCeEEE--EeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG--SADRTVKFWDLETFELIG--SAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasg--s~Dg~I~IwDl~t~~~i~--~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
|+.+++.+..+. +...|.+++|+|++.+|+++ +.||.|++||+.+++... .+..|...|.+++|+|+|.+|++++
T Consensus 290 d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~ 368 (401)
T 4aez_A 290 NAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAA 368 (401)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence 999999998887 67789999999999999995 489999999999966544 4678899999999999999999987
Q ss_pred CC-CEEEEEecCCceec
Q 003459 247 HE-SLKVFSWEPIRCHD 262 (818)
Q Consensus 247 ~d-~I~Vwd~~~~~~~~ 262 (818)
.+ .+++|++..++...
T Consensus 369 ~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 369 SDENLKFWRVYDGDHVK 385 (401)
T ss_dssp TTSEEEEEECCC-----
T ss_pred CCCcEEEEECCCCcccc
Confidence 76 59999998876543
No 85
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-29 Score=270.20 Aligned_cols=248 Identities=23% Similarity=0.403 Sum_probs=224.0
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC---ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGT 82 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~---~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (818)
......+..|...|.+++|+| ++.+|++|+.||.|++|++... +.+..+.+|...|.++.| ++.+|++++.||.
T Consensus 49 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~ 125 (313)
T 3odt_A 49 QWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKT 125 (313)
T ss_dssp SEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSE
T ss_pred CEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCC
Confidence 345667889999999999999 6789999999999999998543 667788899999999999 6779999999999
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEE
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVS 160 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~-h~~~V~~l~fspdg~~L~s 160 (818)
|++|| .++....+..|...+.+++|.| ++.+|++++.||.|++|| ..+....+.. |...+.+++|+|++. +++
T Consensus 126 i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~ 200 (313)
T 3odt_A 126 AKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FIS 200 (313)
T ss_dssp EEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEE
T ss_pred EEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEE
Confidence 99999 7888889999999999999998 899999999999999999 5567777777 899999999999988 999
Q ss_pred EECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003459 161 GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (818)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~ 240 (818)
++.||.|++||+++++.+..+..|...|++++|+|++ .|++++.||.|++||+++++.+..+..+...|.+++|+|+|+
T Consensus 201 ~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~ 279 (313)
T 3odt_A 201 CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD 279 (313)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC
T ss_pred ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC
Confidence 9999999999999999999999999999999999999 688999999999999999999999999999999999999999
Q ss_pred EEEEEECCCEEEEEecCCceec
Q 003459 241 TLLCGLHESLKVFSWEPIRCHD 262 (818)
Q Consensus 241 ~Lasgs~d~I~Vwd~~~~~~~~ 262 (818)
+++++.++.+++|+++..+...
T Consensus 280 ~~~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 280 IIVGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEEEETTSCEEEEESCGGGCCC
T ss_pred EEEEeCCCcEEEEeCCCCceee
Confidence 7776666689999998776543
No 86
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.5e-30 Score=281.39 Aligned_cols=251 Identities=20% Similarity=0.300 Sum_probs=216.7
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCeEEEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcE
Q 003459 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE--EAKIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNL 125 (818)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~--t~~~v~~l~~h~~~V~sv~fspd--g~~Lasgs~Dg~I 125 (818)
+.+..+.+|...|.+++|+|++++|++|+.||.|++||+. +++.+..+.+|...|.+++|+++ +.+|++|+.||.|
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v 81 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence 4556778999999999999999999999999999999998 66788889999999999999987 8999999999999
Q ss_pred EEEECCCCe--EEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC--eEEEEEecCCCCEEEEEEeC----
Q 003459 126 KIWDIRKKG--CIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAG--KLLHDFKCHEGQIQCIDFHP---- 195 (818)
Q Consensus 126 ~IwDl~~~~--~i~~l~~h~~~V~~l~fspd--g~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h~~~I~sv~fsp---- 195 (818)
++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.||.|++||++.+ .....+..|...|.+++|+|
T Consensus 82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 161 (379)
T 3jrp_A 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 161 (379)
T ss_dssp EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence 999999987 77888889999999999999 999999999999999999987 34456677999999999999
Q ss_pred ---------CCCEEEEEeCCCeEEEEECCCCe----EEEEeCCCCCCeeEEEEeCC---CCEEEEEECC-CEEEEEecCC
Q 003459 196 ---------HEFLLATGSADRTVKFWDLETFE----LIGSAGPETSGVRCLTFNPD---GRTLLCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 196 ---------dg~~Lasgs~Dg~I~IwDl~t~~----~i~~~~~~~~~I~sl~fspd---g~~Lasgs~d-~I~Vwd~~~~ 258 (818)
++.+|++++.||.|++||++++. .+..+..|...|.+++|+|+ +.+|++++.+ .+++|++...
T Consensus 162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 69999999999999999998653 55678889999999999999 8999988866 5999999876
Q ss_pred ce---eccc--cccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 259 RC---HDAV--DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 259 ~~---~~~~--~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
.. .... ..+...+..+.+ +++++|++++.||.|++|+++...
T Consensus 242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 42 1222 224445666655 789999999999999999998644
No 87
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=4.1e-30 Score=280.89 Aligned_cols=249 Identities=17% Similarity=0.239 Sum_probs=219.8
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE--ecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS--LSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~--l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.+++.... +..|...|.+++|+|++++|++++.||.|++
T Consensus 44 ~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i 122 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 122 (372)
T ss_dssp EEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred eeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEE
Confidence 6778899999999999999 678899999999999999988765444 4679999999999999999999999999999
Q ss_pred EECCCCe---EEEE-EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEEC------------------CCCeEEEEEecCC
Q 003459 86 WDLEEAK---IVRT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI------------------RKKGCIHTYKGHT 143 (818)
Q Consensus 86 WDl~t~~---~v~~-l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl------------------~~~~~i~~l~~h~ 143 (818)
||+..++ .... ...|...|.+++|+|++.+|++++.||.|++||+ ..++.+..+..|.
T Consensus 123 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (372)
T 1k8k_C 123 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC 202 (372)
T ss_dssp EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS
T ss_pred EEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC
Confidence 9998876 2333 3678999999999999999999999999999995 4678899999999
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--CeE--
Q 003459 144 RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET--FEL-- 219 (818)
Q Consensus 144 ~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t--~~~-- 219 (818)
..|.+++|+|++++|++++.||.|++||+++++.+..+..|...|.+++|+|++.+|++| .|+.|++||+.. ++.
T Consensus 203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~ 281 (372)
T 1k8k_C 203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSF 281 (372)
T ss_dssp SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEE
Confidence 999999999999999999999999999999999999999999999999999999988888 899999999987 421
Q ss_pred E------------------------------------EEe-CCCCCCeeEEEEe-CCC---CEEEEEECC-CEEEEEecC
Q 003459 220 I------------------------------------GSA-GPETSGVRCLTFN-PDG---RTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 220 i------------------------------------~~~-~~~~~~I~sl~fs-pdg---~~Lasgs~d-~I~Vwd~~~ 257 (818)
+ ..+ .+|...|++++|. ++| .+|++|+.| .|++|++.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 282 GGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp CCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 0 222 4788999999966 666 899999877 599999875
Q ss_pred C
Q 003459 258 I 258 (818)
Q Consensus 258 ~ 258 (818)
.
T Consensus 362 ~ 362 (372)
T 1k8k_C 362 L 362 (372)
T ss_dssp H
T ss_pred h
Confidence 4
No 88
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.98 E-value=1.2e-30 Score=283.04 Aligned_cols=247 Identities=19% Similarity=0.412 Sum_probs=214.8
Q ss_pred EecCCCCEEEEEEeeCC--CcEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCeEEEEE------cCCCCEEEEEECCCe
Q 003459 12 FVAHSSTVNCLKIGRKS--SRVLVTGGEDHKVNLWAIGKPN-AILSLSGHTSGIDSVSF------DSSEVLVAAGAASGT 82 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~--~~lLatgs~Dg~V~lWdl~~~~-~i~~l~~h~~~V~~l~f------spdg~~Lasgs~DG~ 82 (818)
..+|...|.+++|+|++ +.+|++|+.||.|++||+.+++ .+..+.+|...|.++.| ++++++|++++.||.
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 34799999999999964 6889999999999999999888 88899999999999955 688999999999999
Q ss_pred EEEEECCCCe-EEEEEcCCCC----CeEEEE----EeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC
Q 003459 83 IKLWDLEEAK-IVRTLTGHRS----NCISVD----FHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP 153 (818)
Q Consensus 83 I~IWDl~t~~-~v~~l~~h~~----~V~sv~----fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp 153 (818)
|++||+.+++ .+..+..|.. .+.+++ |+|++.+|++++.||.|++||+++++.... ..|...|.+++|+|
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDR 219 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESC
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCC
Confidence 9999999886 6777766554 788998 678999999999999999999999887554 56889999999999
Q ss_pred ---CCCEEEEEECCCeEEEEECCCCeEEEEE-----ecCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC-------
Q 003459 154 ---DGRWVVSGGEDNTVKLWDLTAGKLLHDF-----KCHEGQIQCIDFHPHEF-LLATGSADRTVKFWDLETF------- 217 (818)
Q Consensus 154 ---dg~~L~sgs~Dg~I~IwDl~t~~~i~~~-----~~h~~~I~sv~fspdg~-~Lasgs~Dg~I~IwDl~t~------- 217 (818)
++.+|++++.||.|++||+++++.+..+ ..|...|++++|+|++. +|++|+.||.|++||++.+
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 299 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKD 299 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CC
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccccccc
Confidence 9999999999999999999877654444 38999999999999998 8999999999999999753
Q ss_pred ------------eEEEEeCCCCCCeeEEEEeCCCCEEE-EEECC-CEEEEEecCCc
Q 003459 218 ------------ELIGSAGPETSGVRCLTFNPDGRTLL-CGLHE-SLKVFSWEPIR 259 (818)
Q Consensus 218 ------------~~i~~~~~~~~~I~sl~fspdg~~La-sgs~d-~I~Vwd~~~~~ 259 (818)
+.+..+..|...|.+++|+|+|++|+ +++.+ .++||++....
T Consensus 300 ~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 300 SEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp TTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 46777888999999999999999998 67755 69999997643
No 89
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=6.6e-30 Score=273.85 Aligned_cols=251 Identities=18% Similarity=0.311 Sum_probs=217.6
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----eEEEEEcCCCCCeEEEEEeC--CCCEEEEEECCCcEE
Q 003459 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA----KIVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLK 126 (818)
Q Consensus 53 ~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~----~~v~~l~~h~~~V~sv~fsp--dg~~Lasgs~Dg~I~ 126 (818)
..+.+|...|++++|+|++++|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++.+|++|+.||.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 346789999999999999999999999999999999876 57778889999999999999 699999999999999
Q ss_pred EEECCCC---------eEEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEe-------------
Q 003459 127 IWDIRKK---------GCIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAGKLLHDFK------------- 182 (818)
Q Consensus 127 IwDl~~~---------~~i~~l~~h~~~V~~l~fspd--g~~L~sgs~Dg~I~IwDl~t~~~i~~~~------------- 182 (818)
+||++.+ +.+..+..|...|.+++|+|+ +.+|++++.||.|++||+++++.+..+.
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 9999887 668888899999999999999 9999999999999999998876443322
Q ss_pred cCCCCEEEEEEeCC---CCEEEEEeCCCeEEEEECCCCeE--EEEeCCCCCCeeEEEEeCCC----CEEEEEECC-CEEE
Q 003459 183 CHEGQIQCIDFHPH---EFLLATGSADRTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDG----RTLLCGLHE-SLKV 252 (818)
Q Consensus 183 ~h~~~I~sv~fspd---g~~Lasgs~Dg~I~IwDl~t~~~--i~~~~~~~~~I~sl~fspdg----~~Lasgs~d-~I~V 252 (818)
.|...+.++.|+|+ +.+|++++.|+.+.+|+...++. +..+..|...|.+++|+|++ .+|++|+.+ .|++
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 46778999999997 89999999999999998888765 67788899999999999998 789988876 5999
Q ss_pred EEecCC----------------------------------------------ceeccccccccceeeeee-cCCCEEEEE
Q 003459 253 FSWEPI----------------------------------------------RCHDAVDVGWSRLSDLNV-HEGKLLGCS 285 (818)
Q Consensus 253 wd~~~~----------------------------------------------~~~~~~~~~~~~v~~l~~-~~g~lLatg 285 (818)
|++... +....+..+...+..+.+ +++++|+++
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 999864 233334445566777766 689999999
Q ss_pred EcCCeEEEEEecCCCcee
Q 003459 286 YNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 286 ~~Dg~V~IWdvd~~~~~~ 303 (818)
+.||.|++|++..++...
T Consensus 325 ~~dg~v~iw~~~~~~~~~ 342 (351)
T 3f3f_A 325 GDDGKVRLWKATYSNEFK 342 (351)
T ss_dssp ETTSCEEEEEECTTSCEE
T ss_pred cCCCcEEEEecCcCcchh
Confidence 999999999999876443
No 90
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=5.7e-29 Score=268.32 Aligned_cols=250 Identities=26% Similarity=0.439 Sum_probs=222.8
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
..+..+.+|...|.+++|+| ++.+|++|+.|+.|++|+............+...+..+.+++++.+|++|+.|+.+++|
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~-dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~ 155 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISS-DGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW 155 (340)
T ss_dssp EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred eeeEEEeCCCCCEEEEEECC-CCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEE
Confidence 45678899999999999999 67899999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeEE-EEEcCCCCCeEEEEEeCCC--CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC
Q 003459 87 DLEEAKIV-RTLTGHRSNCISVDFHPFG--EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 87 Dl~t~~~v-~~l~~h~~~V~sv~fspdg--~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~ 163 (818)
|+...... ..+.+|...+..++|++++ .++++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++|+.
T Consensus 156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC
Confidence 99776543 4456789999999998875 47899999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC---------CCCCCeeEEE
Q 003459 164 DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG---------PETSGVRCLT 234 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~---------~~~~~I~sl~ 234 (818)
||.|++||+++++.+..+.. ...|.++.|+|++.+++ ++.|+.|++||++++..+..+. .|...|++++
T Consensus 236 Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 313 (340)
T 4aow_A 236 DGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313 (340)
T ss_dssp TCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEE
T ss_pred CCeEEEEEeccCceeeeecC-CceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEE
Confidence 99999999999999998884 56899999999987665 4569999999999988776653 5678899999
Q ss_pred EeCCCCEEEEEECC-CEEEEEecCCc
Q 003459 235 FNPDGRTLLCGLHE-SLKVFSWEPIR 259 (818)
Q Consensus 235 fspdg~~Lasgs~d-~I~Vwd~~~~~ 259 (818)
|+|||++|++|+.| .|+||++.++.
T Consensus 314 ~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 314 WSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99999999999877 59999998764
No 91
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.3e-30 Score=292.85 Aligned_cols=252 Identities=27% Similarity=0.435 Sum_probs=224.3
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC----------CceEEEecCCCCCeEEEEEcCCCC-EEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----------PNAILSLSGHTSGIDSVSFDSSEV-LVA 75 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~----------~~~i~~l~~h~~~V~~l~fspdg~-~La 75 (818)
.++....+|.+.|++++|+|+++.+|++|+.||.|++|++.+ ...+..+.+|...|.+++|+|++. +|+
T Consensus 119 ~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp EEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred eEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence 445667889999999999996678999999999999999976 677888999999999999999988 999
Q ss_pred EEECCCeEEEEECCCCeE-------EEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCC---eEEEEEecCCC
Q 003459 76 AGAASGTIKLWDLEEAKI-------VRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKK---GCIHTYKGHTR 144 (818)
Q Consensus 76 sgs~DG~I~IWDl~t~~~-------v~~l~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~---~~i~~l~~h~~ 144 (818)
+|+.||.|++||+.++.. ...+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|..
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 999999999999987321 456778999999999999 6779999999999999999987 57778889999
Q ss_pred CeEEEEEcCCCC-EEEEEECCCeEEEEECCC-CeEEEEEecCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCC-----
Q 003459 145 GVNAIRFTPDGR-WVVSGGEDNTVKLWDLTA-GKLLHDFKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLET----- 216 (818)
Q Consensus 145 ~V~~l~fspdg~-~L~sgs~Dg~I~IwDl~t-~~~i~~~~~h~~~I~sv~fspdg-~~Lasgs~Dg~I~IwDl~t----- 216 (818)
.|.+++|+|++. +|++|+.||.|++||++. +..+..+..|...|.+++|+|++ .+|++++.||.|++||+..
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~ 358 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc
Confidence 999999999887 688999999999999998 56788888899999999999998 5799999999999999987
Q ss_pred ---------CeEEEEeCCCCCCeeEEEEeCCCC-EEEEEECC-CEEEEEecCC
Q 003459 217 ---------FELIGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 217 ---------~~~i~~~~~~~~~I~sl~fspdg~-~Lasgs~d-~I~Vwd~~~~ 258 (818)
.+.+..+.+|...|++++|+|++. +|++++.+ .|+||++...
T Consensus 359 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 467888889999999999999999 78877766 4999998753
No 92
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.5e-30 Score=316.06 Aligned_cols=162 Identities=15% Similarity=0.248 Sum_probs=145.3
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (818)
..|...|.+++|+| + ++|++++.|++|++||+.+++.+..+. |...|++++|+|++++|++|+.||.|++||+.+++
T Consensus 55 ~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp CSSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence 45888999999999 4 489999999999999999999988886 77899999999999999999999999999999887
Q ss_pred EE-----------EEEcCCCCCeEEEEEeCC-CCEEEEEECCCcEEEEECCCCeEEEEEecC------------------
Q 003459 93 IV-----------RTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGH------------------ 142 (818)
Q Consensus 93 ~v-----------~~l~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h------------------ 142 (818)
.. ..+.+|...|.+++|+|+ +..|++|+.||.| +||+++++++..+..|
T Consensus 132 ~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h 210 (902)
T 2oaj_A 132 LSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKR 210 (902)
T ss_dssp EEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCB
T ss_pred cccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCccccccccccc
Confidence 64 223578899999999996 4689999999999 9999999999888766
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE
Q 003459 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL 178 (818)
Q Consensus 143 ~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i 178 (818)
...|.+++|+|+|.+|++++.||.|++||+++++++
T Consensus 211 ~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 211 TPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp CCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 467999999999999999999999999999776544
No 93
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=8.4e-31 Score=284.01 Aligned_cols=246 Identities=18% Similarity=0.289 Sum_probs=203.9
Q ss_pred EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEcCCCCCeEEEEEeC--CCCEEEEEECCCcEEEEE
Q 003459 54 SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK--IVRTLTGHRSNCISVDFHP--FGEFFASGSLDTNLKIWD 129 (818)
Q Consensus 54 ~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~--~v~~l~~h~~~V~sv~fsp--dg~~Lasgs~Dg~I~IwD 129 (818)
.+.+|...|.+++|++++++|++|+.|++|++||+.+++ .+..+.+|...|.+++|++ ++.+|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 456899999999999999999999999999999998875 4678899999999999976 488999999999999999
Q ss_pred CCCC--eEEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeE---EEEEecCCCCEEEEEEeCC------
Q 003459 130 IRKK--GCIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAGKL---LHDFKCHEGQIQCIDFHPH------ 196 (818)
Q Consensus 130 l~~~--~~i~~l~~h~~~V~~l~fspd--g~~L~sgs~Dg~I~IwDl~t~~~---i~~~~~h~~~I~sv~fspd------ 196 (818)
++++ ..+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+..|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 167 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL 167 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence 9876 467778899999999999997 88999999999999999987632 2344578889999999997
Q ss_pred -----------CCEEEEEeCCCeEEEEECCCC---eEEEEeCCCCCCeeEEEEeCCC----CEEEEEECC-CEEEEEecC
Q 003459 197 -----------EFLLATGSADRTVKFWDLETF---ELIGSAGPETSGVRCLTFNPDG----RTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 197 -----------g~~Lasgs~Dg~I~IwDl~t~---~~i~~~~~~~~~I~sl~fspdg----~~Lasgs~d-~I~Vwd~~~ 257 (818)
+.+|++|+.|++|++||++.. +.+..+..|...|++++|+|++ .+|++|+.| .++||+.+.
T Consensus 168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 468999999999999999754 5677788999999999999986 789988877 599999876
Q ss_pred Cc----eeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCC
Q 003459 258 IR----CHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 258 ~~----~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
.. ....+..+...+..+.+ +++++|++++.|+.|++|+....
T Consensus 248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 21 11223333445556655 78999999999999999998643
No 94
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.3e-30 Score=289.99 Aligned_cols=280 Identities=11% Similarity=0.119 Sum_probs=232.7
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc---eEEEecC------------------------------------
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN---AILSLSG------------------------------------ 57 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~---~i~~l~~------------------------------------ 57 (818)
.+|.|++|+++ +++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRD-GSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSS-SSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred ccEEEEEecCC-CCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 57899999995 4566655 57899999998888 5555543
Q ss_pred ------------------CCCCeEEEEEcCCCCEE-EEEECCCeEEEEECC--CCeEEEEEc--CCCCCeEEEEEeCCCC
Q 003459 58 ------------------HTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLE--EAKIVRTLT--GHRSNCISVDFHPFGE 114 (818)
Q Consensus 58 ------------------h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~--t~~~v~~l~--~h~~~V~sv~fspdg~ 114 (818)
|...|.+++|+|++++| ++|+.||.|++||+. +++.+..+. .|...|.+++|+|++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 33479999999999996 889899999999999 888888876 5678999999999999
Q ss_pred EEEEEECCCcEEEEECCCCeEEE----EEecCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCCCeEEEE-EecCCC
Q 003459 115 FFASGSLDTNLKIWDIRKKGCIH----TYKGHTRGVNAIRFTPD---GRWVVSGGEDNTVKLWDLTAGKLLHD-FKCHEG 186 (818)
Q Consensus 115 ~Lasgs~Dg~I~IwDl~~~~~i~----~l~~h~~~V~~l~fspd---g~~L~sgs~Dg~I~IwDl~t~~~i~~-~~~h~~ 186 (818)
+|++|+.+|.|++|++.++.... .+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999998876543 67789999999999999 99999999999999999999988877 457999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC-------------------------CCCCeeEEEEeCCCCE
Q 003459 187 QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-------------------------ETSGVRCLTFNPDGRT 241 (818)
Q Consensus 187 ~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~-------------------------~~~~I~sl~fspdg~~ 241 (818)
.|.+++|+ ++.+|++|+.|+.|++||+.+++.+..+.. ....|.++.|+|++++
T Consensus 243 ~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 243 FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 99999999 999999999999999999999998877652 2456899999999999
Q ss_pred EEEEE-C-CCEEEEEe--cCC---ceeccccccccceeeeeecCCCEEEEEEc-------CCeEEEEEecCCC
Q 003459 242 LLCGL-H-ESLKVFSW--EPI---RCHDAVDVGWSRLSDLNVHEGKLLGCSYN-------QSCVGVWVVDISR 300 (818)
Q Consensus 242 Lasgs-~-d~I~Vwd~--~~~---~~~~~~~~~~~~v~~l~~~~g~lLatg~~-------Dg~V~IWdvd~~~ 300 (818)
|++++ . +.|+||++ ... .....+..+ ..+..+.+..+.++++... +..|.+|.++...
T Consensus 322 l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~ 393 (450)
T 2vdu_B 322 VAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNE 393 (450)
T ss_dssp EEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTT
T ss_pred EEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCC
Confidence 99887 3 36999999 544 455555555 5667777765655555433 5568999887653
No 95
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.7e-30 Score=288.38 Aligned_cols=251 Identities=18% Similarity=0.335 Sum_probs=218.9
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC-------ceEEEecCCCCCeEEEEEcCCC-CEEEEEECC
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP-------NAILSLSGHTSGIDSVSFDSSE-VLVAAGAAS 80 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~-------~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~D 80 (818)
+..+.+|.+.|++++|+|.++.+|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++ .+|++++.|
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence 34567899999999999967789999999999999999887 6788899999999999999998 699999999
Q ss_pred CeEEEEECCCCeEEEEE--cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCC-eEEEEEcCCCC
Q 003459 81 GTIKLWDLEEAKIVRTL--TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRG-VNAIRFTPDGR 156 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l--~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l-~~h~~~-V~~l~fspdg~ 156 (818)
|.|++||+.+++.+..+ .+|...|.+++|+|++.+|++++.||.|++||+++++.+..+ ..|... +.++.|+|+++
T Consensus 154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (402)
T 2aq5_A 154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK 233 (402)
T ss_dssp SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence 99999999999999999 889999999999999999999999999999999999999998 688776 89999999999
Q ss_pred EEEEE---ECCCeEEEEECCCCeE-EEEEe-cCCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCCCeE-EEEeC--CCC
Q 003459 157 WVVSG---GEDNTVKLWDLTAGKL-LHDFK-CHEGQIQCIDFHPHEFLLAT-GSADRTVKFWDLETFEL-IGSAG--PET 227 (818)
Q Consensus 157 ~L~sg---s~Dg~I~IwDl~t~~~-i~~~~-~h~~~I~sv~fspdg~~Las-gs~Dg~I~IwDl~t~~~-i~~~~--~~~ 227 (818)
+|++| +.|+.|++||+++++. +.... .|...+.+++|+|++.+|++ |+.||.|++||+.+++. +..+. .+.
T Consensus 234 ~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~ 313 (402)
T 2aq5_A 234 ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSK 313 (402)
T ss_dssp EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCS
T ss_pred EEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccC
Confidence 99999 7899999999998654 33332 46778999999999998865 55799999999998773 33322 256
Q ss_pred CCeeEEEEeCCCCEEEEEECCCEEEEEecCCce
Q 003459 228 SGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRC 260 (818)
Q Consensus 228 ~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~ 260 (818)
..|.+++|+|++.+++++ ++.+++|++.+..+
T Consensus 314 ~~v~~~~~sp~~~~~~s~-~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 314 ESQRGMGYMPKRGLEVNK-CEIARFYKLHERKC 345 (402)
T ss_dssp SCCSEEEECCGGGSCGGG-TEEEEEEEEETTEE
T ss_pred CcccceEEecccccceec-ceeEEEEEcCCCcE
Confidence 889999999999988753 55799999987554
No 96
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=8e-29 Score=278.84 Aligned_cols=250 Identities=22% Similarity=0.435 Sum_probs=221.1
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
.++..+.+|...|+||+|+| ++.+|++|+.||.|+|||+.+++.+..+.+|...+.++.|+ +.+|++|+.|+.+++|
T Consensus 138 ~~~~~~~~~~~~V~sv~fsp-dg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~ 214 (420)
T 4gga_A 138 LQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHH 214 (420)
T ss_dssp EEEEECCSTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEE
T ss_pred EEEEEecCCCCcEEEEEECC-CCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEe
Confidence 34445668889999999999 67899999999999999999999999999999999998885 6799999999999999
Q ss_pred ECCC-CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe----EEEEEecCCCCeEEEEEcCCC-CEEEE
Q 003459 87 DLEE-AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG----CIHTYKGHTRGVNAIRFTPDG-RWVVS 160 (818)
Q Consensus 87 Dl~t-~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~----~i~~l~~h~~~V~~l~fspdg-~~L~s 160 (818)
|... ...+..+.+|...+..+.|+|++.++++++.|+.|++||...++ .+.....|...|.+++|+|++ ..+++
T Consensus 215 d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~ 294 (420)
T 4gga_A 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 294 (420)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEE
T ss_pred eecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEE
Confidence 9876 45677889999999999999999999999999999999998764 356677899999999999965 45555
Q ss_pred E--ECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003459 161 G--GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS--ADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (818)
Q Consensus 161 g--s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs--~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fs 236 (818)
+ +.|+.|++||+.+++.+..+.. ...+.++.|+|++..+++++ .|+.|+|||+.+++++..+.+|...|++++|+
T Consensus 295 ~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s 373 (420)
T 4gga_A 295 GGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 373 (420)
T ss_dssp EECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EeecCCCEEEEEeCCccccceeecc-ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 4 4799999999999999998875 46789999999999888765 78999999999999999999999999999999
Q ss_pred CCCCEEEEEECC-CEEEEEecCCce
Q 003459 237 PDGRTLLCGLHE-SLKVFSWEPIRC 260 (818)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~~~~~ 260 (818)
|||++|++|+.| .|+||++.....
T Consensus 374 pdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 374 PDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp TTSSCEEEEETTTEEEEECCSCSSC
T ss_pred CCCCEEEEEecCCeEEEEECCCCCc
Confidence 999999999877 599999865543
No 97
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-29 Score=308.76 Aligned_cols=285 Identities=14% Similarity=0.162 Sum_probs=231.4
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t 90 (818)
...+|.+.|+|++|+| ++++||+|+.||.|+||+....+....+ .|...|.+++|+| +++|++++.|++|++||+.+
T Consensus 12 ~~~gh~~~V~~lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EEEECSSCEEEEEEET-TTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred cccCCCCCcEEEEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 3458999999999999 6789999999999999999877766554 4888999999999 88999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE-----------EEEecCCCCeEEEEEcCC-CCEE
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI-----------HTYKGHTRGVNAIRFTPD-GRWV 158 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i-----------~~l~~h~~~V~~l~fspd-g~~L 158 (818)
++.+..+. |...|.+++|+|++++|++|+.||.|++||++++++. ..+.+|...|.+++|+|+ +..|
T Consensus 89 ~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l 167 (902)
T 2oaj_A 89 QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTV 167 (902)
T ss_dssp CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEE
T ss_pred CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEE
Confidence 99998887 7789999999999999999999999999999988764 223568899999999995 5789
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecC------------------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 003459 159 VSGGEDNTVKLWDLTAGKLLHDFKCH------------------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h------------------~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i 220 (818)
++|+.||.| +||+++++.+..+..| ...|++++|+|+|.+|++|+.||.|++||+++++++
T Consensus 168 ~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 168 LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 999999999 9999999999888765 467999999999999999999999999999999887
Q ss_pred EE--eC---C-------------CCCCeeEEEEe----CCC-CEEEEEECC------CEEEEEec---------------
Q 003459 221 GS--AG---P-------------ETSGVRCLTFN----PDG-RTLLCGLHE------SLKVFSWE--------------- 256 (818)
Q Consensus 221 ~~--~~---~-------------~~~~I~sl~fs----pdg-~~Lasgs~d------~I~Vwd~~--------------- 256 (818)
.. +. . +...|.+++|+ |++ .+|++|+.+ .+.+|++.
T Consensus 247 ~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~ 326 (902)
T 2oaj_A 247 MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKN 326 (902)
T ss_dssp EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH
T ss_pred EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhh
Confidence 53 21 1 24479999996 443 566777554 68888853
Q ss_pred ---CCceeccccc-cccceeeeee-----------cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 257 ---PIRCHDAVDV-GWSRLSDLNV-----------HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 257 ---~~~~~~~~~~-~~~~v~~l~~-----------~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
..++...+.. ....+.++.+ .+...+++++.||.|++|++..+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 327 YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCC
T ss_pred hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCC
Confidence 1122222221 1122223321 245588899999999999986653
No 98
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=1.3e-30 Score=295.19 Aligned_cols=254 Identities=21% Similarity=0.321 Sum_probs=210.0
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC--CCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG--HTSGIDSVSFDSSEVLVAAGAASGTI 83 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~--h~~~V~~l~fspdg~~Lasgs~DG~I 83 (818)
...+..+.+|.+.|++|+|+|.++.+|++|+.||+|++||+.++........ +...+.+++|++++.+|++|+.||.|
T Consensus 154 ~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i 233 (435)
T 4e54_B 154 KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNV 233 (435)
T ss_dssp CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBE
T ss_pred ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcE
Confidence 3445567899999999999997788999999999999999976554433333 34567899999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEE---EecCCCCeEEEEEcCCCCEEE
Q 003459 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHT---YKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~---l~~h~~~V~~l~fspdg~~L~ 159 (818)
++||+. ++.+..+.+|...|.+++|+|++. +|++|+.|+.|++||+++.+.... ..+|...|.+++|+|+|.+|+
T Consensus 234 ~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~ 312 (435)
T 4e54_B 234 ILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL 312 (435)
T ss_dssp EEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred eeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeE
Confidence 999986 456677889999999999999886 788999999999999987664433 357999999999999999999
Q ss_pred EEECCCeEEEEECCCCeEEEEEecCCC------CEEEEEEeCCCCEEEEEe------------CCCeEEEEECCCCeEEE
Q 003459 160 SGGEDNTVKLWDLTAGKLLHDFKCHEG------QIQCIDFHPHEFLLATGS------------ADRTVKFWDLETFELIG 221 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h~~------~I~sv~fspdg~~Lasgs------------~Dg~I~IwDl~t~~~i~ 221 (818)
+++.||.|++||+.++.....+..|.. .+..+.|+|++.+++++. .++.|++||..+++.+.
T Consensus 313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~ 392 (435)
T 4e54_B 313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMC 392 (435)
T ss_dssp EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEE
T ss_pred EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEE
Confidence 999999999999999988877765542 234567888887777764 23579999999999988
Q ss_pred Ee-CCCCCCeeEE-EEeCCCCEEEEEECCCEEEEEecCCce
Q 003459 222 SA-GPETSGVRCL-TFNPDGRTLLCGLHESLKVFSWEPIRC 260 (818)
Q Consensus 222 ~~-~~~~~~I~sl-~fspdg~~Lasgs~d~I~Vwd~~~~~~ 260 (818)
.+ .+|...|.++ +|+|+|.+|++|+++.|+||+++.++.
T Consensus 393 ~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 393 QLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEART 433 (435)
T ss_dssp EECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC----
T ss_pred EEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCee
Confidence 76 4677888887 699999999999988899999987764
No 99
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=284.61 Aligned_cols=245 Identities=18% Similarity=0.257 Sum_probs=206.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----------EEEEEcCCC------------CCeEEEEEeCCC-
Q 003459 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-----------IVRTLTGHR------------SNCISVDFHPFG- 113 (818)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~-----------~v~~l~~h~------------~~V~sv~fspdg- 113 (818)
|.+.|.+++|+|++.+|++|+.||.|++||+.+++ ....+.+|. ..|.+++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 57899999999999999999999999999999877 578889998 889999999998
Q ss_pred -CEEEEEECCCcEEEEECCCCeEE---------------------------------------EE-EecCCCCeEEEEEc
Q 003459 114 -EFFASGSLDTNLKIWDIRKKGCI---------------------------------------HT-YKGHTRGVNAIRFT 152 (818)
Q Consensus 114 -~~Lasgs~Dg~I~IwDl~~~~~i---------------------------------------~~-l~~h~~~V~~l~fs 152 (818)
.+|++++.|+.|++||+.++... .. ..+|...|.+++|+
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 186 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISIN 186 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEEC
T ss_pred cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEc
Confidence 79999999999999998764432 12 35799999999999
Q ss_pred CCCCEEEEEECCCeEEEEECCC-CeEEEE-------EecCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCeE----
Q 003459 153 PDGRWVVSGGEDNTVKLWDLTA-GKLLHD-------FKCHEGQIQCIDFHPHE-FLLATGSADRTVKFWDLETFEL---- 219 (818)
Q Consensus 153 pdg~~L~sgs~Dg~I~IwDl~t-~~~i~~-------~~~h~~~I~sv~fspdg-~~Lasgs~Dg~I~IwDl~t~~~---- 219 (818)
|++++|++| .||.|++||++. ++.+.. +..|...|++++|+|++ .+|++|+.||.|++||+++++.
T Consensus 187 ~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 265 (447)
T 3dw8_B 187 SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRH 265 (447)
T ss_dssp TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTT
T ss_pred CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccce
Confidence 999999998 899999999994 444442 45789999999999998 9999999999999999999886
Q ss_pred EEEeCCCCC------------CeeEEEEeCCCCEEEEEECCCEEEEEecC-Cceecccccccccee--------------
Q 003459 220 IGSAGPETS------------GVRCLTFNPDGRTLLCGLHESLKVFSWEP-IRCHDAVDVGWSRLS-------------- 272 (818)
Q Consensus 220 i~~~~~~~~------------~I~sl~fspdg~~Lasgs~d~I~Vwd~~~-~~~~~~~~~~~~~v~-------------- 272 (818)
+..+..+.. .|.+++|+|+|++|++++.+.+++||+.. .++...+..+.....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~ 345 (447)
T 3dw8_B 266 SKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDK 345 (447)
T ss_dssp CEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCC
T ss_pred eeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccc
Confidence 677777765 89999999999999999887799999986 666665544432111
Q ss_pred --eeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 273 --DLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 273 --~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
....+++++|++|+.||.|++||+..++...
T Consensus 346 ~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 346 FECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp CCEEECTTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred eEEEECCCCCEEEEeccCCEEEEEEcCCCccee
Confidence 3345889999999999999999999987654
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.3e-30 Score=311.10 Aligned_cols=249 Identities=19% Similarity=0.323 Sum_probs=219.1
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceEEEecCCCCCeEEEEEcCC--CCEEEEEECCCeEEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSLSGHTSGIDSVSFDSS--EVLVAAGAASGTIKL 85 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~--~~~~i~~l~~h~~~V~~l~fspd--g~~Lasgs~DG~I~I 85 (818)
..+.+|.+.|++++|+| ++.+|++|+.||.|++||+. +++.+..+.+|...|.+++|+++ +.+|++|+.||.|++
T Consensus 3 ~~l~gH~~~V~~l~~s~-dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 3 VIANAHNELIHDAVLDY-YGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -----CCCCEEEECCCS-SSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eecccCcceeEEEEECC-CCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 46789999999999999 56689999999999999997 55778889999999999999987 999999999999999
Q ss_pred EECCCCe--EEEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCC--eEEEEEecCCCCeEEEEEcC------
Q 003459 86 WDLEEAK--IVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKK--GCIHTYKGHTRGVNAIRFTP------ 153 (818)
Q Consensus 86 WDl~t~~--~v~~l~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~--~~i~~l~~h~~~V~~l~fsp------ 153 (818)
||+.+++ .+..+.+|...|.+++|+|+ +.+|++|+.||.|++||++++ .....+.+|...|.+++|+|
T Consensus 82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred EECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence 9999987 77888899999999999999 999999999999999999877 34556778999999999999
Q ss_pred -------CCCEEEEEECCCeEEEEECCCC----eEEEEEecCCCCEEEEEEeCC---CCEEEEEeCCCeEEEEECCCCe-
Q 003459 154 -------DGRWVVSGGEDNTVKLWDLTAG----KLLHDFKCHEGQIQCIDFHPH---EFLLATGSADRTVKFWDLETFE- 218 (818)
Q Consensus 154 -------dg~~L~sgs~Dg~I~IwDl~t~----~~i~~~~~h~~~I~sv~fspd---g~~Lasgs~Dg~I~IwDl~t~~- 218 (818)
++.+|++|+.||.|++||++++ .....+.+|...|++++|+|+ +.+|++|+.||.|++||+.+++
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence 5899999999999999999877 566778889999999999999 8999999999999999999864
Q ss_pred ----EEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCc
Q 003459 219 ----LIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIR 259 (818)
Q Consensus 219 ----~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~ 259 (818)
.+.....+...|.+++|+|+|.+|++|+.+ .|++|++....
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 333445678899999999999999988766 59999988643
No 101
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=5.1e-29 Score=274.97 Aligned_cols=282 Identities=19% Similarity=0.290 Sum_probs=210.3
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC---CCEEEEEECCCeEEEEECCC
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS---EVLVAAGAASGTIKLWDLEE 90 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspd---g~~Lasgs~DG~I~IWDl~t 90 (818)
+|...|.+++|+|+++.+|++++.||.|++||+.+++....+. +...+.++.|.+. +.++++++.||.|++||+.+
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 5999999999999778899999999999999999998888877 7788999999884 45999999999999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCe-EEEEE---------------ecCCCCeEEEEEcC
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKG-CIHTY---------------KGHTRGVNAIRFTP 153 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~-~i~~l---------------~~h~~~V~~l~fsp 153 (818)
++.+..+.+|...|.+++|+|++. .|++|+.||.|++||++++. ++..+ ..|...|.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 999999999999999999999998 58999999999999998765 44444 46888999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCC
Q 003459 154 DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-----GQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETS 228 (818)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-----~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~ 228 (818)
++++|++++.||.|++||+.+++....+..+. ..+........+..+++++.|+.|++||+.+++.+..+..|..
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 335 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYK 335 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSS
T ss_pred CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCC
Confidence 99999999999999999999987655443221 1122222233455666777899999999999999999999999
Q ss_pred CeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEec
Q 003459 229 GVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd 297 (818)
.|.+++|+|+|++|++|+.+ .+++|+++..+........... ..+.......+..+..++.+++|+..
T Consensus 336 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 336 TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK-SQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec-cccccccceeecccCccCceeecCCc
Confidence 99999999999999999866 5999999988765543322211 12223345566778889999999754
No 102
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.8e-30 Score=289.56 Aligned_cols=263 Identities=16% Similarity=0.243 Sum_probs=220.0
Q ss_pred EEECCCCceEEEe-cCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC---Ce---EEEEEcCCCCCeEEEEEeCCCC
Q 003459 43 LWAIGKPNAILSL-SGHTSGIDSVSFDS-SEVLVAAGAASGTIKLWDLEE---AK---IVRTLTGHRSNCISVDFHPFGE 114 (818)
Q Consensus 43 lWdl~~~~~i~~l-~~h~~~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t---~~---~v~~l~~h~~~V~sv~fspdg~ 114 (818)
.|+ .+++.+..+ .+|...|++++|+| ++.+|++|+.||+|++||+.+ +. ....+ .|...|.+++|+|++.
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence 487 467888888 89999999999999 999999999999999999876 43 23333 4899999999999999
Q ss_pred EEEEEECCCcEEEEECC---CCeEEEEEec------------CCCCeEEEE--EcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 115 FFASGSLDTNLKIWDIR---KKGCIHTYKG------------HTRGVNAIR--FTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (818)
Q Consensus 115 ~Lasgs~Dg~I~IwDl~---~~~~i~~l~~------------h~~~V~~l~--fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (818)
+|++|+.||.|++||+. .++.+..+.. +...+.++. +++++.+|++++.||.|++||+++++.
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 99999999999999994 5544443332 455677777 567899999999999999999999999
Q ss_pred EEEEec--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC-CCCCCeeEEEEe----CCCCEEEEEECCC-
Q 003459 178 LHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-PETSGVRCLTFN----PDGRTLLCGLHES- 249 (818)
Q Consensus 178 i~~~~~--h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~-~~~~~I~sl~fs----pdg~~Lasgs~d~- 249 (818)
+..+.. |.+.|++++|+|++.+|++|+.||.|++||+++++.+..+. .+...|.+++|+ +++.+|++|+.++
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF 284 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc
Confidence 999988 88999999999999999999999999999999999998875 677889999665 5688999998775
Q ss_pred EEEEEecCCceeccccc--------------------------cccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 250 LKVFSWEPIRCHDAVDV--------------------------GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 250 I~Vwd~~~~~~~~~~~~--------------------------~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
|++||+..+++...+.. +...+..+.+.++++|++|+.|+.|++||+..++...
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccce
Confidence 99999998876554431 2233566666788999999999999999999887655
Q ss_pred eeec
Q 003459 304 YTIG 307 (818)
Q Consensus 304 ~~~~ 307 (818)
...+
T Consensus 365 ~~~~ 368 (437)
T 3gre_A 365 AVIS 368 (437)
T ss_dssp EEEC
T ss_pred EEec
Confidence 4433
No 103
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-29 Score=274.81 Aligned_cols=265 Identities=11% Similarity=0.119 Sum_probs=214.0
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---------CCeEEEEEc
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE---------EAKIVRTLT 98 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~---------t~~~v~~l~ 98 (818)
++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.+..+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 46789999999999999999999888876 467888889888 8999999999999655 555455554
Q ss_pred -CCCCCeEEEEEeC--CCCEEEEEECCCcEEEEECCCCeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Q 003459 99 -GHRSNCISVDFHP--FGEFFASGSLDTNLKIWDIRKKGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA 174 (818)
Q Consensus 99 -~h~~~V~sv~fsp--dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~-~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t 174 (818)
+|...|.+++|+| ++++|++++.||.|++||+++++++..+. .|...|.+++|+|+|.+|++|+.||.|++||+++
T Consensus 122 ~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~ 201 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS 201 (343)
T ss_dssp CCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC
T ss_pred cCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 6778999999999 99999999999999999999999877664 3556899999999999999999999999999999
Q ss_pred CeEE-EEEec-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC---CCCCee--EEEEeCCCCEEEEEEC
Q 003459 175 GKLL-HDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP---ETSGVR--CLTFNPDGRTLLCGLH 247 (818)
Q Consensus 175 ~~~i-~~~~~-h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~---~~~~I~--sl~fspdg~~Lasgs~ 247 (818)
++.+ ..+.. |.+.|++++|+|++.+|++++ |+.|++||+++++.+..+.. +...+. +++|+|+|++|++++.
T Consensus 202 ~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 202 PDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp TTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred CCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence 9887 78887 999999999999999999999 55999999999876655443 333343 6999999999999764
Q ss_pred --CCEEEEEecCCceeccccccccceeeeee-c---CCCEEEEEEcCCeEEEEEecCCCce
Q 003459 248 --ESLKVFSWEPIRCHDAVDVGWSRLSDLNV-H---EGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 248 --d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~---~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
+.++||+++........ ..+..+.+ + +...+++++.||.+.+|-.......
T Consensus 281 ~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~ 337 (343)
T 3lrv_A 281 ESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDSFN 337 (343)
T ss_dssp TTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECSSEEE
T ss_pred CCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecCCeEe
Confidence 46999999765432111 12222222 2 6788999999999999876655544
No 104
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=2.6e-28 Score=273.66 Aligned_cols=286 Identities=12% Similarity=0.155 Sum_probs=242.0
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE-----EecCCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-----SLSGHTSGIDSVSFDSSEVLVAAGAASG 81 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~-----~l~~h~~~V~~l~fspdg~~Lasgs~DG 81 (818)
..+..+..+. .+.+++|+| ++.++++++.++.|++||+.+++... .+.+|...|.+++|++++.++++++.|+
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp EEEEEEECSS-CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred eEEEEEcCCC-CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence 3444555544 466999999 88889999999999999999998887 3457899999999999999999999999
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003459 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (818)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~s 160 (818)
.|++||+.+++.+..+..|...+.+++|+|+++++++++ .|+.|++||+++++.+..+..+ ..+.+++|+|+|++|++
T Consensus 192 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~ 270 (433)
T 3bws_A 192 AVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYI 270 (433)
T ss_dssp EEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEE
T ss_pred EEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEE
Confidence 999999999999999998999999999999999886555 7999999999999988887754 45999999999999999
Q ss_pred EE--------CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCeEEEEeCCCCCCee
Q 003459 161 GG--------EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEF-LLATGSADRTVKFWDLETFELIGSAGPETSGVR 231 (818)
Q Consensus 161 gs--------~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~-~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~ 231 (818)
++ .||.|++||+.+++.+..+. +...+.+++|+|++. ++++++.|+.|++||+.+++.+..+. +...+.
T Consensus 271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~ 348 (433)
T 3bws_A 271 AQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPN 348 (433)
T ss_dssp EEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEE
T ss_pred EECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCC
Confidence 88 48899999999998877764 556889999999996 45666899999999999999887775 567799
Q ss_pred EEEEeCCCCEEEEEECC----------------CEEEEEecCCceeccccccccceeeee-ecCCCEEEEEEc-CCeEEE
Q 003459 232 CLTFNPDGRTLLCGLHE----------------SLKVFSWEPIRCHDAVDVGWSRLSDLN-VHEGKLLGCSYN-QSCVGV 293 (818)
Q Consensus 232 sl~fspdg~~Lasgs~d----------------~I~Vwd~~~~~~~~~~~~~~~~v~~l~-~~~g~lLatg~~-Dg~V~I 293 (818)
+++|+|+|++|+++..+ .+.+||..+.+....+..+.. +..+. .++|++|++++. |+.|++
T Consensus 349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v 427 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQ-PTGLDVSPDNRYLVISDFLDHQIRV 427 (433)
T ss_dssp EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSS-EEEEEECTTSCEEEEEETTTTEEEE
T ss_pred eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCC-CceEEEcCCCCEEEEEECCCCeEEE
Confidence 99999999999887653 699999988887776665433 44444 478999988875 999999
Q ss_pred EEecC
Q 003459 294 WVVDI 298 (818)
Q Consensus 294 Wdvd~ 298 (818)
|+++.
T Consensus 428 ~~~~~ 432 (433)
T 3bws_A 428 YRRDG 432 (433)
T ss_dssp EEETT
T ss_pred EEecC
Confidence 99873
No 105
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=2.9e-30 Score=284.12 Aligned_cols=242 Identities=20% Similarity=0.266 Sum_probs=204.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC
Q 003459 55 LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA--KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK 132 (818)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~--~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~ 132 (818)
+..+..+|.+++|+|++++|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~ 86 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP 86 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC----
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Confidence 3446779999999999999999999999999999988 77888899999999999999999999999999999999998
Q ss_pred Ce---EEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe---EEEEEec-CCCCEEEEEEeCCCCEEEEEeC
Q 003459 133 KG---CIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK---LLHDFKC-HEGQIQCIDFHPHEFLLATGSA 205 (818)
Q Consensus 133 ~~---~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~---~i~~~~~-h~~~I~sv~fspdg~~Lasgs~ 205 (818)
++ ....+..|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |...|.+++|+|++.+|++++.
T Consensus 87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred CCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 77 677788899999999999999999999999999999999887 3677777 9999999999999999999999
Q ss_pred CCeEEEEECC------------------CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCce----ec
Q 003459 206 DRTVKFWDLE------------------TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRC----HD 262 (818)
Q Consensus 206 Dg~I~IwDl~------------------t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~----~~ 262 (818)
|+.|++||+. .++++..+ .|...|.+++|+|+|++|++++.+ .|++|++...++ ..
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 245 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI 245 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE
Confidence 9999999985 35566677 889999999999999999998877 599999998887 66
Q ss_pred cccccccceeeeee-cCCCEEEEEEcCCeEEEEEecC
Q 003459 263 AVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 263 ~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
.+..+...+..+.+ +++++|++++.++.+ +|+.+.
T Consensus 246 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 246 TVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred eecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 66677777777765 688888888766655 776653
No 106
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=4.4e-29 Score=276.73 Aligned_cols=243 Identities=11% Similarity=0.172 Sum_probs=201.0
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEE-----------eCCCeEEEEECCCCceEEE----e-----cCCCCCeEEEEEcCC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTG-----------GEDHKVNLWAIGKPNAILS----L-----SGHTSGIDSVSFDSS 70 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatg-----------s~Dg~V~lWdl~~~~~i~~----l-----~~h~~~V~~l~fspd 70 (818)
.+.+|...|.|++++. .++++| +.|+.+++|++.+...... . ..+...+.+++|+||
T Consensus 68 ~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 68 ALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp ECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 4668889999988864 355555 3578899999865432211 1 134556899999999
Q ss_pred CCEEEEEE--CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE--EecCCCCe
Q 003459 71 EVLVAAGA--ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT--YKGHTRGV 146 (818)
Q Consensus 71 g~~Lasgs--~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~--l~~h~~~V 146 (818)
|+++++++ .|++|+|||+.+++.+..+. |...|.+++|+|+|++|++++. +.+++|+..+++.+.. ...|...|
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v 222 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSL 222 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEE
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCE
Confidence 99887554 68999999999999999887 7788999999999999999985 4577777777766543 34688889
Q ss_pred EEEEEcCCCCEEEEEECCC----eEEEEECCCCeE----EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 003459 147 NAIRFTPDGRWVVSGGEDN----TVKLWDLTAGKL----LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~Dg----~I~IwDl~t~~~----i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~ 218 (818)
.+++|+|++.++++++.|+ .+++||+..+.. ...+..|...|++++|+|+|.+||+|+.|++|+|||+++++
T Consensus 223 ~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~ 302 (365)
T 4h5i_A 223 SKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLS 302 (365)
T ss_dssp EEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCc
Confidence 9999999999999999887 688999877653 34567789999999999999999999999999999999999
Q ss_pred EEEEe-CCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCC
Q 003459 219 LIGSA-GPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPI 258 (818)
Q Consensus 219 ~i~~~-~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~ 258 (818)
++..+ .+|...|++++|+|||++|++|+.| .|+||++...
T Consensus 303 ~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 303 MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 99875 7899999999999999999999877 5999998643
No 107
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.4e-28 Score=271.42 Aligned_cols=281 Identities=13% Similarity=0.120 Sum_probs=216.8
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKL 85 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~I 85 (818)
..+..+.+|.+.|+|++|+| ++.+|++|+.+| +++|++.+++....... ..+..++|.++++++ ++++.|++|++
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~-dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~i 85 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQ-DQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHI 85 (355)
T ss_dssp ---------CCCCCEEEECT-TSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEE
T ss_pred CCccccccCCCceEEEEECC-CCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEE
Confidence 34557789999999999999 667889888775 78999987776655443 257888998888877 56777899999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-eEEEEEecCCCCeEEEEEcCCCCEEEE--EE
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-GCIHTYKGHTRGVNAIRFTPDGRWVVS--GG 162 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-~~i~~l~~h~~~V~~l~fspdg~~L~s--gs 162 (818)
||+.+++.+..+. |...|.++.|+++. ++++ .|+.|++||+.++ +.+..+.. +...+++++ .++++ |+
T Consensus 86 Wd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~ 156 (355)
T 3vu4_A 86 WDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEF 156 (355)
T ss_dssp EETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESS
T ss_pred EECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCC
Confidence 9999999999887 67799999998753 4444 4789999999988 66655554 455567777 56666 57
Q ss_pred CCCeEEEEECCCCe----------------EEEEEecCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCeEEEEeC-
Q 003459 163 EDNTVKLWDLTAGK----------------LLHDFKCHEGQIQCIDFHPHEFLLATGSADRT-VKFWDLETFELIGSAG- 224 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~----------------~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~-I~IwDl~t~~~i~~~~- 224 (818)
.||.|++||+.+++ .+..+.+|.+.|++++|+|+|.+|++|+.||+ |++||+++++++..+.
T Consensus 157 ~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~ 236 (355)
T 3vu4_A 157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRR 236 (355)
T ss_dssp CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEEC
T ss_pred cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc
Confidence 89999999999865 26778899999999999999999999999998 9999999999999987
Q ss_pred C-CCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceecc-----------cccccc------------ceeee-eecC
Q 003459 225 P-ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDA-----------VDVGWS------------RLSDL-NVHE 278 (818)
Q Consensus 225 ~-~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~-----------~~~~~~------------~v~~l-~~~~ 278 (818)
+ |...|.+++|+|+|++|++++.+ .++||++........ +...|. ....+ ..++
T Consensus 237 g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d 316 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE 316 (355)
T ss_dssp TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence 4 89999999999999999999877 599999976432110 011111 01223 3478
Q ss_pred CCEEEEEEcCCeEEEEEecCCC
Q 003459 279 GKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 279 g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
++.|+++..||.+++|++..+.
T Consensus 317 ~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 317 SSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp SEEEEEETTTTEEEEEEEEEET
T ss_pred CCEEEEEeCCCeEEEEEEEcCC
Confidence 8999999999999999987654
No 108
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.1e-30 Score=297.68 Aligned_cols=242 Identities=8% Similarity=0.038 Sum_probs=203.5
Q ss_pred CCCCEEEEEEeeCC-C-------cEEEE-------------------EeCCCeEEEEECCCCceE----EEecCCCCCeE
Q 003459 15 HSSTVNCLKIGRKS-S-------RVLVT-------------------GGEDHKVNLWAIGKPNAI----LSLSGHTSGID 63 (818)
Q Consensus 15 H~~~V~~lafsp~~-~-------~lLat-------------------gs~Dg~V~lWdl~~~~~i----~~l~~h~~~V~ 63 (818)
+.+.|.+|+|+|++ + ++||+ ++.|++|+||++.+++.. ..+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 67899999999964 1 56666 447789999999776642 34667889999
Q ss_pred EEEEcCC------CCEEEEEECCCeEEEEECCCCeE-----------EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEE
Q 003459 64 SVSFDSS------EVLVAAGAASGTIKLWDLEEAKI-----------VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLK 126 (818)
Q Consensus 64 ~l~fspd------g~~Lasgs~DG~I~IWDl~t~~~-----------v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~ 126 (818)
+++|+|+ +.+||+++.||+|++||+..+.. ...+.+|...|.+++|+++ ..|++|+.||+|+
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~ 290 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVA 290 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEE
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEE
Confidence 9999986 57999999999999999986631 2467889999999999985 4899999999999
Q ss_pred EEECCCCe-EEEEEecCCCCeEEE--EEcCCC-CEEEEEECCCeEEEEECCCCeEEEEEecCCC--CEEEEEEeCCCCEE
Q 003459 127 IWDIRKKG-CIHTYKGHTRGVNAI--RFTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG--QIQCIDFHPHEFLL 200 (818)
Q Consensus 127 IwDl~~~~-~i~~l~~h~~~V~~l--~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~--~I~sv~fspdg~~L 200 (818)
+||++++. +...+.+|...|.++ +|+|+| .+|++|+.|++|++||+++++.+..+.+|.. .|.+++|+|++..|
T Consensus 291 lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l 370 (524)
T 2j04_B 291 EFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSY 370 (524)
T ss_dssp EEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEE
T ss_pred EEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeE
Confidence 99998764 456688999999999 578888 8999999999999999998887666666543 58899999999999
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003459 201 ATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 201 asgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (818)
++++.|++|++||++++.++..+.+|...|++++|+|+|++|++|+.| .+++|+...
T Consensus 371 ~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 371 IYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred EEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 999999999999999998877888899999999999999999999877 599998754
No 109
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.4e-27 Score=254.81 Aligned_cols=247 Identities=23% Similarity=0.435 Sum_probs=215.3
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
.++..+.+|...|++++|+| ++++|++|+.||+|++|++.+++.+..+.+|...+.++.+ ++.++++++.++.+++|
T Consensus 58 ~~~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~ 134 (318)
T 4ggc_A 58 LQLLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHH 134 (318)
T ss_dssp EEEEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred EEEEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEee
Confidence 34445568899999999999 6778999999999999999999999999999998887665 56799999999999999
Q ss_pred ECCCC-eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe----EEEEEecCCCCeEEEEEcCCCCEE---
Q 003459 87 DLEEA-KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG----CIHTYKGHTRGVNAIRFTPDGRWV--- 158 (818)
Q Consensus 87 Dl~t~-~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~----~i~~l~~h~~~V~~l~fspdg~~L--- 158 (818)
+.... ..+..+.+|...+..+.|.+++.+|++++.||.|++||+++++ .......|...|.++.++|++..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 214 (318)
T 4ggc_A 135 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT 214 (318)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEE
T ss_pred ecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEE
Confidence 98865 5667788999999999999999999999999999999998764 345556788899999999976533
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe
Q 003459 159 VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS--ADRTVKFWDLETFELIGSAGPETSGVRCLTFN 236 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs--~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fs 236 (818)
++++.++.|++||........... +...+..+.|+|++..+++++ .|+.|++||+++++++..+.+|...|++++|+
T Consensus 215 ~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s 293 (318)
T 4ggc_A 215 GGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 293 (318)
T ss_dssp EECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred EecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 356678999999999888776655 677899999999998887765 79999999999999999999999999999999
Q ss_pred CCCCEEEEEECC-CEEEEEecC
Q 003459 237 PDGRTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 237 pdg~~Lasgs~d-~I~Vwd~~~ 257 (818)
|||++|++|+.| .|+||++..
T Consensus 294 pdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 294 PDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TTSSCEEEEETTTEEEEECCSC
T ss_pred CCCCEEEEEecCCeEEEEECCC
Confidence 999999999877 499999754
No 110
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.9e-28 Score=276.76 Aligned_cols=242 Identities=26% Similarity=0.536 Sum_probs=216.5
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKL 85 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~I 85 (818)
...+..+.+|.+.|.+++| ++.+|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++
T Consensus 163 ~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~v 237 (435)
T 1p22_A 163 LECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAV 237 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEE
T ss_pred CeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEE
Confidence 4456788899999999999 45689999999999999999999999999999999999996 459999999999999
Q ss_pred EECCCCeEE---EEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE
Q 003459 86 WDLEEAKIV---RTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 86 WDl~t~~~v---~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs 162 (818)
||+.++... ..+.+|...|.+++| ++++|++|+.||.|++||+++++.+..+.+|...|.++.|+ ++++++|+
T Consensus 238 wd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~ 313 (435)
T 1p22_A 238 WDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS 313 (435)
T ss_dssp EECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEE
T ss_pred EeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEe
Confidence 999887654 677899999999999 68899999999999999999999999999999999999995 78999999
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe---------EEEEeCCCCCCeeEE
Q 003459 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE---------LIGSAGPETSGVRCL 233 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~---------~i~~~~~~~~~I~sl 233 (818)
.||.|++||+++++.+..+.+|...|.+++| ++.+|++|+.||.|++||+.+++ .+..+..|...|.++
T Consensus 314 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 391 (435)
T 1p22_A 314 SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRL 391 (435)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCE
T ss_pred CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEE
Confidence 9999999999999999999999999999998 78899999999999999998766 888899999999999
Q ss_pred EEeCCCCEEEEEECC-CEEEEEecCCce
Q 003459 234 TFNPDGRTLLCGLHE-SLKVFSWEPIRC 260 (818)
Q Consensus 234 ~fspdg~~Lasgs~d-~I~Vwd~~~~~~ 260 (818)
+| ++.+|++|+.+ .|++|++.....
T Consensus 392 ~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 392 QF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp EE--CSSCEEECCSSSEEEEEC------
T ss_pred Ee--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 99 77888888765 599999976544
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.8e-28 Score=275.69 Aligned_cols=285 Identities=19% Similarity=0.306 Sum_probs=233.0
Q ss_pred CCEEEEEEeeCCC---------cEEEEEeC----CCeEEEEECC--------------------------CCce-EEEec
Q 003459 17 STVNCLKIGRKSS---------RVLVTGGE----DHKVNLWAIG--------------------------KPNA-ILSLS 56 (818)
Q Consensus 17 ~~V~~lafsp~~~---------~lLatgs~----Dg~V~lWdl~--------------------------~~~~-i~~l~ 56 (818)
-+..|+.|.|+.. .+++.|+. ...|.++++. +++. .....
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 4678889988532 46777754 3467777542 1111 23455
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCC----------CeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCc
Q 003459 57 GHTSGIDSVSFDSS-EVLVAAGAASGTIKLWDLEE----------AKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTN 124 (818)
Q Consensus 57 ~h~~~V~~l~fspd-g~~Lasgs~DG~I~IWDl~t----------~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~ 124 (818)
.|.+.|++++|+|+ +.+|++++.+|.|++||+.+ .+.+..+.+|...|.+++|+|++. +|++|+.||.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 79999999999997 68999999999999999986 577888899999999999999998 9999999999
Q ss_pred EEEEECCCCeE-------EEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC---eEEEEEecCCCCEEEEEE
Q 003459 125 LKIWDIRKKGC-------IHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAG---KLLHDFKCHEGQIQCIDF 193 (818)
Q Consensus 125 I~IwDl~~~~~-------i~~l~~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t~---~~i~~~~~h~~~I~sv~f 193 (818)
|++||+..+.. ...+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+..|...|++++|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 99999987322 456778999999999999 7889999999999999999987 577778889999999999
Q ss_pred eCCCC-EEEEEeCCCeEEEEECCC-CeEEEEeCCCCCCeeEEEEeCCCC-EEEEEECC-CEEEEEecCC-----------
Q 003459 194 HPHEF-LLATGSADRTVKFWDLET-FELIGSAGPETSGVRCLTFNPDGR-TLLCGLHE-SLKVFSWEPI----------- 258 (818)
Q Consensus 194 spdg~-~Lasgs~Dg~I~IwDl~t-~~~i~~~~~~~~~I~sl~fspdg~-~Lasgs~d-~I~Vwd~~~~----------- 258 (818)
+|++. +|++|+.||.|++||+++ ...+..+..|...|.+++|+|++. +|++++.+ .|+||++...
T Consensus 286 ~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~ 365 (430)
T 2xyi_A 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAED 365 (430)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccccc
Confidence 99886 799999999999999998 566778888999999999999985 57777655 6999999862
Q ss_pred ---ceeccccccccceeeeee-cCCC-EEEEEEcCCeEEEEEecCCCc
Q 003459 259 ---RCHDAVDVGWSRLSDLNV-HEGK-LLGCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 259 ---~~~~~~~~~~~~v~~l~~-~~g~-lLatg~~Dg~V~IWdvd~~~~ 301 (818)
........+...+..+.+ ++++ +|++++.||.|+||+++....
T Consensus 366 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 366 GPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp CCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred CCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence 333344455566777776 5677 899999999999999976543
No 112
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=6e-27 Score=258.89 Aligned_cols=270 Identities=13% Similarity=0.161 Sum_probs=227.8
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEcCCCCCeEEE
Q 003459 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLEEAKIVRTLTGHRSNCISV 107 (818)
Q Consensus 29 ~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv 107 (818)
+.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 3578899999999999999999999888775 58999999999977 566689999999999999999888655 89999
Q ss_pred EEeCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeEEEEEecCC
Q 003459 108 DFHPFGEFFASGS-LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV-VSGGEDNTVKLWDLTAGKLLHDFKCHE 185 (818)
Q Consensus 108 ~fspdg~~Lasgs-~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L-~sgs~Dg~I~IwDl~t~~~i~~~~~h~ 185 (818)
+|+|++++|++++ .++.|++||+.+++.+..+..+ ..+.+++|+|+|++| ++++.++.|++||+.+++.+..+..+
T Consensus 80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~- 157 (391)
T 1l0q_A 80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG- 157 (391)
T ss_dssp EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-
T ss_pred EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-
Confidence 9999999876555 5799999999999998888754 468999999999987 67777999999999999998888754
Q ss_pred CCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE----CCCEEEEEecCCce
Q 003459 186 GQIQCIDFHPHEFLL-ATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL----HESLKVFSWEPIRC 260 (818)
Q Consensus 186 ~~I~sv~fspdg~~L-asgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs----~d~I~Vwd~~~~~~ 260 (818)
..+.+++|+|++.+| ++++.++.|++||+++++.+..+.. ...+.+++|+|+|++|++++ ++.+++||....+.
T Consensus 158 ~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 158 RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 567999999999877 5777889999999999988877754 45789999999999998876 34699999998888
Q ss_pred eccccccccceeeeeecCCCEE-EEEEcCCeEEEEEecCCCcee
Q 003459 261 HDAVDVGWSRLSDLNVHEGKLL-GCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 261 ~~~~~~~~~~v~~l~~~~g~lL-atg~~Dg~V~IWdvd~~~~~~ 303 (818)
...+..+.........++++.| ++++.|+.|++||+..++...
T Consensus 237 ~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~ 280 (391)
T 1l0q_A 237 TARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITA 280 (391)
T ss_dssp EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEE
Confidence 7777666554333445788877 566789999999999887654
No 113
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=5.4e-29 Score=278.49 Aligned_cols=229 Identities=17% Similarity=0.207 Sum_probs=181.0
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEE-----EecCCCCCeEEEEEcC--------CCCEEEEEECCCeEEEEECCCCeEE
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAIL-----SLSGHTSGIDSVSFDS--------SEVLVAAGAASGTIKLWDLEEAKIV 94 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~-----~l~~h~~~V~~l~fsp--------dg~~Lasgs~DG~I~IWDl~t~~~v 94 (818)
++.+|++|+.|++|+|||..++.... .+.+|.+.|.+++|+| ++++|++|+.|++|+|||+.++..+
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 45689999999999999998776543 3578999999999987 7899999999999999999999888
Q ss_pred EEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCCCeEEEEE-------------------------ecCCCCeEE
Q 003459 95 RTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRKKGCIHTY-------------------------KGHTRGVNA 148 (818)
Q Consensus 95 ~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~~~~i~~l-------------------------~~h~~~V~~ 148 (818)
..+..|...+.+++|+|++. +|++|+.||.|++||+++++..... .+|...+.+
T Consensus 180 ~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~ 259 (393)
T 4gq1_A 180 LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLAN 259 (393)
T ss_dssp EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSE
T ss_pred eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccccee
Confidence 88888999999999999875 7999999999999999887643322 357778889
Q ss_pred EEEc-CCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEE------------------EeC--CCCEEEEEeCCC
Q 003459 149 IRFT-PDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCID------------------FHP--HEFLLATGSADR 207 (818)
Q Consensus 149 l~fs-pdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~------------------fsp--dg~~Lasgs~Dg 207 (818)
+.|+ ++|+.|++++.|+.+++||+..++....+..|...+..+. |+| ++.++++|+.||
T Consensus 260 v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg 339 (393)
T 4gq1_A 260 VRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG 339 (393)
T ss_dssp EEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT
T ss_pred eeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC
Confidence 9987 7999999999999999999998877666655554444333 333 345778888999
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 208 ~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
.|++||+.+++.+.....|..+|++++|+|||++|++++++++.+|.+.
T Consensus 340 ~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 340 LIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp EEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred EEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 9999999999888888888899999999999999999999999888764
No 114
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.4e-28 Score=274.57 Aligned_cols=245 Identities=16% Similarity=0.165 Sum_probs=210.0
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceEEEec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~--~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
...+|.+.|++++|+|++..++++|+.||.|++||+. +++.+..+. .|...|.+++|+|++.+|++|+.+|.|++|
T Consensus 97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 3457888999999999554445999999999999998 888888876 577899999999999999999999999999
Q ss_pred ECCCCeEEE----EEcCCCCCeEEEEEeCC---CCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEE
Q 003459 87 DLEEAKIVR----TLTGHRSNCISVDFHPF---GEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWV 158 (818)
Q Consensus 87 Dl~t~~~v~----~l~~h~~~V~sv~fspd---g~~Lasgs~Dg~I~IwDl~~~~~i~~-l~~h~~~V~~l~fspdg~~L 158 (818)
++.+++... .+.+|...|.+++|+|+ +.+|++|+.|+.|++||+++++++.. +.+|...|.+++|+ ++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l 255 (450)
T 2vdu_B 177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL 255 (450)
T ss_dssp ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence 998876543 67789999999999999 89999999999999999999988887 55899999999999 99999
Q ss_pred EEEECCCeEEEEECCCCeEEEEEec-------------------------CCCCEEEEEEeCCCCEEEEEe-CCCeEEEE
Q 003459 159 VSGGEDNTVKLWDLTAGKLLHDFKC-------------------------HEGQIQCIDFHPHEFLLATGS-ADRTVKFW 212 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~-------------------------h~~~I~sv~fspdg~~Lasgs-~Dg~I~Iw 212 (818)
++++.|+.|++||+++++.+..+.. ....|.+++|+|++.+|++++ .|+.|++|
T Consensus 256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw 335 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL 335 (450)
T ss_dssp EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 9999999999999999998888763 235689999999999999999 89999999
Q ss_pred EC--CCC---eEEEEeCCCCCCeeEEEEeCCCCEEEEEE-------CCCEEEEEecC
Q 003459 213 DL--ETF---ELIGSAGPETSGVRCLTFNPDGRTLLCGL-------HESLKVFSWEP 257 (818)
Q Consensus 213 Dl--~t~---~~i~~~~~~~~~I~sl~fspdg~~Lasgs-------~d~I~Vwd~~~ 257 (818)
|+ ..+ +.+..+..+ ..|.+++|+|++.+++++. ++.|.+|.++.
T Consensus 336 ~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 336 EMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred EeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 99 555 677777777 8899999999654444443 22478888764
No 115
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=4.3e-28 Score=262.00 Aligned_cols=234 Identities=14% Similarity=0.199 Sum_probs=209.8
Q ss_pred eEEEEecCCCCEEEEEEeeCCCc-EEEEEeCCCeEEEEEC-CCCceEEEecC--CCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSR-VLVTGGEDHKVNLWAI-GKPNAILSLSG--HTSGIDSVSFDSSEVLVAAGAASGTI 83 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~-lLatgs~Dg~V~lWdl-~~~~~i~~l~~--h~~~V~~l~fspdg~~Lasgs~DG~I 83 (818)
.+..+.+|...|.+++|+| ++. +|++|+.||.|++||+ .+++. ..+.+ |...|.+++|++ +.+|++++.||.|
T Consensus 48 ~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i 124 (342)
T 1yfq_A 48 DLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLI 124 (342)
T ss_dssp EEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEE
T ss_pred cceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeE
Confidence 3566779999999999999 577 8999999999999999 76654 77888 999999999999 9999999999999
Q ss_pred EEEECCC---------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-Ce--EEEEEecCCCCeEEEEE
Q 003459 84 KLWDLEE---------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KG--CIHTYKGHTRGVNAIRF 151 (818)
Q Consensus 84 ~IWDl~t---------~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-~~--~i~~l~~h~~~V~~l~f 151 (818)
++||+.+ ++.+..+. |...|.+++|++++ +++++.|+.|++||+++ +. .......|...+.+++|
T Consensus 125 ~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~ 201 (342)
T 1yfq_A 125 EVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVAL 201 (342)
T ss_dssp EEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEE
T ss_pred EEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEE
Confidence 9999987 66666666 88999999999877 99999999999999988 44 34445568889999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCC------eEEEEEecCCC---------CEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 003459 152 TP-DGRWVVSGGEDNTVKLWDLTAG------KLLHDFKCHEG---------QIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (818)
Q Consensus 152 sp-dg~~L~sgs~Dg~I~IwDl~t~------~~i~~~~~h~~---------~I~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (818)
+| ++++|++++.||.|++||++.. +....+..|.. .|.+++|+|++.+|++++.||.|++||+.
T Consensus 202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCc
Confidence 99 9999999999999999999887 77888888765 99999999999999999999999999999
Q ss_pred CCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECCC
Q 003459 216 TFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHES 249 (818)
Q Consensus 216 t~~~i~~~~~~-~~~I~sl~fspdg~~Lasgs~d~ 249 (818)
+++.+..+..| ...|.+++ |+|++|++++.++
T Consensus 282 ~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 282 TRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp TTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred cHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence 99999999998 99999999 9999999988775
No 116
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.3e-29 Score=285.83 Aligned_cols=261 Identities=11% Similarity=0.078 Sum_probs=214.7
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (818)
++-...|.+++|+| +|+++|+++.|++|+ |...++.+ .+|...|.+++|+|+| .++.+.+|+.+..
T Consensus 12 ~~~~~~v~sv~~Sp-DG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~- 77 (588)
T 2j04_A 12 KEFEDWKNNLTWAR-DGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFELAQQN- 77 (588)
T ss_dssp CCCSSSSCCEEECT-TSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSCCCSS-
T ss_pred hHhhccEEEEEECC-CCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEeCCCc-
Confidence 45568899999999 778999999999999 76555544 7999999999999999 4565555554322
Q ss_pred EEEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-----CeEEEEEcCCCCEEEEEECCCe
Q 003459 93 IVRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR-----GVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 93 ~v~~l~-~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~-----~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
..+. .|...|.+++|+|+|.+||+++.||.|++||... ++..+. |.. .|.+++|+|||++|++|+.||+
T Consensus 78 --~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGt 152 (588)
T 2j04_A 78 --GLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGE 152 (588)
T ss_dssp --CSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSE
T ss_pred --eEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCE
Confidence 2333 4678899999999999999999999999999544 677777 665 4999999999999999999999
Q ss_pred EEEEECCCCe-------EEEEE----ecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE---EEEe-CCCCCCee
Q 003459 167 VKLWDLTAGK-------LLHDF----KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL---IGSA-GPETSGVR 231 (818)
Q Consensus 167 I~IwDl~t~~-------~i~~~----~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~---i~~~-~~~~~~I~ 231 (818)
|++||+.+++ .+.++ .+|...|.+++|+|+| +++++.|++|++||+..++. ...+ .+|...|.
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEE
Confidence 9999999885 36776 4577899999999999 88889999999999988773 3445 47778999
Q ss_pred EEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccceeeeee---cCCCEEEEEEcCCeEEEEEec
Q 003459 232 CLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNV---HEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 232 sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~---~~g~lLatg~~Dg~V~IWdvd 297 (818)
+++|+ |.+|++++++.|++|+....+.......+...+.++.+ ++++.|++++.||+ ++|..+
T Consensus 231 svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 231 DLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999 68999988888999999987763333245666666665 56788999999999 999998
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=3.9e-26 Score=252.34 Aligned_cols=257 Identities=16% Similarity=0.185 Sum_probs=215.8
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIK 84 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~ 84 (818)
...+..+..|. .+.+++|+|++..++++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|++++ .++.|+
T Consensus 22 ~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 22 NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLS 99 (391)
T ss_dssp TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEE
Confidence 34455666665 589999999665566888899999999999999998888665 899999999999886555 569999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEE-EEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEEE
Q 003459 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF-ASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV-VSGG 162 (818)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~L-asgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L-~sgs 162 (818)
+||+.+++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+.+++.+..+..+. .+.+++|+|++++| ++++
T Consensus 100 v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~~~ 177 (391)
T 1l0q_A 100 VIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVANF 177 (391)
T ss_dssp EEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEEET
T ss_pred EEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEEeC
Confidence 9999999998888754 568999999999977 677779999999999999998888654 57999999999988 5667
Q ss_pred CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC
Q 003459 163 EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS---ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG 239 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs---~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg 239 (818)
.++.|++||+++++.+..+. +...+.+++|+|++.+|++++ .++.|++||+.+++.+..+..+. .+.+++|+|+|
T Consensus 178 ~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg 255 (391)
T 1l0q_A 178 DSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTPDG 255 (391)
T ss_dssp TTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECTTS
T ss_pred CCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEccCC
Confidence 88999999999998888776 566889999999999998888 68999999999999888887654 57999999999
Q ss_pred CEEEEE-EC-CCEEEEEecCCceeccccccc
Q 003459 240 RTLLCG-LH-ESLKVFSWEPIRCHDAVDVGW 268 (818)
Q Consensus 240 ~~Lasg-s~-d~I~Vwd~~~~~~~~~~~~~~ 268 (818)
++|+++ .. +.+++||..+++....+..+.
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~ 286 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNTITATMAVGK 286 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence 988544 43 469999999888766654443
No 118
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.5e-28 Score=292.16 Aligned_cols=248 Identities=21% Similarity=0.284 Sum_probs=213.1
Q ss_pred EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCeEEEEEcCCCCCeEEEEEeCC--CCEEEEEECCCcEEEE
Q 003459 53 LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE--EAKIVRTLTGHRSNCISVDFHPF--GEFFASGSLDTNLKIW 128 (818)
Q Consensus 53 ~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~--t~~~v~~l~~h~~~V~sv~fspd--g~~Lasgs~Dg~I~Iw 128 (818)
..+.+|.+.|++++|+|++++|++|+.||.|++||+. +++.+..+.+|...|.+++|+++ +.+|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999999999999999999999999998 56778889999999999999988 8999999999999999
Q ss_pred ECCCCe--EEEEEecCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC--eEEEEEecCCCCEEEEEEeC-------
Q 003459 129 DIRKKG--CIHTYKGHTRGVNAIRFTPD--GRWVVSGGEDNTVKLWDLTAG--KLLHDFKCHEGQIQCIDFHP------- 195 (818)
Q Consensus 129 Dl~~~~--~i~~l~~h~~~V~~l~fspd--g~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h~~~I~sv~fsp------- 195 (818)
|+.+++ .+..+.+|...|.+++|+|+ ++++++|+.||.|++||++++ .....+..|...|.+++|+|
T Consensus 83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~ 162 (753)
T 3jro_A 83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG 162 (753)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence 999887 77788899999999999999 999999999999999999887 34455677999999999999
Q ss_pred ------CCCEEEEEeCCCeEEEEECCCC----eEEEEeCCCCCCeeEEEEeCC---CCEEEEEECC-CEEEEEecCCce-
Q 003459 196 ------HEFLLATGSADRTVKFWDLETF----ELIGSAGPETSGVRCLTFNPD---GRTLLCGLHE-SLKVFSWEPIRC- 260 (818)
Q Consensus 196 ------dg~~Lasgs~Dg~I~IwDl~t~----~~i~~~~~~~~~I~sl~fspd---g~~Lasgs~d-~I~Vwd~~~~~~- 260 (818)
++.+|++|+.||.|++||++++ ..+..+..|...|.+++|+|+ |.+|++|+.+ .+++|++.....
T Consensus 163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence 5899999999999999999876 667778899999999999999 8999998866 599999987642
Q ss_pred ----eccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 261 ----HDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 261 ----~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
......+...+..+.+ ++|++|++++.||.|++|+++...
T Consensus 243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 1112223444555554 789999999999999999998643
No 119
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=3.4e-26 Score=248.23 Aligned_cols=235 Identities=17% Similarity=0.280 Sum_probs=203.6
Q ss_pred EEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEE--cCCCCEEEEEECCCeEEEEE
Q 003459 10 QEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSF--DSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~f--spdg~~Lasgs~DG~I~IWD 87 (818)
..+.+|...|++++|+| ++.+|++|+.||.|++||+.+++.+. +.+|...|.+++| ++++.+|++++.||.|++||
T Consensus 80 ~~~~~h~~~v~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd 157 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157 (368)
T ss_dssp EEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred EEeccccCCEEEEEECc-CCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEE
Confidence 67889999999999999 67789999999999999999888766 5669999999999 89999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCE----EEEE
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRW----VVSG 161 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~--~h~~~V~~l~fspdg~~----L~sg 161 (818)
+.+++.+..+..+. .+.++.+. ...+++++.++.+++||++......... .+...+.++.+.+++.. ++++
T Consensus 158 ~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (368)
T 3mmy_A 158 TRSSNPMMVLQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALG 234 (368)
T ss_dssp SSCSSCSEEEECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEE
T ss_pred CCCCcEEEEEecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEe
Confidence 99999988888664 56666666 4688999999999999998765443332 24455677777665544 9999
Q ss_pred ECCCeEEEEECCCC---eEEEEEecCCC------------CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC
Q 003459 162 GEDNTVKLWDLTAG---KLLHDFKCHEG------------QIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (818)
Q Consensus 162 s~Dg~I~IwDl~t~---~~i~~~~~h~~------------~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~ 226 (818)
+.||.|++||++.. ..+..+..|.. .|++++|+|++.+|++|+.||.|++||+++++++..+..|
T Consensus 235 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (368)
T 3mmy_A 235 SIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314 (368)
T ss_dssp ETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred cCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence 99999999999987 55677777765 7999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEeCCCCEEEEEECCC
Q 003459 227 TSGVRCLTFNPDGRTLLCGLHES 249 (818)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~d~ 249 (818)
...|.+++|+|+|++|++++.++
T Consensus 315 ~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 315 DQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp SSCEEEEEECTTSSCEEEEECCC
T ss_pred CCCceEEEECCCCCeEEEEeccc
Confidence 99999999999999999987753
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.8e-28 Score=276.74 Aligned_cols=256 Identities=13% Similarity=0.145 Sum_probs=207.7
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
.+.+|...|.+++|+|++ .++.+.+|+. +....+. .|...|.+++|+|+|.+||+++.||.|++||.+
T Consensus 47 ~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~---~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~ 115 (588)
T 2j04_A 47 DINCNSKNLFHVKEFPLE--------FENKLDFELA---QQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN 115 (588)
T ss_dssp CCSSBGGGTEEEEEECCC--------CCCTTTTSCC---CSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT
T ss_pred eecCCCccEEEEEECCCC--------CcceEEEEeC---CCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence 347899999999999954 4555555553 3222233 568899999999999999999999999999954
Q ss_pred CCeEEEEEcCCCC-----CeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-------EEEEE----ecCCCCeEEEEEcC
Q 003459 90 EAKIVRTLTGHRS-----NCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-------CIHTY----KGHTRGVNAIRFTP 153 (818)
Q Consensus 90 t~~~v~~l~~h~~-----~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-------~i~~l----~~h~~~V~~l~fsp 153 (818)
. .+..+. |.. .+.+++|+|+|++|++|+.||+|++||+.++. .+.++ .+|...|.+++|+|
T Consensus 116 ~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP 192 (588)
T 2j04_A 116 K--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE 192 (588)
T ss_dssp E--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred c--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence 4 666667 665 49999999999999999999999999999875 36776 56778999999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCeE---EEEEe-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCC
Q 003459 154 DGRWVVSGGEDNTVKLWDLTAGKL---LHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG 229 (818)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~~~---i~~~~-~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~ 229 (818)
|| +++++.|+.|++||+..++. ..++. +|...|.+++|+ |..||+++ +++|++||+.+++......+|...
T Consensus 193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 99 88899999999999988773 35564 688899999999 68999887 699999999998885555479999
Q ss_pred eeEEEE--eCCCCEEEEEECCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCce
Q 003459 230 VRCLTF--NPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 230 I~sl~f--spdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
+.++.| +||+..|+++..++.++|..+. +. ..+++.++++. |+++++|+..+....
T Consensus 268 V~~va~~~s~d~~~La~a~edG~klw~~d~-------------~~--~spd~~l~a~~--d~~v~lW~~~g~~l~ 325 (588)
T 2j04_A 268 FHIIPLNHEKESTILLMSNKTSYKVLLEDE-------------LH--VTADNIIAPYL--EKKFKKWSTIWNEFN 325 (588)
T ss_dssp CCEEEETTCSSCEEEEECSSCEEEEEESSS-------------EE--EECCCSSHHHH--HHHHHHTTTTTTSSS
T ss_pred EEEEEeeeCCCCCEEEEEcCCCCEEEeecc-------------EE--ECCCceEEEEc--CCEEEEEECCCCcee
Confidence 999999 9999999999866559999871 11 34666666664 888888887666543
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-26 Score=252.66 Aligned_cols=229 Identities=12% Similarity=0.113 Sum_probs=190.9
Q ss_pred EcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC---------CCeEEE
Q 003459 67 FDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---------KKGCIH 137 (818)
Q Consensus 67 fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~---------~~~~i~ 137 (818)
+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|+|+ +++++.|+.|++|+.. +++.+.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~ 118 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLR 118 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeE
Confidence 34578899999999999999999999888776 456778889987 9999999999999665 555555
Q ss_pred EEe-cCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCeEEEEEec-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003459 138 TYK-GHTRGVNAIRFTP--DGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWD 213 (818)
Q Consensus 138 ~l~-~h~~~V~~l~fsp--dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h~~~I~sv~fspdg~~Lasgs~Dg~I~IwD 213 (818)
.+. .|...|.+++|+| ++++|++++.||.|++||+++++.+..+.. +...+.+++|+|++.+|++|+.||.|++||
T Consensus 119 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 119 EIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp EEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred EeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 554 6778899999999 999999999999999999999998776643 456899999999999999999999999999
Q ss_pred CCCCeEE-EEeCC-CCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccc---ccccee--eee-ecCCCEEEEE
Q 003459 214 LETFELI-GSAGP-ETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDV---GWSRLS--DLN-VHEGKLLGCS 285 (818)
Q Consensus 214 l~t~~~i-~~~~~-~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~---~~~~v~--~l~-~~~g~lLatg 285 (818)
+++++.+ ..+.. |..+|.+++|+|+|.+|++++++.+++||+...++...+.. +...+. .+. .++|++|+++
T Consensus 199 ~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 199 LSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp SSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred CCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence 9999877 77777 89999999999999999999988999999998776544332 112222 233 4789999999
Q ss_pred Ec-CCeEEEEEecCCC
Q 003459 286 YN-QSCVGVWVVDISR 300 (818)
Q Consensus 286 ~~-Dg~V~IWdvd~~~ 300 (818)
+. |+.|++|+++...
T Consensus 279 s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 279 SNESNSLTIYKFDKKT 294 (343)
T ss_dssp ETTTTEEEEEEECTTT
T ss_pred cCCCCcEEEEEEcccc
Confidence 98 9999999997654
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=3.9e-26 Score=255.32 Aligned_cols=276 Identities=12% Similarity=0.123 Sum_probs=194.7
Q ss_pred CCEEEEEEe---eCCCcEEEEEeCCCeEEEEECCCC----------ceEEEecCCCCCeEEEEEc---------------
Q 003459 17 STVNCLKIG---RKSSRVLVTGGEDHKVNLWAIGKP----------NAILSLSGHTSGIDSVSFD--------------- 68 (818)
Q Consensus 17 ~~V~~lafs---p~~~~lLatgs~Dg~V~lWdl~~~----------~~i~~l~~h~~~V~~l~fs--------------- 68 (818)
....++.|. |+...++++| .|+.|.+|+.... ..+..+ .+...+..+.|+
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGN 93 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEE-ECSSCEEEEEECTTCEEECC-------
T ss_pred CCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcc
Confidence 456677774 4455666655 4778999976211 111111 234445555543
Q ss_pred -----CCCCEEEEEECCCeEEEEECCCCeEEE-----EEcCCCCCeEEEEEeC--------CCCEEEEEECCCcEEEEEC
Q 003459 69 -----SSEVLVAAGAASGTIKLWDLEEAKIVR-----TLTGHRSNCISVDFHP--------FGEFFASGSLDTNLKIWDI 130 (818)
Q Consensus 69 -----pdg~~Lasgs~DG~I~IWDl~t~~~v~-----~l~~h~~~V~sv~fsp--------dg~~Lasgs~Dg~I~IwDl 130 (818)
+++.+|++++.|++|+|||+.++.... .+.+|...|.+++|+| ++++|++|+.|++|+|||+
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 345689999999999999999886543 3578999999999998 7889999999999999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCeEEEEE-------------------------ecC
Q 003459 131 RKKGCIHTYKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTAGKLLHDF-------------------------KCH 184 (818)
Q Consensus 131 ~~~~~i~~l~~h~~~V~~l~fspdg-~~L~sgs~Dg~I~IwDl~t~~~i~~~-------------------------~~h 184 (818)
.++.++..+..|...|.+++|+|++ .+|++++.||.|++||+++++..... .+|
T Consensus 174 ~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 253 (393)
T 4gq1_A 174 TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGI 253 (393)
T ss_dssp ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CC
T ss_pred CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccc
Confidence 9998888888899999999999987 47999999999999999987644322 246
Q ss_pred CCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEE------------------EEeC--CCCEEE
Q 003459 185 EGQIQCIDFH-PHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL------------------TFNP--DGRTLL 243 (818)
Q Consensus 185 ~~~I~sv~fs-pdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl------------------~fsp--dg~~La 243 (818)
...+.++.|. |++..|++++.|+++++||+..++....+..+...+..+ .|++ ++.+++
T Consensus 254 ~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 4gq1_A 254 ASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT 333 (393)
T ss_dssp SSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred cccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence 6778889987 799999999999999999998877665554443333333 2333 334556
Q ss_pred EEECC-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEE
Q 003459 244 CGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 244 sgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IW 294 (818)
+|+.+ .|++||..++.+......+...+..+.+ ++|++||+++++|.+.++
T Consensus 334 sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvr 386 (393)
T 4gq1_A 334 AHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTR 386 (393)
T ss_dssp EETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred EECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 66655 5999999998887766666667777765 799999999887654443
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.94 E-value=1.3e-24 Score=243.44 Aligned_cols=241 Identities=15% Similarity=0.094 Sum_probs=210.8
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLWDLEE 90 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IWDl~t 90 (818)
+.+|.+.|.+++|++ +++++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++++++++ .++.|++||+.+
T Consensus 165 ~~~~~~~v~~~~~~~-~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 165 YKKKLGFVETISIPE-HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp HHTTCCEEEEEEEGG-GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred ccccCCceeEEEEcC-CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 458899999999988 778999999999999999999999999999999999999999999886555 799999999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEE--------CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE-EEE
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGS--------LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV-VSG 161 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~~Lasgs--------~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L-~sg 161 (818)
++.+..+..+ ..+.+++|+|+++++++++ .||.|++||+.+++.+..+. |...+.+++|+|+++.+ +++
T Consensus 244 ~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 244 KLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp TEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEE
T ss_pred CcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEe
Confidence 9998888754 5599999999999999888 58899999999998877664 55678999999999765 556
Q ss_pred ECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC---------------CCeEEEEECCCCeEEEEeCCC
Q 003459 162 GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---------------DRTVKFWDLETFELIGSAGPE 226 (818)
Q Consensus 162 s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~---------------Dg~I~IwDl~t~~~i~~~~~~ 226 (818)
+.++.|++||+.+++.+..+. +...+.+++|+|++.+|++++. ||.|++||+.+++.+..+..
T Consensus 322 ~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~- 399 (433)
T 3bws_A 322 MCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA- 399 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-
T ss_pred cCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-
Confidence 889999999999999888876 6778999999999999888876 57999999999999888766
Q ss_pred CCCeeEEEEeCCCCEEEEEE--CCCEEEEEecC
Q 003459 227 TSGVRCLTFNPDGRTLLCGL--HESLKVFSWEP 257 (818)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs--~d~I~Vwd~~~ 257 (818)
...+.+++|+|+|++|++++ ++.+++|+++.
T Consensus 400 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 400 GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 45789999999999998775 44699999863
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=9e-25 Score=237.45 Aligned_cols=245 Identities=13% Similarity=0.157 Sum_probs=185.6
Q ss_pred eEEEEecCCCC----EEEEEEeeCCC--cEEEEEeCCCeEEEEECCCC---ceEEEecCCCCC-----------------
Q 003459 8 KLQEFVAHSST----VNCLKIGRKSS--RVLVTGGEDHKVNLWAIGKP---NAILSLSGHTSG----------------- 61 (818)
Q Consensus 8 kl~~~~~H~~~----V~~lafsp~~~--~lLatgs~Dg~V~lWdl~~~---~~i~~l~~h~~~----------------- 61 (818)
.+.+|+.-.+. +.++-|-..+. ..++++++ ..|++|+..++ ++++++.+|..+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 105 (356)
T 2w18_A 27 LVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVA 105 (356)
T ss_dssp EEEEECCCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEE
T ss_pred eeehhcCCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeee
Confidence 34556554442 44555544232 25666665 68999999888 788888877654
Q ss_pred --------eEEEEEcCC----CCEEEEEEC--------------------CCeEEEEEC-CCCeEEEEEcCCCCCeEEEE
Q 003459 62 --------IDSVSFDSS----EVLVAAGAA--------------------SGTIKLWDL-EEAKIVRTLTGHRSNCISVD 108 (818)
Q Consensus 62 --------V~~l~fspd----g~~Lasgs~--------------------DG~I~IWDl-~t~~~v~~l~~h~~~V~sv~ 108 (818)
|..++|+|+ +.++++++. |+.|++|++ .+++.+..+.+|...+..++
T Consensus 106 ~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~ 185 (356)
T 2w18_A 106 LGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILT 185 (356)
T ss_dssp ECSSSEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEE
T ss_pred eccccccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEE
Confidence 556666777 777777553 788888888 45777777788888888888
Q ss_pred EeC---CCCEEEEEECCCcEEEEECCCCeEEEEEecCC---CCeEEEEEcCCCCEE------------EEEECCCeEEEE
Q 003459 109 FHP---FGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT---RGVNAIRFTPDGRWV------------VSGGEDNTVKLW 170 (818)
Q Consensus 109 fsp---dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~---~~V~~l~fspdg~~L------------~sgs~Dg~I~Iw 170 (818)
|++ ++.+|++|+.|++|+|||+.++++++++.+|. ..+.+++|+|+|.++ ++|+.|++|++|
T Consensus 186 fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 186 FAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp EEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEE
T ss_pred eeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 888 67899999999999999999999999998654 367788999999876 567889999999
Q ss_pred ECCCCeEEEEE-----ecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCee-EEEEeCCCCEEEE
Q 003459 171 DLTAGKLLHDF-----KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVR-CLTFNPDGRTLLC 244 (818)
Q Consensus 171 Dl~t~~~i~~~-----~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~-sl~fspdg~~Las 244 (818)
|..+++.+..+ .+|...+.+..++ +.++++|+.|++|+|||+.+++++..+.+|...+. +++|+|||++|++
T Consensus 266 d~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 266 NPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp ETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred ECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 99999988765 2565555544444 78999999999999999999999999998877655 6899999999999
Q ss_pred EECC-CEEEEEe
Q 003459 245 GLHE-SLKVFSW 255 (818)
Q Consensus 245 gs~d-~I~Vwd~ 255 (818)
|+.| .|+||++
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 9877 5999986
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=1.8e-24 Score=238.39 Aligned_cols=246 Identities=11% Similarity=0.106 Sum_probs=189.5
Q ss_pred EEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEE-EEEEC
Q 003459 43 LWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFF-ASGSL 121 (818)
Q Consensus 43 lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~L-asgs~ 121 (818)
||++.+.+.+..+..|...|.+++|+|++++|++|+.+| +++||+.+++.......+ .+..++|.++++++ ++++.
