BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003460
(818 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54R62|UCKC_DICDI Uridine-cytidine kinase C OS=Dictyostelium discoideum GN=udkC PE=3
SV=1
Length = 449
Score = 230 bits (587), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/340 (37%), Positives = 211/340 (62%), Gaps = 10/340 (2%)
Query: 482 RDTVKLVPMPDSYDFDRGLLLSVQAIQALLE-NKGLPVIVGIGGPSGSGKTSLAHKMANI 540
R T+K P+ D+ FD+G L+V+AIQ++ + ++G ++VGI GPSG+GKTS+A K+ ++
Sbjct: 17 RYTIK--PLKDTLSFDKGFFLAVRAIQSIRKKSQGSVIVVGIAGPSGAGKTSIAQKIVSV 74
Query: 541 VGCEV-VSLESYF-KSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598
+ + +SL++Y S Q+ + YDD+ +D LL KNISD+ + + T +P++D R
Sbjct: 75 LPKSILISLDNYLDSSRQIIEENYDDYRLVDFELLKKNISDLISNKPTDLPLYDFTKSGR 134
Query: 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-- 656
+K ++ E V++ EG+YALH EIR LDL +++ GGVH LI R+ RD R G
Sbjct: 135 YAYKRVQPPE-SKVLLIEGIYALHEEIRHLLDLRVSISGGVHFDLIKRIFRDVHRTGQQP 193
Query: 657 FMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILK 716
S I TV+PM++ IEP L A +++ N F+P + +++LKS KQ D++
Sbjct: 194 HESLQQITDTVYPMYKAFIEPDLQLAEIQVVNKFNPFGGLLNPIYILKSVKQGVTVDMIH 253
Query: 717 -ILDPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFI 775
+L+ + + + D+YL +P T + D IRVR +G+++++ E ++EG FI
Sbjct: 254 SVLNKSTIQENTARYYDIYL-IPPNTTFANSSSCDWIRVRNADGQYSIMFSEEIKEGPFI 312
Query: 776 IQPKVDFDISISTVAGLLNLGYQAVAYIEASAFIYQDGKV 815
I P+VDF + ++ + GL++LGYQ VA I + I++DGK+
Sbjct: 313 ISPRVDFVVGVNMLGGLMSLGYQMVAIIHRKSTIFKDGKI 352
Score = 224 bits (572), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 131/379 (34%), Positives = 223/379 (58%), Gaps = 25/379 (6%)
Query: 40 SFDHGYYLLVKSIQELREK-KGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENY- 96
SFD G++L V++IQ +R+K +G ++ VGI GPSG+GKTS+A+K+ SV+ LIS++NY
Sbjct: 28 SFDKGFFLAVRAIQSIRKKSQGSVIVVGIAGPSGAGKTSIAQKIVSVLPKSILISLDNYL 87
Query: 97 ---RVGVDEG-NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGV 152
R ++E +D +DF+ L +N+ DL K T +P++D+ + R K ++ S V
Sbjct: 88 DSSRQIIEENYDDYRLVDFELLKKNISDLISNKPTDLPLYDFTKSGRYAYKRVQPPESKV 147
Query: 153 VIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-----SLDSLIDSIFPL 207
++++G YAL +R LLD+RV++ GGVHF LI ++ D+ + SL + D+++P+
Sbjct: 148 LLIEGIYALHEEIRHLLDLRVSISGGVHFDLIKRIFRDVHRTGQQPHESLQQITDTVYPM 207
Query: 208 FRKHIEPDLHHAQIRINNRF--VSSFREAIYKLKCRSEAPGACSI------SAFQGNEAQ 259
++ IEPDL A+I++ N+F IY LK + I S Q N A+
Sbjct: 208 YKAFIEPDLQLAEIQVVNKFNPFGGLLNPIYILKSVKQGVTVDMIHSVLNKSTIQENTAR 267
Query: 260 TDNFIEMYLRPPSAT-EEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR 318
+ ++YL PP+ T + DWI++R + +Y + ++ I + FII P+ +F VG
Sbjct: 268 ---YYDIYLIPPNTTFANSSSCDWIRVRNADGQYSIMFSEE-IKEGPFIISPRVDFVVGV 323
Query: 319 MTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALR 378
LGGL+ LGY +VA R ST G + +S++ ++ L +TF+ ++G + +V +
Sbjct: 324 NMLGGLMSLGYQMVAIIHRKSTIFKDGKIIISYDELEELGQTFVQIKGFDATSVQEAGKK 383
Query: 379 MGINGPWITKSYLEMVLEK 397
+G+ ++ KSY+E+ +K
Sbjct: 384 LGLENNYLQKSYIELYQDK 402
>sp|Q9GNF0|UCKD_DICDI Uridine-cytidine kinase D OS=Dictyostelium discoideum GN=udkD PE=2
SV=1
Length = 492
Score = 182 bits (462), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 128/411 (31%), Positives = 215/411 (52%), Gaps = 36/411 (8%)
Query: 32 LQSLPVHASFDHGYYLLVKSIQELREKK-GGIVTVGIGGPSGSGKTSLAEKLASVIGCTL 90
++ +P SFD G++ ++I+ L EK I+ +GI GP G+GKT+LA K+ S++ +
Sbjct: 79 IKQVPYQLSFDQGFFHACRAIEILTEKDPKRIICLGIAGPVGAGKTTLANKIGSLVNGVI 138
Query: 91 ISMENY-RVGVDEGNDLDS---IDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146
IS++++ ++ + N+ D IDFD ++ L +L E K +IP ++ S+ I
Sbjct: 139 ISLQDFVKLENVKDNNYDDPVLIDFDKVISTLNELKENKTVIIPKI---VNRKMESRSIS 195
Query: 147 GASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDI---GDSCSLDSL--- 200
++S V+I++G YAL AR+R LLDI VA+ GGVH LI + I G + S D L
Sbjct: 196 LSTSKVIILEGAYALSARIRPLLDISVAITGGVHLDLIKSIMRGIVTSGKNSSKDVLAQI 255
Query: 201 IDSIFPLFRKHIEPDLHHAQIRINNRF--VSSFREAIYKLKCRSEAPGAC---SISAFQG 255
+ +FP+F+ +EPDL A+I+I++ F +S E +Y K + + +S+
Sbjct: 256 TNVVFPMFKAFVEPDLDQAKIKIHSSFNPMSQVVEPVYVCKAKYDNNKQFFDQFLSSLNV 315
Query: 256 NEAQTDNFIEMYLRPPS----ATEEARINDWIKMRQS-----GIRYYLSIGDQRIVDKNF 306
+ NF +MYL PP +A +WI++R+S I +Y ++D
Sbjct: 316 VPVKK-NFSDMYLYPPKYGVDGISQADKRNWIRIRRSEHGQFNITFY-----NEMMDGAV 369
Query: 307 IIRPKAEFEVGRMTLGGLLDLGYSVVASYKRA-STYVVYGNLSVSFETIDTLDETFMVLR 365
RP FE+ TLGGLL LGY + A R + + ++ E I L++ F+ ++
Sbjct: 370 NTRPSLNFEISVKTLGGLLSLGYQIGAILNRTVEVWYDKNGVVITKEYIKELEKHFIQIK 429
Query: 366 GTNRKTVGAEALRMGINGPWITKSYLEMVLEK-KGVPRLNTPPLFPNTPTT 415
G +R+ V A ++ I G + +++L + +K K N L PN +
Sbjct: 430 GHSRREVLDSAEKLKITGNHVPQTFLYLYFKKLKKSKNPNYSKLKPNNTNS 480
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 174/331 (52%), Gaps = 13/331 (3%)
Query: 490 MPDSYDFDRGLLLSVQAIQALLENKGLPVI-VGIGGPSGSGKTSLAHKMANIVGCEVVSL 548
+P FD+G + +AI+ L E +I +GI GP G+GKT+LA+K+ ++V ++SL
Sbjct: 82 VPYQLSFDQGFFHACRAIEILTEKDPKRIICLGIAGPVGAGKTTLANKIGSLVNGVIISL 141
Query: 549 ESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP-IFDLETGARSGFKELEVS 607
+ + K E VKD YDD +D + +++++ + +P I + + +RS L S
Sbjct: 142 QDFVKLENVKDNNYDDPVLIDFDKVISTLNELKENKTVIIPKIVNRKMESRS--ISLSTS 199
Query: 608 EDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQN---DIM 664
+ VII EG YAL IR LD+ +A+ GGVH LI + R G S++ I
Sbjct: 200 K---VIILEGAYALSARIRPLLDISVAITGGVHLDLIKSIMRGIVTSGKNSSKDVLAQIT 256
Query: 665 MTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFC 724
VFPMF+ +EP L A +KI + F+P+ ++V K+ Q + L
Sbjct: 257 NVVFPMFKAFVEPDLDQAKIKIHSSFNPMSQVVEPVYVCKAKYDNNKQFFDQFLSSLNVV 316
Query: 725 SSAQNFIDMYLRLPGIPTNG--QLTESDCIRVRICE-GRFALLIREPLREGNFIIQPKVD 781
+NF DMYL P +G Q + + IR+R E G+F + + +G +P ++
Sbjct: 317 PVKKNFSDMYLYPPKYGVDGISQADKRNWIRIRRSEHGQFNITFYNEMMDGAVNTRPSLN 376
Query: 782 FDISISTVAGLLNLGYQAVAYIEASAFIYQD 812
F+IS+ T+ GLL+LGYQ A + + ++ D
Sbjct: 377 FEISVKTLGGLLSLGYQIGAILNRTVEVWYD 407
>sp|B5ZBE2|URK_UREU1 Uridine kinase OS=Ureaplasma urealyticum serovar 10 (strain ATCC
33699 / Western) GN=udk PE=3 SV=1
Length = 207
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 99/187 (52%), Gaps = 15/187 (8%)
Query: 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL----ESYFKSE------QVKDFKY 562
N P++V I G SGSGKT+ A+++ + S+ +SY+ S + + Y
Sbjct: 2 NAKSPILVLIAGASGSGKTTFANEIVARIPQNTTSVIICQDSYYISNSQLNKNERRLINY 61
Query: 563 DDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH 622
D SS + L+ + +SDI+ ++ KVPI+D +T R K +++S D VI+FEG+YA++
Sbjct: 62 DHPSSFEWDLMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDIS-DVDVIVFEGIYAIY 119
Query: 623 PE-IRKSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQ-NDIMMTVFPMFQQHIEPHL 679
+ I + DL + + LI R+ RD R F S TV PM+ Q +EP
Sbjct: 120 DDVINQIADLKVFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFVEPSK 179
Query: 680 VHAHLKI 686
+A++ +
Sbjct: 180 KNANVSV 186
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Query: 63 VTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRVGVDEGNDLD----------S 108
+ V I G SGSGKT+ A ++ + I +I ++Y + + N + S
Sbjct: 7 ILVLIAGASGSGKTTFANEIVARIPQNTTSVIICQDSYYISNSQLNKNERRLINYDHPSS 66
Query: 109 IDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRS 167
++D + + L D+ + K +P++DY+ + R+ K I + V++ +G YA+ D +
Sbjct: 67 FEWDLMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDISDVDVIVFEGIYAIYDDVINQ 125
Query: 168 LLDIRVAVVGGVHFSLISKVQYDIGD-SCSLDSLI----DSIFPLFRKHIEPDLHHAQIR 222
+ D++V + LI ++ D+ + + S +S+I ++ P++ + +EP +A +
Sbjct: 126 IADLKVFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFVEPSKKNANVS 185
Query: 223 I 223
+
Sbjct: 186 V 186
>sp|Q9PQF9|URK_UREPA Uridine kinase OS=Ureaplasma parvum serovar 3 (strain ATCC 700970)
GN=udk PE=3 SV=1
Length = 207
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 23/191 (12%)
Query: 513 NKGLPVIVGIGGPSGSGKTSLAHKM--------ANIVGCEVVSLESYFKS------EQVK 558
N P+++ I G SGSGKT+ A+++ ++V C+ +SY+ S ++ +
Sbjct: 2 NTKSPILILIAGASGSGKTTFANEIIARIPKNTTSVVICQ----DSYYISNSQLNKKERR 57
Query: 559 DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGV 618
YD SS + L+ + +SDI+ ++ KVPI+D +T R K +++S D VI+ EG+
Sbjct: 58 LINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDIS-DVDVIVLEGI 115
Query: 619 YALHPE-IRKSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQ-NDIMMTVFPMFQQHI 675
YA++ + I + DL I + LI R+ RD R F S TV PM+ Q +
Sbjct: 116 YAIYDDVINQIADLKIFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFV 175
Query: 676 EPHLVHAHLKI 686
EP +A++ +
Sbjct: 176 EPSKKNANVSV 186
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 92/181 (50%), Gaps = 21/181 (11%)
Query: 63 VTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRVGVDEGNDLD----------S 108
+ + I G SGSGKT+ A ++ + I +I ++Y + + N + S
Sbjct: 7 ILILIAGASGSGKTTFANEIIARIPKNTTSVVICQDSYYISNSQLNKKERRLINYDHPSS 66
Query: 109 IDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRS 167
+++ + + L D+ + K +P++DY+ + R+ K I + V++++G YA+ D +
Sbjct: 67 FEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDISDVDVIVLEGIYAIYDDVINQ 125
Query: 168 LLDIRVAVVGGVHFSLISKVQYDIGD-SCSLDSLI----DSIFPLFRKHIEPDLHHAQIR 222
+ D+++ + LI ++ D+ + + S +S+I ++ P++ + +EP +A +
Sbjct: 126 IADLKIFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFVEPSKKNANVS 185
Query: 223 I 223
+
Sbjct: 186 V 186
>sp|B1AIX1|URK_UREP2 Uridine kinase OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 /
27 / NCTC 11736) GN=udk PE=3 SV=1
Length = 207
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 101/191 (52%), Gaps = 23/191 (12%)
Query: 513 NKGLPVIVGIGGPSGSGKTSLAHKM--------ANIVGCEVVSLESYFKS------EQVK 558
