Query 003460
Match_columns 818
No_of_seqs 712 out of 3595
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 23:50:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 3.4E-62 7.4E-67 550.9 22.1 331 482-817 30-363 (656)
2 PLN02318 phosphoribulokinase/u 100.0 8.8E-60 1.9E-64 531.4 30.4 366 28-399 31-414 (656)
3 COG0572 Udk Uridine kinase [Nu 100.0 1.9E-34 4.2E-39 292.4 14.0 174 515-690 6-191 (218)
4 COG1437 CyaB Adenylate cyclase 100.0 1.7E-31 3.7E-36 260.1 14.8 142 247-397 21-177 (178)
5 KOG2878 Predicted kinase [Gene 100.0 2E-32 4.4E-37 267.5 6.2 222 516-764 30-280 (282)
6 PTZ00301 uridine kinase; Provi 100.0 3.1E-30 6.6E-35 265.5 15.3 172 517-690 3-190 (210)
7 PF00485 PRK: Phosphoribulokin 100.0 1.4E-29 3.1E-34 258.5 12.7 170 519-690 1-189 (194)
8 PLN03046 D-glycerate 3-kinase; 100.0 1.8E-29 3.8E-34 276.3 9.5 232 501-763 191-457 (460)
9 PLN02348 phosphoribulokinase 100.0 2.5E-28 5.3E-33 267.9 18.1 232 509-758 41-305 (395)
10 PLN02796 D-glycerate 3-kinase 100.0 3.5E-29 7.6E-34 271.2 10.1 217 515-762 98-344 (347)
11 PRK05439 pantothenate kinase; 100.0 6.7E-28 1.4E-32 260.1 14.4 239 455-694 12-303 (311)
12 COG0572 Udk Uridine kinase [Nu 99.9 2E-27 4.4E-32 241.3 14.2 167 60-227 6-191 (218)
13 TIGR00318 cyaB adenylyl cyclas 99.9 6E-27 1.3E-31 234.8 15.7 138 249-395 23-173 (174)
14 cd02029 PRK_like Phosphoribulo 99.9 3.3E-27 7.1E-32 246.7 13.1 166 519-688 1-201 (277)
15 COG4240 Predicted kinase [Gene 99.9 2.8E-27 6.1E-32 236.1 5.2 223 512-760 45-292 (300)
16 TIGR00554 panK_bact pantothena 99.9 4.5E-26 9.7E-31 244.5 14.2 180 514-694 59-283 (290)
17 cd02028 UMPK_like Uridine mono 99.9 5.4E-26 1.2E-30 229.2 12.6 168 519-687 1-178 (179)
18 cd02025 PanK Pantothenate kina 99.9 1.6E-25 3.5E-30 232.8 12.7 173 519-692 1-213 (220)
19 PRK15453 phosphoribulokinase; 99.9 3.4E-25 7.3E-30 233.4 15.0 173 515-688 3-207 (290)
20 PTZ00301 uridine kinase; Provi 99.9 8E-25 1.7E-29 225.4 14.7 166 62-228 3-191 (210)
21 PRK05480 uridine/cytidine kina 99.9 1.8E-24 3.9E-29 223.4 15.3 175 514-690 3-189 (209)
22 PF00485 PRK: Phosphoribulokin 99.9 4E-24 8.6E-29 218.4 13.4 163 64-227 1-189 (194)
23 PRK05439 pantothenate kinase; 99.9 9.8E-24 2.1E-28 227.8 16.7 199 32-230 37-302 (311)
24 PRK07429 phosphoribulokinase; 99.9 1.8E-23 3.9E-28 228.6 16.6 209 513-739 4-222 (327)
25 TIGR00554 panK_bact pantothena 99.9 1.3E-22 2.8E-27 217.8 17.4 196 32-227 13-279 (290)
26 TIGR00235 udk uridine kinase. 99.9 1.1E-22 2.5E-27 209.8 15.8 175 514-690 3-189 (207)
27 cd02023 UMPK Uridine monophosp 99.9 1E-22 2.2E-27 208.4 14.3 172 519-692 1-184 (198)
28 cd02026 PRK Phosphoribulokinas 99.9 2E-22 4.4E-27 215.8 14.7 168 519-689 1-177 (273)
29 PLN02348 phosphoribulokinase 99.9 4.9E-22 1.1E-26 218.4 17.2 177 48-226 35-244 (395)
30 PRK06696 uridine kinase; Valid 99.9 7.1E-22 1.5E-26 206.2 16.7 177 513-690 18-211 (223)
31 cd07890 CYTH-like_AC_IV-like A 99.9 5.8E-22 1.2E-26 198.1 14.1 134 251-393 23-169 (169)
32 cd02029 PRK_like Phosphoribulo 99.9 1.3E-21 2.8E-26 204.8 13.6 161 64-225 1-201 (277)
33 cd02028 UMPK_like Uridine mono 99.9 1.2E-21 2.6E-26 197.6 12.3 161 64-224 1-178 (179)
34 cd02024 NRK1 Nicotinamide ribo 99.9 1.7E-21 3.7E-26 196.8 12.1 156 519-674 1-179 (187)
35 cd02025 PanK Pantothenate kina 99.9 3.8E-21 8.1E-26 200.1 13.7 165 64-228 1-212 (220)
36 PRK05480 uridine/cytidine kina 99.8 1.4E-20 3E-25 194.4 15.3 167 60-227 4-189 (209)
37 PRK07667 uridine kinase; Provi 99.8 2.6E-20 5.7E-25 190.1 14.7 170 509-687 9-193 (193)
38 PRK15453 phosphoribulokinase; 99.8 6.4E-20 1.4E-24 193.6 15.1 164 60-224 3-206 (290)
39 COG1072 CoaA Panthothenate kin 99.8 5.3E-20 1.1E-24 191.3 12.8 201 455-656 8-238 (283)
40 PRK06696 uridine kinase; Valid 99.8 2.1E-19 4.5E-24 187.6 17.4 170 58-227 18-211 (223)
41 PRK09270 nucleoside triphospha 99.8 2.6E-19 5.7E-24 187.7 17.1 183 505-690 21-222 (229)
42 cd02023 UMPK Uridine monophosp 99.8 1.4E-19 3.1E-24 185.2 14.4 164 64-228 1-183 (198)
43 TIGR00235 udk uridine kinase. 99.8 4.4E-19 9.6E-24 183.1 14.7 168 59-227 3-189 (207)
44 PRK07667 uridine kinase; Provi 99.8 4.8E-19 1E-23 180.8 13.7 168 53-224 8-193 (193)
45 PRK07429 phosphoribulokinase; 99.8 5E-19 1.1E-23 193.8 14.4 166 59-226 5-186 (327)
46 COG1072 CoaA Panthothenate kin 99.8 7.7E-19 1.7E-23 182.7 13.9 165 32-196 33-238 (283)
47 PRK09270 nucleoside triphospha 99.8 6.9E-18 1.5E-22 176.9 17.8 183 44-227 15-222 (229)
48 cd02026 PRK Phosphoribulokinas 99.8 1.8E-18 3.9E-23 185.5 13.6 161 64-226 1-177 (273)
49 cd02024 NRK1 Nicotinamide ribo 99.8 1.1E-18 2.4E-23 176.3 11.0 147 64-210 1-178 (187)
50 PRK06547 hypothetical protein; 99.8 9.7E-18 2.1E-22 167.8 16.3 153 514-687 12-171 (172)