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGV 79 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSS
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECC
Confidence 466666777777889999999999999999999988775 789999988776655432 47788899888877 56777
Q ss_pred CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-eEEEEEecCCCCEEEEEEeCCCCEE
Q 003459 122 DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG-KLLHDFKCHEGQIQCIDFHPHEFLL 200 (818)
Q Consensus 122 Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~-~~i~~~~~h~~~I~sv~fspdg~~L 200 (818)
|+.|++||+.+++++..+. +...|.+++|+++. ++++ .|+.|++||+.++ +.+..+.. ....+++++ .++
T Consensus 80 d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 80 KEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred ccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 8999999999999999887 66789999999764 4444 4889999999988 66666554 445567777 466
Q ss_pred EE--EeCCCeEEEEECCCCe---------------E-EEEeCCCCCCeeEEEEeCCCCEEEEEECC-C-EEEEEecCCce
Q 003459 201 AT--GSADRTVKFWDLETFE---------------L-IGSAGPETSGVRCLTFNPDGRTLLCGLHE-S-LKVFSWEPIRC 260 (818)
Q Consensus 201 as--gs~Dg~I~IwDl~t~~---------------~-i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~-I~Vwd~~~~~~ 260 (818)
++ |+.||.|++||+.+++ + +..+.+|...|.+++|+|+|++|++|+.+ . ++|||+.++++
T Consensus 151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 65 5889999999999865 2 67788999999999999999999999877 4 99999999998
Q ss_pred ecccc-c-cccceeeeee-cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 261 HDAVD-V-GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 261 ~~~~~-~-~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
...+. . +...+..+.+ ++|++|++++.|+.|++|++....
T Consensus 231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 88876 2 5667777765 789999999999999999998764
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=8e-25 Score=246.94 Aligned_cols=284 Identities=13% Similarity=0.058 Sum_probs=223.2
Q ss_pred CCEEEEEEeeCCCcEEEEEe----CCC----eEEEEEC--CCCceE--EEecCCCCCeEEEEEcC--------------C
Q 003459 17 STVNCLKIGRKSSRVLVTGG----EDH----KVNLWAI--GKPNAI--LSLSGHTSGIDSVSFDS--------------S 70 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs----~Dg----~V~lWdl--~~~~~i--~~l~~h~~~V~~l~fsp--------------d 70 (818)
..|...+|.+.+..++++|+ .|| .|+|||+ .+++.+ ..+.+|...+..+++.+ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 46777888888888888886 467 8999999 888887 45888888888877764 1
Q ss_pred CCEEEEEECC------CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC---cEEEEECCCCeEEEEEec
Q 003459 71 EVLVAAGAAS------GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT---NLKIWDIRKKGCIHTYKG 141 (818)
Q Consensus 71 g~~Lasgs~D------G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg---~I~IwDl~~~~~i~~l~~ 141 (818)
+..++.++.+ +.|++||+.. .....+.+|...+.+++|+|+|++|++++.++ .|++||+.+++.. .+..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 5566666554 7999999974 44567777999999999999999999999885 9999999988775 5667
Q ss_pred CCCCeEEEEEcCCCCEEE-EEECCCe--EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC-CC--eEEEEECC
Q 003459 142 HTRGVNAIRFTPDGRWVV-SGGEDNT--VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-DR--TVKFWDLE 215 (818)
Q Consensus 142 h~~~V~~l~fspdg~~L~-sgs~Dg~--I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~-Dg--~I~IwDl~ 215 (818)
|...+.+++|+|||++|+ +++.++. |++||+.+++. ..+..|...+.+++|+|+|.+|++++. ++ .|++||+.
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN 299 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC
Confidence 888999999999999888 5555554 99999998876 556678889999999999999988886 44 78888998
Q ss_pred CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC----CEEEEEecCCceeccccccccceeeee-ecCCCEEEEEEcCC-
Q 003459 216 TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEPIRCHDAVDVGWSRLSDLN-VHEGKLLGCSYNQS- 289 (818)
Q Consensus 216 t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd~~~~~~~~~~~~~~~~v~~l~-~~~g~lLatg~~Dg- 289 (818)
+++.. .+..+...+.+++|+|||++|++++.+ .|.+|+.++++...... +. .+..+. .++|+.|++++.++
T Consensus 300 ~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~-~~-~~~~~~~spdg~~l~~~s~~~~ 376 (415)
T 2hqs_A 300 GGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSS-TF-LDETPSLAPNGTMVIYSSSQGM 376 (415)
T ss_dssp SSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCC-SS-SCEEEEECTTSSEEEEEEEETT
T ss_pred CCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecC-CC-CcCCeEEcCCCCEEEEEEcCCC
Confidence 87743 344556778999999999999977643 58888888777644332 22 333443 47999988887776
Q ss_pred --eEEEEEecCCCceeeee
Q 003459 290 --CVGVWVVDISRIEPYTI 306 (818)
Q Consensus 290 --~V~IWdvd~~~~~~~~~ 306 (818)
.|++|+++.+....+..
T Consensus 377 ~~~l~~~d~~g~~~~~l~~ 395 (415)
T 2hqs_A 377 GSVLNLVSTDGRFKARLPA 395 (415)
T ss_dssp EEEEEEEETTSCCEEECCC
T ss_pred ccEEEEEECCCCcEEEeeC
Confidence 79999998777665443
No 127
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=3.6e-24 Score=232.73 Aligned_cols=175 Identities=11% Similarity=0.162 Sum_probs=148.2
Q ss_pred CCeEEEEEC-CCCceEEEecCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCeEEEEEcCCC---CCeEEEEEe
Q 003459 38 DHKVNLWAI-GKPNAILSLSGHTSGIDSVSFDS---SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR---SNCISVDFH 110 (818)
Q Consensus 38 Dg~V~lWdl-~~~~~i~~l~~h~~~V~~l~fsp---dg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~---~~V~sv~fs 110 (818)
|+.|++|++ .+++.+..+.+|...+..++|++ ++.+|++|+.|++|+|||+.+++.++++.+|. ..+.+++|+
T Consensus 156 d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafS 235 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYS 235 (356)
T ss_dssp TCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEE
T ss_pred CCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEEC
Confidence 888999998 55788888888999999999988 77899999999999999999999999998654 367788999
Q ss_pred CCCCEE------------EEEECCCcEEEEECCCCeEEEEE-----ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 111 PFGEFF------------ASGSLDTNLKIWDIRKKGCIHTY-----KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT 173 (818)
Q Consensus 111 pdg~~L------------asgs~Dg~I~IwDl~~~~~i~~l-----~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~ 173 (818)
|+|.++ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +.++++++.|++|+|||+.
T Consensus 236 pdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~ 313 (356)
T 2w18_A 236 EMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLL 313 (356)
T ss_dssp ETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred CCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECC
Confidence 999876 56788999999999999988766 3666665555554 8899999999999999999
Q ss_pred CCeEEEEEecCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEEC
Q 003459 174 AGKLLHDFKCHEGQIQ-CIDFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 174 t~~~i~~~~~h~~~I~-sv~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
+++++.++.+|...+. +++|+|+|.+|++|+.|++|+|||+
T Consensus 314 tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 314 LGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999998877655 6899999999999999999999995
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=7.2e-23 Score=239.27 Aligned_cols=295 Identities=13% Similarity=0.163 Sum_probs=234.6
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEEC--CCCceEEEecCCCCCeEEEEEcC----CCCEEEEEEC-
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAI--GKPNAILSLSGHTSGIDSVSFDS----SEVLVAAGAA- 79 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl--~~~~~i~~l~~h~~~V~~l~fsp----dg~~Lasgs~- 79 (818)
..+..+..+.. +.+++|+| ++++|++++.|+.|.+||+ .+++.+..+. +...+..++|+| +|++|++++.
T Consensus 170 ~~~~~i~~g~~-~~~v~~sp-dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~ 246 (543)
T 1nir_A 170 KIVKVIDTGYA-VHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYW 246 (543)
T ss_dssp CEEEEEECSTT-EEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred eEEEEEecCcc-cceEEECC-CCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEcc
Confidence 34566663333 89999999 6778999999999999999 8888888888 455689999999 9999999885
Q ss_pred CCeEEEEECCCCeEEEEEcCC-----------CCCeEEEEEeCCCCE-EEEEECCCcEEEEECCCCeEEE--EEecCCCC
Q 003459 80 SGTIKLWDLEEAKIVRTLTGH-----------RSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIH--TYKGHTRG 145 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h-----------~~~V~sv~fspdg~~-Lasgs~Dg~I~IwDl~~~~~i~--~l~~h~~~ 145 (818)
+++|.+||..+++++..+..+ ...+..+.++|++.. +++...++.|.+||+.+.+.+. .+. +...
T Consensus 247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~ 325 (543)
T 1nir_A 247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPF 325 (543)
T ss_dssp SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSS
T ss_pred CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcC
Confidence 899999999999999888642 226889999998775 5566678999999998765443 443 5667
Q ss_pred eEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEec----CCCCEEEEEEeCC-CCEEEEEe-CCCeEEEEECCC--
Q 003459 146 VNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKLLHDFKC----HEGQIQCIDFHPH-EFLLATGS-ADRTVKFWDLET-- 216 (818)
Q Consensus 146 V~~l~fspdg~~L~sgs-~Dg~I~IwDl~t~~~i~~~~~----h~~~I~sv~fspd-g~~Lasgs-~Dg~I~IwDl~t-- 216 (818)
+..+.|+|+|++|++++ .++.|.+||+.+++++..+.. |.+....+ ++|+ +.+++++. .|++|.+||+.+
T Consensus 326 ~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~ 404 (543)
T 1nir_A 326 LHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKN 404 (543)
T ss_dssp CCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred ccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCC
Confidence 88999999999877665 588999999999999988874 55444443 5787 66777775 589999999998
Q ss_pred -----CeEEEEeCCCCCCeeEEEEeCCCCEEEEEE--------CCCEEEEEecCCcee-ccccc--------cccceeee
Q 003459 217 -----FELIGSAGPETSGVRCLTFNPDGRTLLCGL--------HESLKVFSWEPIRCH-DAVDV--------GWSRLSDL 274 (818)
Q Consensus 217 -----~~~i~~~~~~~~~I~sl~fspdg~~Lasgs--------~d~I~Vwd~~~~~~~-~~~~~--------~~~~v~~l 274 (818)
++++..+..+...+..+.|+|||++|++++ ++.|.|||.++.++. ..+.+ +...+..+
T Consensus 405 ~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 484 (543)
T 1nir_A 405 HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP 484 (543)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEE
T ss_pred CchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEec
Confidence 899999999988899999999999999986 458999999988776 44322 22333344
Q ss_pred e-ecCCCEEEEEE-----cCCeEEEEEecCCCceeeee
Q 003459 275 N-VHEGKLLGCSY-----NQSCVGVWVVDISRIEPYTI 306 (818)
Q Consensus 275 ~-~~~g~lLatg~-----~Dg~V~IWdvd~~~~~~~~~ 306 (818)
. .++|+.|.++. .|+.|.|||..+.++...+.
T Consensus 485 ~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 485 EYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 3 47898888663 37999999999998765443
No 129
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2.3e-22 Score=216.80 Aligned_cols=278 Identities=13% Similarity=0.095 Sum_probs=208.1
Q ss_pred EEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCeE-EEEEcC
Q 003459 22 LKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTIKLWDLEEAKI-VRTLTG 99 (818)
Q Consensus 22 lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I~IWDl~t~~~-v~~l~~ 99 (818)
..|.++++.++++++.++.|.+||..+++....+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ...+..
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 34666677788999999999999999999988888776677 9999999997777666 89999999999987 777776
Q ss_pred CCCCeEEEEEeCCCCEEEEEECCC---cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCe-EEEEECCC
Q 003459 100 HRSNCISVDFHPFGEFFASGSLDT---NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG-GEDNT-VKLWDLTA 174 (818)
Q Consensus 100 h~~~V~sv~fspdg~~Lasgs~Dg---~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sg-s~Dg~-I~IwDl~t 174 (818)
+.....+++|+|+|++++++..++ .|++||+.+++.+..+..+ ....+++|+|+|++|+++ ..++. |.+|++..
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 666666699999999999655553 8999999999988887754 457899999999866555 55578 99999876
Q ss_pred CeEEE----EEecCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCeE---EEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 175 GKLLH----DFKCHEGQIQCIDFHPHEFLLATG-SADRTVKFWDLETFEL---IGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 175 ~~~i~----~~~~h~~~I~sv~fspdg~~Lasg-s~Dg~I~IwDl~t~~~---i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
...+. ...........++|+|+|++++++ ..++.|++||+.+++. +..+... ..+..++|+|||++|+++.
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~ 239 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLT 239 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEE
Confidence 43321 112334568999999999866555 4689999999998887 6666543 5678999999999888765
Q ss_pred CC--CEEEEEecCCce--ecccccc----cccee----eeeecCCCEEEEEEc-CCeEEEEEecCCCce
Q 003459 247 HE--SLKVFSWEPIRC--HDAVDVG----WSRLS----DLNVHEGKLLGCSYN-QSCVGVWVVDISRIE 302 (818)
Q Consensus 247 ~d--~I~Vwd~~~~~~--~~~~~~~----~~~v~----~l~~~~g~lLatg~~-Dg~V~IWdvd~~~~~ 302 (818)
.+ .+.+||..+++. ...+... ..... ....++|+.|++++. ++.|.+|++....+.
T Consensus 240 ~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 240 ESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp SSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence 43 588999887766 2211111 11111 134578888766555 569999999876544
No 130
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=1.9e-21 Score=210.67 Aligned_cols=271 Identities=10% Similarity=0.035 Sum_probs=216.0
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeC------CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGE------DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLWD 87 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~------Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IWD 87 (818)
....+..++|+|++..++++... ++.|.+||..+++.+..+.. ...+.+++|++++++++++ ..++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 44578899999955554444433 67899999999998888764 3457889999999966555 4479999999
Q ss_pred CCCCeEEEEEcCCCCC---------eEEEEEeCCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003459 88 LEEAKIVRTLTGHRSN---------CISVDFHPFGEFFASGS--LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~---------V~sv~fspdg~~Lasgs--~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~ 156 (818)
+.+++.+..+..+... +.+++|+|+++++++++ .++.|++||+.+++.+..+..+...+.+++|+|+|+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 9999998888754422 68899999999877776 478899999999999988876666688999999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEec----CCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCeEEEEeCCCCCCee
Q 003459 157 WVVSGGEDNTVKLWDLTAGKLLHDFKC----HEGQIQCIDFHPHEFLLATGSA-DRTVKFWDLETFELIGSAGPETSGVR 231 (818)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~----h~~~I~sv~fspdg~~Lasgs~-Dg~I~IwDl~t~~~i~~~~~~~~~I~ 231 (818)
+|++++.++.|.+||+.+++.+..+.. +...+.+++|+|++.++++++. ++.|.+||+.+++.+..+.... ..
T Consensus 198 ~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~ 275 (353)
T 3vgz_A 198 RLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE--SL 275 (353)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS--CC
T ss_pred EEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC--Cc
Confidence 999999999999999999998888764 4556889999999997777665 4899999999999887776543 26
Q ss_pred EEEEeCCCCEEEEEEC--CCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcC
Q 003459 232 CLTFNPDGRTLLCGLH--ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQ 288 (818)
Q Consensus 232 sl~fspdg~~Lasgs~--d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~D 288 (818)
+++|+|+|++++++.. +.+.+||..+.+....+.....+......++|++|+++..+
T Consensus 276 ~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 276 AVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred eEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 7999999998776653 46999999988887777665544433445788877766555
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=2.5e-22 Score=226.47 Aligned_cols=241 Identities=11% Similarity=0.084 Sum_probs=191.7
Q ss_pred EEEecCCCCEEEEEEeeC--------------CCcEEEEEeCC------CeEEEEECCCCceEEEecCCCCCeEEEEEcC
Q 003459 10 QEFVAHSSTVNCLKIGRK--------------SSRVLVTGGED------HKVNLWAIGKPNAILSLSGHTSGIDSVSFDS 69 (818)
Q Consensus 10 ~~~~~H~~~V~~lafsp~--------------~~~lLatgs~D------g~V~lWdl~~~~~i~~l~~h~~~V~~l~fsp 69 (818)
..+.+|...+.++++.+. +.+ ++.++.+ +.|++||+. +.....+.+|...|.+++|+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~-l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Sp 188 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTR-IAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSP 188 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCE-EEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCE-EEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcC
Confidence 457778877777777641 344 4444443 799999996 455677788999999999999
Q ss_pred CCCEEEEEECCC---eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEE-EEECCCc--EEEEECCCCeEEEEEecCC
Q 003459 70 SEVLVAAGAASG---TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA-SGSLDTN--LKIWDIRKKGCIHTYKGHT 143 (818)
Q Consensus 70 dg~~Lasgs~DG---~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~La-sgs~Dg~--I~IwDl~~~~~i~~l~~h~ 143 (818)
+|++|++++.++ .|++||+.+++.. .+..|...+.+++|+|+|++|+ +++.++. |++||+.+++. ..+..|.
T Consensus 189 dg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~ 266 (415)
T 2hqs_A 189 DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGR 266 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCS
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCC
Confidence 999999999885 9999999998875 4666888999999999999888 5655554 99999988775 5677788
Q ss_pred CCeEEEEEcCCCCEEEEEECC-C--eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEECCCC
Q 003459 144 RGVNAIRFTPDGRWVVSGGED-N--TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD---RTVKFWDLETF 217 (818)
Q Consensus 144 ~~V~~l~fspdg~~L~sgs~D-g--~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D---g~I~IwDl~t~ 217 (818)
..+.+++|+|||++|++++.+ + .|++||+.+++. ..+..+...+.+++|+|+|.+|++++.+ ..|++||+.++
T Consensus 267 ~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 267 SNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 899999999999999988864 4 688889988764 3445566788999999999999988764 58999999998
Q ss_pred eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC----CEEEEEecC
Q 003459 218 ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----SLKVFSWEP 257 (818)
Q Consensus 218 ~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d----~I~Vwd~~~ 257 (818)
+.. .+..+. .+.+++|+|||++|++++.+ .|.+|+++.
T Consensus 346 ~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 346 GVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp CEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred CEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 874 344443 78999999999998877544 366667653
No 132
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.2e-21 Score=210.38 Aligned_cols=269 Identities=13% Similarity=0.062 Sum_probs=211.8
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCC--CeEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEcC-C----C
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTS--GIDSVSFDSSEVLVAA-GAASGTIKLWDLEEAKIVRTLTG-H----R 101 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~--~V~~l~fspdg~~Las-gs~DG~I~IWDl~t~~~v~~l~~-h----~ 101 (818)
.+|++++.++.|.+||..+++.+..+..... .+.+++|+|+++++++ +..++.|.+||+.+++.+..+.. + .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 4789999999999999999988887763322 4789999999986654 55578999999999998877763 2 1
Q ss_pred CCeEEEEEeCCCCEEEEEE------------CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 003459 102 SNCISVDFHPFGEFFASGS------------LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKL 169 (818)
Q Consensus 102 ~~V~sv~fspdg~~Lasgs------------~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~I 169 (818)
..+..++|+|+|+++++++ .++.|++||+.+++.+..+.. ...+.+++|+|+|++|+++ ++.|++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 2577899999999988886 579999999999988887764 4557889999999988888 689999
Q ss_pred EECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCC------------------------eEEEEECCCCeEE-EEeC
Q 003459 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR------------------------TVKFWDLETFELI-GSAG 224 (818)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg------------------------~I~IwDl~t~~~i-~~~~ 224 (818)
||+.+++.+..+..+... ..+.|+|++..|+..+.++ .|.+||+.+++.. ..+.
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 999999988877654311 1237899988665544332 4789999998764 2234
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 225 PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
.+...+.+++|+|||++++++ ++.+.+||.++.+....+..+.........++|++|++++.++.|.+||+++++...
T Consensus 238 ~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~ 315 (337)
T 1pby_B 238 IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG 315 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred CCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEE
Confidence 455678899999999999988 678999999988877666655554444455889999888899999999999887544
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=3e-21 Score=207.70 Aligned_cols=266 Identities=15% Similarity=0.261 Sum_probs=192.2
Q ss_pred CcEEEEEeCCCeEEEEECC-CC--ceEEEecCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECC--CCe--EEEEEcCC
Q 003459 29 SRVLVTGGEDHKVNLWAIG-KP--NAILSLSGHTSGIDSVSFDSSEVLVAAGAAS-GTIKLWDLE--EAK--IVRTLTGH 100 (818)
Q Consensus 29 ~~lLatgs~Dg~V~lWdl~-~~--~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D-G~I~IWDl~--t~~--~v~~l~~h 100 (818)
..++++++.|+.|++|++. ++ +.+.. ..|...+.+++|+|++++|++++.+ +.|.+|++. +++ .+..+..+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 83 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP 83 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC
Confidence 3455555789999999985 33 23333 3467789999999999999988887 999999997 554 44455544
Q ss_pred CCCeEEEEEeCCCCEEEEEEC-CCcEEEEECC---CCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC-
Q 003459 101 RSNCISVDFHPFGEFFASGSL-DTNLKIWDIR---KKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTA- 174 (818)
Q Consensus 101 ~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~---~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~IwDl~t- 174 (818)
. .+..++|+|++++|++++. ++.|++||+. ..+.+..+..+ ..+.+++|+|+|++|++++ .++.|.+||+.+
T Consensus 84 ~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 84 G-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp S-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred C-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 4 7889999999998877765 7889999994 34455555543 4588999999999888887 899999999987
Q ss_pred CeEEE----EEec-CCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCC--CeE--EEEeC---CC---CCCeeEEEEeCC
Q 003459 175 GKLLH----DFKC-HEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLET--FEL--IGSAG---PE---TSGVRCLTFNPD 238 (818)
Q Consensus 175 ~~~i~----~~~~-h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t--~~~--i~~~~---~~---~~~I~sl~fspd 238 (818)
++... .+.. ....+.+++|+|++.+|++++ .++.|.+||+.. ++. ..... .. ...+.+++|+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 65432 2232 345788999999999776555 789999999953 332 22221 11 235678999999
Q ss_pred CCEEEEEE--CCCEEEEEecC----Cceeccccccccceeeee-ecCCCEEEEEE-cCCeEEEEEecC
Q 003459 239 GRTLLCGL--HESLKVFSWEP----IRCHDAVDVGWSRLSDLN-VHEGKLLGCSY-NQSCVGVWVVDI 298 (818)
Q Consensus 239 g~~Lasgs--~d~I~Vwd~~~----~~~~~~~~~~~~~v~~l~-~~~g~lLatg~-~Dg~V~IWdvd~ 298 (818)
|++|+++. ++.+.+|+++. .+....+..... +..+. .++|++|+++. .++.|.+|+++.
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 99888654 34699999983 233333444444 33444 47889888777 689999997774
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=2.7e-22 Score=241.44 Aligned_cols=278 Identities=14% Similarity=0.097 Sum_probs=212.9
Q ss_pred CCCEEEEEEeeCCCcEEEEEeC-CC-----eEEEEECCCCceEEEecCCCCC------------------------eEEE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGE-DH-----KVNLWAIGKPNAILSLSGHTSG------------------------IDSV 65 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~-Dg-----~V~lWdl~~~~~i~~l~~h~~~------------------------V~~l 65 (818)
...|.+++|+| ++++|++++. |+ .|++||+.+++....+..+... |.++
T Consensus 36 ~~~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 45799999999 5667888877 88 8999999998887777654333 7899
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC
Q 003459 66 SFDSSEVLVAAGAASGTIKLWDLEEAK--IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT 143 (818)
Q Consensus 66 ~fspdg~~Lasgs~DG~I~IWDl~t~~--~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~ 143 (818)
+|+|||++|++++. +.|++||+.++. ....+..|...+..++|+|+|++|++++ ++.|++||+.+++.......+.
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~ 192 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGS 192 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCc
Confidence 99999999999886 999999999872 3445667888899999999999999987 5689999999887665544443
Q ss_pred CC----------------eEEEEEcCCCCEEEEEECCC---------------------------------eEEEEECCC
Q 003459 144 RG----------------VNAIRFTPDGRWVVSGGEDN---------------------------------TVKLWDLTA 174 (818)
Q Consensus 144 ~~----------------V~~l~fspdg~~L~sgs~Dg---------------------------------~I~IwDl~t 174 (818)
.. +..++|+|||++|++++.|+ .|++||+.+
T Consensus 193 ~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~ 272 (741)
T 2ecf_A 193 TTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAE 272 (741)
T ss_dssp SSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSST
T ss_pred cceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCC
Confidence 32 47799999999999988765 889999998
Q ss_pred -CeEEEEEe--cCCCCEEEEEEeCCCCEEEEEeC-----CCeEEEEECCCCeEEEEeCCCCC----CeeEEEEeCCCCEE
Q 003459 175 -GKLLHDFK--CHEGQIQCIDFHPHEFLLATGSA-----DRTVKFWDLETFELIGSAGPETS----GVRCLTFNPDGRTL 242 (818)
Q Consensus 175 -~~~i~~~~--~h~~~I~sv~fspdg~~Lasgs~-----Dg~I~IwDl~t~~~i~~~~~~~~----~I~sl~fspdg~~L 242 (818)
++...... .|...+..++| |||++|++++. +..|++||+.+++....+..+.. .+.+++|+|||+++
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 351 (741)
T 2ecf_A 273 QAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSIL 351 (741)
T ss_dssp TCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEE
T ss_pred CCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEE
Confidence 87655433 36678999999 99999987764 56899999999987666544432 45689999999988
Q ss_pred EEEECC-CEEEEEecC-Cceeccccc-cccceeee-eecCCCEEEE-EEcCC--eEEEEEecC
Q 003459 243 LCGLHE-SLKVFSWEP-IRCHDAVDV-GWSRLSDL-NVHEGKLLGC-SYNQS--CVGVWVVDI 298 (818)
Q Consensus 243 asgs~d-~I~Vwd~~~-~~~~~~~~~-~~~~v~~l-~~~~g~lLat-g~~Dg--~V~IWdvd~ 298 (818)
+++..+ ..+||.++. +. ...+.. .+...... ..++|+.|+. +..++ .++||+++.
T Consensus 352 ~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 352 WSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp EEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred EEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 877665 478888873 33 333333 33332332 4578887654 44455 899999875
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=1.1e-21 Score=229.23 Aligned_cols=275 Identities=12% Similarity=0.050 Sum_probs=220.8
Q ss_pred EEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC--CCCeEEEEEcCC
Q 003459 23 KIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL--EEAKIVRTLTGH 100 (818)
Q Consensus 23 afsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl--~t~~~v~~l~~h 100 (818)
+|+| ++.++++++.|++|.+||..+++.+..+..+.. +.+++|+|++++|++++.|+.|.+||+ .+++.+..+. +
T Consensus 144 ~~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~ 220 (543)
T 1nir_A 144 DLDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-I 220 (543)
T ss_dssp CCCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-C
T ss_pred ccCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-c
Confidence 4788 568899999999999999999999999984333 899999999999999999999999999 8899998888 4
Q ss_pred CCCeEEEEEeC----CCCEEEEEEC-CCcEEEEECCCCeEEEEEecC-----------CCCeEEEEEcCCCCE-EEEEEC
Q 003459 101 RSNCISVDFHP----FGEFFASGSL-DTNLKIWDIRKKGCIHTYKGH-----------TRGVNAIRFTPDGRW-VVSGGE 163 (818)
Q Consensus 101 ~~~V~sv~fsp----dg~~Lasgs~-Dg~I~IwDl~~~~~i~~l~~h-----------~~~V~~l~fspdg~~-L~sgs~ 163 (818)
...+..++|+| +|+++++++. +++|.+||..+++++..+..+ ...+..+.++|++.. +++...
T Consensus 221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 56689999999 9999998884 899999999999999888652 236889999997665 556667
Q ss_pred CCeEEEEECCCCeEEE--EEecCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEeCC----CCCCeeEEEEe
Q 003459 164 DNTVKLWDLTAGKLLH--DFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGP----ETSGVRCLTFN 236 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~--~~~~h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t~~~i~~~~~----~~~~I~sl~fs 236 (818)
++.|.+||+.+.+.+. .+. +...+..+.|+|+|++|++++ .+++|.+||+.+++++..+.. |.+....+ ++
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~ 378 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VH 378 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EE
T ss_pred CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CC
Confidence 8999999998865433 443 556688899999999776554 588999999999999887753 43323333 57
Q ss_pred CC-CCEEEEEE--CCCEEEEEecC-------Cceeccccccccc-eeeeeecCCCEEEEEE-------cCCeEEEEEecC
Q 003459 237 PD-GRTLLCGL--HESLKVFSWEP-------IRCHDAVDVGWSR-LSDLNVHEGKLLGCSY-------NQSCVGVWVVDI 298 (818)
Q Consensus 237 pd-g~~Lasgs--~d~I~Vwd~~~-------~~~~~~~~~~~~~-v~~l~~~~g~lLatg~-------~Dg~V~IWdvd~ 298 (818)
|+ |.+++++. ++.|.||+.++ .++.+.+..+... +.....++++.|+++. .++.|.|||+++
T Consensus 379 p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~ 458 (543)
T 1nir_A 379 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 458 (543)
T ss_dssp TTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred CCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCC
Confidence 77 66666664 45799999998 7777777765443 3333458999999987 378999999998
Q ss_pred CCce
Q 003459 299 SRIE 302 (818)
Q Consensus 299 ~~~~ 302 (818)
.+..
T Consensus 459 ~~~~ 462 (543)
T 1nir_A 459 LDAK 462 (543)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 8854
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=1.5e-21 Score=204.34 Aligned_cols=237 Identities=14% Similarity=0.162 Sum_probs=185.6
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-CceEEEecCC-CCCeEEEEEcCCCCEEEEEEC--C--C
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLSGH-TSGIDSVSFDSSEVLVAAGAA--S--G 81 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~-~~~i~~l~~h-~~~V~~l~fspdg~~Lasgs~--D--G 81 (818)
++..+..|...|.+++|+| ++++|++++ ++.|++||+.+ ++.......| ...+.+++|+|++++|++++. + .
T Consensus 33 ~~~~~~~~~~~v~~~~~sp-dg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 110 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSP-DGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKS 110 (297)
T ss_dssp EEEEEEEESSCCEEEEECT-TSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSC
T ss_pred ceeeeccCCcceEeeEECC-CCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcc
Confidence 3446677899999999999 566777776 78999999998 7777666665 367899999999999999983 3 4
Q ss_pred eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEE-EEECCCcEEEEECC-CCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003459 82 TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA-SGSLDTNLKIWDIR-KKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 82 ~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~La-sgs~Dg~I~IwDl~-~~~~i~~l~~h~~~V~~l~fspdg~~L~ 159 (818)
.|.+|++.+++ ...+..+ ..+..++|+|++++|+ ++..++.+++|++. .......+..+...+.+++|+|+|++|+
T Consensus 111 ~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 111 AIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp EEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEE
T ss_pred eEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEE
Confidence 45555555555 3444433 3488999999999877 67789999999853 2234456667888899999999999888
Q ss_pred EEE-CCCeEEEEECC-CCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC-----------CeEEEEECCCCeE--EEEeC
Q 003459 160 SGG-EDNTVKLWDLT-AGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD-----------RTVKFWDLETFEL--IGSAG 224 (818)
Q Consensus 160 sgs-~Dg~I~IwDl~-t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D-----------g~I~IwDl~t~~~--i~~~~ 224 (818)
+++ .++.+.+|++. .+..+..+..+...+.++.|+|++.+|++++.+ +.|++||+.+++. +..+.
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~ 268 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF 268 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE
T ss_pred EEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC
Confidence 776 48899999886 455667777777889999999999999888765 5699999998765 44444
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECC
Q 003459 225 PETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
.+...+.+++|+|+|++|++++.+
T Consensus 269 ~~~~~~~~~~~spdg~~l~~~~~~ 292 (297)
T 2ojh_A 269 GGQGTMNSPNWSPDGDEFAYVRYF 292 (297)
T ss_dssp ESTTTSCSCCBCTTSSEEEEEEEC
T ss_pred CCCcccccceECCCCCEEEEEEec
Confidence 677789999999999999877654
No 137
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=3.5e-20 Score=199.67 Aligned_cols=250 Identities=14% Similarity=0.164 Sum_probs=188.9
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-EEEecCCCCCeEEEEEcCCCCEEEEEECCC---eE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-ILSLSGHTSGIDSVSFDSSEVLVAAGAASG---TI 83 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~-i~~l~~h~~~V~~l~fspdg~~Lasgs~DG---~I 83 (818)
.+..+..+...+ +++|+|++..+++++..++.|.+||..+++. ...+..+..+..+++|+|++++|+++..++ .|
T Consensus 32 ~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i 110 (331)
T 3u4y_A 32 ILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNM 110 (331)
T ss_dssp EEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEE
T ss_pred eeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccE
Confidence 344555666677 9999996655666666689999999998887 777777777766699999999998655553 89
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEE-ECCCc-EEEEECCCCeEEE----EEecCCCCeEEEEEcCCCCE
Q 003459 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASG-SLDTN-LKIWDIRKKGCIH----TYKGHTRGVNAIRFTPDGRW 157 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasg-s~Dg~-I~IwDl~~~~~i~----~l~~h~~~V~~l~fspdg~~ 157 (818)
.+||+.+++.+..+.. .....+++|+|+|++++++ ..++. |.+|++.....+. ...........++|+|+|++
T Consensus 111 ~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~ 189 (331)
T 3u4y_A 111 QSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF 189 (331)
T ss_dssp EEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE
T ss_pred EEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE
Confidence 9999999999888774 4456899999999865554 55688 9999987644331 22234456899999999997
Q ss_pred EEEEE-CCCeEEEEECCCCeE---EEEEecCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeE--EEEeCCC----
Q 003459 158 VVSGG-EDNTVKLWDLTAGKL---LHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFEL--IGSAGPE---- 226 (818)
Q Consensus 158 L~sgs-~Dg~I~IwDl~t~~~---i~~~~~h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t~~~--i~~~~~~---- 226 (818)
+++++ .++.|.+||+.+++. +..+.. ...+..++|+|+|++|++++ .++.|.+||+.+++. +..+...
T Consensus 190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 268 (331)
T 3u4y_A 190 AFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLID 268 (331)
T ss_dssp EEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCC
T ss_pred EEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccC
Confidence 76655 588999999999887 777764 46678999999999776665 577899999999887 3333221
Q ss_pred CC---CeeEEEEeCCCCEEEEEECC--CEEEEEecCCce
Q 003459 227 TS---GVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRC 260 (818)
Q Consensus 227 ~~---~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~ 260 (818)
.. ....++|+|||++|+++..+ .+.+|++.....
T Consensus 269 ~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 269 PRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 22 22568999999999876554 599999876543
No 138
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=4.3e-21 Score=200.81 Aligned_cols=252 Identities=11% Similarity=0.128 Sum_probs=189.0
Q ss_pred EEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEcCC-CCCeEEEEEeC
Q 003459 34 TGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-AKIVRTLTGH-RSNCISVDFHP 111 (818)
Q Consensus 34 tgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t-~~~v~~l~~h-~~~V~sv~fsp 111 (818)
.++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++ ++.|++||+.+ ++....+..+ ...+.+++|+|
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 3467899999999887765 4555889999999999999999986 88999999999 8877766665 36788999999
Q ss_pred CCCEEEEEEC--CC--cEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEE-EEECCCeEEEEECCC-CeEEEEEecCC
Q 003459 112 FGEFFASGSL--DT--NLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVV-SGGEDNTVKLWDLTA-GKLLHDFKCHE 185 (818)
Q Consensus 112 dg~~Lasgs~--Dg--~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~-sgs~Dg~I~IwDl~t-~~~i~~~~~h~ 185 (818)
++++|++++. ++ .|+.|++.++. ...+..+ ..+..++|+|+|++|+ ++..++.+.+|++.. +.....+..+.
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 172 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGE 172 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSS
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCC
Confidence 9999999983 33 45555555554 3444433 3489999999999887 777899999998532 23345566677
Q ss_pred CCEEEEEEeCCCCEEEEEe-CCCeEEEEECC-CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC------------CEE
Q 003459 186 GQIQCIDFHPHEFLLATGS-ADRTVKFWDLE-TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE------------SLK 251 (818)
Q Consensus 186 ~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~-t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d------------~I~ 251 (818)
..+.++.|+|++.+|+.++ .++.+++|++. .+..+..+..+...+.++.|+|+|++|++++.+ .+.
T Consensus 173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~ 252 (297)
T 2ojh_A 173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ 252 (297)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred CccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence 8899999999999888766 58899999886 455666777777789999999999999876543 388
Q ss_pred EEEecCCceecccc--ccccceeeee-ecCCCEEEEEEcCC
Q 003459 252 VFSWEPIRCHDAVD--VGWSRLSDLN-VHEGKLLGCSYNQS 289 (818)
Q Consensus 252 Vwd~~~~~~~~~~~--~~~~~v~~l~-~~~g~lLatg~~Dg 289 (818)
+|+++..+...... .+...+..+. .++++.|++++.+.
T Consensus 253 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 253 LMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 88887765533332 2222333333 47888888776653
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1e-21 Score=235.42 Aligned_cols=279 Identities=12% Similarity=0.087 Sum_probs=208.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC---CeEEEEEcCCCCEEEEEECC---------CeEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS---GIDSVSFDSSEVLVAAGAAS---------GTIKL 85 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~---~V~~l~fspdg~~Lasgs~D---------G~I~I 85 (818)
.+.+++|+|+ ++++++ +.||+|++||+.+++....+.+|.. .|.+++|+|||++|++++.+ +.|++
T Consensus 18 ~~~~~~~spd-g~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~ 95 (723)
T 1xfd_A 18 HDPEAKWISD-TEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (723)
T ss_dssp CCCCCCBSSS-SCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred cccccEEcCC-CcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEE
Confidence 4678999995 456665 7899999999999988888887765 49999999999999999774 78899
Q ss_pred EECCCCeEEEEEc---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCe----------------
Q 003459 86 WDLEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGV---------------- 146 (818)
Q Consensus 86 WDl~t~~~v~~l~---~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V---------------- 146 (818)
||+.+++. ..+. +|...+..++|+|+|++|++++. +.|++||+.+++.......+...+
T Consensus 96 ~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~ 173 (723)
T 1xfd_A 96 SKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILK 173 (723)
T ss_dssp EESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSS
T ss_pred EECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEecc
Confidence 99998876 3343 34445889999999999999986 799999999888776665544333
Q ss_pred --EEEEEcCCCCEEEEEECCC----------------------------------eEEEEECCCCeEEEEEecC------
Q 003459 147 --NAIRFTPDGRWVVSGGEDN----------------------------------TVKLWDLTAGKLLHDFKCH------ 184 (818)
Q Consensus 147 --~~l~fspdg~~L~sgs~Dg----------------------------------~I~IwDl~t~~~i~~~~~h------ 184 (818)
.+++|+|||++|++++.++ .|++||+.+++....+..+
T Consensus 174 ~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~ 253 (723)
T 1xfd_A 174 THIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMR 253 (723)
T ss_dssp SSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGS
T ss_pred CcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCc
Confidence 7899999999999987653 7999999988765566543
Q ss_pred CCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCeEEEEeCC-CCCCe----eEEEEeCCCCEEEEE--ECC-----
Q 003459 185 EGQIQCIDFHPHEFLLATGSA----DRTVKFWDLETFELIGSAGP-ETSGV----RCLTFNPDGRTLLCG--LHE----- 248 (818)
Q Consensus 185 ~~~I~sv~fspdg~~Lasgs~----Dg~I~IwDl~t~~~i~~~~~-~~~~I----~sl~fspdg~~Lasg--s~d----- 248 (818)
...+..++|+|||++|++... +..|++||+.+++....+.. +...+ ..++|+|||+.|+.. ..+
T Consensus 254 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 333 (723)
T 1xfd_A 254 EYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGK 333 (723)
T ss_dssp SEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSC
T ss_pred cceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcc
Confidence 567899999999998877653 35799999999887655432 23333 378999999977753 333
Q ss_pred CEEEEEec--CCce---ecccc-ccccceeee-eecCCCEEEEEEcC---CeEEEEEecCCC
Q 003459 249 SLKVFSWE--PIRC---HDAVD-VGWSRLSDL-NVHEGKLLGCSYNQ---SCVGVWVVDISR 300 (818)
Q Consensus 249 ~I~Vwd~~--~~~~---~~~~~-~~~~~v~~l-~~~~g~lLatg~~D---g~V~IWdvd~~~ 300 (818)
..+||.|+ .... ...+. ..+.....+ ..++|+.|+..+.+ +.+++|+++...
T Consensus 334 ~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 334 FYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp EEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred eeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 34566665 2222 33332 334433333 45899998766665 789999998653
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=9.8e-21 Score=226.65 Aligned_cols=278 Identities=12% Similarity=0.094 Sum_probs=207.5
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-----C
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-----A 91 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t-----~ 91 (818)
..|.+++|+|+ +.++++ .++.|++||+.+++... +..+...+.+++|+|||++|+++ .++.|++||+.+ +
T Consensus 82 ~~v~~~~~spd-~~~~~~--~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF--TQGGLVGFDMLARKVTY-LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp CCCEEEEETTT-TEEEEE--ETTEEEEEETTTTEEEE-EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred cCceeEEECCC-CeEEEE--ECCEEEEEECCCCceEE-ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence 57999999996 655544 35999999998876544 44567788999999999999985 689999999998 8
Q ss_pred eEEEEEcCCCCC--------------eEEEEEeCCCCEEEEEE---------------------------------CCCc
Q 003459 92 KIVRTLTGHRSN--------------CISVDFHPFGEFFASGS---------------------------------LDTN 124 (818)
Q Consensus 92 ~~v~~l~~h~~~--------------V~sv~fspdg~~Lasgs---------------------------------~Dg~ 124 (818)
+.......+... +.++.|+|||++|++++ .+..
T Consensus 157 ~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~ 236 (706)
T 2z3z_A 157 RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT 236 (706)
T ss_dssp CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence 766554444333 47899999999999987 4468
Q ss_pred EEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEe-c-CCC---CEEEEE
Q 003459 125 LKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGEDN-----TVKLWDLTAGKLLHDFK-C-HEG---QIQCID 192 (818)
Q Consensus 125 I~IwDl~~~~~i~~l~--~h~~~V~~l~fspdg~~L~sgs~Dg-----~I~IwDl~t~~~i~~~~-~-h~~---~I~sv~ 192 (818)
|++||+.+++...... .|...+.+++|+|||++|++++.++ .|++||+.+++....+. . +.. .+.++.
T Consensus 237 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 316 (706)
T 2z3z_A 237 VGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLT 316 (706)
T ss_dssp EEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCE
T ss_pred EEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCce
Confidence 9999999887655442 4667799999999999999988775 89999999983333332 2 222 246789
Q ss_pred EeC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeCCCCCCeeE-EEEeCCCCEEEEEECC-C---EEEEEecCCce-ecc
Q 003459 193 FHP--HEFLLATGSADRTVKFWDLE-TFELIGSAGPETSGVRC-LTFNPDGRTLLCGLHE-S---LKVFSWEPIRC-HDA 263 (818)
Q Consensus 193 fsp--dg~~Lasgs~Dg~I~IwDl~-t~~~i~~~~~~~~~I~s-l~fspdg~~Lasgs~d-~---I~Vwd~~~~~~-~~~ 263 (818)
|+| +|.+|+++..|+.+++|++. ++..+..+..+...+.. ++|+|||+.|+.++.+ + ..||.|+.... ...
T Consensus 317 ~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 396 (706)
T 2z3z_A 317 FLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKD 396 (706)
T ss_dssp ECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEE
T ss_pred eecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCcee
Confidence 999 99999999999999999876 67777777777777876 7999999988765443 2 57777654221 222
Q ss_pred ccccccceeeee-ecCCCEEEEEEcC----CeEEEEEecCCC
Q 003459 264 VDVGWSRLSDLN-VHEGKLLGCSYNQ----SCVGVWVVDISR 300 (818)
Q Consensus 264 ~~~~~~~v~~l~-~~~g~lLatg~~D----g~V~IWdvd~~~ 300 (818)
+.. ...+..+. .++|+.++..+.+ +.|++|++++++
T Consensus 397 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 397 LTP-ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SCC-SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ccC-CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 222 22233443 4789888766544 569999998876
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=8.7e-21 Score=228.21 Aligned_cols=277 Identities=7% Similarity=0.011 Sum_probs=209.0
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~ 95 (818)
.|.+++|+| ++++|++++. +.|++||+.++. ....+..|...+.+++|+|||++|++++ ++.|++||+.+++...
T Consensus 110 ~v~~~~~Sp-Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSP-DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECT-TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred CcceeEECC-CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 378999999 5666777775 999999998773 4456777888999999999999999987 5689999999988776
Q ss_pred EEcCCCCC----------------eEEEEEeCCCCEEEEEECCC---------------------------------cEE
Q 003459 96 TLTGHRSN----------------CISVDFHPFGEFFASGSLDT---------------------------------NLK 126 (818)
Q Consensus 96 ~l~~h~~~----------------V~sv~fspdg~~Lasgs~Dg---------------------------------~I~ 126 (818)
....+... +..+.|+|||++|++++.|+ .|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55544432 47799999999999987765 899
Q ss_pred EEECCC-CeEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCeEEEEEecCCC----CEEEEEEe
Q 003459 127 IWDIRK-KGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGE-----DNTVKLWDLTAGKLLHDFKCHEG----QIQCIDFH 194 (818)
Q Consensus 127 IwDl~~-~~~i~~l~--~h~~~V~~l~fspdg~~L~sgs~-----Dg~I~IwDl~t~~~i~~~~~h~~----~I~sv~fs 194 (818)
+||+.+ ++...... .|...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..+.|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999988 77655433 36778999999 99999997764 56799999999988777665443 45689999
Q ss_pred CCCCEEEEEeCCCeEEEEECC-CCeEEEEeCCCCCCeeEE-EEeCCCCEEEE-EECC---CEEEEEecC-Cceecccccc
Q 003459 195 PHEFLLATGSADRTVKFWDLE-TFELIGSAGPETSGVRCL-TFNPDGRTLLC-GLHE---SLKVFSWEP-IRCHDAVDVG 267 (818)
Q Consensus 195 pdg~~Lasgs~Dg~I~IwDl~-t~~~i~~~~~~~~~I~sl-~fspdg~~Las-gs~d---~I~Vwd~~~-~~~~~~~~~~ 267 (818)
|+|+++++++.||.++||.+. .++ ...+..+...+..+ .|+|||+.|+. +..+ .++||+++. +.....+...
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~~ 424 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSKA 424 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCCS
T ss_pred CCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecccC
Confidence 999999999999987777765 345 66777777788887 59999998764 4444 589999875 3333333322
Q ss_pred ccceeee-eecCCCEEEEEEcC----CeEEEEEecCCC
Q 003459 268 WSRLSDL-NVHEGKLLGCSYNQ----SCVGVWVVDISR 300 (818)
Q Consensus 268 ~~~v~~l-~~~~g~lLatg~~D----g~V~IWdvd~~~ 300 (818)
..+..+ ..++|+.|+....+ ..+.+|+.+.+.
T Consensus 425 -~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 425 -PGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp -CSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE
T ss_pred -CCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe
Confidence 222333 34788888766544 467777765543
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=7.3e-20 Score=196.83 Aligned_cols=242 Identities=15% Similarity=0.250 Sum_probs=179.9
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCC-CeEEEEECC--CCc--eEEEecCCCCCeEEEEEcCCCCEEEEEEC-CCeEEE
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGED-HKVNLWAIG--KPN--AILSLSGHTSGIDSVSFDSSEVLVAAGAA-SGTIKL 85 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~D-g~V~lWdl~--~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs~-DG~I~I 85 (818)
...|...+.+++|+| ++++|++++.+ +.|.+|++. +++ .+..+..+. .+.+++|+|++++|++++. ++.|.+
T Consensus 33 ~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 33 VVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSV 110 (343)
T ss_dssp EEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred eEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEE
Confidence 346778899999999 55556666665 999999997 444 344455444 7899999999998877765 889999
Q ss_pred EECC---CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCC-CeEEE----EEec-CCCCeEEEEEcCCC
Q 003459 86 WDLE---EAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRK-KGCIH----TYKG-HTRGVNAIRFTPDG 155 (818)
Q Consensus 86 WDl~---t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~-~~~i~----~l~~-h~~~V~~l~fspdg 155 (818)
||+. ..+.+..+..+ ..+.+++|+|+++++++++ .++.|++||+.+ ++... .+.. ....+.+++|+|+|
T Consensus 111 ~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 111 TRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp EEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred EECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence 9994 44555555543 4588999999999888887 899999999987 54432 2232 34578899999999
Q ss_pred CEEEEEE-CCCeEEEEECCC--CeE--EEEEec---C---CCCEEEEEEeCCCCEEEEE-eCCCeEEEEECC----CCeE
Q 003459 156 RWVVSGG-EDNTVKLWDLTA--GKL--LHDFKC---H---EGQIQCIDFHPHEFLLATG-SADRTVKFWDLE----TFEL 219 (818)
Q Consensus 156 ~~L~sgs-~Dg~I~IwDl~t--~~~--i~~~~~---h---~~~I~sv~fspdg~~Lasg-s~Dg~I~IwDl~----t~~~ 219 (818)
+++++++ .++.|.+||+.. ++. ...+.. . ...+..++|+|++.+|+++ ..++.|.+||+. ..+.
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 9877665 789999999953 432 333321 1 2357789999999877754 478999999998 3445
Q ss_pred EEEeCCCCCCeeEEEEeCCCCEEEEEEC--CCEEEEEecC
Q 003459 220 IGSAGPETSGVRCLTFNPDGRTLLCGLH--ESLKVFSWEP 257 (818)
Q Consensus 220 i~~~~~~~~~I~sl~fspdg~~Lasgs~--d~I~Vwd~~~ 257 (818)
+..+..+.. +.+++|+|+|++|+++.. +.+.+|+++.
T Consensus 270 ~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 270 EGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred eeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 555554444 889999999999988863 4699997764
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.4e-19 Score=195.91 Aligned_cols=230 Identities=12% Similarity=0.093 Sum_probs=192.4
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCC---------eEEEEEcCCCCEEEEEE--CCCeEE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSG---------IDSVSFDSSEVLVAAGA--ASGTIK 84 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~---------V~~l~fspdg~~Lasgs--~DG~I~ 84 (818)
...+.+++|+|++..+++++..++.|.+||..+++.+..+..+... +.+++|+|+++++++++ .++.|.
T Consensus 88 ~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~ 167 (353)
T 3vgz_A 88 DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIW 167 (353)
T ss_dssp SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEE
T ss_pred CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEE
Confidence 3457889999966667777777899999999999988888765432 78999999999887776 478999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec----CCCCeEEEEEcCCCCEEEE
Q 003459 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG----HTRGVNAIRFTPDGRWVVS 160 (818)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~----h~~~V~~l~fspdg~~L~s 160 (818)
+||+.+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+++.+..+.. +...+..++|+|+|+++++
T Consensus 168 ~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 247 (353)
T 3vgz_A 168 VVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFI 247 (353)
T ss_dssp EEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEE
T ss_pred EEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEE
Confidence 999999999998886666788999999999999999999999999999998887764 4556888999999998877
Q ss_pred EECC-CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCC
Q 003459 161 GGED-NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPD 238 (818)
Q Consensus 161 gs~D-g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspd 238 (818)
++.+ +.|.+||+.+++.+..+.... ...++|+|++.++++++ .++.|.+||+.+++.+..+... ..+.+++|+||
T Consensus 248 ~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~d 324 (353)
T 3vgz_A 248 TDSKAAEVLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSAD 324 (353)
T ss_dssp EESSSSEEEEEETTTCCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTT
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCC
Confidence 7655 899999999999888887543 25799999998666655 6899999999999988877654 46799999999
Q ss_pred CCEEEEEECC
Q 003459 239 GRTLLCGLHE 248 (818)
Q Consensus 239 g~~Lasgs~d 248 (818)
|++|+++..+
T Consensus 325 g~~l~v~~~~ 334 (353)
T 3vgz_A 325 GKTLYVSVKQ 334 (353)
T ss_dssp SCEEEEEEEC
T ss_pred CCEEEEEEcc
Confidence 9988766543
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=1.2e-19 Score=194.63 Aligned_cols=243 Identities=12% Similarity=0.079 Sum_probs=193.0
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-C----CCCeEEEEEcCCCCEEEEEE------------CC
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-H----TSGIDSVSFDSSEVLVAAGA------------AS 80 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~-h----~~~V~~l~fspdg~~Lasgs------------~D 80 (818)
.+.+++|+|++..+++++..++.|.+||+.+++.+..+.. + ...+.+++|+|++++|++++ .+
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence 5889999996666677777889999999999988877663 2 12577899999999998886 57
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEE
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVS 160 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~s 160 (818)
+.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++.|++||+.+++.+..+..+... ..+.|+|+|.+++.
T Consensus 115 ~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 115 TRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWN 190 (337)
T ss_dssp CEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCC
T ss_pred ceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEee
Confidence 9999999999998888774 4567889999999988888 689999999999988877654411 12378999887765
Q ss_pred EECCC------------------------eEEEEECCCCeEE-EEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 003459 161 GGEDN------------------------TVKLWDLTAGKLL-HDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (818)
Q Consensus 161 gs~Dg------------------------~I~IwDl~t~~~i-~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (818)
++.++ .|.+||+.+++.. ..+..+...+.+++|+|++.+|+++ ++.|++||+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 54332 4789999998764 2234466678899999999999988 7999999999
Q ss_pred CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceecccccc
Q 003459 216 TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG 267 (818)
Q Consensus 216 t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~ 267 (818)
+++.+..+... ..+.+++|+|||++|++++.+ .+.+||..+++....+..+
T Consensus 269 ~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 269 KNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp TTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred CCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 99988777543 457899999999988877544 6999999888776655444
No 145
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=4.6e-20 Score=231.54 Aligned_cols=282 Identities=13% Similarity=0.088 Sum_probs=225.2
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC-CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK-PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~-~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
...+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+...+|+|+|++|+++ .++.|++||
T Consensus 196 ~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d 271 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFN 271 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred eEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEec
Confidence 4556899999999999974 7788888899999998743 44555666565 46778999999998887 489999999
Q ss_pred CCCCeEEEEEcC-----------CCCCeEEEEEe-CCCCEEEEEECCCcEEEEECCCCeEEEEEecCCC-CeEEEEEcCC
Q 003459 88 LEEAKIVRTLTG-----------HRSNCISVDFH-PFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTR-GVNAIRFTPD 154 (818)
Q Consensus 88 l~t~~~v~~l~~-----------h~~~V~sv~fs-pdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~-~V~~l~fspd 154 (818)
+...+.. .+.+ |...+.+++|+ |+|++|++++ ++.|++|++..+... .+..|.. .+..++|+ |
T Consensus 272 ~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-d 347 (1045)
T 1k32_A 272 PDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-T 347 (1045)
T ss_dssp TTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-S
T ss_pred CCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-C
Confidence 9555443 5554 33468999999 9999999887 789999999877644 4666777 89999999 9
Q ss_pred CCEEEEEECCCeEE-EEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEE
Q 003459 155 GRWVVSGGEDNTVK-LWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCL 233 (818)
Q Consensus 155 g~~L~sgs~Dg~I~-IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl 233 (818)
|+.|++++.++.+. +||+..++... +..|...+..++|+|+|++|++++.++.|++||+.+++.......+...+.++
T Consensus 348 g~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~ 426 (1045)
T 1k32_A 348 KVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 426 (1045)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCE
T ss_pred CCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccce
Confidence 99999999988899 99998776544 44677889999999999999999999999999999999887777788889999
Q ss_pred EEeCCCCEEEEEEC-----------CCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCC
Q 003459 234 TFNPDGRTLLCGLH-----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 234 ~fspdg~~Lasgs~-----------d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
+|+|||++|++++. ..+.+||++.++.................++|+.|+.++.++...+|+....
T Consensus 427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~ 503 (1045)
T 1k32_A 427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 503 (1045)
T ss_dssp EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence 99999999987643 2589999887764333332222233334589999999999999888876533
No 146
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.85 E-value=2.5e-19 Score=193.40 Aligned_cols=277 Identities=12% Similarity=0.024 Sum_probs=196.2
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEc
Q 003459 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVLVAA-GAASGTIKLWDLEEAKIVRTLT 98 (818)
Q Consensus 21 ~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~-~~V~~l~fspdg~~Las-gs~DG~I~IWDl~t~~~v~~l~ 98 (818)
++++++ +++++++++.++.|.+||..+++.+..+..+. ..+..++|+|+++++++ +..++.|.+||+.+++.+..+.
T Consensus 4 g~~~~~-~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKA-GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCT-TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccC-CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356666 77889999999999999999999888877543 25789999999986654 4568999999999999887776
Q ss_pred CCC------CCeEEEEEeCCCCEEEEEECC------------CcEEEEECCCCe---EEEEEecCCCCeEEEEEcCCCCE
Q 003459 99 GHR------SNCISVDFHPFGEFFASGSLD------------TNLKIWDIRKKG---CIHTYKGHTRGVNAIRFTPDGRW 157 (818)
Q Consensus 99 ~h~------~~V~sv~fspdg~~Lasgs~D------------g~I~IwDl~~~~---~i~~l~~h~~~V~~l~fspdg~~ 157 (818)
.+. ..+..++|+|+|++|++++.+ +.|.+||+.+++ .+..+.. ...+.+++|+|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-
Confidence 332 237889999999999998865 899999998743 3344443 34688999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecCCC------------------------CEEEEEEeCCCCEEEEEe-CCCeEEEE
Q 003459 158 VVSGGEDNTVKLWDLTAGKLLHDFKCHEG------------------------QIQCIDFHPHEFLLATGS-ADRTVKFW 212 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~------------------------~I~sv~fspdg~~Lasgs-~Dg~I~Iw 212 (818)
+++++ +.|.+||+.+++.+..+..+.. ...++++++++....... ....+..+
T Consensus 161 l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 238 (349)
T 1jmx_B 161 LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 238 (349)
T ss_dssp EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence 66654 3499999999988877764320 234566665442110000 00112224
Q ss_pred ECCCCeEE-EEeCCCCCCeeEEEEeC-CCCEEEEEECCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCe
Q 003459 213 DLETFELI-GSAGPETSGVRCLTFNP-DGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSC 290 (818)
Q Consensus 213 Dl~t~~~i-~~~~~~~~~I~sl~fsp-dg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~ 290 (818)
|..+++.. ..+..+...+.+++|+| ||++++++ ++.+.+||+.+.+....+..+.........++|+.|++++.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 317 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 317 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSE
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCe
Confidence 44443321 11122456788999999 99999988 67899999998887766665544444444578888888888999
Q ss_pred EEEEEecCCCcee
Q 003459 291 VGVWVVDISRIEP 303 (818)
Q Consensus 291 V~IWdvd~~~~~~ 303 (818)
|.+||+++.+...
T Consensus 318 v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 318 LAVFNPDTLEKVK 330 (349)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEeccccceee
Confidence 9999998876543
No 147
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=1.2e-19 Score=227.67 Aligned_cols=275 Identities=9% Similarity=0.063 Sum_probs=216.7
Q ss_pred CCCCEEEEEEe-eCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC-CeEEEEEcCCCCEEEEEECCCeEE-EEECCCC
Q 003459 15 HSSTVNCLKIG-RKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS-GIDSVSFDSSEVLVAAGAASGTIK-LWDLEEA 91 (818)
Q Consensus 15 H~~~V~~lafs-p~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~-~V~~l~fspdg~~Lasgs~DG~I~-IWDl~t~ 91 (818)
|...|.+++|+ | +++.|++++ ++.|.+|++..+... .+..|.. .+.+++|+ +++.|++++.++.|. +||+.++
T Consensus 294 ~~~~v~~~~~S~p-dG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~ 369 (1045)
T 1k32_A 294 SIPSKFAEDFSPL-DGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG 369 (1045)
T ss_dssp ECGGGGEEEEEEC-GGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC
T ss_pred cccccceeeecCC-CCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC
Confidence 45579999999 9 455566666 789999999876644 4667777 89999999 999999999888899 9999887
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC------
Q 003459 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN------ 165 (818)
Q Consensus 92 ~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg------ 165 (818)
+... +.+|...+..++|+|+|++|++++.++.|++||+.+++....+..|...+.+++|+|||++|++++.++
T Consensus 370 ~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~ 448 (1045)
T 1k32_A 370 KAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 448 (1045)
T ss_dssp CEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred CceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccC
Confidence 7654 447888999999999999999999999999999999998888878999999999999999999887654
Q ss_pred ----eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE----------------------
Q 003459 166 ----TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL---------------------- 219 (818)
Q Consensus 166 ----~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~---------------------- 219 (818)
.|++||+.+++ +..+..|...+..++|+|+|.+|++++.++...+|+......
T Consensus 449 ~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 449 YVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp CCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred CCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 89999999887 666777888899999999999999999887777776543221
Q ss_pred ---------------------EEEeCCCCCCeeEEEEeCCCCEEEE------------EECCC--EEEEEecCCceeccc
Q 003459 220 ---------------------IGSAGPETSGVRCLTFNPDGRTLLC------------GLHES--LKVFSWEPIRCHDAV 264 (818)
Q Consensus 220 ---------------------i~~~~~~~~~I~sl~fspdg~~Las------------gs~d~--I~Vwd~~~~~~~~~~ 264 (818)
+..+..+.+.+..+.|+|||.++++ +.++. +.+||+.+++.....
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 607 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK 607 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence 1122335567889999999987775 12233 555555555433222
Q ss_pred cccccceeeee-ecCCCEEEEEEcCCeEEEEEecCCC
Q 003459 265 DVGWSRLSDLN-VHEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 265 ~~~~~~v~~l~-~~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
..+..+. .++|+.|+++..+ .|++|++..++
T Consensus 608 ----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 608 ----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp ----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred ----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 2333333 5899999988776 89999998887
No 148
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=1.1e-19 Score=206.32 Aligned_cols=238 Identities=13% Similarity=0.173 Sum_probs=177.8
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----------ceEEE-----ecCCCCCeEEEEEcCCCCEEE----
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----------NAILS-----LSGHTSGIDSVSFDSSEVLVA---- 75 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~----------~~i~~-----l~~h~~~V~~l~fspdg~~La---- 75 (818)
+...++++++++ .+.++++++.|+ +++|+.... ..+.. ...+...|.+++|++++++|+
T Consensus 35 ~~~~~n~lavs~-~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~ 112 (434)
T 2oit_A 35 PKERSSLLAVSN-KYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMM 112 (434)
T ss_dssp CCSCCBCEEEET-TTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEE
T ss_pred CCCCccEEEEec-CCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEe
Confidence 344689999999 556788888887 888875210 11111 113567899999999999999
Q ss_pred EEECCCeEEEEECCCC--------e---EEEEEcCCCCCeEEEEEeCC-CCEEEEEECCCcEEEEECCCCeEEEEEecCC
Q 003459 76 AGAASGTIKLWDLEEA--------K---IVRTLTGHRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGCIHTYKGHT 143 (818)
Q Consensus 76 sgs~DG~I~IWDl~t~--------~---~v~~l~~h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~ 143 (818)
+|+.|+.|++||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||.|++||++++..+....+|.
T Consensus 113 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~ 192 (434)
T 2oit_A 113 SSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPST 192 (434)
T ss_dssp ETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGG
T ss_pred ccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCC
Confidence 7888999999998654 2 24566789999999999998 7899999999999999999998777777889
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-------CCEEEEEEeCCCCEEEEE-eCCC------eE
Q 003459 144 RGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-------GQIQCIDFHPHEFLLATG-SADR------TV 209 (818)
Q Consensus 144 ~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-------~~I~sv~fspdg~~Lasg-s~Dg------~I 209 (818)
..|.+++|+|+|++|++|+.||.|++||++ ++....+..|. ..|.++.|++++.++++. ..|| .+
T Consensus 193 ~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v 271 (434)
T 2oit_A 193 VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDV 271 (434)
T ss_dssp GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEE
T ss_pred CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCce
Confidence 999999999999999999999999999998 66666665432 379999999998777553 3443 38
Q ss_pred EEEECCCCe-----EEEEeC-------CCCCCeeEEEEeCCCCEEEEEECC--CEEEEEe
Q 003459 210 KFWDLETFE-----LIGSAG-------PETSGVRCLTFNPDGRTLLCGLHE--SLKVFSW 255 (818)
Q Consensus 210 ~IwDl~t~~-----~i~~~~-------~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~ 255 (818)
++|++.+.+ ....+. ....+...+.+-++.+++++++.. .+.|+..
T Consensus 272 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 272 VMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp EEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred EEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence 999998642 122221 112233344455888888877654 2555554
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=9e-20 Score=213.73 Aligned_cols=269 Identities=13% Similarity=0.092 Sum_probs=195.0
Q ss_pred CCCEEEEEEeeCCCcEEEEEeC-CCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCEEEEEEC---CCeEEEEECCC
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGE-DHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEE 90 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~-Dg~V~lWdl~~~~~i~~l~~h~-~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~t 90 (818)
..+|++++|+|| ++.||+++. ||+++||++..++. ..+..|. ..+..++|+|| +++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence 457999999995 555666655 99999999865554 4555555 68999999999 77777765 45455554432
Q ss_pred ---CeEEEEEcCCCCCeEEEEEeCCCCE-EEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC--
Q 003459 91 ---AKIVRTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED-- 164 (818)
Q Consensus 91 ---~~~v~~l~~h~~~V~sv~fspdg~~-Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D-- 164 (818)
+... .+..+ ..+...+|+|+|+. +++.+.++.+.+||+.+++.......+. .+++|+|||++|++++.+
T Consensus 98 ~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 98 SRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp TSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred cCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence 3322 44322 23446788888863 3444455556699999887665554333 789999999999988877
Q ss_pred --CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCC--eEEEEECCCCeEEEEeCCCCCCeeEEE------
Q 003459 165 --NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADR--TVKFWDLETFELIGSAGPETSGVRCLT------ 234 (818)
Q Consensus 165 --g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg--~I~IwDl~t~~~i~~~~~~~~~I~sl~------ 234 (818)
+.|++||+.+++.. .+..|.+.+..++|+|||++|+++..++ .|++||+.+++.. .+..+...+..+.
T Consensus 173 ~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE
T ss_pred CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc
Confidence 78999999988765 5667888899999999999999888888 8999999999887 6777766677777
Q ss_pred --EeCCCCEEEEEECC-CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCe-EEEEEecCC
Q 003459 235 --FNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSC-VGVWVVDIS 299 (818)
Q Consensus 235 --fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~-V~IWdvd~~ 299 (818)
|+|||.+++++..+ .+++|++ +++.... ...+..+.+.+++++++++.+.. -.+|.++..
T Consensus 251 ~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~---~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 251 LGYLPDGRLAVVARREGRSAVFID--GERVEAP---QGNHGRVVLWRGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEECTTSCEEEEEEETTEEEEEET--TEEECCC---SSEEEEEEEETTEEEEEEEETTEEEEEEEETTC
T ss_pred eeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC---CCceEEEEecCCEEEEEEcCCCCCCeEEEEcCC
Confidence 99999887777655 5999998 5544322 23344555558888888777654 445554443
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.9e-18 Score=188.09 Aligned_cols=266 Identities=12% Similarity=0.152 Sum_probs=181.7
Q ss_pred CCCeEEEEECC--CCceEE-EecCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCe--EEEEEcCCCCCeEEEE
Q 003459 37 EDHKVNLWAIG--KPNAIL-SLSGHTSGIDSVSFDSSEVLVAAGAA---SGTIKLWDLEEAK--IVRTLTGHRSNCISVD 108 (818)
Q Consensus 37 ~Dg~V~lWdl~--~~~~i~-~l~~h~~~V~~l~fspdg~~Lasgs~---DG~I~IWDl~t~~--~v~~l~~h~~~V~sv~ 108 (818)
.++.|.+|+++ +++... ....+...+..++|+|+++ |++++. ++.|.+||+.+++ .+..+..+...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 34567777664 454432 2334556778899999999 555544 6899999998776 4444455677888999
Q ss_pred EeCCCCEEEEEE-CCCcEEEEECCC-C--eEEEEEecC---------CCCeEEEEEcCCCCEEEEEECCCeEEEEECC-C
Q 003459 109 FHPFGEFFASGS-LDTNLKIWDIRK-K--GCIHTYKGH---------TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT-A 174 (818)
Q Consensus 109 fspdg~~Lasgs-~Dg~I~IwDl~~-~--~~i~~l~~h---------~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~-t 174 (818)
|+|+|++|++++ .++.|.+||+.. + ..+..+... ...+.+++|+|+|+++++...++.|.+||+. +
T Consensus 93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~ 172 (347)
T 3hfq_A 93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDA 172 (347)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTT
T ss_pred ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCC
Confidence 999999988888 678999999963 2 233333321 2348899999999966666668899999998 5
Q ss_pred CeEEE--EEecC-CCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCC--CeE--EEEeCCCC------CCeeEEEEeCCCC
Q 003459 175 GKLLH--DFKCH-EGQIQCIDFHPHEFLLAT-GSADRTVKFWDLET--FEL--IGSAGPET------SGVRCLTFNPDGR 240 (818)
Q Consensus 175 ~~~i~--~~~~h-~~~I~sv~fspdg~~Las-gs~Dg~I~IwDl~t--~~~--i~~~~~~~------~~I~sl~fspdg~ 240 (818)
++... .+..+ ...+..++|+|+|++|++ +..++.|.+|++.. ++. +..+.... ..+..++|+|||+
T Consensus 173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH 252 (347)
T ss_dssp SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence 54332 22322 336788999999996665 55688999999874 543 22222221 3488999999999
Q ss_pred EEEEE-E-CCCEEEEEecCC---ceeccccccccceeeee-ecCCCEEEEEEcC-CeEEEEEec--CCCcee
Q 003459 241 TLLCG-L-HESLKVFSWEPI---RCHDAVDVGWSRLSDLN-VHEGKLLGCSYNQ-SCVGVWVVD--ISRIEP 303 (818)
Q Consensus 241 ~Lasg-s-~d~I~Vwd~~~~---~~~~~~~~~~~~v~~l~-~~~g~lLatg~~D-g~V~IWdvd--~~~~~~ 303 (818)
+|+++ . ++.+.+|+++.. +....+..+......+. .++|++|+++..+ +.|.+|+++ ++++..
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 88654 3 346999999733 33333333223233444 4789988887764 899999665 455544
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.9e-18 Score=188.02 Aligned_cols=245 Identities=13% Similarity=0.207 Sum_probs=178.0
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeC--CCeEEEEECCCCc--eEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGE--DHKVNLWAIGKPN--AILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLW 86 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~--Dg~V~lWdl~~~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IW 86 (818)
...+...+..++|+|+ +++++++.. ++.|.+|++.+++ .+..+..+...+..++|+|++++|++++ .++.|.+|
T Consensus 35 ~~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 35 LLAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeeccCCcceEEEccC-CeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 3456677888999994 555555442 6899999997665 3444455777889999999999988888 67999999
Q ss_pred ECC-CC--eEEEEEcC---------CCCCeEEEEEeCCCCEEEEEECCCcEEEEECC-CCeEE--EEEecC-CCCeEEEE
Q 003459 87 DLE-EA--KIVRTLTG---------HRSNCISVDFHPFGEFFASGSLDTNLKIWDIR-KKGCI--HTYKGH-TRGVNAIR 150 (818)
Q Consensus 87 Dl~-t~--~~v~~l~~---------h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~-~~~~i--~~l~~h-~~~V~~l~ 150 (818)
++. ++ ..+..+.. +...+.+++|+|+|+++++...++.|++||+. +++.. ..+..+ ...+..++
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~ 193 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLV 193 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEE
Confidence 996 33 33333332 12348899999999966666668899999998 45432 222322 33678899
Q ss_pred EcCCCCEEEEE-ECCCeEEEEECCC--CeE--EEEEecCC------CCEEEEEEeCCCCEE-EEEeCCCeEEEEECC---
Q 003459 151 FTPDGRWVVSG-GEDNTVKLWDLTA--GKL--LHDFKCHE------GQIQCIDFHPHEFLL-ATGSADRTVKFWDLE--- 215 (818)
Q Consensus 151 fspdg~~L~sg-s~Dg~I~IwDl~t--~~~--i~~~~~h~------~~I~sv~fspdg~~L-asgs~Dg~I~IwDl~--- 215 (818)
|+|||++|+++ ..++.|.+|++.. ++. +..+.... ..+..++|+|+|++| ++...++.|.+||+.
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 99999977665 5678999999874 543 23333222 348899999999977 555668999999997
Q ss_pred CCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecC
Q 003459 216 TFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEP 257 (818)
Q Consensus 216 t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~ 257 (818)
..+.+..+..+...+.+++|+|||++|+++..+ .+.+|+++.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 274 HLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp CEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 335566666666678999999999999887654 599997764
No 152
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=3.1e-19 Score=213.66 Aligned_cols=276 Identities=17% Similarity=0.133 Sum_probs=193.0
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE-EEecCCC-----------------CCeEEEEEcCCCCEEEEEECC
Q 003459 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI-LSLSGHT-----------------SGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i-~~l~~h~-----------------~~V~~l~fspdg~~Lasgs~D 80 (818)
+..+.|. ++ .+++++.|+ | +||+.+++.+ ..+..|. ..|.+++|+|+ ..++.+. +
T Consensus 28 ~~~~~w~--g~-~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~ 100 (706)
T 2z3z_A 28 VVGLQWM--GD-NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-Q 100 (706)
T ss_dssp CTTCEEE--TT-EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-T
T ss_pred CCCCcCc--CC-eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-C
Confidence 4557787 44 456666777 8 9999888773 3333332 56999999999 6666654 6
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-----CeEEEEEecCCCC----------
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-----KGCIHTYKGHTRG---------- 145 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-----~~~i~~l~~h~~~---------- 145 (818)
+.|++||+.+++..... .+...+.+++|+|+|++|+++ .++.|++||+.+ ++.......+...
T Consensus 101 ~~i~~~d~~~~~~~~l~-~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~e 178 (706)
T 2z3z_A 101 GGLVGFDMLARKVTYLF-DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQR 178 (706)
T ss_dssp TEEEEEETTTTEEEEEE-CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGG
T ss_pred CEEEEEECCCCceEEcc-CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhh
Confidence 99999999988765544 466778899999999999985 679999999998 7766544433332
Q ss_pred ----eEEEEEcCCCCEEEEEE---------------------------------CCCeEEEEECCCCeEEEEEe--cCCC
Q 003459 146 ----VNAIRFTPDGRWVVSGG---------------------------------EDNTVKLWDLTAGKLLHDFK--CHEG 186 (818)
Q Consensus 146 ----V~~l~fspdg~~L~sgs---------------------------------~Dg~I~IwDl~t~~~i~~~~--~h~~ 186 (818)
+.+++|+|||++|++++ .+..|++||+.+++...... .|..
T Consensus 179 e~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 258 (706)
T 2z3z_A 179 EFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEK 258 (706)
T ss_dssp CTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTC
T ss_pred hcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCce
Confidence 47899999999999987 44679999999987655442 3567
Q ss_pred CEEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCeEEEEeC--CCC---CCeeEEEEeC--CCCEEEEEECC-CEEEE
Q 003459 187 QIQCIDFHPHEFLLATGSADR-----TVKFWDLETFELIGSAG--PET---SGVRCLTFNP--DGRTLLCGLHE-SLKVF 253 (818)
Q Consensus 187 ~I~sv~fspdg~~Lasgs~Dg-----~I~IwDl~t~~~i~~~~--~~~---~~I~sl~fsp--dg~~Lasgs~d-~I~Vw 253 (818)
.+.+++|+|+|++|++++.++ .|++||+.+++....+. .+. ..+.++.|+| ||++++++..+ .++||
T Consensus 259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~ 338 (706)
T 2z3z_A 259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLY 338 (706)
T ss_dssp EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEE
T ss_pred eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEE
Confidence 799999999999999987775 89999999983332221 122 1346789999 99998888655 58999
Q ss_pred Eec-CCceeccccccccceee-e-eecCCCEEEEEEcC-C----eEEEEEecCCCcee
Q 003459 254 SWE-PIRCHDAVDVGWSRLSD-L-NVHEGKLLGCSYNQ-S----CVGVWVVDISRIEP 303 (818)
Q Consensus 254 d~~-~~~~~~~~~~~~~~v~~-l-~~~~g~lLatg~~D-g----~V~IWdvd~~~~~~ 303 (818)
.++ .+.....+..+...+.. + ..++|+.|+.++.+ + .|..|+++++....
T Consensus 339 ~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 396 (706)
T 2z3z_A 339 LYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTKD 396 (706)
T ss_dssp EEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCEE
T ss_pred EEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCcee
Confidence 887 44444444333222332 3 34788877655554 4 55566666655443
No 153
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=5.1e-19 Score=211.98 Aligned_cols=276 Identities=9% Similarity=0.030 Sum_probs=195.3
Q ss_pred EEEEecCCC---CEEEEEEeeCCCcEEEEEeCC---------CeEEEEECCCCceEEEec---CCCCCeEEEEEcCCCCE
Q 003459 9 LQEFVAHSS---TVNCLKIGRKSSRVLVTGGED---------HKVNLWAIGKPNAILSLS---GHTSGIDSVSFDSSEVL 73 (818)
Q Consensus 9 l~~~~~H~~---~V~~lafsp~~~~lLatgs~D---------g~V~lWdl~~~~~i~~l~---~h~~~V~~l~fspdg~~ 73 (818)
...+.+|.. .|.+++|+| ++++|++++.+ +.|.+||+.+++. ..+. +|...+..++|+|||++
T Consensus 50 ~~~~~~~~~~~~~v~~~~~Sp-Dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~ 127 (723)
T 1xfd_A 50 TVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQ 127 (723)
T ss_dssp EEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTC
T ss_pred EEEeccccccccccceEEECC-CCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCE
Confidence 344555654 499999999 56677777664 7889999988876 3333 34556899999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEcCCCCCe------------------EEEEEeCCCCEEEEEECCC------------
Q 003459 74 VAAGAASGTIKLWDLEEAKIVRTLTGHRSNC------------------ISVDFHPFGEFFASGSLDT------------ 123 (818)
Q Consensus 74 Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V------------------~sv~fspdg~~Lasgs~Dg------------ 123 (818)
|++++. +.|++||+.+++.......+...+ .+++|+|||++|++++.++
T Consensus 128 la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~ 206 (723)
T 1xfd_A 128 LIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT 206 (723)
T ss_dssp EEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred EEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC
Confidence 999875 899999999988777666544333 7899999999999987553
Q ss_pred ----------------------cEEEEECCCCeEEEEEecC------CCCeEEEEEcCCCCEEEEEECC----CeEEEEE
Q 003459 124 ----------------------NLKIWDIRKKGCIHTYKGH------TRGVNAIRFTPDGRWVVSGGED----NTVKLWD 171 (818)
Q Consensus 124 ----------------------~I~IwDl~~~~~i~~l~~h------~~~V~~l~fspdg~~L~sgs~D----g~I~IwD 171 (818)
.|++||+.+++....+..+ ...+..++|+|||++|++.... ..|++||
T Consensus 207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 286 (723)
T 1xfd_A 207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD 286 (723)
T ss_dssp SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence 7999999988765666654 5678999999999988776543 5799999
Q ss_pred CCCCeEEEEEec-CCCCE----EEEEEeCCCCEEEE--EeCCC------eEEEEE-CCCCe--EEEEeCCCCCCeeE-EE
Q 003459 172 LTAGKLLHDFKC-HEGQI----QCIDFHPHEFLLAT--GSADR------TVKFWD-LETFE--LIGSAGPETSGVRC-LT 234 (818)
Q Consensus 172 l~t~~~i~~~~~-h~~~I----~sv~fspdg~~Las--gs~Dg------~I~IwD-l~t~~--~i~~~~~~~~~I~s-l~ 234 (818)
+.+++....+.. +...+ ..+.|+|+|+.|+. +..++ .|++|| ...++ ....+......+.. ++
T Consensus 287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~ 366 (723)
T 1xfd_A 287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILA 366 (723)
T ss_dssp TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEE
T ss_pred CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeE
Confidence 999987766543 33433 37899999987665 45667 577777 34444 13444433444554 69
Q ss_pred EeCCCCEEEEEEC----CCEEEEEecCCc--eeccccc---cccceeeee-ecCCCEEEEEEc
Q 003459 235 FNPDGRTLLCGLH----ESLKVFSWEPIR--CHDAVDV---GWSRLSDLN-VHEGKLLGCSYN 287 (818)
Q Consensus 235 fspdg~~Lasgs~----d~I~Vwd~~~~~--~~~~~~~---~~~~v~~l~-~~~g~lLatg~~ 287 (818)
|+|||+.|+..+. +.++||+++... ....+.. +...+..+. .++|+.|+....
T Consensus 367 ~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 367 YDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp EETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred EcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 9999999976543 358999987543 2222221 122233333 478887776543
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=1.3e-17 Score=182.72 Aligned_cols=239 Identities=13% Similarity=0.201 Sum_probs=172.2
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCC----CeEEEEECCC--Cc--eEEEecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGED----HKVNLWAIGK--PN--AILSLSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKL 85 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~D----g~V~lWdl~~--~~--~i~~l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~I 85 (818)
|...+..++|+| ++++|++++.+ +.|.+|++.. ++ .+.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~sp-dg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSA-DGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECT-TSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECC-CCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 677788899999 55667777765 8999998855 33 33344445667788888 788777776 5789999
Q ss_pred EECCCCeEEEE------EcC--------CCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECCCCe-------E------EE
Q 003459 86 WDLEEAKIVRT------LTG--------HRSNCISVDFHPFGEFFASGSL-DTNLKIWDIRKKG-------C------IH 137 (818)
Q Consensus 86 WDl~t~~~v~~------l~~--------h~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~~~~-------~------i~ 137 (818)
|++.....+.. ..+ +...+.+++|+|+|+++++++. ++.|++|++.... . ..
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~ 204 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA 204 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence 99975432211 111 1234578999999997766654 7899999887543 1 11
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeE--EEEEec---CCCCEEEEEEeCCCCEEEEEeCC--CeE
Q 003459 138 TYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKL--LHDFKC---HEGQIQCIDFHPHEFLLATGSAD--RTV 209 (818)
Q Consensus 138 ~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~IwDl~t~~~--i~~~~~---h~~~I~sv~fspdg~~Lasgs~D--g~I 209 (818)
....+......++|+|||+++++++ .++.|.+||+.+++. +..+.. +......++|+|+|++|+++..+ +.|
T Consensus 205 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i 284 (361)
T 3scy_A 205 FKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGV 284 (361)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEE
T ss_pred eecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEE
Confidence 1223455688999999999888887 589999999987754 333322 23457899999999988777654 899
Q ss_pred EEEECC--CCe--EEEEeCCCCCCeeEEEEeCCCCEEEEEEC--CCEEEEEecC
Q 003459 210 KFWDLE--TFE--LIGSAGPETSGVRCLTFNPDGRTLLCGLH--ESLKVFSWEP 257 (818)
Q Consensus 210 ~IwDl~--t~~--~i~~~~~~~~~I~sl~fspdg~~Lasgs~--d~I~Vwd~~~ 257 (818)
.+|++. +++ .+..+.. ...+.+++|+|||++|+++.. +.+.+|.++.
T Consensus 285 ~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 285 AIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred EEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 999995 444 4444444 556889999999999998873 3599988874
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=1.6e-17 Score=181.99 Aligned_cols=269 Identities=12% Similarity=0.201 Sum_probs=183.9
Q ss_pred CcEEEEEe----CCCeEEEEEC--CCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCC--Ce--EE
Q 003459 29 SRVLVTGG----EDHKVNLWAI--GKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS----GTIKLWDLEE--AK--IV 94 (818)
Q Consensus 29 ~~lLatgs----~Dg~V~lWdl--~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D----G~I~IWDl~t--~~--~v 94 (818)
..+++.|+ .++.|++|.+ .+++.......+...+..++|+|++++|++++.+ +.|.+|++.. ++ .+
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34566664 4568999976 4454333222267778889999999999999886 7999998865 44 33
Q ss_pred EEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCCeEEEE------Eec--------CCCCeEEEEEcCCCCEEE
Q 003459 95 RTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIHT------YKG--------HTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 95 ~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~~~i~~------l~~--------h~~~V~~l~fspdg~~L~ 159 (818)
.....+......+++ ++++|++++ .++.|.+|++.....+.. ..+ +...+.+++|+|+|++|+
T Consensus 93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 444445566778888 788877776 578999999975432211 111 123458899999999777
Q ss_pred EEEC-CCeEEEEECCCCe-------EE-----EEE-ecCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeE--EEE
Q 003459 160 SGGE-DNTVKLWDLTAGK-------LL-----HDF-KCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFEL--IGS 222 (818)
Q Consensus 160 sgs~-Dg~I~IwDl~t~~-------~i-----~~~-~~h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t~~~--i~~ 222 (818)
+++. ++.|.+|++.... .. ..+ ..+......++|+|+|++|++++ .++.|.+||+.+++. +..
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 6664 7899999887533 11 112 22445678999999999887777 689999999987754 222
Q ss_pred e---CCCCCCeeEEEEeCCCCEEEEEEC---CCEEEEEecC--Cc--eeccccccccceeeeeecCCCEEEEEE-cCCeE
Q 003459 223 A---GPETSGVRCLTFNPDGRTLLCGLH---ESLKVFSWEP--IR--CHDAVDVGWSRLSDLNVHEGKLLGCSY-NQSCV 291 (818)
Q Consensus 223 ~---~~~~~~I~sl~fspdg~~Lasgs~---d~I~Vwd~~~--~~--~~~~~~~~~~~v~~l~~~~g~lLatg~-~Dg~V 291 (818)
+ ..+......++|+|||++|+++.. +.+.+|+++. ++ ....+..+..+......++|++|+++. .++.|
T Consensus 251 ~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v 330 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVI 330 (361)
T ss_dssp EESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEE
T ss_pred EecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCE
Confidence 2 223345789999999999977654 3599999973 33 222333322222233348899888877 67999
Q ss_pred EEEEecCC
Q 003459 292 GVWVVDIS 299 (818)
Q Consensus 292 ~IWdvd~~ 299 (818)
.+|.++..
T Consensus 331 ~v~~~d~~ 338 (361)
T 3scy_A 331 QIFERDQA 338 (361)
T ss_dssp EEEEECTT
T ss_pred EEEEEECC
Confidence 99877743
No 156
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=6.1e-20 Score=220.37 Aligned_cols=273 Identities=13% Similarity=0.144 Sum_probs=195.4
Q ss_pred EEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCC---CeEEEEEcCCCCEEEEEEC---------CCeEEEEEC
Q 003459 21 CLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS---GIDSVSFDSSEVLVAAGAA---------SGTIKLWDL 88 (818)
Q Consensus 21 ~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~---~V~~l~fspdg~~Lasgs~---------DG~I~IWDl 88 (818)
+++|+|++ +++++ +.|+.|++||+.+++....+.+|.. .+.+++|+|||++|++++. ++.|++||+
T Consensus 20 ~~~~s~dg-~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQ-EYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSS-EEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCC-eEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 78999955 65554 4699999999999988777765543 4899999999999998876 789999999
Q ss_pred CCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE-ecCCCCe-----------------EEEE
Q 003459 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGV-----------------NAIR 150 (818)
Q Consensus 89 ~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l-~~h~~~V-----------------~~l~ 150 (818)
.+++.+.... ....+..++|+|||++|+++. ++.|++||+.+++..... .++...| .+++
T Consensus 98 ~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~ 175 (719)
T 1z68_A 98 SNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW 175 (719)
T ss_dssp TTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred CCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence 9987631111 235688899999999999986 789999999888765432 2222222 4899
Q ss_pred EcCCCCEEEEEECCC----------------------------------eEEEEECCCCeEE--EE------EecCCCCE
Q 003459 151 FTPDGRWVVSGGEDN----------------------------------TVKLWDLTAGKLL--HD------FKCHEGQI 188 (818)
Q Consensus 151 fspdg~~L~sgs~Dg----------------------------------~I~IwDl~t~~~i--~~------~~~h~~~I 188 (818)
|+|||++|++++.|. .|++||+.+++.. .. +..|...+
T Consensus 176 wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (719)
T 1z68_A 176 WSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYF 255 (719)
T ss_dssp ECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEE
T ss_pred ECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceE
Confidence 999999999988652 7889999987642 11 23477789
Q ss_pred EEEEEeCCCCEEEEEeCC----CeEEEEE----CCCCeEEEEe----CCCCCCee-----EEEEeCCCCEEEE--EECC-
Q 003459 189 QCIDFHPHEFLLATGSAD----RTVKFWD----LETFELIGSA----GPETSGVR-----CLTFNPDGRTLLC--GLHE- 248 (818)
Q Consensus 189 ~sv~fspdg~~Lasgs~D----g~I~IwD----l~t~~~i~~~----~~~~~~I~-----sl~fspdg~~Las--gs~d- 248 (818)
..++|+||+.++++.... ..|++|| +.+++....+ ..+...+. .+.|+|||+.|+. +..+
T Consensus 256 ~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g 335 (719)
T 1z68_A 256 SWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDG 335 (719)
T ss_dssp EEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTS
T ss_pred EEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCC
Confidence 999999998877775432 2488999 8877765544 35666666 8899999996654 3222
Q ss_pred CEEEE--EecCCceeccccccccceeeeeecCCCEEEEEEcC-----CeEEEEEecC
Q 003459 249 SLKVF--SWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQ-----SCVGVWVVDI 298 (818)
Q Consensus 249 ~I~Vw--d~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~D-----g~V~IWdvd~ 298 (818)
..+|| +.+..+........|.......+ +++.|+..+.+ +.+++|.++.
T Consensus 336 ~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 336 YKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp CEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred ceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 34455 44444433333334443333445 77777766655 8899999886
No 157
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.81 E-value=8e-19 Score=199.27 Aligned_cols=210 Identities=13% Similarity=0.075 Sum_probs=165.4
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------eEE-----EEEcCCCC
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA-----------KIV-----RTLTGHRS 102 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~-----------~~v-----~~l~~h~~ 102 (818)
+.+++|+... . .+...+..+++++++.++++++.+| +++|+.... ... ..+ .+..
T Consensus 23 ~~vri~~~~~-~------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPE-E------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKF 93 (434)
T ss_dssp CEEECSCCCS-S------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSS
T ss_pred eeEEecCCcc-c------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCC
Confidence 4688876421 1 1344688999999999999999888 889875311 111 112 2566
Q ss_pred CeEEEEEeCCCCEEE----EEECCCcEEEEECCCC--------e---EEEEEecCCCCeEEEEEcCC-CCEEEEEECCCe
Q 003459 103 NCISVDFHPFGEFFA----SGSLDTNLKIWDIRKK--------G---CIHTYKGHTRGVNAIRFTPD-GRWVVSGGEDNT 166 (818)
Q Consensus 103 ~V~sv~fspdg~~La----sgs~Dg~I~IwDl~~~--------~---~i~~l~~h~~~V~~l~fspd-g~~L~sgs~Dg~ 166 (818)
.|.+++|+|+|++|+ +|+.|+.|++||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||.
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 799999999999999 7888999999998654 2 24556679999999999997 899999999999
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC-------CCCeeEEEEeCCC
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-------TSGVRCLTFNPDG 239 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~-------~~~I~sl~fspdg 239 (818)
|++||++++..+.....|...|++++|+|+|.+|++|+.||.|++||++ ++....+..+ ...+.++.|++++
T Consensus 174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence 9999999998777777788999999999999999999999999999998 5555554333 2378999999999
Q ss_pred CEEEEEE-CC-------CEEEEEecCC
Q 003459 240 RTLLCGL-HE-------SLKVFSWEPI 258 (818)
Q Consensus 240 ~~Lasgs-~d-------~I~Vwd~~~~ 258 (818)
.++++.. .+ .+++|++...