N P+++ I G SGSGKT+ A+++ ++V C+ +SY+ S ++ +
Sbjct: 2 NTKSPILILIAGASGSGKTTFANEIIARIPKNTTSVVICQ----DSYYISNSQLNKKERR 57
Query: 559 DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGV 618
YD SS + L+ + +SDI+ ++ KVPI+D +T R K +++S D VI+ EG+
Sbjct: 58 LINYDHPSSFEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDIS-DVDVIVLEGI 115
Query: 619 YALHPE-IRKSLDLWIAVVGGVHSHLISRVQRD-KSRMGCFMSQ-NDIMMTVFPMFQQHI 675
YA++ + I + DL I + LI R+ RD R F S TV PM+ Q +
Sbjct: 116 YAIYDDVINQIADLKIFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFV 175
Query: 676 EPHLVHAHLKI 686
EP +A++ +
Sbjct: 176 EPSKKNANVSV 186
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 92/181 (50%), Gaps = 21/181 (11%)
Query: 63 VTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRVGVDEGNDLD----------S 108
+ + I G SGSGKT+ A ++ + I +I ++Y + + N + S
Sbjct: 7 ILILIAGASGSGKTTFANEIIARIPKNTTSVVICQDSYYISNSQLNKKERRLINYDHPSS 66
Query: 109 IDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRS 167
+++ + + L D+ + K +P++DY+ + R+ K I + V++++G YA+ D +
Sbjct: 67 FEWELMREQLSDIKKRKKIKVPIYDYKTEIRLD-KTIDISDVDVIVLEGIYAIYDDVINQ 125
Query: 168 LLDIRVAVVGGVHFSLISKVQYDIGD-SCSLDSLI----DSIFPLFRKHIEPDLHHAQIR 222
+ D+++ + LI ++ D+ + + S +S+I ++ P++ + +EP +A +
Sbjct: 126 IADLKIFIETPKDECLIRRILRDVNERNRSFESVITQWRSTVSPMYDQFVEPSKKNANVS 185
Query: 223 I 223
+
Sbjct: 186 V 186
>sp|Q9Z7H0|URK_CHLPN Uridine kinase OS=Chlamydia pneumoniae GN=udk PE=3 SV=1
Length = 222
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 33/215 (15%)
Query: 521 GIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKS------EQVKDFKYDDFSSLDLSL 572
GI G SG+GKT+L + I G V+ ++Y+K E+ + +D + D L
Sbjct: 10 GITGGSGAGKTTLTQNIKEIFGEDVSVICQDNYYKDRSHYTPEERANLIWDHPDAFDNDL 69
Query: 573 LSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDL 631
L +I ++N + P+FD G RS E+E VI+ EG+ + E+R +D+
Sbjct: 70 LISDIKRLKNNEIVQAPVFDFVLGNRSK-TEIETIYPSKVILVEGILVFENQELRDLMDI 128
Query: 632 WIAVVGGVHSHLISRVQRDKSRMG----CFMSQNDIMMTVFPMFQQHIEPH------LVH 681
I V ++ R+ RD G C MS+ + V PM ++ IEP +VH
Sbjct: 129 RIFVDTDADERILRRMVRDVQEQGDSVDCIMSR--YLSMVKPMHEKFIEPTRKYADIIVH 186
Query: 682 AHL-----------KIRNDFDPVLSPESSLFVLKS 705
+ KI+N + L + + +++ S
Sbjct: 187 GNYRQNVVTNILSQKIKNHLENALESDETYYMVNS 221
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 95/200 (47%), Gaps = 18/200 (9%)
Query: 66 GIGGPSGSGKTSLAEKLASVIG--CTLISMENY-----RVGVDEGNDL-----DSIDFDA 113
GI G SG+GKT+L + + + G ++I +NY +E +L D+ D D
Sbjct: 10 GITGGSGAGKTTLTQNIKEIFGEDVSVICQDNYYKDRSHYTPEERANLIWDHPDAFDNDL 69
Query: 114 LVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-LRSLLDIR 172
L+ +++ L + P+FD+ NR +++ S V++V+G + + LR L+DIR
Sbjct: 70 LISDIKRLKNNEIVQAPVFDFVLGNRSKTEIETIYPSKVILVEGILVFENQELRDLMDIR 129
Query: 173 VAVVGGVHFSLISKVQYDI---GDS--CSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRF 227
+ V ++ ++ D+ GDS C + + + P+ K IEP +A I ++ +
Sbjct: 130 IFVDTDADERILRRMVRDVQEQGDSVDCIMSRYLSMVKPMHEKFIEPTRKYADIIVHGNY 189
Query: 228 VSSFREAIYKLKCRSEAPGA 247
+ I K ++ A
Sbjct: 190 RQNVVTNILSQKIKNHLENA 209
>sp|Q38VV6|URK_LACSS Uridine kinase OS=Lactobacillus sakei subsp. sakei (strain 23K)
GN=udk PE=3 SV=1
Length = 211
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 510 LLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL---ESYFKS-----EQVKDFK 561
+ K P+I+G+ G SGSGKT+++ +A V L ++Y+K E+ ++
Sbjct: 1 MTSQKKAPIIIGVTGGSGSGKTTVSQAIAQKFANHSVMLLPQDAYYKHQDGSFEERQETN 60
Query: 562 YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL 621
YD + D LL + + ++N + + P++D + R+ E+ E VII EG+ L
Sbjct: 61 YDHPDAFDTDLLIEQATMLKNHQPIEQPVYDYKIHNRTD--EVVHVEPQDVIILEGILVL 118
Query: 622 -HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIE 676
+R +D+ + V L+ R+ RD G S +DI+M TV PMF + IE
Sbjct: 119 ADARLRDLMDIKVYVDTDDDIRLLRRMSRDMESRG--RSFDDIVMQYLKTVKPMFHEFIE 176
Query: 677 PHLVHAHL 684
P +A L
Sbjct: 177 PTKRYADL 184
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 93/192 (48%), Gaps = 24/192 (12%)
Query: 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGVD-------EGN-- 104
+KK I+ +G+ G SGSGKT++++ +A L+ + Y D E N
Sbjct: 4 QKKAPII-IGVTGGSGSGKTTVSQAIAQKFANHSVMLLPQDAYYKHQDGSFEERQETNYD 62
Query: 105 DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DA 163
D+ D D L++ L + P++DY+ NR +V+ V+I++G L DA
Sbjct: 63 HPDAFDTDLLIEQATMLKNHQPIEQPVYDYKIHNRT-DEVVHVEPQDVIILEGILVLADA 121
Query: 164 RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHH 218
RLR L+DI+V V L+ ++ D+ S D ++ ++ P+F + IEP +
Sbjct: 122 RLRDLMDIKVYVDTDDDIRLLRRMSRDMESRGRSFDDIVMQYLKTVKPMFHEFIEPTKRY 181
Query: 219 AQIRI----NNR 226
A + + NNR
Sbjct: 182 ADLIVPEGGNNR 193
>sp|O74427|URK1_SCHPO Uridine kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=urk1 PE=3 SV=1
Length = 454
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 14/148 (9%)
Query: 520 VGIGGPSGSGKTSLAH---KMANIVGCEVVSLESYFKS---EQVK-----DFKYDDFSSL 568
+GI GPSGSGKTS+A K N+ ++SL+S++KS EQ K D+ +D ++
Sbjct: 24 IGIAGPSGSGKTSVAQLIVKALNLPHVVILSLDSFYKSLNAEQKKRAFNNDYDFDSPEAI 83
Query: 569 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRK 627
D LL + +++ GR+ +PI+ R E +II EG++AL+ E IR
Sbjct: 84 DWDLLFVKLLELKQGRKVDIPIYSFNEHNR--LPETNTLFGASIIILEGIFALYDEKIRS 141
Query: 628 SLDLWIAVVGGVHSHLISRVQRDKSRMG 655
LD+ + + L R+ RD + G
Sbjct: 142 LLDVSVFLDTDSDVCLSRRLNRDINYRG 169
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 74/126 (58%), Gaps = 19/126 (15%)
Query: 65 VGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGVDE-------GNDLD-----SI 109
+GI GPSGSGKTS+A+ + + ++S++++ ++ ND D +I
Sbjct: 24 IGIAGPSGSGKTSVAQLIVKALNLPHVVILSLDSFYKSLNAEQKKRAFNNDYDFDSPEAI 83
Query: 110 DFDALVQNLQDLTEGKDTLIPMFDYQQKNRI-GSKVIKGASSGVVIVDGTYAL-DARLRS 167
D+D L L +L +G+ IP++ + + NR+ + + GAS ++I++G +AL D ++RS
Sbjct: 84 DWDLLFVKLLELKQGRKVDIPIYSFNEHNRLPETNTLFGAS--IIILEGIFALYDEKIRS 141
Query: 168 LLDIRV 173
LLD+ V
Sbjct: 142 LLDVSV 147
>sp|P44533|URK_HAEIN Uridine kinase OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=udk PE=3 SV=1
Length = 213
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 20/186 (10%)
Query: 518 VIVGIGGPSGSGKTSLA---HK-MANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
+I+ I G S SGK+S+A HK + N +GC+ +++ +SY+K +E+VK YD
Sbjct: 7 IIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMTERVKT-NYD 65
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP 623
+S+D LL +++ +++NG VP++ R+ E ++I EG+ L
Sbjct: 66 HPNSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTRTN--ETTHFTPKRIVILEGILLLTD 123
Query: 624 E-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 680
E +R+ D+ + V + I R+QRD G + + TV PMF Q IEP
Sbjct: 124 ERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQ 183
Query: 681 HAHLKI 686
+A + I
Sbjct: 184 YADIVI 189
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 30/187 (16%)
Query: 63 VTVGIGGPSGSGKTSLA----EKLASVIGCTLISM----------------ENYRVGVDE 102
+ + I G S SGK+S+A ++L + +GC I + E + D
Sbjct: 7 IIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMTERVKTNYDH 66
Query: 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL- 161
N S+D D L+Q+L++L G +P++ Y + R ++ +VI++G L
Sbjct: 67 PN---SMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTR-TNETTHFTPKRIVILEGILLLT 122
Query: 162 DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDL 216
D R+R L DI V V + I ++Q D+ + SL S+ID ++ P+F + IEP
Sbjct: 123 DERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSK 182
Query: 217 HHAQIRI 223
+A I I
Sbjct: 183 QYADIVI 189
>sp|A5UFT8|URK_HAEIG Uridine kinase OS=Haemophilus influenzae (strain PittGG) GN=udk
PE=3 SV=1
Length = 213
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 20/186 (10%)
Query: 518 VIVGIGGPSGSGKTSLA---HK-MANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
+I+ I G S SGK+S+A HK + N +GC+ +++ +SY+K +E+VK YD
Sbjct: 7 IIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMTERVKT-NYD 65
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP 623
+S+D LL +++ +++NG VP++ R+ E ++I EG+ L
Sbjct: 66 HPNSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTRTN--ETTHFTPKRIVILEGILLLTD 123
Query: 624 E-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 680
E +R+ D+ + V + I R+QRD G + + TV PMF Q IEP
Sbjct: 124 ERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQ 183
Query: 681 HAHLKI 686
+A + I
Sbjct: 184 YADIVI 189
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 30/187 (16%)
Query: 63 VTVGIGGPSGSGKTSLA----EKLASVIGCTLISM----------------ENYRVGVDE 102
+ + I G S SGK+S+A ++L + +GC I + E + D
Sbjct: 7 IIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMTERVKTNYDH 66
Query: 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL- 161
N S+D D L+Q+L++L G +P++ Y + R ++ +VI++G L
Sbjct: 67 PN---SMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTR-TNETTHFTPKRIVILEGILLLT 122
Query: 162 DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDL 216
D R+R L DI V V + I ++Q D+ + SL S+ID ++ P+F + IEP
Sbjct: 123 DERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSK 182
Query: 217 HHAQIRI 223
+A I I
Sbjct: 183 QYADIVI 189
>sp|Q4QP55|URK_HAEI8 Uridine kinase OS=Haemophilus influenzae (strain 86-028NP) GN=udk
PE=3 SV=1
Length = 213
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 20/186 (10%)
Query: 518 VIVGIGGPSGSGKTSLA---HK-MANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
+I+ I G S SGK+S+A HK + N +GC+ +++ +SY+K +E+VK YD
Sbjct: 7 IIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMTERVKT-NYD 65
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP 623
+S+D LL +++ +++NG VP++ R+ E ++I EG+ L