51 PRK06547 hypothetical protein; 99.8 1.8E-17 3.9E-22 165.9 15.9 153 59-224 12-171 (172)
52 KOG4203 Armadillo/beta-Catenin 99.7 4.4E-18 9.6E-23 193.7 8.0 175 514-689 41-236 (473)
53 PF01121 CoaE: Dephospho-CoA k 99.7 4.7E-17 1E-21 163.9 8.2 155 63-227 1-176 (180)
54 cd02022 DPCK Dephospho-coenzym 99.6 4.9E-16 1.1E-20 156.8 9.2 154 64-227 1-175 (179)
55 PRK14733 coaE dephospho-CoA ki 99.6 1.2E-15 2.7E-20 156.2 10.7 157 61-227 5-182 (204)
56 PRK14730 coaE dephospho-CoA ki 99.6 1.1E-15 2.3E-20 156.4 9.8 156 63-227 2-179 (195)
57 PTZ00451 dephospho-CoA kinase; 99.6 1.3E-15 2.9E-20 160.1 10.5 160 62-226 1-189 (244)
58 PRK00081 coaE dephospho-CoA ki 99.6 2.5E-15 5.3E-20 153.7 9.8 156 62-227 2-178 (194)
59 PF01928 CYTH: CYTH domain; I 99.6 4.2E-15 9E-20 150.5 11.4 140 249-395 25-184 (185)
60 cd07762 CYTH-like_Pase_1 Uncha 99.6 6.2E-15 1.3E-19 148.6 12.1 119 255-385 25-171 (180)
61 cd07758 ThTPase Thiamine Triph 99.6 8.6E-15 1.9E-19 149.6 12.0 123 252-385 25-181 (196)
62 KOG3220 Similar to bacterial d 99.6 4.7E-15 1E-19 146.9 8.4 159 62-228 1-180 (225)
63 PLN02422 dephospho-CoA kinase 99.6 6.5E-15 1.4E-19 153.5 9.1 158 62-227 1-179 (232)
64 PRK14734 coaE dephospho-CoA ki 99.6 1.1E-14 2.3E-19 149.6 10.1 158 62-227 1-179 (200)
65 PRK08233 hypothetical protein; 99.5 6.4E-14 1.4E-18 140.9 13.0 150 516-689 2-161 (182)
66 KOG3308 Uncharacterized protei 99.5 2.2E-14 4.7E-19 142.3 8.0 160 516-679 3-175 (225)
67 PRK14731 coaE dephospho-CoA ki 99.5 4.1E-14 8.9E-19 146.3 10.5 160 60-227 3-187 (208)
68 PRK14732 coaE dephospho-CoA ki 99.5 2.1E-14 4.5E-19 146.9 8.1 154 64-227 1-175 (196)
69 COG0237 CoaE Dephospho-CoA kin 99.5 2.2E-14 4.7E-19 146.6 8.0 156 62-228 2-178 (201)
70 PRK03333 coaE dephospho-CoA ki 99.5 5E-14 1.1E-18 158.9 11.4 157 62-228 1-178 (395)
71 KOG2702 Predicted panthothenat 99.5 5.6E-14 1.2E-18 141.3 9.7 171 28-203 89-295 (323)
72 PRK08233 hypothetical protein; 99.5 2.8E-13 6.1E-18 136.2 13.7 142 62-226 3-161 (182)
73 KOG3308 Uncharacterized protei 99.5 6E-14 1.3E-18 139.1 8.2 166 61-230 3-191 (225)
74 TIGR00152 dephospho-CoA kinase 99.5 1.5E-13 3.2E-18 139.7 8.9 156 64-227 1-177 (188)
75 PLN03046 D-glycerate 3-kinase; 99.4 4E-13 8.6E-18 148.4 11.0 170 43-212 184-429 (460)
76 cd02022 DPCK Dephospho-coenzym 99.4 2.8E-13 6.1E-18 136.7 7.6 158 519-691 1-176 (179)
77 PF01121 CoaE: Dephospho-CoA k 99.4 1.9E-13 4.1E-18 137.8 5.5 158 518-690 1-176 (180)
78 PLN02796 D-glycerate 3-kinase 99.4 4E-12 8.6E-17 138.8 13.1 153 60-212 98-317 (347)
79 KOG2702 Predicted panthothenat 99.4 2.4E-12 5.2E-17 129.7 10.2 139 514-653 116-283 (323)
80 PRK14733 coaE dephospho-CoA ki 99.4 1.7E-12 3.6E-17 133.2 9.1 161 514-690 3-182 (204)
81 PRK14730 coaE dephospho-CoA ki 99.3 1.5E-12 3.2E-17 133.3 8.0 160 518-691 2-180 (195)
82 PRK00081 coaE dephospho-CoA ki 99.3 2.6E-12 5.5E-17 131.5 8.2 159 517-690 2-178 (194)
83 KOG4203 Armadillo/beta-Catenin 99.3 2.5E-12 5.3E-17 147.0 7.1 167 60-226 42-236 (473)
84 COG1102 Cmk Cytidylate kinase 99.3 7.6E-12 1.6E-16 120.6 8.8 146 63-227 1-156 (179)
85 PRK14734 coaE dephospho-CoA ki 99.3 7.3E-12 1.6E-16 128.7 8.5 161 518-691 2-180 (200)
86 PLN02422 dephospho-CoA kinase 99.2 1.4E-11 3E-16 128.6 8.4 161 518-691 2-180 (232)
87 PRK14732 coaE dephospho-CoA ki 99.2 1.4E-11 3.1E-16 126.0 7.3 158 519-691 1-176 (196)
88 PTZ00451 dephospho-CoA kinase; 99.2 2.3E-11 4.9E-16 128.2 8.6 163 518-689 2-189 (244)
89 COG0283 Cmk Cytidylate kinase 99.2 1.9E-10 4E-15 116.6 11.9 173 62-235 4-210 (222)
90 PRK01184 hypothetical protein; 99.2 1.6E-10 3.4E-15 117.0 10.7 154 62-227 1-163 (184)
91 PRK14731 coaE dephospho-CoA ki 99.1 9.6E-11 2.1E-15 121.2 9.1 163 515-690 3-187 (208)
92 COG0237 CoaE Dephospho-CoA kin 99.1 5E-11 1.1E-15 122.0 6.5 160 517-692 2-179 (201)
93 cd02020 CMPK Cytidine monophos 99.1 1.5E-10 3.2E-15 112.0 9.4 139 64-225 1-146 (147)
94 TIGR00152 dephospho-CoA kinase 99.1 7.5E-11 1.6E-15 119.9 7.6 160 519-691 1-178 (188)
95 PF13207 AAA_17: AAA domain; P 99.1 8.8E-11 1.9E-15 110.1 6.4 116 519-658 1-119 (121)
96 COG4240 Predicted kinase [Gene 99.1 3.4E-10 7.5E-15 114.4 9.9 107 56-162 44-175 (300)
97 PRK06217 hypothetical protein; 99.1 6.9E-10 1.5E-14 112.4 11.8 106 62-192 1-107 (183)
98 TIGR00017 cmk cytidylate kinas 99.1 9.2E-10 2E-14 114.5 12.6 166 63-234 3-209 (217)
99 cd02020 CMPK Cytidine monophos 99.1 6.3E-10 1.4E-14 107.6 10.2 142 519-688 1-146 (147)
100 COG1102 Cmk Cytidylate kinase 99.0 2.6E-10 5.5E-15 110.2 6.2 114 518-652 1-114 (179)
101 PRK04182 cytidylate kinase; Pr 99.0 4.5E-10 9.8E-15 112.6 8.1 149 64-227 2-157 (180)
102 PRK06217 hypothetical protein; 99.0 7.5E-10 1.6E-14 112.1 9.6 105 519-653 3-108 (183)