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred eEEEEEccCCCccCCCCceEEEEeccC
Confidence 8886543 21 2889998754
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=2.9e-18 Score=188.94 Aligned_cols=292 Identities=12% Similarity=-0.010 Sum_probs=201.3
Q ss_pred ceeEEEEecCCCCEEE-----EEEeeCCCcEEEEEeC-CC--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE
Q 003459 6 AYKLQEFVAHSSTVNC-----LKIGRKSSRVLVTGGE-DH--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG 77 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~-----lafsp~~~~lLatgs~-Dg--~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg 77 (818)
...+..+..|...... .+|+|++ +.|+.++. +| .|.+||+.+++......++...+..+.|+|+++.|+.+
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDG-SKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTS-CEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred CcceEEecCCcccccchhhcCccCCCCC-CEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence 3456677778777766 8899955 45555555 67 48888998888877777776666678899999999999
Q ss_pred ECCCeEEEEECCCCeEEEEEcCCCCCeEEEE--EeCCCCEEEEEE----------------------CCCcEEEEECCCC
Q 003459 78 AASGTIKLWDLEEAKIVRTLTGHRSNCISVD--FHPFGEFFASGS----------------------LDTNLKIWDIRKK 133 (818)
Q Consensus 78 s~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~--fspdg~~Lasgs----------------------~Dg~I~IwDl~~~ 133 (818)
+.++.|++||+.+++....+..+...+.... +++++.+++... .++.|++||+.++
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g 178 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG 178 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC
T ss_pred eCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC
Confidence 9999999999999988777776665554444 489999887532 3468999999988
Q ss_pred eEEEEEecCCCCeEEEEEcC-CCCEEEEEECC------CeEEEEECCCCeEEEEEecCC--CCEEEEEEeCCCCEEEEEe
Q 003459 134 GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGED------NTVKLWDLTAGKLLHDFKCHE--GQIQCIDFHPHEFLLATGS 204 (818)
Q Consensus 134 ~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~D------g~I~IwDl~t~~~i~~~~~h~--~~I~sv~fspdg~~Lasgs 204 (818)
+... +..+...+..++|+| ||++|+.+..+ ..|.++|+..+... .+..+. ..+..+.|+|+|+.|+..+
T Consensus 179 ~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 179 ESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp CEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEE
T ss_pred ceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEe
Confidence 6544 444667789999999 99999887764 37888898765443 333333 2577889999999775544
Q ss_pred C-CC----eEEEEECCCCeEE--EEeCCCCC---CeeEEEEeCCCCEEEEEE----------CCCEEEEEecCCceeccc
Q 003459 205 A-DR----TVKFWDLETFELI--GSAGPETS---GVRCLTFNPDGRTLLCGL----------HESLKVFSWEPIRCHDAV 264 (818)
Q Consensus 205 ~-Dg----~I~IwDl~t~~~i--~~~~~~~~---~I~sl~fspdg~~Lasgs----------~d~I~Vwd~~~~~~~~~~ 264 (818)
. ++ .|++||+.+++.. ..+..+.. ....+.|+|||+.|+... ...|.+|+++.++.....
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVA 336 (388)
T ss_dssp EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEE
T ss_pred cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEec
Confidence 3 22 4999999988743 33332100 012237999999888542 225888888876654333
Q ss_pred cccc--c---------ceeeeeecCCCEEEEEE-cCCeEEEEEecCCC
Q 003459 265 DVGW--S---------RLSDLNVHEGKLLGCSY-NQSCVGVWVVDISR 300 (818)
Q Consensus 265 ~~~~--~---------~v~~l~~~~g~lLatg~-~Dg~V~IWdvd~~~ 300 (818)
.... . .......++|+.|+..+ .+|...||.++...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~ 384 (388)
T 3pe7_A 337 RHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE 384 (388)
T ss_dssp ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred cccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence 2221 1 22223458898777555 57888899887654
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.79 E-value=4.7e-18 Score=205.52 Aligned_cols=278 Identities=12% Similarity=0.125 Sum_probs=197.8
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCC-----eEEEEEcCCCCEEEEEECC---------Ce
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSG-----IDSVSFDSSEVLVAAGAAS---------GT 82 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~-----V~~l~fspdg~~Lasgs~D---------G~ 82 (818)
....+++|+| ++.+++++ ||.|++||+.++++...+.+|... ...+.|+|||++|+.++.+ +.
T Consensus 17 ~~~~~~~w~~-dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 17 LKLYSLRWIS-DHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCCEEECS-SSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred ccccccEECC-CCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3466899999 55777776 899999999999988888877643 2447899999999998876 66
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCe---------------
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGV--------------- 146 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~-l~~h~~~V--------------- 146 (818)
+.+||+.+++.. .+..|...+...+|+|||+.||.+. ++.|++||+.++...+. ..++...+
T Consensus 94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 779999999864 4666778899999999999999885 68999999988775432 12222222
Q ss_pred --EEEEEcCCCCEEEEEECCC------------------------------------eEEEEECCC---Ce--EEEEEe-
Q 003459 147 --NAIRFTPDGRWVVSGGEDN------------------------------------TVKLWDLTA---GK--LLHDFK- 182 (818)
Q Consensus 147 --~~l~fspdg~~L~sgs~Dg------------------------------------~I~IwDl~t---~~--~i~~~~- 182 (818)
..+.|+|||++|+.++.|. .|++||+.+ ++ ....+.
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 3489999999999875321 588899988 73 223333
Q ss_pred -----cCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCe----EEEE--e--CCCCCCee-----EEEEeCCCC
Q 003459 183 -----CHEGQIQCIDFHPHEFLLATGSA----DRTVKFWDLETFE----LIGS--A--GPETSGVR-----CLTFNPDGR 240 (818)
Q Consensus 183 -----~h~~~I~sv~fspdg~~Lasgs~----Dg~I~IwDl~t~~----~i~~--~--~~~~~~I~-----sl~fspdg~ 240 (818)
+|...+..++|+|||++++.... +..|++||+.+++ +... + ..+...+. ...|+|||+
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence 26677999999999997666543 3379999999886 2211 1 33444444 788999999
Q ss_pred EEE-EEECC----CEEEEEecCCceeccccccccceeeeeecCCCEEE-EEEc----CCeEEEEEecCCC
Q 003459 241 TLL-CGLHE----SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLG-CSYN----QSCVGVWVVDISR 300 (818)
Q Consensus 241 ~La-sgs~d----~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLa-tg~~----Dg~V~IWdvd~~~ 300 (818)
.|+ ..++. .|.+|+.+.+.........|.....+. .+++.|+ ++.. .+...||.++...
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred EEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 877 66543 277777777776666666666544333 4465555 4443 3456667665543
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=5.5e-17 Score=178.91 Aligned_cols=270 Identities=10% Similarity=0.079 Sum_probs=184.6
Q ss_pred EEEEEeCC--CeEEEEEC--CCCceEE--Eec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCeEEEEEcC-CC
Q 003459 31 VLVTGGED--HKVNLWAI--GKPNAIL--SLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE-EAKIVRTLTG-HR 101 (818)
Q Consensus 31 lLatgs~D--g~V~lWdl--~~~~~i~--~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~-t~~~v~~l~~-h~ 101 (818)
.+++|+.. +.|.+|++ .+++... ... .....+..++|+|++++|++++.+ .|.+|++. +++....... ..
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 35556543 56888765 4454322 121 234468899999999999998887 99999997 7876544321 11
Q ss_pred CCeEEEEEeCCCCE--EEEEE-------------CCCcEEEEECC-CCeEEEEEe----cCCCCeEEEEEcCCCCEEEEE
Q 003459 102 SNCISVDFHPFGEF--FASGS-------------LDTNLKIWDIR-KKGCIHTYK----GHTRGVNAIRFTPDGRWVVSG 161 (818)
Q Consensus 102 ~~V~sv~fspdg~~--Lasgs-------------~Dg~I~IwDl~-~~~~i~~l~----~h~~~V~~l~fspdg~~L~sg 161 (818)
+...+++|+|+|++ +++++ .+|.+.+|++. .++....+. .+...+.+++|+|||++|+++
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 23556899999994 44543 68999999997 465544433 245679999999999998887
Q ss_pred EC-CCeEEEEECC-CCeEE--EEEec--CCCCEEEEEEeCCCCEEEEEeC-CCeEEEEECC--CCeEEE---E---eCCC
Q 003459 162 GE-DNTVKLWDLT-AGKLL--HDFKC--HEGQIQCIDFHPHEFLLATGSA-DRTVKFWDLE--TFELIG---S---AGPE 226 (818)
Q Consensus 162 s~-Dg~I~IwDl~-t~~~i--~~~~~--h~~~I~sv~fspdg~~Lasgs~-Dg~I~IwDl~--t~~~i~---~---~~~~ 226 (818)
.. ++.|++||+. +++.. ..+.. +...+..++|+|+|++|++++. ++.|.+|++. +++... . +...
T Consensus 163 ~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 242 (365)
T 1jof_A 163 DLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPG 242 (365)
T ss_dssp ETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTT
T ss_pred cCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCC
Confidence 64 6799999998 67653 33332 3567899999999999888775 6899999865 565421 1 2111
Q ss_pred ----CC------CeeEEE-EeCCCCEEEEEE--CC-----CEEEEEec-CCceecc---cccc-ccceeeeeec---CCC
Q 003459 227 ----TS------GVRCLT-FNPDGRTLLCGL--HE-----SLKVFSWE-PIRCHDA---VDVG-WSRLSDLNVH---EGK 280 (818)
Q Consensus 227 ----~~------~I~sl~-fspdg~~Lasgs--~d-----~I~Vwd~~-~~~~~~~---~~~~-~~~v~~l~~~---~g~ 280 (818)
.. .+..++ |+|||++|+++. .+ .|.+|+++ .++.... .... .........+ +|+
T Consensus 243 ~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~ 322 (365)
T 1jof_A 243 IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE 322 (365)
T ss_dssp CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT
T ss_pred cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC
Confidence 11 478999 999999988664 33 69999997 4443321 2111 1122222336 799
Q ss_pred EEEEEEcC-CeEEEEEecCCCc
Q 003459 281 LLGCSYNQ-SCVGVWVVDISRI 301 (818)
Q Consensus 281 lLatg~~D-g~V~IWdvd~~~~ 301 (818)
+|+++..+ +.|.+|+++...+
T Consensus 323 ~l~v~~~~~~~v~v~~~~~~~l 344 (365)
T 1jof_A 323 WMAITDDQEGWLEIYRWKDEFL 344 (365)
T ss_dssp EEEEECSSSCEEEEEEEETTEE
T ss_pred EEEEEEcCCCeEEEEEEchhhC
Confidence 99988764 8999999998743
No 161
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=3.8e-17 Score=193.98 Aligned_cols=291 Identities=14% Similarity=0.031 Sum_probs=203.7
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEE--eCCCeEEEEECCCCceEEEecCCCCCeE---------EEEEc--CCCCE-EEE
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTG--GEDHKVNLWAIGKPNAILSLSGHTSGID---------SVSFD--SSEVL-VAA 76 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatg--s~Dg~V~lWdl~~~~~i~~l~~h~~~V~---------~l~fs--pdg~~-Las 76 (818)
.+.+|...|..++|++ +..+++.. +.++...||....+.....+..|...+. ...|+ |||+. |+.
T Consensus 18 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 18 LVASRSGRPACVGAVG-DEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHTCSCCEEEEEET-TEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHhhcCCccceeEEcC-CeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 4567999999999997 45555555 4578999999655566677777776666 66665 99998 776
Q ss_pred EEC-CCeEEEEECC--C-CeEEEEEcC-----CCCCeEEEEEeCCCCEEEEEECC----------CcEEEEECCC-----
Q 003459 77 GAA-SGTIKLWDLE--E-AKIVRTLTG-----HRSNCISVDFHPFGEFFASGSLD----------TNLKIWDIRK----- 132 (818)
Q Consensus 77 gs~-DG~I~IWDl~--t-~~~v~~l~~-----h~~~V~sv~fspdg~~Lasgs~D----------g~I~IwDl~~----- 132 (818)
++. +..|++|++. . +. ...+.. |...+..++|+|||+.|++++.+ ..|++||+.+
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 175 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD 175 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred EECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence 654 5667777765 2 43 445555 56678899999999999998876 5899999987
Q ss_pred -CeEEEEEe-cCCCCeEEEEEcCCCCEEEEEECC--------CeEEEEECC-CC---eEEEEEecCCCCEEEEEEeCCCC
Q 003459 133 -KGCIHTYK-GHTRGVNAIRFTPDGRWVVSGGED--------NTVKLWDLT-AG---KLLHDFKCHEGQIQCIDFHPHEF 198 (818)
Q Consensus 133 -~~~i~~l~-~h~~~V~~l~fspdg~~L~sgs~D--------g~I~IwDl~-t~---~~i~~~~~h~~~I~sv~fspdg~ 198 (818)
+.. ..+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ +.......+...+..+.|+|||+
T Consensus 176 ~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~ 254 (662)
T 3azo_A 176 RSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS 254 (662)
T ss_dssp GGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC
T ss_pred CCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe
Confidence 544 4454 556678889999999999988755 379999999 57 44444445578899999999999
Q ss_pred EEEEEeCCC--eEEEEECCCCeEEEEeCCCCCC--------eeEEEEeCCCCEEEEEECCCEEEEEecCC-ceecccccc
Q 003459 199 LLATGSADR--TVKFWDLETFELIGSAGPETSG--------VRCLTFNPDGRTLLCGLHESLKVFSWEPI-RCHDAVDVG 267 (818)
Q Consensus 199 ~Lasgs~Dg--~I~IwDl~t~~~i~~~~~~~~~--------I~sl~fspdg~~Lasgs~d~I~Vwd~~~~-~~~~~~~~~ 267 (818)
+++++..++ .|++||+.+++.......+... +..++|++++++++++..+..+||.++.. .....+..+
T Consensus 255 l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~ 334 (662)
T 3azo_A 255 LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGP 334 (662)
T ss_dssp EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECCSS
T ss_pred EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEecCC
Confidence 888888888 6777787777765444333222 56789999999999887655788865532 223444444
Q ss_pred ccceeee-eecCCCEEE-EEEcCCeEEEEE--ecCCCceee
Q 003459 268 WSRLSDL-NVHEGKLLG-CSYNQSCVGVWV--VDISRIEPY 304 (818)
Q Consensus 268 ~~~v~~l-~~~~g~lLa-tg~~Dg~V~IWd--vd~~~~~~~ 304 (818)
...+..+ ....+.+++ +++.+....+|. +++++...+
T Consensus 335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 335 WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence 4445555 333333443 445555555554 446655443
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=5.5e-17 Score=178.86 Aligned_cols=242 Identities=11% Similarity=0.117 Sum_probs=175.5
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC-CCceEEEecC-CCCCeEEEEEcCCCCE--EEEEE------------
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG-KPNAILSLSG-HTSGIDSVSFDSSEVL--VAAGA------------ 78 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~-~~~~i~~l~~-h~~~V~~l~fspdg~~--Lasgs------------ 78 (818)
+...+..++|+| ++++|++++.+ .|.+|++. +++....... ..+.+.+++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~sp-dg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDH-ERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECT-TSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECC-CCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 345688999999 56677888877 99999997 7765443321 1123567899999994 44543
Q ss_pred -CCCeEEEEECC-CCeEEEEEc----CCCCCeEEEEEeCCCCEEEEEEC-CCcEEEEECC-CCeEE--EEEe--cCCCCe
Q 003459 79 -ASGTIKLWDLE-EAKIVRTLT----GHRSNCISVDFHPFGEFFASGSL-DTNLKIWDIR-KKGCI--HTYK--GHTRGV 146 (818)
Q Consensus 79 -~DG~I~IWDl~-t~~~v~~l~----~h~~~V~sv~fspdg~~Lasgs~-Dg~I~IwDl~-~~~~i--~~l~--~h~~~V 146 (818)
.+|.+.+|++. +++....+. .+...+.+++|+|+|+++++++. ++.|++||+. +++.. ..+. .|...+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p 195 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP 195 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence 68999999997 466554443 24567999999999998887764 6799999998 66543 3343 245678
Q ss_pred EEEEEcCCCCEEEEEEC-CCeEEEEECC--CCeEE---EEEec-------CCC------CEEEEE-EeCCCCEEEEEeCC
Q 003459 147 NAIRFTPDGRWVVSGGE-DNTVKLWDLT--AGKLL---HDFKC-------HEG------QIQCID-FHPHEFLLATGSAD 206 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~-Dg~I~IwDl~--t~~~i---~~~~~-------h~~------~I~sv~-fspdg~~Lasgs~D 206 (818)
..++|+|||++|++++. ++.|.+|++. +++.. ..+.. |.. .+..++ |+|+|++|+++..+
T Consensus 196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 99999999999988875 6899999765 56543 22221 121 488999 99999988877643
Q ss_pred C------eEEEEECC-CCeEEE---EeCCCCCCeeEEEEeC---CCCEEEEEEC--CCEEEEEecCC
Q 003459 207 R------TVKFWDLE-TFELIG---SAGPETSGVRCLTFNP---DGRTLLCGLH--ESLKVFSWEPI 258 (818)
Q Consensus 207 g------~I~IwDl~-t~~~i~---~~~~~~~~I~sl~fsp---dg~~Lasgs~--d~I~Vwd~~~~ 258 (818)
. .|.+|++. +++... ....+...+..++|+| ||++|+++.. +.+.||+++..
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2 89999996 566543 2333445567899999 8999998865 46999999875
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=2e-17 Score=181.96 Aligned_cols=289 Identities=12% Similarity=-0.002 Sum_probs=189.4
Q ss_pred eeEEEEecCCCC-----EEEEEEeeCCCcEEEEEeCC--CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC
Q 003459 7 YKLQEFVAHSST-----VNCLKIGRKSSRVLVTGGED--HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA 79 (818)
Q Consensus 7 ~kl~~~~~H~~~-----V~~lafsp~~~~lLatgs~D--g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~ 79 (818)
..+..+..+... +.+++|+|++..++++...+ ..|.+||+.+++......++......+.|+|+|++|+.++.
T Consensus 21 ~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~ 100 (396)
T 3c5m_A 21 VKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN 100 (396)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET
T ss_pred cceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc
Confidence 345556555444 77889999655444444433 46888898877655443333333334789999999999999
Q ss_pred CCeEEEEECCCCeEEEEEcCCCCCeEE-------------------EEEeCCCCEEEEE-----ECCCcEEEEECCCCeE
Q 003459 80 SGTIKLWDLEEAKIVRTLTGHRSNCIS-------------------VDFHPFGEFFASG-----SLDTNLKIWDIRKKGC 135 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~~h~~~V~s-------------------v~fspdg~~Lasg-----s~Dg~I~IwDl~~~~~ 135 (818)
++.|++||+.+++.......+...... +.|+|+++.++.+ ..+..|++||+.+++.
T Consensus 101 ~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (396)
T 3c5m_A 101 ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGEL 180 (396)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCE
T ss_pred CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcE
Confidence 999999999998876666544442222 3456777765544 3567899999998876
Q ss_pred EEEEecCCCCeEEEEEcC-CCCEEEEEECC------CeEEEEECCCCeEEEEEecC-CCCEEEEEEeCCCCEEEEEeCC-
Q 003459 136 IHTYKGHTRGVNAIRFTP-DGRWVVSGGED------NTVKLWDLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSAD- 206 (818)
Q Consensus 136 i~~l~~h~~~V~~l~fsp-dg~~L~sgs~D------g~I~IwDl~t~~~i~~~~~h-~~~I~sv~fspdg~~Lasgs~D- 206 (818)
.... .+...+..+.|+| ++..|+..+.+ ..|.+||+..++........ ...+..+.|+|+|.+|+.++.+
T Consensus 181 ~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 181 EVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp EEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred Eeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 5544 4567789999999 88877776654 36899998766533322211 2257889999999987776543
Q ss_pred ----CeEEEEECCCCeEEEEeCCCCCCeeEEEEeC-CCCEEEEEEC-----------------CCEEEEEecCCceeccc
Q 003459 207 ----RTVKFWDLETFELIGSAGPETSGVRCLTFNP-DGRTLLCGLH-----------------ESLKVFSWEPIRCHDAV 264 (818)
Q Consensus 207 ----g~I~IwDl~t~~~i~~~~~~~~~I~sl~fsp-dg~~Lasgs~-----------------d~I~Vwd~~~~~~~~~~ 264 (818)
+.|++||+.+++........ ... +.|+| ||++++++.. ..+.+|+.+.++.....
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~ 336 (396)
T 3c5m_A 260 GQTDRVIYKANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLC 336 (396)
T ss_dssp TTCCEEEEEECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEE
T ss_pred CCccceEEEEECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEcc
Confidence 45999999988754433221 233 89999 9998887541 34777777766543222
Q ss_pred ccccc-----------ceeeeeecCCCEEEEEEc-CCeEEEEEecCC
Q 003459 265 DVGWS-----------RLSDLNVHEGKLLGCSYN-QSCVGVWVVDIS 299 (818)
Q Consensus 265 ~~~~~-----------~v~~l~~~~g~lLatg~~-Dg~V~IWdvd~~ 299 (818)
..... .......++|+.|+..+. ++...+|.++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~ 383 (396)
T 3c5m_A 337 KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVP 383 (396)
T ss_dssp ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred CCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEc
Confidence 21110 111233578888776654 566677766543
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=2.9e-16 Score=169.34 Aligned_cols=212 Identities=11% Similarity=0.074 Sum_probs=164.8
Q ss_pred eEEEEecCC-CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCC------CCeEEEEEcCCCCEEEEEECC
Q 003459 8 KLQEFVAHS-STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHT------SGIDSVSFDSSEVLVAAGAAS 80 (818)
Q Consensus 8 kl~~~~~H~-~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~------~~V~~l~fspdg~~Lasgs~D 80 (818)
.+..+..+. ..+..++|+|++..+++++..++.|.+||+.+++.+..+..+. ..+.+++|+|++++|++++.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 112 (349)
T 1jmx_B 33 VYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 112 (349)
T ss_dssp EEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEE
T ss_pred EEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEccc
Confidence 344454443 2578999999665566677788999999999998887776432 237889999999999998865
Q ss_pred ------------CeEEEEECCCCe---EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC--
Q 003459 81 ------------GTIKLWDLEEAK---IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-- 143 (818)
Q Consensus 81 ------------G~I~IWDl~t~~---~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~-- 143 (818)
+.|.+||+.+++ .+..+. +...+.+++|+|+|+ +++++ +.|++||+.+++.+..+..+.
T Consensus 113 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~ 188 (349)
T 1jmx_B 113 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWN 188 (349)
T ss_dssp EEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCC
T ss_pred ccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccC
Confidence 899999998843 334444 334688999999999 55553 449999999888777665331
Q ss_pred ------------------------------------------------------------------CCeEEEEEcC-CCC
Q 003459 144 ------------------------------------------------------------------RGVNAIRFTP-DGR 156 (818)
Q Consensus 144 ------------------------------------------------------------------~~V~~l~fsp-dg~ 156 (818)
..+..++|+| +|+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~ 268 (349)
T 1jmx_B 189 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN 268 (349)
T ss_dssp CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTT
T ss_pred CccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCC
Confidence 1345677889 999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC
Q 003459 157 WVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (818)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~ 226 (818)
+++++ ++.|.+||+.+++.+..+.. ...+.+++|+|++.+|++++.++.|++||+.+++.+..+...
T Consensus 269 ~l~~~--~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 269 QIYGV--LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEEE--ESEEEEEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred EEEEE--cCeEEEEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 99988 88999999999998888764 345779999999998888888999999999999988877544
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.74 E-value=2.2e-15 Score=159.33 Aligned_cols=238 Identities=11% Similarity=0.206 Sum_probs=182.4
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec------CCCCCeEEEEE-cCCCCEEEEEEC-CCeEEEE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS------GHTSGIDSVSF-DSSEVLVAAGAA-SGTIKLW 86 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~------~h~~~V~~l~f-spdg~~Lasgs~-DG~I~IW 86 (818)
|-..+.++++++ +++++++...++.|.+||.. ++.+..+. ++...+.++++ .+++.++++... ++.|.+|
T Consensus 28 ~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECC-CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 446799999998 56788888889999999976 66666654 24457899999 467766666533 8899999
Q ss_pred ECCCCeEEEEEcC-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 003459 87 DLEEAKIVRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 87 Dl~t~~~v~~l~~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~--~h~~~V~~l~fspdg~~L~sgs~ 163 (818)
| .+++.+..+.. +...+..+++.++|+++++...++.|++||.. ++.+..+. .+...+..++++++|+++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 66777777643 44578999999999988777778999999964 55666664 34456899999999997777777
Q ss_pred CCeEEEEECCCCeEEEEEecC--CCCEEEEEEeCCCCEEEEEeCCC-eEEEEECCCCeEEEEeCCC--CCCeeEEEEeCC
Q 003459 164 DNTVKLWDLTAGKLLHDFKCH--EGQIQCIDFHPHEFLLATGSADR-TVKFWDLETFELIGSAGPE--TSGVRCLTFNPD 238 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h--~~~I~sv~fspdg~~Lasgs~Dg-~I~IwDl~t~~~i~~~~~~--~~~I~sl~fspd 238 (818)
++.|++||. .++.+..+..+ ...+..++++++|.++++...++ .|.+||. +++.+..+..+ ...+.+++|+|+
T Consensus 184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCC
Confidence 899999997 46666666543 35789999999999888888776 9999995 46666555433 234789999999
Q ss_pred CCEEEEEECCCEEEEEecCC
Q 003459 239 GRTLLCGLHESLKVFSWEPI 258 (818)
Q Consensus 239 g~~Lasgs~d~I~Vwd~~~~ 258 (818)
|+++++..++.|++|++...
T Consensus 262 g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 262 GSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp TEEEEEETTTEEEEEECSCC
T ss_pred CcEEEECCCCeEEEEEcccc
Confidence 98777765557999988653
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.74 E-value=3.5e-16 Score=172.19 Aligned_cols=265 Identities=12% Similarity=0.022 Sum_probs=190.7
Q ss_pred EEECCCCceEEEecCCCCCeEE-----EEEcCCCCEEEEEEC-CC--eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCC
Q 003459 43 LWAIGKPNAILSLSGHTSGIDS-----VSFDSSEVLVAAGAA-SG--TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114 (818)
Q Consensus 43 lWdl~~~~~i~~l~~h~~~V~~-----l~fspdg~~Lasgs~-DG--~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~ 114 (818)
.++..++..+..+..|...... .+|+|||++|+.++. +| .|.+||+.+++......++...+..+.|+|+|+
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~ 93 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDD 93 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCC
Confidence 4567778888888887766665 889999999998887 66 488999999988877777766666788999999
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEE--EcCCCCEEEEEE----------------------CCCeEEEE
Q 003459 115 FFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIR--FTPDGRWVVSGG----------------------EDNTVKLW 170 (818)
Q Consensus 115 ~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~--fspdg~~L~sgs----------------------~Dg~I~Iw 170 (818)
+|+.++.++.|++||+.+++....+..+...+.... +++++++++... .++.|++|
T Consensus 94 ~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 173 (388)
T 3pe7_A 94 ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV 173 (388)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence 999999999999999999988777776666554444 489999887432 34689999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeC-CCCEEEEEeCC------CeEEEEECCCCeEEEEeCCCC-CCeeEEEEeCCCCEE
Q 003459 171 DLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSAD------RTVKFWDLETFELIGSAGPET-SGVRCLTFNPDGRTL 242 (818)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sv~fsp-dg~~Lasgs~D------g~I~IwDl~t~~~i~~~~~~~-~~I~sl~fspdg~~L 242 (818)
|+.+++..... .+...+..+.|+| +|..|+....+ ..|++||...++......... ..+..+.|+|||+.|
T Consensus 174 d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l 252 (388)
T 3pe7_A 174 DLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSAL 252 (388)
T ss_dssp ETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCE
T ss_pred ECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEE
Confidence 99998755443 4567789999999 99988887753 378888987665433333222 247788999999977
Q ss_pred EEEEC--C--C--EEEEEecCCceeccccccc------cceeeeeecCCCEEEEE---------EcCCeEEEEEecCCCc
Q 003459 243 LCGLH--E--S--LKVFSWEPIRCHDAVDVGW------SRLSDLNVHEGKLLGCS---------YNQSCVGVWVVDISRI 301 (818)
Q Consensus 243 asgs~--d--~--I~Vwd~~~~~~~~~~~~~~------~~v~~l~~~~g~lLatg---------~~Dg~V~IWdvd~~~~ 301 (818)
+..+. + . |.+||+++++......... ..-.....++|+.|+.. ..+..|++|++++++.
T Consensus 253 ~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 253 VYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp EEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred EEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 65432 2 2 7788877766433322111 01011245778777654 4466899999999887
Q ss_pred eeeeecc
Q 003459 302 EPYTIGS 308 (818)
Q Consensus 302 ~~~~~~~ 308 (818)
..+..+.
T Consensus 333 ~~l~~~~ 339 (388)
T 3pe7_A 333 HRVARHD 339 (388)
T ss_dssp EEEEECC
T ss_pred EEecccc
Confidence 7655443
No 167
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.73 E-value=1.3e-16 Score=186.95 Aligned_cols=235 Identities=11% Similarity=0.085 Sum_probs=176.3
Q ss_pred EEEEecCC-CCEEEEEEeeCCCcEEEEEeC---CCeEEEEECC---CCceEEEecCCCCCeEEEEEcCCCC-EEEEEECC
Q 003459 9 LQEFVAHS-STVNCLKIGRKSSRVLVTGGE---DHKVNLWAIG---KPNAILSLSGHTSGIDSVSFDSSEV-LVAAGAAS 80 (818)
Q Consensus 9 l~~~~~H~-~~V~~lafsp~~~~lLatgs~---Dg~V~lWdl~---~~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~D 80 (818)
...+..|. ..|.+++|+|+ +++++++. +....+|.+. .+... .+..+ ..+...+|+|+++ .+++.+.+
T Consensus 56 ~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~ 131 (582)
T 3o4h_A 56 TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATE 131 (582)
T ss_dssp EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECS
T ss_pred cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCC
Confidence 34455566 58999999995 77887775 4555665442 23333 44332 2345678888875 23344445
Q ss_pred CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC----CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCC
Q 003459 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD----TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGR 156 (818)
Q Consensus 81 G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D----g~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~ 156 (818)
+.+.+||+.+++.......+. .+++|+|||++|++++.+ +.|++||+.+++.. .+..|...+..++|+|||+
T Consensus 132 ~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~ 207 (582)
T 3o4h_A 132 DRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK 207 (582)
T ss_dssp SCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC
T ss_pred CCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC
Confidence 556699999988766555333 789999999999988877 78999999888754 6677888899999999999
Q ss_pred EEEEEECCC--eEEEEECCCCeEEEEEecCCCCEEEEE--------EeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC
Q 003459 157 WVVSGGEDN--TVKLWDLTAGKLLHDFKCHEGQIQCID--------FHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (818)
Q Consensus 157 ~L~sgs~Dg--~I~IwDl~t~~~i~~~~~h~~~I~sv~--------fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~ 226 (818)
+|+++..++ .|++||+.+++.. .+..|...+..+. |+|+|.++++++.|+++++|++ ++.+. ..
T Consensus 208 ~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~ 281 (582)
T 3o4h_A 208 VTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---AP 281 (582)
T ss_dssp EEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CC
T ss_pred EEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cC
Confidence 999888888 8999999998877 6666776666667 9999999999999999999999 66654 33
Q ss_pred CCCeeEEEEeCCCCEEEEEECCC--EEEEEecCC
Q 003459 227 TSGVRCLTFNPDGRTLLCGLHES--LKVFSWEPI 258 (818)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~d~--I~Vwd~~~~ 258 (818)
.+.+.+++|+ +|+++++++.+. -.+|.++..
T Consensus 282 ~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 282 QGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp SSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred CCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 4678899999 999888765542 566666644
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=1.5e-15 Score=165.16 Aligned_cols=239 Identities=12% Similarity=0.174 Sum_probs=184.2
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCC------------------------CeEEEEECCCCceEEEec-CCCCCeEEEEEcCC
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGED------------------------HKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSS 70 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~D------------------------g~V~lWdl~~~~~i~~l~-~h~~~V~~l~fspd 70 (818)
-+.|.+++++| +++++++...+ +.|.+||..+++.+..+. ++-.....++++++
T Consensus 23 l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 46799999999 56778877776 479999998888876664 44567899999999
Q ss_pred CCEEEEEECCCeEEEEECCCCe-EEEEE---------cCCCCCeEEEEEeC-CCCEEEEEE-CCCcEEEEECCCCeEEEE
Q 003459 71 EVLVAAGAASGTIKLWDLEEAK-IVRTL---------TGHRSNCISVDFHP-FGEFFASGS-LDTNLKIWDIRKKGCIHT 138 (818)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~-~v~~l---------~~h~~~V~sv~fsp-dg~~Lasgs-~Dg~I~IwDl~~~~~i~~ 138 (818)
|+++++...++.|++||..... .+..+ .++......++|+| ++.++++.+ .++.|++|| .++..+..
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEE
Confidence 9988888889999999976442 45555 23445788999999 777777776 689999999 56777777
Q ss_pred EecCC----------CCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEeCCCCEEEEE--
Q 003459 139 YKGHT----------RGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATG-- 203 (818)
Q Consensus 139 l~~h~----------~~V~~l~fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sv~fspdg~~Lasg-- 203 (818)
+.... .....++++|+ +.++++...++.|++||..+++.+..+. .+...+..++|+| +..++..
T Consensus 181 ~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~ 259 (329)
T 3fvz_A 181 WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGK 259 (329)
T ss_dssp ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECC
T ss_pred eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCC
Confidence 64322 34889999998 6666777778899999999899888885 3456789999999 4444433
Q ss_pred -----eCCCeEEEEECCCCeEEEEeC---CCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003459 204 -----SADRTVKFWDLETFELIGSAG---PETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 204 -----s~Dg~I~IwDl~t~~~i~~~~---~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (818)
..+..|++||..+++.+..+. .+...+.+++++|+|.++++...+ .|++|+.+.
T Consensus 260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 334589999999999998874 455678999999999655555433 688888764
No 169
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=2.8e-15 Score=162.46 Aligned_cols=270 Identities=11% Similarity=0.100 Sum_probs=184.3
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEE--------eCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTG--------GEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA 78 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatg--------s~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs 78 (818)
..+..+. .-..+..+++ ++.+++++. ..++.|.+|++.+++... + ..+..++|+|||++|+.++
T Consensus 6 ~~~~~l~-~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~ 77 (347)
T 2gop_A 6 WNEKTFA-KFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMR 77 (347)
T ss_dssp ----CCC-CSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEE
T ss_pred CCcccce-eeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEE
Confidence 3444443 3345778888 465554443 125789999998776533 3 4688999999999998876
Q ss_pred CC---C--eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC---------------------------CcEE
Q 003459 79 AS---G--TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD---------------------------TNLK 126 (818)
Q Consensus 79 ~D---G--~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D---------------------------g~I~ 126 (818)
.+ + .|++||+.+++.......+ . +..+.|+|+|+.|+.++.+ ..|+
T Consensus 78 ~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (347)
T 2gop_A 78 ANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFW 155 (347)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEE
T ss_pred eccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEE
Confidence 54 3 4888899888876655533 3 9999999999998887632 5799
Q ss_pred EEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC---------eEEEEECCCCeEEEEEecCCCCEEEEEEeCCC
Q 003459 127 IWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN---------TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHE 197 (818)
Q Consensus 127 IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg---------~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg 197 (818)
+||+.+++.+..+.. . .+..+.|+||| +++++..++ .|.++| +++.. .+..+ ..+..+ +|+|
T Consensus 156 ~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~-~l~~~-~~~~~~--spdg 226 (347)
T 2gop_A 156 IFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEE-KMFEK-VSFYAV--DSDG 226 (347)
T ss_dssp EEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEE-EEEEE-ESEEEE--EECS
T ss_pred EEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceE-EeccC-cceeeE--CCCC
Confidence 999998887455554 3 78899999999 777776542 455566 55543 33334 555544 9999
Q ss_pred CEEEEEeCC--------CeEEEEECCCCeEEEEeCCCCCCeeE-EEEeCCCCEEEEEECC-CEEEEEecCCceecccccc
Q 003459 198 FLLATGSAD--------RTVKFWDLETFELIGSAGPETSGVRC-LTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG 267 (818)
Q Consensus 198 ~~Lasgs~D--------g~I~IwDl~t~~~i~~~~~~~~~I~s-l~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~ 267 (818)
++|+.++.+ ..|++|| +++.......+...+.. +.|+ || +++++..+ ..+|| ++.++.......
T Consensus 227 ~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~- 300 (347)
T 2gop_A 227 ERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKG- 300 (347)
T ss_dssp SCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECS-
T ss_pred CEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecC-
Confidence 988887754 3688888 66655555555677886 8999 88 77766555 58999 875444333322
Q ss_pred ccceeeeeecCCCEEEEEEcCCeE-EEEEecCCCcee
Q 003459 268 WSRLSDLNVHEGKLLGCSYNQSCV-GVWVVDISRIEP 303 (818)
Q Consensus 268 ~~~v~~l~~~~g~lLatg~~Dg~V-~IWdvd~~~~~~ 303 (818)
...+..+.+.. .++++++.++.. .+|.++ ++...
T Consensus 301 ~~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~-g~~~~ 335 (347)
T 2gop_A 301 RHWIMGFDVDE-IVVYLKETATRLRELFTWD-GEEKQ 335 (347)
T ss_dssp SSEEEEEEESS-SEEEEEECSSSCCEEEEES-SSEEE
T ss_pred CCeEEeeeeeC-cEEEEEcCCCChHHheEeC-CcEEE
Confidence 33455566655 788888887776 889887 54333
No 170
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=195.95 Aligned_cols=279 Identities=8% Similarity=0.032 Sum_probs=189.4
Q ss_pred CEEEEEEeeCCCcEEEEEeC---------CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 18 TVNCLKIGRKSSRVLVTGGE---------DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~---------Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
.|.+++|+| ++++|++++. ++.|++||+.+++.+.. ......+..++|+|||+.|+++. ++.|++||+
T Consensus 61 ~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~ 137 (719)
T 1z68_A 61 NASNYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQR 137 (719)
T ss_dssp TCSEEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESS
T ss_pred ceeeEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeC
Confidence 489999999 5566777665 68999999988876210 11135688999999999999885 789999999
Q ss_pred CCCeEEEEE-cCCCCCe-----------------EEEEEeCCCCEEEEEECCC---------------------------
Q 003459 89 EEAKIVRTL-TGHRSNC-----------------ISVDFHPFGEFFASGSLDT--------------------------- 123 (818)
Q Consensus 89 ~t~~~v~~l-~~h~~~V-----------------~sv~fspdg~~Lasgs~Dg--------------------------- 123 (818)
.+++..... .++...+ .+++|+|||++|++++.|.
T Consensus 138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~ 217 (719)
T 1z68_A 138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKA 217 (719)
T ss_dssp TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBT
T ss_pred CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCC
Confidence 988765433 2333222 4899999999999987652
Q ss_pred -------cEEEEECCCCeEE---E-----EEecCCCCeEEEEEcCCCCEEEEEECC----CeEEEEE----CCCCeEEEE
Q 003459 124 -------NLKIWDIRKKGCI---H-----TYKGHTRGVNAIRFTPDGRWVVSGGED----NTVKLWD----LTAGKLLHD 180 (818)
Q Consensus 124 -------~I~IwDl~~~~~i---~-----~l~~h~~~V~~l~fspdg~~L~sgs~D----g~I~IwD----l~t~~~i~~ 180 (818)
.|++||+.+++.. . .+.+|...+..++|+||++++++.... ..|.+|| +.+++....
T Consensus 218 g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 218 GAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp TSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred CCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 7899999887642 1 123577789999999998877765433 2488999 877765544
Q ss_pred E----ecCCCCEE-----EEEEeCCCCEEEE--EeCCC--eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003459 181 F----KCHEGQIQ-----CIDFHPHEFLLAT--GSADR--TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 181 ~----~~h~~~I~-----sv~fspdg~~Las--gs~Dg--~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (818)
+ ..|...+. .+.|+|+|..|+. +..+| .|++||+.+++ ...+..+...+..+.++ +|+.|+..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEe
Confidence 4 35666666 7899999986554 44555 57788887776 34455555668888878 8887775543
Q ss_pred ------CCEEEEEecC--Cce-eccccc----cccceeee-eecCCCEEEE-EEcC--CeEEEEEecCCCc
Q 003459 248 ------ESLKVFSWEP--IRC-HDAVDV----GWSRLSDL-NVHEGKLLGC-SYNQ--SCVGVWVVDISRI 301 (818)
Q Consensus 248 ------d~I~Vwd~~~--~~~-~~~~~~----~~~~v~~l-~~~~g~lLat-g~~D--g~V~IWdvd~~~~ 301 (818)
+..++|.++. +.. ...+.. +...+... ..++++.++. ++.+ ..+.+|++..++.
T Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 3488998865 211 111211 11222233 3466766654 3333 4678888776653
No 171
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.72 E-value=3.2e-15 Score=159.22 Aligned_cols=246 Identities=13% Similarity=0.107 Sum_probs=187.6
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
.++..+..+.....+++|+|++..+++++..++.|..|+..++ ...+..+...+.+++|+++++++++...++.|.+|
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQ 95 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEE
Confidence 4556677788889999999966558899999999999999876 66677777889999999999988777667899999
Q ss_pred ECCCCeEEEEEcCC----CCCeEEEEEeCCCCEEEEE----E-------------CCCcEEEEECCCCeEEEEEecCCCC
Q 003459 87 DLEEAKIVRTLTGH----RSNCISVDFHPFGEFFASG----S-------------LDTNLKIWDIRKKGCIHTYKGHTRG 145 (818)
Q Consensus 87 Dl~t~~~v~~l~~h----~~~V~sv~fspdg~~Lasg----s-------------~Dg~I~IwDl~~~~~i~~l~~h~~~ 145 (818)
|..+++........ ...+..++++|+|+++++. + ..+.|+.||.. ++ +..+..+...
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~ 173 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVK 173 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSS
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCC
Confidence 99888765443321 2346689999999988873 2 13466666655 43 4445556677
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECC-CCeE---EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 003459 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLT-AGKL---LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG 221 (818)
Q Consensus 146 V~~l~fspdg~~L~sgs~Dg~I~IwDl~-t~~~---i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~ 221 (818)
...++|+|+|+.|++.+.++.|.+||+. +++. ...+..+...+.+++++++|.++++. ++.|.+||.+ ++.+.
T Consensus 174 ~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~ 250 (296)
T 3e5z_A 174 PNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELG 250 (296)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEE
T ss_pred CccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEE
Confidence 8999999999999777778999999987 5554 33333345567789999999876666 8899999987 77777
Q ss_pred EeCCCCCCeeEEEE-eCCCCEEEEEECCCEEEEEecCCce
Q 003459 222 SAGPETSGVRCLTF-NPDGRTLLCGLHESLKVFSWEPIRC 260 (818)
Q Consensus 222 ~~~~~~~~I~sl~f-spdg~~Lasgs~d~I~Vwd~~~~~~ 260 (818)
.+..+.. +.+++| .++++.|++++.+++.-++.++.+.
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~ 289 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGL 289 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEcccccc
Confidence 7776666 899999 5899999999888665556555443
No 172
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.69 E-value=1.1e-15 Score=184.73 Aligned_cols=244 Identities=14% Similarity=0.122 Sum_probs=178.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCC-----eEEEEEeCCCCEEEEEECC---------CcE
Q 003459 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSN-----CISVDFHPFGEFFASGSLD---------TNL 125 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~-----V~sv~fspdg~~Lasgs~D---------g~I 125 (818)
....++.|+|++.+|+++ ||.|++||+.+++....+.+|... ...+.|+|||++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999988886 999999999999988888877643 2347899999999998876 667
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE-ecCCCCE----------------
Q 003459 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF-KCHEGQI---------------- 188 (818)
Q Consensus 126 ~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~-~~h~~~I---------------- 188 (818)
++||+.+++.. .+..|...+...+|||||++|+.+ .++.|++||+.+++..... .++...+
T Consensus 95 ~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~ 172 (740)
T 4a5s_A 95 DIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA 172 (740)
T ss_dssp EEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred EEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCC
Confidence 89999998754 466677889999999999999988 4789999999887754322 2222222
Q ss_pred -EEEEEeCCCCEEEEEeCCC------------------------------------eEEEEECCC---C---eEEEEeC-
Q 003459 189 -QCIDFHPHEFLLATGSADR------------------------------------TVKFWDLET---F---ELIGSAG- 224 (818)
Q Consensus 189 -~sv~fspdg~~Lasgs~Dg------------------------------------~I~IwDl~t---~---~~i~~~~- 224 (818)
..+.|+|||+.||.++.|. .|++||+.+ + +......
T Consensus 173 ~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 173 YSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp SBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 3489999999999875321 588899998 7 4333222
Q ss_pred ----CCCCCeeEEEEeCCCCEEEEEECC-----CEEEEEecCCc----eeccc------cccccc----eeeeeecCCCE
Q 003459 225 ----PETSGVRCLTFNPDGRTLLCGLHE-----SLKVFSWEPIR----CHDAV------DVGWSR----LSDLNVHEGKL 281 (818)
Q Consensus 225 ----~~~~~I~sl~fspdg~~Lasgs~d-----~I~Vwd~~~~~----~~~~~------~~~~~~----v~~l~~~~g~l 281 (818)
.+...+..++|+|||+.++..... .|.+||.++++ |.... ...|-. ......+||+.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~ 332 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNS 332 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSE
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCE
Confidence 266778999999999977654322 38888988887 44332 222322 12344689988
Q ss_pred EE-EEEc-C--CeEEEEEecCCCceeeeec
Q 003459 282 LG-CSYN-Q--SCVGVWVVDISRIEPYTIG 307 (818)
Q Consensus 282 La-tg~~-D--g~V~IWdvd~~~~~~~~~~ 307 (818)
++ ..+. + ..|++|+++++...++..+
T Consensus 333 l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g 362 (740)
T 4a5s_A 333 FYKIISNEEGYRHICYFQIDKKDCTFITKG 362 (740)
T ss_dssp EEEEEECTTSCEEEEEEETTCSSCEESCCS
T ss_pred EEEEEEcCCCceEEEEEECCCCceEecccC
Confidence 76 5554 3 4688888888887766544
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.69 E-value=1.8e-15 Score=179.60 Aligned_cols=249 Identities=12% Similarity=0.044 Sum_probs=174.2
Q ss_pred EEEEecCCCCEE---------EEEEe--eCCCc-EEEEEeCCCeEEEEECC--CCceEEEecC-----CCCCeEEEEEcC
Q 003459 9 LQEFVAHSSTVN---------CLKIG--RKSSR-VLVTGGEDHKVNLWAIG--KPNAILSLSG-----HTSGIDSVSFDS 69 (818)
Q Consensus 9 l~~~~~H~~~V~---------~lafs--p~~~~-lLatgs~Dg~V~lWdl~--~~~~i~~l~~-----h~~~V~~l~fsp 69 (818)
.+.+..|...|. ...|+ |++.. ++++...+..|.+|++. .......+.. |...+.+++|+|
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp 139 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP 139 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC
Confidence 445666776666 66676 86665 44444446677777765 2034455555 667889999999
Q ss_pred CCCEEEEEECC----------CeEEEEECCC------CeEEEEEc-CCCCCeEEEEEeCCCCEEEEEECC--------Cc
Q 003459 70 SEVLVAAGAAS----------GTIKLWDLEE------AKIVRTLT-GHRSNCISVDFHPFGEFFASGSLD--------TN 124 (818)
Q Consensus 70 dg~~Lasgs~D----------G~I~IWDl~t------~~~v~~l~-~h~~~V~sv~fspdg~~Lasgs~D--------g~ 124 (818)
||+.|++++.+ ..|++||+.+ ++. ..+. .+...+..++|+|||++|+.++.+ ..
T Consensus 140 Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~ 218 (662)
T 3azo_A 140 ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTE 218 (662)
T ss_dssp TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEE
T ss_pred CCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcE
Confidence 99999998877 5899999988 554 3444 556678889999999999988755 37
Q ss_pred EEEEECC-CC---eEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEecCCCC--------EEE
Q 003459 125 LKIWDIR-KK---GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN--TVKLWDLTAGKLLHDFKCHEGQ--------IQC 190 (818)
Q Consensus 125 I~IwDl~-~~---~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg--~I~IwDl~t~~~i~~~~~h~~~--------I~s 190 (818)
|++||+. ++ +.......|...+..+.|+|||++++++..++ .|++||+.+++.......+... +..
T Consensus 219 i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~ 298 (662)
T 3azo_A 219 LKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRW 298 (662)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCS
T ss_pred EEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCce
Confidence 9999998 56 44444455678899999999999888887788 6777787677654433322221 467
Q ss_pred EEEeCCCCEEEEEeCCCeEEEE--ECCCCeEEEEeCCCCCCeeEE-EEeCCCCEEEEEECC-CEEEEEec--CCce
Q 003459 191 IDFHPHEFLLATGSADRTVKFW--DLETFELIGSAGPETSGVRCL-TFNPDGRTLLCGLHE-SLKVFSWE--PIRC 260 (818)
Q Consensus 191 v~fspdg~~Lasgs~Dg~I~Iw--Dl~t~~~i~~~~~~~~~I~sl-~fspdg~~Lasgs~d-~I~Vwd~~--~~~~ 260 (818)
++|+|++.+++++.. +.++|| |+.+++ +..+..+...+..+ +++.+.-++++++.+ ...||.++ .++.
T Consensus 299 ~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 299 FAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence 899999999999998 998888 666665 56666666667766 444333333344444 24566554 5444
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.68 E-value=1.3e-15 Score=167.41 Aligned_cols=262 Identities=11% Similarity=0.014 Sum_probs=181.5
Q ss_pred EEEECCCCceEEEecCCCCC-----eEEEEEcCCCCEEEEEECC---CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC
Q 003459 42 NLWAIGKPNAILSLSGHTSG-----IDSVSFDSSEVLVAAGAAS---GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG 113 (818)
Q Consensus 42 ~lWdl~~~~~i~~l~~h~~~-----V~~l~fspdg~~Lasgs~D---G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg 113 (818)
..+|..++..+..+..+... +.+++|+|+|++|+.+... ..|.+||+.+++......++......+.|+|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 34577788777777655443 7788999999998877543 478999999887655444333333347899999
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEE-------------------EEEcCCCCEEEEE-----ECCCeEEE
Q 003459 114 EFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNA-------------------IRFTPDGRWVVSG-----GEDNTVKL 169 (818)
Q Consensus 114 ~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~-------------------l~fspdg~~L~sg-----s~Dg~I~I 169 (818)
++|+.++.++.|++||+.+++.......+...... +.|+|++++++.+ ..+..|++
T Consensus 93 ~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~ 172 (396)
T 3c5m_A 93 RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIK 172 (396)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEE
T ss_pred CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEE
Confidence 99999999999999999988766665544442222 3467777766654 35668999
Q ss_pred EECCCCeEEEEEecCCCCEEEEEEeC-CCCEEEEEeCC------CeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCCCE
Q 003459 170 WDLTAGKLLHDFKCHEGQIQCIDFHP-HEFLLATGSAD------RTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRT 241 (818)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sv~fsp-dg~~Lasgs~D------g~I~IwDl~t~~~i~~~~~~-~~~I~sl~fspdg~~ 241 (818)
||+.+++..... .+...+..+.|+| ++..|+..+.+ ..|++||+..++........ ...+..+.|+|||++
T Consensus 173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 173 VDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred EECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 999988765554 3567889999999 78877766543 36899998776543333321 235788999999998
Q ss_pred EEEEECC----C--EEEEEecCCceeccccccccceeeeeec-CCCEEEEEE----------------cCCeEEEEEecC
Q 003459 242 LLCGLHE----S--LKVFSWEPIRCHDAVDVGWSRLSDLNVH-EGKLLGCSY----------------NQSCVGVWVVDI 298 (818)
Q Consensus 242 Lasgs~d----~--I~Vwd~~~~~~~~~~~~~~~~v~~l~~~-~g~lLatg~----------------~Dg~V~IWdvd~ 298 (818)
|+.++.+ . |.+|++.+++......... ......+ +|+++++++ .++.|++|++++
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~--~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~ 329 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMPP--CSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA 329 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECCS--EEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCCC--CCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc
Confidence 7765322 3 7888877765543322211 1233446 899888765 347899999998
Q ss_pred CCceeeee
Q 003459 299 SRIEPYTI 306 (818)
Q Consensus 299 ~~~~~~~~ 306 (818)
++...+..
T Consensus 330 ~~~~~l~~ 337 (396)
T 3c5m_A 330 KSAQKLCK 337 (396)
T ss_dssp TBCCEEEE
T ss_pred CceEEccC
Confidence 87665443
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=4.5e-13 Score=141.03 Aligned_cols=283 Identities=7% Similarity=0.006 Sum_probs=194.6
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEE-ecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~-l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
.+..+...+.++++.+ +++++++...++.|.+||.. ++.... +..+...+.++++++++.++++...++.|..||..
T Consensus 9 ~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSD-KGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp ECCSSSCCEEEEEECT-TSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cCCCcCCCccceEECC-CCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 4556677899999998 56666666567899999987 543322 22345789999999999988777668899999986
Q ss_pred CCeEEE-EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeE
Q 003459 90 EAKIVR-TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWVVSGGEDNTV 167 (818)
Q Consensus 90 t~~~v~-~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~-l~~h~~~V~~l~fspdg~~L~sgs~Dg~I 167 (818)
++... .+......+..+++.++|.++++...++.|..||. +++.... ...+...+..+++.++|+.+++...++.|
T Consensus 87 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i 164 (299)
T 2z2n_A 87 -GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI 164 (299)
T ss_dssp -SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred -CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence 44322 22234557899999999988777777889999998 5544322 23345678999999999877777667899
Q ss_pred EEEECCCCeEEEE-EecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE-eCCCCCCeeEEEEeCCCCEEEEE
Q 003459 168 KLWDLTAGKLLHD-FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCG 245 (818)
Q Consensus 168 ~IwDl~t~~~i~~-~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~-~~~~~~~I~sl~fspdg~~Lasg 245 (818)
..||. +++.... .......+.++++.++|.++++...++.|.+||. +++.... .......+.+++++++|+++++.
T Consensus 165 ~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 165 GRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence 99999 6665432 2233456889999999998777767889999999 6664432 23345678999999999866655
Q ss_pred E-CCCEEEEEecCCceecc-ccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCc
Q 003459 246 L-HESLKVFSWEPIRCHDA-VDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 246 s-~d~I~Vwd~~~~~~~~~-~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~ 301 (818)
. .++|.+|+.+ +..... ..........+...+|.+.++. ..+.|..++.+.+++
T Consensus 243 ~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~g~l~v~~-~~~~l~~~~~~~~~~ 298 (299)
T 2z2n_A 243 WGANKIGRLTSN-NIIEEYPIQIKSAEPHGICFDGETIWFAM-ECDKIGKLTLIKDNM 298 (299)
T ss_dssp TTTTEEEEEETT-TEEEEEECSSSSCCEEEEEECSSCEEEEE-TTTEEEEEEEC----
T ss_pred cCCceEEEECCC-CceEEEeCCCCCCccceEEecCCCEEEEe-cCCcEEEEEcCcccC
Confidence 3 4568888873 322211 1222233445555566655554 367777777776543
No 176
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.67 E-value=1.9e-14 Score=156.43 Aligned_cols=240 Identities=14% Similarity=0.173 Sum_probs=184.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECC------------------------CeEEEEECCCCeEEEEEc-CCCCCeEEEEEeCCC
Q 003459 59 TSGIDSVSFDSSEVLVAAGAAS------------------------GTIKLWDLEEAKIVRTLT-GHRSNCISVDFHPFG 113 (818)
Q Consensus 59 ~~~V~~l~fspdg~~Lasgs~D------------------------G~I~IWDl~t~~~v~~l~-~h~~~V~sv~fspdg 113 (818)
-..+.+++++++|+++++...+ +.|.+||..+++.+..+. ++-.....++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3579999999999999887776 479999999999887765 344678999999999
Q ss_pred CEEEEEECCCcEEEEECCCCe-EEEEE---------ecCCCCeEEEEEcC-CCCEEEEEE-CCCeEEEEECCCCeEEEEE
Q 003459 114 EFFASGSLDTNLKIWDIRKKG-CIHTY---------KGHTRGVNAIRFTP-DGRWVVSGG-EDNTVKLWDLTAGKLLHDF 181 (818)
Q Consensus 114 ~~Lasgs~Dg~I~IwDl~~~~-~i~~l---------~~h~~~V~~l~fsp-dg~~L~sgs-~Dg~I~IwDl~t~~~i~~~ 181 (818)
+++++...++.|++||..... .+..+ ..+......++|+| +|.++++.+ .++.|++|| .+++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 988888888999999986542 45555 23445689999999 788777776 689999999 567777776
Q ss_pred ecCC----------CCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCeEEEEeC--CCCCCeeEEEEeCCCCEEEEEE--
Q 003459 182 KCHE----------GQIQCIDFHPH-EFLLATGSADRTVKFWDLETFELIGSAG--PETSGVRCLTFNPDGRTLLCGL-- 246 (818)
Q Consensus 182 ~~h~----------~~I~sv~fspd-g~~Lasgs~Dg~I~IwDl~t~~~i~~~~--~~~~~I~sl~fspdg~~Lasgs-- 246 (818)
.... .....++++|+ +.++++...++.|++||..+++.+..+. .+...+..++|+| |..+.+.+
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~ 260 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP 260 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence 4322 23789999998 7888888889999999999899888874 3456789999999 43333321
Q ss_pred ------CCCEEEEEecCCceecccc---ccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCC
Q 003459 247 ------HESLKVFSWEPIRCHDAVD---VGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 247 ------~d~I~Vwd~~~~~~~~~~~---~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
...+.+|+...++....+. ........+.+ ++|.++++...++.|++|+++...
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 1258899988888776652 33344445554 778888888899999999987643
No 177
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=1.5e-14 Score=159.74 Aligned_cols=263 Identities=11% Similarity=0.039 Sum_probs=187.6
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEe----------CCCeEEEEECCCCceEEEecCC------CCCeEEEEEcCCCC
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGG----------EDHKVNLWAIGKPNAILSLSGH------TSGIDSVSFDSSEV 72 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs----------~Dg~V~lWdl~~~~~i~~l~~h------~~~V~~l~fspdg~ 72 (818)
+..+..+..+ .++|+|+ +++++++. .++.|.+||..+.+.+..+... ......++|+|+|+
T Consensus 44 ~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~ 120 (361)
T 2oiz_A 44 LGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK 120 (361)
T ss_dssp EEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS
T ss_pred EEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC
Confidence 4455555554 8999995 55566654 3678999999998888877632 34567899999999
Q ss_pred EEEEEEC--CCeEEEEECCCCeEEEE-EcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCC-CeEEEEE------ec
Q 003459 73 LVAAGAA--SGTIKLWDLEEAKIVRT-LTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRK-KGCIHTY------KG 141 (818)
Q Consensus 73 ~Lasgs~--DG~I~IWDl~t~~~v~~-l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~-~~~i~~l------~~ 141 (818)
+|+++.. ++.|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|++.. ++..... ..
T Consensus 121 ~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 121 FIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp EEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred EEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 9998874 58999999999998887 552 2 23446677876 5788888999999999865 5544221 12
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEecC------C----CCEEEEEEeCCCCEEEEEeC----
Q 003459 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--LLHDFKCH------E----GQIQCIDFHPHEFLLATGSA---- 205 (818)
Q Consensus 142 h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~h------~----~~I~sv~fspdg~~Lasgs~---- 205 (818)
+..++ .+.+++++..++..+.++.|.+||+..+. .+..+... . .....++|+|++..++++..
T Consensus 199 ~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~ 277 (361)
T 2oiz_A 199 KDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGK 277 (361)
T ss_dssp TTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCC
T ss_pred CCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCC
Confidence 22222 33446778788888889999999997543 22222210 1 11123789999887776643
Q ss_pred -------CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCC--ceeccc-cccccceeeee
Q 003459 206 -------DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPI--RCHDAV-DVGWSRLSDLN 275 (818)
Q Consensus 206 -------Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~--~~~~~~-~~~~~~v~~l~ 275 (818)
.+.|.+||+.+++.+..+..+. +.+++|+|||++|+++..+.+.|||..++ +....+ ..+..+.....
T Consensus 278 ~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~ 355 (361)
T 2oiz_A 278 EGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLRTIEGAAEASLQVQF 355 (361)
T ss_dssp TTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred cccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeEEeccCCCCcEEEEe
Confidence 3489999999999999987776 89999999999999887778999999998 777664 44444443333
Q ss_pred ecCC
Q 003459 276 VHEG 279 (818)
Q Consensus 276 ~~~g 279 (818)
.++|
T Consensus 356 ~p~G 359 (361)
T 2oiz_A 356 HPVG 359 (361)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 4444
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.67 E-value=1.2e-14 Score=160.72 Aligned_cols=260 Identities=13% Similarity=0.080 Sum_probs=192.1
Q ss_pred CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEEC----------CCeEEEEECCCCeEEEEEcCC------
Q 003459 37 EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAA----------SGTIKLWDLEEAKIVRTLTGH------ 100 (818)
Q Consensus 37 ~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~----------DG~I~IWDl~t~~~v~~l~~h------ 100 (818)
.|+.|.+||..+++.+..+..+..+ .++|+|+++++++++. ++.|.+||..+++.+..+...
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 3689999999999998888876555 8999999999999863 678999999999988887632
Q ss_pred CCCeEEEEEeCCCCEEEEEEC--CCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCC-C
Q 003459 101 RSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDG-RWVVSGGEDNTVKLWDLTA-G 175 (818)
Q Consensus 101 ~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~i~~-l~~h~~~V~~l~fspdg-~~L~sgs~Dg~I~IwDl~t-~ 175 (818)
......++|+|+|++|+++.. ++.|.+||+.+++.+.. +.. .. ...+.+.|++ ..+++.+.||.+.+|++.. +
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g 184 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDG 184 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTS
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCC
Confidence 245678999999999998874 57999999999988877 542 22 3346677765 6788889999999999865 5
Q ss_pred eEEEEE------ecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe--EEEEeCCC----------CCCeeEEEEeC
Q 003459 176 KLLHDF------KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE--LIGSAGPE----------TSGVRCLTFNP 237 (818)
Q Consensus 176 ~~i~~~------~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~--~i~~~~~~----------~~~I~sl~fsp 237 (818)
+..... ..+..++ .+.+.+++..++..+.++.|.+||+.... .+..+... ......++|+|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 185 KVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred cEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 554222 2222222 33446777777777889999999987543 22221110 11223478999
Q ss_pred CCCEEEEEEC------------CCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCC--Ccee
Q 003459 238 DGRTLLCGLH------------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS--RIEP 303 (818)
Q Consensus 238 dg~~Lasgs~------------d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~--~~~~ 303 (818)
|+..++++.. +.+.+||..+.+....+..+. +......++|++|+++.. +.|.+||..++ ++..
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~ 341 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLR 341 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEE
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeE
Confidence 9988887642 258899999998888887777 555555689999988876 99999999998 5443
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=1.3e-13 Score=148.67 Aligned_cols=247 Identities=10% Similarity=0.041 Sum_probs=178.8
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC----CeE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS----GTI 83 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D----G~I 83 (818)
.+..+..+...+.+++|++ ++++++++..++.|.+||..+++.......+...+.+++|+++++++++...+ +.|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i 114 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGI 114 (333)
T ss_dssp EEEEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred eeEEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence 3456677888899999998 56677888889999999998877665554567789999999999988777666 689
Q ss_pred EEEECCCCeEEEEEc--CCCCCeEEEEEeCCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC
Q 003459 84 KLWDLEEAKIVRTLT--GHRSNCISVDFHPFGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG 155 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~--~h~~~V~sv~fspdg~~Lasgs~------Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg 155 (818)
.+||..++.....+. .+...+.+++++|+|.++++... .+.|+.||..+++... +..+...+..++|+|+|
T Consensus 115 ~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 115 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDE 193 (333)
T ss_dssp EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTS
T ss_pred EEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCC
Confidence 999998877654443 24457899999999987776653 3567777766554433 22233457899999999
Q ss_pred CEEEEE-ECCCeEEEEECCC-CeEEEEE-----ecC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC
Q 003459 156 RWVVSG-GEDNTVKLWDLTA-GKLLHDF-----KCH--EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE 226 (818)
Q Consensus 156 ~~L~sg-s~Dg~I~IwDl~t-~~~i~~~-----~~h--~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~ 226 (818)
++|+.+ ..++.|.+||+.+ +..+..+ ... ...+..++++++|.++++...++.|.+||. .++.+..+...
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~ 272 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIP 272 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECT
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcC
Confidence 866555 4578999999964 3322211 111 136788999999998888888899999998 46666666443
Q ss_pred CC------CeeEEEEeCCCCEEEEEECC-----CEEEEEecC
Q 003459 227 TS------GVRCLTFNPDGRTLLCGLHE-----SLKVFSWEP 257 (818)
Q Consensus 227 ~~------~I~sl~fspdg~~Lasgs~d-----~I~Vwd~~~ 257 (818)
.. .+.+++|++||..|++++.+ ...||.++.
T Consensus 273 ~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 273 GRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp TGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 32 58999999998777755443 345665543
No 180
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.66 E-value=1.1e-13 Score=146.17 Aligned_cols=236 Identities=14% Similarity=0.221 Sum_probs=174.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC------CCCCeEEEEEe-CCCCEEEEEEC-CCcEEEE
Q 003459 57 GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG------HRSNCISVDFH-PFGEFFASGSL-DTNLKIW 128 (818)
Q Consensus 57 ~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~------h~~~V~sv~fs-pdg~~Lasgs~-Dg~I~Iw 128 (818)
++-..+.++++++++.++++...++.|.+||.. ++.+..+.. +...+..+++. +++.++++... ++.|++|
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence 455678999999999988888889999999987 666666642 34578899995 56655555433 7899999
Q ss_pred ECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEeCCCCEEEEEeC
Q 003459 129 DIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATGSA 205 (818)
Q Consensus 129 Dl~~~~~i~~l~~-h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sv~fspdg~~Lasgs~ 205 (818)
| .+++.+..+.. +...+..++++++|+++++...++.|.+||.. ++.+..+. .+...+.+++++++|.++++...
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 183 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR 183 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECC
Confidence 9 56777776643 34568999999999987777778999999964 66666664 34456899999999998888888
Q ss_pred CCeEEEEECCCCeEEEEeCCC--CCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceecccccccc--ceeeee-ecC
Q 003459 206 DRTVKFWDLETFELIGSAGPE--TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWS--RLSDLN-VHE 278 (818)
Q Consensus 206 Dg~I~IwDl~t~~~i~~~~~~--~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~~--~v~~l~-~~~ 278 (818)
++.|++||.. ++.+..+..+ ...+..++++++|+++++...+ .|.+|+.+ ++....+..+.. ....+. .++
T Consensus 184 ~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 184 AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDD 261 (286)
T ss_dssp GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETT
T ss_pred CCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCC
Confidence 9999999974 5566666443 3568999999999888877554 68888843 444444433221 233444 367
Q ss_pred CCEEEEEEcCCeEEEEEecC
Q 003459 279 GKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 279 g~lLatg~~Dg~V~IWdvd~ 298 (818)
|+++++ ..|++|++|++..
T Consensus 262 g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 262 GSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp TEEEEE-ETTTEEEEEECSC
T ss_pred CcEEEE-CCCCeEEEEEccc
Confidence 876666 5799999998754
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.65 E-value=4.1e-14 Score=152.74 Aligned_cols=275 Identities=13% Similarity=0.064 Sum_probs=191.6
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (818)
..|.+++|+++ ...++....++.+..| .++....+..+...+.+++|++++++++++..++.|.+||..+++....
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred cccceeeecCC-ccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 45788899984 4445655778889999 3566777777878889999999999888888899999999998887665
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECC----CcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC------C
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGSLD----TNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGE------D 164 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs~D----g~I~IwDl~~~~~i~~l~--~h~~~V~~l~fspdg~~L~sgs~------D 164 (818)
...+...+.+++|+++|+++++...+ +.|++||..++.....+. .+...+..++++|+|+++++... .
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 54566789999999999887777666 689999998776553433 24457899999999987776653 3
Q ss_pred CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEE-EeCCCeEEEEECCC-CeEEE--------EeCCCCCCeeEEE
Q 003459 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLAT-GSADRTVKFWDLET-FELIG--------SAGPETSGVRCLT 234 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Las-gs~Dg~I~IwDl~t-~~~i~--------~~~~~~~~I~sl~ 234 (818)
+.|..||..+++..... .+...+..++|+|++..|+. .+.++.|.+||+.+ +..+. .+..+ ..+..++
T Consensus 162 ~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp EEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred ceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 56777777655543322 23345789999999986554 45678999999963 32221 11222 4578899
Q ss_pred EeCCCCEEEEEEC-CCEEEEEecCCceecccccccc------ceeeeee-cCCCEEEEEEcCC----eEEEEEecC
Q 003459 235 FNPDGRTLLCGLH-ESLKVFSWEPIRCHDAVDVGWS------RLSDLNV-HEGKLLGCSYNQS----CVGVWVVDI 298 (818)
Q Consensus 235 fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~~~~~~~------~v~~l~~-~~g~lLatg~~Dg----~V~IWdvd~ 298 (818)
++++|+++++... +.|.+|+.+ ++....+..... ....+.+ ++++.|.+++.++ .-.||.++.
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred ECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 9999998777655 468888874 444444433321 2334443 6776666555543 344554443
No 182
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=4.1e-13 Score=157.23 Aligned_cols=275 Identities=16% Similarity=0.150 Sum_probs=203.2
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--CCeEEEEEcCCCCCeE
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE--EAKIVRTLTGHRSNCI 105 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~--t~~~v~~l~~h~~~V~ 105 (818)
++.++++...++.|.+||..+++.+..+... ..+.++.|+|||+++++++.++.|.+||+. +++.+..+... ....
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G-~~P~ 243 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-SEAR 243 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-SEEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC-CCCc
Confidence 4567777888999999999999999888743 457799999999999999999999999995 88888888743 3467
Q ss_pred EEEEe----CCCCEEEEEEC-CCcEEEEECCCCeEEEEEecC--------------------------------------
Q 003459 106 SVDFH----PFGEFFASGSL-DTNLKIWDIRKKGCIHTYKGH-------------------------------------- 142 (818)
Q Consensus 106 sv~fs----pdg~~Lasgs~-Dg~I~IwDl~~~~~i~~l~~h-------------------------------------- 142 (818)
.++|+ |+|+++++++. ++.|.+||..+.+.+..+...
T Consensus 244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~ 323 (567)
T 1qks_A 244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL 323 (567)
T ss_dssp EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence 89999 69998877765 589999999888777665311
Q ss_pred -----------------CCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEec-----CCCCEEEEEEeCC-CC
Q 003459 143 -----------------TRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKLLHDFKC-----HEGQIQCIDFHPH-EF 198 (818)
Q Consensus 143 -----------------~~~V~~l~fspdg~~L~sgs-~Dg~I~IwDl~t~~~i~~~~~-----h~~~I~sv~fspd-g~ 198 (818)
......+.|+|+|++|+++. .++.|.++|+.+++.+..+.. |.+.-..+ ++|+ +.
T Consensus 324 ~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~ 402 (567)
T 1qks_A 324 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGP 402 (567)
T ss_dssp EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEE
T ss_pred EEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCc
Confidence 01223567999999987776 578899999999998877654 33222222 6887 44
Q ss_pred EEEEEe-CCCeEEEEECCC-------CeEEEEeCCCCCCeeEEEEeCCCCEEEEEE--------CCCEEEEEecCC----
Q 003459 199 LLATGS-ADRTVKFWDLET-------FELIGSAGPETSGVRCLTFNPDGRTLLCGL--------HESLKVFSWEPI---- 258 (818)
Q Consensus 199 ~Lasgs-~Dg~I~IwDl~t-------~~~i~~~~~~~~~I~sl~fspdg~~Lasgs--------~d~I~Vwd~~~~---- 258 (818)
+++++. .++.|.++|..+ ++.+..+......-..+.++|++++|.+.. .++|.|||.++.
T Consensus 403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g 482 (567)
T 1qks_A 403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG 482 (567)
T ss_dssp EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccc
Confidence 545554 468999999988 778888766544446688999999999876 247999999876
Q ss_pred -c-eeccccc--------cccceeeee-ecCCCEEEEEE-----cCCeEEEEEecCCCceeee
Q 003459 259 -R-CHDAVDV--------GWSRLSDLN-VHEGKLLGCSY-----NQSCVGVWVVDISRIEPYT 305 (818)
Q Consensus 259 -~-~~~~~~~--------~~~~v~~l~-~~~g~lLatg~-----~Dg~V~IWdvd~~~~~~~~ 305 (818)
. +...+.+ ....+..+. .++|+.+.++. .++.|.|+|..+.++..-+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 483 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 1 2233332 122233333 47888776553 3799999999988876543
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=4.6e-14 Score=169.66 Aligned_cols=242 Identities=9% Similarity=0.036 Sum_probs=176.2
Q ss_pred CCCCEEEEEEeeCCCcEEEEE-eCCC----eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCe-------
Q 003459 15 HSSTVNCLKIGRKSSRVLVTG-GEDH----KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGT------- 82 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatg-s~Dg----~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~------- 82 (818)
|...+..++|+|++. +|+.+ +.+| .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 123 GTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp SCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 444688999999554 55544 3333 8999999998876643322 23678999999999999888766
Q ss_pred ---------EEEEECCCCe----EEEEEcCCCCCeEEEEEeCCCCEEEEEEC-----CCcEEEEECCC------Ce-EEE
Q 003459 83 ---------IKLWDLEEAK----IVRTLTGHRSNCISVDFHPFGEFFASGSL-----DTNLKIWDIRK------KG-CIH 137 (818)
Q Consensus 83 ---------I~IWDl~t~~----~v~~l~~h~~~V~sv~fspdg~~Lasgs~-----Dg~I~IwDl~~------~~-~i~ 137 (818)
|++|++.+++ .+.....|...+..+.|+|+|++|+.++. +..|++||+.+ +. ...
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~ 280 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV 280 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence 9999998875 22222335566889999999999888765 56899999976 43 355
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECCC----eEEEEECCCCe--EEEEEecCCC--CEEEEEEeCCCCEEEEEeCCC--
Q 003459 138 TYKGHTRGVNAIRFTPDGRWVVSGGEDN----TVKLWDLTAGK--LLHDFKCHEG--QIQCIDFHPHEFLLATGSADR-- 207 (818)
Q Consensus 138 ~l~~h~~~V~~l~fspdg~~L~sgs~Dg----~I~IwDl~t~~--~i~~~~~h~~--~I~sv~fspdg~~Lasgs~Dg-- 207 (818)
.+..+...+.. .|+++|+.|+..+..+ .|.+||+.++. ....+..+.. .+..+.|++++.++++...|+
T Consensus 281 ~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~ 359 (710)
T 2xdw_A 281 KLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN 359 (710)
T ss_dssp EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred EeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEE
Confidence 66666666655 5889999888776543 69999998764 2234444433 688899998888889988888
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEE-C----CCEEEEEecCCc
Q 003459 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGL-H----ESLKVFSWEPIR 259 (818)
Q Consensus 208 ~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs-~----d~I~Vwd~~~~~ 259 (818)
.|++||+.+++.+..+..+.+.+..+.++|++..++... . ..+.+||+.+++
T Consensus 360 ~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 467778877887777777777788999999998776442 2 247777776655
No 184
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.63 E-value=2e-13 Score=148.45 Aligned_cols=268 Identities=12% Similarity=0.024 Sum_probs=194.5
Q ss_pred CCCeEEEEECCCCceEEEec------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEe
Q 003459 37 EDHKVNLWAIGKPNAILSLS------GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFH 110 (818)
Q Consensus 37 ~Dg~V~lWdl~~~~~i~~l~------~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fs 110 (818)
.++.|.+||..+++....+. ........+.+. +++++++...++.|.+||..+++.+.++. .......++++
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence 37899999999888665442 122446778875 34455555667999999999999998886 44678899999
Q ss_pred CCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCC-----CCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCeEEEEEe
Q 003459 111 PFGEFFASGS-LDTNLKIWDIRKKGCIHTYKGHT-----RGVNAIRFTPDGRWVVSGG--EDNTVKLWDLTAGKLLHDFK 182 (818)
Q Consensus 111 pdg~~Lasgs-~Dg~I~IwDl~~~~~i~~l~~h~-----~~V~~l~fspdg~~L~sgs--~Dg~I~IwDl~t~~~i~~~~ 182 (818)
+++ .++++. .++.|.+||..+++....+.... .....+++ ++..|+++. .++.|.+||+.+++.+..+.
T Consensus 93 ~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~ 169 (328)
T 3dsm_A 93 SDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELT 169 (328)
T ss_dssp ETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred CCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence 888 555555 78999999999999887776433 14556777 355566665 48899999999999888877
Q ss_pred cCCCCEEEEEEeCCCCEEEEEeCC----------CeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECCCEE
Q 003459 183 CHEGQIQCIDFHPHEFLLATGSAD----------RTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHESLK 251 (818)
Q Consensus 183 ~h~~~I~sv~fspdg~~Lasgs~D----------g~I~IwDl~t~~~i~~~~~~-~~~I~sl~fspdg~~Lasgs~d~I~ 251 (818)
.. .....+.++|+|++++++..+ +.|.+||..+++....+... ......++|+||+++|+++.. .+.
T Consensus 170 ~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~ 247 (328)
T 3dsm_A 170 IG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIW 247 (328)
T ss_dssp CS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEE
T ss_pred cC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEE
Confidence 43 345788999999877776654 78999999999887766432 346899999999999998755 788
Q ss_pred EEEecCCceec--cccccccceeeeee-c-CCCEEEEE----EcCCeEEEEEecCCCceeeeecccce
Q 003459 252 VFSWEPIRCHD--AVDVGWSRLSDLNV-H-EGKLLGCS----YNQSCVGVWVVDISRIEPYTIGSVTR 311 (818)
Q Consensus 252 Vwd~~~~~~~~--~~~~~~~~v~~l~~-~-~g~lLatg----~~Dg~V~IWdvd~~~~~~~~~~~~~~ 311 (818)
+||..+.+... .+.........+.+ + ++.++++. ..++.|.+|+.+...+..+..+..+.
T Consensus 248 ~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~~~i~~G~~P~ 315 (328)
T 3dsm_A 248 RMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPG 315 (328)
T ss_dssp EEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEEEEEEEEESEE
T ss_pred EEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEEEEEEeccCcc
Confidence 88887766432 12221233444554 3 56666666 67899999999955566655555443
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=2.3e-13 Score=144.69 Aligned_cols=247 Identities=13% Similarity=0.038 Sum_probs=178.4
Q ss_pred CceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEE
Q 003459 49 PNAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKI 127 (818)
Q Consensus 49 ~~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~I 127 (818)
+..+..+..+.....+++|+++++ +++++..++.|..||..++ ...+..+...+.+++|+++|.++++...++.|.+
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 344455555667789999999998 7778888999999999887 5666667788999999999998777766789999
Q ss_pred EECCCCeEEEEEecC----CCCeEEEEEcCCCCEEEEE----E-------------CCCeEEEEECCCCeEEEEEecCCC
Q 003459 128 WDIRKKGCIHTYKGH----TRGVNAIRFTPDGRWVVSG----G-------------EDNTVKLWDLTAGKLLHDFKCHEG 186 (818)
Q Consensus 128 wDl~~~~~i~~l~~h----~~~V~~l~fspdg~~L~sg----s-------------~Dg~I~IwDl~t~~~i~~~~~h~~ 186 (818)
||..+++........ ...+..++++|+|+++++. + ..+.|..||.. ++. ..+..+..
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~ 172 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRV 172 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCS
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCC
Confidence 999877754433221 2346689999999988873 2 13467777765 543 34444566
Q ss_pred CEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCeE---EEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceec
Q 003459 187 QIQCIDFHPHEFLLATGSADRTVKFWDLE-TFEL---IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHD 262 (818)
Q Consensus 187 ~I~sv~fspdg~~Lasgs~Dg~I~IwDl~-t~~~---i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~ 262 (818)
....++|+|++.+|++.+.++.|++||+. +++. ...+..+...+.+++++++|+++++. .++|.+|+.+ ++...
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g~~~~ 250 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-GDELG 250 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-SCEEE
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-CCEEE
Confidence 78999999999988777788999999987 5554 23333345567889999999977766 7789999876 55555
Q ss_pred cccccccceeeeee--cCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 263 AVDVGWSRLSDLNV--HEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 263 ~~~~~~~~v~~l~~--~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
.+..... +..+.+ ++++.|.+++.+ .+.-++..+.+++.
T Consensus 251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLEH 291 (296)
T ss_dssp EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCCC
T ss_pred EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccccc
Confidence 5555444 444443 678888888776 44445555555543
No 186
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.62 E-value=8.4e-14 Score=148.18 Aligned_cols=214 Identities=13% Similarity=0.108 Sum_probs=178.3
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCC-CCCeEE
Q 003459 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH-RSNCIS 106 (818)
Q Consensus 29 ~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~-~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h-~~~V~s 106 (818)
+++|++++.|+.|.+||..+++.+..+..+. ..+.++.+.|+|++|+ +.++.|..||. +++.+..+..+ ...+.+
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 5789999999999999999999999998776 5789999999999888 45788999999 89999998865 357889
Q ss_pred EEEeCCCCEEEEEEC-CCcEEEEECCCCeEEEEEec------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 107 VDFHPFGEFFASGSL-DTNLKIWDIRKKGCIHTYKG------HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLH 179 (818)
Q Consensus 107 v~fspdg~~Lasgs~-Dg~I~IwDl~~~~~i~~l~~------h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~ 179 (818)
+.+.++|+++++.+. ++.|..+|. +++.+..+.. +......+++.++|+++++...++.|.+||.. |+.+.
T Consensus 82 ~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w 159 (276)
T 3no2_A 82 ARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLN 159 (276)
T ss_dssp EEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred cEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEE
Confidence 999999999999887 788888885 6777777652 11234556789999999999999999999998 99999
Q ss_pred EEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCC------CCeeEEEEeCCCCEEEEEECC
Q 003459 180 DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET------SGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 180 ~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~------~~I~sl~fspdg~~Lasgs~d 248 (818)
++... ....++.+.++|.+++++..++.|..||..+++.+..+.... ..+..+...++|.++++...+
T Consensus 160 ~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 160 SVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 99864 455677888999999999988899999999999988875321 236888899999999887543
No 187
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=6.7e-14 Score=151.57 Aligned_cols=220 Identities=10% Similarity=0.127 Sum_probs=156.2
Q ss_pred CCEEEEEEeeCCCcEEEEEeCC---C--eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC-----------
Q 003459 17 STVNCLKIGRKSSRVLVTGGED---H--KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS----------- 80 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~D---g--~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D----------- 80 (818)
..+.+++|+|++. .|+.++.+ + .|.+|++.+++.......+ . +..++|+|+++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~-~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~ 135 (347)
T 2gop_A 59 ENATMPRISPDGK-KIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFED 135 (347)
T ss_dssp ESCEEEEECTTSS-EEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC--------
T ss_pred ccCCCeEECCCCC-EEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEc
Confidence 3578899999554 55555432 3 4778888877765554433 3 9999999999988887642
Q ss_pred ----------------CeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC---------cEEEEECCCCeE
Q 003459 81 ----------------GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT---------NLKIWDIRKKGC 135 (818)
Q Consensus 81 ----------------G~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg---------~I~IwDl~~~~~ 135 (818)
..|++||+.+++.+..+.. . .+..+.|+|+| +++++..++ .|+++| +++.
T Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~ 210 (347)
T 2gop_A 136 DVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE 210 (347)
T ss_dssp -CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE
T ss_pred ccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce
Confidence 5799999999887455554 3 78899999999 777776542 355555 5543
Q ss_pred EEEEecCCCCeEEEEEcCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCEEE-EEEeCCCCEEEEEeCC
Q 003459 136 IHTYKGHTRGVNAIRFTPDGRWVVSGGED--------NTVKLWDLTAGKLLHDFKCHEGQIQC-IDFHPHEFLLATGSAD 206 (818)
Q Consensus 136 i~~l~~h~~~V~~l~fspdg~~L~sgs~D--------g~I~IwDl~t~~~i~~~~~h~~~I~s-v~fspdg~~Lasgs~D 206 (818)
..+..+ ..+..+ +|||++|+.++.+ ..|.+|| +++.......+...+.. +.|+ ++ ++++++.+
T Consensus 211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 344434 445544 9999999887754 3688888 56554444455677886 8999 88 99999999
Q ss_pred CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-C-EEEEEec
Q 003459 207 RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-S-LKVFSWE 256 (818)
Q Consensus 207 g~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~-I~Vwd~~ 256 (818)
+.++|| +.+++..... .+...|.+++|++ .++++++.+ . ..||.++
T Consensus 283 ~~~~l~-~~~g~~~~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 283 GSVNLY-IWDGEIKPIA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TEEEEE-EESSSEEEEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CcEEEE-EcCCceEEEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 999999 8766654444 3467789999999 566665544 4 3888887
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.61 E-value=2.3e-13 Score=163.53 Aligned_cols=273 Identities=12% Similarity=0.063 Sum_probs=182.3
Q ss_pred eCCCcEEEEEeCCC----eEEEEECCCCceEEEec------CCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCC
Q 003459 26 RKSSRVLVTGGEDH----KVNLWAIGKPNAILSLS------GHTSGIDSVSFDSSEVLVAAGAASG-----TIKLWDLEE 90 (818)
Q Consensus 26 p~~~~lLatgs~Dg----~V~lWdl~~~~~i~~l~------~h~~~V~~l~fspdg~~Lasgs~DG-----~I~IWDl~t 90 (818)
|++++++++....+ .+.+.+...++....+. +|...+..++|+|||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 76666555554433 33444444444332222 3444688999999999998776543 899999999
Q ss_pred CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCc----------------EEEEECCCCeE--EEEEe--cCCCCeEEEE
Q 003459 91 AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTN----------------LKIWDIRKKGC--IHTYK--GHTRGVNAIR 150 (818)
Q Consensus 91 ~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~----------------I~IwDl~~~~~--i~~l~--~h~~~V~~l~ 150 (818)
++.+.....+ ..+..++|+|||+.|+.++.++. |++|++.++.. ...+. .|...+..+.
T Consensus 161 g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~ 239 (710)
T 2xdw_A 161 AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAE 239 (710)
T ss_dssp TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEE
T ss_pred CCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEE
Confidence 9877643322 23667999999999999988766 99999987652 22333 3455688999
Q ss_pred EcCCCCEEEEEEC-----CCeEEEEECCC------Ce-EEEEEecCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEEC
Q 003459 151 FTPDGRWVVSGGE-----DNTVKLWDLTA------GK-LLHDFKCHEGQIQCIDFHPHEFLLATGSAD----RTVKFWDL 214 (818)
Q Consensus 151 fspdg~~L~sgs~-----Dg~I~IwDl~t------~~-~i~~~~~h~~~I~sv~fspdg~~Lasgs~D----g~I~IwDl 214 (818)
|+|||++|+.++. +..|++||+.+ +. ....+..+...+.. .|+|+|..|+..+.. +.|.+||+
T Consensus 240 ~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~ 318 (710)
T 2xdw_A 240 LSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDF 318 (710)
T ss_dssp ECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred EcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 9999999988775 56899999986 43 34555556555554 488888877776653 36999999
Q ss_pred CCCeE--EEEeCCCC--CCeeEEEEeCCCCEEEEEECCC---EEEEEecCCceeccccccccceeeeee-cCCCEEEEEE
Q 003459 215 ETFEL--IGSAGPET--SGVRCLTFNPDGRTLLCGLHES---LKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSY 286 (818)
Q Consensus 215 ~t~~~--i~~~~~~~--~~I~sl~fspdg~~Lasgs~d~---I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~ 286 (818)
.++.. ...+..+. ..+..+.|++++.++++...++ |.+|++..++....+..+...+..+.+ ++++.++..+
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ 398 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQF 398 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEE
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEE
Confidence 87641 12232332 3578899997777777776664 455555455554444444334444443 5676665443
Q ss_pred c----CCeEEEEEecCCC
Q 003459 287 N----QSCVGVWVVDISR 300 (818)
Q Consensus 287 ~----Dg~V~IWdvd~~~ 300 (818)
. .+.|++||+.+++
T Consensus 399 ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 399 TSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ECSSCCCEEEEEETTSSS
T ss_pred eCCCCCCEEEEEECCCCc
Confidence 3 4789999998877
No 189
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=8.8e-14 Score=145.06 Aligned_cols=240 Identities=7% Similarity=-0.044 Sum_probs=169.3
Q ss_pred CEEEEEEeeCCCcEEE-EEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003459 18 TVNCLKIGRKSSRVLV-TGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 18 ~V~~lafsp~~~~lLa-tgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (818)
...++++++ ++++++ +...++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||.........
T Consensus 25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 788999998 456666 446788999999765543322223445688999999998665554 88999999876554322
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK 176 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~ 176 (818)
.......+..+++.++|..+++...++.|.+|+..+.............+.+++++++|+.+++...++.|.+||...+.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 22233578999999999877777778899999876554433222333467889999999977776678899999988766
Q ss_pred EEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC-CCEEEEEe
Q 003459 177 LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFSW 255 (818)
Q Consensus 177 ~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd~ 255 (818)
.......+...+.+++++++|.++++...++.|.+||............+...+.+++++++|+++++... +.|.+|++
T Consensus 183 ~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 183 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 54433333467899999999988777777889999998765543322223356899999999986666544 35888877
Q ss_pred cCCc
Q 003459 256 EPIR 259 (818)
Q Consensus 256 ~~~~ 259 (818)
...+
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 6544
No 190
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.58 E-value=5.8e-13 Score=144.86 Aligned_cols=245 Identities=10% Similarity=0.010 Sum_probs=180.4
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (818)
.....+++. +++++++...++.|.+||..+++.+..+.. ......++++++++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 346777774 567777777789999999999999888863 46789999988885444443899999999999998877
Q ss_pred EcCCC-----CCeEEEEEeCCCCEEEEEE--CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECC-----
Q 003459 97 LTGHR-----SNCISVDFHPFGEFFASGS--LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGED----- 164 (818)
Q Consensus 97 l~~h~-----~~V~sv~fspdg~~Lasgs--~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~D----- 164 (818)
+.... .....+++ ++..++++. .++.|.+||+.+++.+..+... .....++++|+|++++++..+
T Consensus 121 i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSP 197 (328)
T ss_dssp EECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCS
T ss_pred EEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCc
Confidence 76433 14556777 355555555 4889999999999988887653 345788999999877766554
Q ss_pred -----CeEEEEECCCCeEEEEEecC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE--eCCCCCCeeEEEEe
Q 003459 165 -----NTVKLWDLTAGKLLHDFKCH-EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS--AGPETSGVRCLTFN 236 (818)
Q Consensus 165 -----g~I~IwDl~t~~~i~~~~~h-~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~--~~~~~~~I~sl~fs 236 (818)
+.|.+||..+++....+... ......++|+|++.+|+++.. .|.+||..+++.... +.........++++
T Consensus 198 ~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd 275 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVN 275 (328)
T ss_dssp SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence 78999999999888777642 236799999999998888754 899999998876421 11113568999999
Q ss_pred CCCCEEEEEE------CCCEEEEEecCCceeccccccccc
Q 003459 237 PDGRTLLCGL------HESLKVFSWEPIRCHDAVDVGWSR 270 (818)
Q Consensus 237 pdg~~Lasgs------~d~I~Vwd~~~~~~~~~~~~~~~~ 270 (818)
|++..|+++. .+.|.+|+.+ ++....+.++..+
T Consensus 276 p~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P 314 (328)
T 3dsm_A 276 PNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP 314 (328)
T ss_dssp TTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE
T ss_pred CCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc
Confidence 9555555443 2357888876 6666655554443
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.56 E-value=5.4e-13 Score=160.02 Aligned_cols=276 Identities=11% Similarity=0.031 Sum_probs=178.1
Q ss_pred eeCCCcEEEEEeCCC--e--EEEEECCCCceEEEec------CCCCCeEEEEEcCCCCEEEEE-----ECCCeEEEEECC
Q 003459 25 GRKSSRVLVTGGEDH--K--VNLWAIGKPNAILSLS------GHTSGIDSVSFDSSEVLVAAG-----AASGTIKLWDLE 89 (818)
Q Consensus 25 sp~~~~lLatgs~Dg--~--V~lWdl~~~~~i~~l~------~h~~~V~~l~fspdg~~Lasg-----s~DG~I~IWDl~ 89 (818)
+|++++++++....+ . |.+.+...++....+. +|...+..++|+|||++|+.+ +.+..|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 365665555554433 3 4444544444333332 455578999999999999843 345689999999
Q ss_pred CCeEEEEEcCCCCCe--EEEEEeCCCCEEEEEECCCc-------------EEEEECCCCe----EEEEEecCCCCeEEEE
Q 003459 90 EAKIVRTLTGHRSNC--ISVDFHPFGEFFASGSLDTN-------------LKIWDIRKKG----CIHTYKGHTRGVNAIR 150 (818)
Q Consensus 90 t~~~v~~l~~h~~~V--~sv~fspdg~~Lasgs~Dg~-------------I~IwDl~~~~----~i~~l~~h~~~V~~l~ 150 (818)
+++.+. ..+...+ ..++|+|||+.|+.++.|.. |++|++.++. .+.....|...+..+.
T Consensus 156 tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~ 233 (695)
T 2bkl_A 156 SGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD 233 (695)
T ss_dssp TCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred CCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence 988641 1122222 67999999999999988776 9999998775 3333344556789999
Q ss_pred EcCCCCEEEEEECCC----eEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCCCeE---E
Q 003459 151 FTPDGRWVVSGGEDN----TVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS---ADRTVKFWDLETFEL---I 220 (818)
Q Consensus 151 fspdg~~L~sgs~Dg----~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs---~Dg~I~IwDl~t~~~---i 220 (818)
|+|||++|+.++.++ .|++||..+++. ..+..+...+....| ++|.+++.+. .++.|.+||+.+++. .
T Consensus 234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~ 311 (695)
T 2bkl_A 234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWK 311 (695)
T ss_dssp ECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCE
T ss_pred ECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCe
Confidence 999999998887766 688887765543 334445555666666 5555444444 257899999987652 2
Q ss_pred EEeCCC-CCCeeEEEEeCCCCEEEEEECC-CEEEEEecC-Cceecccccc-ccceeeeee-cCCCEEEEEEc----CCeE
Q 003459 221 GSAGPE-TSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP-IRCHDAVDVG-WSRLSDLNV-HEGKLLGCSYN----QSCV 291 (818)
Q Consensus 221 ~~~~~~-~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~-~~~~~~~~~~-~~~v~~l~~-~~g~lLatg~~----Dg~V 291 (818)
..+..+ ...+..++|+ ++.++++...+ ..+||.++. +.....+..+ ...+..+.+ ++++.++..+. .+.|
T Consensus 312 ~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v 390 (695)
T 2bkl_A 312 EIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQI 390 (695)
T ss_dssp EEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred EEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 333333 4457888998 66677766655 467776662 3333333322 222333332 56776664443 4789
Q ss_pred EEEEecCCCceeee
Q 003459 292 GVWVVDISRIEPYT 305 (818)
Q Consensus 292 ~IWdvd~~~~~~~~ 305 (818)
++||+++++...+.