Sbjct: 66 HPNSMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTRTN--ETTHFTPKRIVILEGILLLTD 123
Query: 624 E-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 680
E +R+ D+ + V + I R+QRD G + + TV PMF Q IEP
Sbjct: 124 ERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSKQ 183
Query: 681 HAHLKI 686
+A + I
Sbjct: 184 YADIVI 189
Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 30/187 (16%)
Query: 63 VTVGIGGPSGSGKTSLA----EKLASVIGCTLISM----------------ENYRVGVDE 102
+ + I G S SGK+S+A ++L + +GC I + E + D
Sbjct: 7 IIIAITGASASGKSSIASTVHKELCNELGCQEIGIITEDSYYKDQSHLEMTERVKTNYDH 66
Query: 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL- 161
N S+D D L+Q+L++L G +P++ Y + R ++ +VI++G L
Sbjct: 67 PN---SMDRDLLIQHLKNLKNGSAVDVPVYSYVEHTR-TNETTHFTPKRIVILEGILLLT 122
Query: 162 DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDL 216
D R+R L DI V V + I ++Q D+ + SL S+ID ++ P+F + IEP
Sbjct: 123 DERVRQLADISVFVDTPLDICFIRRLQRDMEERGRSLQSVIDQYRATVRPMFLQFIEPSK 182
Query: 217 HHAQIRI 223
+A I I
Sbjct: 183 QYADIVI 189
>sp|Q9NWZ5|UCKL1_HUMAN Uridine-cytidine kinase-like 1 OS=Homo sapiens GN=UCKL1 PE=1 SV=2
Length = 548
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Query: 520 VGIGGPSGSGKTSLAH---KMANIVGCEVVSLESYFK--SEQVKD------FKYDDFSSL 568
+G+GG S SGKT++A + ++ ++S++S++K +EQ ++ F +D +
Sbjct: 101 IGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTEQQQEQAAHNNFNFDHPDAF 160
Query: 569 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRK 627
D L+ + ++ G+ KVPI+D T +R K+ + VIIFEG+ A + + +
Sbjct: 161 DFDLIISTLKKLKQGKSVKVPIYDFTTHSRK--KDWKTLYGANVIIFEGIMAFADKTLLE 218
Query: 628 SLDLWIAVVGGVHSHLISRVQRDKSRMG----CFMSQNDIMMTVFPMFQQHIEPHL 679
LD+ I V L+ R++RD S G + Q + V P F Q+I+P +
Sbjct: 219 LLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKF--VKPSFDQYIQPTM 272
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 91/179 (50%), Gaps = 24/179 (13%)
Query: 65 VGIGGPSGSGKTSLAEKLASVIGC---TLISMEN-YRVGVDEGNDL-----------DSI 109
+G+GG S SGKT++A + + L+SM++ Y+V ++ + D+
Sbjct: 101 IGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTEQQQEQAAHNNFNFDHPDAF 160
Query: 110 DFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS-KVIKGASSGVVIVDGTYAL-DARLRS 167
DFD ++ L+ L +GK +P++D+ +R K + GA+ V+I +G A D L
Sbjct: 161 DFDLIISTLKKLKQGKSVKVPIYDFTTHSRKKDWKTLYGAN--VIIFEGIMAFADKTLLE 218
Query: 168 LLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQI 221
LLD+++ V L+ +++ DI + ++ +I + P F ++I+P + A I
Sbjct: 219 LLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPSFDQYIQPTMRLADI 277
>sp|Q91YL3|UCKL1_MOUSE Uridine-cytidine kinase-like 1 OS=Mus musculus GN=Uckl1 PE=1 SV=1
Length = 548
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 20/176 (11%)
Query: 520 VGIGGPSGSGKTSLAH---KMANIVGCEVVSLESYFK------SEQV--KDFKYDDFSSL 568
+G+GG S SGKT++A + ++ ++S++S++K EQ +F +D +
Sbjct: 101 IGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTQQQQEQAACNNFNFDHPDAF 160
Query: 569 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRK 627
D L+ + ++ GR +VPI+D T +R K+ + VIIFEG+ A + + +
Sbjct: 161 DFDLIISTLKKLKQGRSVQVPIYDFTTHSRK--KDWKTLYGANVIIFEGIMAFADKTLLE 218
Query: 628 SLDLWIAVVGGVHSHLISRVQRDKSRMG----CFMSQNDIMMTVFPMFQQHIEPHL 679
LD+ I V L+ R++RD S G + Q + V P F Q+I+P +
Sbjct: 219 LLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKF--VKPAFDQYIQPTM 272
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
Query: 65 VGIGGPSGSGKTSLAEKLASVIGC---TLISMEN-YRVGVDEGNDL-----------DSI 109
+G+GG S SGKT++A + + L+SM++ Y+V + + D+
Sbjct: 101 IGLGGGSASGKTTVARMIIEALDVPWVVLLSMDSFYKVLTQQQQEQAACNNFNFDHPDAF 160
Query: 110 DFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS-KVIKGASSGVVIVDGTYAL-DARLRS 167
DFD ++ L+ L +G+ +P++D+ +R K + GA+ V+I +G A D L
Sbjct: 161 DFDLIISTLKKLKQGRSVQVPIYDFTTHSRKKDWKTLYGAN--VIIFEGIMAFADKTLLE 218
Query: 168 LLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQI 221
LLD+++ V L+ +++ DI + ++ +I + P F ++I+P + A I
Sbjct: 219 LLDMKIFVDTDSDIRLVRRLRRDISERGRDIEGVIKQYNKFVKPAFDQYIQPTMRLADI 277
>sp|Q55EL3|UCKA_DICDI Uridine-cytidine kinase A OS=Dictyostelium discoideum GN=udkA PE=3
SV=1
Length = 499
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 139/317 (43%), Gaps = 65/317 (20%)
Query: 517 PVIVGIGGPSGSGKTSLAHKMA---NIVGCEVVSLESYFKS----EQVKDFKYDDFSSLD 569
P+++G+ G S SGKT++ K+ N+ ++S++S++K+ + +D ++ D
Sbjct: 71 PLVIGVCGGSASGKTTVCDKIIANLNVRWVVLLSMDSFYKNLSKDNDPSKYNFDHPNAFD 130
Query: 570 LSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKS 628
L+ K IS++R G++ +P + +T +R ++ D VII EG+ L+ E+R
Sbjct: 131 YDLMVKTISELRAGKKVNIPKYCFKTHSRLVHQDTVYGAD--VIILEGILTLYSKELRDL 188
Query: 629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF--PMFQQHIEP--------- 677
+D+ I + L R++RD + G + F P F +I P
Sbjct: 189 MDIKIFIDTDDDVRLARRLKRDIAERGRTLESVLHQYNTFVKPSFDDYIIPLKKYADIIV 248
Query: 678 ----------HLVHAHLKIR---NDFDPVLSPE---------SSLFVLKSNKQV-AYQDI 714
+L+ H++++ FDP + + SS+ V+K Q+ A I
Sbjct: 249 PRGSDNIVAINLLTNHIRLKLKERGFDPEKTAQLDLEGLELPSSIHVIKETNQIKAMLSI 308
Query: 715 LKILDPA---------KFCS----SAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRF 761
L+ D + CS A ++ ++ PT G L + + RIC
Sbjct: 309 LRNKDTKVGDFVFYSDRLCSLIIEEALTYLPFTEKIVTTPT-GSLYHGEELNSRIC---- 363
Query: 762 ALLIREPLREGNFIIQP 778
AL++ LR G + QP
Sbjct: 364 ALVV---LRAGGCMEQP 377
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 92/177 (51%), Gaps = 20/177 (11%)
Query: 63 VTVGIGGPSGSGKTSLAEKLAS---VIGCTLISMENYRVGVDEGND--------LDSIDF 111
+ +G+ G S SGKT++ +K+ + V L+SM+++ + + ND ++ D+
Sbjct: 72 LVIGVCGGSASGKTTVCDKIIANLNVRWVVLLSMDSFYKNLSKDNDPSKYNFDHPNAFDY 131
Query: 112 DALVQNLQDLTEGKDTLIPMFDYQQKNR-IGSKVIKGASSGVVIVDGTYALDAR-LRSLL 169
D +V+ + +L GK IP + ++ +R + + GA V+I++G L ++ LR L+
Sbjct: 132 DLMVKTISELRAGKKVNIPKYCFKTHSRLVHQDTVYGAD--VIILEGILTLYSKELRDLM 189
Query: 170 DIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQI 221
DI++ + L +++ DI + +L+S++ + P F +I P +A I
Sbjct: 190 DIKIFIDTDDDVRLARRLKRDIAERGRTLESVLHQYNTFVKPSFDDYIIPLKKYADI 246
>sp|B2G882|URK_LACRJ Uridine kinase OS=Lactobacillus reuteri (strain JCM 1112) GN=udk
PE=3 SV=1
Length = 218
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 95/182 (52%), Gaps = 20/182 (10%)
Query: 511 LENKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSE------QVKDFK 561
++ PV++G+ G SGSGKT++++K+ + + ++++ ++Y+ + + K
Sbjct: 3 IQQNKRPVVIGVTGGSGSGKTTVSNKIYDQLHGQAIQIINQDTYYNDQSDMTMDERKAVN 62
Query: 562 YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL 621
YD + D L K ++D+R+ + ++P++D RS K + V E VII EG+ L
Sbjct: 63 YDHPLAFDTDFLIKQLTDLRSNKAIEMPVYDYTQYTRSD-KTVHV-EPTDVIILEGILIL 120
Query: 622 HPE-IRKSLDLWIAV-----VGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHI 675
E +R +D+ + V + + V+R +S + ++Q + TV PM+ Q +
Sbjct: 121 DDERLRDLMDIKVYVDTDDDIRIIRRIQRDMVERGRS-LDSIITQ--YLATVKPMYHQFV 177
Query: 676 EP 677
EP
Sbjct: 178 EP 179
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLD-------------SI 109
V +G+ G SGSGKT+++ K+ + I + N ++ +D+ +
Sbjct: 10 VVIGVTGGSGSGKTTVSNKIYDQLHGQAIQIINQDTYYNDQSDMTMDERKAVNYDHPLAF 69
Query: 110 DFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSL 168
D D L++ L DL K +P++DY Q R K + + V+I++G L D RLR L
Sbjct: 70 DTDFLIKQLTDLRSNKAIEMPVYDYTQYTR-SDKTVHVEPTDVIILEGILILDDERLRDL 128
Query: 169 LDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQI 221
+DI+V V +I ++Q D+ + SLDS+I ++ P++ + +EP +A I
Sbjct: 129 MDIKVYVDTDDDIRIIRRIQRDMVERGRSLDSIITQYLATVKPMYHQFVEPTKRYADI 186
>sp|A5VKU8|URK_LACRD Uridine kinase OS=Lactobacillus reuteri (strain DSM 20016) GN=udk
PE=3 SV=1
Length = 218
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 95/182 (52%), Gaps = 20/182 (10%)
Query: 511 LENKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSE------QVKDFK 561
++ PV++G+ G SGSGKT++++K+ + + ++++ ++Y+ + + K
Sbjct: 3 IQQNKRPVVIGVTGGSGSGKTTVSNKIYDQLHGQAIQIINQDTYYNDQSDMTMDERKAVN 62
Query: 562 YDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL 621
YD + D L K ++D+R+ + ++P++D RS K + V E VII EG+ L
Sbjct: 63 YDHPLAFDTDFLIKQLTDLRSNKAIEMPVYDYTQYTRSD-KTVHV-EPTDVIILEGILIL 120
Query: 622 HPE-IRKSLDLWIAV-----VGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHI 675
E +R +D+ + V + + V+R +S + ++Q + TV PM+ Q +
Sbjct: 121 DDERLRDLMDIKVYVDTDDDIRIIRRIQRDMVERGRS-LDSIITQ--YLATVKPMYHQFV 177
Query: 676 EP 677
EP
Sbjct: 178 EP 179
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLD-------------SI 109
V +G+ G SGSGKT+++ K+ + I + N ++ +D+ +
Sbjct: 10 VVIGVTGGSGSGKTTVSNKIYDQLHGQAIQIINQDTYYNDQSDMTMDERKAVNYDHPLAF 69
Query: 110 DFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSL 168
D D L++ L DL K +P++DY Q R K + + V+I++G L D RLR L
Sbjct: 70 DTDFLIKQLTDLRSNKAIEMPVYDYTQYTR-SDKTVHVEPTDVIILEGILILDDERLRDL 128
Query: 169 LDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQI 221
+DI+V V +I ++Q D+ + SLDS+I ++ P++ + +EP +A I
Sbjct: 129 MDIKVYVDTDDDIRIIRRIQRDMVERGRSLDSIITQYLATVKPMYHQFVEPTKRYADI 186
>sp|Q8CSB2|URK_STAES Uridine kinase OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=udk PE=3 SV=1
Length = 207
Score = 63.9 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 549 ESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSE 608
+S+ E+ + YD + D LL N+ D+RNG+ +VP +D RS KE +
Sbjct: 45 QSHLTFEERLETNYDHPFAFDNDLLIHNLKDLRNGKPVEVPTYDYSQHTRS--KETIAFD 102
Query: 609 DCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMM 665
VII EG++AL + +R +D+ I V ++ R+ RD G M N +
Sbjct: 103 PKDVIIVEGIFALENNTLRDMMDVKIYVDTDADLRILRRLTRDTKERGRTMESVINQYLN 162
Query: 666 TVFPMFQQHIEPHLVHAHLKI 686
V PM +Q IEP HA + I
Sbjct: 163 VVRPMHEQFIEPTKKHADIII 183