103 TIGR02173 cyt_kin_arch cytidyl 99.0 6.6E-10 1.4E-14 110.5 8.9 155 63-233 1-162 (171)
104 PRK13477 bifunctional pantoate 99.0 1.1E-09 2.4E-14 126.2 11.5 171 61-233 283-492 (512)
105 KOG3220 Similar to bacterial d 99.0 4.8E-10 1E-14 111.7 7.1 164 518-693 2-182 (225)
106 PRK13477 bifunctional pantoate 99.0 4.4E-10 9.5E-15 129.5 7.1 132 516-650 283-442 (512)
107 PF13207 AAA_17: AAA domain; P 99.0 1.1E-09 2.4E-14 102.6 7.6 104 64-190 1-111 (121)
108 PRK08118 topology modulation p 99.0 3.3E-09 7.1E-14 106.0 11.2 100 62-191 1-101 (167)
109 PRK03333 coaE dephospho-CoA ki 99.0 1.1E-09 2.3E-14 123.9 8.2 159 518-691 2-178 (395)
110 PRK11860 bifunctional 3-phosph 99.0 3E-09 6.5E-14 128.0 12.1 188 44-236 423-647 (661)
111 PRK06762 hypothetical protein; 98.9 1.2E-08 2.5E-13 101.5 13.5 134 62-226 2-147 (166)
112 cd07756 CYTH-like_Pase_CHAD Un 98.9 3.6E-09 7.8E-14 108.3 10.0 126 256-388 32-190 (197)
113 PRK07261 topology modulation p 98.9 6.5E-09 1.4E-13 104.2 10.7 99 64-192 2-102 (171)
114 PRK00023 cmk cytidylate kinase 98.9 4.8E-09 1E-13 109.9 9.9 172 62-235 4-212 (225)
115 PRK08118 topology modulation p 98.9 4.5E-09 9.8E-14 105.0 9.0 103 519-656 3-106 (167)
116 PRK07261 topology modulation p 98.9 5.3E-09 1.1E-13 104.9 9.0 105 519-658 2-108 (171)
117 PRK09518 bifunctional cytidyla 98.9 1.4E-08 3.1E-13 123.3 14.0 173 63-240 2-227 (712)
118 cd07891 CYTH-like_CthTTM-like_ 98.9 9.7E-09 2.1E-13 100.3 9.7 85 273-371 32-121 (148)
119 TIGR02173 cyt_kin_arch cytidyl 98.8 1E-08 2.2E-13 101.9 9.0 114 518-651 1-114 (171)
120 PRK08356 hypothetical protein; 98.8 2.4E-08 5.2E-13 102.2 11.4 152 61-226 4-176 (195)
121 KOG2878 Predicted kinase [Gene 98.8 2.2E-08 4.7E-13 99.6 9.3 101 62-162 31-164 (282)
122 cd07374 CYTH-like_Pase CYTH-li 98.8 2.3E-08 5.1E-13 100.4 9.5 101 254-368 29-157 (174)
123 PRK01184 hypothetical protein; 98.8 2E-08 4.3E-13 101.6 8.9 155 518-690 2-163 (184)
124 PRK13949 shikimate kinase; Pro 98.8 2.4E-08 5.2E-13 100.0 9.1 142 63-227 2-155 (169)
125 PRK00131 aroK shikimate kinase 98.7 1.1E-08 2.4E-13 101.8 5.8 40 60-99 2-41 (175)
126 PLN02200 adenylate kinase fami 98.7 4.3E-08 9.2E-13 103.3 10.2 121 60-191 41-168 (234)
127 PRK04182 cytidylate kinase; Pr 98.7 2.9E-08 6.2E-13 99.5 8.3 112 519-650 2-113 (180)
128 PRK00023 cmk cytidylate kinase 98.7 1.9E-08 4E-13 105.4 7.1 132 517-650 4-161 (225)
129 PRK03839 putative kinase; Prov 98.7 1.2E-07 2.6E-12 95.6 11.7 97 64-190 2-101 (180)
130 PRK00625 shikimate kinase; Pro 98.7 6.4E-08 1.4E-12 97.2 9.6 141 64-226 2-150 (173)
131 PRK05541 adenylylsulfate kinas 98.7 5E-08 1.1E-12 98.0 8.7 137 60-227 5-155 (176)
132 TIGR00017 cmk cytidylate kinas 98.7 4.1E-08 8.8E-13 102.2 7.1 127 517-652 2-161 (217)
133 cd07761 CYTH-like_CthTTM-like 98.6 9.9E-08 2.1E-12 93.1 8.9 81 275-370 32-118 (146)
134 PRK06762 hypothetical protein; 98.6 1.5E-07 3.2E-12 93.6 10.2 106 517-651 2-118 (166)
135 COG3954 PrkB Phosphoribulokina 98.6 1.6E-07 3.5E-12 92.7 10.1 168 517-687 5-206 (289)
136 PRK04040 adenylate kinase; Pro 98.6 1.9E-07 4.1E-12 95.2 10.4 152 62-227 2-173 (188)
137 PRK05057 aroK shikimate kinase 98.6 3.6E-07 7.9E-12 91.7 11.9 141 62-227 4-155 (172)
138 TIGR01359 UMP_CMP_kin_fam UMP- 98.6 2.6E-07 5.7E-12 93.1 10.6 117 64-191 1-126 (183)
139 cd00464 SK Shikimate kinase (S 98.6 1.6E-07 3.4E-12 91.7 8.0 137 65-226 2-148 (154)
140 PRK00131 aroK shikimate kinase 98.5 1.2E-07 2.6E-12 94.3 6.8 38 516-553 3-40 (175)
141 PRK14737 gmk guanylate kinase; 98.5 5.1E-07 1.1E-11 91.8 10.9 157 60-226 2-169 (186)
142 PRK08356 hypothetical protein; 98.5 4.2E-07 9.1E-12 93.1 10.2 123 516-651 4-137 (195)
143 cd02021 GntK Gluconate kinase 98.5 8.6E-07 1.9E-11 86.5 11.9 36 64-99 1-36 (150)
144 PRK14528 adenylate kinase; Pro 98.5 5.3E-07 1.1E-11 91.7 10.3 140 62-212 1-153 (186)
145 TIGR01360 aden_kin_iso1 adenyl 98.5 1.1E-06 2.4E-11 88.7 12.6 119 62-191 3-129 (188)
146 PRK12269 bifunctional cytidyla 98.5 3E-07 6.5E-12 112.2 9.9 175 63-239 35-280 (863)
147 PRK04040 adenylate kinase; Pro 98.5 1.8E-07 4E-12 95.2 6.8 38 517-554 2-41 (188)
148 cd01428 ADK Adenylate kinase ( 98.5 4.2E-07 9.2E-12 92.3 9.4 117 65-191 2-127 (194)
149 PRK14527 adenylate kinase; Pro 98.5 6E-07 1.3E-11 91.6 10.5 142 60-213 4-158 (191)
150 PRK03839 putative kinase; Prov 98.5 5.3E-07 1.2E-11 90.9 9.7 100 519-650 2-101 (180)
151 PRK13946 shikimate kinase; Pro 98.5 3.7E-07 8E-12 92.6 8.2 113 61-191 9-125 (184)
152 PF13671 AAA_33: AAA domain; P 98.5 1.6E-07 3.5E-12 90.4 5.3 114 64-194 1-123 (143)
153 PLN02200 adenylate kinase fami 98.5 5.6E-07 1.2E-11 94.9 9.6 121 515-651 41-168 (234)