T Consensus 391 ~~~d~~~g~~~~l~ 404 (695)
T 2bkl_A 391 YKTSVSTGKSELWA 404 (695)
T ss_dssp EEEETTTCCEEEEE
T ss_pred EEEECCCCcEEEEe
Confidence 99999988765543
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.55 E-value=1.8e-12 Score=138.05 Aligned_cols=242 Identities=11% Similarity=0.132 Sum_probs=173.1
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEE-------EeCCCeEEEEECCCCceEEEec----CCCCCeEEEEEcCC-CCEEEEEE
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVT-------GGEDHKVNLWAIGKPNAILSLS----GHTSGIDSVSFDSS-EVLVAAGA 78 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLat-------gs~Dg~V~lWdl~~~~~i~~l~----~h~~~V~~l~fspd-g~~Lasgs 78 (818)
.+...-....+++|++ +++++++ +..++.|.+||..+++...... ++...+.+++++++ ++++++ +
T Consensus 12 ~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~ 89 (314)
T 1pjx_A 12 KVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-D 89 (314)
T ss_dssp EEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-E
T ss_pred hhhccCCCccCceECC-CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-E
Confidence 3455556788999997 5677777 5678899999987776543322 24567999999999 665544 4
Q ss_pred CCCeEEEEECCCCeEEEE-EcC----CCCCeEEEEEeCCCCEEEEEECC---------------CcEEEEECCCCeEEEE
Q 003459 79 ASGTIKLWDLEEAKIVRT-LTG----HRSNCISVDFHPFGEFFASGSLD---------------TNLKIWDIRKKGCIHT 138 (818)
Q Consensus 79 ~DG~I~IWDl~t~~~v~~-l~~----h~~~V~sv~fspdg~~Lasgs~D---------------g~I~IwDl~~~~~i~~ 138 (818)
..+.|.+||.. ++.... ... ....+.++++.++|.++++...+ +.|..||.. ++....
T Consensus 90 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~ 167 (314)
T 1pjx_A 90 MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV 167 (314)
T ss_dssp TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence 45579999998 765433 221 12357899999999877766554 568888866 544333
Q ss_pred EecCCCCeEEEEEc----CCCCEEEEEE-CCCeEEEEECC-CCeE-----EEEEecCC-CCEEEEEEeCCCCEEEEEeCC
Q 003459 139 YKGHTRGVNAIRFT----PDGRWVVSGG-EDNTVKLWDLT-AGKL-----LHDFKCHE-GQIQCIDFHPHEFLLATGSAD 206 (818)
Q Consensus 139 l~~h~~~V~~l~fs----pdg~~L~sgs-~Dg~I~IwDl~-t~~~-----i~~~~~h~-~~I~sv~fspdg~~Lasgs~D 206 (818)
..+......++|+ ++|+.|+.+. .++.|.+||+. +++. ...+..+. ..+..++++++|.++++...+
T Consensus 168 -~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 168 -DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp -EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred -ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 2334457889999 9997666554 57899999986 4542 22233333 567899999999988888888
Q ss_pred CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecC
Q 003459 207 RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEP 257 (818)
Q Consensus 207 g~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~ 257 (818)
+.|.+||.++++.+..+..+...+.+++|+++|+.|+++..+ +|..|+.+.
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 999999998777666665566779999999999977777655 677777654
No 193
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=1.8e-13 Score=164.10 Aligned_cols=240 Identities=8% Similarity=-0.029 Sum_probs=166.2
Q ss_pred cCCCCEEEEEEeeCCCcEEEEE----eCCCeEEEEECCCCceEEEecCCCCCe--EEEEEcCCCCEEEEEECCCe-----
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTG----GEDHKVNLWAIGKPNAILSLSGHTSGI--DSVSFDSSEVLVAAGAASGT----- 82 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatg----s~Dg~V~lWdl~~~~~i~~l~~h~~~V--~~l~fspdg~~Lasgs~DG~----- 82 (818)
+|...+.+++|||++..++++. +.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 3555789999999555444333 334689999999887641 1121222 67999999999999988776
Q ss_pred --------EEEEECCCCe----EEEEEcCCCCCeEEEEEeCCCCEEEEEECCC----cEEEEECCCCeEEEEEecCCCCe
Q 003459 83 --------IKLWDLEEAK----IVRTLTGHRSNCISVDFHPFGEFFASGSLDT----NLKIWDIRKKGCIHTYKGHTRGV 146 (818)
Q Consensus 83 --------I~IWDl~t~~----~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg----~I~IwDl~~~~~i~~l~~h~~~V 146 (818)
|++|++.+++ .+.....|...+..+.|+|+|++|+.++.++ .|++||..+++. ..+..+...+
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~ 274 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAK 274 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCC
T ss_pred ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCce
Confidence 9999998875 3333344556788999999999988877666 788887665543 3444455566
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEECCCCeE---EEEEecC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CC
Q 003459 147 NAIRFTPDGRWVVSGGE----DNTVKLWDLTAGKL---LHDFKCH-EGQIQCIDFHPHEFLLATGSADRTVKFWDLE-TF 217 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~----Dg~I~IwDl~t~~~---i~~~~~h-~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~-t~ 217 (818)
....| ++|. |+..+. ++.|.+||+.++.. ...+..+ ...+..+.|+ ++.++++...|+..++|.+. .+
T Consensus 275 ~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 351 (695)
T 2bkl_A 275 YEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKG 351 (695)
T ss_dssp EEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred EEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 66666 5666 554443 57899999987653 3333323 4457888888 77888999999988877654 35
Q ss_pred eEEEEeCCC-CCCeeEEEEeCCCCEEEEEEC-----CCEEEEEecCCc
Q 003459 218 ELIGSAGPE-TSGVRCLTFNPDGRTLLCGLH-----ESLKVFSWEPIR 259 (818)
Q Consensus 218 ~~i~~~~~~-~~~I~sl~fspdg~~Lasgs~-----d~I~Vwd~~~~~ 259 (818)
+.+..+..+ .+.+..+.++|++..++.... ..+.+||+.+++
T Consensus 352 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 352 KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp CEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 555555544 566788889999987774422 247777776654
No 194
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=2.5e-11 Score=134.84 Aligned_cols=272 Identities=6% Similarity=-0.068 Sum_probs=191.4
Q ss_pred EeeCCCcEEEEEeC--CC---eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEEC
Q 003459 24 IGRKSSRVLVTGGE--DH---KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWDL 88 (818)
Q Consensus 24 fsp~~~~lLatgs~--Dg---~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWDl 88 (818)
..| +++++++... .. .|.+||..+++.+..+.....+ .++|+||+++++++. .++.|.+||.
T Consensus 28 ~~~-~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 28 PGA-DGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCC-CCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 345 4455555542 33 8899999999988887754444 999999999999886 3678999999
Q ss_pred CCCeEEEEEcCC-------CCCeEEEEEeCCCCEEEEEEC--CCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCC-CE
Q 003459 89 EEAKIVRTLTGH-------RSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDG-RW 157 (818)
Q Consensus 89 ~t~~~v~~l~~h-------~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~i~~-l~~h~~~V~~l~fspdg-~~ 157 (818)
.+.+.+..+... ......+.|+|+|++|++++. ++.|.++| .+++.+.. +.. .. ++.+.|++ +.
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-~~---~~~~~~~~~~~ 179 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-PT---CYHIHPGAPST 179 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-Cc---eEEEEeCCCce
Confidence 998888776532 123457999999999998874 47899999 99988877 542 22 24455654 45
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEe-----cCCCCE-EEEEEeCCCCEEEEEeCCCeEEEEECCCCe--EEEEeCC----
Q 003459 158 VVSGGEDNTVKLWDLTAGKLLHDFK-----CHEGQI-QCIDFHPHEFLLATGSADRTVKFWDLETFE--LIGSAGP---- 225 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~~-----~h~~~I-~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~--~i~~~~~---- 225 (818)
+++.+.||.+.+||. +++.+.... ....++ ....+.+++..++..+.++.+.+.|+.... .+..+..
T Consensus 180 ~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~ 258 (373)
T 2mad_H 180 FYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc
Confidence 667778999999999 887764322 111221 234566665554444578899999997543 2222211
Q ss_pred ------CCCCeeEEEEeCCCCEEEEEEC-----------CCEEEEEecCCceeccccccccceeeeeecCCC-EEEEEE-
Q 003459 226 ------ETSGVRCLTFNPDGRTLLCGLH-----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK-LLGCSY- 286 (818)
Q Consensus 226 ------~~~~I~sl~fspdg~~Lasgs~-----------d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~-lLatg~- 286 (818)
.......+.+++|++.++++.. +.+.++|..+.+....+..+..+......++|+ +++++.
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~ 338 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSA 338 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcC
Confidence 0123445889999998887643 358888988888877777766555556668898 677666
Q ss_pred cCCeEEEEEecCCCceee
Q 003459 287 NQSCVGVWVVDISRIEPY 304 (818)
Q Consensus 287 ~Dg~V~IWdvd~~~~~~~ 304 (818)
.++.|.+||+.+.++...
T Consensus 339 ~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 339 GTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred CCCeEEEEECCCCCEEee
Confidence 589999999999987764
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.53 E-value=9.1e-13 Score=137.30 Aligned_cols=238 Identities=7% Similarity=-0.043 Sum_probs=165.7
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 003459 61 GIDSVSFDSSEVLVA-AGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139 (818)
Q Consensus 61 ~V~~l~fspdg~~La-sgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l 139 (818)
...++++++++++++ +...++.|.+||..++........+...+.++++.++|.++++.. ++.|++||....... .+
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~-~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT-VL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-EC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-ee
Confidence 678999999999776 446789999999766543322223345678899999998655554 889999998765433 33
Q ss_pred e-cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 003459 140 K-GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (818)
Q Consensus 140 ~-~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~ 218 (818)
. .....+..++++++|+.+++...++.|.+||..+.............+.+++++++|.++++...++.|.+||.....
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 182 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence 2 233568999999999977777778899999876554433222233467889999999977777778899999998776
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEE-CCCEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEe
Q 003459 219 LIGSAGPETSGVRCLTFNPDGRTLLCGL-HESLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 219 ~i~~~~~~~~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdv 296 (818)
...........+.+++++++|.++++.. .+.|.+|+.+..........+......+.+ ++|+++++...++.|++|++
T Consensus 183 ~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~ 262 (270)
T 1rwi_B 183 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 262 (270)
T ss_dssp EEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred eEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcC
Confidence 5544333336689999999996666554 346888887655433322222233444544 67888888889999999988
Q ss_pred cCCC
Q 003459 297 DISR 300 (818)
Q Consensus 297 d~~~ 300 (818)
+..+
T Consensus 263 ~~~~ 266 (270)
T 1rwi_B 263 LEHH 266 (270)
T ss_dssp CGGG
T ss_pred CCcc
Confidence 7655
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.52 E-value=7.2e-11 Score=124.13 Aligned_cols=274 Identities=8% Similarity=-0.006 Sum_probs=185.5
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE-EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~-~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (818)
.....+.++++.+ +++++++...++.|.+|+.. ++... .+..+...+.++++++++.++++...++.|..||.. ++
T Consensus 17 ~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 17 IPDSGPYGITSSE-DGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp STTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCcceeeECC-CCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 4556899999998 56677766678999999987 54433 223344679999999999887776667899999988 65
Q ss_pred EEEE-EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEE-EEecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 93 IVRT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (818)
Q Consensus 93 ~v~~-l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~-~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~Iw 170 (818)
.... +......+.++++.++|.++++...++.|..||.. ++... .+......+..+++.++|+.+++...++.|..|
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 172 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRI 172 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEE
Confidence 5322 22244678999999999887777668899999987 55442 223345678999999999966666567899999
Q ss_pred ECCCCeEEEE-EecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE-eCCCCCCeeEEEEeCCCCEEEEEEC-
Q 003459 171 DLTAGKLLHD-FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCGLH- 247 (818)
Q Consensus 171 Dl~t~~~i~~-~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~-~~~~~~~I~sl~fspdg~~Lasgs~- 247 (818)
|. +++.... ...+...+.++++.++|.++++....+.|.+||. +++.... .......+.+++++++|+++++...
T Consensus 173 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 250 (300)
T 2qc5_A 173 TN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGA 250 (300)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTT
T ss_pred CC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCC
Confidence 98 5554432 1223456899999999988777777788999998 5554433 3334566899999999986655533
Q ss_pred CCEEEEEecCCceecc-ccccccceeeeee-cCCCEEEEEEcCCeEEEEEe
Q 003459 248 ESLKVFSWEPIRCHDA-VDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 248 d~I~Vwd~~~~~~~~~-~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdv 296 (818)
+.|..|+.+ ++.... +.........+.. ++|.+.++.. . .|..++.
T Consensus 251 ~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 251 NQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 467777763 222211 1111222333443 5666555444 3 5555543
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.52 E-value=3.4e-11 Score=126.61 Aligned_cols=238 Identities=10% Similarity=-0.013 Sum_probs=172.2
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-EEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-ILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~-i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (818)
.+...+.++++.+ ++.++++...++.|..|+.. ++. ...+......+.++++++++.++++...++.|.+||. +++
T Consensus 54 ~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~ 130 (299)
T 2z2n_A 54 TPDAKVMCLTISS-DGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK 130 (299)
T ss_dssp STTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC
T ss_pred cccCceeeEEECC-CCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC
Confidence 3457799999998 56677776668899999975 332 2222234567899999999988887777889999998 555
Q ss_pred EEEE-EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 93 IVRT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLW 170 (818)
Q Consensus 93 ~v~~-l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~-l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~Iw 170 (818)
.... ...+...+..+++.++|..+++...++.|..||. +++.... ...+...+..+++.++|+.+++...++.|.+|
T Consensus 131 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 209 (299)
T 2z2n_A 131 IREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209 (299)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred EEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence 4433 2334567899999999987777766789999998 6655432 23345568899999999977666668899999
Q ss_pred ECCCCeEEEE-EecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE-eCCCCCCeeEEEEeCCCCEEEEEECC
Q 003459 171 DLTAGKLLHD-FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 171 Dl~t~~~i~~-~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~-~~~~~~~I~sl~fspdg~~Lasgs~d 248 (818)
|. +++.... ...+...+.+++++++|.++++...++.|..||. +++.... ...+...+.++++ ++|.++++...+
T Consensus 210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~ 286 (299)
T 2z2n_A 210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECD 286 (299)
T ss_dssp CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTT
T ss_pred CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCC
Confidence 99 6664332 2224467899999999987776667889999998 4543322 2334467899999 899887776666
Q ss_pred CEEEEEecCC
Q 003459 249 SLKVFSWEPI 258 (818)
Q Consensus 249 ~I~Vwd~~~~ 258 (818)
++..++.+..
T Consensus 287 ~l~~~~~~~~ 296 (299)
T 2z2n_A 287 KIGKLTLIKD 296 (299)
T ss_dssp EEEEEEEC--
T ss_pred cEEEEEcCcc
Confidence 7777776654
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.49 E-value=6.2e-12 Score=133.71 Aligned_cols=222 Identities=17% Similarity=0.184 Sum_probs=171.6
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCC-CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-CCeE
Q 003459 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR-SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-RGVN 147 (818)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~-~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~-~~V~ 147 (818)
.+++|++++.++.|.+||.++|+.+..+..+. ..+.++.+.|+|++|+ +.++.|+.||. +++.+..+..+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 45789999999999999999999999998766 4788999999999888 45788999998 899999998753 5788
Q ss_pred EEEEcCCCCEEEEEEC-CCeEEEEECCCCeEEEEEecC------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 003459 148 AIRFTPDGRWVVSGGE-DNTVKLWDLTAGKLLHDFKCH------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (818)
Q Consensus 148 ~l~fspdg~~L~sgs~-Dg~I~IwDl~t~~~i~~~~~h------~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i 220 (818)
++.+.++|+++++.+. ++.|..+|. +|+.+..+... ......+.+.++|.+|++...++.|..||.+ |+.+
T Consensus 81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~ 158 (276)
T 3no2_A 81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL 158 (276)
T ss_dssp EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence 9999999999999887 788888886 78888877631 1234556788999999999999999999998 9999
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEECCC-EEEEEecCCceecccccc---ccc---eee-eeecCCCEEEEEEcC----
Q 003459 221 GSAGPETSGVRCLTFNPDGRTLLCGLHES-LKVFSWEPIRCHDAVDVG---WSR---LSD-LNVHEGKLLGCSYNQ---- 288 (818)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~d~-I~Vwd~~~~~~~~~~~~~---~~~---v~~-l~~~~g~lLatg~~D---- 288 (818)
..+... ..+.++.+.++|.+++++.++. +..||.++++....+... ... ... ...++|.++++.+..
T Consensus 159 w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~ 237 (276)
T 3no2_A 159 NSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDRE 237 (276)
T ss_dssp EEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTT
T ss_pred EEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCcccc
Confidence 888764 4567788899999999887764 777777766665444321 111 222 224788888887532
Q ss_pred ----CeEEEEEec
Q 003459 289 ----SCVGVWVVD 297 (818)
Q Consensus 289 ----g~V~IWdvd 297 (818)
+..+++.++
T Consensus 238 ~~~~~~~~~~~~~ 250 (276)
T 3no2_A 238 AGKGKHPQLVEID 250 (276)
T ss_dssp GGGSCCCSEEEEC
T ss_pred ccccCCceEEEEC
Confidence 234566664
No 199
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.49 E-value=2.2e-11 Score=130.08 Aligned_cols=229 Identities=13% Similarity=0.068 Sum_probs=166.1
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (818)
..+..-..+..|+++++.++++...++.|..||..++.. ..+. +...+.+++|+++++++++ . ++.|.+||..+++
T Consensus 9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~ 84 (297)
T 3g4e_A 9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS 84 (297)
T ss_dssp CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE
T ss_pred ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc
Confidence 344456779999998888888888899999999987665 3333 4567999999999996554 4 5679999998887
Q ss_pred EEEEEcCC----CCCeEEEEEeCCCCEEEEEEC-----------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCE
Q 003459 93 IVRTLTGH----RSNCISVDFHPFGEFFASGSL-----------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRW 157 (818)
Q Consensus 93 ~v~~l~~h----~~~V~sv~fspdg~~Lasgs~-----------Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~ 157 (818)
........ ...+..+++.|+|+++++... .+.|+.+|.. ++. ..+..+......++|+|+++.
T Consensus 85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~-~~~~~~~~~pngi~~spdg~~ 162 (297)
T 3g4e_A 85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHV-KKYFDQVDISNGLDWSLDHKI 162 (297)
T ss_dssp EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCE-EEEEEEESBEEEEEECTTSCE
T ss_pred EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCE-EEEeeccccccceEEcCCCCE
Confidence 64433321 234788999999996665432 2344445543 333 223333445689999999997
Q ss_pred EEEE-ECCCeEEEEEC--CCCeE-----EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCC
Q 003459 158 VVSG-GEDNTVKLWDL--TAGKL-----LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSG 229 (818)
Q Consensus 158 L~sg-s~Dg~I~IwDl--~t~~~-----i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~ 229 (818)
|+.+ +.++.|.+||+ .++.. ...+..+.+....+++.++|.+.++...++.|..||..+++.+..+..+...
T Consensus 163 lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 163 FYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred EEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 7655 45788999987 45543 2223333456789999999988888888889999999999998888777678
Q ss_pred eeEEEEe-CCCCEEEEEEC
Q 003459 230 VRCLTFN-PDGRTLLCGLH 247 (818)
Q Consensus 230 I~sl~fs-pdg~~Lasgs~ 247 (818)
+++++|. ||++.|++++.
T Consensus 243 ~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEEESGGGCEEEEEEB
T ss_pred ceEEEEeCCCCCEEEEEcC
Confidence 9999998 89888876654
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=4.4e-12 Score=153.25 Aligned_cols=239 Identities=7% Similarity=0.044 Sum_probs=162.5
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCC----eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCe----------
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDH----KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGT---------- 82 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg----~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~---------- 82 (818)
..+..++|+|++..++++.+.+| .|++||+.+++.+.... +...+..++|+|| +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~ 240 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALN 240 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCC
Confidence 46889999995554444444334 59999999988765321 2222357899999 98888877654
Q ss_pred ----EEEEECCCCeE--EEEEc--CCCCCeEEEEEeCCCCEEEEEECCC-----cEEEEECCCC--eEEEEEecCCCCeE
Q 003459 83 ----IKLWDLEEAKI--VRTLT--GHRSNCISVDFHPFGEFFASGSLDT-----NLKIWDIRKK--GCIHTYKGHTRGVN 147 (818)
Q Consensus 83 ----I~IWDl~t~~~--v~~l~--~h~~~V~sv~fspdg~~Lasgs~Dg-----~I~IwDl~~~--~~i~~l~~h~~~V~ 147 (818)
|++|++.++.. ...+. .+...+..+.|+|+|++|+..+.++ .|++||+.++ ++...+..+...+.
T Consensus 241 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 320 (741)
T 1yr2_A 241 YNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW 320 (741)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE
T ss_pred CCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE
Confidence 89999987651 22333 3334588999999999988877544 8999999876 31455555555555
Q ss_pred EEEEcCCCCEEEEEECC----CeEEEEECCCC--eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCeEE
Q 003459 148 AIRFTPDGRWVVSGGED----NTVKLWDLTAG--KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE-TFELI 220 (818)
Q Consensus 148 ~l~fspdg~~L~sgs~D----g~I~IwDl~t~--~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~-t~~~i 220 (818)
... +|+|+.|+..+.+ +.|.+||+.++ .....+..+...+..+.|. ++.++++...|+..+||.+. +++.+
T Consensus 321 ~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~ 398 (741)
T 1yr2_A 321 DFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA 398 (741)
T ss_dssp EEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred EEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence 553 4899998888764 45999999874 3333344444556778887 66788888889887776554 45555
Q ss_pred EEeCC-CCCCeeEEEEeCCCCEEEEE--EC---CCEEEEEecCCc
Q 003459 221 GSAGP-ETSGVRCLTFNPDGRTLLCG--LH---ESLKVFSWEPIR 259 (818)
Q Consensus 221 ~~~~~-~~~~I~sl~fspdg~~Lasg--s~---d~I~Vwd~~~~~ 259 (818)
..+.. ..+.+..+.++|++..|+.. +. ..+.+||+.+++
T Consensus 399 ~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 399 GAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 55543 35668889999998866633 22 247777776654
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=1.1e-11 Score=149.83 Aligned_cols=275 Identities=13% Similarity=0.112 Sum_probs=173.7
Q ss_pred eeCCCcEEEEEeCCC--eEEEEE--CC---CCceEEEe------cCCCCCeEEEEEcCCCCEEEEEECC-----CeEEEE
Q 003459 25 GRKSSRVLVTGGEDH--KVNLWA--IG---KPNAILSL------SGHTSGIDSVSFDSSEVLVAAGAAS-----GTIKLW 86 (818)
Q Consensus 25 sp~~~~lLatgs~Dg--~V~lWd--l~---~~~~i~~l------~~h~~~V~~l~fspdg~~Lasgs~D-----G~I~IW 86 (818)
.|+++.++++....+ .-.+|. .. .++....+ .+|...+..++|+|||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 376666555554444 245554 33 33333222 2233468899999999999887654 469999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCc--------------EEEEECCCCeE--EEEEe--cCCCCeEE
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTN--------------LKIWDIRKKGC--IHTYK--GHTRGVNA 148 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~--------------I~IwDl~~~~~--i~~l~--~h~~~V~~ 148 (818)
|+.+++.+.... +...+..++|+|| +.|+.+..++. |++|++.++.. ...+. .+...+..
T Consensus 195 dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~ 272 (741)
T 1yr2_A 195 GVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG 272 (741)
T ss_dssp ETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred ECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence 999998765421 2222357899999 98888887654 99999977652 22333 33345889
Q ss_pred EEEcCCCCEEEEEECCC-----eEEEEECCCC--eEEEEEecCCCCEEEEEEeCCCCEEEEEeCC----CeEEEEECCCC
Q 003459 149 IRFTPDGRWVVSGGEDN-----TVKLWDLTAG--KLLHDFKCHEGQIQCIDFHPHEFLLATGSAD----RTVKFWDLETF 217 (818)
Q Consensus 149 l~fspdg~~L~sgs~Dg-----~I~IwDl~t~--~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D----g~I~IwDl~t~ 217 (818)
+.|+|||++|+..+.++ .|++||+.++ +....+..+...+.... .|+|..|+..+.+ +.|.+||+.++
T Consensus 273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 99999999998887554 8999999877 31444554555555553 4888888877753 45999999885
Q ss_pred --eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEec-CCceecccccc-ccceeeeee-cCCCEEEEEEc----
Q 003459 218 --ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWE-PIRCHDAVDVG-WSRLSDLNV-HEGKLLGCSYN---- 287 (818)
Q Consensus 218 --~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~-~~~~~~~~~~~-~~~v~~l~~-~~g~lLatg~~---- 287 (818)
+....+..+...+..+.|+ ++.++++...+ ..+||.++ .+.....+... ...+..+.+ ++++.|+..+.
T Consensus 352 ~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~ 430 (741)
T 1yr2_A 352 TPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ 430 (741)
T ss_dssp SCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTE
T ss_pred ccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCC
Confidence 3344444444556778887 55566666555 46677665 23333333332 333444433 56665553332
Q ss_pred CCeEEEEEecCCCcee
Q 003459 288 QSCVGVWVVDISRIEP 303 (818)
Q Consensus 288 Dg~V~IWdvd~~~~~~ 303 (818)
.+.|++||+++++...
T Consensus 431 P~~i~~~d~~tg~~~~ 446 (741)
T 1yr2_A 431 PATVLALDPATAKTTP 446 (741)
T ss_dssp EEEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCcEEE
Confidence 4789999998876443
No 202
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.45 E-value=6.3e-11 Score=138.67 Aligned_cols=247 Identities=17% Similarity=0.193 Sum_probs=180.0
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECC--CCceEEEecCCCCCeEEEEEc----CCCCEEEEEEC-CCeEEEEEC
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIG--KPNAILSLSGHTSGIDSVSFD----SSEVLVAAGAA-SGTIKLWDL 88 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~--~~~~i~~l~~h~~~V~~l~fs----pdg~~Lasgs~-DG~I~IWDl 88 (818)
...+.+++|+| +++++++++.|+.|.+||+. +++.+..+.... ....++|+ |+|+++++++. +++|.+||.
T Consensus 196 g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~ 273 (567)
T 1qks_A 196 GYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG 273 (567)
T ss_dssp SSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEET
T ss_pred CCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEEC
Confidence 34677999999 56678888899999999995 788888877533 46799999 69998887765 599999999
Q ss_pred CCCeEEEEEcCC----------C---------------------------------------------CCeEEEEEeCCC
Q 003459 89 EEAKIVRTLTGH----------R---------------------------------------------SNCISVDFHPFG 113 (818)
Q Consensus 89 ~t~~~v~~l~~h----------~---------------------------------------------~~V~sv~fspdg 113 (818)
.+.+.+..+... . ....++.|+|+|
T Consensus 274 ~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdg 353 (567)
T 1qks_A 274 ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 353 (567)
T ss_dssp TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTS
T ss_pred CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCC
Confidence 888877665411 0 012356799999
Q ss_pred CEEEEEE-CCCcEEEEECCCCeEEEEEec-----CCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCC-------CeEE
Q 003459 114 EFFASGS-LDTNLKIWDIRKKGCIHTYKG-----HTRGVNAIRFTPDGRWVVSGG--EDNTVKLWDLTA-------GKLL 178 (818)
Q Consensus 114 ~~Lasgs-~Dg~I~IwDl~~~~~i~~l~~-----h~~~V~~l~fspdg~~L~sgs--~Dg~I~IwDl~t-------~~~i 178 (818)
++|++++ .++.|.+||+.+++.+..+.. |.+.-..+ ++|++..+++.+ .++.|.++|..+ .+.+
T Consensus 354 r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 354 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEE
Confidence 9887766 578999999999988777654 33222222 688755555443 468999999988 6788
Q ss_pred EEEecCCCCEEEEEEeCCCCEEEEEeC-------CCeEEEEECCCC-----e-EEEEeC--------CCCCCeeEEEEeC
Q 003459 179 HDFKCHEGQIQCIDFHPHEFLLATGSA-------DRTVKFWDLETF-----E-LIGSAG--------PETSGVRCLTFNP 237 (818)
Q Consensus 179 ~~~~~h~~~I~sv~fspdg~~Lasgs~-------Dg~I~IwDl~t~-----~-~i~~~~--------~~~~~I~sl~fsp 237 (818)
..+......-..+.++|++++|++... ...|.+||+.+. . .+..+. .....+..+.|++
T Consensus 433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 888754333345778999999998763 359999999877 2 112221 1234688999999
Q ss_pred CCCEEEEEE------CCCEEEEEecCCceecccc
Q 003459 238 DGRTLLCGL------HESLKVFSWEPIRCHDAVD 265 (818)
Q Consensus 238 dg~~Lasgs------~d~I~Vwd~~~~~~~~~~~ 265 (818)
+|+++.++. ++.|.|+|-.+.+....+.
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 999988763 3469999988887766654
No 203
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.45 E-value=1.1e-10 Score=126.75 Aligned_cols=222 Identities=13% Similarity=0.042 Sum_probs=160.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (818)
-..+.+|+|+++.++++...++.|..||..+++.. .+. ....+.+++|+++++++++. .+ .|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 46789999977888888888899999999776543 333 34679999999999877654 44 4999999888764433
Q ss_pred cC---C-CCCeEEEEEeCCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCe
Q 003459 98 TG---H-RSNCISVDFHPFGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNT 166 (818)
Q Consensus 98 ~~---h-~~~V~sv~fspdg~~Lasgs~------Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~ 166 (818)
.. . ...+..+.++|+|+++++... .+.|+.+| +++.. .+..+......++|+|+|+.|+.+. .++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1 235789999999987665432 25666677 45433 3333334578899999999776654 4688
Q ss_pred EEEEECC--CC-e-----EEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEe-C
Q 003459 167 VKLWDLT--AG-K-----LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFN-P 237 (818)
Q Consensus 167 I~IwDl~--t~-~-----~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fs-p 237 (818)
|.+||+. ++ . .+..+.........+++.++|.++++...++.|.+||. +++.+..+..+...+.+++|+ +
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 9999986 55 3 22233323456788999999988877777789999998 577777776666679999998 8
Q ss_pred CCCEEEEEEC
Q 003459 238 DGRTLLCGLH 247 (818)
Q Consensus 238 dg~~Lasgs~ 247 (818)
++..|++++.
T Consensus 282 d~~~L~vt~~ 291 (326)
T 2ghs_A 282 DASRLLVTSA 291 (326)
T ss_dssp TSCEEEEEEB
T ss_pred CCCEEEEEec
Confidence 8887766543
No 204
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.44 E-value=3.4e-11 Score=133.56 Aligned_cols=277 Identities=9% Similarity=-0.007 Sum_probs=195.2
Q ss_pred EEEeeCCCcEEEEEeC----CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEE
Q 003459 22 LKIGRKSSRVLVTGGE----DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWD 87 (818)
Q Consensus 22 lafsp~~~~lLatgs~----Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWD 87 (818)
....|++.+++++-.. ++.|.++|..+++.+..+.....+ . ++++|||+++++++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 4456755554444443 689999999999999988755555 4 99999999888775 367899999
Q ss_pred CCCCeEEEEEcCC-------CCCeEEEEEeCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEE
Q 003459 88 LEEAKIVRTLTGH-------RSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWV 158 (818)
Q Consensus 88 l~t~~~v~~l~~h-------~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L 158 (818)
..+++.+..+.-. ......+.|+|+|++++++.. ++.|.++|+.+++.+.++.... . ...+....+.+
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~ 192 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTF 192 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEE
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCcee
Confidence 9999998887522 124567999999999988874 6899999999999999886422 1 22333345677
Q ss_pred EEEECCCeEEEEECCC-CeEEEEEecC----CCCEE-EEEEe-CCCCEEEEEeCCCeEEEEECCCCe--EEEEeCC----
Q 003459 159 VSGGEDNTVKLWDLTA-GKLLHDFKCH----EGQIQ-CIDFH-PHEFLLATGSADRTVKFWDLETFE--LIGSAGP---- 225 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t-~~~i~~~~~h----~~~I~-sv~fs-pdg~~Lasgs~Dg~I~IwDl~t~~--~i~~~~~---- 225 (818)
++.+.||.+.+.++.+ ++.......+ ..++. ...|. ++|++++ .+.+|.|+++|+.+.. .+..+..
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~ 271 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEA 271 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccc
Confidence 7888999999999976 6653322111 12221 24564 5776555 5568999999997654 3322210
Q ss_pred ------CCCCeeEEEEeCCCCEEEEEEC-----------CCEEEEEecCCceeccccccccceeeeeecCCC-EEEEE-E
Q 003459 226 ------ETSGVRCLTFNPDGRTLLCGLH-----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK-LLGCS-Y 286 (818)
Q Consensus 226 ------~~~~I~sl~fspdg~~Lasgs~-----------d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~-lLatg-~ 286 (818)
.......++++++++.+++... +.+.++|..+.+....+.++.........++++ +|.++ .
T Consensus 272 ~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~ 351 (386)
T 3sjl_D 272 ERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALST 351 (386)
T ss_dssp HHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEET
T ss_pred cccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcC
Confidence 1123456788999999988642 247788888888888887776554555568886 66554 5
Q ss_pred cCCeEEEEEecCCCceee
Q 003459 287 NQSCVGVWVVDISRIEPY 304 (818)
Q Consensus 287 ~Dg~V~IWdvd~~~~~~~ 304 (818)
.++.|.++|..+++...-
T Consensus 352 ~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 352 GDKTLYIHDAESGEELRS 369 (386)
T ss_dssp TTTEEEEEETTTCCEEEE
T ss_pred CCCeEEEEECCCCcEEEE
Confidence 589999999999886653
No 205
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.44 E-value=2.8e-11 Score=129.75 Aligned_cols=238 Identities=13% Similarity=0.088 Sum_probs=169.3
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWD 87 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWD 87 (818)
++..+..+.....+.+|+|++..+++++..++.|..|+. +++ ...+..+...+.+++|+++|+++++...++.|.+|+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSD 113 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEEC
Confidence 455666777788999999976668888888999999997 444 345555667899999999999776665668899999
Q ss_pred CCCCeEEEEEcCC----CCCeEEEEEeCCCCEEEE----EEC-------------CCcEEEEECCCCeEEEEEecCCCCe
Q 003459 88 LEEAKIVRTLTGH----RSNCISVDFHPFGEFFAS----GSL-------------DTNLKIWDIRKKGCIHTYKGHTRGV 146 (818)
Q Consensus 88 l~t~~~v~~l~~h----~~~V~sv~fspdg~~Las----gs~-------------Dg~I~IwDl~~~~~i~~l~~h~~~V 146 (818)
.. ++........ ...+..+++.++|.++++ |.. .+.|+.||..+++..... .....
T Consensus 114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 86 6543322211 134678999999998776 332 256888888666544333 33457
Q ss_pred EEEEEcCCCCEEEEEECC------CeEEEEECCCCeEE--EEE-ecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Q 003459 147 NAIRFTPDGRWVVSGGED------NTVKLWDLTAGKLL--HDF-KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF 217 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~D------g~I~IwDl~t~~~i--~~~-~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~ 217 (818)
..++|+||++.|+.+... +.|.+||+..+... ..+ ....+....+++.++|++.++ +.+ .|.+||. .+
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~~-~g 267 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFDS-DG 267 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEECT-TS
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEECC-CC
Confidence 889999999988887765 68999998765411 111 112344567889999985444 444 5999998 46
Q ss_pred eEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEE
Q 003459 218 ELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (818)
Q Consensus 218 ~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (818)
+.+..+.... .+.+++|+++++.|++++.+++..++
T Consensus 268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 6766665544 58999999999999988877654443
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.42 E-value=1.1e-10 Score=131.11 Aligned_cols=234 Identities=9% Similarity=0.044 Sum_probs=164.0
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG--TIKLWDLEEAKIV 94 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG--~I~IWDl~t~~~v 94 (818)
.....|+|++ +++++++...++.|++||..++........... .. ++|+++++.|+++..++ .|.+|+...+...
T Consensus 131 ~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4688999998 567777777789999999987776655554333 33 99999999999988766 7999998766544
Q ss_pred EEE----cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE----EecCCCCe--EEEEEcCC-CCEEEEEEC
Q 003459 95 RTL----TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT----YKGHTRGV--NAIRFTPD-GRWVVSGGE 163 (818)
Q Consensus 95 ~~l----~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~----l~~h~~~V--~~l~fspd-g~~L~sgs~ 163 (818)
..+ ......+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +.++++-..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~ 287 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN 287 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC
Confidence 444 22456678899999666666677788999999987753322 12222222 28999995 555555556
Q ss_pred CCeEEEEECCCCeEEEEEecCC---------------CCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCeEEEEeCC--
Q 003459 164 DNTVKLWDLTAGKLLHDFKCHE---------------GQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFELIGSAGP-- 225 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~h~---------------~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t~~~i~~~~~-- 225 (818)
.+.|+.||.... +..+.++. .....++|+|+|.++++-. .++.|+.||+.++........
T Consensus 288 ~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~ 365 (409)
T 3hrp_A 288 LSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVD 365 (409)
T ss_dssp TTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTT
T ss_pred CCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCC
Confidence 789999997643 33333322 3478999999999888877 889999999888875433221
Q ss_pred ------------CCCCeeEEEEeCCCCEEEEEECC-CEEEEEe
Q 003459 226 ------------ETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW 255 (818)
Q Consensus 226 ------------~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~ 255 (818)
.-.....++++++|.++++...+ .|+.+.+
T Consensus 366 ~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 366 VASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 01357899999997666655444 3555544
No 207
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=2e-11 Score=137.42 Aligned_cols=272 Identities=9% Similarity=0.006 Sum_probs=196.1
Q ss_pred CCcEEEEEeCC----CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCeE
Q 003459 28 SSRVLVTGGED----HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWDLEEAKI 93 (818)
Q Consensus 28 ~~~lLatgs~D----g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWDl~t~~~ 93 (818)
..+++++...+ +.|.++|..+.+.+..+..-..+ .++++||+++|+++. .++.|.++|..+++.
T Consensus 84 ~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v 161 (426)
T 3c75_H 84 ARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP 161 (426)
T ss_dssp TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred CCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence 34444444433 79999999999999988855555 899999999888876 367899999999999
Q ss_pred EEEEcCC-------CCCeEEEEEeCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEEC
Q 003459 94 VRTLTGH-------RSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDG-RWVVSGGE 163 (818)
Q Consensus 94 v~~l~~h-------~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg-~~L~sgs~ 163 (818)
+..+.-. ......+.|+|+|++++++.. ++.|.++|+.+++.+.++.... . ....|++ +.+++.+.
T Consensus 162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~ 237 (426)
T 3c75_H 162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCR 237 (426)
T ss_dssp EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEET
T ss_pred EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcC
Confidence 8887521 123457899999999999874 5789999999999998887422 1 2334433 56677778
Q ss_pred CCeEEEEECCCCeEEEE----EecCCCCE-EEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE--EeCC----------C
Q 003459 164 DNTVKLWDLTAGKLLHD----FKCHEGQI-QCIDFHPHEFLLATGSADRTVKFWDLETFELIG--SAGP----------E 226 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~~----~~~h~~~I-~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~--~~~~----------~ 226 (818)
||.+.+.++.+++.... +.....++ ..+.|.+++..++.....+.|.+.|+....... .+.. .
T Consensus 238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~ 317 (426)
T 3c75_H 238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWR 317 (426)
T ss_dssp TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence 88888888866655532 21111221 235678888877777888999999987654321 1110 0
Q ss_pred CCCeeEEEEeCCCCEEEEEEC-----------CCEEEEEecCCceeccccccccceeeeeecCCC-EEEEEE-cCCeEEE
Q 003459 227 TSGVRCLTFNPDGRTLLCGLH-----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK-LLGCSY-NQSCVGV 293 (818)
Q Consensus 227 ~~~I~sl~fspdg~~Lasgs~-----------d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~-lLatg~-~Dg~V~I 293 (818)
......+.|++||..+++... +.+.++|..+.+....+.++..+......++|+ ++++.. .++.|.+
T Consensus 318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsV 397 (426)
T 3c75_H 318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHI 397 (426)
T ss_dssp ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEE
Confidence 112234789999998887642 358999999999888887776666666678898 787777 5999999
Q ss_pred EEecCCCceeee
Q 003459 294 WVVDISRIEPYT 305 (818)
Q Consensus 294 Wdvd~~~~~~~~ 305 (818)
+|+.+.++...+
T Consensus 398 ID~~t~kvv~tI 409 (426)
T 3c75_H 398 YDAATGEELRSV 409 (426)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEEEe
Confidence 999999977643
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.42 E-value=4.9e-10 Score=124.37 Aligned_cols=251 Identities=10% Similarity=-0.030 Sum_probs=172.5
Q ss_pred EEEEecCCCCEEEEEEeeCCCcEEEEEe----------CCCeEEEEECCCCceEEEecCC-------CCCeEEEEEcCCC
Q 003459 9 LQEFVAHSSTVNCLKIGRKSSRVLVTGG----------EDHKVNLWAIGKPNAILSLSGH-------TSGIDSVSFDSSE 71 (818)
Q Consensus 9 l~~~~~H~~~V~~lafsp~~~~lLatgs----------~Dg~V~lWdl~~~~~i~~l~~h-------~~~V~~l~fspdg 71 (818)
+..+.....+ .++|+|++. +++++. .++.|.+||..+.+.+..+... ......+.|+|||
T Consensus 60 ~~~i~~g~~p--~i~~spDg~-~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG 136 (373)
T 2mad_H 60 LGHVNGGFLP--NPVAAHSGS-EFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN 136 (373)
T ss_pred EEEecCCCCC--CeEECCCCC-EEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCC
Confidence 3444433333 899999555 455543 3678999999988887766432 1234589999999
Q ss_pred CEEEEEEC--CCeEEEEECCCCeEEEE-EcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEe-----cC
Q 003459 72 VLVAAGAA--SGTIKLWDLEEAKIVRT-LTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYK-----GH 142 (818)
Q Consensus 72 ~~Lasgs~--DG~I~IWDl~t~~~v~~-l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l~-----~h 142 (818)
++|+++.. ++.|.++| .+++.+.. +... . ++.+.|++ ..+++.+.||.+.+||. +++...... ..
T Consensus 137 ~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~ 210 (373)
T 2mad_H 137 ADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTA 210 (373)
T ss_pred CEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccC
Confidence 99998874 57899999 99998887 6522 2 24455655 35667778999999999 777664322 11
Q ss_pred CCC-eEEEEEcCCCCEEEEEECCCeEEEEECCCCe--EEEEEec----------CCCCEEEEEEeCCCCEEEEEeC----
Q 003459 143 TRG-VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGK--LLHDFKC----------HEGQIQCIDFHPHEFLLATGSA---- 205 (818)
Q Consensus 143 ~~~-V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~----------h~~~I~sv~fspdg~~Lasgs~---- 205 (818)
..+ .....|.+++..++..+.++.+.+.|+..+. .+..+.. .......+.++|++..++++..
T Consensus 211 ~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~ 290 (373)
T 2mad_H 211 AQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA 290 (373)
T ss_pred CcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc
Confidence 122 1234566766655555578899999997552 2333321 1223445788999888777653
Q ss_pred ------CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC-EEEEEE--CCCEEEEEecCCceecc-cccccc
Q 003459 206 ------DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGL--HESLKVFSWEPIRCHDA-VDVGWS 269 (818)
Q Consensus 206 ------Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~-~Lasgs--~d~I~Vwd~~~~~~~~~-~~~~~~ 269 (818)
.+.|.++|+.+++.+..+.. .....++.|+|||+ .++++. ++.+.|||..+.+.... ..++..
T Consensus 291 ~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~ 363 (373)
T 2mad_H 291 WKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSG 363 (373)
T ss_pred ccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCC
Confidence 35899999999999888853 34579999999999 677665 45799999998887765 344433
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.40 E-value=1e-10 Score=124.41 Aligned_cols=238 Identities=13% Similarity=0.163 Sum_probs=162.6
Q ss_pred CCCCeEEEEEcCCCCEEEE-------EECCCeEEEEECCCCeEEEEEc----CCCCCeEEEEEeCC-CCEEEEEECCCcE
Q 003459 58 HTSGIDSVSFDSSEVLVAA-------GAASGTIKLWDLEEAKIVRTLT----GHRSNCISVDFHPF-GEFFASGSLDTNL 125 (818)
Q Consensus 58 h~~~V~~l~fspdg~~Las-------gs~DG~I~IWDl~t~~~v~~l~----~h~~~V~sv~fspd-g~~Lasgs~Dg~I 125 (818)
.-....+++|++++.++++ +..++.|.+||..+++...... ++...+.+++++++ +. +++++..+.|
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~-l~v~~~~~~l 94 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ-LFVADMRLGL 94 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE-EEEEETTTEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc-EEEEECCCCE
Confidence 3345689999999988877 5678999999988887643322 24467899999999 55 4445455579
Q ss_pred EEEECCCCeEEEE-Eec----CCCCeEEEEEcCCCCEEEEEECC---------------CeEEEEECCCCeEEEEEecCC
Q 003459 126 KIWDIRKKGCIHT-YKG----HTRGVNAIRFTPDGRWVVSGGED---------------NTVKLWDLTAGKLLHDFKCHE 185 (818)
Q Consensus 126 ~IwDl~~~~~i~~-l~~----h~~~V~~l~fspdg~~L~sgs~D---------------g~I~IwDl~t~~~i~~~~~h~ 185 (818)
.+||.. ++.... ... ....+.+++++++|+++++...+ +.|..||.. ++...... +.
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~ 171 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AF 171 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EE
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-CC
Confidence 999988 664432 221 12347899999999877776554 578888876 55443332 33
Q ss_pred CCEEEEEEe----CCCCEEEEE-eCCCeEEEEECC-CCe-----EEEEeCCCC-CCeeEEEEeCCCCEEEEEEC-CCEEE
Q 003459 186 GQIQCIDFH----PHEFLLATG-SADRTVKFWDLE-TFE-----LIGSAGPET-SGVRCLTFNPDGRTLLCGLH-ESLKV 252 (818)
Q Consensus 186 ~~I~sv~fs----pdg~~Lasg-s~Dg~I~IwDl~-t~~-----~i~~~~~~~-~~I~sl~fspdg~~Lasgs~-d~I~V 252 (818)
.....++|+ |++..|+.+ ..++.|.+||+. +++ ....+..+. ..+..++++++|+++++... ++|.+
T Consensus 172 ~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~ 251 (314)
T 1pjx_A 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEE
Confidence 456889999 999665554 567899999986 444 223333333 55789999999988887654 46888
Q ss_pred EEecCCceeccccccccceeeeee-cCCCEE-EEEEcCCeEEEEEecCC
Q 003459 253 FSWEPIRCHDAVDVGWSRLSDLNV-HEGKLL-GCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 253 wd~~~~~~~~~~~~~~~~v~~l~~-~~g~lL-atg~~Dg~V~IWdvd~~ 299 (818)
|+.++++....+......+..+.+ ++|+.| ++...++.|..|+++..
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 887756555555444344455554 678845 45556688999887653
No 210
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.39 E-value=6.9e-10 Score=116.52 Aligned_cols=233 Identities=10% Similarity=0.025 Sum_probs=165.8
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEE-EecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAIL-SLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~-~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~ 93 (818)
+...+.++++.+ ++.++++...++.|..||.. ++... .+......+.++++.+++.++++...++.|..||.. ++.
T Consensus 60 ~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 136 (300)
T 2qc5_A 60 PDAKVMCLIVSS-LGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI 136 (300)
T ss_dssp TTCCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred CCCcceeEEECC-CCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence 446789999998 56666666667889999987 54432 223344678999999999888777668899999987 665
Q ss_pred EEE-EcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEE-EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 003459 94 VRT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHT-YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWD 171 (818)
Q Consensus 94 v~~-l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~-l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwD 171 (818)
... +......+..+++.++++.+++...++.|..||. +++.... ...+...+..+++.++|+.+++....+.|.+||
T Consensus 137 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~ 215 (300)
T 2qc5_A 137 YEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRIT 215 (300)
T ss_dssp EEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEEC
T ss_pred EEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEc
Confidence 432 3334567899999999996666656788999998 5554432 223445689999999998776666677899999
Q ss_pred CCCCeEEEE-EecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEE-eCCCCCCeeEEEEeCCCCEEEEEECCC
Q 003459 172 LTAGKLLHD-FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGS-AGPETSGVRCLTFNPDGRTLLCGLHES 249 (818)
Q Consensus 172 l~t~~~i~~-~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~-~~~~~~~I~sl~fspdg~~Lasgs~d~ 249 (818)
. +++.... +..+...+.++++.++|.++++...++.|..||. +++.... .......+.++.++++|.++++.. ++
T Consensus 216 ~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~~ 292 (300)
T 2qc5_A 216 T-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-CK 292 (300)
T ss_dssp T-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-SE
T ss_pred C-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-Cc
Confidence 8 5554332 2234566899999999987777666789999998 4544322 333345689999999998666554 34
Q ss_pred EEEEE
Q 003459 250 LKVFS 254 (818)
Q Consensus 250 I~Vwd 254 (818)
+..++
T Consensus 293 i~~~~ 297 (300)
T 2qc5_A 293 IGKLN 297 (300)
T ss_dssp EEEEE
T ss_pred eEEeC
Confidence 44444
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.33 E-value=1.3e-11 Score=137.30 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=135.8
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-----------eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-----------AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~-----------~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
.++.+++++ ...++++|+.++ +.+|++.+.. ..... .+.. |+.++| ++.+|+++ .++.|++|
T Consensus 39 ~~nlLais~-~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISN-SKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEET-TTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcC-CCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 589999999 555788888875 6679864322 11222 3556 999999 89999998 88999999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
|+.+.........|...+.++.+.+. .+++++.||.|.+||+.++.... +...|.|++|+|+| ++.|..||.
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~ 183 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRS 183 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSC
T ss_pred EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCc
Confidence 99876655566667788888877754 38889999999999999877653 34579999999999 788999999
Q ss_pred EEEEECCCCeE--EEEE------e---cCCCCEEEEEEeCCCCEEEEEe
Q 003459 167 VKLWDLTAGKL--LHDF------K---CHEGQIQCIDFHPHEFLLATGS 204 (818)
Q Consensus 167 I~IwDl~t~~~--i~~~------~---~h~~~I~sv~fspdg~~Lasgs 204 (818)
+++|+...+.. ..++ . +|...|.++.|.+++.++++-.
T Consensus 184 i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 184 FQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 99999887775 5556 2 3678899999999998887644
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.31 E-value=7.4e-10 Score=124.42 Aligned_cols=234 Identities=8% Similarity=0.022 Sum_probs=156.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC--cEEEEECCCCeEEE
Q 003459 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--NLKIWDIRKKGCIH 137 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg--~I~IwDl~~~~~i~ 137 (818)
.....++|+++++++++...++.|++||..++........... .. ++|+++++.|+++..++ .|++||...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 3578999999999777777779999999998887666554333 33 99999999999988866 79999987665444
Q ss_pred EE----ecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE----EecCCCCE--EEEEEeCC-CCEEEEEeCC
Q 003459 138 TY----KGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHD----FKCHEGQI--QCIDFHPH-EFLLATGSAD 206 (818)
Q Consensus 138 ~l----~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~----~~~h~~~I--~sv~fspd-g~~Lasgs~D 206 (818)
.+ ......+.+++++|++..|+++..++.|+.||..++..... ..++...- ..++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 21445678899999655666677789999999987753322 11222222 28999995 6666776778
Q ss_pred CeEEEEECCCCeEEEEeCCC--------------CCCeeEEEEeCCCCEEEEEE-CC-CEEEEEecCCceeccccc----
Q 003459 207 RTVKFWDLETFELIGSAGPE--------------TSGVRCLTFNPDGRTLLCGL-HE-SLKVFSWEPIRCHDAVDV---- 266 (818)
Q Consensus 207 g~I~IwDl~t~~~i~~~~~~--------------~~~I~sl~fspdg~~Lasgs-~d-~I~Vwd~~~~~~~~~~~~---- 266 (818)
+.|+.|+.... ........ -.....++|+++|+++++-. .+ .|+.|+...+........
T Consensus 289 ~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~ 367 (409)
T 3hrp_A 289 SSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVA 367 (409)
T ss_dssp TEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCB
T ss_pred CEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCC
Confidence 89999997654 22111110 13478999999999666554 33 477777555543222111
Q ss_pred ----------cccceeeeee-cCCCEEEEEEcCCeEEEEEe
Q 003459 267 ----------GWSRLSDLNV-HEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 267 ----------~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdv 296 (818)
.+.....+.+ ++|.++++-..+++|+.+.+
T Consensus 368 g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 368 SQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp SCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0222333443 45666666667777776665
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=2.3e-11 Score=135.35 Aligned_cols=170 Identities=15% Similarity=0.104 Sum_probs=138.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----------EEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEE
Q 003459 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-----------IVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWD 129 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~-----------~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwD 129 (818)
.+..+++++...++++|+.++ +.+|++.+.. ..... .+.. |..++| ++.+|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 689999999999999999885 6679865332 11222 2556 999999 89999999 789999999
Q ss_pred CCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 003459 130 IRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTV 209 (818)
Q Consensus 130 l~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I 209 (818)
+++.........|...+.++.+.+. .+++++.||.|.+||+.++.... +...|+|++|+|+| ++.|..||.+
T Consensus 113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i 184 (388)
T 1xip_A 113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSF 184 (388)
T ss_dssp SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCE
T ss_pred chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcE
Confidence 9887766677778888988888754 38889999999999999887653 34589999999999 6789999999
Q ss_pred EEEECCCCeE--EEEe------C---CCCCCeeEEEEeCCCCEEEE
Q 003459 210 KFWDLETFEL--IGSA------G---PETSGVRCLTFNPDGRTLLC 244 (818)
Q Consensus 210 ~IwDl~t~~~--i~~~------~---~~~~~I~sl~fspdg~~Las 244 (818)
++|+...++. ...+ . +|...|.++.|.+++.++++
T Consensus 185 ~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 185 QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 9999988775 4455 2 36678999999999998885
No 214
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.30 E-value=4.5e-14 Score=156.62 Aligned_cols=258 Identities=10% Similarity=0.002 Sum_probs=145.6
Q ss_pred CcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCC-eE-E
Q 003459 29 SRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSN-CI-S 106 (818)
Q Consensus 29 ~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~-V~-s 106 (818)
+..+++++.||.|+.||..+++.+..+.. ..+.+..+..++..+++++.||.|+.||..+|+.+..+..+... +. .
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~s 86 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQAS 86 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccC
Confidence 45688899999999999999999988876 55666666677877878889999999999999877666533211 10 0
Q ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCC
Q 003459 107 VDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEG 186 (818)
Q Consensus 107 v~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~ 186 (818)
..+. .+..+++++.++.|+.||..+++.+..+..+. ...++|++..+++++.|+.|+.||.++|+.+..+..+.
T Consensus 87 p~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~- 160 (369)
T 2hz6_A 87 PCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD- 160 (369)
T ss_dssp SCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred ceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence 0111 34577888889999999999999988877554 23556788899999999999999999998877665321
Q ss_pred CEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCe-eEEEEeCCCCEEE---EEECCCEEEEEecCCc
Q 003459 187 QIQCIDFHPHE---FLLATGSADRTVKFWDLETFELIGSAGPETSGV-RCLTFNPDGRTLL---CGLHESLKVFSWEPIR 259 (818)
Q Consensus 187 ~I~sv~fspdg---~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I-~sl~fspdg~~La---sgs~d~I~Vwd~~~~~ 259 (818)
.....+..+. ..+++++.||.|+.||..+++.+...... .++ ....++++|...+ ...++.+..++..+++
T Consensus 161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~-~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~ 238 (369)
T 2hz6_A 161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYA-SPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGE 238 (369)
T ss_dssp -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECS-SCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHH
T ss_pred -ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCC-CceEEEEEecCCceEeccceeecccceeeeehhcCC
Confidence 1222333321 46777889999999999999988877643 344 3344556664321 1112233444443333
Q ss_pred ----eeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecC
Q 003459 260 ----CHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 260 ----~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
....+..... +... ...+..|.++..+|.++.++...
T Consensus 239 ~~~~~~W~~~~~~~-~~sp-~~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 239 VGRITKWKYPFPKE-TEAK-SKLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp HHHHHTSCCCCCCH-HHHH-HHSEEEECBEECSSCEECCEEEE
T ss_pred cccceeeeeccCcc-cccc-ccccceEEEecccCCEEecCccc
Confidence 1111111110 0000 12345677888899998888764
No 215
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.29 E-value=7.6e-10 Score=122.72 Aligned_cols=256 Identities=13% Similarity=0.013 Sum_probs=176.5
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEe---------CCCeEEEEECCCCceEEEecCC-------CCCeEEEEEcCCC
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGG---------EDHKVNLWAIGKPNAILSLSGH-------TSGIDSVSFDSSE 71 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs---------~Dg~V~lWdl~~~~~i~~l~~h-------~~~V~~l~fspdg 71 (818)
.+.++..-..+ .++++|++..++++.. .++.|.+||..+.+.+..+.-. ......++|+|||
T Consensus 71 v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDG 148 (386)
T 3sjl_D 71 VIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDG 148 (386)
T ss_dssp EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTS
T ss_pred EEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCC
Confidence 34455544444 4999996665555542 4678999999999988877522 1245679999999
Q ss_pred CEEEEEEC--CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-CeEEEEEecCC----C
Q 003459 72 VLVAAGAA--SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-KGCIHTYKGHT----R 144 (818)
Q Consensus 72 ~~Lasgs~--DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-~~~i~~l~~h~----~ 144 (818)
++++++.. ++.|.++|+.+++.+.++.... + ...+....+.+++.+.||.+.+.++.. ++.......+. .
T Consensus 149 k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~ 225 (386)
T 3sjl_D 149 KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE 225 (386)
T ss_dssp SEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS
T ss_pred CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccc
Confidence 99998874 6899999999999999986322 2 233433456777888999999999976 55433222111 2
Q ss_pred CeE-EEEEc-CCCCEEEEEECCCeEEEEECCCCe--EEEEEec----------CCCCEEEEEEeCCCCEEEEEeC-----
Q 003459 145 GVN-AIRFT-PDGRWVVSGGEDNTVKLWDLTAGK--LLHDFKC----------HEGQIQCIDFHPHEFLLATGSA----- 205 (818)
Q Consensus 145 ~V~-~l~fs-pdg~~L~sgs~Dg~I~IwDl~t~~--~i~~~~~----------h~~~I~sv~fspdg~~Lasgs~----- 205 (818)
++. ...|. ++|++++ .+.+|.|+++|+..+. .+..+.. ..+....+++++++..++....
T Consensus 226 ~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp CBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred cccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 221 24564 5776555 5668999999997653 3332220 1223345777999887777642
Q ss_pred -----CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC-EEEEEE--CCCEEEEEecCCceeccccccccc
Q 003459 206 -----DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGL--HESLKVFSWEPIRCHDAVDVGWSR 270 (818)
Q Consensus 206 -----Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~-~Lasgs--~d~I~Vwd~~~~~~~~~~~~~~~~ 270 (818)
.+.|.++|+.+++.+..+... ..+.+|.|++|++ +|+++. ++.+.|+|..+++....+.....+
T Consensus 305 ~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p 376 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 376 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSS
T ss_pred ccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCC
Confidence 257999999999999887543 3678999999997 777654 346999999998887776655443
No 216
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.28 E-value=3.8e-10 Score=135.30 Aligned_cols=271 Identities=12% Similarity=0.100 Sum_probs=186.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCC----------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSG----------I-DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~----------V-~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (818)
.+++++.++.|+.+|..+++.+..+..+... + ..+.+ .+..|++++.|+.|..||..+|+.+..+..
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeecC
Confidence 4677777899999999999999988643221 0 11222 356788889999999999999999888764
Q ss_pred C--CCCeEEEEEeC--CCCEEEEEE------CCCcEEEEECCCCeEEEEEecCC--------------------------
Q 003459 100 H--RSNCISVDFHP--FGEFFASGS------LDTNLKIWDIRKKGCIHTYKGHT-------------------------- 143 (818)
Q Consensus 100 h--~~~V~sv~fsp--dg~~Lasgs------~Dg~I~IwDl~~~~~i~~l~~h~-------------------------- 143 (818)
. ......+...| .+..+++++ .+|.|+.||..+++.+..+....
T Consensus 150 ~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~ 229 (689)
T 1yiq_A 150 RADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVE 229 (689)
T ss_dssp CSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHH
T ss_pred cCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeee
Confidence 2 11111111111 134455543 36899999999999998875210
Q ss_pred -----CCeEEEEEcCCCCEEEEEECCCe-------------------EEEEECCCCeEEEEEec--CC-------CCEEE
Q 003459 144 -----RGVNAIRFTPDGRWVVSGGEDNT-------------------VKLWDLTAGKLLHDFKC--HE-------GQIQC 190 (818)
Q Consensus 144 -----~~V~~l~fspdg~~L~sgs~Dg~-------------------I~IwDl~t~~~i~~~~~--h~-------~~I~s 190 (818)
.....++++|++..++.+..++. |..||..+|+.+..++. |. .....
T Consensus 230 ~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l 309 (689)
T 1yiq_A 230 QGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMIL 309 (689)
T ss_dssp HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred cCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEE
Confidence 01125788898889999887764 99999999999998874 21 12222
Q ss_pred EEEeCCCC---EEEEEeCCCeEEEEECCCCeEEEEeCCCC-C--------------------------------------
Q 003459 191 IDFHPHEF---LLATGSADRTVKFWDLETFELIGSAGPET-S-------------------------------------- 228 (818)
Q Consensus 191 v~fspdg~---~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~-~-------------------------------------- 228 (818)
.....+|. .++.++.+|.++++|.++|+++....... .
T Consensus 310 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~ 389 (689)
T 1yiq_A 310 AELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAH 389 (689)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSS
T ss_pred EeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCccccc
Confidence 23333565 78899999999999999999874322110 0
Q ss_pred CeeEEEEeCCCCEEEEEEC----------------------------------------------CCEEEEEecCCceec
Q 003459 229 GVRCLTFNPDGRTLLCGLH----------------------------------------------ESLKVFSWEPIRCHD 262 (818)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~----------------------------------------------d~I~Vwd~~~~~~~~ 262 (818)
.-..++|+|+..++++... +.+..||..+++...
T Consensus 390 ~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W 469 (689)
T 1yiq_A 390 DWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAW 469 (689)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEE
T ss_pred CCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEe
Confidence 0123788998888876521 347788888887765
Q ss_pred cccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 263 AVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 263 ~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
.+..+...........+.++++++.||.+++||.+++++.-
T Consensus 470 ~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 470 EVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp EEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EccCCCCccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 55544433333344577888899999999999999998654
No 217
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.27 E-value=4.5e-10 Score=122.67 Aligned_cols=228 Identities=9% Similarity=0.079 Sum_probs=156.8
Q ss_pred CCEEEEEEeeCCCcEEEEEe--CCCeEEEEECCCCceEEEec-------CCCCCeEEEEEcCCCCEEEEEEC-----CCe
Q 003459 17 STVNCLKIGRKSSRVLVTGG--EDHKVNLWAIGKPNAILSLS-------GHTSGIDSVSFDSSEVLVAAGAA-----SGT 82 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs--~Dg~V~lWdl~~~~~i~~l~-------~h~~~V~~l~fspdg~~Lasgs~-----DG~ 82 (818)
..+..+++++ +++++++.. .++.+.||.+.+++ +..+. .|-..+.+++|+++++++++-.. ++.
T Consensus 17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEECC-CCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 6899999999 567777753 23435556554443 33221 24567999999999886665433 578
Q ss_pred EEEEECCCCeEEEEEcCC------CCCeEEEEEeCCCCEEEEEE----CCCcEEEEECCCCeEEEEEecCC---------
Q 003459 83 IKLWDLEEAKIVRTLTGH------RSNCISVDFHPFGEFFASGS----LDTNLKIWDIRKKGCIHTYKGHT--------- 143 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h------~~~V~sv~fspdg~~Lasgs----~Dg~I~IwDl~~~~~i~~l~~h~--------- 143 (818)
|.+||+.+++.+..+... ...+..+++.+++.+++.+. .++.|.+||+.+++....+.+|.
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999999999987776532 23468899998765554443 57899999998887666553321
Q ss_pred --------------------CCeEEEEEcCCCCEEEEEECCC-eEEEEECC---CCe--------EEEEEecCCCCEEEE
Q 003459 144 --------------------RGVNAIRFTPDGRWVVSGGEDN-TVKLWDLT---AGK--------LLHDFKCHEGQIQCI 191 (818)
Q Consensus 144 --------------------~~V~~l~fspdg~~L~sgs~Dg-~I~IwDl~---t~~--------~i~~~~~h~~~I~sv 191 (818)
..+..|+|+|+|++|+++..++ .|..++.. .+. .+. ..++.+....+
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgi 253 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGI 253 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCE
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceE
Confidence 2368899999999999888776 55555532 110 011 11233455678
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC-CCCCeeEEEEeCCCCEEEEEEC
Q 003459 192 DFHPHEFLLATGSADRTVKFWDLETFELIGSAGP-ETSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~-~~~~I~sl~fspdg~~Lasgs~ 247 (818)
+++++|.++++...++.|.+||..+++....... ....+.+++|.++|.++++...
T Consensus 254 a~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 254 SIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp EECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECC
T ss_pred EECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCc
Confidence 9999999999988899999999866664433322 2456899999999887776643
No 218
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=6.9e-10 Score=132.79 Aligned_cols=269 Identities=10% Similarity=0.037 Sum_probs=190.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCC-----------eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSG-----------IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~-----------V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (818)
.+++++.++.|..+|..+++.+..+...... ...+++ ++..|++++.|+.|..+|..+|+.+..+..
T Consensus 79 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 156 (677)
T 1kb0_A 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQNT 156 (677)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEET
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeecC
Confidence 4666777899999999999999888643210 112333 456788889999999999999999988875
Q ss_pred C-C----CCeEE-EEEeCCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCC----------------------
Q 003459 100 H-R----SNCIS-VDFHPFGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHTRG---------------------- 145 (818)
Q Consensus 100 h-~----~~V~s-v~fspdg~~Lasgs~------Dg~I~IwDl~~~~~i~~l~~h~~~---------------------- 145 (818)
+ . ..+.. ... .+..+++++. +|.|+.||..+++.+..+......
T Consensus 157 ~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 157 FEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp TTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred CcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 4 2 11211 111 2455665553 689999999999999887643211
Q ss_pred ----------eEEEEEcCCCCEEEEEECCC-------------------eEEEEECCCCeEEEEEec--CC-------CC
Q 003459 146 ----------VNAIRFTPDGRWVVSGGEDN-------------------TVKLWDLTAGKLLHDFKC--HE-------GQ 187 (818)
Q Consensus 146 ----------V~~l~fspdg~~L~sgs~Dg-------------------~I~IwDl~t~~~i~~~~~--h~-------~~ 187 (818)
...++++|++..++.+..++ .|..+|..+|+.+..++. |. ..
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 12578889889999887664 599999999999998874 21 12
Q ss_pred EEEEEEeCCC---CEEEEEeCCCeEEEEECCCCeEEEEeCCCCC-----------Ce-----------------------
Q 003459 188 IQCIDFHPHE---FLLATGSADRTVKFWDLETFELIGSAGPETS-----------GV----------------------- 230 (818)
Q Consensus 188 I~sv~fspdg---~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~-----------~I----------------------- 230 (818)
...+....+| ..|+.++.+|.|+++|.++|+.+..+..... ++
T Consensus 315 p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~ 394 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN 394 (677)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred cEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccC
Confidence 2233444477 6899999999999999999998876532110 01
Q ss_pred -eEEEEeCCCCEEEEEEC--------------------------------------------CCEEEEEecCCceecccc
Q 003459 231 -RCLTFNPDGRTLLCGLH--------------------------------------------ESLKVFSWEPIRCHDAVD 265 (818)
Q Consensus 231 -~sl~fspdg~~Lasgs~--------------------------------------------d~I~Vwd~~~~~~~~~~~ 265 (818)
..++|+|++.++++... +.|..||..+++....+.
T Consensus 395 w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~ 474 (677)
T 1kb0_A 395 WHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE 474 (677)
T ss_dssp SSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE
T ss_pred CCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC
Confidence 15788999888877532 347788888887765555
Q ss_pred ccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 266 VGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 266 ~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
.............+.++++++.||.+++||..++++.-
T Consensus 475 ~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw 512 (677)
T 1kb0_A 475 HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLW 512 (677)
T ss_dssp ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceee
Confidence 44333333344677788888999999999999988654
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.25 E-value=2.7e-10 Score=136.64 Aligned_cols=240 Identities=12% Similarity=0.094 Sum_probs=159.0
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCC----CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC--------
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGED----HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG-------- 81 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~D----g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG-------- 81 (818)
+|...+..++|||++..++++.+.. ..|++||+.+++.+.... +......++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3556788999999655444444333 479999999988654311 11113567899 999999888774
Q ss_pred -----eEEEEECCCCe----EEEEEcC-CCCCeEEEEEeCCCCEEEEEEC----CCcEEEEECCCCe-EEEEEecCCCCe
Q 003459 82 -----TIKLWDLEEAK----IVRTLTG-HRSNCISVDFHPFGEFFASGSL----DTNLKIWDIRKKG-CIHTYKGHTRGV 146 (818)
Q Consensus 82 -----~I~IWDl~t~~----~v~~l~~-h~~~V~sv~fspdg~~Lasgs~----Dg~I~IwDl~~~~-~i~~l~~h~~~V 146 (818)
.|++|++.++. .+..... |...+..+.|+|+|++|+.... ...|++||+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 39999998764 2333333 4456788999999998765443 2589999997763 345566566655
Q ss_pred EEEEEcCCCCEEEEEECC----CeEEEEECCCCeE--EEEEecCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEECCCC
Q 003459 147 NAIRFTPDGRWVVSGGED----NTVKLWDLTAGKL--LHDFKCHEGQIQCIDFHPHEFLLATGSADR---TVKFWDLETF 217 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~D----g~I~IwDl~t~~~--i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg---~I~IwDl~t~ 217 (818)
... |+++|..|+..+.. +.|..||+.++.. ...+..|...+. .|++++..|+....++ .|++||+..+
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 555 66777766655542 5799999987654 344555655554 8899988777665443 6899998855
Q ss_pred eEEEEeC-CCCCCeeEEEEeCCCCEEEEEEC-----CCEEEEEecCCc
Q 003459 218 ELIGSAG-PETSGVRCLTFNPDGRTLLCGLH-----ESLKVFSWEPIR 259 (818)
Q Consensus 218 ~~i~~~~-~~~~~I~sl~fspdg~~Lasgs~-----d~I~Vwd~~~~~ 259 (818)
.. ..+. +..+.+..+.+++++..|+.... ..+..|++.+++
T Consensus 361 ~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 RV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 43 3433 34455777888888877765433 235566655543
No 220
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.25 E-value=4.1e-09 Score=115.83 Aligned_cols=263 Identities=10% Similarity=0.026 Sum_probs=175.6
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCC---------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCC
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGH---------TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR 101 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h---------~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~ 101 (818)
.+++++.++.|..||..+++.+..+... ...+.+.. ..++..+++++.++.|..+|..+|+.+..+....
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~ 133 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG 133 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC
Confidence 5777788899999999999988776642 22232222 2245678888899999999999999887776443
Q ss_pred CCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCe-----EEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 102 SNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGV-----NAIRFTPDGRWVVSGGEDNTVKLWDLTAGK 176 (818)
Q Consensus 102 ~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V-----~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~ 176 (818)
......... +..+++++.++.|+.+|..+++.+..+....... ...... +..+++++.++.|..+|..+|+
T Consensus 134 ~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 134 EALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp CCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCC
T ss_pred ceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCc
Confidence 222222222 4578888899999999999999888876432211 112222 4568888889999999999999
Q ss_pred EEEEEecCCCC----EE---EEEEeC--CCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEEC
Q 003459 177 LLHDFKCHEGQ----IQ---CIDFHP--HEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 177 ~i~~~~~h~~~----I~---sv~fsp--dg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~ 247 (818)
.+..+...... +. .+...| .+..++.++.++.+..+|..+++.+..... .....+... +..|+++..
T Consensus 210 ~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~ 285 (376)
T 3q7m_A 210 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQ 285 (376)
T ss_dssp EEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEEE--TTEEEEEET
T ss_pred EEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceEE--CCEEEEEcC
Confidence 98887632110 00 011111 245777888899999999999998877653 234445443 445555554
Q ss_pred -CCEEEEEecCCceecccc-ccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 248 -ESLKVFSWEPIRCHDAVD-VGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 248 -d~I~Vwd~~~~~~~~~~~-~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
+.+..||..+++...... .....+..... .+..|.++..+|.|.+||..++++..
T Consensus 286 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 286 NDRVMALTIDGGVTLWTQSDLLHRLLTSPVL-YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp TCCEEEEETTTCCEEEEECTTTTSCCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCeEEEEECCCCcEEEeecccCCCcccCCEE-ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 478899988877654433 12222222222 35677788889999999999988654
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.24 E-value=3.2e-10 Score=136.00 Aligned_cols=243 Identities=17% Similarity=0.165 Sum_probs=157.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE-----CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCc-------
Q 003459 57 GHTSGIDSVSFDSSEVLVAAGA-----ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTN------- 124 (818)
Q Consensus 57 ~h~~~V~~l~fspdg~~Lasgs-----~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~------- 124 (818)
+|...+..++|+|||++|+.+. ....|++||+.+++.+.... +......++|+ |++.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 3556788999999999888543 23579999999998655321 11113567899 9999999887743
Q ss_pred ------EEEEECCCCe----EEEEEec-CCCCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCCe-EEEEEecCCCCE
Q 003459 125 ------LKIWDIRKKG----CIHTYKG-HTRGVNAIRFTPDGRWVVSGGE----DNTVKLWDLTAGK-LLHDFKCHEGQI 188 (818)
Q Consensus 125 ------I~IwDl~~~~----~i~~l~~-h~~~V~~l~fspdg~~L~sgs~----Dg~I~IwDl~t~~-~i~~~~~h~~~I 188 (818)
|++|++.+.. ++..... |...+..+.|+|||++|+.... ...|++||+.++. ....+..+....
T Consensus 204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 9999998754 3333333 4456788999999998865543 2489999998763 344555555555
Q ss_pred EEEEEeCCCCEEE-EEeCC---CeEEEEECCCCeE--EEEeCCCCCCeeEEEEeCCCCEEEEEE-CC---CEEEEEecCC
Q 003459 189 QCIDFHPHEFLLA-TGSAD---RTVKFWDLETFEL--IGSAGPETSGVRCLTFNPDGRTLLCGL-HE---SLKVFSWEPI 258 (818)
Q Consensus 189 ~sv~fspdg~~La-sgs~D---g~I~IwDl~t~~~--i~~~~~~~~~I~sl~fspdg~~Lasgs-~d---~I~Vwd~~~~ 258 (818)
... |+++|..|+ ....+ +.|..||+.++.. ...+.++...+. .|++++++|+... .+ .|.+|+++..
T Consensus 284 ~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 284 VSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC
T ss_pred EEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC
Confidence 555 556555544 44433 6899999987653 223444544454 8999999887654 33 3777777644
Q ss_pred ceeccccc-cccceeeeee-cCCCEEEEEEcC----CeEEEEEecCCCceeee
Q 003459 259 RCHDAVDV-GWSRLSDLNV-HEGKLLGCSYNQ----SCVGVWVVDISRIEPYT 305 (818)
Q Consensus 259 ~~~~~~~~-~~~~v~~l~~-~~g~lLatg~~D----g~V~IWdvd~~~~~~~~ 305 (818)
... .+.. ....+..+.. ++++.++..+.+ +.|..||+++++...+.
T Consensus 361 ~~~-~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~ 412 (693)
T 3iuj_A 361 RVR-EVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR 412 (693)
T ss_dssp EEE-EECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred eeE-EeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence 332 2222 1222323332 466666655554 78999998877755433
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=1.6e-09 Score=115.92 Aligned_cols=231 Identities=12% Similarity=0.047 Sum_probs=154.5
Q ss_pred ceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEE
Q 003459 50 NAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIW 128 (818)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~Iw 128 (818)
..+..+........+..|+++++ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~ 112 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRS 112 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEE
Confidence 34444555566778999999998 5666667899999998 455 34455466778999999999976665566789999
Q ss_pred ECCCCeEEEEEecC-----CCCeEEEEEcCCCCEEEE----EEC-------------CCeEEEEECCCCeEEEEEecCCC
Q 003459 129 DIRKKGCIHTYKGH-----TRGVNAIRFTPDGRWVVS----GGE-------------DNTVKLWDLTAGKLLHDFKCHEG 186 (818)
Q Consensus 129 Dl~~~~~i~~l~~h-----~~~V~~l~fspdg~~L~s----gs~-------------Dg~I~IwDl~t~~~i~~~~~h~~ 186 (818)
|.. ++. ..+..+ ...+..++++++|+++++ |.. .+.|+.||..+++..... ...
T Consensus 113 ~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 113 DAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp CTT-SCE-EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred CCC-CCE-EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 986 543 222211 134678999999997776 332 356888888777644333 334
Q ss_pred CEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCeEE--EE-eCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecC
Q 003459 187 QIQCIDFHPHEFLLATGSAD------RTVKFWDLETFELI--GS-AGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 257 (818)
Q Consensus 187 ~I~sv~fspdg~~Lasgs~D------g~I~IwDl~t~~~i--~~-~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~ 257 (818)
....++|+|++..|+.+... +.|++||+...... .. ..........++++++|++.+ +..++|.+|+.+
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~gv~~~~~~- 266 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGTGVCVFDSD- 266 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSSEEEEECTT-
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCCcEEEECCC-
Confidence 56889999999988777665 78999998765411 11 122234457899999999544 446677777764
Q ss_pred Cceeccccccccceeeee-ecCCCEEEEEEcCC
Q 003459 258 IRCHDAVDVGWSRLSDLN-VHEGKLLGCSYNQS 289 (818)
Q Consensus 258 ~~~~~~~~~~~~~v~~l~-~~~g~lLatg~~Dg 289 (818)
++....+..... +..+. .++++.|..+..++
T Consensus 267 g~~~~~~~~~~~-~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 267 GQLLGHIPTPGT-ASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp SCEEEEEECSSC-CCEEEECTTSCEEEEEETTE
T ss_pred CCEEEEEECCCc-eeEEEEeCCCCEEEEEcCCe
Confidence 444444444433 33333 36777887777764
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.22 E-value=7.3e-09 Score=113.80 Aligned_cols=256 Identities=11% Similarity=0.025 Sum_probs=171.2
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCe-----
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNC----- 104 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V----- 104 (818)
..+++++.++.|..+|..+++.+..+............. +..+++++.++.|..+|..+|+.+..+.......
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 357778889999999999999888776543222222222 4477888899999999999999888776432211
Q ss_pred EEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC----eE---EEEEcC--CCCEEEEEECCCeEEEEECCCC
Q 003459 105 ISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG----VN---AIRFTP--DGRWVVSGGEDNTVKLWDLTAG 175 (818)
Q Consensus 105 ~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~----V~---~l~fsp--dg~~L~sgs~Dg~I~IwDl~t~ 175 (818)
...... +..+++++.++.|..+|..+++.+..+...... +. .+...| .+..++.++.++.|..+|..+|
T Consensus 182 ~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG 259 (376)
T 3q7m_A 182 SAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG 259 (376)
T ss_dssp CCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC
T ss_pred CCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC
Confidence 112222 457888888999999999999988877632110 00 011111 3567888888999999999999
Q ss_pred eEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC-CCCeeEEEEeCCCCEEEEEECC-CEEEE
Q 003459 176 KLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE-TSGVRCLTFNPDGRTLLCGLHE-SLKVF 253 (818)
Q Consensus 176 ~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~-~~~I~sl~fspdg~~Lasgs~d-~I~Vw 253 (818)
+.+..... .....+.. ++..|+.++.++.|..||..+++.+...... ...+...... +..|++++.+ .+.+|
T Consensus 260 ~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~ 333 (376)
T 3q7m_A 260 QIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWI 333 (376)
T ss_dssp CEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEE
T ss_pred cEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEE
Confidence 98877653 33444444 3567888888999999999999988776522 2223333333 4566666655 58999
Q ss_pred EecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEE
Q 003459 254 SWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 254 d~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWd 295 (818)
|..+++...........+.......+..|.+++.+|.|+.|+
T Consensus 334 d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 334 NVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred ECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 988888765554422222221222356777888999999886
No 224
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.22 E-value=8.8e-09 Score=109.79 Aligned_cols=225 Identities=10% Similarity=0.089 Sum_probs=149.3
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE
Q 003459 57 GHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC 135 (818)
Q Consensus 57 ~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~ 135 (818)
.+..-..+..|++++. ++++...++.|+.||..+++.. .+. ....+.+++++++|+++++ . ++.|.+||..+++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~ 85 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSA 85 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcE
Confidence 3444567899999654 5556666899999999887653 333 4567999999999995554 4 56799999988765
Q ss_pred EEEEecC----CCCeEEEEEcCCCCEEEEEEC-----------CCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEE
Q 003459 136 IHTYKGH----TRGVNAIRFTPDGRWVVSGGE-----------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLL 200 (818)
Q Consensus 136 i~~l~~h----~~~V~~l~fspdg~~L~sgs~-----------Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~L 200 (818)
....... ...+..++++|+|+++++... .+.|+.+|.. ++... +..+....+.++|+|+++.|
T Consensus 86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spdg~~l 163 (297)
T 3g4e_A 86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLDHKIF 163 (297)
T ss_dssp EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTTSCEE
T ss_pred EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCCCCEE
Confidence 4333221 234788999999996665432 2345555543 33333 22233456899999999866
Q ss_pred E-EEeCCCeEEEEEC--CCCeE-----EEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccce
Q 003459 201 A-TGSADRTVKFWDL--ETFEL-----IGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL 271 (818)
Q Consensus 201 a-sgs~Dg~I~IwDl--~t~~~-----i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v 271 (818)
+ +.+.++.|.+||+ .++.. +..+......+..++++++|++.++...+ .|.+|+.++++....+......+
T Consensus 164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~ 243 (297)
T 3g4e_A 164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKT 243 (297)
T ss_dssp EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBE
T ss_pred EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCc
Confidence 4 4556789999997 45543 22233333567899999999877776554 47788777777777776665445
Q ss_pred eeeee--cCCCEEEEEEc
Q 003459 272 SDLNV--HEGKLLGCSYN 287 (818)
Q Consensus 272 ~~l~~--~~g~lLatg~~ 287 (818)
.++.+ ++++.|.+++.
T Consensus 244 t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 244 TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEESGGGCEEEEEEB
T ss_pred eEEEEeCCCCCEEEEEcC
Confidence 55554 56666554443
No 225
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.19 E-value=1.9e-09 Score=121.39 Aligned_cols=256 Identities=14% Similarity=0.036 Sum_probs=177.7
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEe---------CCCeEEEEECCCCceEEEecCC-------CCCeEEEEEcCC
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGG---------EDHKVNLWAIGKPNAILSLSGH-------TSGIDSVSFDSS 70 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs---------~Dg~V~lWdl~~~~~i~~l~~h-------~~~V~~l~fspd 70 (818)
..+.++..-..+ .++++|++..++++.. .++.|.++|..+.+.+..+.-. ......+.|+||
T Consensus 110 ~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spD 187 (426)
T 3c75_H 110 RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPD 187 (426)
T ss_dssp EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTT
T ss_pred EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCC
Confidence 334445444445 8999997666555542 4678999999999988877521 234567899999
Q ss_pred CCEEEEEEC--CCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEE----ecCC
Q 003459 71 EVLVAAGAA--SGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTY----KGHT 143 (818)
Q Consensus 71 g~~Lasgs~--DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l----~~h~ 143 (818)
|++++++.. ++.|.++|+.+++.+..+.... + ....|++ ..+++.+.||.+.+.+..+++..... ....
T Consensus 188 Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~ 263 (426)
T 3c75_H 188 NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTED 263 (426)
T ss_dssp SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTT
T ss_pred CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCC
Confidence 999999874 5789999999999998887422 1 2333443 56677778888888888666554321 1111
Q ss_pred CCe-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEEec----------CCCCEEEEEEeCCCCEEEEEeC-----
Q 003459 144 RGV-NAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLL--HDFKC----------HEGQIQCIDFHPHEFLLATGSA----- 205 (818)
Q Consensus 144 ~~V-~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i--~~~~~----------h~~~I~sv~fspdg~~Lasgs~----- 205 (818)
.++ ..+.|.+++..++.....+.|.+.|+..+... ..+.. .......++++|++..+++...
T Consensus 264 ~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~g 343 (426)
T 3c75_H 264 ELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEW 343 (426)
T ss_dssp SCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTT
T ss_pred CceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccc
Confidence 121 23567899888888888999999998755422 11110 0111223689999887776642
Q ss_pred -----CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC-EEEEEE--CCCEEEEEecCCceeccc-ccccc
Q 003459 206 -----DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR-TLLCGL--HESLKVFSWEPIRCHDAV-DVGWS 269 (818)
Q Consensus 206 -----Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~-~Lasgs--~d~I~Vwd~~~~~~~~~~-~~~~~ 269 (818)
++.|.++|+.+++.+..+... ....++.|+|||+ ++++.. ++.+.|+|..+.+....+ .++..
T Consensus 344 thk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~~vG~~ 415 (426)
T 3c75_H 344 KHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQLGRG 415 (426)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCSSS
T ss_pred cccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEecCCCCC
Confidence 357999999999999887532 3478999999999 888776 356999999998887665 44444
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.19 E-value=7.5e-10 Score=122.52 Aligned_cols=263 Identities=8% Similarity=-0.019 Sum_probs=181.5
Q ss_pred CcEEEEEeCCC----eEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEE----------CCCeEEEEECCCCeEE
Q 003459 29 SRVLVTGGEDH----KVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGA----------ASGTIKLWDLEEAKIV 94 (818)
Q Consensus 29 ~~lLatgs~Dg----~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs----------~DG~I~IWDl~t~~~v 94 (818)
.+.+++...++ +|.++|..+++.+..+.....+ .+.++||+++++++. .++.|.+||+.+++.+
T Consensus 32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 44555555555 8899999999999998755556 799999999988886 3688999999999999
Q ss_pred EEEcCC-------CCCeEEEEEeCCCCEEEEEEC--CCcEEE--EECCCCeEEEEEecCCCCeEEEEEcCCC-CEEEEEE
Q 003459 95 RTLTGH-------RSNCISVDFHPFGEFFASGSL--DTNLKI--WDIRKKGCIHTYKGHTRGVNAIRFTPDG-RWVVSGG 162 (818)
Q Consensus 95 ~~l~~h-------~~~V~sv~fspdg~~Lasgs~--Dg~I~I--wDl~~~~~i~~l~~h~~~V~~l~fspdg-~~L~sgs 162 (818)
.++... ......+.|+|||++++++.. +..|.+ +|+.+ +..+... +. +.+.|+| ..+++.+
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~ 182 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGS 182 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCC
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEc
Confidence 998633 123567999999999998875 357888 99876 4444321 11 1233444 3455566
Q ss_pred CCCeEEEEECCC-----CeEEE----EEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC--eEEEEeCCC-----
Q 003459 163 EDNTVKLWDLTA-----GKLLH----DFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETF--ELIGSAGPE----- 226 (818)
Q Consensus 163 ~Dg~I~IwDl~t-----~~~i~----~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~--~~i~~~~~~----- 226 (818)
.||.+.+.|+.+ ++... .+.....+. . .+++..++..+. +.|.+.|+... +.+..+...
T Consensus 183 ~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~ 257 (368)
T 1mda_H 183 CPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRK 257 (368)
T ss_dssp CTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred CCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccc
Confidence 788888889886 43321 111122333 3 566655555556 99999999753 233332211
Q ss_pred -----CCCeeEEEEeCCCCEEEEEEC----------CCEEEEEecCCceeccccccccceeeeeecCCC-EEEEEE-cCC
Q 003459 227 -----TSGVRCLTFNPDGRTLLCGLH----------ESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGK-LLGCSY-NQS 289 (818)
Q Consensus 227 -----~~~I~sl~fspdg~~Lasgs~----------d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~-lLatg~-~Dg 289 (818)
......+.|++||+.++++.. +++.+||+.+.+....+..+..+......++|+ ++++.. .++
T Consensus 258 ~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~ 337 (368)
T 1mda_H 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTE 337 (368)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTT
T ss_pred ccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCC
Confidence 011223789999999887532 357799999999888887776555555567887 566666 599
Q ss_pred eEEEEEecCCCceeee
Q 003459 290 CVGVWVVDISRIEPYT 305 (818)
Q Consensus 290 ~V~IWdvd~~~~~~~~ 305 (818)
.|.++|+.+.++...+
T Consensus 338 ~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 338 VLDIYDAASDQDQSSV 353 (368)
T ss_dssp EEEEEESSSCEEEEEC
T ss_pred eEEEEECCCCcEEEEE
Confidence 9999999999876543
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.14 E-value=4.5e-10 Score=120.18 Aligned_cols=267 Identities=9% Similarity=-0.037 Sum_probs=171.2
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (818)
.+.++.+.+ ++. ++.++.+ |..||. +++.+..+...........+. +..|+.++.++.|..+|.. ++....+
T Consensus 61 ~~~~~~~~~-~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~ 132 (330)
T 3hxj_A 61 IECRPSIGK-DGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRF 132 (330)
T ss_dssp EEECCEETT-TTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEE
T ss_pred cccceEEec-CCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEE
Confidence 345566554 343 4555444 888885 555444333222222233333 5567788889999999988 8777776
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (818)
Q Consensus 98 ~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (818)
..+...+.++...+++. ++.++.++.|+.||.. ++.+..+......+.++.+.++|..+ .++ +.|..|| .+++.
T Consensus 133 ~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~ 206 (330)
T 3hxj_A 133 KTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIY-FGS--DKVYAIN-PDGTE 206 (330)
T ss_dssp ECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEE-EES--SSEEEEC-TTSCE
T ss_pred cCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEE-EEe--CEEEEEC-CCCcE
Confidence 65555566677776665 6667788999999998 88777777666667778887777744 444 8899999 77888
Q ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecC
Q 003459 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEP 257 (818)
Q Consensus 178 i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~ 257 (818)
...+......+.++...++|. |..++.++.|..+|. +++.+..+......+..+.+.++|.+.+...++++..|+. .
T Consensus 207 ~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~ 283 (330)
T 3hxj_A 207 KWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-D 283 (330)
T ss_dssp EEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEECT-T
T ss_pred EEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEECC-C
Confidence 877776556688888888875 555667888888884 5666666554444455667776776555444446777774 4
Q ss_pred CceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCc
Q 003459 258 IRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 258 ~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~ 301 (818)
++....+......+..+....+..|..++.+|.+++...+....
T Consensus 284 g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 284 GTEKWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp SCEEEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-----
T ss_pred CcEEEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecccccc
Confidence 44444444444444455553334466688999998887665543
No 228
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.13 E-value=1.9e-10 Score=123.18 Aligned_cols=252 Identities=10% Similarity=0.003 Sum_probs=169.5
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEe
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFH 110 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fs 110 (818)
.++.++.++.|..|| .+++....+..+...+.++...+++. |+.++.+ |..||. +++.+..+...........+.
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~ 106 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF 106 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE
T ss_pred eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE
Confidence 467777888899999 88887766554444566777776765 4444444 888885 555433333222222223333
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEE
Q 003459 111 PFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQC 190 (818)
Q Consensus 111 pdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~s 190 (818)
+..+.+++.++.|+.||.. ++....+..+...+.++...+++. ++.++.++.|..||.. ++.+..+......+.+
T Consensus 107 --~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~ 181 (330)
T 3hxj_A 107 --EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSA 181 (330)
T ss_dssp --TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSC
T ss_pred --CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceee
Confidence 5678888889999999988 777777766655566777777776 6667788999999998 8888777765566777
Q ss_pred EEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccc
Q 003459 191 IDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSR 270 (818)
Q Consensus 191 v~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~ 270 (818)
+.+.+++.+++ ++ +.|..|| .+++.+.........+.++.+.++|.+.+...++++..++- .++....+......
T Consensus 182 ~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~ 256 (330)
T 3hxj_A 182 ASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRI 256 (330)
T ss_dssp CEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCC
T ss_pred eEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCc
Confidence 77777777554 44 7899999 78887777766666788999999887666555566777753 33333333322222
Q ss_pred eeeeeecCCCEEEEEEcCCeEEEEEec
Q 003459 271 LSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 271 v~~l~~~~g~lLatg~~Dg~V~IWdvd 297 (818)
........+..|.+++.+|.|..++.+
T Consensus 257 ~~~~~~~~~g~l~v~t~~ggl~~~d~~ 283 (330)
T 3hxj_A 257 ESSPVIGNTDTIYFGSYDGHLYAINPD 283 (330)
T ss_dssp CSCCEECTTSCEEEECTTCEEEEECTT
T ss_pred cccceEcCCCeEEEecCCCCEEEECCC
Confidence 233344434566677888889999864
No 229
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.13 E-value=4.2e-08 Score=106.22 Aligned_cols=217 Identities=10% Similarity=-0.041 Sum_probs=141.4
Q ss_pred CeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 003459 61 GIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY 139 (818)
Q Consensus 61 ~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l 139 (818)
...+..|++++. ++++...++.|..||..+++.. .+. ....+.++.|.++|+++++. .+ .|++||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 356789999754 5566666889999999887654 333 34679999999999876654 44 4999999887754332
Q ss_pred ec---C-CCCeEEEEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEE-eCCCe
Q 003459 140 KG---H-TRGVNAIRFTPDGRWVVSGGE------DNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATG-SADRT 208 (818)
Q Consensus 140 ~~---h-~~~V~~l~fspdg~~L~sgs~------Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasg-s~Dg~ 208 (818)
.. . ...+..++++|+|+++++... .+.|..+| +++... +..+......++|+|+++.|+.+ +.++.