Score = 57.4 bits (137), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 108 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-LR 166
+ D D L+ NL+DL GK +P +DY Q R + I V+IV+G +AL+ LR
Sbjct: 63 AFDNDLLIHNLKDLRNGKPVEVPTYDYSQHTR-SKETIAFDPKDVIIVEGIFALENNTLR 121
Query: 167 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQI 221
++D+++ V ++ ++ D + +++S+I+ + P+ + IEP HA I
Sbjct: 122 DMMDVKIYVDTDADLRILRRLTRDTKERGRTMESVINQYLNVVRPMHEQFIEPTKKHADI 181
Query: 222 RI 223
I
Sbjct: 182 II 183
>sp|Q5HNT9|URK_STAEQ Uridine kinase OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=udk PE=3 SV=1
Length = 207
Score = 63.9 bits (154), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 549 ESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSE 608
+S+ E+ + YD + D LL N+ D+RNG+ +VP +D RS KE +
Sbjct: 45 QSHLTFEERLETNYDHPFAFDNDLLIHNLKDLRNGKPVEVPTYDYSQHTRS--KETIAFD 102
Query: 609 DCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMM 665
VII EG++AL + +R +D+ I V ++ R+ RD G M N +
Sbjct: 103 PKDVIIVEGIFALENNTLRDMMDVKIYVDTDADLRILRRLTRDTKERGRTMESVINQYLN 162
Query: 666 TVFPMFQQHIEPHLVHAHLKI 686
V PM +Q IEP HA + I
Sbjct: 163 VVRPMHEQFIEPTKKHADIII 183
Score = 57.4 bits (137), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 64/122 (52%), Gaps = 7/122 (5%)
Query: 108 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-LR 166
+ D D L+ NL+DL GK +P +DY Q R + I V+IV+G +AL+ LR
Sbjct: 63 AFDNDLLIHNLKDLRNGKPVEVPTYDYSQHTR-SKETIAFDPKDVIIVEGIFALENNTLR 121
Query: 167 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQI 221
++D+++ V ++ ++ D + +++S+I+ + P+ + IEP HA I
Sbjct: 122 DMMDVKIYVDTDADLRILRRLTRDTKERGRTMESVINQYLNVVRPMHEQFIEPTKKHADI 181
Query: 222 RI 223
I
Sbjct: 182 II 183
>sp|Q1WTY6|URK_LACS1 Uridine kinase OS=Lactobacillus salivarius (strain UCC118) GN=udk
PE=3 SV=1
Length = 213
Score = 63.2 bits (152), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 16/178 (8%)
Query: 512 ENKGLPVIVGIGGPSGSGKTSLAHKM-ANIVGCEVVSLE--SYFKSEQVKDFK------Y 562
ENK PVI+G+ G SGSGKT+++ + + G ++ L+ SY+ + F+ Y
Sbjct: 5 ENK--PVIIGVTGGSGSGKTTVSRAIFEQLHGHSLLMLQEDSYYNDQSDMPFEERIKTNY 62
Query: 563 DDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH 622
D ++ D LL K + D+ + + + PI+D RS E+E E VII EG+ L+
Sbjct: 63 DHPNAFDTELLVKQLKDLLDWKTIEKPIYDYTEHTRSS--EVEKVEPKEVIILEGILVLN 120
Query: 623 -PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 677
P +R +D+ I V +I R+QRD G + + TV PM+ Q IEP
Sbjct: 121 DPALRDLMDIKIFVDTDDDIRIIRRIQRDIEERGRSLQSVIDQYKSTVKPMYHQFIEP 178
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 26/181 (14%)
Query: 63 VTVGIGGPSGSGKTSLAEKL-ASVIGCTLISM---------------ENYRVGVDEGNDL 106
V +G+ G SGSGKT+++ + + G +L+ + E + D N
Sbjct: 9 VIIGVTGGSGSGKTTVSRAIFEQLHGHSLLMLQEDSYYNDQSDMPFEERIKTNYDHPNAF 68
Query: 107 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 165
D+ + LV+ L+DL + K P++DY + R S+V K V+I++G L D L
Sbjct: 69 DT---ELLVKQLKDLLDWKTIEKPIYDYTEHTR-SSEVEKVEPKEVIILEGILVLNDPAL 124
Query: 166 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQ 220
R L+DI++ V +I ++Q DI + SL S+ID ++ P++ + IEP +A
Sbjct: 125 RDLMDIKIFVDTDDDIRIIRRIQRDIEERGRSLQSVIDQYKSTVKPMYHQFIEPTKRYAD 184
Query: 221 I 221
I
Sbjct: 185 I 185
>sp|B1H116|UCK2_XENTR Uridine-cytidine kinase 2 OS=Xenopus tropicalis GN=uck2 PE=2 SV=1
Length = 261
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 100/214 (46%), Gaps = 23/214 (10%)
Query: 503 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYF 552
S QA+ G P ++G+ G + SGK+S+ K+ ++G ++S +S++
Sbjct: 5 SEQALPKHSPQNGQPFLIGVSGGTASGKSSVCSKIVQLLGQNEVDHHQKQVVMLSQDSFY 64
Query: 553 -------KSEQVK-DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKEL 604
KS+ +K F +D + D L+ K + ++ G+ ++P++D T +R +E
Sbjct: 65 RILTPEQKSKALKGQFNFDHPDAFDNELILKTLKELMEGKTVQIPVYDFVTHSRK--EET 122
Query: 605 EVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N 661
V V++FEG+ A + EIR + + V + L RV RD + G + Q
Sbjct: 123 LVVYPADVVLFEGILAFYMQEIRDMFQMKLFVDTDADTRLSRRVLRDINERGRDLEQVLT 182
Query: 662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLS 695
+ V P F++ P +A + I D V++
Sbjct: 183 QYITFVKPAFEEFCLPTKKYADVIIPRGADNVVA 216
Score = 38.1 bits (87), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 84/194 (43%), Gaps = 29/194 (14%)
Query: 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMEN-YRVGVDEG--- 103
+ G +G+ G + SGK+S+ K+ ++G ++S ++ YR+ E
Sbjct: 15 QNGQPFLIGVSGGTASGKSSVCSKIVQLLGQNEVDHHQKQVVMLSQDSFYRILTPEQKSK 74
Query: 104 --------NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIV 155
+ D+ D + +++ L++L EGK IP++D+ +R ++ + VV+
Sbjct: 75 ALKGQFNFDHPDAFDNELILKTLKELMEGKTVQIPVYDFVTHSRKEETLVV-YPADVVLF 133
Query: 156 DGTYALDAR-LRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS-----LDSLIDSIFPLFR 209
+G A + +R + +++ V L +V DI + L I + P F
Sbjct: 134 EGILAFYMQEIRDMFQMKLFVDTDADTRLSRRVLRDINERGRDLEQVLTQYITFVKPAFE 193
Query: 210 KHIEPDLHHAQIRI 223
+ P +A + I
Sbjct: 194 EFCLPTKKYADVII 207
>sp|B6EIY7|URK_ALISL Uridine kinase OS=Aliivibrio salmonicida (strain LFI1238) GN=udk
PE=3 SV=1
Length = 215
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 518 VIVGIGGPSGSGKTSLAHKMANIVGCEV-------VSLESYFK-------SEQVKDFKYD 563
+IVGI G S SGK+ +A + N + +V ++ +SY+K E+VK YD
Sbjct: 10 IIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDSYYKDQSHLTMEERVKT-NYD 68
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
++LD LLS+++ + G +P + R+ ++EV VII EG+ L
Sbjct: 69 HPNALDHRLLSEHLEQLMRGEAVNIPTYSYTEHTRTS--DVEVMTPKKVIILEGILLLTD 126
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 680
P +R + + + + L+ R +RD G M TV PMF Q I+P
Sbjct: 127 PRLRNLMHASVFMDTPLDICLLRRAKRDVEERGRSMESVFEQYQKTVRPMFMQFIDPSKQ 186
Query: 681 HA 682
HA
Sbjct: 187 HA 188
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
Query: 63 VTVGIGGPSGSGKTSLA----EKLASVIG----------------CTLISMENYRVGVDE 102
+ VGI G S SGK+ +A +L + +G L E + D
Sbjct: 10 IIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDSYYKDQSHLTMEERVKTNYDH 69
Query: 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL- 161
N ++D L ++L+ L G+ IP + Y + R S V V+I++G L
Sbjct: 70 PN---ALDHRLLSEHLEQLMRGEAVNIPTYSYTEHTRT-SDVEVMTPKKVIILEGILLLT 125
Query: 162 DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDL 216
D RLR+L+ V + + L+ + + D+ + S++S+ + ++ P+F + I+P
Sbjct: 126 DPRLRNLMHASVFMDTPLDICLLRRAKRDVEERGRSMESVFEQYQKTVRPMFMQFIDPSK 185
Query: 217 HHAQI 221
HA I
Sbjct: 186 QHADI 190
>sp|Q9KDD8|URK_BACHD Uridine kinase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=udk PE=3 SV=1
Length = 211
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 14/173 (8%)
Query: 517 PVIVGIGGPSGSGKTSLAHKM---ANIVGCEVVSLESYFKS------EQVKDFKYDDFSS 567
P+I+G+ G +GSGKT++A ++ N ++ ++Y+K E+ YD +
Sbjct: 5 PIIIGVAGGTGSGKTTVAKEIFYQFNEKSIVLIEQDAYYKDQSQLSLEERLQTNYDHPLA 64
Query: 568 LDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IR 626
D LL +++ + NG+ + P++D + RS E+ + E VII EG+ L E +R
Sbjct: 65 FDNDLLIEHLHSLLNGQAIEKPVYDYKLHTRSN--EVILVEPKDVIILEGILLLEDERLR 122
Query: 627 KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 677
+ +D+ + V +I R+ RD G + V PM Q IEP
Sbjct: 123 ELMDIKLFVDTDADIRIIRRMVRDIRERGRTLESVIEQYTKVVRPMHMQFIEP 175
Score = 56.6 bits (135), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 91/181 (50%), Gaps = 22/181 (12%)
Query: 63 VTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENY-----------RVGVDEGNDLDS 108
+ +G+ G +GSGKT++A+++ LI + Y R+ + + L +
Sbjct: 6 IIIGVAGGTGSGKTTVAKEIFYQFNEKSIVLIEQDAYYKDQSQLSLEERLQTNYDHPL-A 64
Query: 109 IDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRS 167
D D L+++L L G+ P++DY+ R ++VI V+I++G L D RLR
Sbjct: 65 FDNDLLIEHLHSLLNGQAIEKPVYDYKLHTR-SNEVILVEPKDVIILEGILLLEDERLRE 123
Query: 168 LLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQIR 222
L+DI++ V +I ++ DI + +L+S+I+ + P+ + IEP +A +
Sbjct: 124 LMDIKLFVDTDADIRIIRRMVRDIRERGRTLESVIEQYTKVVRPMHMQFIEPTKRYADVI 183
Query: 223 I 223
I
Sbjct: 184 I 184
>sp|B9E6Y9|URK_MACCJ Uridine kinase OS=Macrococcus caseolyticus (strain JCSC5402) GN=udk
PE=3 SV=1
Length = 206
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 14/169 (8%)
Query: 530 KTSLAHK-MANIVGCEVVSLES--YFKSEQVKDFK------YDDFSSLDLSLLSKNISDI 580
KTS+ K + N+ G V +E Y+K++ F+ YD + D LL +N+ D+
Sbjct: 17 KTSVTSKILKNLEGYSVALIEQDYYYKNQDHLTFEERLKTNYDHPFAFDNELLIQNLKDL 76
Query: 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGV 639
RNG+ +VP +D RS ++ E VII EG++AL + +R +D+ I V
Sbjct: 77 RNGKTVEVPTYDYSNHTRS--EKTITFEPKDVIIVEGIFALENSNLRDLMDVKIYVDTDA 134
Query: 640 HSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKI 686
++ R+ RD G M + + V PM Q IEP +A + I
Sbjct: 135 DLRILRRIVRDIEERGRTMESVIDQYLTVVRPMHNQFIEPTKKYADIII 183
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 108 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLR 166
+ D + L+QNL+DL GK +P +DY R K I V+IV+G +AL+ + LR
Sbjct: 63 AFDNELLIQNLKDLRNGKTVEVPTYDYSNHTR-SEKTITFEPKDVIIVEGIFALENSNLR 121
Query: 167 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQI 221
L+D+++ V ++ ++ DI + +++S+ID + P+ + IEP +A I
Sbjct: 122 DLMDVKIYVDTDADLRILRRIVRDIEERGRTMESVIDQYLTVVRPMHNQFIEPTKKYADI 181
Query: 222 RI 223
I
Sbjct: 182 II 183
>sp|C0ZAS6|URK_BREBN Uridine kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC
100599) GN=udk PE=3 SV=1
Length = 214
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 20/183 (10%)
Query: 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMENY----------RVGVDEGNDL 106
G V +G+ G SGSGKT++A++L T+I ++Y + +
Sbjct: 2 GNPVLIGVAGGSGSGKTTVAKELYRQFQNDSVTMIEQDSYYKDQSHLSPEERALTNYDHP 61
Query: 107 DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARL 165