154 COG0703 AroK Shikimate kinase 98.5 2E-07 4.3E-12 92.4 5.8 138 63-229 3-155 (172)
155 COG0283 Cmk Cytidylate kinase 98.5 3.4E-07 7.4E-12 93.1 7.6 134 517-652 4-161 (222)
156 COG1936 Predicted nucleotide k 98.5 1E-06 2.2E-11 86.7 10.4 98 63-190 1-104 (180)
157 PRK10078 ribose 1,5-bisphospho 98.4 1.4E-06 3.1E-11 88.4 11.4 122 63-190 3-132 (186)
158 TIGR01359 UMP_CMP_kin_fam UMP- 98.4 7.2E-07 1.6E-11 89.9 9.2 117 519-651 1-126 (183)
159 PRK03731 aroL shikimate kinase 98.4 6.3E-07 1.4E-11 89.5 8.5 135 63-226 3-154 (171)
160 PRK14531 adenylate kinase; Pro 98.4 1.2E-06 2.6E-11 88.7 10.4 117 63-191 3-130 (183)
161 PRK13947 shikimate kinase; Pro 98.4 9.5E-07 2.1E-11 88.1 9.4 37 63-99 2-38 (171)
162 PRK02496 adk adenylate kinase; 98.4 7.3E-07 1.6E-11 90.2 8.6 137 62-210 1-147 (184)
163 cd02019 NK Nucleoside/nucleoti 98.4 5.8E-07 1.3E-11 76.2 6.4 56 64-177 1-63 (69)
164 PRK00625 shikimate kinase; Pro 98.4 8.8E-07 1.9E-11 89.0 8.8 137 519-689 2-150 (173)
165 PF13238 AAA_18: AAA domain; P 98.4 1.1E-07 2.3E-12 89.5 2.0 109 65-193 1-116 (129)
166 PRK14530 adenylate kinase; Pro 98.4 1.5E-06 3.2E-11 90.4 10.3 116 64-190 5-127 (215)
167 PRK08154 anaerobic benzoate ca 98.4 1.7E-06 3.6E-11 95.1 10.9 144 58-227 129-285 (309)
168 PRK13948 shikimate kinase; Pro 98.4 1.9E-06 4.1E-11 87.3 10.5 40 60-99 8-47 (182)
169 PRK05541 adenylylsulfate kinas 98.4 9.9E-07 2.1E-11 88.6 8.3 39 514-552 4-47 (176)
170 PRK14532 adenylate kinase; Pro 98.4 2.6E-06 5.7E-11 86.4 11.5 116 64-190 2-128 (188)
171 PF13238 AAA_18: AAA domain; P 98.3 3.5E-07 7.6E-12 86.0 4.0 110 520-652 1-115 (129)
172 PRK00279 adk adenylate kinase; 98.3 2E-06 4.4E-11 89.4 10.0 116 64-190 2-128 (215)
173 PRK13949 shikimate kinase; Pro 98.3 1.6E-06 3.6E-11 86.8 8.7 141 519-689 3-154 (169)
174 PRK08154 anaerobic benzoate ca 98.3 1.3E-06 2.8E-11 96.0 8.5 41 513-553 129-169 (309)
175 TIGR02322 phosphon_PhnN phosph 98.3 5.2E-06 1.1E-10 83.5 12.2 122 63-190 2-132 (179)
176 PRK09518 bifunctional cytidyla 98.3 1.6E-06 3.6E-11 105.5 9.5 164 518-689 2-214 (712)
177 TIGR01351 adk adenylate kinase 98.3 2.1E-06 4.6E-11 88.9 8.8 116 65-190 2-125 (210)
178 cd02019 NK Nucleoside/nucleoti 98.3 1.1E-06 2.3E-11 74.6 5.3 26 612-637 34-63 (69)
179 TIGR01360 aden_kin_iso1 adenyl 98.3 4.1E-06 8.8E-11 84.6 10.4 117 517-651 3-129 (188)
180 PF01583 APS_kinase: Adenylyls 98.3 1.7E-06 3.8E-11 85.0 7.3 104 61-185 1-116 (156)
181 PRK03846 adenylylsulfate kinas 98.3 5.1E-06 1.1E-10 85.3 11.1 41 59-99 21-66 (198)
182 PRK14527 adenylate kinase; Pro 98.3 4.6E-06 1E-10 85.0 10.6 120 515-651 4-134 (191)
183 COG0324 MiaA tRNA delta(2)-iso 98.3 1E-07 2.2E-12 102.9 -1.6 172 61-255 2-180 (308)
184 cd00464 SK Shikimate kinase (S 98.3 2.6E-06 5.6E-11 83.1 8.2 35 520-554 2-36 (154)
185 PLN02199 shikimate kinase 98.3 6.1E-06 1.3E-10 88.7 11.6 58 40-100 83-140 (303)
186 TIGR01313 therm_gnt_kin carboh 98.3 8E-06 1.7E-10 80.8 11.7 34 65-98 1-34 (163)
187 PTZ00088 adenylate kinase 1; P 98.2 4.7E-06 1E-10 87.5 10.2 122 61-191 5-132 (229)
188 TIGR03263 guanyl_kin guanylate 98.2 4.4E-06 9.6E-11 84.0 9.7 28 63-90 2-29 (180)
189 PRK00091 miaA tRNA delta(2)-is 98.2 2E-07 4.4E-12 101.7 -0.2 42 61-102 3-46 (307)
190 TIGR00455 apsK adenylylsulfate 98.2 1.1E-05 2.3E-10 81.7 12.0 105 60-185 16-132 (184)
191 cd00227 CPT Chloramphenicol (C 98.2 8.8E-06 1.9E-10 81.8 11.0 37 63-99 3-41 (175)
192 COG1428 Deoxynucleoside kinase 98.2 1.9E-06 4E-11 87.6 5.9 64 628-696 126-196 (216)
193 PRK13808 adenylate kinase; Pro 98.2 3.7E-06 8E-11 92.3 8.6 115 64-189 2-127 (333)
194 PRK14737 gmk guanylate kinase; 98.2 6.6E-06 1.4E-10 83.7 9.8 161 516-689 3-169 (186)
195 cd01428 ADK Adenylate kinase ( 98.2 3.2E-06 7E-11 85.8 7.5 117 520-651 2-127 (194)
196 COG0529 CysC Adenylylsulfate k 98.2 8.5E-06 1.8E-10 80.4 9.7 46 58-103 19-69 (197)
197 PRK14528 adenylate kinase; Pro 98.2 9E-06 1.9E-10 82.7 10.2 118 519-651 3-130 (186)
198 PRK14729 miaA tRNA delta(2)-is 98.2 3.3E-07 7.1E-12 99.4 -0.3 172 62-254 4-179 (300)
199 PHA02530 pseT polynucleotide k 98.2 6.6E-06 1.4E-10 89.8 9.8 39 62-100 2-41 (300)
200 PLN02165 adenylate isopentenyl 98.2 2.9E-06 6.2E-11 92.9 6.9 44 60-103 41-86 (334)
201 COG0563 Adk Adenylate kinase a 98.2 1.4E-05 3.1E-10 80.7 11.1 117 64-191 2-129 (178)
202 PRK00889 adenylylsulfate kinas 98.1 1E-05 2.2E-10 81.2 9.7 39 61-99 3-46 (175)
203 cd02021 GntK Gluconate kinase 98.1 2.3E-05 5.1E-10 76.3 11.8 36 519-554 1-36 (150)
204 PRK13946 shikimate kinase; Pro 98.1 7.1E-06 1.5E-10 83.2 8.3 37 516-552 9-45 (184)
205 PRK03731 aroL shikimate kinase 98.1 5.8E-06 1.2E-10 82.5 7.6 36 519-554 4-39 (171)
206 PRK14530 adenylate kinase; Pro 98.1 6.3E-06 1.4E-10 85.7 8.1 118 519-650 5-127 (215)