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~~~~~ 202 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDTKVNR 202 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEETTTCE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEECCCCE
Confidence 21 1 235889999999997665542 25677777 465433 32233457899999999876555 45789
Q ss_pred EEEEECC--CC-e-----EEEEeCCCCCCeeEEEEeCCCCEEEEEEC-CCEEEEEecCCceeccccccccceeeeee--c
Q 003459 209 VKFWDLE--TF-E-----LIGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFSWEPIRCHDAVDVGWSRLSDLNV--H 277 (818)
Q Consensus 209 I~IwDl~--t~-~-----~i~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~--~ 277 (818)
|.+||+. ++ . .+..+......+..++++++|.++++... ++|.+|+. .++....+......+..+.+ +
T Consensus 203 I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~ 281 (326)
T 2ghs_A 203 LMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGP 281 (326)
T ss_dssp EEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEEST
T ss_pred EEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecC
Confidence 9999986 55 2 23333333455788999999987776654 45777776 34444444443333444443 3
Q ss_pred CCCEEEEE
Q 003459 278 EGKLLGCS 285 (818)
Q Consensus 278 ~g~lLatg 285 (818)
+++.|.++
T Consensus 282 d~~~L~vt 289 (326)
T 2ghs_A 282 DASRLLVT 289 (326)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEE
Confidence 44544433
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.11 E-value=1.1e-08 Score=122.47 Aligned_cols=236 Identities=14% Similarity=0.081 Sum_probs=169.2
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCC-C----CCeEE-EEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEE
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGH-T----SGIDS-VSFDSSEVLVAAGAA------SGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h-~----~~V~~-l~fspdg~~Lasgs~------DG~I~IWDl~t~~~v~~l 97 (818)
..+++++.|+.|..+|..+++.+..+..+ . ..+.. ... .+..+++++. +|.|+.||..+|+.+..+
T Consensus 129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~ 206 (677)
T 1kb0_A 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRW 206 (677)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEe
Confidence 35777888999999999999999888754 2 11111 111 2345555543 699999999999999887
Q ss_pred cCCCCC--------------------------------eEEEEEeCCCCEEEEEECCC-------------------cEE
Q 003459 98 TGHRSN--------------------------------CISVDFHPFGEFFASGSLDT-------------------NLK 126 (818)
Q Consensus 98 ~~h~~~--------------------------------V~sv~fspdg~~Lasgs~Dg-------------------~I~ 126 (818)
...... ...+++.+++..++.++.++ .|.
T Consensus 207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~ 286 (677)
T 1kb0_A 207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV 286 (677)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence 642211 13578889999988887664 599
Q ss_pred EEECCCCeEEEEEec--CC-------CCeEEEEEcCCC---CEEEEEECCCeEEEEECCCCeEEEEEecCCCC-------
Q 003459 127 IWDIRKKGCIHTYKG--HT-------RGVNAIRFTPDG---RWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQ------- 187 (818)
Q Consensus 127 IwDl~~~~~i~~l~~--h~-------~~V~~l~fspdg---~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~------- 187 (818)
.+|..+++.+..++. |. .....+....+| ..++.++.+|.|+++|..+|+.+..+......
T Consensus 287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~ 366 (677)
T 1kb0_A 287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK 366 (677)
T ss_dssp EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence 999999999988764 21 122233344477 68899999999999999999998877632110
Q ss_pred ----E------------------------EEEEEeCCCCEEEEEeC----------------------------------
Q 003459 188 ----I------------------------QCIDFHPHEFLLATGSA---------------------------------- 205 (818)
Q Consensus 188 ----I------------------------~sv~fspdg~~Lasgs~---------------------------------- 205 (818)
+ ..++|+|+..++++...
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 446 (677)
T 1kb0_A 367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF 446 (677)
T ss_dssp TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence 1 14688998888877543
Q ss_pred ---------CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccc
Q 003459 206 ---------DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW 268 (818)
Q Consensus 206 ---------Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~ 268 (818)
.|.|..||+.+++.+..+.. ..++....+..+|..+++++.+ .+++||..+++.+..+....
T Consensus 447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 447 NAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp CSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred ccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC
Confidence 27899999999998887753 2344555677777788877655 59999999999887776554
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.09 E-value=1.7e-08 Score=113.06 Aligned_cols=220 Identities=16% Similarity=0.173 Sum_probs=157.0
Q ss_pred eCCCcEEEEEeCCCeEEEEECCCC----ceEEEec------C-CCCCeEEEEEcCCCCEEEEEECC------CeEEEEEC
Q 003459 26 RKSSRVLVTGGEDHKVNLWAIGKP----NAILSLS------G-HTSGIDSVSFDSSEVLVAAGAAS------GTIKLWDL 88 (818)
Q Consensus 26 p~~~~lLatgs~Dg~V~lWdl~~~----~~i~~l~------~-h~~~V~~l~fspdg~~Lasgs~D------G~I~IWDl 88 (818)
++..++++.|..+++|+++|+.+. +...++. . ....-..+...|+| +++++..+ |.|.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 666677777888899999998644 5556652 0 11234567888999 66665555 78999999
Q ss_pred CCCeEEEEEcCCCC---CeEEEEEeCCCCEEEEEE-------------------CCCcEEEEECCCCeEEEEEecCC--C
Q 003459 89 EEAKIVRTLTGHRS---NCISVDFHPFGEFFASGS-------------------LDTNLKIWDIRKKGCIHTYKGHT--R 144 (818)
Q Consensus 89 ~t~~~v~~l~~h~~---~V~sv~fspdg~~Lasgs-------------------~Dg~I~IwDl~~~~~i~~l~~h~--~ 144 (818)
.+++++..+..... --..+.|+|+++.+++.. .+..|.+||+.+++.+.++.... .
T Consensus 172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999999873222 234588899999888885 36899999999998888887531 2
Q ss_pred CeEEEEE--cCCCCEEEEEEC------CCeEEEEECCCCeE--EEEE--ecC----------------CCCEEEEEEeCC
Q 003459 145 GVNAIRF--TPDGRWVVSGGE------DNTVKLWDLTAGKL--LHDF--KCH----------------EGQIQCIDFHPH 196 (818)
Q Consensus 145 ~V~~l~f--spdg~~L~sgs~------Dg~I~IwDl~t~~~--i~~~--~~h----------------~~~I~sv~fspd 196 (818)
....+.| +|+++++++++. ++.|.+|....++. ...+ ... ......|.+++|
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 3445656 999999888875 56787776655431 1111 110 234678999999
Q ss_pred CCEEEEEeC-CCeEEEEECC---CCeEEEEeCCC--------------CCCeeEEEEeCCCCEEEEEE
Q 003459 197 EFLLATGSA-DRTVKFWDLE---TFELIGSAGPE--------------TSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 197 g~~Lasgs~-Dg~I~IwDl~---t~~~i~~~~~~--------------~~~I~sl~fspdg~~Lasgs 246 (818)
|++|+++.. .+.|.+||+. +.+.+..+... .+..+.+.++|||++|+++.
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999888775 6799999985 34555554322 11468999999999999887
No 232
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.05 E-value=4.3e-08 Score=117.49 Aligned_cols=255 Identities=11% Similarity=0.084 Sum_probs=171.2
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCC--CCCeEEEEEcC---CCCEEEEEE------CCCeEEEEECCCCeEEEEEc
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGH--TSGIDSVSFDS---SEVLVAAGA------ASGTIKLWDLEEAKIVRTLT 98 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h--~~~V~~l~fsp---dg~~Lasgs------~DG~I~IWDl~t~~~v~~l~ 98 (818)
..+++++.|+.|..+|..+++.+..+... ......+...| ++ .+++++ .+|.|+.||..+|+.+..+.
T Consensus 122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEec
Confidence 35778888999999999999999877642 11111111122 44 444443 36899999999999988775
Q ss_pred CCC-------------------------------CCeEEEEEeCCCCEEEEEECCCc-------------------EEEE
Q 003459 99 GHR-------------------------------SNCISVDFHPFGEFFASGSLDTN-------------------LKIW 128 (818)
Q Consensus 99 ~h~-------------------------------~~V~sv~fspdg~~Lasgs~Dg~-------------------I~Iw 128 (818)
... .....+++.|++..+++++.++. |..|
T Consensus 201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al 280 (689)
T 1yiq_A 201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV 280 (689)
T ss_dssp SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence 210 01125788898899999887764 9999
Q ss_pred ECCCCeEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCCC-C--------
Q 003459 129 DIRKKGCIHTYKG--HT-------RGVNAIRFTPDGR---WVVSGGEDNTVKLWDLTAGKLLHDFKCHEG-Q-------- 187 (818)
Q Consensus 129 Dl~~~~~i~~l~~--h~-------~~V~~l~fspdg~---~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~-~-------- 187 (818)
|..+++.+..++. |. .+........+|+ .++.++.+|.++++|..+|+.+........ .
T Consensus 281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 9999999988874 21 1222222233565 788999999999999999998855432110 0
Q ss_pred ------------------------------EEEEEEeCCCCEEEEEeC--------------------------------
Q 003459 188 ------------------------------IQCIDFHPHEFLLATGSA-------------------------------- 205 (818)
Q Consensus 188 ------------------------------I~sv~fspdg~~Lasgs~-------------------------------- 205 (818)
-..++|+|+..++++...
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 112678888777776532
Q ss_pred -------------CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccccce
Q 003459 206 -------------DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGWSRL 271 (818)
Q Consensus 206 -------------Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~~~v 271 (818)
+|.|+.||+.+++.+.....+. ++....+...|.++++|+.+ .+++||.++++.+..+.......
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~ 519 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM 519 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc
Confidence 3789999999999988775443 23334566677788888765 59999999999887766553322
Q ss_pred e-eee-ecCCC-EEEEEE
Q 003459 272 S-DLN-VHEGK-LLGCSY 286 (818)
Q Consensus 272 ~-~l~-~~~g~-lLatg~ 286 (818)
. .+. ..+|+ ++++..
T Consensus 520 ~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 520 AAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp SCCEEEEETTEEEEEEEE
T ss_pred cCceEEEECCEEEEEEEe
Confidence 1 122 35665 444443
No 233
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=99.04 E-value=3.3e-08 Score=118.04 Aligned_cols=271 Identities=12% Similarity=0.071 Sum_probs=181.4
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCCC----------e-EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTSG----------I-DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~----------V-~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (818)
.+++++.++.|..+|..+++.+..+...... + ..+.+ .+..|++++.|+.|..+|..+|+.+..+..
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeecc
Confidence 4667777899999999999999888643211 0 11222 355788888999999999999999988764
Q ss_pred CCC-CeEEEEEeC--CCCEEEEEEC------CCcEEEEECCCCeEEEEEecCC---C-----------------------
Q 003459 100 HRS-NCISVDFHP--FGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHT---R----------------------- 144 (818)
Q Consensus 100 h~~-~V~sv~fsp--dg~~Lasgs~------Dg~I~IwDl~~~~~i~~l~~h~---~----------------------- 144 (818)
... ....+...| .+..++++.. +|.|+.||..+++.+..+.... .
T Consensus 146 ~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~ 225 (668)
T 1kv9_A 146 TDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL 225 (668)
T ss_dssp SCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH
T ss_pred CCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeee
Confidence 211 000010111 1345555543 5899999999999998876311 0
Q ss_pred -----CeEEEEEcCCCCEEEEEECCC-------------------eEEEEECCCCeEEEEEec--CC-------CCEEEE
Q 003459 145 -----GVNAIRFTPDGRWVVSGGEDN-------------------TVKLWDLTAGKLLHDFKC--HE-------GQIQCI 191 (818)
Q Consensus 145 -----~V~~l~fspdg~~L~sgs~Dg-------------------~I~IwDl~t~~~i~~~~~--h~-------~~I~sv 191 (818)
....+++.|++..++.++.++ .|..+|..+|+.+..++. |. .+....
T Consensus 226 ~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~ 305 (668)
T 1kv9_A 226 GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLA 305 (668)
T ss_dssp CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEE
T ss_pred CCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEE
Confidence 112468888888888887766 399999999999998874 22 233333
Q ss_pred EEeCCCC---EEEEEeCCCeEEEEECCCCeEEEEeCCCC------------CC------------------------eeE
Q 003459 192 DFHPHEF---LLATGSADRTVKFWDLETFELIGSAGPET------------SG------------------------VRC 232 (818)
Q Consensus 192 ~fspdg~---~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~------------~~------------------------I~s 232 (818)
.+..+|. .++.++.+|.++++|..+|+.+....... .+ -..
T Consensus 306 d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~ 385 (668)
T 1kv9_A 306 ELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHS 385 (668)
T ss_dssp EEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSC
T ss_pred EeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCc
Confidence 3444665 78899999999999999999884432111 00 012
Q ss_pred EEEeCCCCEEEEEEC-------------------------------------CCEEEEEecCCceeccccccccceeeee
Q 003459 233 LTFNPDGRTLLCGLH-------------------------------------ESLKVFSWEPIRCHDAVDVGWSRLSDLN 275 (818)
Q Consensus 233 l~fspdg~~Lasgs~-------------------------------------d~I~Vwd~~~~~~~~~~~~~~~~v~~l~ 275 (818)
++++|+...+++... +.|..||..+++................
T Consensus 386 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~ 465 (668)
T 1kv9_A 386 MSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTL 465 (668)
T ss_dssp CEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEE
T ss_pred ceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCcee
Confidence 678888777665211 3477777777776554444333222233
Q ss_pred ecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 276 VHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 276 ~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
...+.+++++..|+.|++||.+++++.-
T Consensus 466 ~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 466 STAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EeCCCEEEEECCcccchhhhhhcChhhe
Confidence 3567788888999999999999888654
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.02 E-value=6.6e-07 Score=93.41 Aligned_cols=220 Identities=7% Similarity=-0.031 Sum_probs=149.3
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IWDl~t~~~v~~ 96 (818)
.+.+++|+++++.++++-..++.|..++.........+...-....++++++++..|+.+ ...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899998777777777778999999987655443333333578999999976655554 4467899999875433222
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEEC---CCcEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEE
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGSL---DTNLKIWDIRKKGCIHTY-KGHTRGVNAIRFTPDGRWVVSGGE-DNTVKLWD 171 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs~---Dg~I~IwDl~~~~~i~~l-~~h~~~V~~l~fspdg~~L~sgs~-Dg~I~IwD 171 (818)
+.........++++|++.+|+.+.. .+.|..+++.... ...+ .........+++++++..|+.+.. .+.|.++|
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~ 195 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN 195 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence 3322346789999997776666654 3688888876433 2222 223345789999998877766654 57899999
Q ss_pred CCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCC-CCeeEEEEeCCCC
Q 003459 172 LTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET-SGVRCLTFNPDGR 240 (818)
Q Consensus 172 l~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~-~~I~sl~fspdg~ 240 (818)
.........+.. ......+++. .+.++++....+.|..+|..+++.+..+.... .....+++.|++.
T Consensus 196 ~~g~~~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 196 PAQPGRRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTEEEEEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred cCCCceEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 975443333332 3344667664 44455555566899999999999888876543 2468888888875
No 235
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.01 E-value=1.2e-08 Score=111.27 Aligned_cols=230 Identities=11% Similarity=0.086 Sum_probs=152.0
Q ss_pred CCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEc-------CCCCCeEEEEEeCCCCEEEEEEC-----CCcE
Q 003459 60 SGIDSVSFDSSEVLVAAGAA--SGTIKLWDLEEAKIVRTLT-------GHRSNCISVDFHPFGEFFASGSL-----DTNL 125 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~--DG~I~IWDl~t~~~v~~l~-------~h~~~V~sv~fspdg~~Lasgs~-----Dg~I 125 (818)
..+..++++++|+++++... ++.++||.+.+++.. .+. .+...+..+++.++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 343555555456533 222 24467899999999876555433 5789
Q ss_pred EEEECCCCeEEEEEecC------CCCeEEEEEcCCCCEEEEEE----CCCeEEEEECCCCeEEEEEecCCCCEE-EEEEe
Q 003459 126 KIWDIRKKGCIHTYKGH------TRGVNAIRFTPDGRWVVSGG----EDNTVKLWDLTAGKLLHDFKCHEGQIQ-CIDFH 194 (818)
Q Consensus 126 ~IwDl~~~~~i~~l~~h------~~~V~~l~fspdg~~L~sgs----~Dg~I~IwDl~t~~~i~~~~~h~~~I~-sv~fs 194 (818)
.+||+.+++.+..+... ...+..+++++++..++.+. .++.|.+||+.+++....+..|..... ...+.
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~ 175 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV 175 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence 99999999877777532 23568999998655554443 578999999998887766654322110 13455
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCcee----------ccc
Q 003459 195 PHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCH----------DAV 264 (818)
Q Consensus 195 pdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~----------~~~ 264 (818)
++|..+.+.+.++.+..|. ..+..|+|+|||++|+++...+-++|.++..... ..+
T Consensus 176 ~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 241 (343)
T 2qe8_A 176 IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKI 241 (343)
T ss_dssp ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTC
T ss_pred ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcce
Confidence 6777777777888776653 2367899999999999886665577776532110 000
Q ss_pred cc--cccceeeee-ecCCCEEEEEEcCCeEEEEEecCCCceee
Q 003459 265 DV--GWSRLSDLN-VHEGKLLGCSYNQSCVGVWVVDISRIEPY 304 (818)
Q Consensus 265 ~~--~~~~v~~l~-~~~g~lLatg~~Dg~V~IWdvd~~~~~~~ 304 (818)
.. .......+. ..+|.++++...++.|.+|+...+++..+
T Consensus 242 ~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~ 284 (343)
T 2qe8_A 242 ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLL 284 (343)
T ss_dssp EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEE
Confidence 00 111112233 36788889988999999999844554443
No 236
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.98 E-value=3.5e-07 Score=102.46 Aligned_cols=246 Identities=13% Similarity=0.147 Sum_probs=163.0
Q ss_pred eEEEEECCC-----CceEEEecC--CCCCeEEEEE-----------c--CCCCEEEE-EECCCeEEEEECCCC----eEE
Q 003459 40 KVNLWAIGK-----PNAILSLSG--HTSGIDSVSF-----------D--SSEVLVAA-GAASGTIKLWDLEEA----KIV 94 (818)
Q Consensus 40 ~V~lWdl~~-----~~~i~~l~~--h~~~V~~l~f-----------s--pdg~~Las-gs~DG~I~IWDl~t~----~~v 94 (818)
.|.+.|+.. ++.+..+.- -........| + .++++|++ +..++.|+++|+.+. +..
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 466666654 566655541 1123333444 5 67776665 555789999999765 777
Q ss_pred EEEc-------CCCCCeEEEEEeCCCCEEEEEECC------CcEEEEECCCCeEEEEEecCC---CCeEEEEEcCCCCEE
Q 003459 95 RTLT-------GHRSNCISVDFHPFGEFFASGSLD------TNLKIWDIRKKGCIHTYKGHT---RGVNAIRFTPDGRWV 158 (818)
Q Consensus 95 ~~l~-------~h~~~V~sv~fspdg~~Lasgs~D------g~I~IwDl~~~~~i~~l~~h~---~~V~~l~fspdg~~L 158 (818)
+++. .....-..+...|+| .++++..+ |.|.++|..+.+.+.++.... ..-..+.|+|+++++
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~m 202 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVL 202 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEE
T ss_pred eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEE
Confidence 7773 111234567788999 66665555 789999999999999886321 223468899999998
Q ss_pred EEEE-------------------CCCeEEEEECCCCeEEEEEecC-C-CCEEEEEE--eCCCCEEEEEe------CCCeE
Q 003459 159 VSGG-------------------EDNTVKLWDLTAGKLLHDFKCH-E-GQIQCIDF--HPHEFLLATGS------ADRTV 209 (818)
Q Consensus 159 ~sgs-------------------~Dg~I~IwDl~t~~~i~~~~~h-~-~~I~sv~f--spdg~~Lasgs------~Dg~I 209 (818)
++.. .+.+|.+||+.+++.+.++... . .....+.| +|+++++++++ .+++|
T Consensus 203 vsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V 282 (462)
T 2ece_A 203 VSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSI 282 (462)
T ss_dssp EECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEE
T ss_pred EEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceE
Confidence 8885 3689999999999888888753 1 23445555 99999888877 46688
Q ss_pred EEEECCCCeE--EEE--eCCC----------------CCCeeEEEEeCCCCEEEEEECC--CEEEEEec-CC--ceeccc
Q 003459 210 KFWDLETFEL--IGS--AGPE----------------TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWE-PI--RCHDAV 264 (818)
Q Consensus 210 ~IwDl~t~~~--i~~--~~~~----------------~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~-~~--~~~~~~ 264 (818)
.+|..+.++. +.. +... ......|.+++||++|+++..+ .|.+|++. +. +....+
T Consensus 283 ~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I 362 (462)
T 2ece_A 283 WLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKV 362 (462)
T ss_dssp EEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred EEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEE
Confidence 8776654431 111 1110 2346889999999999988654 69999985 22 333444
Q ss_pred cccc---------------cceeeeeecCCCEEEEEE
Q 003459 265 DVGW---------------SRLSDLNVHEGKLLGCSY 286 (818)
Q Consensus 265 ~~~~---------------~~v~~l~~~~g~lLatg~ 286 (818)
..+. .+-.....++|++|.++.
T Consensus 363 ~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 363 KLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 4431 122223347899998887
No 237
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.95 E-value=9.3e-09 Score=113.73 Aligned_cols=250 Identities=10% Similarity=0.019 Sum_probs=165.5
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEe---------CCCeEEEEECCCCceEEEecCC-------CCCeEEEEEcC
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGG---------EDHKVNLWAIGKPNAILSLSGH-------TSGIDSVSFDS 69 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs---------~Dg~V~lWdl~~~~~i~~l~~h-------~~~V~~l~fsp 69 (818)
...+.++..-..+ .++|+|++..++++.. .++.|.+||..+++.+..+... ......++|+|
T Consensus 56 ~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp 133 (368)
T 1mda_H 56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133 (368)
T ss_dssp TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence 3445556554555 7999996666555542 3688999999999999988633 12456899999
Q ss_pred CCCEEEEEEC--CCeEEE--EECCCCeEEEEEcCCCCCeEEEEEeCCCC-EEEEEECCCcEEEEECCC-----CeEEEE-
Q 003459 70 SEVLVAAGAA--SGTIKL--WDLEEAKIVRTLTGHRSNCISVDFHPFGE-FFASGSLDTNLKIWDIRK-----KGCIHT- 138 (818)
Q Consensus 70 dg~~Lasgs~--DG~I~I--WDl~t~~~v~~l~~h~~~V~sv~fspdg~-~Lasgs~Dg~I~IwDl~~-----~~~i~~- 138 (818)
||++++++.. +..|.+ +|..+ +..+... . + +.+.|+++ .+++.+.||.+.+.|+.+ ++....
T Consensus 134 DGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~-~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 134 SSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-S-C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp TSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-S-C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred CCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-C-c--eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 9999998875 467888 99877 4444321 1 1 12334443 455666788888889876 332211
Q ss_pred ---EecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--eEEEEEecC----------CCCEEEEEEeCCCCEEEEE
Q 003459 139 ---YKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG--KLLHDFKCH----------EGQIQCIDFHPHEFLLATG 203 (818)
Q Consensus 139 ---l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~--~~i~~~~~h----------~~~I~sv~fspdg~~Lasg 203 (818)
+.....+. . .+++..++..+. +.|.+.|+..+ +.+..+... ......+.|+|++..++.+
T Consensus 207 t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 207 TGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp CTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred eeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 11112333 3 566666666666 99999998653 233322211 0111226899998888765
Q ss_pred eC---------CCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEE-EEEE--CCCEEEEEecCCceeccccccccc
Q 003459 204 SA---------DRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL-LCGL--HESLKVFSWEPIRCHDAVDVGWSR 270 (818)
Q Consensus 204 s~---------Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~L-asgs--~d~I~Vwd~~~~~~~~~~~~~~~~ 270 (818)
.. ++.+.+||+.+++.+..+.... ...+|.|++||+++ ++.. ++.+.|+|..+.+....+.++..+
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCC
T ss_pred eccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCC
Confidence 43 2356799999999988775433 57999999999854 4444 467999999999988777665543
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.94 E-value=1e-10 Score=129.58 Aligned_cols=187 Identities=15% Similarity=0.077 Sum_probs=106.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCC-eE-
Q 003459 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRG-VN- 147 (818)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~-V~- 147 (818)
++..|++++.||.|+.||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||..+++.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 577899999999999999999999988875 45555556667777888889999999999988877666533110 10
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCC
Q 003459 148 AIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPET 227 (818)
Q Consensus 148 ~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~ 227 (818)
...+. ++..+++++.++.|+.||..+|+.+..+..+. ...++|++..+++++.|+.|+.||.++++.+..+....
T Consensus 86 sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 00111 34568888889999999999999988877543 23456788899999999999999999988665543211
Q ss_pred CCeeEEEEeCC----CCEEEEEECCCEEEEEecCCceecccc
Q 003459 228 SGVRCLTFNPD----GRTLLCGLHESLKVFSWEPIRCHDAVD 265 (818)
Q Consensus 228 ~~I~sl~fspd----g~~Lasgs~d~I~Vwd~~~~~~~~~~~ 265 (818)
.....+..+ +.+++.+.++.+..||..+++......
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred --ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 122233333 444443334458888887776654433
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.94 E-value=1.9e-07 Score=98.37 Aligned_cols=201 Identities=9% Similarity=0.080 Sum_probs=142.5
Q ss_pred eEEEecCCCC--CeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCeEEEEEcCCC-CCeEEEEEeCCCCEEEEEE-CCCc
Q 003459 51 AILSLSGHTS--GIDSVSFDSSEVLVAAGAA--SGTIKLWDLEEAKIVRTLTGHR-SNCISVDFHPFGEFFASGS-LDTN 124 (818)
Q Consensus 51 ~i~~l~~h~~--~V~~l~fspdg~~Lasgs~--DG~I~IWDl~t~~~v~~l~~h~-~~V~sv~fspdg~~Lasgs-~Dg~ 124 (818)
.+.++. |.. ....+.|++++.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. ++.|+.+. .++.
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~ 87 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNI 87 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSE
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCE
Confidence 444453 443 3689999998754444443 5799999999999998876322 223345555 55555554 5789
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCEEEEEEeCCCCE
Q 003459 125 LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-----GQIQCIDFHPHEFL 199 (818)
Q Consensus 125 I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-----~~I~sv~fspdg~~ 199 (818)
+.++|..+.+.+.++...... ...+++||++++++..++.|.++|..+.+.+..+.... ..++.+.|. +|.+
T Consensus 88 v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~l 164 (266)
T 2iwa_A 88 GFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEV 164 (266)
T ss_dssp EEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEE
Confidence 999999999999988643111 23355678888887778999999999998888776321 246788888 7766
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeCCC-------------CCCeeEEEEeCCCCEEEEEECC--CEEEEEecC
Q 003459 200 LATGSADRTVKFWDLETFELIGSAGPE-------------TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEP 257 (818)
Q Consensus 200 Lasgs~Dg~I~IwDl~t~~~i~~~~~~-------------~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~ 257 (818)
++....++.|.+.|..+++.+..+... ......|+|+|+++.++++... .+.+.++.+
T Consensus 165 yvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 165 WANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 555556889999999999998887532 1356899999999888877655 355555543
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.92 E-value=1.9e-07 Score=107.98 Aligned_cols=270 Identities=11% Similarity=0.105 Sum_probs=188.6
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecC---------------------------------C------CCCeEEEEEcC--
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSG---------------------------------H------TSGIDSVSFDS-- 69 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~---------------------------------h------~~~V~~l~fsp-- 69 (818)
.|.+|+..|.++|+-+.+.+.++.+.. + .+.......+.
T Consensus 17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~ 96 (595)
T 1fwx_A 17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTE 96 (595)
T ss_dssp EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEET
T ss_pred EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCC
Confidence 477889999999999988877766421 0 01122234443
Q ss_pred ---CCCEEEEEEC-CCeEEEEECCCCeEEEEEcC-CCCCeEEEEE-e-CCCCEEEEEE------------------CCCc
Q 003459 70 ---SEVLVAAGAA-SGTIKLWDLEEAKIVRTLTG-HRSNCISVDF-H-PFGEFFASGS------------------LDTN 124 (818)
Q Consensus 70 ---dg~~Lasgs~-DG~I~IWDl~t~~~v~~l~~-h~~~V~sv~f-s-pdg~~Lasgs------------------~Dg~ 124 (818)
||++++.... ++.|.+.|+.+.++...+.- .......+++ . |+++++++++ .++.
T Consensus 97 g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 97 GKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp TEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 7887777665 55799999999998885542 2345788888 5 9999998885 2457
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--------------------------------------e
Q 003459 125 LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN--------------------------------------T 166 (818)
Q Consensus 125 I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg--------------------------------------~ 166 (818)
+.++|..+.+.+.++.--. .-..++++|+|+++++.+.+. .
T Consensus 177 vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~ 255 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 255 (595)
T ss_dssp EEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence 9999999999888877433 356788999999999988653 4
Q ss_pred EEEEECCC--CeE-EEEEecCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCe------------EEEEeCCCCCCe
Q 003459 167 VKLWDLTA--GKL-LHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETFE------------LIGSAGPETSGV 230 (818)
Q Consensus 167 I~IwDl~t--~~~-i~~~~~h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t~~------------~i~~~~~~~~~I 230 (818)
|.+.|.++ ++. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.+ .+.... -....
T Consensus 256 V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP 333 (595)
T 1fwx_A 256 VKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGP 333 (595)
T ss_dssp EEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCE
T ss_pred EEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCc
Confidence 67777776 444 445543 23456799999999777665 67899999999753 344443 34568
Q ss_pred eEEEEeCCCCEEEEEE--CCCEEEEEecC----------Cceeccccccccceee------eeecCCCEEEEEEcC--Ce
Q 003459 231 RCLTFNPDGRTLLCGL--HESLKVFSWEP----------IRCHDAVDVGWSRLSD------LNVHEGKLLGCSYNQ--SC 290 (818)
Q Consensus 231 ~sl~fspdg~~Lasgs--~d~I~Vwd~~~----------~~~~~~~~~~~~~v~~------l~~~~g~lLatg~~D--g~ 290 (818)
+.++|+++| ++++.. ++.+.+|+++. ....+.+++++.+-.. ...+||++|+++..- ..
T Consensus 334 ~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr 412 (595)
T 1fwx_A 334 LHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDR 412 (595)
T ss_dssp EEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTS
T ss_pred ceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccc
Confidence 999999999 666654 33589999987 4556666777664211 123789999876542 23
Q ss_pred E-----------EEEEecCCCceee
Q 003459 291 V-----------GVWVVDISRIEPY 304 (818)
Q Consensus 291 V-----------~IWdvd~~~~~~~ 304 (818)
+ .++|+..++....
T Consensus 413 ~~~~gp~~~~~~ql~dis~~~m~lv 437 (595)
T 1fwx_A 413 FLNVGPLKPENDQLIDISGDKMVLV 437 (595)
T ss_dssp SCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred cccCCCCCCCcceEEEcCCCcEEEE
Confidence 3 7788866665543
No 241
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.91 E-value=3.5e-07 Score=107.45 Aligned_cols=271 Identities=9% Similarity=0.045 Sum_probs=175.2
Q ss_pred EEEEEeC-CCeEEEEEC-CCCceEEEecCCCCC-----------eEEEEEcCCCCE----EEEEECCCeEEEEECCCCeE
Q 003459 31 VLVTGGE-DHKVNLWAI-GKPNAILSLSGHTSG-----------IDSVSFDSSEVL----VAAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 31 lLatgs~-Dg~V~lWdl-~~~~~i~~l~~h~~~-----------V~~l~fspdg~~----Lasgs~DG~I~IWDl~t~~~ 93 (818)
.+++++. ++.|.-+|. .+++.+..+...... ...+++.|.+.. |++++.|+.|..+|..+|+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 4566666 889999999 899999887643211 123455333333 78888999999999999999
Q ss_pred EEEEcCCCC----CeEE-EEEeCCCCEEEEEE------CCCcEEEEECCCCeEEEEEecCCCC-----------------
Q 003459 94 VRTLTGHRS----NCIS-VDFHPFGEFFASGS------LDTNLKIWDIRKKGCIHTYKGHTRG----------------- 145 (818)
Q Consensus 94 v~~l~~h~~----~V~s-v~fspdg~~Lasgs------~Dg~I~IwDl~~~~~i~~l~~h~~~----------------- 145 (818)
+........ .+.+ -... +..+++++ .+|.|+.+|..+++.+..+......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 887653220 1111 1111 34556555 3799999999999999887643211
Q ss_pred --------------------e-EEEEEcCCCCEEEEEECC----------------CeEEEEECCCCeEEEEEecCCC--
Q 003459 146 --------------------V-NAIRFTPDGRWVVSGGED----------------NTVKLWDLTAGKLLHDFKCHEG-- 186 (818)
Q Consensus 146 --------------------V-~~l~fspdg~~L~sgs~D----------------g~I~IwDl~t~~~i~~~~~h~~-- 186 (818)
+ ..+++.++...++.+..+ +.|..+|..+|+.+..++....
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 0 134566777788877665 3899999999999998875321
Q ss_pred -------CEEEEEEe-CCC---CEEEEEeCCCeEEEEECCCCeEEEEeCCCC-------------CCe------------
Q 003459 187 -------QIQCIDFH-PHE---FLLATGSADRTVKFWDLETFELIGSAGPET-------------SGV------------ 230 (818)
Q Consensus 187 -------~I~sv~fs-pdg---~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~-------------~~I------------ 230 (818)
...-+... .+| ..++.++.+|.++++|.++++.+....... .++
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~ 381 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHL 381 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCC
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCC
Confidence 11112222 467 578888999999999999999887643110 011
Q ss_pred --------------eEEEEeCCCCEEEEEEC----------------------------------------CCEEEEEec
Q 003459 231 --------------RCLTFNPDGRTLLCGLH----------------------------------------ESLKVFSWE 256 (818)
Q Consensus 231 --------------~sl~fspdg~~Lasgs~----------------------------------------d~I~Vwd~~ 256 (818)
..++|+|+..++++... +.+..||..
T Consensus 382 ~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~ 461 (599)
T 1w6s_A 382 AKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAI 461 (599)
T ss_dssp EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTT
T ss_pred ccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECC
Confidence 24577887776665321 235555555
Q ss_pred CCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 257 PIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 257 ~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
+++...................+.+++.++.|+.++.||.+++++.-
T Consensus 462 tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 462 TGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp TCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 55544333322222222223456777779999999999999998654
No 242
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.90 E-value=2.7e-08 Score=114.88 Aligned_cols=218 Identities=14% Similarity=0.084 Sum_probs=158.4
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceEEEecC-CCCCeEEEEE-c-CCCCEEEEEE------------------CCCeEEE
Q 003459 27 KSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-HTSGIDSVSF-D-SSEVLVAAGA------------------ASGTIKL 85 (818)
Q Consensus 27 ~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~-h~~~V~~l~f-s-pdg~~Lasgs------------------~DG~I~I 85 (818)
|+..++++...++.|.+.|+.+.++...+.- ....+..+++ + |++.++++++ .++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 4555556556677899999999998885542 2346889998 5 8999999885 2468999
Q ss_pred EECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC--------------------------------------cEEE
Q 003459 86 WDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--------------------------------------NLKI 127 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg--------------------------------------~I~I 127 (818)
+|.++.+.+.++.-.. ....++++|+|+++++.+.+. .|.+
T Consensus 180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V 258 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 258 (595)
T ss_dssp EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence 9999999988887322 456788999999988888653 4777
Q ss_pred EECCC--CeE-EEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe------------EEEEEecCCCCEEEE
Q 003459 128 WDIRK--KGC-IHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGK------------LLHDFKCHEGQIQCI 191 (818)
Q Consensus 128 wDl~~--~~~-i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~IwDl~t~~------------~i~~~~~h~~~I~sv 191 (818)
.|..+ ++. +..+.. .....++.++|||+++++++ .+..|.++|+.+.+ .+.+... ......+
T Consensus 259 ID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~ 336 (595)
T 1fwx_A 259 VDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHT 336 (595)
T ss_dssp EECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEE
T ss_pred EeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceE
Confidence 77776 444 444432 23457899999999888776 46789999998653 3444442 3456889
Q ss_pred EEeCCCCEEEEEeCCCeEEEEECCC----------CeEEEEeCCCCCCe-----eEEEEeCCCCEEEEEEC
Q 003459 192 DFHPHEFLLATGSADRTVKFWDLET----------FELIGSAGPETSGV-----RCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 192 ~fspdg~~Lasgs~Dg~I~IwDl~t----------~~~i~~~~~~~~~I-----~sl~fspdg~~Lasgs~ 247 (818)
+|+|+|...++...|++|.+||+.+ .+.+..+..+-.+- .++.++|||++|+++..
T Consensus 337 aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 337 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999995556667899999999987 56677766553321 22345899999998754
No 243
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.89 E-value=4.9e-07 Score=105.85 Aligned_cols=268 Identities=11% Similarity=0.070 Sum_probs=175.1
Q ss_pred EEEEEeC-CCeEEEEEC-CCCceEEEecCCCCC-----------eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 31 VLVTGGE-DHKVNLWAI-GKPNAILSLSGHTSG-----------IDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 31 lLatgs~-Dg~V~lWdl-~~~~~i~~l~~h~~~-----------V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (818)
.+++++. ++.|..+|. .+++.+..+...... -..+++ .+..|++++.|+.|..+|..+|+.+..+
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 4556666 899999999 899999887632210 011222 3557888888999999999999998876
Q ss_pred cCCCC----CeEE-EEEeCCCCEEEEEEC------CCcEEEEECCCCeEEEEEecCCCC---------------------
Q 003459 98 TGHRS----NCIS-VDFHPFGEFFASGSL------DTNLKIWDIRKKGCIHTYKGHTRG--------------------- 145 (818)
Q Consensus 98 ~~h~~----~V~s-v~fspdg~~Lasgs~------Dg~I~IwDl~~~~~i~~l~~h~~~--------------------- 145 (818)
..... .+.+ ... .+..+++++. ++.|+.+|..+++.+.++......
T Consensus 142 ~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~ 219 (571)
T 2ad6_A 142 EVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL 219 (571)
T ss_dssp ECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred cCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccccc
Confidence 53220 1111 111 1345666654 789999999999999887642210
Q ss_pred -----------------eEEEEEcCCCCEEEEEECC----------------CeEEEEECCCCeEEEEEecC--C-----
Q 003459 146 -----------------VNAIRFTPDGRWVVSGGED----------------NTVKLWDLTAGKLLHDFKCH--E----- 185 (818)
Q Consensus 146 -----------------V~~l~fspdg~~L~sgs~D----------------g~I~IwDl~t~~~i~~~~~h--~----- 185 (818)
...+++.++...++.+..+ +.|..+|..+|+.+..++.. .
T Consensus 220 g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~ 299 (571)
T 2ad6_A 220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA 299 (571)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred ccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccc
Confidence 0135667766677776532 36999999999999988742 1
Q ss_pred ---CCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCeEEEEeCCCC-------------CCe----------------
Q 003459 186 ---GQIQCIDFHPHE---FLLATGSADRTVKFWDLETFELIGSAGPET-------------SGV---------------- 230 (818)
Q Consensus 186 ---~~I~sv~fspdg---~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~-------------~~I---------------- 230 (818)
.++ -+....+| .+++.++.+|.++++|..+++.+....... .++
T Consensus 300 ~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~ 378 (571)
T 2ad6_A 300 GVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI 378 (571)
T ss_dssp CCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEE
T ss_pred cCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEE
Confidence 122 12233467 367888999999999999999887653221 111
Q ss_pred ----------eEEEEeCCCCEEEEEEC--------------------------------------CCEEEEEecCCceec
Q 003459 231 ----------RCLTFNPDGRTLLCGLH--------------------------------------ESLKVFSWEPIRCHD 262 (818)
Q Consensus 231 ----------~sl~fspdg~~Lasgs~--------------------------------------d~I~Vwd~~~~~~~~ 262 (818)
..++|+|+..++++... +.+..||..+++...
T Consensus 379 ~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W 458 (571)
T 2ad6_A 379 CPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKW 458 (571)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEE
T ss_pred CCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEE
Confidence 24678888777776532 236666666666554
Q ss_pred cccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 263 AVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 263 ~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
.+..............+.++.+++.||.|++||..++++.-
T Consensus 459 ~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw 499 (571)
T 2ad6_A 459 TKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp EEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EecCCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEE
Confidence 44333222222223345677778999999999999988664
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.87 E-value=3.4e-07 Score=95.54 Aligned_cols=198 Identities=11% Similarity=0.163 Sum_probs=141.2
Q ss_pred eEEEecCCCCC--eEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcE
Q 003459 51 AILSLSGHTSG--IDSVSFDSSEVLVAAGAASG--TIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNL 125 (818)
Q Consensus 51 ~i~~l~~h~~~--V~~l~fspdg~~Lasgs~DG--~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I 125 (818)
.+.++. |... ...+.|+ ++.++.+++.+| .|+++|+.+++.+..+... .........++++.|.... .++.+
T Consensus 33 vv~~~p-hd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v 109 (262)
T 3nol_A 33 IVHSYP-HDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLG 109 (262)
T ss_dssp EEEEEE-CCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEE
T ss_pred EEEEec-CCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEE
Confidence 344553 5433 4789998 677777777766 8999999999999888743 3333332333456655555 47899
Q ss_pred EEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCEEEEEEeCCCCEE
Q 003459 126 KIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-----GQIQCIDFHPHEFLL 200 (818)
Q Consensus 126 ~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-----~~I~sv~fspdg~~L 200 (818)
.+||..+.+.+.++..... ...+++|++.|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|.++
T Consensus 110 ~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ly 185 (262)
T 3nol_A 110 FVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIF 185 (262)
T ss_dssp EEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEE
Confidence 9999999999999874332 22333567778777778889999999998888776421 345667886 67666
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeCCC------------CCCeeEEEEeCCCCEEEEEECCCEEEEEe
Q 003459 201 ATGSADRTVKFWDLETFELIGSAGPE------------TSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (818)
Q Consensus 201 asgs~Dg~I~IwDl~t~~~i~~~~~~------------~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (818)
+..-.+..|.+.|.++++.+..+... ....+.|+|+|+++.|++.+..--++|.+
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev 252 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEI 252 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEE
Confidence 66557889999999999998876432 23568999999988888877664445543
No 245
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.86 E-value=1e-05 Score=98.29 Aligned_cols=276 Identities=12% Similarity=0.092 Sum_probs=183.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-------HTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~-------h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
...|.++...+ ++. |..|+.++-|.+||..+++....... ....|.++...++|.+.+ |+.+| |.+||.
T Consensus 214 ~~~i~~i~~d~-~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~ 289 (795)
T 4a2l_A 214 TKQIQAILQQS-PTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFND-LNIYHE 289 (795)
T ss_dssp CCCEEEEEEEE-TTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESSC-EEEEET
T ss_pred CCeeEEEEEcC-CCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCCh-hheEcC
Confidence 45688888877 444 45555444499999876654433221 135699999998887654 45554 899998
Q ss_pred CCCeEEEEEcC-------CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec-------CCCCeEEEEEcCC
Q 003459 89 EEAKIVRTLTG-------HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG-------HTRGVNAIRFTPD 154 (818)
Q Consensus 89 ~t~~~v~~l~~-------h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~-------h~~~V~~l~fspd 154 (818)
.+++....... ....|.++...++|. |..|+.++-|..|+..+.... .+.. ....|.++...++
T Consensus 290 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~ 367 (795)
T 4a2l_A 290 GTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKD 367 (795)
T ss_dssp TTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTT
T ss_pred CCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCC
Confidence 87765443221 235689999988776 556777777999987655432 2221 2346999999888
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEEec--------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC--
Q 003459 155 GRWVVSGGEDNTVKLWDLTAGKLLHDFKC--------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-- 224 (818)
Q Consensus 155 g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~--------h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~-- 224 (818)
|. |..|+.++-|..||..+++....... ....|.++...+++.+|.+|+.++-|..||..+++......
T Consensus 368 g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~ 446 (795)
T 4a2l_A 368 KN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN 446 (795)
T ss_dssp SC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTT
T ss_pred CC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC
Confidence 86 56677887899999887654432211 23568999998888867778887889999998876544322
Q ss_pred --CCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceecccc------ccccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 225 --PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVD------VGWSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 225 --~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~------~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
.....|.++...++|.+.+.. .+++.+|+.++.+...... .....+..+.. .+|.+.+ |.. +-|..|+
T Consensus 447 ~~l~~~~v~~i~~d~~g~lwigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~ 523 (795)
T 4a2l_A 447 SQLVNENVYAILPDGEGNLWLGT-LSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI-GGE-EGLSVFK 523 (795)
T ss_dssp SCCSCSCEEEEEECSSSCEEEEE-SSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE-EES-SCEEEEE
T ss_pred CCcCCCeeEEEEECCCCCEEEEe-cCceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE-EeC-CceEEEe
Confidence 234578999999988866655 4788899877665433221 11233455544 4555544 444 5688899
Q ss_pred ecCCCc
Q 003459 296 VDISRI 301 (818)
Q Consensus 296 vd~~~~ 301 (818)
.+..+.
T Consensus 524 ~~~~~~ 529 (795)
T 4a2l_A 524 QEGLDI 529 (795)
T ss_dssp EETTEE
T ss_pred CCCCeE
Confidence 887765
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.82 E-value=3.2e-06 Score=88.11 Aligned_cols=230 Identities=10% Similarity=-0.039 Sum_probs=141.8
Q ss_pred CEEEEEECCCeEEEEECCCCeE-----EEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCCeEEEEEecCCCC
Q 003459 72 VLVAAGAASGTIKLWDLEEAKI-----VRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIHTYKGHTRG 145 (818)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~t~~~-----v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~~~i~~l~~h~~~ 145 (818)
.+|+.+. .+.|+.+++..... ...+......+..++|++++..|+.+. .++.|..+|.........+......
T Consensus 2 ~~l~~~~-~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEc-CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 3455554 35788888875432 111221223567899999777666555 4679999998766544333333356
Q ss_pred eEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEECCCCeEEE
Q 003459 146 VNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA---DRTVKFWDLETFELIG 221 (818)
Q Consensus 146 V~~l~fspdg~~L~sgs-~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~---Dg~I~IwDl~t~~~i~ 221 (818)
...+++++++..|+.+. ..+.|.++|+..................++++|++..|+.+.. .+.|..+++.......
T Consensus 81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~ 160 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEE
Confidence 78999999766666554 4678999998743322222222246789999996555555443 4689888876433221
Q ss_pred EeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCC
Q 003459 222 SAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 222 ~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
...........++|++++..|+++..+ .|.+++.+.............+ ..+...++.++++....+.|.+++.+++
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P-~gi~~d~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYP-FAVTSYGKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSE-EEEEEETTEEEEEETTTTEEEEEETTTT
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCc-eEEEEeCCEEEEEECCCCeEEEEeCCCC
Confidence 222233457899999998888877654 4777777644332222222222 3444445555566666789999988877
Q ss_pred Ccee
Q 003459 300 RIEP 303 (818)
Q Consensus 300 ~~~~ 303 (818)
+...
T Consensus 240 ~~~~ 243 (267)
T 1npe_A 240 KEMD 243 (267)
T ss_dssp EEEE
T ss_pred CceE
Confidence 6443
No 247
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.80 E-value=1.4e-06 Score=91.74 Aligned_cols=203 Identities=12% Similarity=0.046 Sum_probs=143.8
Q ss_pred EEEEecCCCC--EEEEEEeeCCCcEEEEEeC--CCeEEEEECCCCceEEEecCCC-CCeEEEEEcCCCCEEEEEECCCeE
Q 003459 9 LQEFVAHSST--VNCLKIGRKSSRVLVTGGE--DHKVNLWAIGKPNAILSLSGHT-SGIDSVSFDSSEVLVAAGAASGTI 83 (818)
Q Consensus 9 l~~~~~H~~~--V~~lafsp~~~~lLatgs~--Dg~V~lWdl~~~~~i~~l~~h~-~~V~~l~fspdg~~Lasgs~DG~I 83 (818)
+.++ .|... ...++|+++ +.++++.+. ++.|.++|+.+++.+..+.-.. .....+++.. +.+.++.-.++.+
T Consensus 12 v~~~-p~~~~~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v 88 (266)
T 2iwa_A 12 LNEF-PHDPYAFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIG 88 (266)
T ss_dssp EEEE-ECCTTCCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEE
T ss_pred EEEE-ECCCCCCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEE
Confidence 3444 56643 689999985 566665553 5799999999999998876322 2334566652 2344444558999
Q ss_pred EEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----CCeEEEEEcCCCCEE
Q 003459 84 KLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-----RGVNAIRFTPDGRWV 158 (818)
Q Consensus 84 ~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~-----~~V~~l~fspdg~~L 158 (818)
.++|..+.+.+.++......- ..++++|+.++++..++.|.++|..+.+.+..+.-.. ...+.+.|. +|..+
T Consensus 89 ~viD~~t~~v~~~i~~g~~~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ly 165 (266)
T 2iwa_A 89 FIYDRRTLSNIKNFTHQMKDG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVW 165 (266)
T ss_dssp EEEETTTTEEEEEEECCSSSC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred EEEECCCCcEEEEEECCCCCe--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEE
Confidence 999999999999986331222 3355578877777778999999999988888776321 236788888 67544
Q ss_pred EEEECCCeEEEEECCCCeEEEEEecC-------------CCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCC
Q 003459 159 VSGGEDNTVKLWDLTAGKLLHDFKCH-------------EGQIQCIDFHPHEF-LLATGSADRTVKFWDLETF 217 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl~t~~~i~~~~~h-------------~~~I~sv~fspdg~-~Lasgs~Dg~I~IwDl~t~ 217 (818)
+....++.|.+.|..+++.+..+... ....+.|+|+|++. +++++...+.|...++...
T Consensus 166 vn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 166 ANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 44445789999999999999888632 13568999999976 5555657788888887653
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.78 E-value=2e-05 Score=95.65 Aligned_cols=278 Identities=12% Similarity=0.096 Sum_probs=183.2
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC-------CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG-------HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~-------h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
..|.++...+ ++. |..|..+ -|.+|+..++........ ....|.++...++|.+. .|+.++-|..|+..
T Consensus 263 ~~i~~i~~d~-~g~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~ 338 (795)
T 4a2l_A 263 NYIRSLAMDS-QNR-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPI 338 (795)
T ss_dssp SBEEEEEECT-TSC-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGG
T ss_pred CeEEEEEEcC-CCC-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCC
Confidence 5699998887 344 5556555 489999876654332211 23579999999888755 56777779999876
Q ss_pred CCeEEEEEc-----C-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEec--------CCCCeEEEEEcCCC
Q 003459 90 EAKIVRTLT-----G-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKG--------HTRGVNAIRFTPDG 155 (818)
Q Consensus 90 t~~~v~~l~-----~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~--------h~~~V~~l~fspdg 155 (818)
++....... + ....|.++...++|. |..|+.++-|..||..++........ ....|.++...++|
T Consensus 339 ~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 339 RNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK 417 (795)
T ss_dssp GGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT
T ss_pred cccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC
Confidence 554322111 0 234689998888775 55677777799999887654332211 23568999998888
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEe----cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC------
Q 003459 156 RWVVSGGEDNTVKLWDLTAGKLLHDFK----CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP------ 225 (818)
Q Consensus 156 ~~L~sgs~Dg~I~IwDl~t~~~i~~~~----~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~------ 225 (818)
+.|..|+.++-|.+||..+++...... .....|.++...++|.+.+.. . +.|.+||..+++.......
T Consensus 418 ~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp TEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBC
T ss_pred CEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEcccccccccc
Confidence 867778888889999998876443221 124578999988888755544 4 4588999888765433211
Q ss_pred CCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccc------cccccceeeeee-cCCCEEEEEEcCCeEEEEEecC
Q 003459 226 ETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV------DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 226 ~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~------~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
....|.++...++|.+.+... +++..|+.+..+. ... ......+..+.. .+|.+.+ |+.. -|..|+.+.
T Consensus 496 ~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~d~~~ 571 (795)
T 4a2l_A 496 VSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWV-GTRE-GFYCFNEKD 571 (795)
T ss_dssp CCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEE-EESS-CEEEEETTT
T ss_pred CCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEE-EeCC-CceeECCCC
Confidence 235689999999998776554 8899998877654 111 112223445544 4566544 4444 688888888
Q ss_pred CCceeee
Q 003459 299 SRIEPYT 305 (818)
Q Consensus 299 ~~~~~~~ 305 (818)
.++..|.
T Consensus 572 ~~~~~~~ 578 (795)
T 4a2l_A 572 KQIKRYN 578 (795)
T ss_dssp TEEEEEC
T ss_pred CcEEEeC
Confidence 7776653
No 249
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.77 E-value=4.5e-06 Score=97.86 Aligned_cols=272 Identities=9% Similarity=0.005 Sum_probs=171.5
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCe---------EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI---------DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT 98 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V---------~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~ 98 (818)
++. +++++.++.|..+|..+++.+..+....... ..+++ .+..|++++.++.|..+|..+|+.+..+.
T Consensus 68 ~g~-vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~ 144 (582)
T 1flg_A 68 DGV-IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKK 144 (582)
T ss_dssp TTE-EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEE
T ss_pred CCE-EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeec
Confidence 444 4555554459999999999998876432210 11222 35578888899999999999999988775
Q ss_pred CCCC----CeE-E-EEEeC--CCC-EEEEEE------CCCcEEEEECCCCeEEEEEecCCCCe-----------------
Q 003459 99 GHRS----NCI-S-VDFHP--FGE-FFASGS------LDTNLKIWDIRKKGCIHTYKGHTRGV----------------- 146 (818)
Q Consensus 99 ~h~~----~V~-s-v~fsp--dg~-~Lasgs------~Dg~I~IwDl~~~~~i~~l~~h~~~V----------------- 146 (818)
.... .+. . +.... +++ .+++++ .+|.|+.+|..+++.+.........+
T Consensus 145 ~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~ 224 (582)
T 1flg_A 145 FADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAP 224 (582)
T ss_dssp CSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCT
T ss_pred CCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccc
Confidence 4321 111 1 11111 123 566654 37899999999999888764321100
Q ss_pred ------------------------EEEEEcCCCCEEEEEEC--------------------C----CeEEEEECCCCeEE
Q 003459 147 ------------------------NAIRFTPDGRWVVSGGE--------------------D----NTVKLWDLTAGKLL 178 (818)
Q Consensus 147 ------------------------~~l~fspdg~~L~sgs~--------------------D----g~I~IwDl~t~~~i 178 (818)
..+++.|+...++.+.. | +.|..+|..+|+.+
T Consensus 225 ~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~ 304 (582)
T 1flg_A 225 SWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVK 304 (582)
T ss_dssp TSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEE
T ss_pred cCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEE
Confidence 13456677777777663 2 58999999999999
Q ss_pred EEEec--CC--------CCEEEEEEe-CCC---CEEEEEeCCCeEEEEECCCCeEEEEeCCCC-------------CC--
Q 003459 179 HDFKC--HE--------GQIQCIDFH-PHE---FLLATGSADRTVKFWDLETFELIGSAGPET-------------SG-- 229 (818)
Q Consensus 179 ~~~~~--h~--------~~I~sv~fs-pdg---~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~-------------~~-- 229 (818)
..++. |. .++. +... .+| .+++.++.+|.++++|.++|+.+..+.... .+
T Consensus 305 W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~ 383 (582)
T 1flg_A 305 WFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE 383 (582)
T ss_dssp EEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred EEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence 98864 22 1121 2222 466 478889999999999999999886643221 00
Q ss_pred ------------------------------eeEEEEeCCCCEEEEEE---------------------------------
Q 003459 230 ------------------------------VRCLTFNPDGRTLLCGL--------------------------------- 246 (818)
Q Consensus 230 ------------------------------I~sl~fspdg~~Lasgs--------------------------------- 246 (818)
-..++++|+...+++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~ 463 (582)
T 1flg_A 384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD 463 (582)
T ss_dssp CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence 01346677655555432
Q ss_pred -CCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCcee
Q 003459 247 -HESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIEP 303 (818)
Q Consensus 247 -~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~~ 303 (818)
.+.+..||..+++...................+.+++.+..||.++.||.+++++.-
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 123666666666655444333222222222346777779999999999999988654
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.71 E-value=4.8e-06 Score=89.40 Aligned_cols=233 Identities=10% Similarity=0.056 Sum_probs=145.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-C------------------CCCCeEEEEEeCCCCEEEEEE
Q 003459 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-G------------------HRSNCISVDFHPFGEFFASGS 120 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~-~------------------h~~~V~sv~fspdg~~Lasgs 120 (818)
....+++|++++++++++..++.|..||..+++...... . .......+++.+++..|+++.
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d 98 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence 345678999999878888889999999987765432211 0 012478899998444566666
Q ss_pred CCCcEEEEECCCCeEEEEEec-----CCCCeEEEEEcC-CCCEEEEEEC-----------------CCeEEEEECCCCeE
Q 003459 121 LDTNLKIWDIRKKGCIHTYKG-----HTRGVNAIRFTP-DGRWVVSGGE-----------------DNTVKLWDLTAGKL 177 (818)
Q Consensus 121 ~Dg~I~IwDl~~~~~i~~l~~-----h~~~V~~l~fsp-dg~~L~sgs~-----------------Dg~I~IwDl~t~~~ 177 (818)
..+.|..+|..++.. ..+.. .......+++.+ +|+..++-.. ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 666689999765532 22221 113468899999 9986665432 36799999887764
Q ss_pred EEEEecCCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECCCC---e--EEEEeCCCCCCeeEEEEeCCCCEEEEEEC----
Q 003459 178 LHDFKCHEGQIQCIDFHPHEFLLATG-SADRTVKFWDLETF---E--LIGSAGPETSGVRCLTFNPDGRTLLCGLH---- 247 (818)
Q Consensus 178 i~~~~~h~~~I~sv~fspdg~~Lasg-s~Dg~I~IwDl~t~---~--~i~~~~~~~~~I~sl~fspdg~~Lasgs~---- 247 (818)
...... ......++|+|++.+|+.+ ..++.|..|++... . .+.. ..+ ...++++++|+++++...
T Consensus 178 ~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~ 252 (322)
T 2fp8_A 178 TLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSEELDG 252 (322)
T ss_dssp EEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred EEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecCcccc
Confidence 333222 2334679999999866655 55689999998742 2 2222 223 788999999987666543
Q ss_pred ----C-CEEEEEecC-Cceecccccc----ccceeeeeecCCCEEEEEEcCCeEEEEEecC
Q 003459 248 ----E-SLKVFSWEP-IRCHDAVDVG----WSRLSDLNVHEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 248 ----d-~I~Vwd~~~-~~~~~~~~~~----~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
. ...|+-+++ ++....+... ......+...+++++++....+.|.+++++.
T Consensus 253 ~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 253 NMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp STTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred cccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 1 233444443 3333333222 2334444456677777777778888887653
No 251
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.69 E-value=1.8e-06 Score=90.12 Aligned_cols=195 Identities=13% Similarity=0.075 Sum_probs=137.9
Q ss_pred ceEEEecCCC--CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeE--EEEEeCCCCEE-EEEECCCc
Q 003459 50 NAILSLSGHT--SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCI--SVDFHPFGEFF-ASGSLDTN 124 (818)
Q Consensus 50 ~~i~~l~~h~--~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~--sv~fspdg~~L-asgs~Dg~ 124 (818)
+.+.++. |. .....+.|+ ++.++.+.+.+|.|+++|+++++.+..+ -..... .+++. ++.| +..-.++.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~--g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASD--GERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEEC--SSCEEEEESSSCE
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEe--CCEEEEEEccCCE
Confidence 3444553 43 335789997 4667777788899999999999988877 223333 35554 4444 44446889
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCEEEEEEeCCCCE
Q 003459 125 LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-----GQIQCIDFHPHEFL 199 (818)
Q Consensus 125 I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-----~~I~sv~fspdg~~ 199 (818)
+.+||..+.+.+.++..... -..++ +|++.|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|.+
T Consensus 118 v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l 193 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI 193 (268)
T ss_dssp EEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence 99999999999999874322 23444 568888888778999999999999888776422 245778887 7766
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeCCC-------------CCCeeEEEEeCCCCEEEEEECCCEEEEE
Q 003459 200 LATGSADRTVKFWDLETFELIGSAGPE-------------TSGVRCLTFNPDGRTLLCGLHESLKVFS 254 (818)
Q Consensus 200 Lasgs~Dg~I~IwDl~t~~~i~~~~~~-------------~~~I~sl~fspdg~~Lasgs~d~I~Vwd 254 (818)
++....+..|.+.|.++++.+..+... ....+.|+|+|+++.|++.+..--++|.
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~e 261 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFE 261 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEE
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEE
Confidence 655556889999999999988876431 2356899999987777666554334443
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.69 E-value=5.8e-06 Score=85.52 Aligned_cols=197 Identities=10% Similarity=0.090 Sum_probs=138.4
Q ss_pred eEEEecCCC--CCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEcCCCCC-eEEEEEeCCCCEEEE-EECCCc
Q 003459 51 AILSLSGHT--SGIDSVSFDSSEVLVAAGAASG--TIKLWDLEEAKIVRTLTGHRSN-CISVDFHPFGEFFAS-GSLDTN 124 (818)
Q Consensus 51 ~i~~l~~h~--~~V~~l~fspdg~~Lasgs~DG--~I~IWDl~t~~~v~~l~~h~~~-V~sv~fspdg~~Las-gs~Dg~ 124 (818)
.+.++ .|. .....+.|+. +.++.+.+.+| .|+.+|+.+++.+..+.-.... -..+++. ++.|.. .-.++.
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSE
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCE
Confidence 34444 354 4567899986 55566666654 8999999999999888643321 1234444 455444 445889
Q ss_pred EEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC-----CCEEEEEEeCCCCE
Q 003459 125 LKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-----GQIQCIDFHPHEFL 199 (818)
Q Consensus 125 I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-----~~I~sv~fspdg~~ 199 (818)
+.+||..+.+.+.++...... ..++ +++..|+.+..++.|.++|..+.+.+..+.... ..++.+.|. +|.+
T Consensus 87 v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 999999999999998753332 3444 567777777778899999999998888876422 346677776 6666
Q ss_pred EEEEeCCCeEEEEECCCCeEEEEeCC-------------CCCCeeEEEEeCCCCEEEEEECCCEEEEEe
Q 003459 200 LATGSADRTVKFWDLETFELIGSAGP-------------ETSGVRCLTFNPDGRTLLCGLHESLKVFSW 255 (818)
Q Consensus 200 Lasgs~Dg~I~IwDl~t~~~i~~~~~-------------~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~ 255 (818)
++..-.+..|.+.|.++++.+..+.. .....+.|+|+|++..|++.+..--++|.+
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v 231 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEI 231 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEE
Confidence 65555688999999999999887541 123568999999988888776554345543
No 253
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.68 E-value=3.7e-06 Score=100.24 Aligned_cols=236 Identities=14% Similarity=0.124 Sum_probs=159.2
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCC-CeEEEEEcC--CCCEEEEEEC------CCeEEEEECCCCeEEEEEcCCC
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTS-GIDSVSFDS--SEVLVAAGAA------SGTIKLWDLEEAKIVRTLTGHR 101 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~-~V~~l~fsp--dg~~Lasgs~------DG~I~IWDl~t~~~v~~l~~h~ 101 (818)
.++.++.|+.|..+|..+++.+..+..... ....+...| .+..++++.. +|.|..||..+|+.+..+....
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~ 198 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVP 198 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSC
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccC
Confidence 577788899999999999999988764211 000001111 1335555543 5899999999999998875211
Q ss_pred ---C----------------------------CeEEEEEeCCCCEEEEEECCC-------------------cEEEEECC
Q 003459 102 ---S----------------------------NCISVDFHPFGEFFASGSLDT-------------------NLKIWDIR 131 (818)
Q Consensus 102 ---~----------------------------~V~sv~fspdg~~Lasgs~Dg-------------------~I~IwDl~ 131 (818)
. ....+++.+....++.++.++ .|..+|..
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~ 278 (668)
T 1kv9_A 199 GDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD 278 (668)
T ss_dssp CCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT
T ss_pred CCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC
Confidence 0 112468888888888887766 39999999
Q ss_pred CCeEEEEEec--CC-------CCeEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCCC------------C
Q 003459 132 KKGCIHTYKG--HT-------RGVNAIRFTPDGR---WVVSGGEDNTVKLWDLTAGKLLHDFKCHEG------------Q 187 (818)
Q Consensus 132 ~~~~i~~l~~--h~-------~~V~~l~fspdg~---~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~------------~ 187 (818)
+++.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+|+.+..+..... +
T Consensus 279 tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p 358 (668)
T 1kv9_A 279 TGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRP 358 (668)
T ss_dssp TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCE
T ss_pred CCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCc
Confidence 9999988874 22 2233333334665 688899999999999999998855432110 0
Q ss_pred E------------------------EEEEEeCCCCEEEEEe------------------------------------CCC
Q 003459 188 I------------------------QCIDFHPHEFLLATGS------------------------------------ADR 207 (818)
Q Consensus 188 I------------------------~sv~fspdg~~Lasgs------------------------------------~Dg 207 (818)
+ ..++++|+..+++... .+|
T Consensus 359 ~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g 438 (668)
T 1kv9_A 359 VEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSG 438 (668)
T ss_dssp EECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEE
T ss_pred cccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccc
Confidence 0 1257777766555421 247
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceecccccc
Q 003459 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVG 267 (818)
Q Consensus 208 ~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~ 267 (818)
.|..||+.+++.+...... .+.....+...|.++++++.+ .+++||.++++.+..+...
T Consensus 439 ~l~A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 439 ALLAWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred eEEEEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 8999999999988776533 223334455567788888655 5999999998887666554
No 254
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.66 E-value=4.1e-06 Score=87.42 Aligned_cols=185 Identities=11% Similarity=0.086 Sum_probs=133.3
Q ss_pred cCCCC--EEEEEEeeCCCcEEEEEeCCC--eEEEEECCCCceEEEecCCCCC-eEEEEEcCCCCEEEE-EECCCeEEEEE
Q 003459 14 AHSST--VNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGHTSG-IDSVSFDSSEVLVAA-GAASGTIKLWD 87 (818)
Q Consensus 14 ~H~~~--V~~lafsp~~~~lLatgs~Dg--~V~lWdl~~~~~i~~l~~h~~~-V~~l~fspdg~~Las-gs~DG~I~IWD 87 (818)
.|... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+...... -..+++. +..|+. ...++.+.+||
T Consensus 38 phd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D 113 (262)
T 3nol_A 38 PHDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWN 113 (262)
T ss_dssp ECCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred cCCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEE
Confidence 66654 4889998 457777777776 8999999999999888753322 1334543 444444 44589999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--C---CCeEEEEEcCCCCEEEEEE
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--T---RGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h--~---~~V~~l~fspdg~~L~sgs 162 (818)
..+.+.+.++.... .-+.++ ++++.|+.+..++.|.++|..+.+.+.++... . ..++.+.|. +|+..+..-
T Consensus 114 ~~t~~~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w 189 (262)
T 3nol_A 114 IRNLRQVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW 189 (262)
T ss_dssp TTTCCEEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred CccCcEEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc
Confidence 99999999988432 223444 56777777766788999999999888877532 1 335567776 676554444
Q ss_pred CCCeEEEEECCCCeEEEEEecC------------CCCEEEEEEeCCCCEEEEEeCC
Q 003459 163 EDNTVKLWDLTAGKLLHDFKCH------------EGQIQCIDFHPHEFLLATGSAD 206 (818)
Q Consensus 163 ~Dg~I~IwDl~t~~~i~~~~~h------------~~~I~sv~fspdg~~Lasgs~D 206 (818)
.++.|.+.|..+++.+..+... ....+.|+|+|++..|++.+..
T Consensus 190 ~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 190 QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 6889999999999999888742 1356899999987777766643
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.66 E-value=5.7e-06 Score=96.79 Aligned_cols=234 Identities=12% Similarity=0.067 Sum_probs=154.6
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCC----CCeEE-EEEcCCCCEEEEEEC------CCeEEEEECCCCeEEEEEcC
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHT----SGIDS-VSFDSSEVLVAAGAA------SGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~----~~V~~-l~fspdg~~Lasgs~------DG~I~IWDl~t~~~v~~l~~ 99 (818)
.++.++.|+.|..+|..+++.+..+.... ..+.+ ... .+..+++++. +|.|..+|..+|+.+..+..
T Consensus 117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 57778889999999999999988765321 01111 111 1335566654 79999999999999887763
Q ss_pred CCCC-------------------------------------e-EEEEEeCCCCEEEEEECC----------------CcE
Q 003459 100 HRSN-------------------------------------C-ISVDFHPFGEFFASGSLD----------------TNL 125 (818)
Q Consensus 100 h~~~-------------------------------------V-~sv~fspdg~~Lasgs~D----------------g~I 125 (818)
.... + ..+++.+....++.++.+ +.|
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v 274 (571)
T 2ad6_A 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence 2110 0 135666766777766542 359
Q ss_pred EEEECCCCeEEEEEecCC----------CCeEEEEEcCCCC---EEEEEECCCeEEEEECCCCeEEEEEecCC-------
Q 003459 126 KIWDIRKKGCIHTYKGHT----------RGVNAIRFTPDGR---WVVSGGEDNTVKLWDLTAGKLLHDFKCHE------- 185 (818)
Q Consensus 126 ~IwDl~~~~~i~~l~~h~----------~~V~~l~fspdg~---~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~------- 185 (818)
..+|..+++.+..++... .++ -+....+|+ .++.++.+|.++++|..+|+.+..+....
T Consensus 275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~ 353 (571)
T 2ad6_A 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK 353 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCcccccc
Confidence 999999999998886321 222 122234674 57788889999999999999988775322
Q ss_pred ------CCE--------------------------EEEEEeCCCCEEEEEe-----------------------------
Q 003459 186 ------GQI--------------------------QCIDFHPHEFLLATGS----------------------------- 204 (818)
Q Consensus 186 ------~~I--------------------------~sv~fspdg~~Lasgs----------------------------- 204 (818)
.++ ..++|+|+..+|++..
T Consensus 354 ~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 433 (571)
T 2ad6_A 354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred ccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceecc
Confidence 111 2357788766666653
Q ss_pred --------CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccc
Q 003459 205 --------ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW 268 (818)
Q Consensus 205 --------~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~ 268 (818)
.+|.|..||..+++.+..+... ..+....+...+..+++++.+ .+.+||..+++....+....
T Consensus 434 ~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp CTTSTTSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CccccCCCCCCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCC
Confidence 3578999999999988776432 222333333345566666554 59999999888876665543
No 256
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.63 E-value=2.7e-05 Score=83.07 Aligned_cols=233 Identities=13% Similarity=0.077 Sum_probs=147.1
Q ss_pred eEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC--CeEEE
Q 003459 8 KLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS--GTIKL 85 (818)
Q Consensus 8 kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D--G~I~I 85 (818)
.+..|..+ ....+++|++ +++++++-..++.|..||... +....+. ......++++.++++++++.... ..|..
T Consensus 24 ~~~~~p~~-~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 24 IITSFPVN-TFLENLASAP-DGTIFVTNHEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEECTT-CCEEEEEECT-TSCEEEEETTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred EeEeCCCC-CCcceEEECC-CCCEEEEeCCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 44455433 5688999999 566777766889999999764 3333333 23568899999999966655432 24777
Q ss_pred EECCCCeEEEEEcC-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeE-EEEEe---------cCCCCeEEEEEcCC
Q 003459 86 WDLEEAKIVRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC-IHTYK---------GHTRGVNAIRFTPD 154 (818)
Q Consensus 86 WDl~t~~~v~~l~~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~-i~~l~---------~h~~~V~~l~fspd 154 (818)
+|..+++....... .......++..+.+..+++-..++.|+.+|...+.. +.... ..-.....+ +++
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 78788876443321 122334555555444444444588999999876532 22111 111234555 788
Q ss_pred CCEEEEEE-CCCeEEEEECCC-CeE--EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE--EeCCCCC
Q 003459 155 GRWVVSGG-EDNTVKLWDLTA-GKL--LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG--SAGPETS 228 (818)
Q Consensus 155 g~~L~sgs-~Dg~I~IwDl~t-~~~--i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~--~~~~~~~ 228 (818)
+++|+.+. ..+.|..||+.. ++. ...+.. ......+++.++|+++++....+.|.+||.. ++... .+.....
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~ 255 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVI 255 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCT
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccC
Confidence 88776665 467899999874 321 111211 1334678899999887777778899999976 65532 3333335
Q ss_pred CeeEEEEe---CCCCEEEEEECC
Q 003459 229 GVRCLTFN---PDGRTLLCGLHE 248 (818)
Q Consensus 229 ~I~sl~fs---pdg~~Lasgs~d 248 (818)
...+++|. +|+..|+++..+
T Consensus 256 ~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 256 GSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TEEEEEECCSTTTTTEEEEEECT
T ss_pred CceEEEEecccCCCCEEEEECCC
Confidence 68999999 898888876554
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.61 E-value=1.2e-05 Score=86.31 Aligned_cols=238 Identities=12% Similarity=0.059 Sum_probs=148.5
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecC--------------------CCCCeEEEEEcC-C
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSG--------------------HTSGIDSVSFDS-S 70 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~--------------------h~~~V~~l~fsp-d 70 (818)
+.+.-....+++|.+ ++++++++..++.|..|+..++... .+.. ....+.++++.+ +
T Consensus 14 ~~g~~~~p~~i~~d~-~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDS-TNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp EECSSSCCCCEECCT-TCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred cCCccCCceEEEEcC-CCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 333334567789998 4666778888999999998655432 2210 013578999997 5
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEE---cC-CCCCeEEEEEeC-CCCEEEEEEC-----------------CCcEEEE
Q 003459 71 EVLVAAGAASGTIKLWDLEEAKIVRTL---TG-HRSNCISVDFHP-FGEFFASGSL-----------------DTNLKIW 128 (818)
Q Consensus 71 g~~Lasgs~DG~I~IWDl~t~~~v~~l---~~-h~~~V~sv~fsp-dg~~Lasgs~-----------------Dg~I~Iw 128 (818)
++ |+++...+.|..+|..++...... .+ .......+++.+ +|.++++-.. ++.|+.|
T Consensus 92 g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 92 NQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp TE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred Cc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 54 555555566888997765432211 11 113467899999 8876665432 3679999
Q ss_pred ECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCe--EEEEEecCCCCEEEEEEeCCCCEEEEEeC
Q 003459 129 DIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSG-GEDNTVKLWDLTAGK--LLHDFKCHEGQIQCIDFHPHEFLLATGSA 205 (818)
Q Consensus 129 Dl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sg-s~Dg~I~IwDl~t~~--~i~~~~~h~~~I~sv~fspdg~~Lasgs~ 205 (818)
|..+++....... ......++|+++|++|+.+ ...+.|.+||+.... ....+....+ ...+++.++|.++++...
T Consensus 171 d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 171 DPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp ETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEE
T ss_pred eCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecC
Confidence 9877764332222 2334679999999977666 456899999987421 1112211233 788999999987666544
Q ss_pred ----------CCeEEEEECCCCeEEEEeCCCC----CCeeEEEEeCCCCEEEEEE-CCCEEEEEec
Q 003459 206 ----------DRTVKFWDLETFELIGSAGPET----SGVRCLTFNPDGRTLLCGL-HESLKVFSWE 256 (818)
Q Consensus 206 ----------Dg~I~IwDl~t~~~i~~~~~~~----~~I~sl~fspdg~~Lasgs-~d~I~Vwd~~ 256 (818)
.+.|..+|.. ++.+..+.... ..+.++++. +|++++++. .+.|.+|+++
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEH-DGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEE-TTEEEEECSSCSEEEEEEC-
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEe-CCEEEEeecCCCceEEEecc
Confidence 4678888874 77666654332 346777763 554444432 3457777765
No 258
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=4.7e-05 Score=92.11 Aligned_cols=282 Identities=11% Similarity=0.048 Sum_probs=175.5
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec--------------CCCCCeEEEEEcCCCCEEEEEECCC
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS--------------GHTSGIDSVSFDSSEVLVAAGAASG 81 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~--------------~h~~~V~~l~fspdg~~Lasgs~DG 81 (818)
...|.++...+ ++. |..|...+-|.+++..+........ .....|.++....+|.+ ..|+.++
T Consensus 257 ~~~i~~i~~d~-~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~ 333 (781)
T 3v9f_A 257 SSYIFSIKQLK-DNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGG 333 (781)
T ss_dssp CCCEEEEEECT-TSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSS
T ss_pred CceEEEEEECC-CCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCC
Confidence 35688888876 343 6667765568999986654322111 13457999999988874 4666667
Q ss_pred eEEEEECCCCeEEEEEc--------C-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEE---ecCCCCeEEE
Q 003459 82 TIKLWDLEEAKIVRTLT--------G-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTY---KGHTRGVNAI 149 (818)
Q Consensus 82 ~I~IWDl~t~~~v~~l~--------~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l---~~h~~~V~~l 149 (818)
-|..|+...+....... . ....|.++...++|. |..|+.++-|..||..++...... ......|.++
T Consensus 334 Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i 412 (781)
T 3v9f_A 334 GINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS 412 (781)
T ss_dssp CEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred eEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence 78999987654322211 0 234688998887765 556666666999998654322111 1234568999
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCC-
Q 003459 150 RFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPE- 226 (818)
Q Consensus 150 ~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~--~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~- 226 (818)
...++|. |..|+.++-|..||..+++...... .....|.++...+++.+ ..|+. +-|..||..+++........
T Consensus 413 ~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~ 489 (781)
T 3v9f_A 413 LKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIHHYDTSN 489 (781)
T ss_dssp EECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCCEEECTTT
T ss_pred EECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEecccCcc
Confidence 9888776 5557777789999988775433211 13457899988887764 44555 56899998876543322221
Q ss_pred ----CCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccc---cccccceeeeee-cCCCEEEEEEcCCeEEEEEecC
Q 003459 227 ----TSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAV---DVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 227 ----~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~---~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
...|.++...++|.+.+....+++..|+.+..+..... ......+..+.. .+|.+ ..|+.+|-|..|+.+.
T Consensus 490 ~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wi~T~~Glv~~~d~~~ 568 (781)
T 3v9f_A 490 SQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQM-WLATGEGLVCFPSARN 568 (781)
T ss_dssp SSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCE-EEEETTEEEEESCTTT
T ss_pred cccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCE-EEEECCCceEEECCCC
Confidence 45789999999998776655577877776554432211 111223445544 45554 4445566558888888
Q ss_pred CCceeee
Q 003459 299 SRIEPYT 305 (818)
Q Consensus 299 ~~~~~~~ 305 (818)
+++..|.
T Consensus 569 ~~~~~~~ 575 (781)
T 3v9f_A 569 FDYQVFQ 575 (781)
T ss_dssp CCCEEEC
T ss_pred CcEEEcc
Confidence 8776654
No 259
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=6e-05 Score=91.21 Aligned_cols=280 Identities=11% Similarity=0.110 Sum_probs=173.5
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-------GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~-------~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
..|.++...+ ++. |..|..+ -+.+||..+++...... .....|.++....+|.+. .|+..+-|.++|..
T Consensus 211 ~~i~~i~~d~-~g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 211 NDVRCIYKDT-NGN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMILDLQ 286 (781)
T ss_dssp SSEEEEEECT-TCC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEEEETT
T ss_pred CceeEEEEcC-CCC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEEECCC
Confidence 4688888876 444 4455555 59999976654332211 124579999988887654 56664568899987
Q ss_pred CCeEEEEEc--------------CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe---------cCCCCe
Q 003459 90 EAKIVRTLT--------------GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK---------GHTRGV 146 (818)
Q Consensus 90 t~~~v~~l~--------------~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~---------~h~~~V 146 (818)
++....... -....|.++...++|. |..|+.++-|..|+........... .....|
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 365 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVV 365 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCE
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcce
Confidence 765432211 1235688998888775 6667767779999987654322110 023568
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE---ecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 147 NAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDF---KCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~---~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
.++...++|. |..|+.++-|..||..++...... ......|.++...+++.+. +|+.++-|..||..+++.....
T Consensus 366 ~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~ 443 (781)
T 3v9f_A 366 SSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLW-FGTYLGNISYYNTRLKKFQIIE 443 (781)
T ss_dssp EEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEE-EEETTEEEEEECSSSCEEEECC
T ss_pred EEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEE-EEeccCCEEEEcCCCCcEEEec
Confidence 9999888776 556676777899998754332111 1134568999888777654 4677677999998877654332
Q ss_pred C--CCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceecccccc-----ccceeeeee-cCCCEEEEEEcCCeEEEEE
Q 003459 224 G--PETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG-----WSRLSDLNV-HEGKLLGCSYNQSCVGVWV 295 (818)
Q Consensus 224 ~--~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~-----~~~v~~l~~-~~g~lLatg~~Dg~V~IWd 295 (818)
. .....|.++...++|.+.+ |+.+++..|+....+........ ...+..+.. .+|. |..|+.++-|..|+
T Consensus 444 ~~~~~~~~v~~i~~d~~g~lwi-gt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~ 521 (781)
T 3v9f_A 444 LEKNELLDVRVFYEDKNKKIWI-GTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYT 521 (781)
T ss_dssp STTTCCCCEEEEEECTTSEEEE-EETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEEC
T ss_pred cCCCCCCeEEEEEECCCCCEEE-EECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEe
Confidence 1 2346789999988886555 44578888887765443222111 234555554 4455 44555544577788
Q ss_pred ecCCCceeee
Q 003459 296 VDISRIEPYT 305 (818)
Q Consensus 296 vd~~~~~~~~ 305 (818)
.+.+++..+.
T Consensus 522 ~~~~~~~~~~ 531 (781)
T 3v9f_A 522 PDMQLVRKFN 531 (781)
T ss_dssp TTCCEEEEEC
T ss_pred CCCCeEEEcc
Confidence 8777766654
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.55 E-value=1.7e-05 Score=82.90 Aligned_cols=186 Identities=11% Similarity=0.107 Sum_probs=135.0
Q ss_pred EEEEecCCCC--EEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCe--EEEEEcCCCCEEEEEECCCeEE
Q 003459 9 LQEFVAHSST--VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGI--DSVSFDSSEVLVAAGAASGTIK 84 (818)
Q Consensus 9 l~~~~~H~~~--V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V--~~l~fspdg~~Lasgs~DG~I~ 84 (818)
++++ .|... ...+.|+ ++.++++.+.+|.|+++|+.+++.+..+ -. ... ..+++..+ ++......++.+.
T Consensus 46 v~~~-phd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g~-~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 46 IREY-PHATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDGE-RLYQLTWTEGLLF 119 (268)
T ss_dssp EEEE-ECCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECSS-CEEEEESSSCEEE
T ss_pred EEEE-cCCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeCC-EEEEEEccCCEEE
Confidence 3444 55543 4789987 5788888899999999999999988877 22 233 34666533 4444555789999
Q ss_pred EEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC--C---CCeEEEEEcCCCCEEE
Q 003459 85 LWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH--T---RGVNAIRFTPDGRWVV 159 (818)
Q Consensus 85 IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h--~---~~V~~l~fspdg~~L~ 159 (818)
+||..+.+.+.++... ..-+.++ ++++.|+.+..++.|+++|..+.+.+.++... . ..++.+.|. +|+.++
T Consensus 120 V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lya 195 (268)
T 3nok_A 120 TWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYA 195 (268)
T ss_dssp EEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred EEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEE
Confidence 9999999999999843 3334555 45788888878899999999999988877532 1 245677777 675444
Q ss_pred EEECCCeEEEEECCCCeEEEEEecC-------------CCCEEEEEEeCCCCEEEEEe
Q 003459 160 SGGEDNTVKLWDLTAGKLLHDFKCH-------------EGQIQCIDFHPHEFLLATGS 204 (818)
Q Consensus 160 sgs~Dg~I~IwDl~t~~~i~~~~~h-------------~~~I~sv~fspdg~~Lasgs 204 (818)
..-.+..|.+.|..+++.+..+... ....+.|+|+|++..|+..+
T Consensus 196 nvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 196 NIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 4446789999999999998887632 13579999999765555444
No 261
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.53 E-value=3.5e-05 Score=79.60 Aligned_cols=191 Identities=10% Similarity=0.032 Sum_probs=134.8
Q ss_pred eEEEEecCCC--CEEEEEEeeCCCcEEEEEeCCC--eEEEEECCCCceEEEecCCCCC-eEEEEEcCCCCEEEEEECCCe
Q 003459 8 KLQEFVAHSS--TVNCLKIGRKSSRVLVTGGEDH--KVNLWAIGKPNAILSLSGHTSG-IDSVSFDSSEVLVAAGAASGT 82 (818)
Q Consensus 8 kl~~~~~H~~--~V~~lafsp~~~~lLatgs~Dg--~V~lWdl~~~~~i~~l~~h~~~-V~~l~fspdg~~Lasgs~DG~ 82 (818)
++..-..|.. -...+.|+. +.++.+.+.+| .|+.+|+.+++.+..+...... -..+++.. +++......++.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSE
T ss_pred EEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCE
Confidence 3333336764 477999984 56777777654 8999999999999888643322 23445442 334444556899
Q ss_pred EEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC-----CCeEEEEEcCCCCE
Q 003459 83 IKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT-----RGVNAIRFTPDGRW 157 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~-----~~V~~l~fspdg~~ 157 (818)
+.+||..+.+.+.++.... .-+.++ +++..|+.+..++.|.++|..+.+.+.++.-.. ..++.+.|. +|+.
T Consensus 87 v~v~D~~tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~l 162 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGEL 162 (243)
T ss_dssp EEEEETTTTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEECCcCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEE
Confidence 9999999999999998433 334555 467777777778999999999998888776421 345667776 6665
Q ss_pred EEEEECCCeEEEEECCCCeEEEEEecC-------------CCCEEEEEEeCCCCEEEEEeC
Q 003459 158 VVSGGEDNTVKLWDLTAGKLLHDFKCH-------------EGQIQCIDFHPHEFLLATGSA 205 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t~~~i~~~~~h-------------~~~I~sv~fspdg~~Lasgs~ 205 (818)
++..-.+..|.+.|..+++.+..+... ....+.|+|+|++..|+..+.
T Consensus 163 yanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 163 LANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 544446789999999999999887621 125689999998766666553
No 262
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.48 E-value=1.2e-05 Score=94.56 Aligned_cols=234 Identities=14% Similarity=0.101 Sum_probs=152.2
Q ss_pred EEEEeCCCeEEEEECCCCceEEEecCCC----CCeEE-EEEcCCCCEEEEEE------CCCeEEEEECCCCeEEEEEcCC
Q 003459 32 LVTGGEDHKVNLWAIGKPNAILSLSGHT----SGIDS-VSFDSSEVLVAAGA------ASGTIKLWDLEEAKIVRTLTGH 100 (818)
Q Consensus 32 Latgs~Dg~V~lWdl~~~~~i~~l~~h~----~~V~~-l~fspdg~~Lasgs------~DG~I~IWDl~t~~~v~~l~~h 100 (818)
++.++.|+.|..+|..+++.+....... ..+.+ -... ++ .+++++ .+|.|+.+|..+|+.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 6778889999999999999988765322 01111 1111 34 455554 3799999999999998877632
Q ss_pred CCC-------------------------------------e-EEEEEeCCCCEEEEEECC----------------CcEE
Q 003459 101 RSN-------------------------------------C-ISVDFHPFGEFFASGSLD----------------TNLK 126 (818)
Q Consensus 101 ~~~-------------------------------------V-~sv~fspdg~~Lasgs~D----------------g~I~ 126 (818)
... + ..+++.+....++.+..+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 211 0 134566777788877665 3899
Q ss_pred EEECCCCeEEEEEecCCC---------CeEEEEEc-CCC---CEEEEEECCCeEEEEECCCCeEEEEEecCC--------
Q 003459 127 IWDIRKKGCIHTYKGHTR---------GVNAIRFT-PDG---RWVVSGGEDNTVKLWDLTAGKLLHDFKCHE-------- 185 (818)
Q Consensus 127 IwDl~~~~~i~~l~~h~~---------~V~~l~fs-pdg---~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~-------- 185 (818)
.+|..+++.+..++.... ...-+... .+| ..++.++.+|.++++|..+|+.+.......
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~ 361 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSV 361 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEE
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccc
Confidence 999999999988874321 11112222 467 467778899999999999999988765321
Q ss_pred ----C-CE--------------------------EEEEEeCCCCEEEEEe------------------------------
Q 003459 186 ----G-QI--------------------------QCIDFHPHEFLLATGS------------------------------ 204 (818)
Q Consensus 186 ----~-~I--------------------------~sv~fspdg~~Lasgs------------------------------ 204 (818)
+ ++ ..++++|+..++++..
T Consensus 362 ~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 441 (599)
T 1w6s_A 362 DLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPG 441 (599)
T ss_dssp CTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEEC
T ss_pred ccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccC
Confidence 1 11 1356666655554421
Q ss_pred ---------CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecCCceeccccccc
Q 003459 205 ---------ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEPIRCHDAVDVGW 268 (818)
Q Consensus 205 ---------~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~~~~~~~~~~~~ 268 (818)
.+|.|.-||+.+++.+...... .+...-.+...|..++.++.+ .++.||.++++.+..+....
T Consensus 442 p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~ 514 (599)
T 1w6s_A 442 PKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPS 514 (599)
T ss_dssp TTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CcCCcccCCCcCeEEEEECCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCC
Confidence 3478999999999988776422 112211223345566667655 59999999988876665543
No 263
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.47 E-value=0.00023 Score=77.77 Aligned_cols=233 Identities=10% Similarity=0.007 Sum_probs=145.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCCeEEEEE
Q 003459 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIHTY 139 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~~~i~~l 139 (818)
...|.+..++ .+|+.+. ...|+..++........+. .......++|++.+..|+... ..+.|+.+++........+
T Consensus 35 ~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 35 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCcccccccC-ceeEeec-ccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 3455555553 3444443 4568888887666555444 344578999998776666554 5678999998866544433
Q ss_pred ecCCCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEE-EEEeCC-CeEEEEECCC
Q 003459 140 KGHTRGVNAIRFTPDGRWVVS-GGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLL-ATGSAD-RTVKFWDLET 216 (818)
Q Consensus 140 ~~h~~~V~~l~fspdg~~L~s-gs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~L-asgs~D-g~I~IwDl~t 216 (818)
.........+++.+.+..|+. -...+.|.++++........+...-.....++++|.+..| ++-..+ +.|..+++..
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 333344578899875555544 4456789999987544333333334567899999965544 444444 7899998875
Q ss_pred CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEE
Q 003459 217 FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 217 ~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IW 294 (818)
..........-.....|+|++++..|+.+..+ .|..++++.......+.........+.+.++.++.+-...+.|..+
T Consensus 192 ~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 192 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSA 271 (349)
T ss_dssp CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEE
T ss_pred CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEE
Confidence 43332223334457899999988888877554 4777777653333233222333344555566666676777777777
Q ss_pred Ee
Q 003459 295 VV 296 (818)
Q Consensus 295 dv 296 (818)
+.
T Consensus 272 ~~ 273 (349)
T 3v64_C 272 NK 273 (349)
T ss_dssp ET
T ss_pred Ec
Confidence 73
No 264
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.46 E-value=5.1e-05 Score=88.92 Aligned_cols=237 Identities=12% Similarity=0.088 Sum_probs=152.8
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCCC----CeE-E-EEEcC--CCC-EEEEEE------CCCeEEEEECCCCeEEE
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHTS----GID-S-VSFDS--SEV-LVAAGA------ASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~----~V~-~-l~fsp--dg~-~Lasgs------~DG~I~IWDl~t~~~v~ 95 (818)
.++.++.|+.|..+|..+++.+........ .+. . +.... +++ .+++++ .+|.|+.+|..+|+.+.
T Consensus 119 ~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W 198 (582)
T 1flg_A 119 KVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIW 198 (582)
T ss_dssp EEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEE
T ss_pred EEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEe
Confidence 577788899999999999999887653320 111 0 11111 233 566654 37899999999999887
Q ss_pred EEcCCCCCe-----------------------------------------EEEEEeCCCCEEEEEEC-------------
Q 003459 96 TLTGHRSNC-----------------------------------------ISVDFHPFGEFFASGSL------------- 121 (818)
Q Consensus 96 ~l~~h~~~V-----------------------------------------~sv~fspdg~~Lasgs~------------- 121 (818)
........+ ..+++.|....++.+..
T Consensus 199 ~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~ 278 (582)
T 1flg_A 199 MRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAK 278 (582)
T ss_dssp EEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCT
T ss_pred ecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccC
Confidence 664311000 13456677777777663
Q ss_pred -------C----CcEEEEECCCCeEEEEEec--CC--------CCeEEEEEc-CCCC---EEEEEECCCeEEEEECCCCe
Q 003459 122 -------D----TNLKIWDIRKKGCIHTYKG--HT--------RGVNAIRFT-PDGR---WVVSGGEDNTVKLWDLTAGK 176 (818)
Q Consensus 122 -------D----g~I~IwDl~~~~~i~~l~~--h~--------~~V~~l~fs-pdg~---~L~sgs~Dg~I~IwDl~t~~ 176 (818)
| +.|..+|..+++.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+|+
T Consensus 279 gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 279 GGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp TSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred CCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCC
Confidence 2 5899999999999988863 21 1221 2222 4674 78889999999999999999
Q ss_pred EEEEEecCCC------------C-E--------------------------------EEEEEeCCCCEEEEEe-------
Q 003459 177 LLHDFKCHEG------------Q-I--------------------------------QCIDFHPHEFLLATGS------- 204 (818)
Q Consensus 177 ~i~~~~~h~~------------~-I--------------------------------~sv~fspdg~~Lasgs------- 204 (818)
.+..+..... . + ..++++|+..++++..
T Consensus 358 ~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~ 437 (582)
T 1flg_A 358 LQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDY 437 (582)
T ss_dssp EEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEE
T ss_pred EecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceee
Confidence 9887764320 0 0 1245566544444432
Q ss_pred --------------------------CCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003459 205 --------------------------ADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 205 --------------------------~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (818)
.+|.|.-||+.+++.+.+..... ++..-.+...|.++++|+.+ .++.||.++
T Consensus 438 ~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~t 516 (582)
T 1flg_A 438 WTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKS 516 (582)
T ss_dssp EECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTT
T ss_pred ecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCC
Confidence 25789999999999887654322 22221222245567767655 599999999
Q ss_pred Cceecccccccc
Q 003459 258 IRCHDAVDVGWS 269 (818)
Q Consensus 258 ~~~~~~~~~~~~ 269 (818)
++.+..+.....
T Consensus 517 G~~lW~~~~~~g 528 (582)
T 1flg_A 517 GKELWKFQTGSG 528 (582)
T ss_dssp CCEEEEEECSSC
T ss_pred CCEEEEecCCCC
Confidence 988776665543
No 265
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.43 E-value=0.00044 Score=74.24 Aligned_cols=226 Identities=8% Similarity=-0.035 Sum_probs=140.2
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCC----CeEEEEEecCCCCeE
Q 003459 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRK----KGCIHTYKGHTRGVN 147 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~----~~~i~~l~~h~~~V~ 147 (818)
+|+.+. ...|+..|+...+....+. .......++|++.+..|+.+. .++.|+.+++.. ......+........