+ D D L+ +LQ+L +GK P++D++ NR + I+ V+I++G L D R+
Sbjct: 62 FAFDNDLLLAHLQELMQGKAIQKPIYDFKVHNRKPEQ-IQVDPKDVIILEGMLILEDERI 120
Query: 166 RSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQ 220
R+L+DI+V V + ++ DI + SLDS++ + + P+ + IEP +A
Sbjct: 121 RNLMDIKVYVDTDADVRIARRIVRDIEERGRSLDSVVTQYLNVVRPMHLQFIEPTKRYAD 180
Query: 221 IRI 223
+ I
Sbjct: 181 VII 183
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 85/175 (48%), Gaps = 14/175 (8%)
Query: 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL---ESYFKS------EQVKDFKYDDF 565
G PV++G+ G SGSGKT++A ++ + V++ +SY+K E+ YD
Sbjct: 2 GNPVLIGVAGGSGSGKTTVAKELYRQFQNDSVTMIEQDSYYKDQSHLSPEERALTNYDHP 61
Query: 566 SSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE- 624
+ D LL ++ ++ G+ + PI+D + R ++++V + VII EG+ L E
Sbjct: 62 FAFDNDLLLAHLQELMQGKAIQKPIYDFKVHNRKP-EQIQV-DPKDVIILEGMLILEDER 119
Query: 625 IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 677
IR +D+ + V + R+ RD G + + V PM Q IEP
Sbjct: 120 IRNLMDIKVYVDTDADVRIARRIVRDIEERGRSLDSVVTQYLNVVRPMHLQFIEP 174
>sp|B0UT65|URK_HAES2 Uridine kinase OS=Haemophilus somnus (strain 2336) GN=udk PE=3 SV=1
Length = 213
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 14/159 (8%)
Query: 531 TSLAHKMANIVGCE---VVSLESYFKSEQVKDFK------YDDFSSLDLSLLSKNISDIR 581
+++ ++ N +GCE +V+ +SY+K + F+ YD +S+D LL +++ D++
Sbjct: 24 STIHEELCNELGCEEIGIVTEDSYYKDQTHLSFEERIKTNYDHPNSMDRDLLIQHLCDLK 83
Query: 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRKSLDLWIAVVGGVH 640
G+ +P++ R+ +E+ E VII EG+ L E IR+ +++ + V +
Sbjct: 84 KGKAVDIPVYSYVEHTRT--QEVTRFEPKKVIILEGILLLTDERIRQEVNMSVFVDTPLD 141
Query: 641 SHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 677
I R+QRD G + + TV PMF Q IEP
Sbjct: 142 ICFIRRLQRDMEERGRSLQSVIDQYKSTVRPMFLQFIEP 180
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 26/168 (15%)
Query: 76 TSLAEKLASVIGCTLISM----------------ENYRVGVDEGNDLDSIDFDALVQNLQ 119
+++ E+L + +GC I + E + D N S+D D L+Q+L
Sbjct: 24 STIHEELCNELGCEEIGIVTEDSYYKDQTHLSFEERIKTNYDHPN---SMDRDLLIQHLC 80
Query: 120 DLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGG 178
DL +GK IP++ Y + R +V + V+I++G L D R+R +++ V V
Sbjct: 81 DLKKGKAVDIPVYSYVEHTR-TQEVTRFEPKKVIILEGILLLTDERIRQEVNMSVFVDTP 139
Query: 179 VHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQI 221
+ I ++Q D+ + SL S+ID ++ P+F + IEP +A I
Sbjct: 140 LDICFIRRLQRDMEERGRSLQSVIDQYKSTVRPMFLQFIEPSKQYADI 187
>sp|Q0I2Y9|URK_HAES1 Uridine kinase OS=Haemophilus somnus (strain 129Pt) GN=udk PE=3
SV=1
Length = 213
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 14/159 (8%)
Query: 531 TSLAHKMANIVGCE---VVSLESYFKSEQVKDFK------YDDFSSLDLSLLSKNISDIR 581
+++ ++ N +GCE +V+ +SY+K + F+ YD +S+D LL +++ D++
Sbjct: 24 STIHEELCNELGCEEIGIVTEDSYYKDQTHLSFEERIKTNYDHPNSMDRDLLIQHLCDLK 83
Query: 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRKSLDLWIAVVGGVH 640
G+ +P++ R+ +E+ E VII EG+ L E IR+ +++ + V +
Sbjct: 84 KGKAVDIPVYSYVEHTRT--QEVTRFEPKKVIILEGILLLTDERIRQEVNMSVFVDTPLD 141
Query: 641 SHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 677
I R+QRD G + + TV PMF Q IEP
Sbjct: 142 ICFIRRLQRDMEERGRSLQSVIDQYKSTVRPMFLQFIEP 180
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 82/168 (48%), Gaps = 26/168 (15%)
Query: 76 TSLAEKLASVIGCTLISM----------------ENYRVGVDEGNDLDSIDFDALVQNLQ 119
+++ E+L + +GC I + E + D N S+D D L+Q+L
Sbjct: 24 STIHEELCNELGCEEIGIVTEDSYYKDQTHLSFEERIKTNYDHPN---SMDRDLLIQHLC 80
Query: 120 DLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGG 178
DL +GK IP++ Y + R +V + V+I++G L D R+R +++ V V
Sbjct: 81 DLKKGKAVDIPVYSYVEHTR-TQEVTRFEPKKVIILEGILLLTDERIRQEVNMSVFVDTP 139
Query: 179 VHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHHAQI 221
+ I ++Q D+ + SL S+ID ++ P+F + IEP +A I
Sbjct: 140 LDICFIRRLQRDMEERGRSLQSVIDQYKSTVRPMFLQFIEPSKQYADI 187
>sp|Q9BZX2|UCK2_HUMAN Uridine-cytidine kinase 2 OS=Homo sapiens GN=UCK2 PE=1 SV=1
Length = 261
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFK---SEQVK- 558
N G P ++G+ G + SGK+S+ K+ ++G ++S +S+++ SEQ
Sbjct: 16 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAK 75
Query: 559 ----DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVII 614
F +D + D L+ K + +I G+ ++P++D + +R +E V++
Sbjct: 76 ALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRK--EETVTVYPADVVL 133
Query: 615 FEGVYALHP-EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMF 671
FEG+ A + E+R + + V + L RV RD S G + Q + + V P F
Sbjct: 134 FEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAF 193
Query: 672 QQHIEPHLVHAHLKI 686
++ P +A + I
Sbjct: 194 EEFCLPTKKYADVII 208
Score = 42.7 bits (99), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 30/203 (14%)
Query: 50 KSIQELREKKGG-IVTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMEN-YR 97
+++Q ++ GG +G+ G + SGK+S+ K+ ++G ++S ++ YR
Sbjct: 7 QTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 66
Query: 98 VGVDEG-----------NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146
V E + D+ D + +++ L+++TEGK IP++D+ +R + +
Sbjct: 67 VLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSR-KEETVT 125
Query: 147 GASSGVVIVDGTYALDAR-LRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS-----LDSL 200
+ VV+ +G A ++ +R L +++ V L +V DI + L
Sbjct: 126 VYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQY 185
Query: 201 IDSIFPLFRKHIEPDLHHAQIRI 223
I + P F + P +A + I
Sbjct: 186 ITFVKPAFEEFCLPTKKYADVII 208
>sp|Q9QYG8|UCK2_RAT Uridine-cytidine kinase 2 OS=Rattus norvegicus GN=Uck2 PE=2 SV=2
Length = 261
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFK---SEQVK- 558
N G P ++G+ G + SGK+S+ K+ ++G ++S +S+++ SEQ
Sbjct: 16 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYHQKQVVILSQDSFYRVLTSEQKAK 75
Query: 559 ----DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVII 614
F +D + D L+ K + +I G+ ++P++D + +R +E V++
Sbjct: 76 ALKGQFNFDHPDAFDNELIFKTLKEITEGKTVQIPVYDFVSHSRK--EETVTIYPADVVL 133
Query: 615 FEGVYALHP-EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMF 671
FEG+ A + E+R + + V + L RV RD S G + Q + + V P F
Sbjct: 134 FEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAF 193
Query: 672 QQHIEPHLVHAHLKI 686
++ P +A + I
Sbjct: 194 EEFCLPTKKYADVII 208
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 30/203 (14%)
Query: 50 KSIQELREKKGGI-VTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMEN-YR 97
+++Q ++ GG +G+ G + SGK+S+ K+ ++G ++S ++ YR
Sbjct: 7 QTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYHQKQVVILSQDSFYR 66
Query: 98 VGVDEG-----------NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146
V E + D+ D + + + L+++TEGK IP++D+ +R + +
Sbjct: 67 VLTSEQKAKALKGQFNFDHPDAFDNELIFKTLKEITEGKTVQIPVYDFVSHSR-KEETVT 125
Query: 147 GASSGVVIVDGTYALDAR-LRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS-----LDSL 200
+ VV+ +G A ++ +R L +++ V L +V DI + L
Sbjct: 126 IYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQY 185
Query: 201 IDSIFPLFRKHIEPDLHHAQIRI 223
I + P F + P +A + I
Sbjct: 186 ITFVKPAFEEFCLPTKKYADVII 208
>sp|Q99PM9|UCK2_MOUSE Uridine-cytidine kinase 2 OS=Mus musculus GN=Uck2 PE=1 SV=1
Length = 261
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 92/195 (47%), Gaps = 23/195 (11%)
Query: 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFK---SEQVK- 558
N G P ++G+ G + SGK+S+ K+ ++G ++S +S+++ SEQ
Sbjct: 16 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYHQKQVVILSQDSFYRVLTSEQKAK 75
Query: 559 ----DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVII 614
F +D + D L+ K + +I G+ ++P++D + +R +E V++
Sbjct: 76 ALKGQFNFDHPDAFDNELIFKTLKEITEGKTVQIPVYDFVSHSRK--EETVTIYPADVVL 133
Query: 615 FEGVYALHP-EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMF 671
FEG+ A + E+R + + V + L RV RD S G + Q + + V P F
Sbjct: 134 FEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAF 193
Query: 672 QQHIEPHLVHAHLKI 686
++ P +A + I
Sbjct: 194 EEFCLPTKKYADVII 208
Score = 42.0 bits (97), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 91/203 (44%), Gaps = 30/203 (14%)
Query: 50 KSIQELREKKGGI-VTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMEN-YR 97
+++Q ++ GG +G+ G + SGK+S+ K+ ++G ++S ++ YR
Sbjct: 7 QTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYHQKQVVILSQDSFYR 66
Query: 98 VGVDEG-----------NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIK 146
V E + D+ D + + + L+++TEGK IP++D+ +R + +
Sbjct: 67 VLTSEQKAKALKGQFNFDHPDAFDNELIFKTLKEITEGKTVQIPVYDFVSHSR-KEETVT 125
Query: 147 GASSGVVIVDGTYALDAR-LRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS-----LDSL 200
+ VV+ +G A ++ +R L +++ V L +V DI + L
Sbjct: 126 IYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQY 185
Query: 201 IDSIFPLFRKHIEPDLHHAQIRI 223
I + P F + P +A + I
Sbjct: 186 ITFVKPAFEEFCLPTKKYADVII 208
>sp|Q8T154|UCKB_DICDI Uridine-cytidine kinase B OS=Dictyostelium discoideum GN=udkB PE=3
SV=2
Length = 243
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 94/191 (49%), Gaps = 14/191 (7%)
Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCE---VVSLESYFK------SEQVKDFKYDDFSS 567
P I+G+ G + SGKT++ ++ + + ++ L+S+++ E V + +D +
Sbjct: 15 PFIIGVTGGTASGKTTVCDEIMKRLENKRIAIICLDSFYRPLSKEDRETVASYNFDHPDA 74
Query: 568 LDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IR 626
D SL+ + D+++G+ ++P + ++ +R +E D VI+FEG+ + + + +R
Sbjct: 75 FDWSLVENALRDLKDGKDIEIPTYCFKSHSR--LEETVGLGDVDVILFEGILSFYTQSLR 132
Query: 627 KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF--PMFQQHIEPHLVHAHL 684
+ +D+ I V + L RV RD + G + F P F +I P HA +
Sbjct: 133 EQMDIKIFVDTDSDTRLSRRVMRDIAERGRSLEGVLYQYEKFVKPAFDDYILPTKKHADV 192
Query: 685 KIRNDFDPVLS 695