207 PLN02674 adenylate kinase 98.1 2.4E-05 5.3E-10 82.6 12.5 120 60-190 29-159 (244)
208 PRK14531 adenylate kinase; Pro 98.1 1.7E-05 3.6E-10 80.4 10.6 115 519-650 4-129 (183)
209 KOG3079 Uridylate kinase/adeny 98.1 1.7E-05 3.8E-10 78.7 9.9 127 59-194 5-138 (195)
210 TIGR01351 adk adenylate kinase 98.1 6.3E-06 1.4E-10 85.4 7.3 116 520-650 2-125 (210)
211 PRK05537 bifunctional sulfate 98.1 1.7E-05 3.6E-10 93.9 11.6 117 49-186 378-509 (568)
212 COG1428 Deoxynucleoside kinase 98.1 4.6E-06 9.9E-11 84.8 5.6 59 168-226 126-188 (216)
213 TIGR03574 selen_PSTK L-seryl-t 98.1 1.4E-05 3.1E-10 84.9 9.7 134 64-227 1-152 (249)
214 PRK12338 hypothetical protein; 98.1 1.1E-05 2.5E-10 87.9 8.9 38 61-98 3-40 (319)
215 PRK05057 aroK shikimate kinase 98.1 2.4E-05 5.3E-10 78.5 10.6 37 517-553 4-40 (172)
216 PRK14532 adenylate kinase; Pro 98.1 2.4E-05 5.2E-10 79.4 10.5 115 520-650 3-128 (188)
217 PRK12338 hypothetical protein; 98.0 8.6E-06 1.9E-10 88.9 7.6 39 516-554 3-41 (319)
218 KOG3354 Gluconate kinase [Carb 98.0 3.7E-05 8E-10 74.2 10.9 39 60-98 10-48 (191)
219 PRK11860 bifunctional 3-phosph 98.0 5.4E-06 1.2E-10 100.2 6.5 125 516-649 441-594 (661)
220 KOG3347 Predicted nucleotide k 98.0 1.7E-05 3.8E-10 76.0 8.4 104 62-192 7-116 (176)
221 PF13671 AAA_33: AAA domain; P 98.0 5.8E-06 1.2E-10 79.6 5.0 36 519-554 1-36 (143)
222 cd02030 NDUO42 NADH:Ubiquinone 98.0 2.3E-05 4.9E-10 81.9 9.9 58 169-226 143-202 (219)
223 PRK02496 adk adenylate kinase; 98.0 2.3E-05 4.9E-10 79.3 9.4 36 519-554 3-38 (184)
224 PTZ00088 adenylate kinase 1; P 98.0 1.4E-05 3E-10 84.0 7.8 123 515-651 4-132 (229)
225 TIGR00174 miaA tRNA isopenteny 98.0 5.9E-07 1.3E-11 97.0 -2.7 170 64-253 1-174 (287)
226 PRK00279 adk adenylate kinase; 98.0 2.4E-05 5.3E-10 81.3 9.3 36 519-554 2-37 (215)
227 COG3265 GntK Gluconate kinase 98.0 2.6E-05 5.6E-10 75.0 8.2 104 68-191 1-113 (161)
228 PLN02840 tRNA dimethylallyltra 97.9 3.8E-06 8.2E-11 94.7 2.6 108 59-167 18-128 (421)
229 PRK12339 2-phosphoglycerate ki 97.9 1.8E-05 3.9E-10 81.2 7.3 36 61-96 2-37 (197)
230 PLN02748 tRNA dimethylallyltra 97.9 3.2E-06 7E-11 96.8 2.0 108 59-167 19-129 (468)
231 cd02027 APSK Adenosine 5'-phos 97.9 1.6E-05 3.5E-10 77.9 6.7 36 64-99 1-41 (149)
232 TIGR03263 guanyl_kin guanylate 97.9 2.7E-05 6E-10 78.2 8.4 25 519-543 3-27 (180)
233 PRK00300 gmk guanylate kinase; 97.9 5.3E-05 1.1E-09 77.9 10.6 28 60-87 3-30 (205)
234 COG3954 PrkB Phosphoribulokina 97.9 5.3E-05 1.1E-09 75.3 10.0 160 61-221 4-203 (289)
235 TIGR01313 therm_gnt_kin carboh 97.9 3E-05 6.4E-10 76.8 8.3 35 520-554 1-35 (163)
236 PRK14021 bifunctional shikimat 97.9 1.9E-05 4.1E-10 93.2 7.9 40 59-98 3-42 (542)
237 cd01673 dNK Deoxyribonucleosid 97.9 5.1E-05 1.1E-09 77.3 10.0 58 168-225 124-183 (193)
238 PRK14526 adenylate kinase; Pro 97.9 4.3E-05 9.3E-10 79.3 9.6 116 64-190 2-123 (211)
239 PRK13948 shikimate kinase; Pro 97.9 3.5E-05 7.6E-10 78.1 8.7 40 515-554 8-47 (182)
240 PF00406 ADK: Adenylate kinase 97.9 2.3E-05 5.1E-10 76.6 7.0 111 67-188 1-122 (151)
241 TIGR00041 DTMP_kinase thymidyl 97.9 0.00014 3E-09 74.0 12.9 26 62-87 3-28 (195)
242 PRK13975 thymidylate kinase; P 97.9 0.00015 3.2E-09 73.9 12.4 26 63-88 3-28 (196)
243 cd00227 CPT Chloramphenicol (C 97.8 5.1E-05 1.1E-09 76.3 8.3 37 518-554 3-41 (175)
244 PRK13808 adenylate kinase; Pro 97.8 5.7E-05 1.2E-09 83.1 9.2 114 520-649 3-127 (333)
245 PLN02674 adenylate kinase 97.8 0.00012 2.7E-09 77.4 11.2 121 515-650 29-159 (244)
246 PLN02459 probable adenylate ki 97.8 7.4E-05 1.6E-09 79.5 9.2 120 62-190 29-154 (261)
247 COG4088 Predicted nucleotide k 97.8 3.4E-05 7.3E-10 77.9 6.2 34 62-95 1-37 (261)
248 PRK13947 shikimate kinase; Pro 97.8 0.00011 2.4E-09 73.2 10.0 34 520-553 4-37 (171)
249 COG0194 Gmk Guanylate kinase [ 97.8 0.00018 3.8E-09 72.2 11.1 157 61-226 3-167 (191)
250 KOG1384 tRNA delta(2)-isopente 97.8 3.8E-05 8.3E-10 82.6 6.7 127 61-189 6-158 (348)
251 PF07931 CPT: Chloramphenicol 97.8 7.3E-05 1.6E-09 75.1 8.4 151 63-240 2-172 (174)
252 PRK04220 2-phosphoglycerate ki 97.8 0.0001 2.2E-09 80.0 9.9 39 60-98 90-129 (301)
253 PRK12339 2-phosphoglycerate ki 97.8 0.00011 2.3E-09 75.5 9.7 39 516-554 2-40 (197)
254 KOG3079 Uridylate kinase/adeny 97.8 9.9E-05 2.1E-09 73.5 8.8 125 514-652 5-136 (195)
255 PF01202 SKI: Shikimate kinase 97.8 3.3E-05 7.1E-10 76.4 5.6 129 71-227 1-143 (158)
256 PRK14529 adenylate kinase; Pro 97.8 9.1E-05 2E-09 77.4 9.0 116 64-191 2-128 (223)
257 PRK09825 idnK D-gluconate kina 97.7 0.00018 3.9E-09 72.6 10.5 36 63-98 4-39 (176)
258 PF00625 Guanylate_kin: Guanyl 97.7 9E-05 2E-09 75.0 8.2 165 62-238 2-176 (183)