T Consensus 3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 344443 4569999998877665555 345678999998776655554 468999999875 222222322223467
Q ss_pred EEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC-C-CeEEEEECCCCeEEEEeC
Q 003459 148 AIRFTPDGRWVVSG-GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-D-RTVKFWDLETFELIGSAG 224 (818)
Q Consensus 148 ~l~fspdg~~L~sg-s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~-D-g~I~IwDl~t~~~i~~~~ 224 (818)
.+++.+.+..|+.+ ...+.|.++|+........+.........++++|.+..|+.+.. . +.|..+++..........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~ 160 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence 89998755555544 56789999998754433333333456789999996555555443 3 689988886433322222
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeccccc--cccceeeeeecCCCEEEEEEcCCeEEEEEecCCC
Q 003459 225 PETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDV--GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~--~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
..-.....|+|++++..|+.+... .|..++++.......... .......+...++.++.+-...+.|..++..+++
T Consensus 161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 234567899999988888877554 477888764332222221 1222334455566677777777888888865444
No 266
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.42 E-value=7.9e-05 Score=77.80 Aligned_cols=201 Identities=10% Similarity=0.158 Sum_probs=137.5
Q ss_pred EEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 11 EFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS-GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 11 ~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~-~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
.+.+-.+.+..++|+|+++.++++...++.|...|.. ++.+..+. +-......|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4445667899999999878888888889999999987 88777764 223568899999988877776567889999886
Q ss_pred CCe---EEEEEc------CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC---CCeEEEEEe-------cCCCCeEEEE
Q 003459 90 EAK---IVRTLT------GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---KKGCIHTYK-------GHTRGVNAIR 150 (818)
Q Consensus 90 t~~---~v~~l~------~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~---~~~~i~~l~-------~h~~~V~~l~ 150 (818)
... .+.... ........++|.|.++.|+++.......+|.+. ....+..+. .+...+..++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 543 223322 123456899999999877777665544555443 111122221 1234578999
Q ss_pred EcCC-CCEEEEEECCCeEEEEECCCCeEEEEEecCC---------CCEEEEEEeCCCCEEEEEeCCCeEEEEEC
Q 003459 151 FTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE---------GQIQCIDFHPHEFLLATGSADRTVKFWDL 214 (818)
Q Consensus 151 fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~---------~~I~sv~fspdg~~Lasgs~Dg~I~IwDl 214 (818)
++|. +++++.......|.++|.. |+.+..+.-.. ..--.|+|.++|+++++ ++-+.++.|.-
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 9995 4555566666789999966 66666554322 25689999999985555 67777776654
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.41 E-value=9.8e-06 Score=96.29 Aligned_cols=267 Identities=13% Similarity=0.083 Sum_probs=154.7
Q ss_pred EEEEeeCCCcEEEEEeCCC-----------eEEEEECCCCceE--EEec-CCCCCeEEEEEcCCCCEEEEEEC-CCeEEE
Q 003459 21 CLKIGRKSSRVLVTGGEDH-----------KVNLWAIGKPNAI--LSLS-GHTSGIDSVSFDSSEVLVAAGAA-SGTIKL 85 (818)
Q Consensus 21 ~lafsp~~~~lLatgs~Dg-----------~V~lWdl~~~~~i--~~l~-~h~~~V~~l~fspdg~~Lasgs~-DG~I~I 85 (818)
++++.+.++++++.|+.+. .+.+||..+++.. ..+. .+.....++++..++++++.|+. ++.+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 4566664677888887543 5889998776532 2222 23333445778889999999884 468999
Q ss_pred EECCCCeEEEEEcCCCC-CeEEEEEeCCCCEEEEEE-CC-----CcEEEEECCCCeEEEEE----ecCCCCeEEEEEcCC
Q 003459 86 WDLEEAKIVRTLTGHRS-NCISVDFHPFGEFFASGS-LD-----TNLKIWDIRKKGCIHTY----KGHTRGVNAIRFTPD 154 (818)
Q Consensus 86 WDl~t~~~v~~l~~h~~-~V~sv~fspdg~~Lasgs-~D-----g~I~IwDl~~~~~i~~l----~~h~~~V~~l~fspd 154 (818)
||..+.+-...-..+.. .-.+++..++++.++.|+ .+ ..+.+||..+.+....- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 99987754432221211 223556667899988888 34 47999999887644320 000000000112234
Q ss_pred CCEEEEEECC---------CeEEEEECCCCeEEEEEecCC---------CCEEEEEEeC-CCCEEEEEeCCC--------
Q 003459 155 GRWVVSGGED---------NTVKLWDLTAGKLLHDFKCHE---------GQIQCIDFHP-HEFLLATGSADR-------- 207 (818)
Q Consensus 155 g~~L~sgs~D---------g~I~IwDl~t~~~i~~~~~h~---------~~I~sv~fsp-dg~~Lasgs~Dg-------- 207 (818)
++.++.|+.+ ..+..||..+.........+. ..-.++.|.. +++++++|+.++
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555544 356788988765443332221 1234455543 678888887543
Q ss_pred ---eEEEEECCCCeEEEEe--CCCCCC-eeEEEEeCCCCEEEEEEC------------CCEEEEEecCCceecccccccc
Q 003459 208 ---TVKFWDLETFELIGSA--GPETSG-VRCLTFNPDGRTLLCGLH------------ESLKVFSWEPIRCHDAVDVGWS 269 (818)
Q Consensus 208 ---~I~IwDl~t~~~i~~~--~~~~~~-I~sl~fspdg~~Lasgs~------------d~I~Vwd~~~~~~~~~~~~~~~ 269 (818)
.|.+||..+..-.... ...... -.++++.++|+++++|+. ..+.+||..+.+....-.....
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~ 509 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIV 509 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSC
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCc
Confidence 6888998876544332 112222 245567789999998863 2478888766554322211111
Q ss_pred --cee-eeeecCCCEEEEEEc
Q 003459 270 --RLS-DLNVHEGKLLGCSYN 287 (818)
Q Consensus 270 --~v~-~l~~~~g~lLatg~~ 287 (818)
... .+..++|++++.|+.
T Consensus 510 R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 510 RVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCTTEEEEECTTSCEEEEECC
T ss_pred cccccHhhcCCCcEEEecCCC
Confidence 111 222368888888875
No 268
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.41 E-value=0.00077 Score=72.66 Aligned_cols=277 Identities=10% Similarity=0.023 Sum_probs=156.6
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec----CCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS----GHTSGIDSVSFDSSEVLVAAGAASGT 82 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~----~h~~~V~~l~fspdg~~Lasgs~DG~ 82 (818)
|+...+ .....+.+|.|.+ .+..++ ++.+|.| ++..+.++.-.... .....+.+|.|.+ +..++ ++..|.
T Consensus 27 W~~~~~-~~~~~~~~v~~~~-~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~ 100 (327)
T 2xbg_A 27 WEAIQL-PTTATILDMSFID-RHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPI 100 (327)
T ss_dssp EEEEEC-SCSSCEEEEEESS-SSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTE
T ss_pred ceEeec-CCCCcEEEEEECC-CCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCe
Confidence 444333 3345799999975 455566 4567765 33333343322222 1244688999986 44444 455675
Q ss_pred EEEEECCCCeEEEEEc---CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe-EEEEEecCCCCeEEEEEcCCCCEE
Q 003459 83 IKLWDLEEAKIVRTLT---GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNAIRFTPDGRWV 158 (818)
Q Consensus 83 I~IWDl~t~~~v~~l~---~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~-~i~~l~~h~~~V~~l~fspdg~~L 158 (818)
|.. ..+.|+....+. .+...+..+.+.+++..++++ .+|.|+.- ...++ .......+...+..+.+.+++.++
T Consensus 101 i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~ 177 (327)
T 2xbg_A 101 MLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYV 177 (327)
T ss_dssp EEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEE
T ss_pred EEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEE
Confidence 544 323343333322 233457788887766655555 56655332 12232 222233455678999999998877
Q ss_pred EEEECCCeEEEEEC--CCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC-C---CCCCeeE
Q 003459 159 VSGGEDNTVKLWDL--TAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-P---ETSGVRC 232 (818)
Q Consensus 159 ~sgs~Dg~I~IwDl--~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~-~---~~~~I~s 232 (818)
+++...+..+-+|- .+.+.+. ......+..+.+.+++.+++. +.+|.+++++...++.-..+. + ....+.+
T Consensus 178 ~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~ 254 (327)
T 2xbg_A 178 AVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD 254 (327)
T ss_dssp EEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred EEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEE
Confidence 66644333344442 3333332 234567889999998876654 567888877544344333322 1 2245889
Q ss_pred EEEeCCCCEEEEEECCCEEEEEecCCceecccccc---ccceeeeeecCCCEEEEEEcCCeEEEEEe
Q 003459 233 LTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVG---WSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 233 l~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~---~~~v~~l~~~~g~lLatg~~Dg~V~IWdv 296 (818)
+.+.+++.+++++..+.+ .+..+.++....+... ...+..+.+.++..+++++.+|.|.-++-
T Consensus 255 v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 255 LAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred EEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 999998888888876655 5555655554433221 12344554444555667778887766543
No 269
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.39 E-value=0.00025 Score=77.44 Aligned_cols=208 Identities=10% Similarity=-0.013 Sum_probs=134.4
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~t~~~ 93 (818)
....+..++|.+.++.++++-...+.|..+++........+.........+++.+.+..| ++-...+.|.++++.....
T Consensus 71 ~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~ 150 (349)
T 3v64_C 71 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 150 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence 334578899998777777777778899999987655444443333456789998755544 4445568899999875543
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEEC-C-CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 003459 94 VRTLTGHRSNCISVDFHPFGEFFASGSL-D-TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLW 170 (818)
Q Consensus 94 v~~l~~h~~~V~sv~fspdg~~Lasgs~-D-g~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~Iw 170 (818)
...+.........+++.|.+.+|+.... . +.|..+++............-.....++|+|++..|+.+. ..+.|..+
T Consensus 151 ~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 151 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 3334444456789999997776665544 3 6788888764332222222334578999998777776665 45689999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
|+........+.........+++ ..+.++++-...+.|..+|..+++.+..+
T Consensus 231 ~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 282 (349)
T 3v64_C 231 NLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 282 (349)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEe
Confidence 98754333333333445677777 34555566556778888876555544443
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.38 E-value=6.7e-05 Score=90.63 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=100.4
Q ss_pred CeEEEEEc-CCCCEEEEEEC-CC----eEEEEECCCC-eEEE-EEcCCCCCeEEEEEeCCCCEEEEEECC-----CcEEE
Q 003459 61 GIDSVSFD-SSEVLVAAGAA-SG----TIKLWDLEEA-KIVR-TLTGHRSNCISVDFHPFGEFFASGSLD-----TNLKI 127 (818)
Q Consensus 61 ~V~~l~fs-pdg~~Lasgs~-DG----~I~IWDl~t~-~~v~-~l~~h~~~V~sv~fspdg~~Lasgs~D-----g~I~I 127 (818)
.+...+|+ |||++|+.+.. +| .|+++|+.++ +.+. .+. .....+.|+|||+.|+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998886543 23 5999999998 6321 111 113468899999988777665 36888
Q ss_pred EECCCCe--EEEEEe-cCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCC--eE-EEEE-ecCCCCEEEEEEeCCC
Q 003459 128 WDIRKKG--CIHTYK-GHTRGVNAIRFTPDGRWVVSGGE---DNTVKLWDLTAG--KL-LHDF-KCHEGQIQCIDFHPHE 197 (818)
Q Consensus 128 wDl~~~~--~i~~l~-~h~~~V~~l~fspdg~~L~sgs~---Dg~I~IwDl~t~--~~-i~~~-~~h~~~I~sv~fspdg 197 (818)
+++.++. ....+. ........+.|+|||++|+.... ...|+++|+.++ +. +..+ .........+.|+.++
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~ 331 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTS 331 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTT
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCC
Confidence 9987764 223333 22345678899999999887663 346889999875 22 1333 2334556667766555
Q ss_pred CEEEEEeCC----CeEEEEECCC
Q 003459 198 FLLATGSAD----RTVKFWDLET 216 (818)
Q Consensus 198 ~~Lasgs~D----g~I~IwDl~t 216 (818)
.+++....+ ..|..+|+.+
T Consensus 332 ~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 332 HLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EEEEEECTTTCTTCEEEEEETTS
T ss_pred EEEEEeCCCCCCCcEEEEEcCCC
Confidence 555555443 3677888765
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.36 E-value=9.6e-05 Score=77.13 Aligned_cols=200 Identities=14% Similarity=0.246 Sum_probs=135.5
Q ss_pred EecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEEEEcC-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECC
Q 003459 54 SLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131 (818)
Q Consensus 54 ~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~~l~~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~ 131 (818)
.+.+-...+..++|+|++. ++++...++.|...|.. ++.++.+.- -......|++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4556667899999999766 55557778999999998 888888742 23567889999888776766677889999886
Q ss_pred CCeE---EEEEe------cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---CCeEEEEEe-------cCCCCEEEEE
Q 003459 132 KKGC---IHTYK------GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLT---AGKLLHDFK-------CHEGQIQCID 192 (818)
Q Consensus 132 ~~~~---i~~l~------~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~---t~~~i~~~~-------~h~~~I~sv~ 192 (818)
.... +.... ..+.....++|+|+++.|+++.+.....+|.+. ....+..+. .+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 5442 22222 123456899999999888887766554454443 111122221 1234578999
Q ss_pred EeCC-CCEEEEEeCCCeEEEEECCCCeEEEEeCCCC---------CCeeEEEEeCCCCEEEEEECCCEEEEEecC
Q 003459 193 FHPH-EFLLATGSADRTVKFWDLETFELIGSAGPET---------SGVRCLTFNPDGRTLLCGLHESLKVFSWEP 257 (818)
Q Consensus 193 fspd-g~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~---------~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~ 257 (818)
++|. +.+++.....+.|..+|.+ ++.+..+.-.. ...-.|+|.++|++.+++ +.. .+|-+..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E~n-~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-EPN-RFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-TTT-EEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-CCc-eEEEEEe
Confidence 9996 6677777788899999976 55555543221 256899999999866664 544 4565543
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.35 E-value=0.00073 Score=72.47 Aligned_cols=207 Identities=11% Similarity=0.029 Sum_probs=133.4
Q ss_pred cCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC----CceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEEC
Q 003459 14 AHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----PNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDL 88 (818)
Q Consensus 14 ~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~----~~~i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl 88 (818)
.....+.+++|.+.++.++++-..++.|..+++.. ......+...-....++++++.+..| ++-...+.|.++++
T Consensus 27 ~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~ 106 (316)
T 1ijq_A 27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106 (316)
T ss_dssp CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeC
Confidence 34456789999987777777777789999999865 22222233222456889998755544 44456789999998
Q ss_pred CCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC--CcEEEEECCCCeEEEEE-ecCCCCeEEEEEcCCCCEEEEEE-CC
Q 003459 89 EEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD--TNLKIWDIRKKGCIHTY-KGHTRGVNAIRFTPDGRWVVSGG-ED 164 (818)
Q Consensus 89 ~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D--g~I~IwDl~~~~~i~~l-~~h~~~V~~l~fspdg~~L~sgs-~D 164 (818)
........+.........+++.|.+.+|+.+... +.|..+++... ....+ ...-.....+++++++..|+.+. ..
T Consensus 107 ~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~ 185 (316)
T 1ijq_A 107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185 (316)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCC
Confidence 7554433344344567899999977766665543 68888887643 33333 22335578999999877777665 45
Q ss_pred CeEEEEECCCCeEEEEE-ec--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 165 NTVKLWDLTAGKLLHDF-KC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~-~~--h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
+.|..+|+.... ...+ .. .......+++. .+.++++-...+.|..+|..+++.+..+
T Consensus 186 ~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 186 HSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp TEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 689999987432 2222 21 22345677775 4556666666788888887766544443
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.32 E-value=0.00019 Score=79.54 Aligned_cols=209 Identities=10% Similarity=-0.015 Sum_probs=137.0
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCeE
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLV-AAGAASGTIKLWDLEEAKI 93 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~L-asgs~DG~I~IWDl~t~~~ 93 (818)
....+..++|.+.++.++++-...+.|..|+.........+.........+++++.+..| ++-...+.|.++++.....
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~ 193 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR 193 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence 345678899998777777777778899999987655444443333455788998755544 4444567899888875543
Q ss_pred EEEEcCCCCCeEEEEEeCCCCEEEEEEC-C-CcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEE
Q 003459 94 VRTLTGHRSNCISVDFHPFGEFFASGSL-D-TNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLW 170 (818)
Q Consensus 94 v~~l~~h~~~V~sv~fspdg~~Lasgs~-D-g~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~Iw 170 (818)
...+.........+++.|.+.+|+.... . +.|..+++............-.....|+|+|++..|+.+. ..+.|..+
T Consensus 194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~ 273 (386)
T 3v65_B 194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 273 (386)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence 3344444456789999998776666554 3 6788888865433333333344578999998777676665 45679999
Q ss_pred ECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC
Q 003459 171 DLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG 224 (818)
Q Consensus 171 Dl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~ 224 (818)
|+........+.........+++ ..+.++++-...+.|..+|..+++.+..+.
T Consensus 274 d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 274 NLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp CTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 98754333333333445677877 445566666667888888866665544443
No 274
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.32 E-value=0.00027 Score=78.26 Aligned_cols=234 Identities=10% Similarity=0.006 Sum_probs=145.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCCeEEEEEec
Q 003459 63 DSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKKGCIHTYKG 141 (818)
Q Consensus 63 ~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~~~i~~l~~ 141 (818)
.|.+..+ ..+|+.+. ...|+.+++........+. .......++|.+.+..|+... ..+.|+.|++........+..
T Consensus 80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 80 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp CEEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred eECCccc-cceeEeec-CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 3444444 33454443 4678889988766555444 345578999998766655554 567899999886654444433
Q ss_pred CCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe-CC-CeEEEEECCCCe
Q 003459 142 HTRGVNAIRFTPDGRWVVSG-GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-AD-RTVKFWDLETFE 218 (818)
Q Consensus 142 h~~~V~~l~fspdg~~L~sg-s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs-~D-g~I~IwDl~t~~ 218 (818)
.......+++.+.+..|+.+ ...+.|.++++........+.........++++|.+..|+... .. +.|..+++....
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~ 236 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG 236 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence 33345678888765555544 4567899988875443333333345678999998765555444 44 689999887544
Q ss_pred EEEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEe
Q 003459 219 LIGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVV 296 (818)
Q Consensus 219 ~i~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdv 296 (818)
........-.....|+|++++..|+.+... .|..++++.......+.........+.+.++.++.+-...+.|..++.
T Consensus 237 ~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~ 316 (386)
T 3v65_B 237 RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANK 316 (386)
T ss_dssp CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEEC
Confidence 333333334457899999988888877554 366666654333333332333334455566677777777788888874
Q ss_pred cCC
Q 003459 297 DIS 299 (818)
Q Consensus 297 d~~ 299 (818)
..+
T Consensus 317 ~~G 319 (386)
T 3v65_B 317 FTG 319 (386)
T ss_dssp TTC
T ss_pred CCC
Confidence 333
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.31 E-value=0.0005 Score=73.09 Aligned_cols=201 Identities=9% Similarity=0.001 Sum_probs=122.3
Q ss_pred ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC--cEEE
Q 003459 50 NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT--NLKI 127 (818)
Q Consensus 50 ~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg--~I~I 127 (818)
+.+..+... ....+++|+++++++++-..++.|..||.... ....+. .......+++.++|+++++..... .|..
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 344445432 56789999999987766667899999997754 333333 235688999999999665554332 4777
Q ss_pred EECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE-EEEEec---------CCCCEEEEEEeCC
Q 003459 128 WDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL-LHDFKC---------HEGQIQCIDFHPH 196 (818)
Q Consensus 128 wDl~~~~~i~~l~~-h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~-i~~~~~---------h~~~I~sv~fspd 196 (818)
+|..+++....... .......++..+++..+++-..++.|+++|...++. +..... .-...+.+ +|+
T Consensus 100 ~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~d 177 (306)
T 2p4o_A 100 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRF 177 (306)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEE
T ss_pred EcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcC
Confidence 78777765433221 223345556555554444444588999999876532 221110 11234555 788
Q ss_pred CCEEEEE-eCCCeEEEEECCC-CeE--EEEeCCCCCCeeEEEEeCCCCEEEEEEC-CCEEEEEec
Q 003459 197 EFLLATG-SADRTVKFWDLET-FEL--IGSAGPETSGVRCLTFNPDGRTLLCGLH-ESLKVFSWE 256 (818)
Q Consensus 197 g~~Lasg-s~Dg~I~IwDl~t-~~~--i~~~~~~~~~I~sl~fspdg~~Lasgs~-d~I~Vwd~~ 256 (818)
+..|+.+ ...+.|..||+.. ++. ...+.. ......++++++|+++++... +.|.+|+.+
T Consensus 178 g~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 178 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 7655554 4578999999874 321 111110 134578999999987655443 467777754
No 276
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.28 E-value=0.0011 Score=73.84 Aligned_cols=221 Identities=10% Similarity=0.010 Sum_probs=142.9
Q ss_pred ecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEE
Q 003459 13 VAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWD 87 (818)
Q Consensus 13 ~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~----~~i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWD 87 (818)
......+..++|++.++.++++-...+.|+.+++... .....+...-.....+++.+.+. +.++-...+.|.+.+
T Consensus 108 ~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~ 187 (400)
T 3p5b_L 108 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 187 (400)
T ss_dssp ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEe
Confidence 3455678899999877777777777889999988642 23333333445678999988444 444545578999999
Q ss_pred CCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-C
Q 003459 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-D 164 (818)
Q Consensus 88 l~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~-D 164 (818)
++.......+.........|++.|.+.+|+.... .+.|...++............-.....|++++++..|+.+.. .
T Consensus 188 ~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~ 267 (400)
T 3p5b_L 188 TKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267 (400)
T ss_dssp TTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence 8866554445444456789999997777766653 368999998754433333333356789999998777777654 5
Q ss_pred CeEEEEECCCCeEEEEEec--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003459 165 NTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~--h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~ 234 (818)
+.|..+|+........... .......+++. .+.++++-...+.|..+|..+++.+..+........++.
T Consensus 268 ~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~ 338 (400)
T 3p5b_L 268 HSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 338 (400)
T ss_dssp TEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred CEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEE
Confidence 7899999875433222222 22345667763 345556666677888888777765555543333344443
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.27 E-value=5.9e-05 Score=91.08 Aligned_cols=192 Identities=9% Similarity=0.025 Sum_probs=115.1
Q ss_pred CEEEEEEe-eCCCcEEEEEeCCC----eEEEEECCCC-ceEE-EecCCCCCeEEEEEcCCCCEEEEEECC-----CeEEE
Q 003459 18 TVNCLKIG-RKSSRVLVTGGEDH----KVNLWAIGKP-NAIL-SLSGHTSGIDSVSFDSSEVLVAAGAAS-----GTIKL 85 (818)
Q Consensus 18 ~V~~lafs-p~~~~lLatgs~Dg----~V~lWdl~~~-~~i~-~l~~h~~~V~~l~fspdg~~Lasgs~D-----G~I~I 85 (818)
.+...+|| |++..++++...+| .|+++|+.++ +.+. .+. .....+.|+||++.|+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 96555554554444 4999999887 5321 111 113468899999888777665 36888
Q ss_pred EECCCCe--EEEEEc-CCCCCeEEEEEeCCCCEEEEEEC---CCcEEEEECCCC--eE-EEEE-ecCCCCeEEEEEcCCC
Q 003459 86 WDLEEAK--IVRTLT-GHRSNCISVDFHPFGEFFASGSL---DTNLKIWDIRKK--GC-IHTY-KGHTRGVNAIRFTPDG 155 (818)
Q Consensus 86 WDl~t~~--~v~~l~-~h~~~V~sv~fspdg~~Lasgs~---Dg~I~IwDl~~~--~~-i~~l-~~h~~~V~~l~fspdg 155 (818)
+++.++. ....+. .+......+.|+|||++|+..+. ...|+++|+.++ .. +..+ .........+.|+. |
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 9988764 223332 23344668899999998887653 347889999875 23 1333 33344556666554 5
Q ss_pred CEEEEEEC-C----CeEEEEECCCCeEEEE-EecCCC--CEEEEEEeCCCCEEEEEeCCCe--EEEEEC
Q 003459 156 RWVVSGGE-D----NTVKLWDLTAGKLLHD-FKCHEG--QIQCIDFHPHEFLLATGSADRT--VKFWDL 214 (818)
Q Consensus 156 ~~L~sgs~-D----g~I~IwDl~t~~~i~~-~~~h~~--~I~sv~fspdg~~Lasgs~Dg~--I~IwDl 214 (818)
..|+..+. + ..|..+|+.++..... +..+.. .+..+.+. .+.++++...++. |+++|+
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 55554443 3 2678888765211122 222333 34555554 3445666667775 556675
No 278
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.25 E-value=0.0011 Score=73.89 Aligned_cols=226 Identities=8% Similarity=-0.028 Sum_probs=144.8
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCC----eEEEEEecCCCCeE
Q 003459 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKK----GCIHTYKGHTRGVN 147 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~----~~i~~l~~h~~~V~ 147 (818)
+|+.+. ...|+..++........+. ....+..++|++.+..|+.+. ..+.|+.+++... .....+........
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 455544 5789999998766555444 456788999998777666655 4678999998652 22333333445678
Q ss_pred EEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC--CCeEEEEECCCCeEEEEeC
Q 003459 148 AIRFTPDGRWVV-SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA--DRTVKFWDLETFELIGSAG 224 (818)
Q Consensus 148 ~l~fspdg~~L~-sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~--Dg~I~IwDl~t~~~i~~~~ 224 (818)
.+++.+.+..|+ +-...+.|.+.|+........+.........|+++|.+.+|+.... .+.|...++..........
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~ 242 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 242 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence 899998544454 4455788999998865544444434456789999996555555542 3789999987544333333
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeccccc--cccceeeeeecCCCEEEEEEcCCeEEEEEecCCC
Q 003459 225 PETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDV--GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~--~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
..-.....|+|++++..|+.+... .|..++++.......... .+.....+...++.++.+-...+.|..++...++
T Consensus 243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCC
T ss_pred CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCC
Confidence 334567999999988888877554 477777765433333221 2233334555666677777777888888744443
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.00034 Score=78.69 Aligned_cols=234 Identities=12% Similarity=0.120 Sum_probs=138.2
Q ss_pred CEEEEEEee-CCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC-C----eEEEEECCCC
Q 003459 18 TVNCLKIGR-KSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS-G----TIKLWDLEEA 91 (818)
Q Consensus 18 ~V~~lafsp-~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D-G----~I~IWDl~t~ 91 (818)
....|+|+| +++. |+.+...+.|..+|+..+...... ........++|++++++|+++... + .+..++. .+
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CC
Confidence 457899997 3555 444444488999998765544433 345568899999999966666542 1 2333443 22
Q ss_pred eEE--EEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEEec-CCCCeEEEEEcCCCCEEEEEE-CCCe
Q 003459 92 KIV--RTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFTPDGRWVVSGG-EDNT 166 (818)
Q Consensus 92 ~~v--~~l~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~-h~~~V~~l~fspdg~~L~sgs-~Dg~ 166 (818)
... ..+. .......++++| ++.++++-..++.|+.||...+........ .......++|+|+|++|+.+. ..+.
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 211 2222 123456788999 566555555678999999987654222221 223467899999999666554 5678
Q ss_pred EEEEECCC--CeE--EEEEecC---------------CCCEE-EEEEe--------CCCCEEEEEeCCCeEEEEECCCCe
Q 003459 167 VKLWDLTA--GKL--LHDFKCH---------------EGQIQ-CIDFH--------PHEFLLATGSADRTVKFWDLETFE 218 (818)
Q Consensus 167 I~IwDl~t--~~~--i~~~~~h---------------~~~I~-sv~fs--------pdg~~Lasgs~Dg~I~IwDl~t~~ 218 (818)
|..++... +.. +..+.+. -.... .++.. +++.++++-...+.|+.++ ..+.
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSE
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCc
Confidence 99877653 322 1222211 01123 45543 3456666656678899998 4565
Q ss_pred EEEEeCC----C-------------CCCeeEEEEeCCCCEEEEEECC--CEEEEEec
Q 003459 219 LIGSAGP----E-------------TSGVRCLTFNPDGRTLLCGLHE--SLKVFSWE 256 (818)
Q Consensus 219 ~i~~~~~----~-------------~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~ 256 (818)
....... . -.....|++++++..|+++..+ .|+.++.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 4433321 0 1147899999964555555433 46666543
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.16 E-value=0.00054 Score=77.14 Aligned_cols=234 Identities=11% Similarity=0.038 Sum_probs=138.7
Q ss_pred CEEEEEEeeC--CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCC
Q 003459 18 TVNCLKIGRK--SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASG-----TIKLWDLEE 90 (818)
Q Consensus 18 ~V~~lafsp~--~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG-----~I~IWDl~t 90 (818)
...+++|+|+ ++. |+.+...+.|+.++..++..... ........+++|+++++ |+.+...+ .+..++...
T Consensus 140 ~P~gvavd~~s~~g~-Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDD-LYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCE-EEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCE-EEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence 4678999984 455 44444448899999876665543 33455689999999999 44544322 133333222
Q ss_pred CeE-EEEEcCCCCCeEEEEEeC-CCCEEEEEECCCcEEEEECCCCeEEEEE-ec-CCCCeEEEEEcCCCCEEEEEE-CCC
Q 003459 91 AKI-VRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIHTY-KG-HTRGVNAIRFTPDGRWVVSGG-EDN 165 (818)
Q Consensus 91 ~~~-v~~l~~h~~~V~sv~fsp-dg~~Lasgs~Dg~I~IwDl~~~~~i~~l-~~-h~~~V~~l~fspdg~~L~sgs-~Dg 165 (818)
+.. ...+. .......++++| ++.++++-..++.|+.+|..++.....+ .. ....-..++|+|+|++|+.+. ..+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 111 01111 223456788999 5655555556788999998877653332 21 122234799999999666665 457
Q ss_pred eEEEEECC--CCeE--EEEEecC---------------CCCEEEEEE---------eCCCCEEEEEeCCCeEEEEECCCC
Q 003459 166 TVKLWDLT--AGKL--LHDFKCH---------------EGQIQCIDF---------HPHEFLLATGSADRTVKFWDLETF 217 (818)
Q Consensus 166 ~I~IwDl~--t~~~--i~~~~~h---------------~~~I~sv~f---------spdg~~Lasgs~Dg~I~IwDl~t~ 217 (818)
.|+.+|.. ++.. ...+.+. -.....+++ .+++.++++-...+.|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 89998865 3321 1122111 123567899 677777777777889999985 55
Q ss_pred eEEEEeCCC-----------------CCCeeEEEEe-CCCCEEEEEECC-CEEEEEec
Q 003459 218 ELIGSAGPE-----------------TSGVRCLTFN-PDGRTLLCGLHE-SLKVFSWE 256 (818)
Q Consensus 218 ~~i~~~~~~-----------------~~~I~sl~fs-pdg~~Lasgs~d-~I~Vwd~~ 256 (818)
......... -.....|+++ ++|.++++-..+ .|+.++.+
T Consensus 375 ~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 375 RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 544333210 1236789999 555444443333 46666543
No 281
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.09 E-value=0.001 Score=71.68 Aligned_cols=227 Identities=11% Similarity=0.017 Sum_probs=137.3
Q ss_pred EEEEEECCCeEEEEECCCCe--EEEEEcCCCCCeEEEEEeCCCCEEEEE-ECCCcEEEEECCCCeE-EEEEecCCCCeEE
Q 003459 73 LVAAGAASGTIKLWDLEEAK--IVRTLTGHRSNCISVDFHPFGEFFASG-SLDTNLKIWDIRKKGC-IHTYKGHTRGVNA 148 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~--~v~~l~~h~~~V~sv~fspdg~~Lasg-s~Dg~I~IwDl~~~~~-i~~l~~h~~~V~~ 148 (818)
+|+.+ ....|+.+++.... ....+. .......++|.+.+..|+.. ...+.|+.+++..... ...+...-.....
T Consensus 6 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 6 LLLYA-NRRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEE-CEEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred EEEEE-ccCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence 34443 35678999988653 222222 22346789999866655554 4567899999876532 1122222234667
Q ss_pred EEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCeEEEEeCC
Q 003459 149 IRFTPDGRWVV-SGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS--ADRTVKFWDLETFELIGSAGP 225 (818)
Q Consensus 149 l~fspdg~~L~-sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs--~Dg~I~IwDl~t~~~i~~~~~ 225 (818)
+++.+.+..|+ +-...+.|.++++........+.........+++.|.+.+|+... ..+.|..+++...........
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence 88987555454 444567899999875433333333445678999999755555554 357899998874332222223
Q ss_pred CCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCc
Q 003459 226 ETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRI 301 (818)
Q Consensus 226 ~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~ 301 (818)
.-.....|+|++++..|+.+... .|..++++.................+.+.++.++.+-...+.|..++...++.
T Consensus 164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 33456899999988888877554 47777776433322222222333344555666666766778888888765554
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.09 E-value=0.001 Score=71.66 Aligned_cols=205 Identities=8% Similarity=-0.017 Sum_probs=132.1
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-EEEecCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCeEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-ILSLSGHTSGIDSVSFDSSEV-LVAAGAASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~-i~~l~~h~~~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~~~v~ 95 (818)
.+.+++|.+.++.++++-...+.|..++...... ...+...-.....+++.+.+. ++++-...+.|.++++.......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 4668899987777777777788999999865532 112222223567899987554 44444557889999987544333
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEC
Q 003459 96 TLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDL 172 (818)
Q Consensus 96 ~l~~h~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~IwDl 172 (818)
.+.........+++.|.+.+|+.+.. .+.|..+++............-.....++|++++..|+.+. ..+.|..+|+
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL 195 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence 33344556789999998777766663 57888888764332222222334568999999777777665 4578999998
Q ss_pred CCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 173 TAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 173 ~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
........+.........+++. .+.++++-...+.|..+|..+++....+
T Consensus 196 dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 196 DGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp TSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred CCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 7433222222233455677775 3445556556778888888776654443
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.98 E-value=3.7e-05 Score=91.34 Aligned_cols=240 Identities=11% Similarity=0.109 Sum_probs=137.7
Q ss_pred EEEEcC-CCCEEEEEECCC-----------eEEEEECCCCeE--EEEEc-CCCCCeEEEEEeCCCCEEEEEEC-CCcEEE
Q 003459 64 SVSFDS-SEVLVAAGAASG-----------TIKLWDLEEAKI--VRTLT-GHRSNCISVDFHPFGEFFASGSL-DTNLKI 127 (818)
Q Consensus 64 ~l~fsp-dg~~Lasgs~DG-----------~I~IWDl~t~~~--v~~l~-~h~~~V~sv~fspdg~~Lasgs~-Dg~I~I 127 (818)
++++.+ ++++++.|+.++ .+.+||..+++. +..+. .+...+.++++..++..+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556666 888888887643 588999987653 22232 23344556788889999998884 458999
Q ss_pred EECCCCeEEEEEecCC-CCeEEEEEcCCCCEEEEEE-CC-----CeEEEEECCCCeEEEEE----ecCCCCEEEEEEeCC
Q 003459 128 WDIRKKGCIHTYKGHT-RGVNAIRFTPDGRWVVSGG-ED-----NTVKLWDLTAGKLLHDF----KCHEGQIQCIDFHPH 196 (818)
Q Consensus 128 wDl~~~~~i~~l~~h~-~~V~~l~fspdg~~L~sgs-~D-----g~I~IwDl~t~~~i~~~----~~h~~~I~sv~fspd 196 (818)
||..+.+....-..+. ..-.++++.++|+.++.|+ .+ ..+.+||..+++-...- ......-....+..+
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~ 349 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSD 349 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTT
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecC
Confidence 9998776543322121 1223556667899999998 34 46899999877533220 000000000112244
Q ss_pred CCEEEEEeCC---------CeEEEEECCCCeEEEEeCCC---------CCCeeEEEEeC-CCCEEEEEECC---------
Q 003459 197 EFLLATGSAD---------RTVKFWDLETFELIGSAGPE---------TSGVRCLTFNP-DGRTLLCGLHE--------- 248 (818)
Q Consensus 197 g~~Lasgs~D---------g~I~IwDl~t~~~i~~~~~~---------~~~I~sl~fsp-dg~~Lasgs~d--------- 248 (818)
+..++.|+.+ ..+..||..+.......... ...-.++.|.. +++++++|+.+
T Consensus 350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~ 429 (656)
T 1k3i_A 350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT 429 (656)
T ss_dssp CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence 5555555544 35778888876533322111 11224455543 67777777531
Q ss_pred ---CEEEEEecCCceeccc--cccccc--eeeeeecCCCEEEEEEcC-----------CeEEEEEecCCCcee
Q 003459 249 ---SLKVFSWEPIRCHDAV--DVGWSR--LSDLNVHEGKLLGCSYNQ-----------SCVGVWVVDISRIEP 303 (818)
Q Consensus 249 ---~I~Vwd~~~~~~~~~~--~~~~~~--v~~l~~~~g~lLatg~~D-----------g~V~IWdvd~~~~~~ 303 (818)
.+.+||..+....... ...... ...+..++|++++.|+.+ ..+.+||..+.+-..
T Consensus 430 ~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 430 NAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp CEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred cceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence 2444444443332221 222222 222344699999998865 468899987765443
No 284
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=0.0021 Score=73.17 Aligned_cols=241 Identities=10% Similarity=0.080 Sum_probs=142.8
Q ss_pred CEEEEEEeeC-CCcEEEEEeCCCeEEEEECCCCceEEEecCC---CCCeEEEEE-------cCCCCEEEEEECCC-----
Q 003459 18 TVNCLKIGRK-SSRVLVTGGEDHKVNLWAIGKPNAILSLSGH---TSGIDSVSF-------DSSEVLVAAGAASG----- 81 (818)
Q Consensus 18 ~V~~lafsp~-~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h---~~~V~~l~f-------spdg~~Lasgs~DG----- 81 (818)
....|+|.|. .++++++....+.|++.|+.++.....+... ......++| ++++.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4678999983 5666666665677888998776665544322 235899999 99999777766654
Q ss_pred --eEEEEECCC-CeEE-----EEEcCCCCCeEEEEEeCCCCE-EEEEECCCcEEEEECC-------CCeE----------
Q 003459 82 --TIKLWDLEE-AKIV-----RTLTGHRSNCISVDFHPFGEF-FASGSLDTNLKIWDIR-------KKGC---------- 135 (818)
Q Consensus 82 --~I~IWDl~t-~~~v-----~~l~~h~~~V~sv~fspdg~~-Lasgs~Dg~I~IwDl~-------~~~~---------- 135 (818)
.|.+++... +... ..+... .....++++|++.+ +++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 266665433 1211 122111 23457788995554 5455567789999987 4443
Q ss_pred -EEE-Ee-cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEEC--CCCeE--EEEEecC---C------------CCEE-EE
Q 003459 136 -IHT-YK-GHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDL--TAGKL--LHDFKCH---E------------GQIQ-CI 191 (818)
Q Consensus 136 -i~~-l~-~h~~~V~~l~fspdg~~L~sgs-~Dg~I~IwDl--~t~~~--i~~~~~h---~------------~~I~-sv 191 (818)
... +. +.......|+|+|+|++|+.+. ..+.|+.+|. ..+.. ...+-+. . .... .+
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv 378 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV 378 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence 112 22 1234467899999999766554 5578888554 33332 0222211 1 1234 44
Q ss_pred EEe-------CCCCEEEEEeCCCeEEEEECCCCeEEEEeC-------------CC----------CCCeeEEEEeCC-CC
Q 003459 192 DFH-------PHEFLLATGSADRTVKFWDLETFELIGSAG-------------PE----------TSGVRCLTFNPD-GR 240 (818)
Q Consensus 192 ~fs-------pdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~-------------~~----------~~~I~sl~fspd-g~ 240 (818)
+.. +++.++++=..++.|+.++ .++....... +. -.....|+++++ |.
T Consensus 379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~ 457 (496)
T 3kya_A 379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEM 457 (496)
T ss_dssp EEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTE
T ss_pred EEccccccccCCCeEEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCE
Confidence 454 4566777767788999998 4554332221 10 123678999997 55
Q ss_pred EEEEEECC-CEEEEEecCCce
Q 003459 241 TLLCGLHE-SLKVFSWEPIRC 260 (818)
Q Consensus 241 ~Lasgs~d-~I~Vwd~~~~~~ 260 (818)
++++-..+ .|+.++.+...+
T Consensus 458 lyVaD~~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 458 FYVHDQVGHTIRTISMEQEEN 478 (496)
T ss_dssp EEEEETTTTEEEEEEECCCC-
T ss_pred EEEEeCCCCEEEEEECCCCcc
Confidence 44443333 488888776544
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.95 E-value=0.0015 Score=70.84 Aligned_cols=182 Identities=16% Similarity=0.289 Sum_probs=126.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCC----CC---EEEEEEC---CCcEEEEECC--CCeEEE
Q 003459 70 SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPF----GE---FFASGSL---DTNLKIWDIR--KKGCIH 137 (818)
Q Consensus 70 dg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspd----g~---~Lasgs~---Dg~I~IwDl~--~~~~i~ 137 (818)
...+++.....+-+.+||+ +|+.+..+.. +.+..+..-|. |+ ++++... ++.|.+|++. ++ .+.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~-~l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG-TLQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC-CEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC-cee
Confidence 4456777777889999999 8999988864 55666666652 22 2333333 4789999773 33 344
Q ss_pred EEec------CC-CCeEEEEE--cCC-CC-EEEEEECCCeEEEEECC-------CCeEEEEEecCCCCEEEEEEeCCCCE
Q 003459 138 TYKG------HT-RGVNAIRF--TPD-GR-WVVSGGEDNTVKLWDLT-------AGKLLHDFKCHEGQIQCIDFHPHEFL 199 (818)
Q Consensus 138 ~l~~------h~-~~V~~l~f--spd-g~-~L~sgs~Dg~I~IwDl~-------t~~~i~~~~~h~~~I~sv~fspdg~~ 199 (818)
.+.. .. ..+..+|+ +|. +. ++++...+|.+..|++. +.+.+.+|.. .+.+-.|...+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 4421 11 45666777 664 44 68888889999999883 3466777774 467889999998889
Q ss_pred EEEEeCCCeEEEEECC-----CCeEEEEeC--CCCCCeeEEEE--eCCCC-EEEEEEC--CCEEEEEec
Q 003459 200 LATGSADRTVKFWDLE-----TFELIGSAG--PETSGVRCLTF--NPDGR-TLLCGLH--ESLKVFSWE 256 (818)
Q Consensus 200 Lasgs~Dg~I~IwDl~-----t~~~i~~~~--~~~~~I~sl~f--spdg~-~Lasgs~--d~I~Vwd~~ 256 (818)
|+.+-++.-|+.||.+ +++.+..+. .....+..|++ .++|+ ||++++. +.+.||+.+
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999999888888865 456666553 22346888888 45666 7777764 369999986
No 286
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.93 E-value=0.013 Score=69.00 Aligned_cols=203 Identities=7% Similarity=-0.035 Sum_probs=124.2
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce-EEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCe
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA-ILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLWDLEEAK 92 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~-i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IWDl~t~~ 92 (818)
.-..+..++|++.++.++++-...+.|..+++..... ...+...-.....+++++.+..|+.+ ...+.|.+.++....
T Consensus 38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~ 117 (619)
T 3s94_A 38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL 117 (619)
T ss_dssp CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC
Confidence 3446789999987777776666678899998865432 22333333568899999866555554 457899999987544
Q ss_pred EEEEEcCCCCCeEEEEEeCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEE
Q 003459 93 IVRTLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKL 169 (818)
Q Consensus 93 ~v~~l~~h~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~I 169 (818)
....+...-.....|++.|.+.+|+.... .+.|...++............-.....+++++++..|+.+. ..+.|..
T Consensus 118 ~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~ 197 (619)
T 3s94_A 118 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHK 197 (619)
T ss_dssp CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEE
Confidence 33333344455778999998777666654 35777777764333333333345678999999777776665 4567899
Q ss_pred EECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe
Q 003459 170 WDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE 218 (818)
Q Consensus 170 wDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~ 218 (818)
+|+..................+++..+ .++++-...+.|...|..+++
T Consensus 198 ~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 198 SNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp ESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCC
T ss_pred ecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCc
Confidence 998654322222211122245666555 444444456788888877654
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.93 E-value=0.0066 Score=73.41 Aligned_cols=226 Identities=8% Similarity=-0.030 Sum_probs=140.0
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCCC----eEEEEEecCCCCeE
Q 003459 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRKK----GCIHTYKGHTRGVN 147 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~~----~~i~~l~~h~~~V~ 147 (818)
+|+.+ ....|+..++........+. ....+..++|.+.+..|+... ..+.|+.+++... .....+........
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccc-cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 44444 34568888887665544444 455678999998666555554 4578999998753 22333333345567
Q ss_pred EEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe-CC-CeEEEEECCCCeEEEEeC
Q 003459 148 AIRFTPDGRWVVSG-GEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-AD-RTVKFWDLETFELIGSAG 224 (818)
Q Consensus 148 ~l~fspdg~~L~sg-s~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs-~D-g~I~IwDl~t~~~i~~~~ 224 (818)
.|++.+.++.|+.+ ...+.|.+.++........+.........|++.|.+.+|+... .+ +.|...++........+.
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~ 554 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 554 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence 89998877655555 4567899999875544333433445688999999755555554 33 689999987655544444
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeccccc--cccceeeeeecCCCEEEEEEcCCeEEEEEecCCC
Q 003459 225 PETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDV--GWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR 300 (818)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~--~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~ 300 (818)
..-.....|++++.+..|+.+..+ .|..++++......++.. .+.....+...++.++++-...+.|...+..++.
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~ 634 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 634 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCCEEEEEECCCCEEEEEeCCCCc
Confidence 444678999999888888877554 477777665443333322 2333334444555555555566666666644443
No 288
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=0.0023 Score=71.82 Aligned_cols=152 Identities=16% Similarity=0.131 Sum_probs=101.0
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC-C----cEEEEECCCCe
Q 003459 61 GIDSVSFDS-SEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD-T----NLKIWDIRKKG 134 (818)
Q Consensus 61 ~V~~l~fsp-dg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D-g----~I~IwDl~~~~ 134 (818)
....++|+| ++..|+++...+.|+.+|+..+....... .......++|++++++|+++... + .+..++.. +.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cc
Confidence 457899998 45566666665889999998776554444 45568899999999977766652 1 34444432 22
Q ss_pred EE--EEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEec-CCCCEEEEEEeCCCCEEE-EEeCCCeE
Q 003459 135 CI--HTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLA-TGSADRTV 209 (818)
Q Consensus 135 ~i--~~l~~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h~~~I~sv~fspdg~~La-sgs~Dg~I 209 (818)
.. ..+.. ......++++| +|..+++-..++.|..||...+.....+.. .......++|+|+|.+|+ +-...+.|
T Consensus 216 ~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 216 FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 11 22222 23356788999 676666666778999999987765333322 223467899999999554 44567889
Q ss_pred EEEECC
Q 003459 210 KFWDLE 215 (818)
Q Consensus 210 ~IwDl~ 215 (818)
..++..
T Consensus 295 ~~~~~d 300 (430)
T 3tc9_A 295 LRSDYD 300 (430)
T ss_dssp EEEEEE
T ss_pred EEEeCC
Confidence 998765
No 289
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.86 E-value=0.0029 Score=68.58 Aligned_cols=190 Identities=10% Similarity=0.222 Sum_probs=129.5
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCC----CC---EEEEEEC---CCeEEEEECC--CCeEEEEE
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSS----EV---LVAAGAA---SGTIKLWDLE--EAKIVRTL 97 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspd----g~---~Lasgs~---DG~I~IWDl~--t~~~v~~l 97 (818)
.+++.....+-+.+||+ +++.+..+.. +.++.+..-|+ ++ ++++... +++|.+|++. ++. +..+
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence 34555666788999999 8999888864 56777766552 22 3334443 4789999773 443 4444
Q ss_pred cC------CC-CCeEEEEE--eCC-CC-EEEEEECCCcEEEEECC-------CCeEEEEEecCCCCeEEEEEcCCCCEEE
Q 003459 98 TG------HR-SNCISVDF--HPF-GE-FFASGSLDTNLKIWDIR-------KKGCIHTYKGHTRGVNAIRFTPDGRWVV 159 (818)
Q Consensus 98 ~~------h~-~~V~sv~f--spd-g~-~Lasgs~Dg~I~IwDl~-------~~~~i~~l~~h~~~V~~l~fspdg~~L~ 159 (818)
.. .. ..+..+|+ ++. +. ++++...+|.+..|++. +.+.++++.. ...+..|.+.+...+|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 21 11 45666777 664 44 68888889999999883 3356677764 45788999999889999
Q ss_pred EEECCCeEEEEECC-----CCeEEEEEe-cC-CCCEEEEEEe--CCCC-EEEEEe-CCCeEEEEECC-CCeEEEEeC
Q 003459 160 SGGEDNTVKLWDLT-----AGKLLHDFK-CH-EGQIQCIDFH--PHEF-LLATGS-ADRTVKFWDLE-TFELIGSAG 224 (818)
Q Consensus 160 sgs~Dg~I~IwDl~-----t~~~i~~~~-~h-~~~I~sv~fs--pdg~-~Lasgs-~Dg~I~IwDl~-t~~~i~~~~ 224 (818)
.+-++.-|..||.+ +++.+..+. ++ ...+..|++. +++. +|++++ .+.++.+||.+ +.+.+..+.
T Consensus 196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 99999878888865 355665553 22 2468888884 4444 555555 67799999997 666666653
No 290
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.83 E-value=0.0086 Score=72.37 Aligned_cols=208 Identities=10% Similarity=0.014 Sum_probs=131.3
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCC----ceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEE
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP----NAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLW 86 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~----~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IW 86 (818)
+......+..|+|.+.+++++++-...+.|+.+++... .....+...-.....|++.+.+..|+.+ ...+.|.+.
T Consensus 419 l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEE
Confidence 33445677899999877777777777788999988642 2233343344567789998877555544 457899999
Q ss_pred ECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-
Q 003459 87 DLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE- 163 (818)
Q Consensus 87 Dl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~- 163 (818)
++........+.........|++.|.+.+|+.... .+.|...++........+...-.....|++.+.+..|+.+..
T Consensus 499 ~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~ 578 (791)
T 3m0c_C 499 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 578 (791)
T ss_dssp ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence 98765544444444456889999998777766654 267988898754443334333456889999987777776654
Q ss_pred CCeEEEEECCCCeEEEEEec--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 003459 164 DNTVKLWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (818)
Q Consensus 164 Dg~I~IwDl~t~~~i~~~~~--h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i 220 (818)
.+.|..+|+........+.. .-....+|++.. +.++++-...+.|...|..+++.+
T Consensus 579 ~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~ 636 (791)
T 3m0c_C 579 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDV 636 (791)
T ss_dssp TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCC
T ss_pred CCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcce
Confidence 46799999865433333332 122344565532 234444445566777766555443
No 291
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.83 E-value=0.005 Score=67.13 Aligned_cols=230 Identities=15% Similarity=0.149 Sum_probs=129.3
Q ss_pred eeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCce--EEEec---CCCCCeEEEEEcCC---CCEEEEEE
Q 003459 7 YKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNA--ILSLS---GHTSGIDSVSFDSS---EVLVAAGA 78 (818)
Q Consensus 7 ~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~--i~~l~---~h~~~V~~l~fspd---g~~Lasgs 78 (818)
+++..+...-.....++|.| ++++++ +..+|.|.+++ +++. +..+. ........|+|+|+ +..|+++.
T Consensus 21 ~~~~~va~~l~~P~~ia~~p-dG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 21 LRVEEVVGGLEVPWALAFLP-DGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CCEEEEECCCSCEEEEEECT-TSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred cEEEEEECCCCCceEEEEcC-CCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEE
Confidence 45666655556788999999 456544 45679999998 3432 22221 12356889999998 55555544
Q ss_pred C-C-----CeEEEEECCCCe-----E-EEEEc---CCCCCeEEEEEeCCCCEEEEEEC-------------CCcEEEEEC
Q 003459 79 A-S-----GTIKLWDLEEAK-----I-VRTLT---GHRSNCISVDFHPFGEFFASGSL-------------DTNLKIWDI 130 (818)
Q Consensus 79 ~-D-----G~I~IWDl~t~~-----~-v~~l~---~h~~~V~sv~fspdg~~Lasgs~-------------Dg~I~IwDl 130 (818)
. . +.|..|+...+. . +..+. +.......++|.|+|.++++.+. .|.|.-++.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~ 176 (352)
T 2ism_A 97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP 176 (352)
T ss_dssp EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC
Confidence 3 2 678888877542 1 22233 11123468999999976555332 245666665
Q ss_pred CC--------------CeEEEEEecCCCCeEEEEEcC-CCCEEEEEECCCe--------EEEEECCCCe-----------
Q 003459 131 RK--------------KGCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNT--------VKLWDLTAGK----------- 176 (818)
Q Consensus 131 ~~--------------~~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~Dg~--------I~IwDl~t~~----------- 176 (818)
.. ...+.. .++. ....++|+| +|.++++-..... |.+.. .+.
T Consensus 177 dG~~p~~npf~~~~~~~~~i~a-~G~r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~ 252 (352)
T 2ism_A 177 EGEPAPGNPFLGRRGARPEVYS-LGHR-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNYGWPRVVGRG 252 (352)
T ss_dssp TSSBCTTCTTTTCTTSCTTEEE-ECCS-EECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBCCTTTCCSCC
T ss_pred CCCCCCCCcccCCCCCCccEEE-EcCC-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcCCCCcccCCC
Confidence 43 011211 1233 256789999 5664444332222 33322 221
Q ss_pred -------EEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCe----E--EEEeCCCCCCeeEEEEeCCCCEEE
Q 003459 177 -------LLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFE----L--IGSAGPETSGVRCLTFNPDGRTLL 243 (818)
Q Consensus 177 -------~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~----~--i~~~~~~~~~I~sl~fspdg~~La 243 (818)
.+..+. +......++| .+|.++++....+.|...+++... . ...+......+..+++.|||.+++
T Consensus 253 ~~~~~~~p~~~~~-~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv 330 (352)
T 2ism_A 253 NDPRYRDPLYFWP-QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYV 330 (352)
T ss_dssp CCTTSCCCSEECT-TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEE
T ss_pred CCCCCcCCeEecC-CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEE
Confidence 222222 2234567777 467666666667788888776432 1 122212235689999999997776
Q ss_pred EEE
Q 003459 244 CGL 246 (818)
Q Consensus 244 sgs 246 (818)
+..
T Consensus 331 ~~~ 333 (352)
T 2ism_A 331 TTS 333 (352)
T ss_dssp EEC
T ss_pred EEe
Confidence 653
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.83 E-value=0.0045 Score=66.55 Aligned_cols=227 Identities=11% Similarity=0.089 Sum_probs=131.2
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS---GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK 92 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~---~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~ 92 (818)
...+.+|.|.+ +..++ ++.+|.|.. ..+.++.-..+. .+...+..+.+.+++..++++ .+|.|.. ..+.|+
T Consensus 79 ~~~~~~i~~~~--~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~ 152 (327)
T 2xbg_A 79 DYRFNSVSFQG--NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGK 152 (327)
T ss_dssp CCEEEEEEEET--TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTS
T ss_pred CccEEEEEecC--CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCC
Confidence 44688999975 44444 455665543 223344333332 233557888887777666555 4665432 122333
Q ss_pred EEEE-EcCCCCCeEEEEEeCCCCEEEEEECCCcEEE-EEC--CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEE
Q 003459 93 IVRT-LTGHRSNCISVDFHPFGEFFASGSLDTNLKI-WDI--RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVK 168 (818)
Q Consensus 93 ~v~~-l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~I-wDl--~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~ 168 (818)
.... ...+...+..+.+.+++.+++++. +|.++. +|- .+.+.+. ......+..+.+.+++..+ .++.+|.++
T Consensus 153 tW~~~~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~ 228 (327)
T 2xbg_A 153 NWQALVQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIA 228 (327)
T ss_dssp SEEEEECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEE
T ss_pred CCEEeecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEE
Confidence 2222 234556789999999888777664 455544 342 2233332 2345678899999988755 555788888
Q ss_pred EEECCCCeEEEEEec----CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC---CCCCCeeEEEEeCCCCE
Q 003459 169 LWDLTAGKLLHDFKC----HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG---PETSGVRCLTFNPDGRT 241 (818)
Q Consensus 169 IwDl~t~~~i~~~~~----h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~---~~~~~I~sl~fspdg~~ 241 (818)
+++...++....+.. +...+.++.+.+++.+++++. +|.| ++..+.++.-..+. .....+.++.|.+++.+
T Consensus 229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~ 306 (327)
T 2xbg_A 229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQG 306 (327)
T ss_dssp EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTEE
T ss_pred EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCce
Confidence 775333443333321 123588999998887777665 6766 44455443322222 22356789999877776
Q ss_pred EEEEECCCEEEEEec
Q 003459 242 LLCGLHESLKVFSWE 256 (818)
Q Consensus 242 Lasgs~d~I~Vwd~~ 256 (818)
+++|.++. |+.++
T Consensus 307 ~~~G~~G~--i~~~~ 319 (327)
T 2xbg_A 307 FILGQKGI--LLRYV 319 (327)
T ss_dssp EEECSTTE--EEEEC
T ss_pred EEEcCCce--EEEEc
Confidence 66665543 44443
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.79 E-value=0.0034 Score=70.60 Aligned_cols=152 Identities=14% Similarity=0.134 Sum_probs=96.4
Q ss_pred CeEEEEEcCC--CCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCC-----cEEEEECCCC
Q 003459 61 GIDSVSFDSS--EVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDT-----NLKIWDIRKK 133 (818)
Q Consensus 61 ~V~~l~fspd--g~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg-----~I~IwDl~~~ 133 (818)
...+++|+++ +..|+.+...+.|+.+|..++....... .......++|+++|+ |+++...+ .+..++...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 4568999984 4455565555899999998887655443 455688999999999 55554422 2333333221
Q ss_pred eE-EEEEecCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEE-ec-CCCCEEEEEEeCCCCEEEEE-eCCCe
Q 003459 134 GC-IHTYKGHTRGVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDF-KC-HEGQIQCIDFHPHEFLLATG-SADRT 208 (818)
Q Consensus 134 ~~-i~~l~~h~~~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~-~~-h~~~I~sv~fspdg~~Lasg-s~Dg~ 208 (818)
.. ...+. .......++++| +|.++++-..++.|+.+|..++.....+ .. ....-..++|+|++.+|+.+ ...+.
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~ 296 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC 296 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence 11 11122 223456788999 6665556556788999999877663332 21 12233579999999855544 45688
Q ss_pred EEEEECC
Q 003459 209 VKFWDLE 215 (818)
Q Consensus 209 I~IwDl~ 215 (818)
|+.++..
T Consensus 297 I~~~~~d 303 (433)
T 4hw6_A 297 IYRVDYN 303 (433)
T ss_dssp EEEEEBC
T ss_pred EEEEeCC
Confidence 9998865
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.78 E-value=0.061 Score=57.52 Aligned_cols=262 Identities=11% Similarity=0.143 Sum_probs=171.8
Q ss_pred CeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEE
Q 003459 39 HKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFAS 118 (818)
Q Consensus 39 g~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Las 118 (818)
..|.|.|+.++.....-.- ...+.-.+|..+.||.-. ..++.++|+++.+.++.+.- ...|.-=.|-.. +.|+.
T Consensus 49 ~~VvIiDl~n~~~~~Rrpi---~AdsAIMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~l 122 (365)
T 2xzh_A 49 AQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVAL 122 (365)
T ss_dssp EEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-SEEEE
T ss_pred CEEEEEECCCCCCcccccc---ccceeeeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCC-CeEEE
Confidence 4788889877665433221 122345588888888766 78899999999999988874 456767777643 45555
Q ss_pred EECCCcEEEEECCC-CeEEEEEecCC----CCeEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCeEEEEEecCCC
Q 003459 119 GSLDTNLKIWDIRK-KGCIHTYKGHT----RGVNAIRFTPDGRWVVSGGE-------DNTVKLWDLTAGKLLHDFKCHEG 186 (818)
Q Consensus 119 gs~Dg~I~IwDl~~-~~~i~~l~~h~----~~V~~l~fspdg~~L~sgs~-------Dg~I~IwDl~t~~~i~~~~~h~~ 186 (818)
.+ +..|+-|++.. ..+.+.+..|. ..|.....+++.+|++..+- .|.+.+|..+.+ .-+.+.+|.+
T Consensus 123 VT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa 200 (365)
T 2xzh_A 123 VT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA 200 (365)
T ss_dssp EE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEE
T ss_pred Ec-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeee
Confidence 54 56799999974 45666776553 56788888999999886653 367888987754 4455666654
Q ss_pred CEEEEEEeCC---CCEEEEEeC---CCeEEEEECCCC---------eEEEEeCCC---CCCeeEEEEeCCCCEEEEEECC
Q 003459 187 QIQCIDFHPH---EFLLATGSA---DRTVKFWDLETF---------ELIGSAGPE---TSGVRCLTFNPDGRTLLCGLHE 248 (818)
Q Consensus 187 ~I~sv~fspd---g~~Lasgs~---Dg~I~IwDl~t~---------~~i~~~~~~---~~~I~sl~fspdg~~Lasgs~d 248 (818)
....+.+.-+ ..+++.+.. .+.++|.++... +.+..+-+. ..-..++..++.-..++.-+..
T Consensus 201 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~ 280 (365)
T 2xzh_A 201 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKY 280 (365)
T ss_dssp EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETT
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCC
Confidence 4333322211 123333332 258999998432 122222222 4456788888876666655544
Q ss_pred -CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCceeeeecc
Q 003459 249 -SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (818)
Q Consensus 249 -~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~ 308 (818)
-+++||++++.|...-......+...+. .+..=+++-...|.|.--.++..++.||....
T Consensus 281 G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~ivpyi~~~ 342 (365)
T 2xzh_A 281 GYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNV 342 (365)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHHHHHHHT
T ss_pred cEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECcccEehhhhhc
Confidence 5999999999998776666665544443 23334444458999999999999999987644
No 295
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.74 E-value=0.0038 Score=67.19 Aligned_cols=207 Identities=12% Similarity=0.108 Sum_probs=133.4
Q ss_pred EecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC-----C--CCeEEEEE---cCCCCEEEEEEC--
Q 003459 12 FVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH-----T--SGIDSVSF---DSSEVLVAAGAA-- 79 (818)
Q Consensus 12 ~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h-----~--~~V~~l~f---spdg~~Lasgs~-- 79 (818)
+....---.|++|.+.++.++++.-..|+|..|+...+......... . ..+.+|.| .++++++++...
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 33444445578999867776666668999999998755443332211 1 13579999 688877776442
Q ss_pred -----------CCeEEEEECC---CCeEEEEEcC-------------CCCCeEEEEEeCCCCEEEEEECC-CcEEEEECC
Q 003459 80 -----------SGTIKLWDLE---EAKIVRTLTG-------------HRSNCISVDFHPFGEFFASGSLD-TNLKIWDIR 131 (818)
Q Consensus 80 -----------DG~I~IWDl~---t~~~v~~l~~-------------h~~~V~sv~fspdg~~Lasgs~D-g~I~IwDl~ 131 (818)
+..|..||+. +++.+....- -...+..++..++|+..++++.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 6789999999 7877665541 11247899999999999988888 888888876
Q ss_pred CCeEEEEEe-c-----CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEEe-cC---CCCEEEE-EEeCCCC
Q 003459 132 KKGCIHTYK-G-----HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL--LHDFK-CH---EGQIQCI-DFHPHEF 198 (818)
Q Consensus 132 ~~~~i~~l~-~-----h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~--i~~~~-~h---~~~I~sv-~fspdg~ 198 (818)
.. .+..+. . .....+.|+++|+|+.|++....|.|..+|+..... +..-. +. -.....+ ..-.+|+
T Consensus 168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 44 233221 1 122366899999999999988899999999885332 21110 11 1123343 2223566
Q ss_pred E-EEEEeCCCeEEEEECCCCeE
Q 003459 199 L-LATGSADRTVKFWDLETFEL 219 (818)
Q Consensus 199 ~-Lasgs~Dg~I~IwDl~t~~~ 219 (818)
. |++....+.+.+.+.+.++.
T Consensus 247 vllV~~~~~~~~~l~S~DgW~s 268 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWDNWKS 268 (334)
T ss_dssp EEEEEEETTEEEEEECSSTTSE
T ss_pred EEEEEcCCCCEEEEECCCCcce
Confidence 6 45555566666666555443
No 296
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.68 E-value=0.027 Score=61.33 Aligned_cols=236 Identities=14% Similarity=0.124 Sum_probs=136.4
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCc-eEEEec---CCCCCeEEEEEcCC---CCEEEEE
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPN-AILSLS---GHTSGIDSVSFDSS---EVLVAAG 77 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~-~i~~l~---~h~~~V~~l~fspd---g~~Lasg 77 (818)
..+++..+...-.....++|.| ++++ +++..+|.|.+++ .+++ .+..+. ........|+|+|+ +..|+++
T Consensus 17 ~~~~~~~va~~l~~P~~ia~~p-dG~l-~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 17 WKFKISEVASDLEVPWSIAPLG-GGRY-LVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp CCEEEEEEECSCSCEEEEEEEE-TTEE-EEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCeEEEEEeCCCCCCeEEEEcC-CCeE-EEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEE
Confidence 3467777766667789999999 5664 4455669999997 3444 222221 12356889999997 4555554
Q ss_pred EC----C----CeEEEEECCCC-------eEE-EEEcC-CCCCeEEEEEeCCCCEEEEEEC-------------CCcEEE
Q 003459 78 AA----S----GTIKLWDLEEA-------KIV-RTLTG-HRSNCISVDFHPFGEFFASGSL-------------DTNLKI 127 (818)
Q Consensus 78 s~----D----G~I~IWDl~t~-------~~v-~~l~~-h~~~V~sv~fspdg~~Lasgs~-------------Dg~I~I 127 (818)
.. + +.|..|+.... +.+ ..+.. .......+.|.|+|.++++.+. .|.|.-
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~r 173 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILR 173 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred EeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence 33 3 57888887654 111 11221 1123467999999986665432 245666
Q ss_pred EECCCC---------eEEEEEecCCCCeEEEEEcC-CCCEEEEEECCC----eEEEEECCC--------C--------eE
Q 003459 128 WDIRKK---------GCIHTYKGHTRGVNAIRFTP-DGRWVVSGGEDN----TVKLWDLTA--------G--------KL 177 (818)
Q Consensus 128 wDl~~~---------~~i~~l~~h~~~V~~l~fsp-dg~~L~sgs~Dg----~I~IwDl~t--------~--------~~ 177 (818)
++.... ..+.. .++.. ...++|+| +|++++ +.... .|.+...-. + ..
T Consensus 174 i~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~~g~l~v-~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p 250 (354)
T 3a9g_A 174 VDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRASGVMVA-TEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDP 250 (354)
T ss_dssp ECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTTTCCEEE-EECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCC
T ss_pred EcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCCCCCEEE-EecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCC
Confidence 665432 12222 23443 46799999 566444 43321 243332100 0 12
Q ss_pred EEEEecCCCCEEEEEEe-------CCCCEEEEEeCCCeEEEEECCCC-eEE--EEe-CCCCCCeeEEEEeCCCCEEEEEE
Q 003459 178 LHDFKCHEGQIQCIDFH-------PHEFLLATGSADRTVKFWDLETF-ELI--GSA-GPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 178 i~~~~~h~~~I~sv~fs-------pdg~~Lasgs~Dg~I~IwDl~t~-~~i--~~~-~~~~~~I~sl~fspdg~~Lasgs 246 (818)
+..+.........+.|. .+|.++++....+.|...++... +.. ..+ ......+..+++.|||.++++..
T Consensus 251 ~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 251 VIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp SEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 22331123456788884 46777777767788999998753 332 223 22245789999999997666653
No 297
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.67 E-value=0.11 Score=57.70 Aligned_cols=263 Identities=11% Similarity=0.135 Sum_probs=172.9
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEE
Q 003459 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA 117 (818)
Q Consensus 38 Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~La 117 (818)
+..|.|.|+.++..+..-.- .-.+.-.+|..+.||.-. ..++.|||+++...++.+.-.. .|.--.|-. .+.|+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis-~~~l~ 120 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS-LNTVA 120 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEE-TTEEE
T ss_pred CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecC-CCeEE
Confidence 34788888877665433221 123455688888777765 7899999999999998887444 455556664 34555
Q ss_pred EEECCCcEEEEECCC-CeEEEEEecCC----CCeEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCeEEEEEecCC
Q 003459 118 SGSLDTNLKIWDIRK-KGCIHTYKGHT----RGVNAIRFTPDGRWVVSGGE-------DNTVKLWDLTAGKLLHDFKCHE 185 (818)
Q Consensus 118 sgs~Dg~I~IwDl~~-~~~i~~l~~h~----~~V~~l~fspdg~~L~sgs~-------Dg~I~IwDl~t~~~i~~~~~h~ 185 (818)
..+ +..|+-|++.. ..+.+.+..|. ..|.....+++.+|++..|- .|.+.+|....+ .-+.+.+|.
T Consensus 121 lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGha 198 (494)
T 1bpo_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (494)
T ss_dssp EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSE
T ss_pred EEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeee
Confidence 553 57899999974 35667776553 56888888999999886552 367888987644 445566665
Q ss_pred CCEEEEEEeCC---CCEEEEEeCC---CeEEEEECCCC---------eEEEEeCCC---CCCeeEEEEeCCCCEEEEEEC
Q 003459 186 GQIQCIDFHPH---EFLLATGSAD---RTVKFWDLETF---------ELIGSAGPE---TSGVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 186 ~~I~sv~fspd---g~~Lasgs~D---g~I~IwDl~t~---------~~i~~~~~~---~~~I~sl~fspdg~~Lasgs~ 247 (818)
+....+.+.-+ ..+++.+... +.++|.++... +.+..+-+. ..-..++..++.-..++.-+.
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK 278 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec
Confidence 54444333221 1244444432 78999998532 122222222 345678888887667766555
Q ss_pred C-CEEEEEecCCceeccccccccceeeeee-cCCCEEEEEEcCCeEEEEEecCCCceeeeecc
Q 003459 248 E-SLKVFSWEPIRCHDAVDVGWSRLSDLNV-HEGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (818)
Q Consensus 248 d-~I~Vwd~~~~~~~~~~~~~~~~v~~l~~-~~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~ 308 (818)
. -+.+||++++.|...-......+...+. .+..=+++-...|.|.--.++...+.||+...
T Consensus 279 ~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi~~~ 341 (494)
T 1bpo_A 279 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNV 341 (494)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHHHHHT
T ss_pred CceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccchhhhhhc
Confidence 4 5999999999998776666665544443 23344444558899999999999999987554
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.65 E-value=0.05 Score=63.95 Aligned_cols=287 Identities=10% Similarity=0.041 Sum_probs=153.6
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~ 95 (818)
-...+.|++.+++++++++-...+.|..+++........+.+.-....+|++..+ .++++-...+.|...|..+++...
T Consensus 170 ~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 170 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR 248 (619)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence 3457889999877777777677788998888543332222212222346677655 344444456788888887665433
Q ss_pred EEcC-----------CC--------------CCeEEEEE-----------eCCC---------------CEEEEEECCCc
Q 003459 96 TLTG-----------HR--------------SNCISVDF-----------HPFG---------------EFFASGSLDTN 124 (818)
Q Consensus 96 ~l~~-----------h~--------------~~V~sv~f-----------spdg---------------~~Lasgs~Dg~ 124 (818)
.+.. |. +.+..+++ .|.| .+|+.+ ..+.
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~ 327 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLA-RRTD 327 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEEE-ESSC
T ss_pred EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEEE-cccc
Confidence 3211 10 01111222 1111 123333 2345
Q ss_pred EEEEECCCCeEEE-EEe-cCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCC-CCEE
Q 003459 125 LKIWDIRKKGCIH-TYK-GHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPH-EFLL 200 (818)
Q Consensus 125 I~IwDl~~~~~i~-~l~-~h~~~V~~l~fspdg~~L~sgs-~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspd-g~~L 200 (818)
|+..++....... .+. ..-..+..++|.+.+..|+.+. ..+.|+.+++........+...-.....+++.+. ++++
T Consensus 328 i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY 407 (619)
T 3s94_A 328 LRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLY 407 (619)
T ss_dssp EEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEE
T ss_pred eEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEE
Confidence 6666665442111 111 1124577899998656666554 5678999998754433333333345678999874 5566
Q ss_pred EEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC---CEEEEEecCCceeccccccccceeeeee-
Q 003459 201 ATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE---SLKVFSWEPIRCHDAVDVGWSRLSDLNV- 276 (818)
Q Consensus 201 asgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d---~I~Vwd~~~~~~~~~~~~~~~~v~~l~~- 276 (818)
++-+..+.|.+.++........+...-...++|+++|...+|+.+..+ .|...+++.......+.........+..
T Consensus 408 ~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD 487 (619)
T 3s94_A 408 WTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALD 487 (619)
T ss_dssp EEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEE
T ss_pred EEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEc
Confidence 665667899999987654322333334567999999975566655432 2444444432222222222222233433
Q ss_pred cCC-CEEEEEEcCCeEEEEEecCCCceee
Q 003459 277 HEG-KLLGCSYNQSCVGVWVVDISRIEPY 304 (818)
Q Consensus 277 ~~g-~lLatg~~Dg~V~IWdvd~~~~~~~ 304 (818)
+++ ++..+=...+.|..++++......+
T Consensus 488 ~~~~~LY~aD~~~~~I~~~~~dG~~~~~~ 516 (619)
T 3s94_A 488 YDEGKIYWGDAKTDKIEVMNTDGTGRRVL 516 (619)
T ss_dssp TTTTEEEEEETTTTEEEEEESSSCCCEEE
T ss_pred ccCCEEEEEECCCCEEEEEecCCCceEEE
Confidence 233 4444444556777777776655443
No 299
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.61 E-value=0.003 Score=66.52 Aligned_cols=226 Identities=15% Similarity=0.168 Sum_probs=117.5
Q ss_pred CCCEEEEEE-CC-----CeEEEEECCCCeEEEE--EcCCCCCeEEEEEeCCCCEEEEEECC-----CcEEEEECCCCe--
Q 003459 70 SEVLVAAGA-AS-----GTIKLWDLEEAKIVRT--LTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKG-- 134 (818)
Q Consensus 70 dg~~Lasgs-~D-----G~I~IWDl~t~~~v~~--l~~h~~~V~sv~fspdg~~Lasgs~D-----g~I~IwDl~~~~-- 134 (818)
++.+++.|+ .+ ..+.+||+.+.+-... +....... +++. -++..++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASVS-LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEEE-ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 344555555 22 4688999887754322 11111112 2222 246667777654 469999988765
Q ss_pred -EEEE--EecCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEE--EecCCCCEEEEEEeCCCCEEEEEe
Q 003459 135 -CIHT--YKGHTRGVNAIRFTPDGRWVVSGGED-----NTVKLWDLTAGKLLHD--FKCHEGQIQCIDFHPHEFLLATGS 204 (818)
Q Consensus 135 -~i~~--l~~h~~~V~~l~fspdg~~L~sgs~D-----g~I~IwDl~t~~~i~~--~~~h~~~I~sv~fspdg~~Lasgs 204 (818)
.... +.........+.+ +++.++.|+.+ ..+.+||+.+.+-... +........++. -++.+++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV--ASGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE--ETTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE--ECCEEEEECC
Confidence 3322 1111111222222 56777777654 3688999887653322 211111112222 2677778877
Q ss_pred CC-----CeEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEEC------CCEEEEEecCCceeccccccccc-
Q 003459 205 AD-----RTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLH------ESLKVFSWEPIRCHDAVDVGWSR- 270 (818)
Q Consensus 205 ~D-----g~I~IwDl~t~~~i~~--~~~~~~~I~sl~fspdg~~Lasgs~------d~I~Vwd~~~~~~~~~~~~~~~~- 270 (818)
.+ ..+.+||+.+.+-... +.........+.+ ++++++.|+. +.+.+||.++.+-...-......
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 54 4689999887654332 2111111122222 5666666643 34778887765443322221111
Q ss_pred eeeeeecCCCEEEEEEcC-----CeEEEEEecCCCcee
Q 003459 271 LSDLNVHEGKLLGCSYNQ-----SCVGVWVVDISRIEP 303 (818)
Q Consensus 271 v~~l~~~~g~lLatg~~D-----g~V~IWdvd~~~~~~ 303 (818)
...+...++++++.|+.+ ..|.+||++..+-..
T Consensus 246 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 283 (301)
T 2vpj_A 246 YVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV 283 (301)
T ss_dssp SCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred ceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence 112334578888888765 356677776665443
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.60 E-value=0.047 Score=64.29 Aligned_cols=200 Identities=7% Similarity=-0.049 Sum_probs=133.8
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCeEEE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAG-AASGTIKLWDLEEAKIVR 95 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasg-s~DG~I~IWDl~t~~~v~ 95 (818)
..+..++|.+.++.++++-..++.|..+++........+.........+++++.+..|+.+ ...+.|.+.++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 4678999999788878887788999999986544443343333457789998765555444 456889999987544333
Q ss_pred EEcCCCCCeEEEEEeCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEEC
Q 003459 96 TLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-DNTVKLWDL 172 (818)
Q Consensus 96 ~l~~h~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~-Dg~I~IwDl 172 (818)
.+...-.....|++.|...+|+.... .+.|...++......... ..-.....+++++++..|+.+.. .+.|..+|+
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~ 195 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNM 195 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcC
Confidence 33334456789999997666666653 467888887654433223 34456789999998777776654 578999998
Q ss_pred CCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE
Q 003459 173 TAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL 219 (818)
Q Consensus 173 ~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~ 219 (818)
..... ..+.........+++.. +.++++-...+.|...|..+++.
T Consensus 196 dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 196 LGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp TSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 75433 23333334456787765 45555555678899998766653
No 301
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.60 E-value=0.0099 Score=63.93 Aligned_cols=191 Identities=13% Similarity=0.142 Sum_probs=125.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCeEEEEEcCC-----C--CCeEEEEE---eCCCCEEEEEE---
Q 003459 55 LSGHTSGIDSVSFDSSEVLVAAGA-ASGTIKLWDLEEAKIVRTLTGH-----R--SNCISVDF---HPFGEFFASGS--- 120 (818)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasgs-~DG~I~IWDl~t~~~v~~l~~h-----~--~~V~sv~f---spdg~~Lasgs--- 120 (818)
+......-.++.|++....|+.++ ..|+|..||...+......... . ..+..|.| .|++.++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 444455567899988666666666 7899999999866544332211 1 13578999 68877777544
Q ss_pred ----------CCCcEEEEECC---CCeEEEEEe--c-----------CCCCeEEEEEcCCCCEEEEEECC-CeEEEEECC
Q 003459 121 ----------LDTNLKIWDIR---KKGCIHTYK--G-----------HTRGVNAIRFTPDGRWVVSGGED-NTVKLWDLT 173 (818)
Q Consensus 121 ----------~Dg~I~IwDl~---~~~~i~~l~--~-----------h~~~V~~l~fspdg~~L~sgs~D-g~I~IwDl~ 173 (818)
.+..|..||+. +++.+.... . .......++..++|+..++++.. +.|..++..
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd 167 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD 167 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence 25779999998 777665543 1 11247899999999999999988 888888876
Q ss_pred CCeEEEEEec------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE--EEEe--CC--CCCCeeEE-EEeCCCC
Q 003459 174 AGKLLHDFKC------HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL--IGSA--GP--ETSGVRCL-TFNPDGR 240 (818)
Q Consensus 174 t~~~i~~~~~------h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~--i~~~--~~--~~~~I~sl-~fspdg~ 240 (818)
.. .+..+.. .....+.|+++|+|.+|++....|.|.-+|+..... +... .. .-.....| ..-.+|+
T Consensus 168 G~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 168 GK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp SC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred CC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 43 3332211 122367999999999888887799999999885332 2211 11 11223443 3345788
Q ss_pred EEEEEE
Q 003459 241 TLLCGL 246 (818)
Q Consensus 241 ~Lasgs 246 (818)
.|+++.
T Consensus 247 vllV~~ 252 (334)
T 2p9w_A 247 SVLVGA 252 (334)
T ss_dssp EEEEEE
T ss_pred EEEEEc
Confidence 755543
No 302
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.60 E-value=0.22 Score=58.57 Aligned_cols=156 Identities=12% Similarity=0.029 Sum_probs=95.2
Q ss_pred CeEEEEEcCCCCEEE-EEECCCeEEEEECCCCeEEEEEe-cCCCCEEEEEEeC-CCCEEEEEeCCC--eEEEEECCCCeE
Q 003459 145 GVNAIRFTPDGRWVV-SGGEDNTVKLWDLTAGKLLHDFK-CHEGQIQCIDFHP-HEFLLATGSADR--TVKFWDLETFEL 219 (818)
Q Consensus 145 ~V~~l~fspdg~~L~-sgs~Dg~I~IwDl~t~~~i~~~~-~h~~~I~sv~fsp-dg~~Lasgs~Dg--~I~IwDl~t~~~ 219 (818)
.+..+++...++.|+ +-+..+.|.+.++. |+....+. ........|+++| +|.++++-.... .|...++.....
T Consensus 390 ~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~ 468 (628)
T 4a0p_A 390 QPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER 468 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC
T ss_pred CcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc
Confidence 467888888766555 44556789999986 54444433 3446689999999 566555543333 577777764433
Q ss_pred EEEeCCCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEec
Q 003459 220 IGSAGPETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 220 i~~~~~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd 297 (818)
.......-.....|++++++..|+.+..+ .|..++++.................+...++.++.+-.....|...+..
T Consensus 469 ~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~ 548 (628)
T 4a0p_A 469 EVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMT 548 (628)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred EEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECc
Confidence 33333334567999999998888877654 4777777544322222222223344555556666665566666666665
Q ss_pred CCCc
Q 003459 298 ISRI 301 (818)
Q Consensus 298 ~~~~ 301 (818)
+++.
T Consensus 549 ~G~~ 552 (628)
T 4a0p_A 549 GREG 552 (628)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 5443
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.59 E-value=0.00012 Score=87.66 Aligned_cols=217 Identities=10% Similarity=0.001 Sum_probs=127.7
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCC----CceEEEecCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCC
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGK----PNAILSLSGHTSGIDSVSFDSSE-VLVAAGAASGTIKLWDLEEA 91 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~----~~~i~~l~~h~~~V~~l~fspdg-~~Lasgs~DG~I~IWDl~t~ 91 (818)
..+..++|.+.++.++++-...+.|+.+++.. ......+...-.....|++.+.+ +++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 45668899986666666666678899998864 22222222112234668887544 44444445688999998765
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEEC--CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEE
Q 003459 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSL--DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVK 168 (818)
Q Consensus 92 ~~v~~l~~h~~~V~sv~fspdg~~Lasgs~--Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~ 168 (818)
.....+.........+++.|.+.+|+.+.. .+.|..+++........+...-.....|+|+|++..|+.+. ..+.|.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~ 565 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSIS 565 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEE
Confidence 544433333345678899987666555543 26788887754322211222233456899999766565554 557899
Q ss_pred EEECCCCeEEEEEec--CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEE
Q 003459 169 LWDLTAGKLLHDFKC--HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLT 234 (818)
Q Consensus 169 IwDl~t~~~i~~~~~--h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~ 234 (818)
.+|+........+.. .......|++..+ .++++....+.|..+|..+++.+..+.........|+
T Consensus 566 ~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 566 SIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCC
T ss_pred EEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEE
Confidence 999864332222221 1122345556544 4555556678899999888888777654333334443
No 304
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.59 E-value=0.0023 Score=67.33 Aligned_cols=210 Identities=15% Similarity=0.143 Sum_probs=108.8
Q ss_pred CCcEEEEEe-CC-----CeEEEEECCCCceEEEe--cCCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCe--
Q 003459 28 SSRVLVTGG-ED-----HKVNLWAIGKPNAILSL--SGHTSGIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEEAK-- 92 (818)
Q Consensus 28 ~~~lLatgs-~D-----g~V~lWdl~~~~~i~~l--~~h~~~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~t~~-- 92 (818)
++.+++.|+ .+ ..+.+||..+.+....- .........+. -++.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~ 91 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG 91 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence 445666776 33 36888998766543221 11111112222 256677777754 468999988765
Q ss_pred -EEE--EEcCCCCCeEEEEEeCCCCEEEEEECC-----CcEEEEECCCCeEEEEEec--CCCCeEEEEEcCCCCEEEEEE
Q 003459 93 -IVR--TLTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCIHTYKG--HTRGVNAIRFTPDGRWVVSGG 162 (818)
Q Consensus 93 -~v~--~l~~h~~~V~sv~fspdg~~Lasgs~D-----g~I~IwDl~~~~~i~~l~~--h~~~V~~l~fspdg~~L~sgs 162 (818)
-.. .+.........+.+ ++..++.|+.+ ..+.+||+.+.+....-.. ......++.+ +++.++.|+
T Consensus 92 ~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG 167 (301)
T 2vpj_A 92 VWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGG 167 (301)
T ss_dssp CCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECC
T ss_pred eeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECC
Confidence 222 22211222222222 56666666643 3688999887764433221 1111122222 677777777
Q ss_pred CC-----CeEEEEECCCCeEEEEEecCC--CCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeEEEE--eCCCCC
Q 003459 163 ED-----NTVKLWDLTAGKLLHDFKCHE--GQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFELIGS--AGPETS 228 (818)
Q Consensus 163 ~D-----g~I~IwDl~t~~~i~~~~~h~--~~I~sv~fspdg~~Lasgs~D-----g~I~IwDl~t~~~i~~--~~~~~~ 228 (818)
.+ ..+.+||+.+.+-...-.... .....+. -++.+++.|+.+ ..+.+||+.+.+-... +.....
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~ 245 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC 245 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence 55 458899998765332211111 1112222 266777787764 4689999987654332 211111
Q ss_pred CeeEEEEeCCCCEEEEEEC
Q 003459 229 GVRCLTFNPDGRTLLCGLH 247 (818)
Q Consensus 229 ~I~sl~fspdg~~Lasgs~ 247 (818)
....+. -++++++.|+.
T Consensus 246 ~~~~~~--~~~~i~v~GG~ 262 (301)
T 2vpj_A 246 YVGATV--LRGRLYAIAGY 262 (301)
T ss_dssp SCEEEE--ETTEEEEECCB
T ss_pred ceeEEE--ECCEEEEEcCc
Confidence 122222 25666666643
No 305
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.54 E-value=0.11 Score=62.05 Aligned_cols=261 Identities=10% Similarity=0.113 Sum_probs=153.3
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEec----CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLS----GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA 91 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~----~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~ 91 (818)
...|.|+.-..+ + +|..|..+| +..||-. ....+. .....|.++....++ .|..|+.+| +..||..+.
T Consensus 21 ~n~V~~I~qD~~-G-~lWigT~~G-L~ryDG~---~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSE-G-LIWIGSNKG-LFSYDGY---STQQHFTYGENNNTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTT-S-CEEEEESSC-EEEECSS---CEEECSCTTSTTSSCEEEEEEETTT-EEEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCC-C-CEEEEECCC-ccccCCC---ceEEEEccCCCCCceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCC
Confidence 457999988763 3 466777777 6677732 222221 123568888877666 566666665 889998876
Q ss_pred eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe-----cCCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 92 KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK-----GHTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 92 ~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~-----~h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
+...........|.++... + ..|..++.+ -|..||..+++.. .+. .....|.++....+|.+.+ |+.+ -
T Consensus 93 ~f~~~~~~~~~~i~~i~~~-~-g~lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-G 166 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMALQ-G-DTLWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-G 166 (758)
T ss_dssp EECCCSCCCCSCEEEEEEE-T-TEEEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEE-EETT-E
T ss_pred EEECcccCCCceEEEEEec-C-CcEEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-C
Confidence 5432111122346666543 4 467777766 5889998766543 331 1234688888887777544 5544 5
Q ss_pred EEEEECCCCeEEEEEecC------CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCC
Q 003459 167 VKLWDLTAGKLLHDFKCH------EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGR 240 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h------~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~ 240 (818)
|..||..+++... +... ...|.++....++..|..|+. +-|..||..+++...........|.++....+|.
T Consensus 167 l~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 244 (758)
T 3ott_A 167 LCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD 244 (758)
T ss_dssp EEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC
T ss_pred HhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC
Confidence 7888987765432 2211 124888888877766666664 4688899887654322111234578888888887
Q ss_pred EEEEEECCCEEEEEecCCceeccc-------cccccceeeeeecCCCEEEEEEcCCeEEEE
Q 003459 241 TLLCGLHESLKVFSWEPIRCHDAV-------DVGWSRLSDLNVHEGKLLGCSYNQSCVGVW 294 (818)
Q Consensus 241 ~Lasgs~d~I~Vwd~~~~~~~~~~-------~~~~~~v~~l~~~~g~lLatg~~Dg~V~IW 294 (818)
+.+. +.+++.+|+.......... ......+.++.......|-.|...| +.++
T Consensus 245 lWig-T~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~ 303 (758)
T 3ott_A 245 LLAG-TDNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGTDYG-ISLS 303 (758)
T ss_dssp EEEE-ETTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEESSS-EEEE
T ss_pred EEEE-eCCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEeCCc-cccc
Confidence 6654 4678877776654332111 1122234555443333444555556 4443
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.51 E-value=0.005 Score=64.82 Aligned_cols=221 Identities=16% Similarity=0.203 Sum_probs=112.9
Q ss_pred CcEEEEEeCC----CeEEEEECCCCceEEEe--cCCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEE
Q 003459 29 SRVLVTGGED----HKVNLWAIGKPNAILSL--SGHTSGIDSVSFDSSEVLVAAGAAS-----GTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 29 ~~lLatgs~D----g~V~lWdl~~~~~i~~l--~~h~~~V~~l~fspdg~~Lasgs~D-----G~I~IWDl~t~~~v~~l 97 (818)
+.+++.|+.+ ..+.+||+.+.+....- ......-..+.+ ++.+++.|+.+ ..+.+||..+.+-...-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 4566666643 45888998776543321 111111112222 56677777754 35889998877643322
Q ss_pred --cCCCCCeEEEEEeCCCCEEEEEECCC-----cEEEEECCCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEECC-----
Q 003459 98 --TGHRSNCISVDFHPFGEFFASGSLDT-----NLKIWDIRKKGCIHTYKGH-TRGVNAIRFTPDGRWVVSGGED----- 164 (818)
Q Consensus 98 --~~h~~~V~sv~fspdg~~Lasgs~Dg-----~I~IwDl~~~~~i~~l~~h-~~~V~~l~fspdg~~L~sgs~D----- 164 (818)
.........+.+ ++..++.|+.++ .+.+||+.+.+....-... ...-.+++.. +++.++.|+.+
T Consensus 94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTE
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCc
Confidence 111112222222 566777776553 5888998877644331111 1111122222 56666666543
Q ss_pred --CeEEEEECCCCeEEEE--EecCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeEEEE--eCCCCCCeeEE
Q 003459 165 --NTVKLWDLTAGKLLHD--FKCHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFELIGS--AGPETSGVRCL 233 (818)
Q Consensus 165 --g~I~IwDl~t~~~i~~--~~~h~~~I~sv~fspdg~~Lasgs~D-----g~I~IwDl~t~~~i~~--~~~~~~~I~sl 233 (818)
..+.+||+.+.+-... +.........+. -++.+++.|+.+ ..+.+||+.+.+-... +....... ++
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~ 247 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA-GV 247 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC-eE
Confidence 3588999987653322 111111112222 267778887754 3699999987654332 21111111 22
Q ss_pred EEeCCCCEEEEEECC------CEEEEEecCC
Q 003459 234 TFNPDGRTLLCGLHE------SLKVFSWEPI 258 (818)
Q Consensus 234 ~fspdg~~Lasgs~d------~I~Vwd~~~~ 258 (818)
+. -++++++.|+.+ .+.+||.++.
T Consensus 248 ~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 248 CA-VNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EE-ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EE-ECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 22 256666666432 3666666554
No 307
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.46 E-value=0.0068 Score=63.93 Aligned_cols=222 Identities=13% Similarity=0.128 Sum_probs=114.2
Q ss_pred CcEEEEEeCC--CeEEEEECCCCceEEEe--cCCCCCeEEEEEcCCCCEEEEEECC----CeEEEEECCCCeEEEEEc--
Q 003459 29 SRVLVTGGED--HKVNLWAIGKPNAILSL--SGHTSGIDSVSFDSSEVLVAAGAAS----GTIKLWDLEEAKIVRTLT-- 98 (818)
Q Consensus 29 ~~lLatgs~D--g~V~lWdl~~~~~i~~l--~~h~~~V~~l~fspdg~~Lasgs~D----G~I~IWDl~t~~~v~~l~-- 98 (818)
+.+++.|+.+ ..+.+||..+.+....- .........+. -++.+++.|+.+ ..+.+||+.+.+-...-.
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 4566667653 56889998776543221 11111122222 256677777754 678899998876433322
Q ss_pred CCCCCeEEEEEeCCCCEEEEEECC------CcEEEEECCCCeEEEEEecCCC-CeEEEEEcCCCCEEEEEEC--------
Q 003459 99 GHRSNCISVDFHPFGEFFASGSLD------TNLKIWDIRKKGCIHTYKGHTR-GVNAIRFTPDGRWVVSGGE-------- 163 (818)
Q Consensus 99 ~h~~~V~sv~fspdg~~Lasgs~D------g~I~IwDl~~~~~i~~l~~h~~-~V~~l~fspdg~~L~sgs~-------- 163 (818)
........+.+ ++..++.|+.+ ..+.+||..+.+....-..... .-.+++.. +++.++.|+.
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTTTCE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCCccc
Confidence 11112222222 56677777655 4689999988765433111111 11122222 5666666654
Q ss_pred -CCeEEEEECCCCeEEEEEecCCCC-EEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeEEEE--eCCCCCCeeEEE
Q 003459 164 -DNTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPHEFLLATGSAD-----RTVKFWDLETFELIGS--AGPETSGVRCLT 234 (818)
Q Consensus 164 -Dg~I~IwDl~t~~~i~~~~~h~~~-I~sv~fspdg~~Lasgs~D-----g~I~IwDl~t~~~i~~--~~~~~~~I~sl~ 234 (818)
-..+.+||+.+.+-...-...... -.++... ++.+++.|+.+ ..+.+||+.+.+-... +.........+.
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred ccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence 345889999877433221111111 1122222 66777777653 3689999987653322 221112222333
Q ss_pred EeCCCCEEEEEECC------CEEEEEecCC
Q 003459 235 FNPDGRTLLCGLHE------SLKVFSWEPI 258 (818)
Q Consensus 235 fspdg~~Lasgs~d------~I~Vwd~~~~ 258 (818)
+ ++++++.|+.+ .+.+||.+..