I D V++
Sbjct: 193 IIPRGADNVVA 203
Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 34/185 (18%)
Query: 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV------------DEGNDLDSIDFD 112
+G+ G + SGKT++ +++ + +EN R+ + ++ + S +FD
Sbjct: 18 IGVTGGTASGKTTVCDEI-------MKRLENKRIAIICLDSFYRPLSKEDRETVASYNFD 70
Query: 113 -------ALVQN-LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR 164
+LV+N L+DL +GKD IP + ++ +R+ V G V++ +G + +
Sbjct: 71 HPDAFDWSLVENALRDLKDGKDIEIPTYCFKSHSRLEETVGLG-DVDVILFEGILSFYTQ 129
Query: 165 -LRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHH 218
LR +DI++ V L +V DI + SL+ ++ + P F +I P H
Sbjct: 130 SLREQMDIKIFVDTDSDTRLSRRVMRDIAERGRSLEGVLYQYEKFVKPAFDDYILPTKKH 189
Query: 219 AQIRI 223
A + I
Sbjct: 190 ADVII 194
>sp|Q6D7B4|URK_ERWCT Uridine kinase OS=Erwinia carotovora subsp. atroseptica (strain
SCRI 1043 / ATCC BAA-672) GN=udk PE=3 SV=1
Length = 213
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 89/177 (50%), Gaps = 20/177 (11%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
VI+GI G S SGK+ +L ++ + VG + V+S +SY+K E+VK YD
Sbjct: 9 VIIGISGASASGKSLISSTLYRELRDQVGDQHIGVISEDSYYKDQSHLTMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
SS+D SLL K++ +++G+ +VP + R +E E VII EG+ L
Sbjct: 68 HPSSMDHSLLIKHLQMLKSGQAIEVPQYSYVEHTRK--QETVHIELKKVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIEP 677
+R ++ I V + L+ R++RD + G M TV PMF Q IEP
Sbjct: 126 ARLRNEMNFSIFVDTPLDICLLRRMRRDVNERGRSMDSVMEQYQKTVRPMFLQFIEP 182
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 91/183 (49%), Gaps = 26/183 (14%)
Query: 63 VTVGIGGPSGSGK----TSLAEKLASVIG---CTLISMENY-----------RVGVDEGN 104
V +GI G S SGK ++L +L +G +IS ++Y RV + +
Sbjct: 9 VIIGISGASASGKSLISSTLYRELRDQVGDQHIGVISEDSYYKDQSHLTMEERVKTNYDH 68
Query: 105 DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DA 163
S+D L+++LQ L G+ +P + Y + R + + V+I++G L DA
Sbjct: 69 P-SSMDHSLLIKHLQMLKSGQAIEVPQYSYVEHTR-KQETVHIELKKVIILEGILLLTDA 126
Query: 164 RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHH 218
RLR+ ++ + V + L+ +++ D+ + S+DS+++ ++ P+F + IEP +
Sbjct: 127 RLRNEMNFSIFVDTPLDICLLRRMRRDVNERGRSMDSVMEQYQKTVRPMFLQFIEPSKQY 186
Query: 219 AQI 221
A I
Sbjct: 187 ADI 189
>sp|B5FG51|URK_VIBFM Uridine kinase OS=Vibrio fischeri (strain MJ11) GN=udk PE=3 SV=1
Length = 215
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 518 VIVGIGGPSGSGKTSLAHKMANIVGCE-------VVSLESYFK-------SEQVKDFKYD 563
+IVGI G S SGK+ +A + N + + V++ +SY+K E+VK YD
Sbjct: 10 IIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDSYYKDQSHLTMEERVKT-NYD 68
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
++LD LL +++ + G +P + R+ E++V VII EG+ L
Sbjct: 69 HPNALDHELLCEHLEQLMRGEAVNIPTYSYTEHTRTS--EVDVMTPKKVIILEGILLLTD 126
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 680
P +R + + + + L+ R +RD G M TV PMF Q I+P
Sbjct: 127 PRLRNLMHASVFMDTPLDICLLRRARRDVEERGRTMESVFEQYQKTVRPMFMQFIDPSKQ 186
Query: 681 HA 682
HA
Sbjct: 187 HA 188
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
Query: 63 VTVGIGGPSGSGKTSLA----EKLASVIG----------------CTLISMENYRVGVDE 102
+ VGI G S SGK+ +A +L + +G L E + D
Sbjct: 10 IIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDSYYKDQSHLTMEERVKTNYDH 69
Query: 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL- 161
N ++D + L ++L+ L G+ IP + Y + R S+V V+I++G L
Sbjct: 70 PN---ALDHELLCEHLEQLMRGEAVNIPTYSYTEHTRT-SEVDVMTPKKVIILEGILLLT 125
Query: 162 DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDL 216
D RLR+L+ V + + L+ + + D+ + +++S+ + ++ P+F + I+P
Sbjct: 126 DPRLRNLMHASVFMDTPLDICLLRRARRDVEERGRTMESVFEQYQKTVRPMFMQFIDPSK 185
Query: 217 HHAQI 221
HA I
Sbjct: 186 QHADI 190
>sp|Q5E3Z9|URK_VIBF1 Uridine kinase OS=Vibrio fischeri (strain ATCC 700601 / ES114)
GN=udk PE=3 SV=1
Length = 215
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 518 VIVGIGGPSGSGKTSLAHKMANIVGCE-------VVSLESYFK-------SEQVKDFKYD 563
+IVGI G S SGK+ +A + N + + V++ +SY+K E+VK YD
Sbjct: 10 IIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDSYYKDQSHLTMEERVKT-NYD 68
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
++LD LL +++ + G +P + R+ E++V VII EG+ L
Sbjct: 69 HPNALDHELLCEHLEQLMRGEAVNIPTYSYTEHTRTS--EVDVMTPKKVIILEGILLLTD 126
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLV 680
P +R + + + + L+ R +RD G M TV PMF Q I+P
Sbjct: 127 PRLRNLMHASVFMDTPLDICLLRRARRDVEERGRTMESVFEQYQKTVRPMFMQFIDPSKQ 186
Query: 681 HA 682
HA
Sbjct: 187 HA 188
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 85/185 (45%), Gaps = 30/185 (16%)
Query: 63 VTVGIGGPSGSGKTSLA----EKLASVIG----------------CTLISMENYRVGVDE 102
+ VGI G S SGK+ +A +L + +G L E + D
Sbjct: 10 IIVGIAGASASGKSLIASTIYNELRAKVGDHQIGVITEDSYYKDQSHLTMEERVKTNYDH 69
Query: 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL- 161
N ++D + L ++L+ L G+ IP + Y + R S+V V+I++G L
Sbjct: 70 PN---ALDHELLCEHLEQLMRGEAVNIPTYSYTEHTRT-SEVDVMTPKKVIILEGILLLT 125
Query: 162 DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDL 216
D RLR+L+ V + + L+ + + D+ + +++S+ + ++ P+F + I+P
Sbjct: 126 DPRLRNLMHASVFMDTPLDICLLRRARRDVEERGRTMESVFEQYQKTVRPMFMQFIDPSK 185
Query: 217 HHAQI 221
HA I
Sbjct: 186 QHADI 190
>sp|A6TBG6|URK_KLEP7 Uridine kinase OS=Klebsiella pneumoniae subsp. pneumoniae (strain
ATCC 700721 / MGH 78578) GN=udk PE=3 SV=1
Length = 213
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
VIVGI G S SGK+ +L ++ VG E V+ +SY+K E+VK YD
Sbjct: 9 VIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
SS+D SLL +++ +++G+ ++P++ R+ + V E VII EG+ L
Sbjct: 68 HPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTP-NTIHV-EPKKVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 677
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRNELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 28/184 (15%)
Query: 63 VTVGIGGPSGSGKTSLAEKLA---------SVIGC----------TLISMENYRVGVDEG 103
V VGI G S SGK+ +A L IG + +SME RV +
Sbjct: 9 VIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEE-RVKTNYD 67
Query: 104 NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-D 162
+ S+D L Q+LQ L G+ +P++ Y + R + I V+I++G L D
Sbjct: 68 HP-SSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTPN-TIHVEPKKVIILEGILLLTD 125
Query: 163 ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLH 217
ARLR+ L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP
Sbjct: 126 ARLRNELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQ 185
Query: 218 HAQI 221
+A I
Sbjct: 186 YADI 189
>sp|B5XPC8|URK_KLEP3 Uridine kinase OS=Klebsiella pneumoniae (strain 342) GN=udk PE=3
SV=1
Length = 213
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
VIVGI G S SGK+ +L ++ VG E V+ +SY+K E+VK YD
Sbjct: 9 VIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
SS+D SLL +++ +++G+ ++P++ R+ + V E VII EG+ L
Sbjct: 68 HPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTP-NTIHV-EPKKVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 677
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRNELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 88/184 (47%), Gaps = 28/184 (15%)
Query: 63 VTVGIGGPSGSGKTSLAEKLA---------SVIGC----------TLISMENYRVGVDEG 103
V VGI G S SGK+ +A L IG + +SME RV +
Sbjct: 9 VIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEE-RVKTNYD 67
Query: 104 NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-D 162
+ S+D L Q+LQ L G+ +P++ Y + R + I V+I++G L D
Sbjct: 68 HP-SSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTPN-TIHVEPKKVIILEGILLLTD 125
Query: 163 ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLH 217
ARLR+ L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP
Sbjct: 126 ARLRNELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQ 185
Query: 218 HAQI 221
+A I
Sbjct: 186 YADI 189
>sp|Q5SKR5|URK_THET8 Uridine kinase OS=Thermus thermophilus (strain HB8 / ATCC 27634 /
DSM 579) GN=udk PE=1 SV=1
Length = 211
Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEV--VSLESYFKS------EQVKDFKYDDFSSL 568
P ++GI G + SGKT+LA +A +G V + ++ Y+K E+ YD +
Sbjct: 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAF 65
Query: 569 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-EIRK 627
DL+L ++ + G ++P++D RS + V+I EG+ L+P E+R
Sbjct: 66 DLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRR--TPVRPAPVVILEGILVLYPKELRD 123
Query: 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLK 685
+DL + V I R++RD G + + V PM +EP +A +
Sbjct: 124 LMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVI 183
Query: 686 I-RNDFDPV 693
+ R +PV
Sbjct: 184 VPRGGQNPV 192
Score = 49.3 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 25/178 (14%)
Query: 65 VGIGGPSGSGKTSLAEKLASVIG--CTLISMENY-------------RVGVDEGNDLDSI 109
+GI G + SGKT+LA+ LA +G L+ M++Y RV D D+
Sbjct: 9 IGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHP---DAF 65
Query: 110 DFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-LRSL 168
D +++ Q L G +P++D++ R + + VVI++G L + LR L
Sbjct: 66 DLALYLEHAQALLRGLPVEMPVYDFRAYTR-SPRRTPVRPAPVVILEGILVLYPKELRDL 124
Query: 169 LDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQI 221
+D++V V I +++ D+ + SL+ ++ + + P+ +EP +A +
Sbjct: 125 MDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADV 182
>sp|Q72L53|URK_THET2 Uridine kinase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163
/ DSM 7039) GN=udk PE=3 SV=1
Length = 211
Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEV--VSLESYFKS------EQVKDFKYDDFSSL 568
P ++GI G + SGKT+LA +A +G V + ++ Y+K E+ YD +
Sbjct: 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAF 65
Query: 569 DLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-EIRK 627