259 COG3265 GntK Gluconate kinase 97.7 0.00016 3.5E-09 69.6 9.2 106 523-653 1-115 (161)
260 TIGR02322 phosphon_PhnN phosph 97.7 0.00011 2.3E-09 74.0 8.5 125 519-650 3-132 (179)
261 PRK03846 adenylylsulfate kinas 97.7 0.00018 4E-09 73.8 10.4 41 513-553 20-65 (198)
262 COG2074 2-phosphoglycerate kin 97.7 0.00012 2.6E-09 76.0 8.8 41 58-98 85-126 (299)
263 COG1936 Predicted nucleotide k 97.7 9.1E-05 2E-09 73.2 7.6 104 519-659 2-108 (180)
264 PRK12269 bifunctional cytidyla 97.7 5.2E-05 1.1E-09 93.0 7.1 39 517-555 34-72 (863)
265 PRK00698 tmk thymidylate kinas 97.7 0.0003 6.6E-09 72.0 11.7 25 62-86 3-27 (205)
266 PLN02842 nucleotide kinase 97.7 0.00015 3.3E-09 83.6 10.0 114 67-190 2-122 (505)
267 PRK00300 gmk guanylate kinase; 97.7 0.00027 5.8E-09 72.6 10.9 27 516-542 4-30 (205)
268 COG0563 Adk Adenylate kinase a 97.7 2.4E-05 5.2E-10 79.0 3.0 117 519-651 2-129 (178)
269 PRK05416 glmZ(sRNA)-inactivati 97.7 0.00028 6.1E-09 76.6 11.0 31 60-91 4-34 (288)
270 PF08433 KTI12: Chromatin asso 97.6 0.00024 5.2E-09 76.5 10.3 111 62-195 1-125 (270)
271 PRK10078 ribose 1,5-bisphospho 97.6 9E-05 2E-09 75.2 6.7 126 519-650 4-132 (186)
272 PF03308 ArgK: ArgK protein; 97.6 0.00021 4.5E-09 75.4 9.1 122 48-178 15-152 (266)
273 PHA02530 pseT polynucleotide k 97.6 9.3E-05 2E-09 80.7 6.8 37 517-553 2-39 (300)
274 KOG3354 Gluconate kinase [Carb 97.6 6.5E-05 1.4E-09 72.5 4.7 49 515-563 10-58 (191)
275 cd02030 NDUO42 NADH:Ubiquinone 97.6 0.00031 6.6E-09 73.4 10.3 56 629-686 143-199 (219)
276 smart00072 GuKc Guanylate kina 97.6 0.00038 8.2E-09 70.6 10.7 157 62-226 2-167 (184)
277 cd01672 TMPK Thymidine monopho 97.6 0.00054 1.2E-08 69.3 11.8 30 63-92 1-33 (200)
278 PF13189 Cytidylate_kin2: Cyti 97.6 0.00014 3.1E-09 73.5 7.4 158 64-226 1-178 (179)
279 PRK11545 gntK gluconate kinase 97.6 0.00033 7.1E-09 69.7 9.9 30 68-97 1-30 (163)
280 COG1703 ArgK Putative periplas 97.6 0.00034 7.4E-09 74.8 10.3 122 50-178 39-174 (323)
281 PF06414 Zeta_toxin: Zeta toxi 97.6 0.00012 2.5E-09 75.3 6.7 42 59-100 12-56 (199)
282 COG0703 AroK Shikimate kinase 97.6 9.9E-05 2.1E-09 73.5 5.8 35 520-554 5-39 (172)
283 PRK09825 idnK D-gluconate kina 97.6 0.00048 1E-08 69.5 10.6 36 519-554 5-40 (176)
284 cd01673 dNK Deoxyribonucleosid 97.6 0.00026 5.6E-09 72.1 8.7 48 628-677 124-171 (193)
285 PRK05506 bifunctional sulfate 97.6 0.00032 6.9E-09 84.6 10.8 107 58-185 456-574 (632)
286 PLN02459 probable adenylate ki 97.6 0.00035 7.6E-09 74.4 9.8 122 516-650 28-154 (261)
287 PF01583 APS_kinase: Adenylyls 97.5 0.00019 4E-09 70.8 7.1 38 516-553 1-43 (156)
288 TIGR03575 selen_PSTK_euk L-ser 97.5 9.9E-05 2.2E-09 81.7 5.7 35 64-98 1-41 (340)
289 COG0645 Predicted kinase [Gene 97.5 0.00067 1.5E-08 67.0 10.2 111 63-191 2-126 (170)
290 TIGR01663 PNK-3'Pase polynucle 97.5 0.00043 9.3E-09 80.9 10.4 95 59-191 366-470 (526)
291 PRK05537 bifunctional sulfate 97.5 0.00043 9.3E-09 82.1 10.5 62 487-551 365-432 (568)
292 PRK13951 bifunctional shikimat 97.5 0.00044 9.6E-09 80.5 10.4 35 64-98 2-36 (488)
293 PHA00729 NTP-binding motif con 97.5 0.00091 2E-08 69.8 11.6 106 516-650 16-140 (226)
294 PHA00729 NTP-binding motif con 97.5 0.00049 1.1E-08 71.7 9.6 107 60-190 15-140 (226)
295 TIGR03574 selen_PSTK L-seryl-t 97.5 0.00022 4.7E-09 75.9 7.2 23 519-541 1-23 (249)
296 PRK14738 gmk guanylate kinase; 97.5 0.0006 1.3E-08 70.5 10.1 28 58-85 9-36 (206)
297 TIGR00041 DTMP_kinase thymidyl 97.5 0.0013 2.8E-08 66.9 12.3 26 517-542 3-28 (195)
298 KOG3347 Predicted nucleotide k 97.4 0.00055 1.2E-08 66.0 8.5 102 520-651 10-115 (176)
299 smart00072 GuKc Guanylate kina 97.4 0.0007 1.5E-08 68.6 10.0 122 518-648 3-133 (184)
300 PRK14526 adenylate kinase; Pro 97.4 0.00056 1.2E-08 71.0 9.5 35 520-554 3-37 (211)
301 COG0194 Gmk Guanylate kinase [ 97.4 0.00098 2.1E-08 66.9 10.6 124 516-651 3-136 (191)
302 PRK14529 adenylate kinase; Pro 97.4 0.00062 1.3E-08 71.2 9.7 116 520-651 3-128 (223)
303 PF07931 CPT: Chloramphenicol 97.4 0.00026 5.5E-09 71.2 6.3 37 518-554 2-40 (174)
304 PF03668 ATP_bind_2: P-loop AT 97.4 0.00072 1.6E-08 72.4 9.9 127 62-229 1-142 (284)
305 PRK12337 2-phosphoglycerate ki 97.4 0.00032 6.9E-09 79.9 7.5 39 60-98 253-292 (475)
306 PF06414 Zeta_toxin: Zeta toxi 97.4 0.00043 9.4E-09 71.1 7.6 41 513-553 11-54 (199)
307 PRK13975 thymidylate kinase; P 97.4 0.0011 2.4E-08 67.5 10.5 26 518-543 3-28 (196)
308 PRK04220 2-phosphoglycerate ki 97.4 0.00018 4E-09 77.9 4.7 39 514-552 89-128 (301)
309 PF13189 Cytidylate_kin2: Cyti 97.3 0.00013 2.8E-09 73.8 3.3 129 519-650 1-135 (179)
310 PLN02199 shikimate kinase 97.3 0.00077 1.7E-08 72.8 9.2 36 519-554 104-139 (303)
311 cd02027 APSK Adenosine 5'-phos 97.3 0.00051 1.1E-08 67.3 7.0 34 519-552 1-39 (149)