T Consensus 246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 246 V--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp E--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred E--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 3 66666666532 3555555443
No 308
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.46 E-value=0.00027 Score=84.55 Aligned_cols=223 Identities=9% Similarity=-0.031 Sum_probs=128.4
Q ss_pred CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE-CCCcEEEEECCC----CeEEEEEecCCCCeEEEEEcC
Q 003459 79 ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGS-LDTNLKIWDIRK----KGCIHTYKGHTRGVNAIRFTP 153 (818)
Q Consensus 79 ~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs-~Dg~I~IwDl~~----~~~i~~l~~h~~~V~~l~fsp 153 (818)
..+.|+..++........+.. ...+..++|.+.+..|+.+. ..+.|+.+++.. ......+.........|++.+
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred CccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 346788888887665544443 34567899998777766664 457899999875 222111211122345678875
Q ss_pred CCCEE-EEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC-C-CeEEEEECCCCeEEEEeCCCCCCe
Q 003459 154 DGRWV-VSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-D-RTVKFWDLETFELIGSAGPETSGV 230 (818)
Q Consensus 154 dg~~L-~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~-D-g~I~IwDl~t~~~i~~~~~~~~~I 230 (818)
.+..| ++-...+.|.++++........+.........+++.|.+.+|+.+.. . +.|..+++............-...
T Consensus 463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 44444 44445678999998755443333322344578899986554444432 2 678888776432222222223456
Q ss_pred eEEEEeCCCCEEEEEECC--CEEEEEecCCceecccc--ccccceeeeeecCCCEEEEEEcCCeEEEEEecCCCce
Q 003459 231 RCLTFNPDGRTLLCGLHE--SLKVFSWEPIRCHDAVD--VGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISRIE 302 (818)
Q Consensus 231 ~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~~~~~~--~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~~~~ 302 (818)
..|+|++++..|+.+... .|.+++++.......+. ..+.....+.+..+.++++.+..+.|..++..+++..
T Consensus 543 nGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 543 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEE
T ss_pred cEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCce
Confidence 889999987777766544 47777776433322222 1222223344444566666666778888876555433
No 309
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.45 E-value=0.01 Score=62.46 Aligned_cols=225 Identities=8% Similarity=0.070 Sum_probs=117.6
Q ss_pred CEEEEEEC--CCeEEEEECCCCeEEEE--EcCCCCCeEEEEEeCCCCEEEEEECC----CcEEEEECCCCeEEEEEecC-
Q 003459 72 VLVAAGAA--SGTIKLWDLEEAKIVRT--LTGHRSNCISVDFHPFGEFFASGSLD----TNLKIWDIRKKGCIHTYKGH- 142 (818)
Q Consensus 72 ~~Lasgs~--DG~I~IWDl~t~~~v~~--l~~h~~~V~sv~fspdg~~Lasgs~D----g~I~IwDl~~~~~i~~l~~h- 142 (818)
.+++.|+. ...+.+||..+++-... +.........+. -++..++.|+.+ ..+.+||+.+.+....-...
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 35555654 35789999988764322 111111222222 256667777654 57889999887654332211
Q ss_pred -CCCeEEEEEcCCCCEEEEEECC------CeEEEEECCCCeEEEEEecCCCC-EEEEEEeCCCCEEEEEeC---------
Q 003459 143 -TRGVNAIRFTPDGRWVVSGGED------NTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPHEFLLATGSA--------- 205 (818)
Q Consensus 143 -~~~V~~l~fspdg~~L~sgs~D------g~I~IwDl~t~~~i~~~~~h~~~-I~sv~fspdg~~Lasgs~--------- 205 (818)
......+.+ +++.++.|+.+ ..+.+||..+.+-...-...... -.+++. -++.+++.|+.
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 167 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRV 167 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEE
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCcccc
Confidence 111222222 56777777765 45899999877533221111111 112222 36677777763
Q ss_pred CCeEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEEC------CCEEEEEecCCceeccccccccc-eeeeee
Q 003459 206 DRTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLH------ESLKVFSWEPIRCHDAVDVGWSR-LSDLNV 276 (818)
Q Consensus 206 Dg~I~IwDl~t~~~i~~--~~~~~~~I~sl~fspdg~~Lasgs~------d~I~Vwd~~~~~~~~~~~~~~~~-v~~l~~ 276 (818)
-..+.+||+.+.+-... +...... .++... ++++++.|+. +.+.+||..+.+-...-...... -..+..
T Consensus 168 ~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 245 (306)
T 3ii7_A 168 LNSCEVYDPATETWTELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA 245 (306)
T ss_dssp CCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred cceEEEeCCCCCeEEECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence 34588999987654332 2111111 122222 5666666542 34777777665433222211111 112334
Q ss_pred cCCCEEEEEEcC-----CeEEEEEecCCCcee
Q 003459 277 HEGKLLGCSYNQ-----SCVGVWVVDISRIEP 303 (818)
Q Consensus 277 ~~g~lLatg~~D-----g~V~IWdvd~~~~~~ 303 (818)
.++++++.|+.+ ..+.+||++..+-..
T Consensus 246 ~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 246 VGSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp ETTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 578888888754 457777777665444
No 310
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.39 E-value=0.0079 Score=63.29 Aligned_cols=225 Identities=17% Similarity=0.245 Sum_probs=115.1
Q ss_pred CCEEEEEECC----CeEEEEECCCCeEEEE--EcCCCCCeEEEEEeCCCCEEEEEECC-----CcEEEEECCCCeEEEEE
Q 003459 71 EVLVAAGAAS----GTIKLWDLEEAKIVRT--LTGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCIHTY 139 (818)
Q Consensus 71 g~~Lasgs~D----G~I~IWDl~t~~~v~~--l~~h~~~V~sv~fspdg~~Lasgs~D-----g~I~IwDl~~~~~i~~l 139 (818)
+.+++.|+.+ ..+.+||+.+.+-... +....... +++.. ++..++.|+.+ ..+.+||..+.+....-
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE-CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 3455555543 4588899887753322 11111111 22222 56667777654 35889999877644322
Q ss_pred ec--CCCCeEEEEEcCCCCEEEEEECCC-----eEEEEECCCCeEEEEEecCCC-CEEEEEEeCCCCEEEEEeCC-----
Q 003459 140 KG--HTRGVNAIRFTPDGRWVVSGGEDN-----TVKLWDLTAGKLLHDFKCHEG-QIQCIDFHPHEFLLATGSAD----- 206 (818)
Q Consensus 140 ~~--h~~~V~~l~fspdg~~L~sgs~Dg-----~I~IwDl~t~~~i~~~~~h~~-~I~sv~fspdg~~Lasgs~D----- 206 (818)
.. .......+.+ ++..++.|+.++ .+.+||+.+.+-...-..... .-.+++. -++.+++.|+.+
T Consensus 94 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTE
T ss_pred CCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCc
Confidence 11 1111222222 567777777653 578899887653322111111 1112222 256677777642
Q ss_pred --CeEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEEC------CCEEEEEecCCceeccccccccc-eeeee
Q 003459 207 --RTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLH------ESLKVFSWEPIRCHDAVDVGWSR-LSDLN 275 (818)
Q Consensus 207 --g~I~IwDl~t~~~i~~--~~~~~~~I~sl~fspdg~~Lasgs~------d~I~Vwd~~~~~~~~~~~~~~~~-v~~l~ 275 (818)
..+.+||+.+.+-... +....... +++.. ++++++.|+. +.+.+||.++.+-...-...... -..+.
T Consensus 171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 248 (302)
T 2xn4_A 171 CLSTVECYNATTNEWTYIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248 (302)
T ss_dssp ECCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred cccEEEEEeCCCCcEEECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence 3588999987654332 22111222 22222 5666666643 24777777665433222221111 11234
Q ss_pred ecCCCEEEEEEcCC-----eEEEEEecCCCce
Q 003459 276 VHEGKLLGCSYNQS-----CVGVWVVDISRIE 302 (818)
Q Consensus 276 ~~~g~lLatg~~Dg-----~V~IWdvd~~~~~ 302 (818)
..++++++.|+.++ .|.+||++..+-.
T Consensus 249 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 280 (302)
T 2xn4_A 249 AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280 (302)
T ss_dssp EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence 46788888887653 4677777666543
No 311
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.37 E-value=0.045 Score=59.47 Aligned_cols=246 Identities=12% Similarity=0.085 Sum_probs=137.6
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCc-EEEEEeCCCeEEEEECCCCceEEEe-------cCCCCCeEEEEEcCC---CCE
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSR-VLVTGGEDHKVNLWAIGKPNAILSL-------SGHTSGIDSVSFDSS---EVL 73 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~-lLatgs~Dg~V~lWdl~~~~~i~~l-------~~h~~~V~~l~fspd---g~~ 73 (818)
..+++..+...-.....|+|.| +++ +++ +...|.|++++.. +.....+ .........|+|+|+ +..
T Consensus 6 ~g~~~~~va~~l~~P~~i~~~p-dG~~l~V-~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~ 82 (353)
T 2g8s_A 6 ATVNVEVLQDKLDHPWALAFLP-DNHGMLI-TLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRR 82 (353)
T ss_dssp CCSEEEEEEEEESSEEEEEECS-TTCCEEE-EETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCE
T ss_pred CCcEEEEEECCCCCcEEEEEcC-CCCEEEE-EeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCE
Confidence 3456666665556788999999 455 554 4567999999853 3221111 112346789999996 444
Q ss_pred EEEEE-C-------CCeEEEEECCCC--e--EEEE-EcC------CCCCeEEEEEeCCCCEEEEEEC-------------
Q 003459 74 VAAGA-A-------SGTIKLWDLEEA--K--IVRT-LTG------HRSNCISVDFHPFGEFFASGSL------------- 121 (818)
Q Consensus 74 Lasgs-~-------DG~I~IWDl~t~--~--~v~~-l~~------h~~~V~sv~fspdg~~Lasgs~------------- 121 (818)
|+... . ...|..|++..+ . .... +.. .......+.|.|+|.++++.+.
T Consensus 83 lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~ 162 (353)
T 2g8s_A 83 IWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKL 162 (353)
T ss_dssp EEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSC
T ss_pred EEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCC
Confidence 54443 2 235777776533 1 1111 211 1112357999999965444332
Q ss_pred CCcEEEEECCCC--------------eEEEEEecCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCC----------
Q 003459 122 DTNLKIWDIRKK--------------GCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDN--TVKLWDLTAG---------- 175 (818)
Q Consensus 122 Dg~I~IwDl~~~--------------~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg--~I~IwDl~t~---------- 175 (818)
.|.|.-+|.... ..+.. .++. ....++|+|+...|+++.... .=.|.-+..+
T Consensus 163 ~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~ 240 (353)
T 2g8s_A 163 QGKLVRLTDQGEIPDDNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATW 240 (353)
T ss_dssp TTEEEEEETTSCCCTTCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCS
T ss_pred CeEEEEECCCCCCCCCCCCcCCCCCCccEEE-EcCc-CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccC
Confidence 246777776532 11222 2333 367899999433455443321 1112111111
Q ss_pred ---------------------eEEEEEecCCCCEEEEEEeC-------CCCEEEEEeCCCeEEEEECCCCeEEEE--e-C
Q 003459 176 ---------------------KLLHDFKCHEGQIQCIDFHP-------HEFLLATGSADRTVKFWDLETFELIGS--A-G 224 (818)
Q Consensus 176 ---------------------~~i~~~~~h~~~I~sv~fsp-------dg~~Lasgs~Dg~I~IwDl~t~~~i~~--~-~ 224 (818)
..+..+. +......+.|.. ++.++++....+.|...++..++.+.. + .
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~ 319 (353)
T 2g8s_A 241 GINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILT 319 (353)
T ss_dssp SBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESG
T ss_pred CCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEccc
Confidence 1112222 234567788864 467777777788888888876654432 2 2
Q ss_pred CCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 225 PETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 225 ~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
.....+..+++.|||.++++.....-+||-+.
T Consensus 320 ~~~~rp~~v~~~pdG~lyv~td~~~g~I~ri~ 351 (353)
T 2g8s_A 320 DRGQRIRDVRTGPDGYLYVLTDESSGELLKVS 351 (353)
T ss_dssp GGCCCEEEEEECTTSCEEEEECSTTEEEEEEE
T ss_pred CCCCceeEEEECCCCcEEEEEeCCCCEEEEEe
Confidence 22357899999999986665443445677654
No 312
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.30 E-value=0.26 Score=52.67 Aligned_cols=209 Identities=11% Similarity=0.139 Sum_probs=135.5
Q ss_pred EEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEcCC
Q 003459 22 LKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-AKIVRTLTGH 100 (818)
Q Consensus 22 lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t-~~~v~~l~~h 100 (818)
.-.+| ...++|.-. ..++.++|+++...+..+.- ...|.-=.|-.+. .|+..+ +..|+-|+++. ..+++.+..|
T Consensus 72 AIMnP-~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~ 146 (365)
T 2xzh_A 72 AIMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 146 (365)
T ss_dssp EEECS-SSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECC
T ss_pred eeeCC-CccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecc
Confidence 33566 556777665 68899999999999988874 4577777776444 344443 56799999974 4566777655
Q ss_pred C----CCeEEEEEeCCCCEEEEEEC-------CCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC---CCEEEEEEC---
Q 003459 101 R----SNCISVDFHPFGEFFASGSL-------DTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD---GRWVVSGGE--- 163 (818)
Q Consensus 101 ~----~~V~sv~fspdg~~Lasgs~-------Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd---g~~L~sgs~--- 163 (818)
. ..|.....+++.+.++..+- .|.+.+|..+.+ .-+.+.+|......+.+..+ ...++.+..
T Consensus 147 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 225 (365)
T 2xzh_A 147 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 225 (365)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred hhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 3 35666667778886554432 378899998754 45667777654433333211 113333322
Q ss_pred CCeEEEEECCCC--------e-EEEEEecC---CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCee
Q 003459 164 DNTVKLWDLTAG--------K-LLHDFKCH---EGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVR 231 (818)
Q Consensus 164 Dg~I~IwDl~t~--------~-~i~~~~~h---~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~ 231 (818)
.+.++|.++... + .+..+-.. ..---++..++.-..++.-+.-|.|++||++++.++..-+-....|-
T Consensus 226 g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~iF 305 (365)
T 2xzh_A 226 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF 305 (365)
T ss_dssp EEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred CcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCceE
Confidence 258899988432 1 12212111 23456788888878899999999999999999999987666555554
Q ss_pred EEEEe
Q 003459 232 CLTFN 236 (818)
Q Consensus 232 sl~fs 236 (818)
.-+-+
T Consensus 306 ~ta~~ 310 (365)
T 2xzh_A 306 VTAPH 310 (365)
T ss_dssp EEEEE
T ss_pred Eeccc
Confidence 44443
No 313
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.25 E-value=0.095 Score=59.60 Aligned_cols=153 Identities=17% Similarity=0.124 Sum_probs=96.8
Q ss_pred eEEEEEcCC-CC-EEEEEECCCeEEEEECCCCeEEEEEcCC---CCCeEEEEE-------eCCCCEEEEEECCC------
Q 003459 62 IDSVSFDSS-EV-LVAAGAASGTIKLWDLEEAKIVRTLTGH---RSNCISVDF-------HPFGEFFASGSLDT------ 123 (818)
Q Consensus 62 V~~l~fspd-g~-~Lasgs~DG~I~IWDl~t~~~v~~l~~h---~~~V~sv~f-------spdg~~Lasgs~Dg------ 123 (818)
...|+|+|. +. ++++....+.|++.|+.++.+...+... ......++| ++++++|+++...+
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~ 220 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES 220 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence 568999983 44 4444444567999999888776655432 235789999 99999777776654
Q ss_pred -cEEEEECCC-CeEE-----EEEecCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECC-------CCeE-----------
Q 003459 124 -NLKIWDIRK-KGCI-----HTYKGHTRGVNAIRFTPD-GRWVVSGGEDNTVKLWDLT-------AGKL----------- 177 (818)
Q Consensus 124 -~I~IwDl~~-~~~i-----~~l~~h~~~V~~l~fspd-g~~L~sgs~Dg~I~IwDl~-------t~~~----------- 177 (818)
.|.+++... +... ..+... .....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 221 ~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~ 299 (496)
T 3kya_A 221 PSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT 299 (496)
T ss_dssp EEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred ceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence 266776433 1221 122211 23457788995 4545555577889999987 5543
Q ss_pred EEE-Eec-CCCCEEEEEEeCCCCEEEEE-eCCCeEEEEECC
Q 003459 178 LHD-FKC-HEGQIQCIDFHPHEFLLATG-SADRTVKFWDLE 215 (818)
Q Consensus 178 i~~-~~~-h~~~I~sv~fspdg~~Lasg-s~Dg~I~IwDl~ 215 (818)
... +.. .......|+|+|+|.+|+.+ +..+.|+.+|..
T Consensus 300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 112 221 23445799999999965544 466789886543
No 314
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.24 E-value=0.37 Score=60.67 Aligned_cols=285 Identities=12% Similarity=0.106 Sum_probs=159.1
Q ss_pred CCCCEEEEEEeeCC-----CcEEEEEeC-CCeEEEEECCCCceEEEecC-CCCCeEEEEEc--CCCCEEEEEECCCeEEE
Q 003459 15 HSSTVNCLKIGRKS-----SRVLVTGGE-DHKVNLWAIGKPNAILSLSG-HTSGIDSVSFD--SSEVLVAAGAASGTIKL 85 (818)
Q Consensus 15 H~~~V~~lafsp~~-----~~lLatgs~-Dg~V~lWdl~~~~~i~~l~~-h~~~V~~l~fs--pdg~~Lasgs~DG~I~I 85 (818)
-...|.|+++.|.. +.+++.|.. |++|+|+++.+.+.+....- ......++.+. ....+|..|-.||.+.-
T Consensus 552 l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~ 631 (1158)
T 3ei3_A 552 MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFY 631 (1158)
T ss_dssp CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEE
T ss_pred CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEE
Confidence 35689999998632 468999996 99999999987666544321 12344444443 23458889999998866
Q ss_pred EECC--CCeEEEE---EcCCCCCeEEEE-----------------------------------------EeCC--CCEEE
Q 003459 86 WDLE--EAKIVRT---LTGHRSNCISVD-----------------------------------------FHPF--GEFFA 117 (818)
Q Consensus 86 WDl~--t~~~v~~---l~~h~~~V~sv~-----------------------------------------fspd--g~~La 117 (818)
+.++ +|..... +-| ..++.-.. |+.. .+-++
T Consensus 632 ~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v 710 (1158)
T 3ei3_A 632 FGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLA 710 (1158)
T ss_dssp EEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred EEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEE
Confidence 5543 4433211 111 01111111 1110 11122
Q ss_pred EEECCCcEEEEECCCCe--EEEEEecCCCCeEEEEEcCCCCEEEEEECC-------------------------------
Q 003459 118 SGSLDTNLKIWDIRKKG--CIHTYKGHTRGVNAIRFTPDGRWVVSGGED------------------------------- 164 (818)
Q Consensus 118 sgs~Dg~I~IwDl~~~~--~i~~l~~h~~~V~~l~fspdg~~L~sgs~D------------------------------- 164 (818)
.. .++.++|..+.... .++++. -...+..++++|+.+.++.+..+
T Consensus 711 ~~-~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1158)
T 3ei3_A 711 LA-NNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL 788 (1158)
T ss_dssp EE-CSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred EE-cCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence 22 23345555543221 222232 23457788888877665544311
Q ss_pred ------------------CeEEEEECCCCeEEEEEecC-CCCEEEEEEe---CC-CCEEEEEe----------CCCeEEE
Q 003459 165 ------------------NTVKLWDLTAGKLLHDFKCH-EGQIQCIDFH---PH-EFLLATGS----------ADRTVKF 211 (818)
Q Consensus 165 ------------------g~I~IwDl~t~~~i~~~~~h-~~~I~sv~fs---pd-g~~Lasgs----------~Dg~I~I 211 (818)
+.|+++|-.+++.+..+... ...+.+++.. .+ ..+|++|+ ..|.|++
T Consensus 789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~v 868 (1158)
T 3ei3_A 789 FSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVV 868 (1158)
T ss_dssp C----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEE
T ss_pred ccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEE
Confidence 24778888878777666532 2334555432 22 46888887 3578999
Q ss_pred EECCCCeE--EEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceecccccccccee--eeeecCCCEEEEEEc
Q 003459 212 WDLETFEL--IGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLS--DLNVHEGKLLGCSYN 287 (818)
Q Consensus 212 wDl~t~~~--i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~--~l~~~~g~lLatg~~ 287 (818)
|++..+++ ++... ..+++++++-- +| +|++|....+++|+|...+.+..-...+..+. .+. ..+.++++|..
T Consensus 869 f~v~~~kL~lv~~~~-v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~-~~~~~I~vgD~ 944 (1158)
T 3ei3_A 869 FQYSDGKLQTVAEKE-VKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLK-TKGDFILVGDL 944 (1158)
T ss_dssp EEEETTEEEEEEEEE-ESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEEEEEEECCCSCEEEEE-EETTEEEEEES
T ss_pred EEEECCEEEEEEEEE-cCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEEEEeeccccEEEEEEe-ccCCEEEEEEh
Confidence 99865443 33222 25778888744 35 77778788999999987654331111121121 222 24677888877
Q ss_pred CCeEEEEEec--CCCceeeee
Q 003459 288 QSCVGVWVVD--ISRIEPYTI 306 (818)
Q Consensus 288 Dg~V~IWdvd--~~~~~~~~~ 306 (818)
-..|.++..+ ..++..+..
T Consensus 945 ~~Sv~~~~y~~~~~~L~~~a~ 965 (1158)
T 3ei3_A 945 MRSVLLLAYKPMEGNFEEIAR 965 (1158)
T ss_dssp SBCEEEEEEETTTTEEEEEEE
T ss_pred hheEEEEEEEcCCCeEEEEEe
Confidence 7777666544 333444333
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.18 E-value=0.35 Score=52.37 Aligned_cols=237 Identities=13% Similarity=0.093 Sum_probs=135.6
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE--EEec----CCCCCeEEEEEcCC---CCEEEE
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI--LSLS----GHTSGIDSVSFDSS---EVLVAA 76 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i--~~l~----~h~~~V~~l~fspd---g~~Las 76 (818)
.+.+..+...-...+.++|.| +++++++--..|.|++++..+++.. ..+. ........|+|+|+ +..|++
T Consensus 21 ~~~~~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 21 VKVLRTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp EEEEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred CceeEEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 456667777777889999999 5666666655899999986555432 2221 23456889999995 344444
Q ss_pred E---ECCCeEEEEECCCC----------eEE-EEEcC-CCCCeEEEEEeCCCCEEEEEEC-------------CCcEEEE
Q 003459 77 G---AASGTIKLWDLEEA----------KIV-RTLTG-HRSNCISVDFHPFGEFFASGSL-------------DTNLKIW 128 (818)
Q Consensus 77 g---s~DG~I~IWDl~t~----------~~v-~~l~~-h~~~V~sv~fspdg~~Lasgs~-------------Dg~I~Iw 128 (818)
. ..++.|.-|.+..+ +.+ ..+.. .......|.|.|+|.++++.+. .|.|.-+
T Consensus 100 ~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 100 YFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp EEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred EEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 3 23556777766541 222 22321 1223457999999987666432 3555555
Q ss_pred ECCCC---------eEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCCCe------------------EEEE
Q 003459 129 DIRKK---------GCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTAGK------------------LLHD 180 (818)
Q Consensus 129 Dl~~~---------~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~IwDl~t~~------------------~i~~ 180 (818)
+.... ..+.. .+|.. ...++|+|+|.++++-. .++.=.|.-+..+. .+..
T Consensus 180 ~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~ 257 (347)
T 3das_A 180 TPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQ 257 (347)
T ss_dssp CTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEE
T ss_pred eCCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEe
Confidence 55422 11222 24543 56799999877554431 22211222222221 1223
Q ss_pred EecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeE----EEEeCCCCCCeeEEEEeCCCCEEEEEE
Q 003459 181 FKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFEL----IGSAGPETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 181 ~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~----i~~~~~~~~~I~sl~fspdg~~Lasgs 246 (818)
+..+......++|. ++.++...-..+.|....+..... ...+......++++...|||.++++..
T Consensus 258 ~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 258 WSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp ECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 33222355677776 456666666666777777765432 222333456789999999997666543
No 316
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.16 E-value=0.0086 Score=63.38 Aligned_cols=185 Identities=14% Similarity=0.132 Sum_probs=98.2
Q ss_pred CCcEEEEEeCC----CeEEEEECCCCceEEEec--CCCCCeEEEEEcCCCCEEEEEEC----C-----CeEEEEECCCCe
Q 003459 28 SSRVLVTGGED----HKVNLWAIGKPNAILSLS--GHTSGIDSVSFDSSEVLVAAGAA----S-----GTIKLWDLEEAK 92 (818)
Q Consensus 28 ~~~lLatgs~D----g~V~lWdl~~~~~i~~l~--~h~~~V~~l~fspdg~~Lasgs~----D-----G~I~IWDl~t~~ 92 (818)
++.+++.|+.+ ..+.+||..+.+....-. ........+.+ ++.+++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 55677777742 368899987665433211 11111112222 5666667665 2 468899988775
Q ss_pred EEEEE--cCCCCCeEEEEEeCCCCEEEEEECC-----CcEEEEECCCCeEEEEEe--cCCCCeEEEEEcCCCCEEEEEEC
Q 003459 93 IVRTL--TGHRSNCISVDFHPFGEFFASGSLD-----TNLKIWDIRKKGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 93 ~v~~l--~~h~~~V~sv~fspdg~~Lasgs~D-----g~I~IwDl~~~~~i~~l~--~h~~~V~~l~fspdg~~L~sgs~ 163 (818)
-...- .........+.+ ++..++.|+.+ ..+.+||+.+.+....-. .......++.+ ++..++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 43321 111112222222 56666666543 368899998776443211 11111122222 5677777765
Q ss_pred C-----CeEEEEECCCCeEEEEE--ecCCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeEE
Q 003459 164 D-----NTVKLWDLTAGKLLHDF--KCHEGQIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFELI 220 (818)
Q Consensus 164 D-----g~I~IwDl~t~~~i~~~--~~h~~~I~sv~fspdg~~Lasgs~D-----g~I~IwDl~t~~~i 220 (818)
+ ..+.+||+.+.+-...- ........++.+ ++.+++.|+.+ ..+.+||+.+.+-.
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT 244 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence 4 45889998876432211 111111222222 67777887754 46999999876543
No 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.14 E-value=0.03 Score=59.33 Aligned_cols=184 Identities=7% Similarity=0.035 Sum_probs=97.0
Q ss_pred EEEEEeCCCeEEEEECCCCceEEE-ecCCCCCeEEEEEcCCCCEEEEEEC----C-------CeEEEEECCCCeEEEEEc
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDSVSFDSSEVLVAAGAA----S-------GTIKLWDLEEAKIVRTLT 98 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~-l~~h~~~V~~l~fspdg~~Lasgs~----D-------G~I~IWDl~t~~~v~~l~ 98 (818)
+++.|+ ..+.+||..+.+.... +..............++.+++.|+. + ..+.+||..+.+-.. +.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MP 83 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEE-CC
Confidence 455555 5799999988775431 1111122333334457778888873 1 127788988776432 22
Q ss_pred CCCCCe--EEEEEeCCCCEEEEEECC--------CcEEEEECCCCeEEEEEecCCC-CeEEEEEcCCCCEEEEEEC-C--
Q 003459 99 GHRSNC--ISVDFHPFGEFFASGSLD--------TNLKIWDIRKKGCIHTYKGHTR-GVNAIRFTPDGRWVVSGGE-D-- 164 (818)
Q Consensus 99 ~h~~~V--~sv~fspdg~~Lasgs~D--------g~I~IwDl~~~~~i~~l~~h~~-~V~~l~fspdg~~L~sgs~-D-- 164 (818)
....+- .+++.. ++..++.|+.+ ..+.+||..+.+....-..... .-.+++. -+++.++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 84 PLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDR 161 (315)
T ss_dssp CBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred CCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCC
Confidence 111111 122222 45666666632 4689999988754322111111 1112222 35667777776 2
Q ss_pred ---CeEEEEECCCCeEEEEEecCCCC-EEEEEEeCCCCEEEEEeCCC-----eEEEEECCCCeEE
Q 003459 165 ---NTVKLWDLTAGKLLHDFKCHEGQ-IQCIDFHPHEFLLATGSADR-----TVKFWDLETFELI 220 (818)
Q Consensus 165 ---g~I~IwDl~t~~~i~~~~~h~~~-I~sv~fspdg~~Lasgs~Dg-----~I~IwDl~t~~~i 220 (818)
..+.+||..+.+-...-...... -.+++. -++.+++.|+.++ .+.+||+.+.+-.
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 46899999876432211111111 112222 2667888887654 5889999876543
No 318
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.10 E-value=0.11 Score=56.29 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE--EEEEc---CCCCCeEEEEEeCC---CCEEEEEEC-C-----CcE
Q 003459 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI--VRTLT---GHRSNCISVDFHPF---GEFFASGSL-D-----TNL 125 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~--v~~l~---~h~~~V~sv~fspd---g~~Lasgs~-D-----g~I 125 (818)
.....++|.|+|+++ ++..+|.|++++ +++. +..+. ........|+|+|+ +..|+++.. . +.|
T Consensus 31 ~~P~~ia~~pdG~l~-V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGML-IAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEE-EEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEE-EEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 356899999999855 446779999998 4442 22221 12356789999998 555555443 2 678
Q ss_pred EEEECCCCe-----EEE-EEe---cCCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCC---------
Q 003459 126 KIWDIRKKG-----CIH-TYK---GHTRGVNAIRFTPDGRWVVSGGE-------------DNTVKLWDLTA--------- 174 (818)
Q Consensus 126 ~IwDl~~~~-----~i~-~l~---~h~~~V~~l~fspdg~~L~sgs~-------------Dg~I~IwDl~t--------- 174 (818)
..|+...+. .+. .+. ........++|.|||.+.++.+. .|.|.-+|...
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876431 122 233 11122468999999976665432 25666666542
Q ss_pred -----CeEEEEEecCCCCEEEEEEeC-CCCEEEEEeC
Q 003459 175 -----GKLLHDFKCHEGQIQCIDFHP-HEFLLATGSA 205 (818)
Q Consensus 175 -----~~~i~~~~~h~~~I~sv~fsp-dg~~Lasgs~ 205 (818)
...+... ++ .....++|+| ++.++++-..
T Consensus 188 ~~~~~~~~i~a~-G~-rnp~g~a~d~~~g~l~v~d~g 222 (352)
T 2ism_A 188 GRRGARPEVYSL-GH-RNPQGLAWHPKTGELFSSEHG 222 (352)
T ss_dssp TCTTSCTTEEEE-CC-SEECCCEECTTTCCEEEEEEC
T ss_pred CCCCCCccEEEE-cC-CCcccEEEECCCCCEEEEEcC
Confidence 0111111 22 2356789999 6666655443
No 319
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.10 E-value=0.83 Score=54.47 Aligned_cols=224 Identities=13% Similarity=0.113 Sum_probs=134.2
Q ss_pred CCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEE
Q 003459 17 STVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRT 96 (818)
Q Consensus 17 ~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~ 96 (818)
..|.++.... ++ .|..|+.+| +..||..+.+...........|.++.. .++ .|..++.+ -|..+|..+++....
T Consensus 63 ~~i~~i~~d~-~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~ 136 (758)
T 3ott_A 63 TRIYCGVIID-NT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSF 136 (758)
T ss_dssp SCEEEEEEET-TT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEE
T ss_pred ceEEEEEEcC-CC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEe
Confidence 4688887765 33 566777665 889998765332211112335777654 344 56666666 588899877664432
Q ss_pred Ec----CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecC------CCCeEEEEEcCCCCEEEEEECCCe
Q 003459 97 LT----GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGH------TRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 97 l~----~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h------~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
.. .....|.++....+|.+.+ |+.+ -|..||..+++.. .+... ...|.++....++..|..|+. +-
T Consensus 137 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~G 212 (758)
T 3ott_A 137 DTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GY 212 (758)
T ss_dssp CHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EE
T ss_pred ccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CC
Confidence 11 1234688888777776544 5554 4888998776543 22211 124888888877776566664 46
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeC-------CCCCCeeEEEEeCCC
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAG-------PETSGVRCLTFNPDG 239 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~-------~~~~~I~sl~fspdg 239 (818)
|..+|..+++...........|.++....+|.+.+ |+. +-+.+++..+.+...... .....|.++....+|
T Consensus 213 l~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g 290 (758)
T 3ott_A 213 LFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH 290 (758)
T ss_dssp EEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC
T ss_pred CeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC
Confidence 88899887654322111234578888777776554 454 458889887654332211 123458899888888
Q ss_pred CEEEEEECCCEEEE
Q 003459 240 RTLLCGLHESLKVF 253 (818)
Q Consensus 240 ~~Lasgs~d~I~Vw 253 (818)
.+.+ |+.+++.++
T Consensus 291 ~lWi-GT~~Gl~~~ 303 (758)
T 3ott_A 291 NIWL-GTDYGISLS 303 (758)
T ss_dssp CEEE-EESSSEEEE
T ss_pred CEEE-EeCCccccc
Confidence 7555 445566544
No 320
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.09 E-value=0.042 Score=59.87 Aligned_cols=199 Identities=12% Similarity=0.190 Sum_probs=118.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEE------------ECCCeEEEEECCC--CeEE-EEEcC-----CCCCeEEEEEeC--C
Q 003459 55 LSGHTSGIDSVSFDSSEVLVAAG------------AASGTIKLWDLEE--AKIV-RTLTG-----HRSNCISVDFHP--F 112 (818)
Q Consensus 55 l~~h~~~V~~l~fspdg~~Lasg------------s~DG~I~IWDl~t--~~~v-~~l~~-----h~~~V~sv~fsp--d 112 (818)
+.+-......+...++|..++++ ..+|.|.++|+.+ ++.. ..+.+ .......+.+.+ +
T Consensus 45 i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 45 VKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred eCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 44433455677788877555444 1689999999873 2321 12222 123567777766 3
Q ss_pred CC-EEEEEEC---CCcEEEEECCCC--e--EEEEEecC-CCCeEEEEEcCCCCEEEEEE-----------------CCCe
Q 003459 113 GE-FFASGSL---DTNLKIWDIRKK--G--CIHTYKGH-TRGVNAIRFTPDGRWVVSGG-----------------EDNT 166 (818)
Q Consensus 113 g~-~Lasgs~---Dg~I~IwDl~~~--~--~i~~l~~h-~~~V~~l~fspdg~~L~sgs-----------------~Dg~ 166 (818)
+. +|+++.. +..|.+|++... . .+..+.+. -...+.+.+.++|.+.++.. ..|.
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~ 204 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF 204 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE
Confidence 54 4555433 456777766542 2 23344432 24578999999998777654 1255
Q ss_pred EEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCC-CeE--EEEeCCCCCCeeEEEEeC-CCCE
Q 003459 167 VKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLET-FEL--IGSAGPETSGVRCLTFNP-DGRT 241 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t-~~~--i~~~~~~~~~I~sl~fsp-dg~~ 241 (818)
|+.||.. +.. .+...-..-+.++|+||++.|+.+. ..+.|+.|++.. ++. ...+ ...+....+++++ +|.+
T Consensus 205 vyr~d~~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 205 VTYYSPN--DVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL 280 (355)
T ss_dssp EEEECTT--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred EEEEECC--eEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence 6666653 222 2222234568999999998776665 568999999863 332 2223 2245578899999 5998
Q ss_pred EEEEECCCEEEEEecC
Q 003459 242 LLCGLHESLKVFSWEP 257 (818)
Q Consensus 242 Lasgs~d~I~Vwd~~~ 257 (818)
.+++..++.+|+-+++
T Consensus 281 wva~~~~g~~v~~~~P 296 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDA 296 (355)
T ss_dssp EEEEESCHHHHHSCCT
T ss_pred EEEecCCceEEEEECC
Confidence 8866655444444443
No 321
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.04 E-value=0.47 Score=52.68 Aligned_cols=206 Identities=10% Similarity=0.135 Sum_probs=133.4
Q ss_pred EEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEcCCC
Q 003459 23 KIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-AKIVRTLTGHR 101 (818)
Q Consensus 23 afsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t-~~~v~~l~~h~ 101 (818)
-.+| ..+++|.-. ..++.|+|+++...+..+.-. ..|.-=.|-.+. .|+..+ +..|+-|+++. ..+++.|..|.
T Consensus 72 IMnP-~~~iiALra-g~~lQiFnle~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 72 IMNP-ASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EECS-SSSCEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeCC-CCcEEEEec-CCeEEEEchHHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecch
Confidence 3456 445666665 689999999999999888754 456666665443 444443 56899999974 45667776553
Q ss_pred ----CCeEEEEEeCCCCEEEEEE-------CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC---CCEEEEEEC---C
Q 003459 102 ----SNCISVDFHPFGEFFASGS-------LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD---GRWVVSGGE---D 164 (818)
Q Consensus 102 ----~~V~sv~fspdg~~Lasgs-------~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd---g~~L~sgs~---D 164 (818)
..|.....+++.+.++..+ ..|.+.+|..+.+ .-+.+.+|......+.+..+ ...++.+.. .
T Consensus 147 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 225 (494)
T 1bpo_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (494)
T ss_dssp GGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTC
T ss_pred hcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 3566667788888765433 2478899998754 45667777665544443321 123343433 3
Q ss_pred CeEEEEECCCC--------eEEEEEe-c---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeE
Q 003459 165 NTVKLWDLTAG--------KLLHDFK-C---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRC 232 (818)
Q Consensus 165 g~I~IwDl~t~--------~~i~~~~-~---h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~s 232 (818)
+.++|.++... +....+. . ...--.++..++.-.+++.-+.-|.|++||++++.++..-+-....|..
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~ 305 (494)
T 1bpo_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 305 (494)
T ss_dssp CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEE
Confidence 78999998532 1122211 1 1234567888888888999999999999999999998876554444443
Q ss_pred EE
Q 003459 233 LT 234 (818)
Q Consensus 233 l~ 234 (818)
-+
T Consensus 306 t~ 307 (494)
T 1bpo_A 306 TA 307 (494)
T ss_dssp EE
T ss_pred ec
Confidence 33
No 322
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=97.02 E-value=0.27 Score=52.15 Aligned_cols=199 Identities=9% Similarity=0.044 Sum_probs=115.3
Q ss_pred eeCCCcEEEEEe-CCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECC--------------CeEEEEECC
Q 003459 25 GRKSSRVLVTGG-EDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAAS--------------GTIKLWDLE 89 (818)
Q Consensus 25 sp~~~~lLatgs-~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~D--------------G~I~IWDl~ 89 (818)
+.+++.+.+... .++.|+..+.+... ...+... .+--|++++.+|+-+... ..|+..++.
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 343555444432 34566666653333 3333321 234457888888777543 467777877
Q ss_pred CCeEEEEEcCCCCCeEEEEEeCCCCEEEEEE----CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEEC-C
Q 003459 90 EAKIVRTLTGHRSNCISVDFHPFGEFFASGS----LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGE-D 164 (818)
Q Consensus 90 t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs----~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~-D 164 (818)
.++...... . . +..|++++++|+... .+..|+..++.... ...+..+.. ..|+++++.|+-.+. .
T Consensus 97 g~~~~~l~~-~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~ 166 (302)
T 3s25_A 97 GHGSTVLDP-D--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKN 166 (302)
T ss_dssp SCCCEEEEC-S--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTT
T ss_pred CCcceEeec-C--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCC
Confidence 665333222 1 1 236778899888776 34466667776433 344443432 456778888887665 5
Q ss_pred CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCC--CeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEE
Q 003459 165 NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSAD--RTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTL 242 (818)
Q Consensus 165 g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~D--g~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~L 242 (818)
..|...++..+.....+. +... ..++|++.+|+-...+ ..|..-++...... .+. ...+ ..|+|+|.+|
T Consensus 167 ~~Iy~~~l~g~~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt--~~~~--~~~~~~g~~I 237 (302)
T 3s25_A 167 GQLYRYDTASQSEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV-VLT--EANI--EHYNVYGSLI 237 (302)
T ss_dssp CCEEEEETTTTEEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE-ECS--CSCE--EEEEEETTEE
T ss_pred ceEEEEECCCCCEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE-EEe--CCCc--ceEEECCCEE
Confidence 789999987665443333 2333 3466888888776644 35666677655432 222 1223 3478889998
Q ss_pred EEEEC
Q 003459 243 LCGLH 247 (818)
Q Consensus 243 asgs~ 247 (818)
+.+.+
T Consensus 238 y~~~~ 242 (302)
T 3s25_A 238 FYQRG 242 (302)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 87644
No 323
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.00 E-value=0.024 Score=59.93 Aligned_cols=226 Identities=15% Similarity=0.136 Sum_probs=116.3
Q ss_pred CCCEEEEEEC----CCeEEEEECCCCeEEEE--EcCCCCCeEEEEEeCCCCEEEEEEC----C-----CcEEEEECCCCe
Q 003459 70 SEVLVAAGAA----SGTIKLWDLEEAKIVRT--LTGHRSNCISVDFHPFGEFFASGSL----D-----TNLKIWDIRKKG 134 (818)
Q Consensus 70 dg~~Lasgs~----DG~I~IWDl~t~~~v~~--l~~h~~~V~sv~fspdg~~Lasgs~----D-----g~I~IwDl~~~~ 134 (818)
++.+++.|+. -..+.+||..+.+-... +....... +++.. ++..++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE-CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4566666663 24688999887764332 11111111 22222 4566666654 2 468899998776
Q ss_pred EEEEEe--cCCCCeEEEEEcCCCCEEEEEECC-----CeEEEEECCCCeEEEEEe--cCCCCEEEEEEeCCCCEEEEEeC
Q 003459 135 CIHTYK--GHTRGVNAIRFTPDGRWVVSGGED-----NTVKLWDLTAGKLLHDFK--CHEGQIQCIDFHPHEFLLATGSA 205 (818)
Q Consensus 135 ~i~~l~--~h~~~V~~l~fspdg~~L~sgs~D-----g~I~IwDl~t~~~i~~~~--~h~~~I~sv~fspdg~~Lasgs~ 205 (818)
....-. ........+.+ +++.++.|+.+ ..+.+||+.+.+-...-. ........+.+ ++.+++.|+.
T Consensus 102 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~ 177 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGF 177 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCB
T ss_pred EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCC
Confidence 433211 11111222222 56677776643 358899988765332211 11111122222 6677777775
Q ss_pred C-----CeEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEEC------CCEEEEEecCCceeccccccccc-e
Q 003459 206 D-----RTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLH------ESLKVFSWEPIRCHDAVDVGWSR-L 271 (818)
Q Consensus 206 D-----g~I~IwDl~t~~~i~~--~~~~~~~I~sl~fspdg~~Lasgs~------d~I~Vwd~~~~~~~~~~~~~~~~-v 271 (818)
+ ..+.+||+.+.+-... +.........+.+ ++++++.|+. +.+.+||..+.+-...-...... .
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 4 4589999987654322 1111112222222 5666666643 34778887665443322222111 1
Q ss_pred eeeeecCCCEEEEEEcC-----CeEEEEEecCCCcee
Q 003459 272 SDLNVHEGKLLGCSYNQ-----SCVGVWVVDISRIEP 303 (818)
Q Consensus 272 ~~l~~~~g~lLatg~~D-----g~V~IWdvd~~~~~~ 303 (818)
..+...++++++.|+.+ ..+.+||+...+-..
T Consensus 256 ~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~ 292 (308)
T 1zgk_A 256 LGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE 292 (308)
T ss_dssp CEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred eEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence 12334577888888754 356677776655443
No 324
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.89 E-value=0.57 Score=50.73 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=106.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-EEEEEc---CCCCCeEEEEEeCC---CCEEEEEEC----C----Cc
Q 003459 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK-IVRTLT---GHRSNCISVDFHPF---GEFFASGSL----D----TN 124 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~-~v~~l~---~h~~~V~sv~fspd---g~~Lasgs~----D----g~ 124 (818)
.....++|.|+|+++ ++..+|.|+++| .+++ .+..+. ........|+|+|+ +..|+++.. + +.
T Consensus 29 ~~P~~ia~~pdG~l~-V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYL-VTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTEEE-EEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCeEE-EEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 457899999999755 556779999997 4554 222221 12346889999997 555555443 2 56
Q ss_pred EEEEECCCC-------eEE-EEEec-CCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCC-------
Q 003459 125 LKIWDIRKK-------GCI-HTYKG-HTRGVNAIRFTPDGRWVVSGGE-------------DNTVKLWDLTAG------- 175 (818)
Q Consensus 125 I~IwDl~~~-------~~i-~~l~~-h~~~V~~l~fspdg~~L~sgs~-------------Dg~I~IwDl~t~------- 175 (818)
|..|+.... +.+ ..+.. .......++|.|||.++++.+. .|.|.-+|....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 888887643 111 11221 1122467999999986666442 245666665421
Q ss_pred --eEEEEEecCCCCEEEEEEeC-CCCEEEEEeCCC---eEEEEECCC--------C--------eEEEEeCCCCCCeeEE
Q 003459 176 --KLLHDFKCHEGQIQCIDFHP-HEFLLATGSADR---TVKFWDLET--------F--------ELIGSAGPETSGVRCL 233 (818)
Q Consensus 176 --~~i~~~~~h~~~I~sv~fsp-dg~~Lasgs~Dg---~I~IwDl~t--------~--------~~i~~~~~~~~~I~sl 233 (818)
..+.. .++. ....++|+| ++.++++-.... .|.+..--. + .++..+.........+
T Consensus 187 ~~~~i~a-~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 187 PNSPIWS-YGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp TTCCEEE-ECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCcEEE-EccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 11222 1232 346899999 566555533222 233332110 0 1222221223457888
Q ss_pred EEe-------CCCCEEEEEECC-CEEEEEecC
Q 003459 234 TFN-------PDGRTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 234 ~fs-------pdg~~Lasgs~d-~I~Vwd~~~ 257 (818)
.|. .+|.++++...+ .|..++++.
T Consensus 265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp EECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred EEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 884 467665554333 366666664
No 325
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.82 E-value=0.079 Score=56.04 Aligned_cols=183 Identities=12% Similarity=0.100 Sum_probs=94.1
Q ss_pred EEEEEeCCCeEEEEECCCCceEEE-ecCCCCCeEEEEEcCCCCEEEEEEC----CC-------eEEEEECCCCeEEEE--
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILS-LSGHTSGIDSVSFDSSEVLVAAGAA----SG-------TIKLWDLEEAKIVRT-- 96 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~-l~~h~~~V~~l~fspdg~~Lasgs~----DG-------~I~IWDl~t~~~v~~-- 96 (818)
+++.|+. .+.+||..+.+.... +..............++.+++.|+. ++ .+.+||..+.+-...
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 4555553 488999887775442 1111122223333457778888873 12 277889887654332
Q ss_pred EcCCCCCeEEEEEeCCCCEEEEEECC-------CcEEEEECCCCeEEEEEecCCCC-eEEEEEcCCCCEEEEEEC-----
Q 003459 97 LTGHRSNCISVDFHPFGEFFASGSLD-------TNLKIWDIRKKGCIHTYKGHTRG-VNAIRFTPDGRWVVSGGE----- 163 (818)
Q Consensus 97 l~~h~~~V~sv~fspdg~~Lasgs~D-------g~I~IwDl~~~~~i~~l~~h~~~-V~~l~fspdg~~L~sgs~----- 163 (818)
+....... +++.. ++..++.|+.+ ..+.+||+.+.+....-...... -.+++. .+++.++.|+.
T Consensus 96 ~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 96 LPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp BSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred CCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence 11111111 22222 56667777653 25888999877644321111110 011222 35666677664
Q ss_pred -CCeEEEEECCCCeEEEEEecCCC-CEEEEEEeCCCCEEEEEeCC-----CeEEEEECCCCeE
Q 003459 164 -DNTVKLWDLTAGKLLHDFKCHEG-QIQCIDFHPHEFLLATGSAD-----RTVKFWDLETFEL 219 (818)
Q Consensus 164 -Dg~I~IwDl~t~~~i~~~~~h~~-~I~sv~fspdg~~Lasgs~D-----g~I~IwDl~t~~~ 219 (818)
-..+.+||+.+.+-...-..... .-.+++. -++.+++.|+.+ ..+.+||+.+.+-
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred ccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 23589999987653322111111 1112222 256777777643 3578899887653
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.82 E-value=0.098 Score=55.24 Aligned_cols=211 Identities=14% Similarity=0.062 Sum_probs=104.1
Q ss_pred EEEEEECCCeEEEEECCCCeEEE-EEcCCCCCeEEEEEeCCCCEEEEEEC----C-------CcEEEEECCCCeEEEEEe
Q 003459 73 LVAAGAASGTIKLWDLEEAKIVR-TLTGHRSNCISVDFHPFGEFFASGSL----D-------TNLKIWDIRKKGCIHTYK 140 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v~-~l~~h~~~V~sv~fspdg~~Lasgs~----D-------g~I~IwDl~~~~~i~~l~ 140 (818)
+++.|+ ..+.+||..+++-.. .+..............++..++.|+. + ..+..||..+.+....-.
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344554 579999999887433 11111122223333446777777773 1 137889998876432211
Q ss_pred cCCCC-eEEEEEcCCCCEEEEEECC--------CeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC-C----
Q 003459 141 GHTRG-VNAIRFTPDGRWVVSGGED--------NTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-D---- 206 (818)
Q Consensus 141 ~h~~~-V~~l~fspdg~~L~sgs~D--------g~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~-D---- 206 (818)
..... -.+++.. ++..++.|+.+ ..+.+||..+++-...-..........+..-++.+++.|+. +
T Consensus 85 ~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 163 (315)
T 4asc_A 85 LPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKC 163 (315)
T ss_dssp BSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCB
T ss_pred CCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcc
Confidence 11100 0112222 56666777632 35899999876522211111111111112245667777775 2
Q ss_pred -CeEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEECC------CEEEEEecCCceeccccccccc-eeeeee
Q 003459 207 -RTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE------SLKVFSWEPIRCHDAVDVGWSR-LSDLNV 276 (818)
Q Consensus 207 -g~I~IwDl~t~~~i~~--~~~~~~~I~sl~fspdg~~Lasgs~d------~I~Vwd~~~~~~~~~~~~~~~~-v~~l~~ 276 (818)
..+.+||..+.+-... +....... +++.. ++++++.|+.+ .+.+||..+.+-...-...... ...+..
T Consensus 164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 241 (315)
T 4asc_A 164 LNKMCVYDPKKFEWKELAPMQTARSLF-GATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS 241 (315)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred cceEEEEeCCCCeEEECCCCCCchhce-EEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE
Confidence 3689999987653322 21111111 22222 56666666533 2566666555333222111111 112334
Q ss_pred cCCCEEEEEEcC
Q 003459 277 HEGKLLGCSYNQ 288 (818)
Q Consensus 277 ~~g~lLatg~~D 288 (818)
.++++++.|+.+
T Consensus 242 ~~~~l~v~GG~~ 253 (315)
T 4asc_A 242 LVGTLYAIGGFA 253 (315)
T ss_dssp ETTEEEEEEEEE
T ss_pred ECCEEEEECCcc
Confidence 677888887764
No 327
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.75 E-value=0.11 Score=54.94 Aligned_cols=209 Identities=13% Similarity=0.076 Sum_probs=102.8
Q ss_pred EEEEEECCCeEEEEECCCCeEEEE-EcCCCCCeEEEEEeCCCCEEEEEEC----CC-------cEEEEECCCCeEEEEE-
Q 003459 73 LVAAGAASGTIKLWDLEEAKIVRT-LTGHRSNCISVDFHPFGEFFASGSL----DT-------NLKIWDIRKKGCIHTY- 139 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v~~-l~~h~~~V~sv~fspdg~~Lasgs~----Dg-------~I~IwDl~~~~~i~~l- 139 (818)
+++.|+. .+..||..+++-... +..............++..++.|+. ++ .+..||..+.+....-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 95 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP 95 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence 3444442 488999988775442 2211122222233446777777773 12 2788898877653321
Q ss_pred -ecCCCCeEEEEEcCCCCEEEEEECC-------CeEEEEECCCCeEEEEEecCCCCE-EEEEEeCCCCEEEEEeC-----
Q 003459 140 -KGHTRGVNAIRFTPDGRWVVSGGED-------NTVKLWDLTAGKLLHDFKCHEGQI-QCIDFHPHEFLLATGSA----- 205 (818)
Q Consensus 140 -~~h~~~V~~l~fspdg~~L~sgs~D-------g~I~IwDl~t~~~i~~~~~h~~~I-~sv~fspdg~~Lasgs~----- 205 (818)
.........+.+ +++.++.|+.+ ..+.+||..+.+-...-....... .+++. .++.+++.|+.
T Consensus 96 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 172 (318)
T 2woz_A 96 LPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKK 172 (318)
T ss_dssp BSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSC
T ss_pred CCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCC
Confidence 111111122222 56777777754 258889988765332211111111 11222 46677777764
Q ss_pred -CCeEEEEECCCCeEEEE--eCCCCCCeeEEEEeCCCCEEEEEECC------CEEEEEecCCceeccccccccc-eeeee
Q 003459 206 -DRTVKFWDLETFELIGS--AGPETSGVRCLTFNPDGRTLLCGLHE------SLKVFSWEPIRCHDAVDVGWSR-LSDLN 275 (818)
Q Consensus 206 -Dg~I~IwDl~t~~~i~~--~~~~~~~I~sl~fspdg~~Lasgs~d------~I~Vwd~~~~~~~~~~~~~~~~-v~~l~ 275 (818)
-..+.+||+.+.+-... +...... .+++.. ++++++.|+.+ .+.+||.++.+-...-...... ...+.
T Consensus 173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~ 250 (318)
T 2woz_A 173 CTNRVFIYNPKKGDWKDLAPMKTPRSM-FGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV 250 (318)
T ss_dssp BCCCEEEEETTTTEEEEECCCSSCCBS-CEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE
T ss_pred ccceEEEEcCCCCEEEECCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE
Confidence 23599999987653322 2111111 122222 56666666432 3556776655433222111111 11334
Q ss_pred ecCCCEEEEEEcC
Q 003459 276 VHEGKLLGCSYNQ 288 (818)
Q Consensus 276 ~~~g~lLatg~~D 288 (818)
..++++++.|+.+
T Consensus 251 ~~~~~i~v~GG~~ 263 (318)
T 2woz_A 251 SLAGSLYAIGGFA 263 (318)
T ss_dssp EETTEEEEECCBC
T ss_pred EECCEEEEECCee
Confidence 4677888877654
No 328
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.69 E-value=0.062 Score=58.57 Aligned_cols=200 Identities=14% Similarity=0.171 Sum_probs=117.7
Q ss_pred EEEEEEeeCCCcEEEEE------------eCCCeEEEEECCCC--ce-EEEecC-----CCCCeEEEEEcC--CCC-EEE
Q 003459 19 VNCLKIGRKSSRVLVTG------------GEDHKVNLWAIGKP--NA-ILSLSG-----HTSGIDSVSFDS--SEV-LVA 75 (818)
Q Consensus 19 V~~lafsp~~~~lLatg------------s~Dg~V~lWdl~~~--~~-i~~l~~-----h~~~V~~l~fsp--dg~-~La 75 (818)
.-.+++.| ++..++++ ..+|.|.++|..+. +. ...+.+ ..-....+.+.+ ++. +|+
T Consensus 52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 44566777 55544443 16899999998632 21 112222 224667777755 454 444
Q ss_pred EE-EC--CCeEEEEECCCC--e--EEEEEcCC-CCCeEEEEEeCCCCEEEEEEC-----------------CCcEEEEEC
Q 003459 76 AG-AA--SGTIKLWDLEEA--K--IVRTLTGH-RSNCISVDFHPFGEFFASGSL-----------------DTNLKIWDI 130 (818)
Q Consensus 76 sg-s~--DG~I~IWDl~t~--~--~v~~l~~h-~~~V~sv~fspdg~~Lasgs~-----------------Dg~I~IwDl 130 (818)
++ .. +..|.+|+++.+ . .+..+.+. -.....+.+.++|.+.++... .|.|+-||.
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~ 210 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP 210 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC
Confidence 44 22 467888776543 2 33344432 235789999999987776541 245666665
Q ss_pred CCCeEEEEEecCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CeE--EEEEecCCCCEEEEEEeC-CCCEEEEEeC
Q 003459 131 RKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGG-EDNTVKLWDLTA-GKL--LHDFKCHEGQIQCIDFHP-HEFLLATGSA 205 (818)
Q Consensus 131 ~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs-~Dg~I~IwDl~t-~~~--i~~~~~h~~~I~sv~fsp-dg~~Lasgs~ 205 (818)
. +.. .+...-...+.++|+||+++|+.+. ..+.|..||+.. +.. ...+. ..+..-.+++.+ +|.+.+++..
T Consensus 211 ~--~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~ 286 (355)
T 3sre_A 211 N--DVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHP 286 (355)
T ss_dssp T--CCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEES
T ss_pred C--eEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecC
Confidence 3 322 2222234578999999999888776 467899999863 332 22332 345678889998 5887776654
Q ss_pred C-CeEEEEECC--CCeEEEEe
Q 003459 206 D-RTVKFWDLE--TFELIGSA 223 (818)
Q Consensus 206 D-g~I~IwDl~--t~~~i~~~ 223 (818)
+ +.|..||.. .+..+..+
T Consensus 287 ~g~~v~~~~P~~~~~s~v~rI 307 (355)
T 3sre_A 287 NGMRIFFYDAENPPGSEVLRI 307 (355)
T ss_dssp CHHHHHSCCTTSCCCEEEEEE
T ss_pred CceEEEEECCCCCCCCEEEEE
Confidence 4 345555544 23444443
No 329
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.45 E-value=3.2 Score=52.16 Aligned_cols=221 Identities=15% Similarity=0.200 Sum_probs=127.0
Q ss_pred EEEEEECCCeEEEEECCCCe--EEEEEcCCCCCeEEEEEeCCCCEEEEEECC----------------------------
Q 003459 73 LVAAGAASGTIKLWDLEEAK--IVRTLTGHRSNCISVDFHPFGEFFASGSLD---------------------------- 122 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~--~v~~l~~h~~~V~sv~fspdg~~Lasgs~D---------------------------- 122 (818)
-++..+ ++.++|..+++.+ .++++. -...+..++++|..+.++.+..+
T Consensus 708 g~v~~~-~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1158)
T 3ei3_A 708 SLALAN-NSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS 785 (1158)
T ss_dssp EEEEEC-SSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred cEEEEc-CCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence 344433 5568888775432 333443 33567788888877755544311
Q ss_pred ---------------------CcEEEEECCCCeEEEEEecC-CCCeEEEEE---cCC-CCEEEEEE----------CCCe
Q 003459 123 ---------------------TNLKIWDIRKKGCIHTYKGH-TRGVNAIRF---TPD-GRWVVSGG----------EDNT 166 (818)
Q Consensus 123 ---------------------g~I~IwDl~~~~~i~~l~~h-~~~V~~l~f---spd-g~~L~sgs----------~Dg~ 166 (818)
+.|+++|..+.+.+..+.-. ...+.+++. ..+ ..+|++|+ ..|.
T Consensus 786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr 865 (1158)
T 3ei3_A 786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR 865 (1158)
T ss_dssp CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence 24677777777776665432 233455543 322 46888886 3488
Q ss_pred EEEEECCCCeEEEEEe-cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE-EeCCCCCCeeEEEEeCCCCEEEE
Q 003459 167 VKLWDLTAGKLLHDFK-CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIG-SAGPETSGVRCLTFNPDGRTLLC 244 (818)
Q Consensus 167 I~IwDl~t~~~i~~~~-~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~-~~~~~~~~I~sl~fspdg~~Las 244 (818)
|++|++..++.....+ ...+++++++-- +|++|+.. ...|++|++...+.+. ..... ..|..+.....|.++++
T Consensus 866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~-~~i~~~~l~~~~~~I~v 941 (1158)
T 3ei3_A 866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECNHY-NNIMALYLKTKGDFILV 941 (1158)
T ss_dssp EEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEEEC-CCSCEEEEEEETTEEEE
T ss_pred EEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEeecc-ccEEEEEEeccCCEEEE
Confidence 9999987554333222 246788888744 45444433 4789999998665333 11111 11333333335678888
Q ss_pred EEC-CCEEEEEecCCc-eecccccccc--ceeeeeecCCCEEEEEEcCCeEEEEEecCC
Q 003459 245 GLH-ESLKVFSWEPIR-CHDAVDVGWS--RLSDLNVHEGKLLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 245 gs~-d~I~Vwd~~~~~-~~~~~~~~~~--~v~~l~~~~g~lLatg~~Dg~V~IWdvd~~ 299 (818)
|.- +++.++.|+... .+..+...+. .+++...-+...++++..+|.+.+...+..
T Consensus 942 gD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 942 GDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp EESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred EEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence 854 478887776432 2222222222 233444444567888999999999887753
No 330
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.39 E-value=0.046 Score=58.81 Aligned_cols=228 Identities=11% Similarity=0.056 Sum_probs=112.8
Q ss_pred CCcEEEEEeCC-CeEEEEECCC-CceEEEecCCC----CCeEEEEEcCCCCEEEEEEC-C---------CeEEEEECCCC
Q 003459 28 SSRVLVTGGED-HKVNLWAIGK-PNAILSLSGHT----SGIDSVSFDSSEVLVAAGAA-S---------GTIKLWDLEEA 91 (818)
Q Consensus 28 ~~~lLatgs~D-g~V~lWdl~~-~~~i~~l~~h~----~~V~~l~fspdg~~Lasgs~-D---------G~I~IWDl~t~ 91 (818)
++.+++.|+.+ ..+.+||+.+ ...-..+..-. ....++.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 56677777643 4688888864 12222222111 11122222 5666667665 2 46889999887
Q ss_pred eEEEEEcCC-CCC-eEEEEEeCCCCEEEEEECC---------------------------------------CcEEEEEC
Q 003459 92 KIVRTLTGH-RSN-CISVDFHPFGEFFASGSLD---------------------------------------TNLKIWDI 130 (818)
Q Consensus 92 ~~v~~l~~h-~~~-V~sv~fspdg~~Lasgs~D---------------------------------------g~I~IwDl 130 (818)
+-...-... ... -.+++. .+++.++.|+.+ ..+.+||+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred cEEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 643321111 111 112222 457777777754 47899999
Q ss_pred CCCeEEEEEecC-CCCe-EEEEEcCCCCEEEEEEC------CCeEEEEEC--CCCeEEEEEec---CCCCEEEEEEeCCC
Q 003459 131 RKKGCIHTYKGH-TRGV-NAIRFTPDGRWVVSGGE------DNTVKLWDL--TAGKLLHDFKC---HEGQIQCIDFHPHE 197 (818)
Q Consensus 131 ~~~~~i~~l~~h-~~~V-~~l~fspdg~~L~sgs~------Dg~I~IwDl--~t~~~i~~~~~---h~~~I~sv~fspdg 197 (818)
.+.+....-... .... .+++.. +++.++.|+. ...+.+||+ .+.+ -..+.. ........+...++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCcccccceEEEECC
Confidence 887654332211 1111 233333 5666666654 245777887 3332 122211 11111111223466
Q ss_pred CEEEEEeCC----------------------CeEEEEECCC--CeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-----
Q 003459 198 FLLATGSAD----------------------RTVKFWDLET--FELIGSAGPETSGVRCLTFNPDGRTLLCGLHE----- 248 (818)
Q Consensus 198 ~~Lasgs~D----------------------g~I~IwDl~t--~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d----- 248 (818)
.+++.|+.+ ..+.+||+.+ ++.+..+......-.+ +.-++++++.|+.+
T Consensus 254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~~ 331 (357)
T 2uvk_A 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGKA 331 (357)
T ss_dssp EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGCE
T ss_pred EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCCE
Confidence 777777632 2578899876 4455444333222222 23367777776532
Q ss_pred --CEEEEEecCCceec
Q 003459 249 --SLKVFSWEPIRCHD 262 (818)
Q Consensus 249 --~I~Vwd~~~~~~~~ 262 (818)
.+.++++++.+...
T Consensus 332 ~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 332 VTDSVLITVKDNKVTV 347 (357)
T ss_dssp EEEEEEEEC-CCSCEE
T ss_pred eeeEEEEEEcCcEeEe
Confidence 24455777665543
No 331
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.36 E-value=0.21 Score=62.98 Aligned_cols=262 Identities=11% Similarity=0.181 Sum_probs=160.2
Q ss_pred CCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEE
Q 003459 38 DHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFA 117 (818)
Q Consensus 38 Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~La 117 (818)
...|.|.|+.++..+..-. -.-.+.-.+|..+.||.-. ..++.|||+++...++.+.- ...|.--.|-.. +.|+
T Consensus 47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~-~~l~ 120 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVA 120 (1630)
T ss_pred CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCC-CeeE
Confidence 3478888887766542211 1122344678887777654 78899999999888777764 345655667643 3444
Q ss_pred EEECCCcEEEEECCC-CeEEEEEecC----CCCeEEEEEcCCCCEEEEEEC-------CCeEEEEECCCCeEEEEEecCC
Q 003459 118 SGSLDTNLKIWDIRK-KGCIHTYKGH----TRGVNAIRFTPDGRWVVSGGE-------DNTVKLWDLTAGKLLHDFKCHE 185 (818)
Q Consensus 118 sgs~Dg~I~IwDl~~-~~~i~~l~~h----~~~V~~l~fspdg~~L~sgs~-------Dg~I~IwDl~t~~~i~~~~~h~ 185 (818)
..+ +..|+.|++.. ..+.+.+..| ...|..-..+++.+|++..|- .|.+.+|....+ .-+.+.+|.
T Consensus 121 lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha 198 (1630)
T 1xi4_A 121 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHA 198 (1630)
T ss_pred EEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhH
Confidence 443 56799999964 2344445444 456888888999999886553 477888887643 333444554
Q ss_pred CCEEEEEEeC--C-CCEEEEEeC---CCeEEEEECCCC---e------EEEEeCCC---CCCeeEEEEeCCCCEEEE-EE
Q 003459 186 GQIQCIDFHP--H-EFLLATGSA---DRTVKFWDLETF---E------LIGSAGPE---TSGVRCLTFNPDGRTLLC-GL 246 (818)
Q Consensus 186 ~~I~sv~fsp--d-g~~Lasgs~---Dg~I~IwDl~t~---~------~i~~~~~~---~~~I~sl~fspdg~~Las-gs 246 (818)
+....+.+.- . ..+++.+.. .+.++|.++... . .+..+-+. .....++..++.-..++. .-
T Consensus 199 ~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk 278 (1630)
T 1xi4_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK 278 (1630)
T ss_pred hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec
Confidence 4433333221 1 123332222 268999988542 1 11111111 233456777776555554 44
Q ss_pred CCCEEEEEecCCceeccccccccceeeeeec--CCCEEEEEEcCCeEEEEEecCCCceeeeecc
Q 003459 247 HESLKVFSWEPIRCHDAVDVGWSRLSDLNVH--EGKLLGCSYNQSCVGVWVVDISRIEPYTIGS 308 (818)
Q Consensus 247 ~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~--~g~lLatg~~Dg~V~IWdvd~~~~~~~~~~~ 308 (818)
.+-+.+||++++.+...-......+...+.. .+.++++ ...|.|.--.++...+.||+...
T Consensus 279 ~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~v-nr~G~vl~v~v~~~~iv~yi~~~ 341 (1630)
T 1xi4_A 279 YGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGV-NRKGQVLSVCVEEENIIPYITNV 341 (1630)
T ss_pred CceEEEEecccchhhhhccccCCceEEeccCCCCCceEEE-cCCceEEEEEEccchhhhhHhhc
Confidence 4569999999999876666555555444432 2444444 48888988999999999988654
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.27 E-value=0.12 Score=55.39 Aligned_cols=231 Identities=9% Similarity=0.074 Sum_probs=110.0
Q ss_pred CCCEEEEEEC-CCeEEEEECCC-CeEEEEEcCCC---CCeEEEEEeCCCCEEEEEEC-C---------CcEEEEECCCCe
Q 003459 70 SEVLVAAGAA-SGTIKLWDLEE-AKIVRTLTGHR---SNCISVDFHPFGEFFASGSL-D---------TNLKIWDIRKKG 134 (818)
Q Consensus 70 dg~~Lasgs~-DG~I~IWDl~t-~~~v~~l~~h~---~~V~sv~fspdg~~Lasgs~-D---------g~I~IwDl~~~~ 134 (818)
++.+++.|+. ...+.+||+.+ ......+.... ..-.+++.. ++..++.|+. + ..+.+||+.+.+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI-DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE-TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE-CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 4555555554 35688889864 12222222111 111222222 4666666665 2 468999998876
Q ss_pred EEEEEecC-C-CCeEEEEEcCCCCEEEEEECC---------------------------------------CeEEEEECC
Q 003459 135 CIHTYKGH-T-RGVNAIRFTPDGRWVVSGGED---------------------------------------NTVKLWDLT 173 (818)
Q Consensus 135 ~i~~l~~h-~-~~V~~l~fspdg~~L~sgs~D---------------------------------------g~I~IwDl~ 173 (818)
....-... . ..-.+++. .+++.++.|+.+ ..+.+||..
T Consensus 98 W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE-ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred EEECCCCCCcccccceEEE-ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 44322111 1 11122222 467777888754 478999998
Q ss_pred CCeEEEEEecC-CCCE-EEEEEeCCCCEEEEEeC------CCeEEEEEC--CCCe--EEEEeCCCCCCeeEEEEeCCCCE
Q 003459 174 AGKLLHDFKCH-EGQI-QCIDFHPHEFLLATGSA------DRTVKFWDL--ETFE--LIGSAGPETSGVRCLTFNPDGRT 241 (818)
Q Consensus 174 t~~~i~~~~~h-~~~I-~sv~fspdg~~Lasgs~------Dg~I~IwDl--~t~~--~i~~~~~~~~~I~sl~fspdg~~ 241 (818)
+.+-...-... .... .+++. -++.+++.|+. ...+.+||+ .+.+ .+..+..........+...++++
T Consensus 177 ~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~i 255 (357)
T 2uvk_A 177 TQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSL 255 (357)
T ss_dssp TTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEE
T ss_pred CCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEE
Confidence 76533221111 1111 22333 25667777653 245778887 4333 22222111111121122335666
Q ss_pred EEEEEC-----------------------CCEEEEEecCCceeccccccccce-eeeeecCCCEEEEEEcCC------eE
Q 003459 242 LLCGLH-----------------------ESLKVFSWEPIRCHDAVDVGWSRL-SDLNVHEGKLLGCSYNQS------CV 291 (818)
Q Consensus 242 Lasgs~-----------------------d~I~Vwd~~~~~~~~~~~~~~~~v-~~l~~~~g~lLatg~~Dg------~V 291 (818)
++.|+. ..+.+||.++.+-...-....... ......++++++.|+.++ .|
T Consensus 256 yv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v 335 (357)
T 2uvk_A 256 IFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDS 335 (357)
T ss_dssp EEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTEEEEEEEECGGGCEEEEE
T ss_pred EEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCEEEEEeeeCCCCCEeeeE
Confidence 666642 135677776554332211111111 123346788888888653 34
Q ss_pred EEEEecCCCcee
Q 003459 292 GVWVVDISRIEP 303 (818)
Q Consensus 292 ~IWdvd~~~~~~ 303 (818)
.+++++.++...
T Consensus 336 ~~l~~~~~~~~~ 347 (357)
T 2uvk_A 336 VLITVKDNKVTV 347 (357)
T ss_dssp EEEEC-CCSCEE
T ss_pred EEEEEcCcEeEe
Confidence 455777776554
No 333
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.13 E-value=0.66 Score=52.95 Aligned_cols=253 Identities=10% Similarity=0.105 Sum_probs=153.1
Q ss_pred EEEEEeCCCeEEEEECCCCceEEEecCCC-------------------------CCe--EEEEEc---CCCCEEEEEEC-
Q 003459 31 VLVTGGEDHKVNLWAIGKPNAILSLSGHT-------------------------SGI--DSVSFD---SSEVLVAAGAA- 79 (818)
Q Consensus 31 lLatgs~Dg~V~lWdl~~~~~i~~l~~h~-------------------------~~V--~~l~fs---pdg~~Lasgs~- 79 (818)
.|.+|+..|.|+|+-+.+.+.++.+...+ +.. ..+.+. -||++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 47888999999999999998888764211 111 123332 26778877663
Q ss_pred CCeEEEEECCCCeEEEEEc-CCCCCeEEEEEe--CCCCEEEEEEC-------CCcEE------------EEECCCCeEEE
Q 003459 80 SGTIKLWDLEEAKIVRTLT-GHRSNCISVDFH--PFGEFFASGSL-------DTNLK------------IWDIRKKGCIH 137 (818)
Q Consensus 80 DG~I~IWDl~t~~~v~~l~-~h~~~V~sv~fs--pdg~~Lasgs~-------Dg~I~------------IwDl~~~~~i~ 137 (818)
+..|...+++..++-+.+. .....+..+.|. |+..|+++++. ||... ..|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 6778888998887766554 245678888886 67788888775 23211 11233333322
Q ss_pred EEecCCCCeEEEEEcCCCCEEEEEECCC---------------eEEEEE-------------------------CCC---
Q 003459 138 TYKGHTRGVNAIRFTPDGRWVVSGGEDN---------------TVKLWD-------------------------LTA--- 174 (818)
Q Consensus 138 ~l~~h~~~V~~l~fspdg~~L~sgs~Dg---------------~I~IwD-------------------------l~t--- 174 (818)
.+.- .+....+...++|+|.++.+... .+.++| .+.
T Consensus 232 Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 2221 12233445567788877766431 344444 332
Q ss_pred -Ce-EEEEEecCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEECCCC------e-------EEEEeCCCCCCeeEEEEeCC
Q 003459 175 -GK-LLHDFKCHEGQIQCIDFHPHEFLLATGS-ADRTVKFWDLETF------E-------LIGSAGPETSGVRCLTFNPD 238 (818)
Q Consensus 175 -~~-~i~~~~~h~~~I~sv~fspdg~~Lasgs-~Dg~I~IwDl~t~------~-------~i~~~~~~~~~I~sl~fspd 238 (818)
+. ....+. -......+.++|||+++++++ .+.++.++|++.. + .+.... ..-+....+|.++
T Consensus 311 ~~~~~~~~iP-~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 311 KDSKFTRYVP-VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGR 388 (638)
T ss_dssp BCCSSEEEEE-ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSS
T ss_pred cCCceEEEEe-CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCC
Confidence 11 111111 122335678899999887766 5789999998842 1 122333 3456788999999
Q ss_pred CCEEEEEECC-CEEEEEecCC----------ceeccccccccceeeee------ecCCCEEEEEE
Q 003459 239 GRTLLCGLHE-SLKVFSWEPI----------RCHDAVDVGWSRLSDLN------VHEGKLLGCSY 286 (818)
Q Consensus 239 g~~Lasgs~d-~I~Vwd~~~~----------~~~~~~~~~~~~v~~l~------~~~g~lLatg~ 286 (818)
|....+-.-+ .+.-|+++.. ...+.+++++.+-.... -++|++|++..
T Consensus 389 G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred CceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9433344344 5888988753 34566777777655544 26789988764
No 334
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.031 Score=60.47 Aligned_cols=189 Identities=11% Similarity=-0.012 Sum_probs=112.1
Q ss_pred cEEEEEeCCCeEEEEECCCCceEEEecCC-CCCeEEEEEc--CCCCEEEEE--ECCCeEEEEECCCCeEEEEEcC----C
Q 003459 30 RVLVTGGEDHKVNLWAIGKPNAILSLSGH-TSGIDSVSFD--SSEVLVAAG--AASGTIKLWDLEEAKIVRTLTG----H 100 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~~i~~l~~h-~~~V~~l~fs--pdg~~Lasg--s~DG~I~IWDl~t~~~v~~l~~----h 100 (818)
.+++.++.||.|.-+|..+|+....+... ..++....-. +.+..++.+ +.||.|..++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 36889999999999999999999998754 1222221110 112234443 5799999999998865554431 1
Q ss_pred CCCeEE---EEE-----eCCCCEEEEEECCCcEEEEECCCCeEEEEEecCC--CC-----eEEEEEc-----CCCCEEEE
Q 003459 101 RSNCIS---VDF-----HPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHT--RG-----VNAIRFT-----PDGRWVVS 160 (818)
Q Consensus 101 ~~~V~s---v~f-----spdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~--~~-----V~~l~fs-----pdg~~L~s 160 (818)
..++.. ... ...+..+++|+.+|.++..|+.+|+.+..+.... .. ..|.... ..+..++.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 0145688999999999999999999999987432 10 1112111 12456777
Q ss_pred EECCCeEEEEECCCCeEEEEEe-----cCCCC--E-EEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEE
Q 003459 161 GGEDNTVKLWDLTAGKLLHDFK-----CHEGQ--I-QCIDFHPHEFLLATGSADRTVKFWDLETFELIG 221 (818)
Q Consensus 161 gs~Dg~I~IwDl~t~~~i~~~~-----~h~~~--I-~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~ 221 (818)
+..+..+.+.+ ++|+ +..++ ..... + .+-.++.++.+ +.++.||.|.-+|..+|+.+.
T Consensus 171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77777777777 4454 32221 10000 0 00000123555 557889999999999998876
No 335
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.00 E-value=0.32 Score=53.91 Aligned_cols=141 Identities=13% Similarity=0.190 Sum_probs=95.4
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeEEEEEcCC----CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe----------
Q 003459 69 SSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH----RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG---------- 134 (818)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h----~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~---------- 134 (818)
.++.-++.+ .++.||.-++..+...+.+... -..|..+..+|+|.+||..+ +..|.|..+..+.
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 455555454 3577777777644444444422 22678899999999999885 5679998887321
Q ss_pred --EEEEEec------CCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCC--eEEEEEe---------cCCCCEEEEE
Q 003459 135 --CIHTYKG------HTRGVNAIRFTP---DGRWVVSGGEDNTVKLWDLTAG--KLLHDFK---------CHEGQIQCID 192 (818)
Q Consensus 135 --~i~~l~~------h~~~V~~l~fsp---dg~~L~sgs~Dg~I~IwDl~t~--~~i~~~~---------~h~~~I~sv~ 192 (818)
..+.+.- ...+|..+.|+| .+..|++-..|+.|++||+... ++. .++ .....|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 1233332 246799999999 4678999999999999999852 122 222 2235688999
Q ss_pred EeCCCCEEEEEe--CCCeEEEE
Q 003459 193 FHPHEFLLATGS--ADRTVKFW 212 (818)
Q Consensus 193 fspdg~~Lasgs--~Dg~I~Iw 212 (818)
|..++-.|+..+ .+|.|+-.
T Consensus 187 Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 187 FSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ECTTSSCEEEEECTTSCEEEEE
T ss_pred EcCCCcEEEEEecCCCCCEEEE
Confidence 999887777755 77777643
No 336
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.95 E-value=0.55 Score=51.99 Aligned_cols=140 Identities=15% Similarity=0.123 Sum_probs=91.8
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCC----CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCe-----------
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGH----TSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAK----------- 92 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h----~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~----------- 92 (818)
++.-++.+- ++.|+.-++......+.+... -..|..+..+|+|.+||..+ +..|.|..+..+.
T Consensus 31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHT
T ss_pred CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccc
Confidence 333344443 367887787644445454432 22588899999999999876 5679998887321
Q ss_pred -EEEEEcC------CCCCeEEEEEeCCC---CEEEEEECCCcEEEEECCCC--eEEEEEe---------cCCCCeEEEEE
Q 003459 93 -IVRTLTG------HRSNCISVDFHPFG---EFFASGSLDTNLKIWDIRKK--GCIHTYK---------GHTRGVNAIRF 151 (818)
Q Consensus 93 -~v~~l~~------h~~~V~sv~fspdg---~~Lasgs~Dg~I~IwDl~~~--~~i~~l~---------~h~~~V~~l~f 151 (818)
..+.+.- ....|..+.|||-+ ..|++-..|+.|++||+... ++. .++ .....|.+++|
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEE
Confidence 1223331 24679999999964 58999999999999999752 122 332 12256788888
Q ss_pred cCCCCEEEEEE--CCCeEEEE
Q 003459 152 TPDGRWVVSGG--EDNTVKLW 170 (818)
Q Consensus 152 spdg~~L~sgs--~Dg~I~Iw 170 (818)
.++|-.|+..+ .+|.|+-.
T Consensus 188 g~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 188 SKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CTTSSCEEEEECTTSCEEEEE
T ss_pred cCCCcEEEEEecCCCCCEEEE
Confidence 88776666644 55665543
No 337
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.33 Score=52.35 Aligned_cols=145 Identities=12% Similarity=0.057 Sum_probs=88.5
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEEcCC-CCCeEEEEEe--CCCCEEEEE--ECCCcEEEEECCCCeEEEEEec----C
Q 003459 72 VLVAAGAASGTIKLWDLEEAKIVRTLTGH-RSNCISVDFH--PFGEFFASG--SLDTNLKIWDIRKKGCIHTYKG----H 142 (818)
Q Consensus 72 ~~Lasgs~DG~I~IWDl~t~~~v~~l~~h-~~~V~sv~fs--pdg~~Lasg--s~Dg~I~IwDl~~~~~i~~l~~----h 142 (818)
.++++++.||.|+-+|..+|+....+... ..++....-. +.+..++.+ +.||.|+.+|..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 46889999999999999999999998754 1222221100 112244444 5899999999988865554432 2
Q ss_pred CCCeEE---EEE-----cCCCCEEEEEECCCeEEEEECCCCeEEEEEecCC--CC-----EEEEEEe-----CCCCEEEE
Q 003459 143 TRGVNA---IRF-----TPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHE--GQ-----IQCIDFH-----PHEFLLAT 202 (818)
Q Consensus 143 ~~~V~~---l~f-----spdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~--~~-----I~sv~fs-----pdg~~Las 202 (818)
..++.. ... ...+..+++|+.+|.+...|+++|+.+.++.... +. ..|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 222221 000 0145678999999999999999999999987421 10 1111111 12356777
Q ss_pred EeCCCeEEEEECCCC
Q 003459 203 GSADRTVKFWDLETF 217 (818)
Q Consensus 203 gs~Dg~I~IwDl~t~ 217 (818)
|..+..+.+.+ +++
T Consensus 171 g~~~y~v~~~~-~sG 184 (339)
T 2be1_A 171 GKTIFELGIHS-YDG 184 (339)
T ss_dssp EEEEEECEECC-TTS
T ss_pred ecceEEEEEEC-CCC
Confidence 77677777666 344
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.67 E-value=0.69 Score=52.77 Aligned_cols=226 Identities=11% Similarity=0.179 Sum_probs=141.1
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEEcCCC-------------------------CC--eEEEEEe---CCCCEEEEEE-C
Q 003459 73 LVAAGAASGTIKLWDLEEAKIVRTLTGHR-------------------------SN--CISVDFH---PFGEFFASGS-L 121 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~v~~l~~h~-------------------------~~--V~sv~fs---pdg~~Lasgs-~ 121 (818)
.|.+|+..|.|+|+-+.+++.+..+.... +. -..+.+. .||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 47789999999999999999888764111 00 1123332 2467777766 4
Q ss_pred CCcEEEEECCCCeEEEEEec-CCCCeEEEEEc--CCCCEEEEEEC-------CCeE------------EEEECCCCeEEE
Q 003459 122 DTNLKIWDIRKKGCIHTYKG-HTRGVNAIRFT--PDGRWVVSGGE-------DNTV------------KLWDLTAGKLLH 179 (818)
Q Consensus 122 Dg~I~IwDl~~~~~i~~l~~-h~~~V~~l~fs--pdg~~L~sgs~-------Dg~I------------~IwDl~t~~~i~ 179 (818)
+..|-..+++..++-..+.- ....+..++|. |+-.+++++++ ||.. ...|..+.+..+
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 66788889998887766653 44668888886 67788888775 2321 112333333333
Q ss_pred EEecCCCCEEEEEEeCCCCEEEEEeCCC---------------eEEEEECCC----------------CeEEEEeC----
Q 003459 180 DFKCHEGQIQCIDFHPHEFLLATGSADR---------------TVKFWDLET----------------FELIGSAG---- 224 (818)
Q Consensus 180 ~~~~h~~~I~sv~fspdg~~Lasgs~Dg---------------~I~IwDl~t----------------~~~i~~~~---- 224 (818)
++.. .+....+...++|.+.++.+.+. .+.++++.. +-.+....
T Consensus 232 Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 3321 22333445566777777766432 355665421 11111111
Q ss_pred ---------CCCCCeeEEEEeCCCCEEEEEECC--CEEEEEecCCce-------------eccccccccceeeeeecCCC
Q 003459 225 ---------PETSGVRCLTFNPDGRTLLCGLHE--SLKVFSWEPIRC-------------HDAVDVGWSRLSDLNVHEGK 280 (818)
Q Consensus 225 ---------~~~~~I~sl~fspdg~~Lasgs~d--~I~Vwd~~~~~~-------------~~~~~~~~~~v~~l~~~~g~ 280 (818)
+.......+.++|||+++++++.- .+.|++++.... .....++..++...+..+|.
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~ 390 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN 390 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc
Confidence 111223567899999999988644 699999984211 23346777788777778886
Q ss_pred EEEEEEcCCeEEEEEecCC
Q 003459 281 LLGCSYNQSCVGVWVVDIS 299 (818)
Q Consensus 281 lLatg~~Dg~V~IWdvd~~ 299 (818)
...+-+-|..|--|+++..
T Consensus 391 aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 391 AYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp EEEEETTTTEEEEEEHHHH
T ss_pred eEeeeeecceEEEEeccHH
Confidence 6677789999999999754
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.62 E-value=0.32 Score=57.78 Aligned_cols=192 Identities=14% Similarity=0.151 Sum_probs=107.0
Q ss_pred CCcEEEEEeCC----CeEEEEECCCCceEEEe-c------CCCCCeEEEEEcC-CCCEEEEEECC------CeEEEEECC
Q 003459 28 SSRVLVTGGED----HKVNLWAIGKPNAILSL-S------GHTSGIDSVSFDS-SEVLVAAGAAS------GTIKLWDLE 89 (818)
Q Consensus 28 ~~~lLatgs~D----g~V~lWdl~~~~~i~~l-~------~h~~~V~~l~fsp-dg~~Lasgs~D------G~I~IWDl~ 89 (818)
++.+++.||.+ ..+.+||..+.+....- . .....-.+++... ++.+++.|+.+ ..+.+||..
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~ 476 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK 476 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence 56678888753 46888998777654433 1 1111112233333 67777777754 358899988
Q ss_pred CCeEEEE--EcCCCCCeEEEEEeCCCCEEEEEECCC--cEEEEECCCCeEEEEEe-----cCCCCeEEEEEcCC-CCEEE
Q 003459 90 EAKIVRT--LTGHRSNCISVDFHPFGEFFASGSLDT--NLKIWDIRKKGCIHTYK-----GHTRGVNAIRFTPD-GRWVV 159 (818)
Q Consensus 90 t~~~v~~--l~~h~~~V~sv~fspdg~~Lasgs~Dg--~I~IwDl~~~~~i~~l~-----~h~~~V~~l~fspd-g~~L~ 159 (818)
+.+-... +...... .+++...++..++.|+.++ .+.+||..+......-. .......++.+..+ ++.++
T Consensus 477 t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 477 TREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 8653322 1111111 2233324778888887654 79999998876543221 11122233555554 66777
Q ss_pred EEEC--C-----CeEEEEECCCCeE-----EEEEec---CCCCEEEEEEeCCCCEEEEEeC--------CCeEEEEECCC
Q 003459 160 SGGE--D-----NTVKLWDLTAGKL-----LHDFKC---HEGQIQCIDFHPHEFLLATGSA--------DRTVKFWDLET 216 (818)
Q Consensus 160 sgs~--D-----g~I~IwDl~t~~~-----i~~~~~---h~~~I~sv~fspdg~~Lasgs~--------Dg~I~IwDl~t 216 (818)
.|+. + ..+.+||+.+..- ...+.. ....-.++....++.+++.|+. ...|.+||+.+
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t 635 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS 635 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence 7765 2 4588999987761 222211 1111122333344677787774 34689999988
Q ss_pred CeEE
Q 003459 217 FELI 220 (818)
Q Consensus 217 ~~~i 220 (818)
.+-.
T Consensus 636 ~~W~ 639 (695)
T 2zwa_A 636 ETLT 639 (695)
T ss_dssp TEEE
T ss_pred CeEE
Confidence 7654
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.44 E-value=3.2 Score=43.76 Aligned_cols=216 Identities=8% Similarity=-0.004 Sum_probs=118.8
Q ss_pred CCCCEEEEEE--CCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECC--------------CcEEEEECCC
Q 003459 69 SSEVLVAAGA--ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLD--------------TNLKIWDIRK 132 (818)
Q Consensus 69 pdg~~Lasgs--~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~D--------------g~I~IwDl~~ 132 (818)
.++..|+... .++.|...+.+.... ..+... .+--++++|++|+.+... ..|+..++..
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg 97 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG 97 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCSC-EEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCCC-EEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence 3555555543 245666666543332 222211 123457788887776542 4677788776
Q ss_pred CeEEEEEecCCCCeEEEEEcCCCCEEEEEE----CCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeC-CC
Q 003459 133 KGCIHTYKGHTRGVNAIRFTPDGRWVVSGG----EDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSA-DR 207 (818)
Q Consensus 133 ~~~i~~l~~h~~~V~~l~fspdg~~L~sgs----~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~-Dg 207 (818)
.+... +.. .. +..|++++++|+-.. ....|+..++.... ...+..+.. ..|++++..|+-.+. ..
T Consensus 98 ~~~~~-l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~g~~ 167 (302)
T 3s25_A 98 HGSTV-LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNPKNG 167 (302)
T ss_dssp CCCEE-EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECTTTC
T ss_pred CcceE-eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeCCCc
Confidence 65332 221 11 236777899988776 34457777776433 334443322 456778877776654 67
Q ss_pred eEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEe--cCCceeccccccccceeeeeecCCCEEEE
Q 003459 208 TVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSW--EPIRCHDAVDVGWSRLSDLNVHEGKLLGC 284 (818)
Q Consensus 208 ~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~--~~~~~~~~~~~~~~~v~~l~~~~g~lLat 284 (818)
.|...++..+.....+.. .. ...++|++.+|+....+ ..+|+-. +......... ..+.. ..++++.|.-
T Consensus 168 ~Iy~~~l~g~~~~~l~~~---~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~---~~~~~-~~~~g~~Iy~ 239 (302)
T 3s25_A 168 QLYRYDTASQSEALFYDC---NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTE---ANIEH-YNVYGSLIFY 239 (302)
T ss_dssp CEEEEETTTTEEEEEECS---CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSC---SCEEE-EEEETTEEEE
T ss_pred eEEEEECCCCCEEEEeCC---Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeC---CCcce-EEECCCEEEE
Confidence 888889887665433332 22 23467999998866433 3344444 4333222211 11222 2345666554
Q ss_pred EE--cCCeEEEEEecCCCceeeeec
Q 003459 285 SY--NQSCVGVWVVDISRIEPYTIG 307 (818)
Q Consensus 285 g~--~Dg~V~IWdvd~~~~~~~~~~ 307 (818)
+. ..+.|..-++|......+..+
T Consensus 240 ~~~~~~~~i~~~~~DG~~r~~l~~~ 264 (302)
T 3s25_A 240 QRGGDNPALCVVKNDGTGFKELAKG 264 (302)
T ss_dssp EECSSSCEEEEEETTSCCCEEEEES
T ss_pred EECCCCcEEEEEECCCCccEEeeCC
Confidence 32 346777778888776665544
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.32 E-value=0.29 Score=58.24 Aligned_cols=191 Identities=13% Similarity=0.118 Sum_probs=104.9
Q ss_pred CCCCEEEEEECC----CeEEEEECCCCeEEEEE-c------CCCCCeEEEEEeC-CCCEEEEEECC------CcEEEEEC
Q 003459 69 SSEVLVAAGAAS----GTIKLWDLEEAKIVRTL-T------GHRSNCISVDFHP-FGEFFASGSLD------TNLKIWDI 130 (818)
Q Consensus 69 pdg~~Lasgs~D----G~I~IWDl~t~~~v~~l-~------~h~~~V~sv~fsp-dg~~Lasgs~D------g~I~IwDl 130 (818)
-++.+++.|+.+ ..+.+||..+++-...- . .....-.+++... ++..++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777753 46889998887644333 1 1111123334443 67777777643 35889999
Q ss_pred CCCeEEEEEecC-CCCeEEEEEcCCCCEEEEEECCC--eEEEEECCCCeEEEEEe-----cCCCCEEEEEEeCC-CCEEE
Q 003459 131 RKKGCIHTYKGH-TRGVNAIRFTPDGRWVVSGGEDN--TVKLWDLTAGKLLHDFK-----CHEGQIQCIDFHPH-EFLLA 201 (818)
Q Consensus 131 ~~~~~i~~l~~h-~~~V~~l~fspdg~~L~sgs~Dg--~I~IwDl~t~~~i~~~~-----~h~~~I~sv~fspd-g~~La 201 (818)
.+.+....-... ...-.+++...+++.++.|+.++ .+.+||..+..-...-. .......++.+..+ +.+++
T Consensus 476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 886543321111 11112333334788888888665 68999998865322111 11122233555655 67777
Q ss_pred EEeC--C-----CeEEEEECCCCe--------EEEEeC-CCCCCeeEEEEeCCCCEEEEEEC---------CCEEEEEec
Q 003459 202 TGSA--D-----RTVKFWDLETFE--------LIGSAG-PETSGVRCLTFNPDGRTLLCGLH---------ESLKVFSWE 256 (818)
Q Consensus 202 sgs~--D-----g~I~IwDl~t~~--------~i~~~~-~~~~~I~sl~fspdg~~Lasgs~---------d~I~Vwd~~ 256 (818)
.|+. + ..+.+||+.+.+ .+.... ..... .+++...++++++.|+. +.+.+||..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 634 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYG-SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPL 634 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBS-CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETT
T ss_pred ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCccc-ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECC
Confidence 7765 2 468999988765 222211 11111 23333433667776652 247888877
Q ss_pred CCce
Q 003459 257 PIRC 260 (818)
Q Consensus 257 ~~~~ 260 (818)
+.+-
T Consensus 635 t~~W 638 (695)
T 2zwa_A 635 SETL 638 (695)
T ss_dssp TTEE
T ss_pred CCeE
Confidence 6543
No 342
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.04 E-value=4 Score=43.82 Aligned_cols=141 Identities=11% Similarity=0.074 Sum_probs=78.8
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc-------CCCCCeEEEEEeCC---CCEEEEEEC--------C
Q 003459 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT-------GHRSNCISVDFHPF---GEFFASGSL--------D 122 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~-------~h~~~V~sv~fspd---g~~Lasgs~--------D 122 (818)
....|+|.|+|+.|+++...|.|++++. .++....+. ........++|+|+ +.+|.++.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 4689999999983445567899999985 343221111 12345689999996 455444432 2
Q ss_pred CcEEEEECCCC--e--EEEE-Eec------CCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCCe--
Q 003459 123 TNLKIWDIRKK--G--CIHT-YKG------HTRGVNAIRFTPDGRWVVSGGE-------------DNTVKLWDLTAGK-- 176 (818)
Q Consensus 123 g~I~IwDl~~~--~--~i~~-l~~------h~~~V~~l~fspdg~~L~sgs~-------------Dg~I~IwDl~t~~-- 176 (818)
..|..|++... . .... +.. .......|+|.|||.++++.+. .|.|.-+|....-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666766432 1 1111 111 1112357999999965555433 2467777765320
Q ss_pred ----------EEEEEecCCCCEEEEEEeC-CCCEEEE
Q 003459 177 ----------LLHDFKCHEGQIQCIDFHP-HEFLLAT 202 (818)
Q Consensus 177 ----------~i~~~~~h~~~I~sv~fsp-dg~~Las 202 (818)
....+.........++|+| ++.++++
T Consensus 178 ~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN 214 (353)
T ss_dssp TCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE
T ss_pred CCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE
Confidence 1111111123467899999 5655544
No 343
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.62 E-value=6 Score=42.62 Aligned_cols=144 Identities=11% Similarity=0.109 Sum_probs=84.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEEc----CCCCCeEEEEEeCC---CCEEEEE-E--CCCcE
Q 003459 58 HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV--RTLT----GHRSNCISVDFHPF---GEFFASG-S--LDTNL 125 (818)
Q Consensus 58 h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v--~~l~----~h~~~V~sv~fspd---g~~Lasg-s--~Dg~I 125 (818)
.-...+.|+|.|+|.++++--..|.|++++...++.. ..+. ........|+|+|+ +.+|++. + .++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 3456789999999997766544899999987666542 2221 23456789999995 3444443 2 34566
Q ss_pred EEEECCC----------CeEEE-EEec-CCCCeEEEEEcCCCCEEEEEEC-------------CCeEEEEECCCC-----
Q 003459 126 KIWDIRK----------KGCIH-TYKG-HTRGVNAIRFTPDGRWVVSGGE-------------DNTVKLWDLTAG----- 175 (818)
Q Consensus 126 ~IwDl~~----------~~~i~-~l~~-h~~~V~~l~fspdg~~L~sgs~-------------Dg~I~IwDl~t~----- 175 (818)
.-|.+.. .+.+. .+.. .......|.|.|||.+.++.+. .|.|.-++....