DL+L ++ + G ++P++D RS + V+I EG+ L+P E+R
Sbjct: 66 DLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRR--TPVRPAPVVILEGILVLYPKELRD 123
Query: 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLK 685
+DL + V I R++RD G + + V PM +EP +A +
Sbjct: 124 LMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVI 183
Query: 686 I-RNDFDPV 693
+ R +PV
Sbjct: 184 VPRGGQNPV 192
Score = 49.3 bits (116), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 25/178 (14%)
Query: 65 VGIGGPSGSGKTSLAEKLASVIG--CTLISMENY-------------RVGVDEGNDLDSI 109
+GI G + SGKT+LA+ LA +G L+ M++Y RV D D+
Sbjct: 9 IGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHP---DAF 65
Query: 110 DFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-LRSL 168
D +++ Q L G +P++D++ R + + VVI++G L + LR L
Sbjct: 66 DLALYLEHAQALLRGLPVEMPVYDFRAYTR-SPRRTPVRPAPVVILEGILVLYPKELRDL 124
Query: 169 LDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLHHAQI 221
+D++V V I +++ D+ + SL+ ++ + + P+ +EP +A +
Sbjct: 125 MDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADV 182
>sp|P0A8F7|URK_SHIFL Uridine kinase OS=Shigella flexneri GN=udk PE=3 SV=1
Length = 213
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
VI+GI G S SGK+ +L ++ VG E V+ + Y+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
S++D SLL +++ ++ G +P++ R KE E VII EG+ L
Sbjct: 68 HPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR--MKETVTVEPKKVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 677
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 28/184 (15%)
Query: 63 VTVGIGGPSGSGKT----SLAEKLASVIG----------C-----TLISMENYRVGVDEG 103
V +GI G S SGK+ +L +L +G C + +SME RV +
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEE-RVKTNYD 67
Query: 104 NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-D 162
+ ++D L+++LQ L G +P++ Y + R+ + + V+I++G L D
Sbjct: 68 HP-SAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVTVEPKKVIILEGILLLTD 125
Query: 163 ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLH 217
ARLR L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQ 185
Query: 218 HAQI 221
+A I
Sbjct: 186 YADI 189
>sp|P0A8F4|URK_ECOLI Uridine kinase OS=Escherichia coli (strain K12) GN=udk PE=3 SV=1
Length = 213
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
VI+GI G S SGK+ +L ++ VG E V+ + Y+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
S++D SLL +++ ++ G +P++ R KE E VII EG+ L
Sbjct: 68 HPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR--MKETVTVEPKKVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 677
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 28/184 (15%)
Query: 63 VTVGIGGPSGSGKT----SLAEKLASVIG----------C-----TLISMENYRVGVDEG 103
V +GI G S SGK+ +L +L +G C + +SME RV +
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEE-RVKTNYD 67
Query: 104 NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-D 162
+ ++D L+++LQ L G +P++ Y + R+ + + V+I++G L D
Sbjct: 68 HP-SAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVTVEPKKVIILEGILLLTD 125
Query: 163 ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLH 217
ARLR L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQ 185
Query: 218 HAQI 221
+A I
Sbjct: 186 YADI 189
>sp|P0A8F5|URK_ECOL6 Uridine kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=udk PE=3 SV=1
Length = 213
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
VI+GI G S SGK+ +L ++ VG E V+ + Y+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
S++D SLL +++ ++ G +P++ R KE E VII EG+ L
Sbjct: 68 HPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR--MKETVTVEPKKVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 677
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 28/184 (15%)
Query: 63 VTVGIGGPSGSGKT----SLAEKLASVIG----------C-----TLISMENYRVGVDEG 103
V +GI G S SGK+ +L +L +G C + +SME RV +
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEE-RVKTNYD 67
Query: 104 NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-D 162
+ ++D L+++LQ L G +P++ Y + R+ + + V+I++G L D
Sbjct: 68 HP-SAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVTVEPKKVIILEGILLLTD 125
Query: 163 ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLH 217
ARLR L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQ 185
Query: 218 HAQI 221
+A I
Sbjct: 186 YADI 189
>sp|P0A8F6|URK_ECO57 Uridine kinase OS=Escherichia coli O157:H7 GN=udk PE=3 SV=1
Length = 213
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
VI+GI G S SGK+ +L ++ VG E V+ + Y+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
S++D SLL +++ ++ G +P++ R KE E VII EG+ L
Sbjct: 68 HPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR--MKETVTVEPKKVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 677
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 28/184 (15%)
Query: 63 VTVGIGGPSGSGKT----SLAEKLASVIG----------C-----TLISMENYRVGVDEG 103
V +GI G S SGK+ +L +L +G C + +SME RV +
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEE-RVKTNYD 67
Query: 104 NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-D 162
+ ++D L+++LQ L G +P++ Y + R+ + + V+I++G L D
Sbjct: 68 HP-SAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVTVEPKKVIILEGILLLTD 125
Query: 163 ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLH 217
ARLR L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQ 185
Query: 218 HAQI 221
+A I
Sbjct: 186 YADI 189
>sp|A4WCB6|URK_ENT38 Uridine kinase OS=Enterobacter sp. (strain 638) GN=udk PE=3 SV=1
Length = 213
Score = 60.8 bits (146), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 93/179 (51%), Gaps = 24/179 (13%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
VI+GI G S SGK+ +L ++ + VG E V+ +SY+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELRDQVGDEHIGVIPEDSYYKDQSHLSMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
+++D SLL +++ I+NG +P++ R+ ++ E VII EG+ L
Sbjct: 68 HPNAMDHSLLFQHLQMIKNGTPIDLPVYSYVDHTRT--QDTIHIEPKKVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 677
+R++++ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLREAMNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 30/193 (15%)
Query: 55 LREKKGGIVTVGIGGPSGSGK----TSLAEKLASVIGCTLISM----------------E 94
+ +K V +GI G S SGK ++L +L +G I + E
Sbjct: 1 MTDKSHQCVIIGIAGASASGKSLIASTLYRELRDQVGDEHIGVIPEDSYYKDQSHLSMEE 60
Query: 95 NYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVI 154
+ D N ++D L Q+LQ + G +P++ Y R I V+I
Sbjct: 61 RVKTNYDHPN---AMDHSLLFQHLQMIKNGTPIDLPVYSYVDHTR-TQDTIHIEPKKVII 116
Query: 155 VDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLF 208
++G L DARLR ++ + V + L+ +++ D+ + S+DS++ ++ P+F
Sbjct: 117 LEGILLLTDARLREAMNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMF 176
Query: 209 RKHIEPDLHHAQI 221
+ IEP +A I
Sbjct: 177 LQFIEPSKQYADI 189
>sp|A0KKF8|URK_AERHH Uridine kinase OS=Aeromonas hydrophila subsp. hydrophila (strain
ATCC 7966 / NCIB 9240) GN=udk PE=3 SV=1
Length = 214
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 95/193 (49%), Gaps = 30/193 (15%)
Query: 55 LREKKGGIVTVGIGGPSGSGKTSLA----EKLASVIGC---------------TLISMEN 95
+ + + V +GI G S SGK+ +A E+L + +G T ++ME
Sbjct: 1 MSDTQHSCVIIGIAGASASGKSLIAQTIYEELVAELGAGQIGVITEDCYYRDQTHLTMEE 60
Query: 96 -YRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVI 154
+ D N ++D D LVQ+L L +G IP + Y + R+ S+V A V+I
Sbjct: 61 RVKTNYDHPN---ALDHDLLVQHLSQLVQGDAVNIPQYSYTEHTRM-SEVTPFAPRRVII 116
Query: 155 VDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLF 208
++G L D+RLR L+D + + + L+ ++ D+ + ++DS++ ++ P+F
Sbjct: 117 LEGILLLTDSRLRDLMDASIFMDTPLDICLLRRLVRDVQERGRTMDSVLKQYQKTVRPMF 176
Query: 209 RKHIEPDLHHAQI 221
+ IEP +A +
Sbjct: 177 LQFIEPSKQYADV 189
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 78/177 (44%), Gaps = 20/177 (11%)
Query: 518 VIVGIGGPSGSGKTSLAHKMANIVGCE-------VVSLESYFK-------SEQVKDFKYD 563
VI+GI G S SGK+ +A + + E V++ + Y++ E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIAQTIYEELVAELGAGQIGVITEDCYYRDQTHLTMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
++LD LL +++S + G +P + R E+ VII EG+ L
Sbjct: 68 HPNALDHDLLVQHLSQLVQGDAVNIPQYSYTEHTR--MSEVTPFAPRRVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEP 677
+R +D I + + L+ R+ RD G M TV PMF Q IEP
Sbjct: 126 SRLRDLMDASIFMDTPLDICLLRRLVRDVQERGRTMDSVLKQYQKTVRPMFLQFIEP 182
>sp|Q7SYM0|UCK2A_DANRE Uridine-cytidine kinase 2-A OS=Danio rerio GN=uck2a PE=2 SV=1
Length = 261
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 23/182 (12%)
Query: 517 PVIVGIGGPSGSGKTSLAHKMANIVG----------CEVVSLESYF-------KSEQVK- 558
P ++G+ G + SGK+S+ K+ ++G ++S +S++ K++ +K
Sbjct: 22 PFLIGVAGGTASGKSSVCGKIMELLGQNKIDHHQRQVAILSQDSFYRVLTPEQKAKALKG 81
Query: 559 DFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGV 618
F +D + D L+ K + +I GR ++P++D T +R +E V++FEG+
Sbjct: 82 QFNFDHPDAFDNELIVKTLCEIMEGRTVQIPVYDFVTHSRK--EETVTVYPADVVLFEGI 139
Query: 619 YALHP-EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHI 675
+ EIR + + V + L RV RD S G + Q N + V P F++
Sbjct: 140 LMFYSQEIRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQVLNQYITFVKPAFEEFC 199
Query: 676 EP 677
P
Sbjct: 200 LP 201
Score = 36.6 bits (83), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 77/187 (41%), Gaps = 29/187 (15%)
Query: 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL------------------ 106
+G+ G + SGK+S+ K+ ++G I +V + +
Sbjct: 25 IGVAGGTASGKSSVCGKIMELLGQNKIDHHQRQVAILSQDSFYRVLTPEQKAKALKGQFN 84
Query: 107 ----DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD 162
D+ D + +V+ L ++ EG+ IP++D+ +R + + + VV+ +G
Sbjct: 85 FDHPDAFDNELIVKTLCEIMEGRTVQIPVYDFVTHSR-KEETVTVYPADVVLFEGILMFY 143