312 TIGR00455 apsK adenylylsulfate 97.3 0.0016 3.4E-08 65.9 10.7 40 513-552 14-58 (184)
313 TIGR03575 selen_PSTK_euk L-ser 97.3 0.00016 3.5E-09 80.0 3.7 35 520-554 2-42 (340)
314 PRK00091 miaA tRNA delta(2)-is 97.3 0.0002 4.4E-09 78.4 4.4 39 516-554 3-43 (307)
315 PRK14021 bifunctional shikimat 97.3 0.00048 1E-08 81.4 7.6 38 517-554 6-43 (542)
316 PF00406 ADK: Adenylate kinase 97.3 0.00057 1.2E-08 66.8 6.7 112 522-648 1-122 (151)
317 COG0529 CysC Adenylylsulfate k 97.2 0.0015 3.3E-08 64.9 9.1 41 513-553 19-64 (197)
318 PRK00889 adenylylsulfate kinas 97.2 0.0018 4E-08 64.8 10.0 37 516-552 3-44 (175)
319 PF00625 Guanylate_kin: Guanyl 97.2 0.00062 1.3E-08 68.9 6.6 125 518-649 3-134 (183)
320 PF01202 SKI: Shikimate kinase 97.2 0.0004 8.8E-09 68.6 4.6 29 526-554 1-29 (158)
321 COG4639 Predicted kinase [Gene 97.2 0.00082 1.8E-08 65.4 6.4 101 62-190 2-118 (168)
322 COG2019 AdkA Archaeal adenylat 97.1 0.0013 2.8E-08 64.7 7.6 37 60-96 2-39 (189)
323 PLN02842 nucleotide kinase 97.1 0.00092 2E-08 77.3 7.4 115 522-650 2-122 (505)
324 PRK11545 gntK gluconate kinase 97.1 0.0032 6.9E-08 62.7 10.1 31 523-553 1-31 (163)
325 KOG0635 Adenosine 5'-phosphosu 97.1 0.0022 4.7E-08 61.8 8.2 51 60-110 29-84 (207)
326 PRK13973 thymidylate kinase; P 97.1 0.0036 7.9E-08 65.0 10.7 31 63-93 4-37 (213)
327 PRK14738 gmk guanylate kinase; 97.1 0.0019 4.1E-08 66.8 8.4 28 513-540 9-36 (206)
328 PRK05416 glmZ(sRNA)-inactivati 97.0 0.002 4.3E-08 70.0 8.6 27 516-543 5-31 (288)
329 PLN02840 tRNA dimethylallyltra 97.0 0.00055 1.2E-08 77.5 4.3 37 515-551 19-55 (421)
330 PLN02165 adenylate isopentenyl 97.0 0.00055 1.2E-08 75.2 4.1 36 516-551 42-77 (334)
331 TIGR01663 PNK-3'Pase polynucle 97.0 0.0011 2.4E-08 77.5 6.9 38 514-551 366-403 (526)
332 COG0378 HypB Ni2+-binding GTPa 96.9 0.0034 7.5E-08 63.4 8.6 42 513-554 8-54 (202)
333 PRK09435 membrane ATPase/prote 96.9 0.001 2.2E-08 73.6 5.1 41 511-551 50-95 (332)
334 PF08433 KTI12: Chromatin asso 96.9 0.0015 3.3E-08 70.4 6.4 105 519-651 3-121 (270)
335 PF03308 ArgK: ArgK protein; 96.9 0.00084 1.8E-08 70.8 4.1 45 505-549 17-66 (266)
336 PRK13951 bifunctional shikimat 96.9 0.0017 3.6E-08 75.8 6.8 36 519-554 2-37 (488)
337 PRK13973 thymidylate kinase; P 96.8 0.0057 1.2E-07 63.6 9.8 32 517-548 3-37 (213)
338 COG1703 ArgK Putative periplas 96.8 0.0013 2.9E-08 70.4 4.9 120 503-639 37-175 (323)
339 COG4639 Predicted kinase [Gene 96.8 0.0017 3.6E-08 63.2 5.0 36 517-554 2-37 (168)
340 COG4088 Predicted nucleotide k 96.8 0.0018 3.9E-08 65.8 5.2 24 519-542 3-26 (261)
341 PF00004 AAA: ATPase family as 96.8 0.0014 3.1E-08 61.6 4.4 32 65-96 1-32 (132)
342 PLN02748 tRNA dimethylallyltra 96.8 0.001 2.2E-08 76.5 4.0 40 515-554 20-61 (468)
343 PRK09435 membrane ATPase/prote 96.8 0.0021 4.7E-08 71.1 6.1 44 53-96 47-95 (332)
344 TIGR00174 miaA tRNA isopenteny 96.7 0.00097 2.1E-08 72.3 3.1 36 519-554 1-38 (287)
345 PF00004 AAA: ATPase family as 96.7 0.0014 3E-08 61.7 3.4 33 520-552 1-33 (132)
346 COG3025 Uncharacterized conser 96.7 0.0019 4.1E-08 72.1 4.9 118 257-381 34-180 (432)
347 TIGR00318 cyaB adenylyl cyclas 96.6 0.0018 4E-08 65.2 4.3 86 729-817 32-119 (174)
348 PRK07933 thymidylate kinase; V 96.6 0.0045 9.7E-08 64.4 7.2 25 63-87 1-25 (213)
349 PLN02772 guanylate kinase 96.6 0.013 2.8E-07 65.9 11.2 26 61-86 134-159 (398)
350 KOG3877 NADH:ubiquinone oxidor 96.6 0.011 2.4E-07 62.2 9.6 39 60-98 69-110 (393)
351 PF00448 SRP54: SRP54-type pro 96.6 0.0016 3.4E-08 67.0 3.3 38 517-554 1-43 (196)
352 PF01745 IPT: Isopentenyl tran 96.6 0.0025 5.5E-08 65.3 4.6 40 62-101 1-42 (233)
353 PF03668 ATP_bind_2: P-loop AT 96.5 0.006 1.3E-07 65.5 7.4 55 631-689 84-139 (284)
354 COG2074 2-phosphoglycerate kin 96.5 0.0078 1.7E-07 62.9 7.7 39 513-551 85-124 (299)
355 TIGR00150 HI0065_YjeE ATPase, 96.5 0.0054 1.2E-07 58.9 5.9 44 53-96 13-57 (133)
356 PLN02924 thymidylate kinase 96.5 0.018 3.9E-07 60.3 10.4 28 60-87 14-41 (220)
357 COG1660 Predicted P-loop-conta 96.4 0.023 5E-07 59.8 10.9 59 171-229 85-143 (286)
358 PF00448 SRP54: SRP54-type pro 96.4 0.0028 6E-08 65.2 4.2 38 62-99 1-43 (196)
359 TIGR00150 HI0065_YjeE ATPase, 96.4 0.0044 9.5E-08 59.5 5.1 30 514-543 19-48 (133)
360 PF13521 AAA_28: AAA domain; P 96.4 0.0025 5.5E-08 63.0 3.7 32 64-98 1-32 (163)
361 PF02367 UPF0079: Uncharacteri 96.4 0.0055 1.2E-07 58.1 5.5 32 57-88 10-41 (123)
362 COG3709 Uncharacterized compon 96.4 0.069 1.5E-06 52.5 12.8 151 62-227 5-167 (192)
363 PRK10751 molybdopterin-guanine 96.4 0.0031 6.6E-08 63.4 3.8 28 515-542 4-31 (173)
364 PRK05506 bifunctional sulfate 96.3 0.012 2.6E-07 71.1 9.5 40 514-553 457-501 (632)