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~n 189 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGN 189 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTC
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCC
Confidence 6666544 12222 2221 1123457999999987776543 355555554421
Q ss_pred ----eEEEEEecCCCCEEEEEEeCCCCEEEEE
Q 003459 176 ----KLLHDFKCHEGQIQCIDFHPHEFLLATG 203 (818)
Q Consensus 176 ----~~i~~~~~h~~~I~sv~fspdg~~Lasg 203 (818)
..+... +|. ....++|+|+|.++++=
T Consensus 190 Pf~~~~i~a~-G~R-Np~Gla~dp~G~L~~~d 219 (347)
T 3das_A 190 PFPGSPVYSY-GHR-NVQGLAWDDKQRLFASE 219 (347)
T ss_dssp SSTTCCEEEB-CCS-BCCEEEECTTCCEEEEE
T ss_pred CCCCCeEEee-CCC-CcceEEECCCCCEEEEe
Confidence 112221 232 34678999987765553
No 344
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.58 E-value=2 Score=48.13 Aligned_cols=115 Identities=8% Similarity=0.111 Sum_probs=69.3
Q ss_pred cceeEEEEecCCCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE--EEecC------CCCCeEEEEEcCC---CCE
Q 003459 5 RAYKLQEFVAHSSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI--LSLSG------HTSGIDSVSFDSS---EVL 73 (818)
Q Consensus 5 r~~kl~~~~~H~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i--~~l~~------h~~~V~~l~fspd---g~~ 73 (818)
..+++..+...-...+.++|.| +++++++-...+.|.+++..++... ..+.. .......|+|+|+ +..
T Consensus 15 ~gf~~~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~ 93 (454)
T 1cru_A 15 ENFDKKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPY 93 (454)
T ss_dssp TTSCEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCE
T ss_pred CCeEEEEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCE
Confidence 3466677766666788999999 5676666544457888876545432 22221 2456779999995 555
Q ss_pred EEEEEC-------------CCeEEEEECCCC-------eEEE-EEcC-CCCCeEEEEEeCCCCEEEEEE
Q 003459 74 VAAGAA-------------SGTIKLWDLEEA-------KIVR-TLTG-HRSNCISVDFHPFGEFFASGS 120 (818)
Q Consensus 74 Lasgs~-------------DG~I~IWDl~t~-------~~v~-~l~~-h~~~V~sv~fspdg~~Lasgs 120 (818)
|+++.. ...|.-|++..+ +.+. .+.. .......|.|.|+|.++++.+
T Consensus 94 lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 94 IYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred EEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 554432 235666665332 1121 1221 123468999999998766644
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.55 E-value=2 Score=48.23 Aligned_cols=104 Identities=12% Similarity=0.175 Sum_probs=63.1
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEE--EEEcC------CCCCeEEEEEeCC---CCEEEEEEC-------
Q 003459 60 SGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIV--RTLTG------HRSNCISVDFHPF---GEFFASGSL------- 121 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v--~~l~~------h~~~V~sv~fspd---g~~Lasgs~------- 121 (818)
...+.|+|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|.++..
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999997766443347988887655432 22321 2356779999996 555554432
Q ss_pred ------CCcEEEEECCCC-------eEEEE-Eec-CCCCeEEEEEcCCCCEEEEEEC
Q 003459 122 ------DTNLKIWDIRKK-------GCIHT-YKG-HTRGVNAIRFTPDGRWVVSGGE 163 (818)
Q Consensus 122 ------Dg~I~IwDl~~~-------~~i~~-l~~-h~~~V~~l~fspdg~~L~sgs~ 163 (818)
...|.-|+.... +.+.. +.. .......|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666655321 11221 221 1234789999999987776654
No 346
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.30 E-value=2 Score=43.37 Aligned_cols=170 Identities=11% Similarity=0.002 Sum_probs=93.3
Q ss_pred CcEEEEEeCCCeEEEEECCCCc------eEEEecC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE------EE
Q 003459 29 SRVLVTGGEDHKVNLWAIGKPN------AILSLSG-HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKI------VR 95 (818)
Q Consensus 29 ~~lLatgs~Dg~V~lWdl~~~~------~i~~l~~-h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~------v~ 95 (818)
..+|++...| +++.=....+. ....+-. -=..+.+++|+|++.+.++ .+|.++-.+..+... -.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 4456666676 55554333322 1122211 1246789999999986666 688777766644111 11
Q ss_pred EEc--CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEE------EEEec-CCCCeEEEEEcCCCCEEEEEECCCe
Q 003459 96 TLT--GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCI------HTYKG-HTRGVNAIRFTPDGRWVVSGGEDNT 166 (818)
Q Consensus 96 ~l~--~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i------~~l~~-h~~~V~~l~fspdg~~L~sgs~Dg~ 166 (818)
.+- +... ..++.|.|+|.+.++ .||.|+-++-.+.... ..+.. -=..+..|.|.|+|.+.++. |+.
T Consensus 81 ~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ 155 (236)
T 1tl2_A 81 KIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ 155 (236)
T ss_dssp EEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred Eeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence 111 1111 468899999988777 5699988876432110 11111 11457999999999866665 777
Q ss_pred EEEEECCCCe------EEEEEe-cCCCCEEEEEEeCCCCEEEEEeCCCe
Q 003459 167 VKLWDLTAGK------LLHDFK-CHEGQIQCIDFHPHEFLLATGSADRT 208 (818)
Q Consensus 167 I~IwDl~t~~------~i~~~~-~h~~~I~sv~fspdg~~Lasgs~Dg~ 208 (818)
++-+..-++. ....+. ..-....-+.|.+++.+.++. +|.
T Consensus 156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~ 202 (236)
T 1tl2_A 156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK 202 (236)
T ss_dssp EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence 5443322111 011111 112234446677777666665 553
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.24 E-value=0.95 Score=57.14 Aligned_cols=193 Identities=11% Similarity=0.160 Sum_probs=116.7
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CeEEEEEcCC----CC
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE-AKIVRTLTGH----RS 102 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t-~~~v~~l~~h----~~ 102 (818)
..+++|.-. ..++.|+|+++...+..+.- ...|.-=.|-.+.. |+..+ +..|+-|++.. ..+++.|..| ..
T Consensus 76 ~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~ 151 (1630)
T 1xi4_A 76 ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC 151 (1630)
T ss_pred CcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccC
Confidence 345555554 67899999988888777664 34566666754443 33333 56799999974 3455555444 34
Q ss_pred CeEEEEEeCCCCEEEEEE-------CCCcEEEEECCCCeEEEEEecCCCCeEEEEEcC---CCCEEEEEEC---CCeEEE
Q 003459 103 NCISVDFHPFGEFFASGS-------LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTP---DGRWVVSGGE---DNTVKL 169 (818)
Q Consensus 103 ~V~sv~fspdg~~Lasgs-------~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fsp---dg~~L~sgs~---Dg~I~I 169 (818)
.|..-..+++.+.++..+ ..|.+.+|..+.+ ..+.+.||.+....+.... ....++.+.. .+.++|
T Consensus 152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi 230 (1630)
T 1xi4_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHI 230 (1630)
T ss_pred eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEE
Confidence 566666777777655433 3578999987654 3445566655443333321 1122222221 368888
Q ss_pred EECCCC---eE------EEEEec---CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCC
Q 003459 170 WDLTAG---KL------LHDFKC---HEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGP 225 (818)
Q Consensus 170 wDl~t~---~~------i~~~~~---h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~ 225 (818)
.++... .. +..+-. ...-..++..++.-.++..-+.-|.|++||+.++.++..-+-
T Consensus 231 ~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri 298 (1630)
T 1xi4_A 231 IEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI 298 (1630)
T ss_pred EecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccc
Confidence 887542 11 111111 122234677777767888888899999999999988765443
No 348
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.80 E-value=0.39 Score=48.55 Aligned_cols=140 Identities=12% Similarity=0.063 Sum_probs=81.1
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceE------EEec--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAI------LSLS--GHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE 89 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i------~~l~--~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~ 89 (818)
.+.+++|+| ++.+.++ .+|.++-.+..+.... ..+- +-.. ..++.|.++|.+.++ .||.|+-|+-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 677999999 6765555 6777666555332111 1110 1111 478999999988877 56999888763
Q ss_pred CCeE-------EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCe------EEEEEe-cCCCCeEEEEEcCCC
Q 003459 90 EAKI-------VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKG------CIHTYK-GHTRGVNAIRFTPDG 155 (818)
Q Consensus 90 t~~~-------v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~------~i~~l~-~h~~~V~~l~fspdg 155 (818)
+... ...-.+--..+..|.|.|+|.+.++. |+.++-+....+. ....+. ..-.....+.|.++|
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G 193 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVG 193 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTS
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCC
Confidence 3110 11111122467899999999877776 7776544333211 111111 222234456688888
Q ss_pred CEEEEEECCCeE
Q 003459 156 RWVVSGGEDNTV 167 (818)
Q Consensus 156 ~~L~sgs~Dg~I 167 (818)
...++. +|.+
T Consensus 194 ~l~~v~--~g~~ 203 (236)
T 1tl2_A 194 TLFGVQ--GGKF 203 (236)
T ss_dssp CEEEEE--TTEE
T ss_pred cEEEEe--CCeE
Confidence 766655 6643
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.55 E-value=1.4 Score=45.92 Aligned_cols=221 Identities=14% Similarity=0.064 Sum_probs=109.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEe
Q 003459 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYK 140 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~ 140 (818)
.|..++..... .++. . ||.|+.|-......+..-......|..++... .+.+.-. ||.|+.|-......+-.-.
T Consensus 25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLALK-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEEE-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEEE-CCEEEEeeCCCCCCCCCCc
Confidence 56777764332 2333 5 89999997553211111011123566666553 2333335 8999999765322111101
Q ss_pred cCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEE
Q 003459 141 GHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELI 220 (818)
Q Consensus 141 ~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i 220 (818)
.-...|..++...+ +.+.-. +|.|+.|-....-.+-.-......|..++...+. .++ -. ||.|+.|-......+
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gql 172 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQT 172 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCC
Confidence 11245777776643 344445 9999999765421111111123456666654433 223 23 799999976542221
Q ss_pred EEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEecCCceeccccccccceeeeeecCCCEEEEEEcCCeEEEEEec
Q 003459 221 GSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVD 297 (818)
Q Consensus 221 ~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~~~~~~~~~~~~~~~v~~l~~~~g~lLatg~~Dg~V~IWdvd 297 (818)
..-......|..++...+- .++. .++.+..|-.+..-....-......+..+..-....++.. ||.|+.|--.
T Consensus 173 g~p~~~~~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al~--~g~v~~wG~n 245 (282)
T 3qhy_B 173 TVPAEAQSGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLALK--NGKVIAWGSS 245 (282)
T ss_dssp SCCGGGGSSEEEEEECSSE-EEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEEE--TTEEEEESTT
T ss_pred CCceecCCCeEEEEecCCE-EEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEEE--CCEEEEecCC
Confidence 1111112456666654332 3334 5555555554433222111122334555555445555555 9999999544
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.95 E-value=3.7 Score=42.74 Aligned_cols=221 Identities=14% Similarity=0.089 Sum_probs=110.5
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEE
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTL 97 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l 97 (818)
.|..++... ...++. . ||.|+.|-......+-.-......|..++..... .++. . ||.|+.|-......+..-
T Consensus 25 ~i~~ia~G~--~h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~P 97 (282)
T 3qhy_B 25 GVDAIAGGY--FHGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTVP 97 (282)
T ss_dssp SCCEEEECS--SEEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCCC
T ss_pred CCcEEEeCC--CeEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCCC
Confidence 577777653 333444 4 8999999764322111001112357777765433 3333 4 899999976532111110
Q ss_pred cCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCeE
Q 003459 98 TGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKL 177 (818)
Q Consensus 98 ~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~ 177 (818)
..-...|..++... .+.+.-. ||.|+.|-......+-.-......|..++...+ +.+.-. ||.|+.|-......
T Consensus 98 ~~~~~~v~~ia~G~--~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gq 171 (282)
T 3qhy_B 98 AEARSGVDAIAAGA--WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQ 171 (282)
T ss_dssp GGGSSSEEEEEEET--TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTST
T ss_pred cccCCCeEEEECcC--CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCC
Confidence 11124577776653 4444555 999999976542211111112345766666533 233334 79999997654211
Q ss_pred EEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCCCEEEEEECCCEEEEEec
Q 003459 178 LHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDGRTLLCGLHESLKVFSWE 256 (818)
Q Consensus 178 i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d~I~Vwd~~ 256 (818)
+..-......|..++.-.+. .++. .||.|+.|-....-.+..-......|..++...+ ..++.. ++.+..|-.+
T Consensus 172 lg~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~-h~~al~-~g~v~~wG~n 245 (282)
T 3qhy_B 172 TTVPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW-YSLALK-NGKVIAWGSS 245 (282)
T ss_dssp TSCCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS-CEEEEE-TTEEEEESTT
T ss_pred CCCceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCC-EEEEEE-CCEEEEecCC
Confidence 11000112457777654443 3333 4899999976543222111111234666665543 344444 5544444433
No 351
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=90.25 E-value=22 Score=38.15 Aligned_cols=183 Identities=7% Similarity=-0.074 Sum_probs=91.1
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCC----eEEEEECCCCceEEEecC--------------CCCCeEEEEEcCC--CCEEE
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDH----KVNLWAIGKPNAILSLSG--------------HTSGIDSVSFDSS--EVLVA 75 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg----~V~lWdl~~~~~i~~l~~--------------h~~~V~~l~fspd--g~~La 75 (818)
...|.+|++.|.+...|.+++..| .|...+ +.++....+.. +...|.++++.|. ...|+
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 456999999984444455555454 344332 22332222221 1124778899862 44555
Q ss_pred EEECCCeEEEEECCCCeEEEEEcC-------------------CCCCeEEEEEeCC-CCEEEEEECCCcEEEEECCCCeE
Q 003459 76 AGAASGTIKLWDLEEAKIVRTLTG-------------------HRSNCISVDFHPF-GEFFASGSLDTNLKIWDIRKKGC 135 (818)
Q Consensus 76 sgs~DG~I~IWDl~t~~~v~~l~~-------------------h~~~V~sv~fspd-g~~Lasgs~Dg~I~IwDl~~~~~ 135 (818)
+++..+.|...+ ..++....+.. ....+.+|.+.|. ...|+++..++.|+..+- .++.
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~t 210 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTD 210 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSS
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCCC
Confidence 665566555543 22332222211 1235788999874 345555554554554432 2222
Q ss_pred EEEEec-----C--------CCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCeEEEEEec-C-C---CCEEEEEEeCC
Q 003459 136 IHTYKG-----H--------TRGVNAIRFTPD-GRWVVSGGEDNTVKLWDLTAGKLLHDFKC-H-E---GQIQCIDFHPH 196 (818)
Q Consensus 136 i~~l~~-----h--------~~~V~~l~fspd-g~~L~sgs~Dg~I~IwDl~t~~~i~~~~~-h-~---~~I~sv~fspd 196 (818)
-..+.. + ...+.++.+.|+ ...|+++...+ |...+ ..++....+.. . . ..+.++.++|.
T Consensus 211 W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~ 288 (394)
T 3b7f_A 211 WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQR 288 (394)
T ss_dssp CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCCCCCCCCccceEEEEECCC
Confidence 222211 0 124889999985 46677776544 44444 23433333321 1 1 24567888763
Q ss_pred -CCEEEEE
Q 003459 197 -EFLLATG 203 (818)
Q Consensus 197 -g~~Lasg 203 (818)
...|+++
T Consensus 289 ~~~~l~~~ 296 (394)
T 3b7f_A 289 DPRTVWVF 296 (394)
T ss_dssp CTTCEEEE
T ss_pred CCCEEEEE
Confidence 3344444
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=89.89 E-value=28 Score=38.82 Aligned_cols=247 Identities=11% Similarity=0.094 Sum_probs=129.6
Q ss_pred ceeEEEEecCCCCEEEEEEeeCCC-cEEEEEeCCCeEEEEECCCC---ceEEEec---------CCCCCeEEEEEcCC--
Q 003459 6 AYKLQEFVAHSSTVNCLKIGRKSS-RVLVTGGEDHKVNLWAIGKP---NAILSLS---------GHTSGIDSVSFDSS-- 70 (818)
Q Consensus 6 ~~kl~~~~~H~~~V~~lafsp~~~-~lLatgs~Dg~V~lWdl~~~---~~i~~l~---------~h~~~V~~l~fspd-- 70 (818)
.+++..+..--..-+.|+|.|++. ++|+ +...|.|++++.... ..+..+. ........|+|+|+
T Consensus 3 gf~v~~va~gL~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~ 81 (463)
T 2wg3_C 3 CFCIQEVVSGLRQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYK 81 (463)
T ss_dssp CEEEEEEEEEESSEEEEECCSSSSCCEEE-EETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred ceEEEEeccCCCCceEEEECCCCCeEEEE-EeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCc
Confidence 355666655556788999999654 4554 557899999975322 1222222 11457889999996
Q ss_pred --CCEEEEEEC--C----------CeEEEEECCC----------CeEEEEEc--CCCCCeEEEEEeCCCCEEEEEECCC-
Q 003459 71 --EVLVAAGAA--S----------GTIKLWDLEE----------AKIVRTLT--GHRSNCISVDFHPFGEFFASGSLDT- 123 (818)
Q Consensus 71 --g~~Lasgs~--D----------G~I~IWDl~t----------~~~v~~l~--~h~~~V~sv~fspdg~~Lasgs~Dg- 123 (818)
+.+.++-+. + ..|.-|.+.. .+.+..+. ........|.|.|||.++++.+..+
T Consensus 82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~ 161 (463)
T 2wg3_C 82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMI 161 (463)
T ss_dssp HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTC
T ss_pred CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCC
Confidence 333333221 1 1455566542 23333332 2223467899999998766654432
Q ss_pred ----------------cEEEEECCCC---------------------eEEEEEecCCCCeEEEEEcCC-----CC-EEEE
Q 003459 124 ----------------NLKIWDIRKK---------------------GCIHTYKGHTRGVNAIRFTPD-----GR-WVVS 160 (818)
Q Consensus 124 ----------------~I~IwDl~~~---------------------~~i~~l~~h~~~V~~l~fspd-----g~-~L~s 160 (818)
.|.-.|.... ..+..+ +|.. ...++|.|. |. +++.
T Consensus 162 ~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~-G~RN-p~gla~dp~tg~~~G~l~~~~ 239 (463)
T 2wg3_C 162 TLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAH-GLHD-PGRCAVDRHPTDININLTILC 239 (463)
T ss_dssp CHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEE-CCSS-CCBEEEESSCSSTTCSEEEEE
T ss_pred CCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEE-CCCC-cceEEECCCCCCcccceEEEe
Confidence 2333343331 012222 3444 457899986 34 4554
Q ss_pred EECCC----eEEEEECCCC------eEEEEEecCC-CCEEEEEEeCC-------CCEEEEEeCCCeEEEEECCCCe---E
Q 003459 161 GGEDN----TVKLWDLTAG------KLLHDFKCHE-GQIQCIDFHPH-------EFLLATGSADRTVKFWDLETFE---L 219 (818)
Q Consensus 161 gs~Dg----~I~IwDl~t~------~~i~~~~~h~-~~I~sv~fspd-------g~~Lasgs~Dg~I~IwDl~t~~---~ 219 (818)
+...| .-.|..+..+ .++..+..|. ..+..+.|... +.+| ++...+.|....++... .
T Consensus 240 ~D~~G~~~~~~ei~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f-~~~~~g~i~~~~~~~~~~~~~ 318 (463)
T 2wg3_C 240 SDSNGKNRSSARILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYV-FGDRNGNFLTLQQSPVTKQWQ 318 (463)
T ss_dssp ECC------CEEEEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEE-EEETTSCEEEEEC-----CCE
T ss_pred cccCCCCCCCCeEeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEE-EecCCCcEEEEEeCCCCceee
Confidence 43212 1233333322 2344444221 46778877542 3344 44445777666664331 1
Q ss_pred EEEe---------CCCCCCeeEEEEeCCCCEEEEEEC------CCEEEEEec
Q 003459 220 IGSA---------GPETSGVRCLTFNPDGRTLLCGLH------ESLKVFSWE 256 (818)
Q Consensus 220 i~~~---------~~~~~~I~sl~fspdg~~Lasgs~------d~I~Vwd~~ 256 (818)
...+ ......+.++.+.|||.++++... ..-+||-+.
T Consensus 319 ~~~~~~g~~~~~~~~~~~r~~~v~~~pdG~Lyv~~~~~~~~~~~~G~I~Ri~ 370 (463)
T 2wg3_C 319 EKPLCLGTSGSCRGYFSGHILGFGEDELGEVYILSSSKSMTQTHNGKLYKIV 370 (463)
T ss_dssp EEEECEEETTSSCSCCCSEEEEEEECTTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred EEEeecCCcccccccccCcceEEEECCCCCEEEEeccCCcccCCCCcEEEec
Confidence 1111 112356899999999988887652 345788775
No 353
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.72 E-value=26 Score=38.12 Aligned_cols=181 Identities=8% Similarity=0.094 Sum_probs=107.0
Q ss_pred eEEEEECCCC--ceEEEecC------CCCCeEEEEEc---CC----CCEEEEEE-CCCeEEEEECCCCeEEEEEcCCCCC
Q 003459 40 KVNLWAIGKP--NAILSLSG------HTSGIDSVSFD---SS----EVLVAAGA-ASGTIKLWDLEEAKIVRTLTGHRSN 103 (818)
Q Consensus 40 ~V~lWdl~~~--~~i~~l~~------h~~~V~~l~fs---pd----g~~Lasgs-~DG~I~IWDl~t~~~v~~l~~h~~~ 103 (818)
+|.+||+.++ +.++.+.- ....+..+.+. +. +.+++.+. ..+-|.++|+.+++..+.+. ..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~--~~- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTH--PT- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEEC--GG-
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEcc--CC-
Confidence 6889999999 88887653 23467888887 22 34555444 36789999999999888763 21
Q ss_pred eEEEEEeCCCCEEEEEECCCcEEEEECCCCeEEEEEecCCCCeEEEEEcCC----CCEEEEEECCCe-EEEEE---CCCC
Q 003459 104 CISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPD----GRWVVSGGEDNT-VKLWD---LTAG 175 (818)
Q Consensus 104 V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~~~i~~l~~h~~~V~~l~fspd----g~~L~sgs~Dg~-I~IwD---l~t~ 175 (818)
|.|+....+. .+|.-.- + ...+..|+++|+ +++|+-....+. ++-.. ++..
T Consensus 201 -----~~pd~~~~~~--i~G~~~~-----------~---~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~ 259 (381)
T 3q6k_A 201 -----FKAERPTKFD--YGGKEYE-----------F---KAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQK 259 (381)
T ss_dssp -----GSCCSCEEEE--ETTEEEE-----------E---CCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSST
T ss_pred -----CccccCcceE--ECCEEeE-----------e---ccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCc
Confidence 3444111111 1232111 1 245889999997 788887766553 33222 1211
Q ss_pred ---eEEEEEecC--CCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCC-----C--eEEEEeCCCCCCeeEEEEeCCCCEE
Q 003459 176 ---KLLHDFKCH--EGQIQCIDFH-PHEFLLATGSADRTVKFWDLET-----F--ELIGSAGPETSGVRCLTFNPDGRTL 242 (818)
Q Consensus 176 ---~~i~~~~~h--~~~I~sv~fs-pdg~~Lasgs~Dg~I~IwDl~t-----~--~~i~~~~~~~~~I~sl~fspdg~~L 242 (818)
..+..+... ...-..+++. .+|.++++--....|..|+..+ . ..+.. ...-..+..+.+..+|.+.
T Consensus 260 ~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~-d~~l~~pd~~~i~~~g~Lw 338 (381)
T 3q6k_A 260 GGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYT-SSRFVFGTDISVDSKGGLW 338 (381)
T ss_dssp TCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEE-CTTCCSEEEEEECTTSCEE
T ss_pred chhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEE-CCCccccCeEEECCCCeEE
Confidence 122222211 1344456675 5787777777888999999875 1 22222 2234457778887777654
Q ss_pred EEE
Q 003459 243 LCG 245 (818)
Q Consensus 243 asg 245 (818)
+..
T Consensus 339 v~s 341 (381)
T 3q6k_A 339 FMS 341 (381)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 354
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=86.76 E-value=37 Score=36.38 Aligned_cols=210 Identities=13% Similarity=0.015 Sum_probs=103.3
Q ss_pred CcEEEEEeCCCeEEEEECCC-CceEEEe--cCCCCCeEEEEEcC--CCCEEEEEECCC----eEEEEECCCCeEEEEEcC
Q 003459 29 SRVLVTGGEDHKVNLWAIGK-PNAILSL--SGHTSGIDSVSFDS--SEVLVAAGAASG----TIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 29 ~~lLatgs~Dg~V~lWdl~~-~~~i~~l--~~h~~~V~~l~fsp--dg~~Lasgs~DG----~I~IWDl~t~~~v~~l~~ 99 (818)
...|++|...| +.+++... +.....+ ......|.+|+++| .+.++ +++..| .|...+ +.++....+..
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~-~g~~~g~~g~gl~~s~-D~G~tW~~~~~ 98 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERML-MAARTGHLGPTVFRSD-DGGGNWTEATR 98 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEE-EEEEC--CCEEEEEES-STTSCCEECSB
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEE-EEecCCCCCccEEEeC-CCCCCceECCc
Confidence 44677787777 55555432 2222222 12345799999998 45444 444444 444332 23332222211
Q ss_pred --------------CCCCeEEEEEeCC--CCEEEEEECCCcEEEEECCCCeEEEEEec-------------------CCC
Q 003459 100 --------------HRSNCISVDFHPF--GEFFASGSLDTNLKIWDIRKKGCIHTYKG-------------------HTR 144 (818)
Q Consensus 100 --------------h~~~V~sv~fspd--g~~Lasgs~Dg~I~IwDl~~~~~i~~l~~-------------------h~~ 144 (818)
....|.++++.|. ...+.++...+.|+..+- .++.-..+.. ...
T Consensus 99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCC
Confidence 1124778888873 455666655666665542 2222122211 123
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECCCCeEEEEEecC-------------CCCEEEEEEeCC-CCEEEEEeCCCeE
Q 003459 145 GVNAIRFTP-DGRWVVSGGEDNTVKLWDLTAGKLLHDFKCH-------------EGQIQCIDFHPH-EFLLATGSADRTV 209 (818)
Q Consensus 145 ~V~~l~fsp-dg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~h-------------~~~I~sv~fspd-g~~Lasgs~Dg~I 209 (818)
.+.+|.+.| +...|+.+..++.|...+ ..++....+... ...+.++.++|. ...|+++...+ |
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 578999987 344555555555444432 223322222110 124889999986 35666666544 5
Q ss_pred EEEECCCCeEEEEeCC--CC---CCeeEEEEeCC-CCEEEEE
Q 003459 210 KFWDLETFELIGSAGP--ET---SGVRCLTFNPD-GRTLLCG 245 (818)
Q Consensus 210 ~IwDl~t~~~i~~~~~--~~---~~I~sl~fspd-g~~Lasg 245 (818)
...+- .++.-..+.. .. ..+.++.++|. ...|.++
T Consensus 256 ~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~ 296 (394)
T 3b7f_A 256 YRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVF 296 (394)
T ss_dssp EEEET-TTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred EEeCC-CCCcceECCCCCCCCCccceEEEEECCCCCCEEEEE
Confidence 44442 2333222221 11 33567778763 3334443
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=80.30 E-value=68 Score=34.74 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=85.5
Q ss_pred CeEEEEECCCC--eEEEEEecC------CCCEEEEEEe---CC----CCEEEEEe-CCCeEEEEECCCCeEEEEeC----
Q 003459 165 NTVKLWDLTAG--KLLHDFKCH------EGQIQCIDFH---PH----EFLLATGS-ADRTVKFWDLETFELIGSAG---- 224 (818)
Q Consensus 165 g~I~IwDl~t~--~~i~~~~~h------~~~I~sv~fs---pd----g~~Lasgs-~Dg~I~IwDl~t~~~i~~~~---- 224 (818)
-.|.+||+.++ +.++.+... .+.+..+.+. |+ +.+++.+. ..+.|.+||+.+++.-....
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 36788999998 888887642 3457888887 22 34444444 46789999999876544331
Q ss_pred CC--------------CCCeeEEEEeCC----CCEEEEEECCCEEEEEecCCce-----eccc-cccc----cceeeeee
Q 003459 225 PE--------------TSGVRCLTFNPD----GRTLLCGLHESLKVFSWEPIRC-----HDAV-DVGW----SRLSDLNV 276 (818)
Q Consensus 225 ~~--------------~~~I~sl~fspd----g~~Lasgs~d~I~Vwd~~~~~~-----~~~~-~~~~----~~v~~l~~ 276 (818)
+. ..++..|+++|+ ++.|+...-.+-++|.+.+.-. ...+ ..+. ..-..+..
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~ 282 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAY 282 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEE
Confidence 11 247889999998 8899887766667887753211 1111 1111 11112222
Q ss_pred --cCCCEEEEEEcCCeEEEEEecC
Q 003459 277 --HEGKLLGCSYNQSCVGVWVVDI 298 (818)
Q Consensus 277 --~~g~lLatg~~Dg~V~IWdvd~ 298 (818)
.+|.++++-.+.+.|..|+.+.
T Consensus 283 D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 283 DPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp CTTTCEEEEEESSSSEEEEEETTS
T ss_pred eCCCCeEEEEeccCCeEEEEeCCC
Confidence 3566677777888999999876
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=80.27 E-value=64 Score=34.14 Aligned_cols=195 Identities=9% Similarity=0.029 Sum_probs=111.8
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEEC---C------CCceEEE---ecCCCCCeEEEEE-cC--CCCEEEEEECCCe
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAI---G------KPNAILS---LSGHTSGIDSVSF-DS--SEVLVAAGAASGT 82 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl---~------~~~~i~~---l~~h~~~V~~l~f-sp--dg~~Lasgs~DG~ 82 (818)
.+..+.... ....|+.-+..|.++-... . .|..+.. +. ....|.++.. .. ++.+++..+.+|.
T Consensus 43 ~~~~~~~~~-t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~G~ 120 (327)
T 3uc1_A 43 IVAHFFVCS-THDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRNGL 120 (327)
T ss_dssp CEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETTSE
T ss_pred EEEEEEEeC-CCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCCCE
Confidence 344444444 3344555566677665543 2 1222111 22 2345555544 32 5779999999999
Q ss_pred EEEEECCCC-------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC--CC---------eEEEEEecCCC
Q 003459 83 IKLWDLEEA-------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR--KK---------GCIHTYKGHTR 144 (818)
Q Consensus 83 I~IWDl~t~-------~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~--~~---------~~i~~l~~h~~ 144 (818)
|+...+... .....+.. .+.+..+........|+..+..|.+..+... .- .....+. ...
T Consensus 121 iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d 198 (327)
T 3uc1_A 121 VKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDD 198 (327)
T ss_dssp EEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTC
T ss_pred EEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCC
Confidence 999887542 22223333 3455555555566788889999998888766 21 1111122 245
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CeEEEEEe--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 003459 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTA-------GKLLHDFK--CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (818)
Q Consensus 145 ~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t-------~~~i~~~~--~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (818)
.|.++...+++.+|+..+..|.++.-.+.. ++-+..++ ...+.+..+....+...++..+.+|.+.-++..
T Consensus 199 ~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 199 RLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp CEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 577777666677899999999999887542 12222222 113345554444444556666677777777654
Q ss_pred C
Q 003459 216 T 216 (818)
Q Consensus 216 t 216 (818)
.
T Consensus 279 ~ 279 (327)
T 3uc1_A 279 Q 279 (327)
T ss_dssp G
T ss_pred h
Confidence 3
No 357
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=79.97 E-value=49 Score=35.02 Aligned_cols=157 Identities=10% Similarity=-0.000 Sum_probs=94.3
Q ss_pred CCCEEEEEEeeC--CCcEEEEEeCCCeEEEEECCC-------CceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 16 SSTVNCLKIGRK--SSRVLVTGGEDHKVNLWAIGK-------PNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 16 ~~~V~~lafsp~--~~~lLatgs~Dg~V~lWdl~~-------~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
...|.++..-++ ...++++.+.+|.++-..+.. +.....+.. .+.+..+........|+..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 345665544332 366899999999999987643 222223333 3455555555556678888899999888
Q ss_pred ECC--CCeE-------EEEEc-CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-------eEEEEEe--cCCCCeE
Q 003459 87 DLE--EAKI-------VRTLT-GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-------GCIHTYK--GHTRGVN 147 (818)
Q Consensus 87 Dl~--t~~~-------v~~l~-~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-------~~i~~l~--~h~~~V~ 147 (818)
... .-.. +..+. .....|.++...+.+.+++..+..|.++.-.+... +-+..++ ...+.+.
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv 252 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLV 252 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEE
T ss_pred ECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEE
Confidence 776 2111 11111 13445777766666778999999999998875421 2222222 2134455
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECC
Q 003459 148 AIRFTPDGRWVVSGGEDNTVKLWDLT 173 (818)
Q Consensus 148 ~l~fspdg~~L~sgs~Dg~I~IwDl~ 173 (818)
.+....+...++..+.+|.+.-++..
T Consensus 253 ~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 253 GALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp EEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEEeCCCccEEEEcCCCeEEEEehh
Confidence 54444445567777778877777654
No 358
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=79.87 E-value=58 Score=33.47 Aligned_cols=199 Identities=10% Similarity=-0.044 Sum_probs=116.3
Q ss_pred EEecCC---CCEEEEEEeeCCCcEEEEEeCCCeEEEEEC---CCC--ceEEEecCCCCCeEEEEEcC-CCCEEEEEECCC
Q 003459 11 EFVAHS---STVNCLKIGRKSSRVLVTGGEDHKVNLWAI---GKP--NAILSLSGHTSGIDSVSFDS-SEVLVAAGAASG 81 (818)
Q Consensus 11 ~~~~H~---~~V~~lafsp~~~~lLatgs~Dg~V~lWdl---~~~--~~i~~l~~h~~~V~~l~fsp-dg~~Lasgs~DG 81 (818)
..++|. +.+..+...... ..|+.-+.+|.++--.+ ... ..+ +. ....|..+.... ++.+++..+.+|
T Consensus 15 ~~~g~~~~gD~~~~~~~~~t~-~~ll~fT~~G~v~~~~~~~lp~~~~~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G 90 (276)
T 3no0_A 15 PVEELPLEKAPVVNILRVPFT-EGLFLVSNRGRVYWIAGSQALQGSKVSL--KS-REEKIVGAFIREKFGNRLLLATKKG 90 (276)
T ss_dssp EGGGCCSSCCCEEEEEEEETT-SCEEEEETTSEEEEECSHHHHTSEECCC--SS-TTCCEEEEEEGGGSCSEEEEEETTS
T ss_pred eccCCCCCCCeEEEEEEECCC-CEEEEEcCCCeEEEEEhhhCccCccccc--CC-CCCEEEEEECCcCCCCEEEEEeCCC
Confidence 345553 456666655533 34556667787775443 211 112 33 355666664421 467899999999
Q ss_pred eEEEEECCCC------eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC---------CeEEEEEecCCCCe
Q 003459 82 TIKLWDLEEA------KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---------KGCIHTYKGHTRGV 146 (818)
Q Consensus 82 ~I~IWDl~t~------~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~---------~~~i~~l~~h~~~V 146 (818)
.|+...+..- .....+. ..+.+..+........++..+..|.++.+.... |.....+. ....|
T Consensus 91 ~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~v 168 (276)
T 3no0_A 91 YVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDET 168 (276)
T ss_dssp EEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCE
T ss_pred EEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEE
Confidence 9999987543 2222233 234555555555667888899999988887532 11222232 23556
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCC-------CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEE--EECCC
Q 003459 147 NAIRFTPDGRWVVSGGEDNTVKLWDLTA-------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKF--WDLET 216 (818)
Q Consensus 147 ~~l~fspdg~~L~sgs~Dg~I~IwDl~t-------~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~I--wDl~t 216 (818)
..+...+++..++..+..|.++...+.. ++-+..+. ..+.+..+.....+..++..+.+|.+.. ++...
T Consensus 169 v~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~-~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 169 SGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG-TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC-SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc-CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence 6666556677899999999999887642 22233332 2344544443334445666667777776 76543
No 359
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=76.51 E-value=99 Score=34.31 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=61.2
Q ss_pred CeEEEEEcCCCC-EEEEEECCCeEEEEECCCC---eEEEEEc---------CCCCCeEEEEEeCC----CCEEEEEEC--
Q 003459 61 GIDSVSFDSSEV-LVAAGAASGTIKLWDLEEA---KIVRTLT---------GHRSNCISVDFHPF----GEFFASGSL-- 121 (818)
Q Consensus 61 ~V~~l~fspdg~-~Lasgs~DG~I~IWDl~t~---~~v~~l~---------~h~~~V~sv~fspd----g~~Lasgs~-- 121 (818)
.-+.|+|.|++. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 4555678999999975422 1222221 11356789999996 333333221
Q ss_pred C----------CcEEEEECCC----------CeEEEEEe--cCCCCeEEEEEcCCCCEEEEEECC
Q 003459 122 D----------TNLKIWDIRK----------KGCIHTYK--GHTRGVNAIRFTPDGRWVVSGGED 164 (818)
Q Consensus 122 D----------g~I~IwDl~~----------~~~i~~l~--~h~~~V~~l~fspdg~~L~sgs~D 164 (818)
+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 1 1344455532 23344433 122346789999999877776654
No 360
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=75.48 E-value=83 Score=32.89 Aligned_cols=185 Identities=8% Similarity=0.017 Sum_probs=110.9
Q ss_pred CCcEEEEEeCCCeEEEEECCCCc-------eE--EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC---CeEE-
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPN-------AI--LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEE---AKIV- 94 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~-------~i--~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t---~~~v- 94 (818)
+..++++.+.+|.|+-..+..-. -+ ..+. ..+.+..+........++..+..|.++-+.... ....
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~ 85 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRAS 85 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC-----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccC
Confidence 45678889999999988653221 11 1122 234455555555556677778899877766532 1100
Q ss_pred --------EEEcCCCCCeEEEEEeC---CCCEEEEEECCCcEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCC
Q 003459 95 --------RTLTGHRSNCISVDFHP---FGEFFASGSLDTNLKIWDIRK-------KGCIHTYKGHTRGVNAIRFTPDGR 156 (818)
Q Consensus 95 --------~~l~~h~~~V~sv~fsp---dg~~Lasgs~Dg~I~IwDl~~-------~~~i~~l~~h~~~V~~l~fspdg~ 156 (818)
..+. ....|..+...+ ...+|+..+.+|.++...+.. +.....+.. .+.+..+....++.
T Consensus 86 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~ 163 (312)
T 1suu_A 86 KGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDE 163 (312)
T ss_dssp --CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTC
T ss_pred CCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCC
Confidence 0111 223455554333 466888999999999887742 222222333 45566666655566
Q ss_pred EEEEEECCCeEEEEECCC---------CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 003459 157 WVVSGGEDNTVKLWDLTA---------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t---------~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t 216 (818)
.++..+.+|.+..+.... |.....+. ....|..+....++..|++.+..|..+..++..
T Consensus 164 ~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 164 KVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 788899999998887643 22222222 234566666555666788888999999988754
No 361
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=70.60 E-value=1.7e+02 Score=34.37 Aligned_cols=220 Identities=10% Similarity=0.027 Sum_probs=113.1
Q ss_pred EEE-EeeCCCcEEEEEeCCC----eEEEEECCCCceEEE-ec-CCCC------CeEEEEEcCCCCEEEEE----------
Q 003459 21 CLK-IGRKSSRVLVTGGEDH----KVNLWAIGKPNAILS-LS-GHTS------GIDSVSFDSSEVLVAAG---------- 77 (818)
Q Consensus 21 ~la-fsp~~~~lLatgs~Dg----~V~lWdl~~~~~i~~-l~-~h~~------~V~~l~fspdg~~Lasg---------- 77 (818)
.+. ++|++.+++++-+..| .++++|+.+++.+.. +. .-.. ....++|..++.++++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~ 212 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSS 212 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTT
T ss_pred ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcC
Confidence 444 7786666666555443 699999988876521 11 0000 11344786334344331
Q ss_pred ECCCeEEEEECCCCe--EEEEEcCCCCCe-EEEEEeCCCCE-----EEEEECC---CcEEEEECCC--CeEEEEEecCCC
Q 003459 78 AASGTIKLWDLEEAK--IVRTLTGHRSNC-ISVDFHPFGEF-----FASGSLD---TNLKIWDIRK--KGCIHTYKGHTR 144 (818)
Q Consensus 78 s~DG~I~IWDl~t~~--~v~~l~~h~~~V-~sv~fspdg~~-----Lasgs~D---g~I~IwDl~~--~~~i~~l~~h~~ 144 (818)
+...+|+.|.+.+.. -...+.+....+ .....++++.+ +++.+.+ ..+++.|... ++ +..+.....
T Consensus 213 ~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 291 (711)
T 4hvt_A 213 LYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD 291 (711)
T ss_dssp SSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT
T ss_pred CCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc
Confidence 112578899876542 233344333332 33445666652 4443322 4567777653 33 233322222
Q ss_pred CeEEEEEcCCCCEEEEE----------ECCCeEEEEECCCCe-------EEEE-Eec-CCCCEEEEEEeCCCCEEEEEeC
Q 003459 145 GVNAIRFTPDGRWVVSG----------GEDNTVKLWDLTAGK-------LLHD-FKC-HEGQIQCIDFHPHEFLLATGSA 205 (818)
Q Consensus 145 ~V~~l~fspdg~~L~sg----------s~Dg~I~IwDl~t~~-------~i~~-~~~-h~~~I~sv~fspdg~~Lasgs~ 205 (818)
. .+..+.++.+++.. ...+.|...|+.++. .... +.. ....+..+.|..+ .++++...
T Consensus 292 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~ 368 (711)
T 4hvt_A 292 A--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYD 368 (711)
T ss_dssp C--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEE
T ss_pred c--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEE
Confidence 1 12333455444422 246778999987631 1222 322 2345778888876 57777777
Q ss_pred CCe--EEEEECCCCe-EEEE-eCC-CCCCeeEEEEeCCCCEEEE
Q 003459 206 DRT--VKFWDLETFE-LIGS-AGP-ETSGVRCLTFNPDGRTLLC 244 (818)
Q Consensus 206 Dg~--I~IwDl~t~~-~i~~-~~~-~~~~I~sl~fspdg~~Las 244 (818)
++. |.++|+.+++ .+.. +.. ..+.+....+++++..++.
T Consensus 369 ~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~ 412 (711)
T 4hvt_A 369 NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALI 412 (711)
T ss_dssp TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEE
T ss_pred CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEE
Confidence 764 6777776664 1222 222 1345666667777655443
No 362
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=67.24 E-value=2.1e+02 Score=34.01 Aligned_cols=147 Identities=10% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCCEEEEEEeeCCCcEEEEEeCCCeEEEEECCCCceEEEecCC-------CCCeEEEEEcCCC-CEEEEEECCCe----E
Q 003459 16 SSTVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGH-------TSGIDSVSFDSSE-VLVAAGAASGT----I 83 (818)
Q Consensus 16 ~~~V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~~~i~~l~~h-------~~~V~~l~fspdg-~~Lasgs~DG~----I 83 (818)
.+.|.+|+++|.+...++++...+.|...+ +.++.-..+..+ ...|.+|+++|.. ..++++..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 468999999997767778888777776655 334444444332 2469999998843 44444443211 2
Q ss_pred EEE-ECCCCeEEEEEcCC-------C--CCeEEEEEeCCC-CEEEEEECCCcEEEEECCCCeEEEEEec------CCCCe
Q 003459 84 KLW-DLEEAKIVRTLTGH-------R--SNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIHTYKG------HTRGV 146 (818)
Q Consensus 84 ~IW-Dl~t~~~v~~l~~h-------~--~~V~sv~fspdg-~~Lasgs~Dg~I~IwDl~~~~~i~~l~~------h~~~V 146 (818)
.|| ..+.|+....+... . ..+..++++|.. ..++.+...+.|+. ....++.-..+.. ....+
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~~ 171 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIGY 171 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTCE
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCCe
Confidence 333 33445444333210 1 134568888754 45556653444322 2222222122211 12457
Q ss_pred EEEEEcC-CCCEEEEEECC
Q 003459 147 NAIRFTP-DGRWVVSGGED 164 (818)
Q Consensus 147 ~~l~fsp-dg~~L~sgs~D 164 (818)
..+.++| ++..++++..+
T Consensus 172 ~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 172 TSVIFDPERNGTIYASATA 190 (789)
T ss_dssp EEEEECTTSTTCEEEEESS
T ss_pred EEEEECCCCCCEEEEEEcC
Confidence 8899988 44566666654
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=64.43 E-value=1.3e+02 Score=30.75 Aligned_cols=154 Identities=8% Similarity=0.025 Sum_probs=92.3
Q ss_pred CCCEEEEEEeeC-CCcEEEEEeCCCeEEEEECCCC------ceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 003459 16 SSTVNCLKIGRK-SSRVLVTGGEDHKVNLWAIGKP------NAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDL 88 (818)
Q Consensus 16 ~~~V~~lafsp~-~~~lLatgs~Dg~V~lWdl~~~------~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl 88 (818)
...|..+.. .+ +..+++..+.+|.++-..+..- .....+. ..+.+..+........|+..+..|.+..+..
T Consensus 67 ~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 456666644 32 4568999999999999887442 1122233 2345666666556667888899999888875
Q ss_pred CC---------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-------CeEEEEEecCCCCeEEEEEc
Q 003459 89 EE---------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-------KGCIHTYKGHTRGVNAIRFT 152 (818)
Q Consensus 89 ~t---------~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-------~~~i~~l~~h~~~V~~l~fs 152 (818)
.. |...-.+. ....|..+...+++.+++..+..|.++...+.. ++-+..+ ...+.+..+...
T Consensus 145 ~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~ 222 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPI 222 (276)
T ss_dssp GGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEE
T ss_pred hhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEe
Confidence 32 22211222 234566666556677899999999999887642 2222233 223444444333
Q ss_pred CCCCEEEEEECCCeEEE--EECC
Q 003459 153 PDGRWVVSGGEDNTVKL--WDLT 173 (818)
Q Consensus 153 pdg~~L~sgs~Dg~I~I--wDl~ 173 (818)
.+...++..+.+|.+.. ++..
T Consensus 223 ~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 223 KEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp SSEEEEEEEETTSCEEEEEEEGG
T ss_pred CCCCEEEEEcCCCeEEEeeeCHH
Confidence 33345666667777666 6543
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=63.87 E-value=1.5e+02 Score=36.18 Aligned_cols=38 Identities=24% Similarity=0.204 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEc
Q 003459 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLT 98 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~ 98 (818)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 56778888888999999999999999999999988764
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=62.47 E-value=1.5e+02 Score=30.77 Aligned_cols=185 Identities=10% Similarity=0.008 Sum_probs=105.3
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceE---------EEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---C-----
Q 003459 28 SSRVLVTGGEDHKVNLWAIGKPNAI---------LSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE---E----- 90 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~~~~~i---------~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~---t----- 90 (818)
+..++++.+.+|.|+--.+..-+.. ..+.. .+.+..+........|+..+..|.++-+... .
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 3457888899999987766432211 11222 2344444444455566677788887666542 1
Q ss_pred -CeEEE---EEcCCCCCeEEEEEe---CCCCEEEEEECCCcEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCC
Q 003459 91 -AKIVR---TLTGHRSNCISVDFH---PFGEFFASGSLDTNLKIWDIRK-------KGCIHTYKGHTRGVNAIRFTPDGR 156 (818)
Q Consensus 91 -~~~v~---~l~~h~~~V~sv~fs---pdg~~Lasgs~Dg~I~IwDl~~-------~~~i~~l~~h~~~V~~l~fspdg~ 156 (818)
|..+. .+. ....|..+... .++.+++..+.+|.++-..+.. +.....+..+ +.+..+....+..
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 22211 122 23445555442 3456899999999999987642 1122223333 5555555555556
Q ss_pred EEEEEECCCeEEEEECCC---------CeEEEEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 003459 157 WVVSGGEDNTVKLWDLTA---------GKLLHDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~t---------~~~i~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t 216 (818)
.++..+.+|.+..++... |.....+. ....|.++....++..|++.+..|.++-.++..
T Consensus 159 ~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 159 EVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGG
T ss_pred EEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHH
Confidence 788888999988887642 11111222 234566665555566788889999998887743
No 366
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=61.93 E-value=1.5e+02 Score=30.70 Aligned_cols=185 Identities=12% Similarity=0.002 Sum_probs=103.9
Q ss_pred CcEEEEEeCCCeEEEEECC---------CCceEE---EecCCCCCeEEEEEc---CCCCEEEEEECCCeEEEEECCC---
Q 003459 29 SRVLVTGGEDHKVNLWAIG---------KPNAIL---SLSGHTSGIDSVSFD---SSEVLVAAGAASGTIKLWDLEE--- 90 (818)
Q Consensus 29 ~~lLatgs~Dg~V~lWdl~---------~~~~i~---~l~~h~~~V~~l~fs---pdg~~Lasgs~DG~I~IWDl~t--- 90 (818)
...|+..+..|.++-+... .|..+. .+. ....|.++..- .++.+++..+.+|.++...+..
T Consensus 53 ~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~ 131 (307)
T 1zi0_A 53 HDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNR 131 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCCCCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTT
T ss_pred CCEEEEEECCCEEEEEEhhHCcCCCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhc
Confidence 3345566667776665441 122211 122 23456655432 3566788899999999987642
Q ss_pred ----CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC---------CeEEEEEecCCCCeEEEEEcCCCCE
Q 003459 91 ----AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---------KGCIHTYKGHTRGVNAIRFTPDGRW 157 (818)
Q Consensus 91 ----~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~---------~~~i~~l~~h~~~V~~l~fspdg~~ 157 (818)
|.....+..+ +.+..+........++..+.+|.+..++... |.....+. ....|.++....++..
T Consensus 132 ~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ 209 (307)
T 1zi0_A 132 LRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGA 209 (307)
T ss_dssp CCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCE
T ss_pred cccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCE
Confidence 2222223333 5555555555566788888999888887632 11111222 2345666665555667
Q ss_pred EEEEECCCeEEEEECCC-------CeEE--EEEecCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Q 003459 158 VVSGGEDNTVKLWDLTA-------GKLL--HDFKCHEGQIQCIDFHPHEFLLATGSADRTVKFWDLET 216 (818)
Q Consensus 158 L~sgs~Dg~I~IwDl~t-------~~~i--~~~~~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~t 216 (818)
+++.+..|.++-.++.. ++-+ ..+....+.+-.+....+..-++..+.+|.+.-+++..
T Consensus 210 ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 210 ILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp EEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 88889999998887632 1112 12222234554444433444455666677766666554
No 367
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=60.93 E-value=1.6e+02 Score=30.62 Aligned_cols=185 Identities=10% Similarity=0.037 Sum_probs=106.6
Q ss_pred CCCCEEEEEECCCeEEEEECCCCeE-------EE--EEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC---Ce--
Q 003459 69 SSEVLVAAGAASGTIKLWDLEEAKI-------VR--TLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK---KG-- 134 (818)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t~~~-------v~--~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~---~~-- 134 (818)
++..++++.+.+|.|+--.+...+. +. .+.. .+.+..+........++..+..|.++-+.... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 4666788899999999887653321 11 1222 23455555555667788888899877766532 11
Q ss_pred ----E---EEEEecCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC-------CeEEEEEecCCCCEEEEEEeCCC
Q 003459 135 ----C---IHTYKGHTRGVNAIRFTP---DGRWVVSGGEDNTVKLWDLTA-------GKLLHDFKCHEGQIQCIDFHPHE 197 (818)
Q Consensus 135 ----~---i~~l~~h~~~V~~l~fsp---dg~~L~sgs~Dg~I~IwDl~t-------~~~i~~~~~h~~~I~sv~fspdg 197 (818)
. ...+. ....|..+...+ ++.+|+..+..|.++...+.. |.....+.. ...+..+.....+
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~ 162 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKD 162 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTT
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCC
Confidence 0 00122 123455554332 467888999999999888742 322223332 4556666665556
Q ss_pred CEEEEEeCCCeEEEEECCCC---------eEEEEeCCCCCCeeEEEEeCCCCEEEEEECC-CEEEEEecC
Q 003459 198 FLLATGSADRTVKFWDLETF---------ELIGSAGPETSGVRCLTFNPDGRTLLCGLHE-SLKVFSWEP 257 (818)
Q Consensus 198 ~~Lasgs~Dg~I~IwDl~t~---------~~i~~~~~~~~~I~sl~fspdg~~Lasgs~d-~I~Vwd~~~ 257 (818)
..++..+.+|.+..+..... .....+. ....|..+..-.++..+++.+.+ ..+.+.++.
T Consensus 163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 67888889999998887542 1222222 23456666555555555555554 466666653
No 368
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=59.31 E-value=1.9e+02 Score=30.97 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=87.1
Q ss_pred CCcEEEEEeCCCeEEEEECC---------CCceEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---------
Q 003459 28 SSRVLVTGGEDHKVNLWAIG---------KPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE--------- 89 (818)
Q Consensus 28 ~~~lLatgs~Dg~V~lWdl~---------~~~~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~--------- 89 (818)
+..++++.+.+|.|+--.+. .+..-..++ ..+.+..+........|+..+..|.++-+...
T Consensus 6 ~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~a 84 (370)
T 3l6v_A 6 PEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSNA 84 (370)
T ss_dssp CCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred CCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCccc
Confidence 45688999999999876542 123333444 35566666666666677777888887766532
Q ss_pred CCeEEEE---EcCCCCCeEEEEEeC---CCCEEEEEECCCcEEEEECCC-------CeEEEEEecCCCCeEEEEEcCCCC
Q 003459 90 EAKIVRT---LTGHRSNCISVDFHP---FGEFFASGSLDTNLKIWDIRK-------KGCIHTYKGHTRGVNAIRFTPDGR 156 (818)
Q Consensus 90 t~~~v~~---l~~h~~~V~sv~fsp---dg~~Lasgs~Dg~I~IwDl~~-------~~~i~~l~~h~~~V~~l~fspdg~ 156 (818)
.|..+.. +. ....|.++.... .+.+|+.++..|.++...+.. +.....++. ...+..+.......
T Consensus 85 ~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~~~ 162 (370)
T 3l6v_A 85 RGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDGDR 162 (370)
T ss_dssp CCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECSCC
T ss_pred CCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCCCc
Confidence 1222111 22 234555554432 356899999999999887642 211222332 34455555555566
Q ss_pred EEEEEECCCeEEEEECC
Q 003459 157 WVVSGGEDNTVKLWDLT 173 (818)
Q Consensus 157 ~L~sgs~Dg~I~IwDl~ 173 (818)
.++..+..|.+..++..
T Consensus 163 ~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 163 DVLLFASNGKTVRFGES 179 (370)
T ss_dssp EEEEEETTSEEEEEEGG
T ss_pred eEEEEeCCCeEEEEEcc
Confidence 78888899988888753
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.49 E-value=3e+02 Score=34.17 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=31.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 003459 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182 (818)
Q Consensus 146 V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~ 182 (818)
+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 4456667788899999999999999999999988865
No 370
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=56.83 E-value=2e+02 Score=30.53 Aligned_cols=182 Identities=11% Similarity=0.006 Sum_probs=91.5
Q ss_pred cEEEEEeCCCeEEEEECCC-C-------ceEEE---ecC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC------
Q 003459 30 RVLVTGGEDHKVNLWAIGK-P-------NAILS---LSG-HTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEA------ 91 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~-~-------~~i~~---l~~-h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~------ 91 (818)
+.++.-..||+|+.|=... + ..... +.. ....|..++. .....+.-..||.|+.|-....
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 3455566778888885432 1 11111 110 0123444443 3445555678999999964321
Q ss_pred -----eEEEEEcC-CCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-----------eEEEEEec-CCCCeEEEEEcC
Q 003459 92 -----KIVRTLTG-HRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-----------GCIHTYKG-HTRGVNAIRFTP 153 (818)
Q Consensus 92 -----~~v~~l~~-h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-----------~~i~~l~~-h~~~V~~l~fsp 153 (818)
.....+.. ....+..++...-..+.+.-..||.|+.|-.... .....+.. ....|..++..
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G- 167 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG- 167 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC-
T ss_pred CcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC-
Confidence 11122221 2234555666666677788889999999964321 11111221 12256666654
Q ss_pred CCCEEEEEECCCeEEEEECCCC---------e--EEEEEec-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 003459 154 DGRWVVSGGEDNTVKLWDLTAG---------K--LLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (818)
Q Consensus 154 dg~~L~sgs~Dg~I~IwDl~t~---------~--~i~~~~~-h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (818)
..+.++...+|.|+.|-.... . ....+.. ....|..++........++-..||.|+.|-..
T Consensus 168 -~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n 240 (389)
T 3kci_A 168 -GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDG 240 (389)
T ss_dssp -SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECC
T ss_pred -cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCC
Confidence 445666678999999975321 0 1111111 23456677665433566666789999999643
No 371
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=55.38 E-value=2e+02 Score=30.06 Aligned_cols=186 Identities=9% Similarity=0.002 Sum_probs=103.4
Q ss_pred CCCCEEEEEECCCeEEEEECCCC----eEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC---C------CeE
Q 003459 69 SSEVLVAAGAASGTIKLWDLEEA----KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---K------KGC 135 (818)
Q Consensus 69 pdg~~Lasgs~DG~I~IWDl~t~----~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~---~------~~~ 135 (818)
++..++++.+.+|.|+--.+... .....+.. .+.+..+........|+..+..|.++-+... . |.+
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~ 81 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKD-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH 81 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCT-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence 56677888899999987765421 11111232 2344455555566778888888987766542 1 222
Q ss_pred EEE---EecCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECC--------CCeEEEEEecCCCCEEEEEEeCCCCEEE
Q 003459 136 IHT---YKGHTRGVNAIRFTP---DGRWVVSGGEDNTVKLWDLT--------AGKLLHDFKCHEGQIQCIDFHPHEFLLA 201 (818)
Q Consensus 136 i~~---l~~h~~~V~~l~fsp---dg~~L~sgs~Dg~I~IwDl~--------t~~~i~~~~~h~~~I~sv~fspdg~~La 201 (818)
+.. +. ....|..+...+ ++.+++.++..|.++...+. .|.....+.. ...+..+........|+
T Consensus 82 i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 82 IANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELF 159 (323)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEE
T ss_pred hhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEE
Confidence 111 22 233455543333 26689999999999998774 2222223332 24555555555566788
Q ss_pred EEeCCCeEEEEECCCCeE-------EEEeCC-CCCCeeEEEEeCCCC-EEEEEECCC-EEEEEecC
Q 003459 202 TGSADRTVKFWDLETFEL-------IGSAGP-ETSGVRCLTFNPDGR-TLLCGLHES-LKVFSWEP 257 (818)
Q Consensus 202 sgs~Dg~I~IwDl~t~~~-------i~~~~~-~~~~I~sl~fspdg~-~Lasgs~d~-I~Vwd~~~ 257 (818)
..+.+|.+..++...-.. +.-+.. ....|.++..-+++. .|++.+.++ .+..+++.
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 888899988887653211 111211 234466665444444 555555543 55555543
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=50.36 E-value=1.7e+02 Score=33.67 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=43.8
Q ss_pred CeEEEEEcCCCCEEEEEECC------------CeEEEEECCCCeEEEEEcCC-CCCeEEEEEeCCCCEEEEE
Q 003459 61 GIDSVSFDSSEVLVAAGAAS------------GTIKLWDLEEAKIVRTLTGH-RSNCISVDFHPFGEFFASG 119 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~D------------G~I~IWDl~t~~~v~~l~~h-~~~V~sv~fspdg~~Lasg 119 (818)
..-.|+|++.|.++++-..+ ..+.+.+..+++..+.+.+. ..+++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35779999999977665432 24566677788877777654 4689999999999877665
No 373
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=48.70 E-value=1.9e+02 Score=33.17 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=44.4
Q ss_pred CCeEEEEEcCCCCEEEEEEC------------CCeEEEEECCCCeEEEEEcCC-CCCeEEEEEeCCCCEEEEEE
Q 003459 60 SGIDSVSFDSSEVLVAAGAA------------SGTIKLWDLEEAKIVRTLTGH-RSNCISVDFHPFGEFFASGS 120 (818)
Q Consensus 60 ~~V~~l~fspdg~~Lasgs~------------DG~I~IWDl~t~~~v~~l~~h-~~~V~sv~fspdg~~Lasgs 120 (818)
.....|.|.++|.+.++... .+.|..++..++++...+.+. ...++.++|+||++.|+++-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34678999999987774432 125777777788877766543 45789999999999877663
No 374
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.69 E-value=4.4e+02 Score=31.96 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEe
Q 003459 145 GVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFK 182 (818)
Q Consensus 145 ~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~ 182 (818)
.+.+++..++..++++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46778888888999999999999999999999988765
No 375
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.05 E-value=1.8e+02 Score=36.24 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=30.8
Q ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 003459 188 IQCIDFHPHEFLLATGSADRTVKFWDLETFELIGSA 223 (818)
Q Consensus 188 I~sv~fspdg~~Lasgs~Dg~I~IwDl~t~~~i~~~ 223 (818)
+.+++..++..++++-+.|+++++|++.+++++.+.
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 445566778889999999999999999999998774
No 376
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=42.04 E-value=3.5e+02 Score=28.89 Aligned_cols=145 Identities=11% Similarity=0.035 Sum_probs=89.8
Q ss_pred cCCCCEEEEEECCCeEEEEECCC---------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEEC---CC---
Q 003459 68 DSSEVLVAAGAASGTIKLWDLEE---------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDI---RK--- 132 (818)
Q Consensus 68 spdg~~Lasgs~DG~I~IWDl~t---------~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl---~~--- 132 (818)
-++..++++.+.+|.|+--.+.. +..-..++ ....+..+........|+..+..|.++-+.. ..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r 82 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGS 82 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCc
Confidence 46778899999999999865422 22333344 3455666666666778888888898776653 21
Q ss_pred ---CeEEEE---EecCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCC-------CeEEEEEecCCCCEEEEEEeCC
Q 003459 133 ---KGCIHT---YKGHTRGVNAIRFTP---DGRWVVSGGEDNTVKLWDLTA-------GKLLHDFKCHEGQIQCIDFHPH 196 (818)
Q Consensus 133 ---~~~i~~---l~~h~~~V~~l~fsp---dg~~L~sgs~Dg~I~IwDl~t-------~~~i~~~~~h~~~I~sv~fspd 196 (818)
|..+.. +. ....|.++.... ++.+|+.++..|.++...+.. |.....++. ...+..+.....
T Consensus 83 ~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 83 NARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred ccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 222111 22 234565554432 456899999999999987642 222223332 344555555555
Q ss_pred CCEEEEEeCCCeEEEEECC
Q 003459 197 EFLLATGSADRTVKFWDLE 215 (818)
Q Consensus 197 g~~Lasgs~Dg~I~IwDl~ 215 (818)
...|+..+.+|.+..|+..
T Consensus 161 ~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp CCEEEEEETTSEEEEEEGG
T ss_pred CceEEEEeCCCeEEEEEcc
Confidence 5677788888988888764
No 377
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=41.18 E-value=33 Score=32.48 Aligned_cols=65 Identities=12% Similarity=0.116 Sum_probs=52.4
Q ss_pred hcCCceeehhhHHhhhcccceeeehhhhhhhhhHHhhhccccchhHHHHHHHHHHHHHHhhhhHHhhhcC
Q 003459 694 KMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISA 763 (818)
Q Consensus 694 ~~~d~~v~~d~l~~~~~~~~~~~l~~c~~~lp~~~~ll~s~~e~~~~~~~~~l~~~~~~f~~~i~~~~~~ 763 (818)
.-+|++...|+-..++.++ +-.-..+-.|.+-|+++...-.--||..|-.++||.|+.++.-+..
T Consensus 29 ~~~Dw~~~leicD~I~~~~-----~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas 93 (163)
T 1x5b_A 29 TTEDWSLIMDICDKVGSTP-----NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCS 93 (163)
T ss_dssp SSCCHHHHHHHHHHHHHSS-----SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHhCCC-----ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhh
Confidence 3678888888888888764 3466677788888999988777789999999999999988866643
No 378
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.53 E-value=46 Score=31.76 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=59.1
Q ss_pred hhcCCHHHHHHHHHh----cCCceeehhhHHhhhcccceeeehhhhhhhhhHHhhhccccchhHHHHHHHHHHHHHHhhh
Q 003459 680 WERNDVKGAISAMQK----MADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGS 755 (818)
Q Consensus 680 w~~~~~~~~~~~~~~----~~d~~v~~d~l~~~~~~~~~~~l~~c~~~lp~~~~ll~s~~e~~~~~~~~~l~~~~~~f~~ 755 (818)
|....+...|+.|.. -+|++...|+-..++.++. -.-..+-.|.+-|+++-..-.--||..|-.++||+|+
T Consensus 9 ~~~s~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~-----~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~ 83 (171)
T 1juq_A 9 AEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELE-----GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGR 83 (171)
T ss_dssp ---CCHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH
T ss_pred CCCCcHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCc-----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 444455555655544 6788888888888887753 3556667788889999887788899999999999999
Q ss_pred hHHhhhcC
Q 003459 756 MIYSAISA 763 (818)
Q Consensus 756 ~i~~~~~~ 763 (818)
.++.-+..
T Consensus 84 ~Fh~evas 91 (171)
T 1juq_A 84 RFHNEVGK 91 (171)
T ss_dssp HHHHHHTS
T ss_pred HHHHHHhh
Confidence 99876644
No 379
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=36.54 E-value=1.2e+02 Score=35.62 Aligned_cols=36 Identities=25% Similarity=0.578 Sum_probs=29.8
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEec
Q 003459 146 VNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC 183 (818)
Q Consensus 146 V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~~~i~~~~~ 183 (818)
|.++.+ +..++++-+.|..+|+||+.+++++.+...
T Consensus 224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 554444 467999999999999999999998888764
No 380
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=36.34 E-value=5.8e+02 Score=29.78 Aligned_cols=192 Identities=12% Similarity=0.072 Sum_probs=100.5
Q ss_pred eEEEE-EcCCCCEEEEEEC-----CCeEEEEECCCCeEEEE-Ec-CCCC------CeEEEEEeCCCCEEEEEEC------
Q 003459 62 IDSVS-FDSSEVLVAAGAA-----SGTIKLWDLEEAKIVRT-LT-GHRS------NCISVDFHPFGEFFASGSL------ 121 (818)
Q Consensus 62 V~~l~-fspdg~~Lasgs~-----DG~I~IWDl~t~~~v~~-l~-~h~~------~V~sv~fspdg~~Lasgs~------ 121 (818)
...+. ++|++++++.+-. -..|+++|+.+++.+.. |. .-+. ....++|. +++.++.+..
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~-d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWI-NKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEE-ETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEE-CCCEEEEEeCCCCCCc
Confidence 44455 7899987766422 24799999999987631 11 0000 01344887 4444444321
Q ss_pred -----CCcEEEEECCCCe--EEEEEecCCCCe-EEEEEcCCCCE-----EEEEECC---CeEEEEECCC--CeEEEEEec
Q 003459 122 -----DTNLKIWDIRKKG--CIHTYKGHTRGV-NAIRFTPDGRW-----VVSGGED---NTVKLWDLTA--GKLLHDFKC 183 (818)
Q Consensus 122 -----Dg~I~IwDl~~~~--~i~~l~~h~~~V-~~l~fspdg~~-----L~sgs~D---g~I~IwDl~t--~~~i~~~~~ 183 (818)
...|+.|.+-+.. -...+.+....+ .....+.++++ +++.+.+ ..+++.|... ++. ..+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKL-QKINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEE-EECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcc-eEeec
Confidence 2468888876542 233344333332 34455666662 4443322 4567777653 432 22322
Q ss_pred CCCCEEEEEEeCCCCEEEEE----------eCCCeEEEEECCCCe--------EEEEeC-CCCCCeeEEEEeCCCCEEEE
Q 003459 184 HEGQIQCIDFHPHEFLLATG----------SADRTVKFWDLETFE--------LIGSAG-PETSGVRCLTFNPDGRTLLC 244 (818)
Q Consensus 184 h~~~I~sv~fspdg~~Lasg----------s~Dg~I~IwDl~t~~--------~i~~~~-~~~~~I~sl~fspdg~~Las 244 (818)
.... .+..+.++.+++.. ...+.|..+|+.++. ....+. .....+..+.|..+ .++++
T Consensus 289 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCcc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 2221 12344566555533 246778999987631 111122 23445778888876 45555
Q ss_pred EECCC---EEEEEecCC
Q 003459 245 GLHES---LKVFSWEPI 258 (818)
Q Consensus 245 gs~d~---I~Vwd~~~~ 258 (818)
...++ +.++++..+
T Consensus 366 ~~~~~~~~l~~~~~~~g 382 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENE 382 (711)
T ss_dssp EEETTEEEEEEECEETT
T ss_pred EEECCEEEEEEEECCCC
Confidence 55553 666666554
No 381
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=33.17 E-value=4.4e+02 Score=27.44 Aligned_cols=196 Identities=8% Similarity=-0.008 Sum_probs=105.3
Q ss_pred CEEEEEEeeCCCcEEEEEeCCCeEEEEECC---------CCceEE---EecCCCCCeEEE-EEcC--CCCEEEEEECCCe
Q 003459 18 TVNCLKIGRKSSRVLVTGGEDHKVNLWAIG---------KPNAIL---SLSGHTSGIDSV-SFDS--SEVLVAAGAASGT 82 (818)
Q Consensus 18 ~V~~lafsp~~~~lLatgs~Dg~V~lWdl~---------~~~~i~---~l~~h~~~V~~l-~fsp--dg~~Lasgs~DG~ 82 (818)
.+..+.... +...|+..+..|.++-+... .|..+. .+. ....|.++ .... ++.+++.++.+|.
T Consensus 40 ~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~ 117 (323)
T 1wp5_A 40 RLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGM 117 (323)
T ss_dssp CEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSE
T ss_pred EEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCe
Confidence 344444443 34456666677877666541 122111 122 23445554 3332 3567889999999
Q ss_pred EEEEECCC--------CeEEEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC-------eEEEEEec-CCCCe
Q 003459 83 IKLWDLEE--------AKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK-------GCIHTYKG-HTRGV 146 (818)
Q Consensus 83 I~IWDl~t--------~~~v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~-------~~i~~l~~-h~~~V 146 (818)
++...+.. |.....+.. .+.+..+........++..+.+|.+..+....- .-+.-+.- ....|
T Consensus 118 iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~V 196 (323)
T 1wp5_A 118 VKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYI 196 (323)
T ss_dssp EEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCE
T ss_pred EEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEE
Confidence 99988742 222222332 255555555555667888889999888876421 11221211 23456
Q ss_pred EEEEEcCCCC-EEEEEECCCeEEEEECCC-------CeEEEEEe---cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Q 003459 147 NAIRFTPDGR-WVVSGGEDNTVKLWDLTA-------GKLLHDFK---CHEGQIQCIDFHPHEFLLATGSADRTVKFWDLE 215 (818)
Q Consensus 147 ~~l~fspdg~-~L~sgs~Dg~I~IwDl~t-------~~~i~~~~---~h~~~I~sv~fspdg~~Lasgs~Dg~I~IwDl~ 215 (818)
.++...+++. .|++.+..|..+..++.. ++-+..++ .....+..+....++..++..+.+|.+.-+++.
T Consensus 197 v~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~ 276 (323)
T 1wp5_A 197 VSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG 276 (323)
T ss_dssp EEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred EEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhh
Confidence 6665544455 788888999988877643 22222222 112244433333333445555666666655554
Q ss_pred C
Q 003459 216 T 216 (818)
Q Consensus 216 t 216 (818)
.
T Consensus 277 ~ 277 (323)
T 1wp5_A 277 D 277 (323)
T ss_dssp G
T ss_pred h
Confidence 3
No 382
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=32.59 E-value=28 Score=32.08 Aligned_cols=68 Identities=13% Similarity=0.077 Sum_probs=55.0
Q ss_pred HHHhcCCceeehhhHHhhhcccceeeehhhhhhhhhHHhhhccccchhHHHHHHHHHHHHHHhhhhHHhhhcC
Q 003459 691 AMQKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISA 763 (818)
Q Consensus 691 ~~~~~~d~~v~~d~l~~~~~~~~~~~l~~c~~~lp~~~~ll~s~~e~~~~~~~~~l~~~~~~f~~~i~~~~~~ 763 (818)
....-+|++...|+-..++.++. -.-..+-.|.+-|+++...-..-||..|-.+++|.|+-++..++.
T Consensus 16 ~~l~~~dw~~ileicD~I~~~~~-----~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas 83 (140)
T 3ldz_A 16 EMNTAEDWGLILDICDKVGQSRT-----GPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS 83 (140)
T ss_dssp TTSSSCCHHHHHHHHHHHTTSTT-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS
T ss_pred CCCCCcCHHHHHHHHHHHHCCCc-----CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 33456888888888888887653 466777889999999988777889999999999999999877654
No 383
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=31.43 E-value=33 Score=31.93 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=55.3
Q ss_pred HHhcCCceeehhhHHhhhcccceeeehhhhhhhhhHHhhhccccchhHHHHHHHHHHHHHHhhhhHHhhhcC
Q 003459 692 MQKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISA 763 (818)
Q Consensus 692 ~~~~~d~~v~~d~l~~~~~~~~~~~l~~c~~~lp~~~~ll~s~~e~~~~~~~~~l~~~~~~f~~~i~~~~~~ 763 (818)
...-+|++...|+-..++.++ +-.-..+-.|.+-|+++-..-.--||..|-.++||.|+.++.-++.
T Consensus 13 ~l~~~dw~~~leicD~I~~~~-----~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas 79 (148)
T 1mhq_A 13 SMSEQDWSAIQNFCEQVNTDP-----NGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAK 79 (148)
T ss_dssp TCSSCCHHHHHHHHHHHHHSS-----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTS
T ss_pred CCCCcCHHHHHHHHHHHHcCC-----ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh
Confidence 334688888888888888775 3467777788899999998889999999999999999998877754
No 384
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=29.77 E-value=1.1e+02 Score=35.32 Aligned_cols=59 Identities=24% Similarity=0.265 Sum_probs=42.7
Q ss_pred EEEEEEeCCCCEEEEEeCC------------CeEEEEECCCCeEEEEeC-CCCCCeeEEEEeCCCCEEEEEE
Q 003459 188 IQCIDFHPHEFLLATGSAD------------RTVKFWDLETFELIGSAG-PETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 188 I~sv~fspdg~~Lasgs~D------------g~I~IwDl~t~~~i~~~~-~~~~~I~sl~fspdg~~Lasgs 246 (818)
.-.|+|+|.|.++++-..+ ..+.+.+..+++....+. +....++.++|+||++.|++..
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni 549 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence 4678999999876665432 346677777777655443 3456799999999999998763
No 385
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=28.87 E-value=1.5e+02 Score=33.90 Aligned_cols=60 Identities=20% Similarity=0.197 Sum_probs=43.7
Q ss_pred CEEEEEEeCCCCEEEEEeC------------CCeEEEEECCCCeEEEEeCC-CCCCeeEEEEeCCCCEEEEEE
Q 003459 187 QIQCIDFHPHEFLLATGSA------------DRTVKFWDLETFELIGSAGP-ETSGVRCLTFNPDGRTLLCGL 246 (818)
Q Consensus 187 ~I~sv~fspdg~~Lasgs~------------Dg~I~IwDl~t~~~i~~~~~-~~~~I~sl~fspdg~~Lasgs 246 (818)
....|.|.++|.+.++... ...|..++..+++....+.. ....++.++|+||++.|+++.
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4578999999987774321 22677788877876555543 345689999999999999874
No 386
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.89 E-value=42 Score=33.34 Aligned_cols=67 Identities=12% Similarity=0.091 Sum_probs=53.4
Q ss_pred HHhcCCceeehhhHHhhhcccceeeehhhhhhhhhHHhhhccccchhHHHHHHHHHHHHHHhhhhHHhhhcC
Q 003459 692 MQKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISA 763 (818)
Q Consensus 692 ~~~~~d~~v~~d~l~~~~~~~~~~~l~~c~~~lp~~~~ll~s~~e~~~~~~~~~l~~~~~~f~~~i~~~~~~ 763 (818)
....+|++...|+-..|+..+. -.-..+-.|.+-|+++-..-.--||..|-.+++|.|+.++.-+..
T Consensus 17 ~~~~~dw~~~leicd~i~~~~~-----~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~ 83 (220)
T 1dvp_A 17 LRLEPDWPSILLICDEINQKDV-----TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFT 83 (220)
T ss_dssp TCSSCCHHHHHHHHHHHHTTSS-----CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSS
T ss_pred CCCCcCHHHHHHHHHhhcCCCc-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHh
Confidence 3347888988888888887654 455666677888899888777889999999999999999876644
No 387
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=27.75 E-value=38 Score=27.61 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=37.6
Q ss_pred hhhhhhhhhHHhhhccccchhHHHHHHHH------------HHHHHHhhhhHHhhhcC
Q 003459 718 DICSCLLPLLTGLLESDMDRHLSISLDIL------------LKLVRTFGSMIYSAISA 763 (818)
Q Consensus 718 ~~c~~~lp~~~~ll~s~~e~~~~~~~~~l------------~~~~~~f~~~i~~~~~~ 763 (818)
++|-.++-.++++|..+.|.-+.-+|+-+ ..+|..|||.|-+.|.+
T Consensus 5 ~~C~~~v~~le~~l~n~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~ 62 (74)
T 1l9l_A 5 RTCLTIVQKLKKMVDKPTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVA 62 (74)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcccCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999667888888887653 45788899999888754
No 388
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=25.49 E-value=44 Score=31.17 Aligned_cols=65 Identities=14% Similarity=0.135 Sum_probs=53.8
Q ss_pred hcCCceeehhhHHhhhcccceeeehhhhhhhhhHHhhhccccchhHHHHHHHHHHHHHHhhhhHHhhhcC
Q 003459 694 KMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRHLSISLDILLKLVRTFGSMIYSAISA 763 (818)
Q Consensus 694 ~~~d~~v~~d~l~~~~~~~~~~~l~~c~~~lp~~~~ll~s~~e~~~~~~~~~l~~~~~~f~~~i~~~~~~ 763 (818)
.-+|++...|+-..++.++ +-.-..+-.|.+-|+++-..-..-||..|-.++||.|+.++.-++.
T Consensus 25 ~~~dw~~ileicD~I~~~~-----~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias 89 (149)
T 3g2s_A 25 KELDWASINGFCEQLNEDF-----EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK 89 (149)
T ss_dssp SSCCHHHHHHHHHHGGGSS-----SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS
T ss_pred CCcCHHHHHHHHHHHHCCC-----CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 4478888888888888765 2566777889999999888888899999999999999999887754
No 389
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=24.90 E-value=3.3e+02 Score=27.31 Aligned_cols=141 Identities=6% Similarity=-0.063 Sum_probs=78.2
Q ss_pred EEEEEECCCeEEEEECCCCeE-EEEEcCCCCCeEEEEEeCCCCEEEEEECCCcEEEEECC---C----CeEE---EEEec
Q 003459 73 LVAAGAASGTIKLWDLEEAKI-VRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR---K----KGCI---HTYKG 141 (818)
Q Consensus 73 ~Lasgs~DG~I~IWDl~t~~~-v~~l~~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~---~----~~~i---~~l~~ 141 (818)
.+++.+.+|.|+--....... ...+... +.+..+........|+..+..|.++-+... . |..+ ..+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 445567777776555432110 0012222 334444444445567777788876655432 1 2211 1122
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CeEEEEEecCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEE
Q 003459 142 HTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTA-------GKLLHDFKCHEGQIQCIDFH-PHEFLLATGSADRTVKFWD 213 (818)
Q Consensus 142 h~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t-------~~~i~~~~~h~~~I~sv~fs-pdg~~Lasgs~Dg~I~IwD 213 (818)
....|.++....++.+|+.++..|.++...+.. |.....++. ...+..+... ..+..|+..+.+|.+..++
T Consensus 82 ~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~ 160 (256)
T 1zvt_A 82 PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFP 160 (256)
T ss_dssp TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEE
Confidence 234566664434567788999999999987642 333333432 2344444444 3455778888899888888
Q ss_pred CCC
Q 003459 214 LET 216 (818)
Q Consensus 214 l~t 216 (818)
...
T Consensus 161 ~~e 163 (256)
T 1zvt_A 161 VSD 163 (256)
T ss_dssp GGG
T ss_pred HHH
Confidence 764
No 390
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=22.68 E-value=5.8e+02 Score=25.44 Aligned_cols=142 Identities=8% Similarity=-0.057 Sum_probs=76.5
Q ss_pred cEEEEEeCCCeEEEEECCCCc-eEEEecCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---C----CeEEE---EEc
Q 003459 30 RVLVTGGEDHKVNLWAIGKPN-AILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLE---E----AKIVR---TLT 98 (818)
Q Consensus 30 ~lLatgs~Dg~V~lWdl~~~~-~i~~l~~h~~~V~~l~fspdg~~Lasgs~DG~I~IWDl~---t----~~~v~---~l~ 98 (818)
..+++.+.+|.|+--...... ....+.. .+.+..+........|+..+..|.++-+... . |..+. .+.
T Consensus 3 ~v~v~lT~~G~iKr~~~~~~~~~~~~lke-~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~ 81 (256)
T 1zvt_A 3 PVTIVLSQMGWVRSAKGHDIDAPGLNYKA-GDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP 81 (256)
T ss_dssp EEEEEEETTSEEEEEESSCCCSTTSCCCT-TCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC
T ss_pred CEEEEEeCCCEEEEeeCCcCCceeccCCC-CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC
Confidence 345667777777665543211 0112232 2344444433334455566778887665432 2 22111 111
Q ss_pred CCCCCeEEEEEeCCCCEEEEEECCCcEEEEECCC-------CeEEEEEecCCCCeEEEEEc-CCCCEEEEEECCCeEEEE
Q 003459 99 GHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRK-------KGCIHTYKGHTRGVNAIRFT-PDGRWVVSGGEDNTVKLW 170 (818)
Q Consensus 99 ~h~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~-------~~~i~~l~~h~~~V~~l~fs-pdg~~L~sgs~Dg~I~Iw 170 (818)
....|..+....++.+|+.++..|.++...+.. +.....++. .+.+..+... .++..++..+.+|.+..+
T Consensus 82 -~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 82 -PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp -TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred -CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 234566664434567788999999999987632 222333332 2344444444 345577788888888777
Q ss_pred ECCC
Q 003459 171 DLTA 174 (818)
Q Consensus 171 Dl~t 174 (818)
+...
T Consensus 160 ~~~e 163 (256)
T 1zvt_A 160 PVSD 163 (256)
T ss_dssp EGGG
T ss_pred EHHH
Confidence 7643
No 391
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=22.31 E-value=49 Score=30.98 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=50.4
Q ss_pred HhcCCceeehhhHHhhhcccceeeehhhhhhhhhHHhhhccccchh-HHHHHHHHHHHHHHhhhhHHhhhcC
Q 003459 693 QKMADHTVLADVMSIVVEKIEIVTLDICSCLLPLLTGLLESDMDRH-LSISLDILLKLVRTFGSMIYSAISA 763 (818)
Q Consensus 693 ~~~~d~~v~~d~l~~~~~~~~~~~l~~c~~~lp~~~~ll~s~~e~~-~~~~~~~l~~~~~~f~~~i~~~~~~ 763 (818)
..-+|++...|+-..++.++. -.-..+-.|.+-|++....+ +..||..|-.++||.|+.++.-++.
T Consensus 29 l~~~Dw~~ileicD~In~~~~-----~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eias 95 (152)
T 3rru_A 29 VQTEDWGQFMHICDIINTTQD-----GPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVK 95 (152)
T ss_dssp CCSCCHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSS
T ss_pred CCCccHHHHHHHHHHHhCCCc-----cHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 445788888888888887653 56777788888887533333 4569999999999999999988865
No 392
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=22.08 E-value=9.1e+02 Score=27.45 Aligned_cols=230 Identities=14% Similarity=0.187 Sum_probs=121.0
Q ss_pred CCCCEEEEEEeeCCCcEEEEEeCCCe----------------------------EEEEECCCCceEEEecCC--CCC---
Q 003459 15 HSSTVNCLKIGRKSSRVLVTGGEDHK----------------------------VNLWAIGKPNAILSLSGH--TSG--- 61 (818)
Q Consensus 15 H~~~V~~lafsp~~~~lLatgs~Dg~----------------------------V~lWdl~~~~~i~~l~~h--~~~--- 61 (818)
|-..+....|.-|+..-++....+|+ |.+++=.+++.+..+.-. ...
T Consensus 177 ~yt~~~V~DlDGDGkaEIvv~TadGt~dg~g~~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg~~~~ 256 (591)
T 2zux_A 177 HYTQFMVYDLDGDGKAEVAMKTADGTKDGTGKVIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARGNVSD 256 (591)
T ss_dssp TSCCCEEECSSSSSSCEEEEEECTTCBCTTSCBCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCCCGGG
T ss_pred ccCceeEEEcCCCCcceEEEEccCCcccCCceEecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCCcccc
Confidence 45566677777766666777766665 667776667666654321 111
Q ss_pred ------------eEEEEEc-CCCCEEEEEE---CCCeEEEEECCCCeEEEE--EcCCC-----------CCeEEEEEeCC
Q 003459 62 ------------IDSVSFD-SSEVLVAAGA---ASGTIKLWDLEEAKIVRT--LTGHR-----------SNCISVDFHPF 112 (818)
Q Consensus 62 ------------V~~l~fs-pdg~~Lasgs---~DG~I~IWDl~t~~~v~~--l~~h~-----------~~V~sv~fspd 112 (818)
..++++- -+...++.+- .-..|..||+..++.... +.... ..+.-..+.-|
T Consensus 257 WGD~ygnR~drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgD 336 (591)
T 2zux_A 257 WGDSYGNRVDRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGD 336 (591)
T ss_dssp GTCSSSSGGGCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSS
T ss_pred cccccccccccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCC
Confidence 1233331 1112233321 123588899888875433 32211 12333334444
Q ss_pred CC-EEEEEECCCcEEEEECCCCeEEEEE-ecCCCCeEEEEEcCC--CCEEEEEECCC----eEEEEECCCCeEEEEEec-
Q 003459 113 GE-FFASGSLDTNLKIWDIRKKGCIHTY-KGHTRGVNAIRFTPD--GRWVVSGGEDN----TVKLWDLTAGKLLHDFKC- 183 (818)
Q Consensus 113 g~-~Lasgs~Dg~I~IwDl~~~~~i~~l-~~h~~~V~~l~fspd--g~~L~sgs~Dg----~I~IwDl~t~~~i~~~~~- 183 (818)
|+ -|+.|+. ++| ..++.+... .+|...+..-.|.|+ |..++.+.+++ -..+.|.++|+.+.....
T Consensus 337 G~dEIv~Gs~-----~iD-~dG~~L~st~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~ 410 (591)
T 2zux_A 337 GKDEIIFGSM-----AVD-HDGKGMYSTGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAG 410 (591)
T ss_dssp SSCEEEETTE-----EEC-TTSCEEEECSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCS
T ss_pred CCceEEEeee-----EEC-CCCCEeeeCCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCC
Confidence 54 3443321 222 223333332 278888888889886 45677776652 355689999999988764
Q ss_pred -CCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCeEEEEeCCCCCCeeEEEEeCCC-CEEEEEECCCEEEEEecCCc
Q 003459 184 -HEGQIQCIDFHPH--EFLLATGSADRTVKFWDLETFELIGSAGPETSGVRCLTFNPDG-RTLLCGLHESLKVFSWEPIR 259 (818)
Q Consensus 184 -h~~~I~sv~fspd--g~~Lasgs~Dg~I~IwDl~t~~~i~~~~~~~~~I~sl~fspdg-~~Lasgs~d~I~Vwd~~~~~ 259 (818)
+.+......|.|+ |.-+.+ ++ .+|+.. ++.+....+ ...-..+-|..|. +.|+- ...|.-|++...+
T Consensus 411 ~d~Gr~~~~Didp~~pG~E~w~---~~--~l~~~~-G~~i~~~~p-~~~N~~i~WdGDl~relld--~~~i~k~~~~~~~ 481 (591)
T 2zux_A 411 KDVGRGMAADIDPRYPGQEVWA---NG--SLYSAK-GVKIGSGVP-SSTNFGIWWDGDLLREQLD--SNRIDKWDYQNGV 481 (591)
T ss_dssp SCCCCEEEECCCTTSSSCEEEE---TT--EEECTT-SCBCSSCCC-SCCSEEECCSSSSSCEEEE--TTEEEEEETTTTE
T ss_pred CCCCceeEEecCCCCCceEEEe---cC--ceECCC-CCEecCCCC-CCcceeEEECCCCcHhhhC--CceEEecccCCCc
Confidence 3455566667776 333333 22 467654 444433211 1122356777765 33332 2245566665554
No 393
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.98 E-value=1.2e+02 Score=35.75 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCeEEEEEcC
Q 003459 61 GIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTG 99 (818)
Q Consensus 61 ~V~~l~fspdg~~Lasgs~DG~I~IWDl~t~~~v~~l~~ 99 (818)
.|.++.+ +..++++-+.|.++++|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4665555 477999999999999999999998887664
No 394
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=21.69 E-value=7.1e+02 Score=26.09 Aligned_cols=190 Identities=15% Similarity=0.103 Sum_probs=103.7
Q ss_pred EEEEEEeeCCCcEEEEEeCCCeEEEEECCCC--------c---eEEEecC-CCCCeEEEEEcCCCCEEEEEECCCeEEEE
Q 003459 19 VNCLKIGRKSSRVLVTGGEDHKVNLWAIGKP--------N---AILSLSG-HTSGIDSVSFDSSEVLVAAGAASGTIKLW 86 (818)
Q Consensus 19 V~~lafsp~~~~lLatgs~Dg~V~lWdl~~~--------~---~i~~l~~-h~~~V~~l~fspdg~~Lasgs~DG~I~IW 86 (818)
|..++. +....+.-..||.|+.|-.... . ....+.. ....+..++++......+.-..||.|+.|
T Consensus 55 i~~i~~---G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIG---GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp EEEEEE---ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred eEEEEe---CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 444443 3345556678899999964321 1 1111221 22345566776666677777889999999
Q ss_pred ECCCC-----------eEEEEEcCC-CCCeEEEEEeCCCCEEEEEECCCcEEEEECCCC----------e-EEEEEec-C
Q 003459 87 DLEEA-----------KIVRTLTGH-RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKK----------G-CIHTYKG-H 142 (818)
Q Consensus 87 Dl~t~-----------~~v~~l~~h-~~~V~sv~fspdg~~Lasgs~Dg~I~IwDl~~~----------~-~i~~l~~-h 142 (818)
-.... .....+... ...|..++.. ..+.++...+|.|+.|-.... . ....+.. .
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 64321 111222221 2245555543 456677778999999965321 0 1111111 2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----------eEEEEEec-CCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003459 143 TRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAG-----------KLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVK 210 (818)
Q Consensus 143 ~~~V~~l~fspdg~~L~sgs~Dg~I~IwDl~t~-----------~~i~~~~~-h~~~I~sv~fspdg~~Lasgs~Dg~I~ 210 (818)
...|..++......+.++-..||.|+.|-.... .....+.. ....|..++.-.+ ..++-..||.|+
T Consensus 210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~--hs~alt~~G~v~ 287 (389)
T 3kci_A 210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ--FSVALTKSGAVY 287 (389)
T ss_dssp TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT--EEEEEETTSCEE
T ss_pred CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC--EEEEEeCCCeEE
Confidence 335667766543356667778999999965321 11111221 1224666655433 444446789999
Q ss_pred EEECC
Q 003459 211 FWDLE 215 (818)
Q Consensus 211 IwDl~ 215 (818)
.|=..
T Consensus 288 ~wG~n 292 (389)
T 3kci_A 288 TWGKG 292 (389)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99653
Done!