Query: 163 AR-LRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS-----LDSLIDSIFPLFRKHIEPDL 216
++ +R L +++ V L +V DI + L+ I + P F + P
Sbjct: 144 SQEIRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQVLNQYITFVKPAFEEFCLPTK 203
Query: 217 HHAQIRI 223
+A + I
Sbjct: 204 KYADVII 210
>sp|C6DCI6|URK_PECCP Uridine kinase OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=udk PE=3 SV=1
Length = 213
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 88/177 (49%), Gaps = 20/177 (11%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
VI+GI G S SGK+ +L ++ + VG + V+S +SY+K E+VK YD
Sbjct: 9 VIIGISGASASGKSLISSTLYRELRDQVGDQHIGVISEDSYYKDQSHLTMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
SS+D SLL K++ ++ G+ +VP + R +E E VII EG+ L
Sbjct: 68 HPSSMDHSLLLKHLQMLKAGQAIEVPQYSYVEHTRK--QETVHIELKKVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIEP 677
+R ++ I V + L+ R++RD + G M TV PMF Q IEP
Sbjct: 126 ARLRDEMNFSIFVDTPLDICLLRRMRRDVNERGRSMDSVMEQYQKTVRPMFLQFIEP 182
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 90/183 (49%), Gaps = 26/183 (14%)
Query: 63 VTVGIGGPSGSGK----TSLAEKLASVIG---CTLISMENY-----------RVGVDEGN 104
V +GI G S SGK ++L +L +G +IS ++Y RV + +
Sbjct: 9 VIIGISGASASGKSLISSTLYRELRDQVGDQHIGVISEDSYYKDQSHLTMEERVKTNYDH 68
Query: 105 DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DA 163
S+D L+++LQ L G+ +P + Y + R + + V+I++G L DA
Sbjct: 69 P-SSMDHSLLLKHLQMLKAGQAIEVPQYSYVEHTR-KQETVHIELKKVIILEGILLLTDA 126
Query: 164 RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLID----SIFPLFRKHIEPDLHH 218
RLR ++ + V + L+ +++ D+ + S+DS+++ ++ P+F + IEP +
Sbjct: 127 RLRDEMNFSIFVDTPLDICLLRRMRRDVNERGRSMDSVMEQYQKTVRPMFLQFIEPSKQY 186
Query: 219 AQI 221
A I
Sbjct: 187 ADI 189
>sp|B5RBW3|URK_SALG2 Uridine kinase OS=Salmonella gallinarum (strain 287/91 / NCTC
13346) GN=udk PE=3 SV=1
Length = 213
Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 89/178 (50%), Gaps = 22/178 (12%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFKS------EQVKDFKYDD 564
VI+GI G S SGK+ +L ++ VG E V+ +SY+K E++ YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEELVKTNYDH 68
Query: 565 FSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HP 623
+++D SLL +++ ++ G ++P++ R +E E VII EG+ L
Sbjct: 69 PNAMDHSLLFQHLQALKRGSAIELPVYSYVEHTR--MQETVRVEPKKVIILEGILLLTDA 126
Query: 624 EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 677
+R+ ++ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 127 RLREEMNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 87/185 (47%), Gaps = 30/185 (16%)
Query: 63 VTVGIGGPSGSGKTSLAEKLA---------SVIGC----------TLISMENY-RVGVDE 102
V +GI G S SGK+ +A L IG + +SME + D
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEELVKTNYDH 68
Query: 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL- 161
N ++D L Q+LQ L G +P++ Y + R+ + ++ V+I++G L
Sbjct: 69 PN---AMDHSLLFQHLQALKRGSAIELPVYSYVEHTRM-QETVRVEPKKVIILEGILLLT 124
Query: 162 DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDL 216
DARLR ++ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP
Sbjct: 125 DARLREEMNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSK 184
Query: 217 HHAQI 221
+A I
Sbjct: 185 QYADI 189
>sp|Q4L6V8|URK_STAHJ Uridine kinase OS=Staphylococcus haemolyticus (strain JCSC1435)
GN=udk PE=3 SV=1
Length = 207
Score = 60.1 bits (144), Expect = 7e-08, Method: Composition-based stats.
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 530 KTSLAHK-MANIVGCEVVSL--------ESYFKSEQVKDFKYDDFSSLDLSLLSKNISDI 580
KT++ ++ M N+ G V L +S+ E+ + YD + D LL +N+ D+
Sbjct: 17 KTTVTNEIMKNLEGHSVALLAQDYYYKDQSHLTFEERLETNYDHPFAFDNDLLIENLKDL 76
Query: 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGV 639
RNG +VP +D RS E E VII EG++AL + +R +D+ I V
Sbjct: 77 RNGHAVEVPTYDYTNHTRS--NETIAFEPKDVIIVEGIFALENKTLRDMMDVKIYVDTDA 134
Query: 640 HSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKI 686
++ R+ RD G M N + V PM Q IEP +A + I
Sbjct: 135 DLRILRRLVRDTKERGRSMESVINQYLNVVKPMHNQFIEPTKKYADIII 183
Score = 53.1 bits (126), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 108 SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR-LR 166
+ D D L++NL+DL G +P +DY R ++ I V+IV+G +AL+ + LR
Sbjct: 63 AFDNDLLIENLKDLRNGHAVEVPTYDYTNHTR-SNETIAFEPKDVIIVEGIFALENKTLR 121
Query: 167 SLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDS----IFPLFRKHIEPDLHHAQI 221
++D+++ V ++ ++ D + S++S+I+ + P+ + IEP +A I
Sbjct: 122 DMMDVKIYVDTDADLRILRRLVRDTKERGRSMESVINQYLNVVKPMHNQFIEPTKKYADI 181
Query: 222 RI 223
I
Sbjct: 182 II 183
>sp|B7LV30|URK_ESCF3 Uridine kinase OS=Escherichia fergusonii (strain ATCC 35469 / DSM
13698 / CDC 0568-73) GN=udk PE=3 SV=1
Length = 213
Score = 60.1 bits (144), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 24/179 (13%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
VI+GI G S SGK+ +L ++ VG E V+ + Y+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
S++D SLL +++ ++ G +P++ R KE E VII EG+ L
Sbjct: 68 HPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR--MKETVKVEPKKVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 677
+R L+ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 53.1 bits (126), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 91/184 (49%), Gaps = 28/184 (15%)
Query: 63 VTVGIGGPSGSGKT----SLAEKLASVIG----------C-----TLISMENYRVGVDEG 103
V +GI G S SGK+ +L +L +G C + +SME RV +
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDCYYKDQSHLSMEE-RVKTNYD 67
Query: 104 NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-D 162
+ ++D L+++LQ L G +P++ Y + R+ + +K V+I++G L D
Sbjct: 68 HP-SAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTRM-KETVKVEPKKVIILEGILLLTD 125
Query: 163 ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDLH 217
ARLR L+ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP
Sbjct: 126 ARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQ 185
Query: 218 HAQI 221
+A I
Sbjct: 186 YADI 189
>sp|Q9HQC9|URK_HALSA Uridine kinase OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=udk PE=3 SV=2
Length = 225
Score = 59.7 bits (143), Expect = 9e-08, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 13/168 (7%)
Query: 530 KTSLAHKMANIVG--CEVVSLESYFKS------EQVKDFKYDDFSSLDLSLLSKNISDIR 581
KT++A ++ + VG ++ L++Y++ E+ + YD S+ + LL +I +
Sbjct: 18 KTTVAREITDNVGESATLIPLDNYYEDLSDRPFEERANANYDHPSAFEWELLRTHIDALL 77
Query: 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-IRKSLDLWIAVVGGVH 640
+G+ ++P +D E R + V E VI+ EG+ AL E + LDL I V
Sbjct: 78 SGQSIEMPQYDFERHVRKA--DRVVVEPTDVIVLEGILALSDETVNDMLDLHIYVETDAD 135
Query: 641 SHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIEPHLVHAHLKI 686
++ R++RD G + + + TV PM +Q IEP HA + I
Sbjct: 136 VRILRRIERDVVERGRELEGVMDQYLSTVKPMHEQFIEPTKRHADIII 183
Score = 44.7 bits (104), Expect = 0.003, Method: Composition-based stats.
Identities = 34/167 (20%), Positives = 80/167 (47%), Gaps = 19/167 (11%)
Query: 75 KTSLAEKLASVIG--CTLISMENYRVGVDEG----------NDLDSIDFDALVQNLQDLT 122
KT++A ++ +G TLI ++NY + + + + +++ L ++ L
Sbjct: 18 KTTVAREITDNVGESATLIPLDNYYEDLSDRPFEERANANYDHPSAFEWELLRTHIDALL 77
Query: 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHF 181
G+ +P +D+++ R +V+ + V++++G AL D + +LD+ + V
Sbjct: 78 SGQSIEMPQYDFERHVRKADRVVV-EPTDVIVLEGILALSDETVNDMLDLHIYVETDADV 136
Query: 182 SLISKVQYDIGDSCS-----LDSLIDSIFPLFRKHIEPDLHHAQIRI 223
++ +++ D+ + +D + ++ P+ + IEP HA I I
Sbjct: 137 RILRRIERDVVERGRELEGVMDQYLSTVKPMHEQFIEPTKRHADIII 183
>sp|P67408|URK_SALTY Uridine kinase OS=Salmonella typhimurium (strain LT2 / SGSC1412 /
ATCC 700720) GN=udk PE=3 SV=1
Length = 213
Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
Query: 518 VIVGIGGPSGSGKT----SLAHKMANIVGCE---VVSLESYFK-------SEQVKDFKYD 563
VI+GI G S SGK+ +L ++ VG E V+ +SY+K E+VK YD
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKT-NYD 67
Query: 564 DFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-H 622
+++D SLL +++ ++ G ++P++ R +E E VII EG+ L
Sbjct: 68 HPNAMDHSLLFQHLQALKRGSAIELPVYSYVEHTR--MQETVRVEPKKVIILEGILLLTD 125
Query: 623 PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMM----TVFPMFQQHIEP 677
+R+ ++ I V + L+ R++RD + G S + +M TV PMF Q IEP
Sbjct: 126 ARLREEMNFSIFVDTPLDICLMRRIKRDVNERG--RSMDSVMAQYQKTVRPMFLQFIEP 182
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 30/185 (16%)
Query: 63 VTVGIGGPSGSGKT----SLAEKLASVIGCTLISM----------------ENYRVGVDE 102
V +GI G S SGK+ +L +L +G I + E + D
Sbjct: 9 VIIGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKTNYDH 68
Query: 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL- 161
N ++D L Q+LQ L G +P++ Y + R+ + ++ V+I++G L
Sbjct: 69 PN---AMDHSLLFQHLQALKRGSAIELPVYSYVEHTRM-QETVRVEPKKVIILEGILLLT 124
Query: 162 DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLI----DSIFPLFRKHIEPDL 216
DARLR ++ + V + L+ +++ D+ + S+DS++ ++ P+F + IEP
Sbjct: 125 DARLREEMNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSK 184
Query: 217 HHAQI 221
+A I
Sbjct: 185 QYADI 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,418,508
Number of Sequences: 539616
Number of extensions: 13171170
Number of successful extensions: 56669
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 292
Number of HSP's that attempted gapping in prelim test: 55361
Number of HSP's gapped (non-prelim): 1115
length of query: 818
length of database: 191,569,459
effective HSP length: 126
effective length of query: 692
effective length of database: 123,577,843
effective search space: 85515867356
effective search space used: 85515867356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)