365 COG0125 Tmk Thymidylate kinase 96.3 0.022 4.7E-07 59.0 9.9 59 168-227 127-188 (208)
366 PRK07933 thymidylate kinase; V 96.3 0.013 2.9E-07 60.9 8.3 49 628-676 132-184 (213)
367 smart00763 AAA_PrkA PrkA AAA d 96.3 0.006 1.3E-07 67.8 6.0 28 515-542 76-103 (361)
368 smart00763 AAA_PrkA PrkA AAA d 96.3 0.006 1.3E-07 67.9 5.9 44 44-87 59-103 (361)
369 COG4619 ABC-type uncharacteriz 96.3 0.0032 6.8E-08 62.2 3.2 23 519-541 31-53 (223)
370 COG0324 MiaA tRNA delta(2)-iso 96.2 0.0037 8E-08 68.1 3.8 39 516-554 2-42 (308)
371 PRK12337 2-phosphoglycerate ki 96.2 0.0049 1.1E-07 70.5 4.5 39 515-553 253-292 (475)
372 PHA03132 thymidine kinase; Pro 96.1 0.041 8.8E-07 64.9 12.1 30 62-91 257-286 (580)
373 PRK13976 thymidylate kinase; P 96.1 0.022 4.8E-07 59.1 8.9 25 63-87 1-25 (209)
374 COG1618 Predicted nucleotide k 96.1 0.0056 1.2E-07 60.0 4.0 27 61-87 4-30 (179)
375 PRK10751 molybdopterin-guanine 96.1 0.0055 1.2E-07 61.6 4.1 28 60-87 4-31 (173)
376 COG4619 ABC-type uncharacteriz 96.1 0.0069 1.5E-07 59.8 4.5 23 64-86 31-53 (223)
377 COG2954 Uncharacterized protei 96.1 0.011 2.4E-07 56.2 5.6 93 283-381 39-133 (156)
378 PF13521 AAA_28: AAA domain; P 96.0 0.0041 8.9E-08 61.5 2.9 32 520-554 2-33 (163)
379 PRK13974 thymidylate kinase; P 96.0 0.032 6.9E-07 57.9 9.4 26 62-87 3-28 (212)
380 PRK14729 miaA tRNA delta(2)-is 96.0 0.0053 1.1E-07 67.0 3.6 37 517-554 4-42 (300)
381 KOG0744 AAA+-type ATPase [Post 96.0 0.018 3.8E-07 62.3 7.3 36 62-99 177-212 (423)
382 PF02367 UPF0079: Uncharacteri 95.9 0.0095 2.1E-07 56.5 4.7 29 514-542 12-40 (123)
383 PRK06761 hypothetical protein; 95.9 0.0098 2.1E-07 64.3 5.4 33 518-550 4-36 (282)
384 TIGR03499 FlhF flagellar biosy 95.9 0.0087 1.9E-07 65.0 4.9 38 61-98 193-237 (282)
385 PRK10646 ADP-binding protein; 95.9 0.018 4E-07 56.6 6.6 35 54-88 20-54 (153)
386 TIGR01425 SRP54_euk signal rec 95.9 0.0073 1.6E-07 68.9 4.4 38 515-552 98-140 (429)
387 smart00382 AAA ATPases associa 95.9 0.0062 1.3E-07 56.6 3.2 26 63-88 3-28 (148)
388 PRK06761 hypothetical protein; 95.9 0.0078 1.7E-07 65.1 4.3 34 63-96 4-37 (282)
389 COG0125 Tmk Thymidylate kinase 95.9 0.03 6.5E-07 58.0 8.3 159 516-689 2-187 (208)
390 cd00820 PEPCK_HprK Phosphoenol 95.8 0.0095 2.1E-07 55.0 4.1 33 62-96 15-47 (107)
391 cd00071 GMPK Guanosine monopho 95.8 0.0058 1.3E-07 59.0 2.9 24 64-87 1-24 (137)
392 PRK05800 cobU adenosylcobinami 95.8 0.0079 1.7E-07 60.4 3.9 27 63-89 2-28 (170)
393 TIGR00101 ureG urease accessor 95.8 0.0079 1.7E-07 61.9 3.9 36 517-552 1-40 (199)
394 smart00382 AAA ATPases associa 95.8 0.0064 1.4E-07 56.5 3.0 25 518-542 3-27 (148)
395 PF01591 6PF2K: 6-phosphofruct 95.8 0.02 4.4E-07 59.8 6.9 42 59-100 9-55 (222)
396 COG2805 PilT Tfp pilus assembl 95.8 0.021 4.6E-07 61.3 7.0 88 3-95 59-162 (353)
397 TIGR00750 lao LAO/AO transport 95.8 0.011 2.3E-07 64.9 5.1 45 53-97 25-74 (300)
398 COG1618 Predicted nucleotide k 95.8 0.0079 1.7E-07 59.0 3.5 39 516-554 4-42 (179)
399 PRK08099 bifunctional DNA-bind 95.8 0.0091 2E-07 68.0 4.5 33 60-92 217-249 (399)
400 cd01672 TMPK Thymidine monopho 95.8 0.0069 1.5E-07 61.2 3.2 24 518-541 1-24 (200)
401 TIGR03499 FlhF flagellar biosy 95.8 0.0083 1.8E-07 65.2 4.0 38 516-553 193-237 (282)
402 cd00071 GMPK Guanosine monopho 95.8 0.0062 1.3E-07 58.8 2.6 24 519-542 1-24 (137)
403 COG1126 GlnQ ABC-type polar am 95.7 0.0066 1.4E-07 62.4 2.9 22 518-539 29-50 (240)
404 TIGR00750 lao LAO/AO transport 95.7 0.0093 2E-07 65.4 4.1 41 512-552 29-74 (300)
405 COG1136 SalX ABC-type antimicr 95.7 0.0079 1.7E-07 62.8 3.3 25 62-86 31-55 (226)
406 COG1124 DppF ABC-type dipeptid 95.7 0.007 1.5E-07 63.2 2.9 24 518-541 34-57 (252)
407 COG1660 Predicted P-loop-conta 95.7 0.028 6E-07 59.2 7.2 56 631-689 85-140 (286)
408 COG1136 SalX ABC-type antimicr 95.7 0.0074 1.6E-07 63.0 3.0 24 518-541 32-55 (226)
409 TIGR00064 ftsY signal recognit 95.7 0.012 2.5E-07 63.7 4.6 39 60-98 70-113 (272)
410 PRK08903 DnaA regulatory inact 95.7 0.021 4.6E-07 59.7 6.4 50 47-96 27-81 (227)
411 PF13555 AAA_29: P-loop contai 95.6 0.011 2.5E-07 48.9 3.4 23 519-541 25-47 (62)
412 PRK00698 tmk thymidylate kinas 95.6 0.0099 2.1E-07 60.8 3.8 25 517-541 3-27 (205)
413 PF03029 ATP_bind_1: Conserved 95.6 0.0076 1.7E-07 63.8 3.0 29 67-95 1-34 (238)
414 COG1124 DppF ABC-type dipeptid 95.6 0.0084 1.8E-07 62.7 3.2 26 61-86 32-57 (252)
415 PHA02575 1 deoxynucleoside mon 95.6 0.01 2.2E-07 61.7 3.7 32 63-95 1-33 (227)
416 COG1126 GlnQ ABC-type polar am 95.6 0.0089 1.9E-07 61.5 3.1 24 61-84 27-50 (240)
417 PF02223 Thymidylate_kin: Thym 95.6 0.053 1.2E-06 54.7 8.8 45 168-212 118-164 (186)
418 PF13555 AAA_29: P-loop contai 95.6 0.014 3.1E-07 48.3 3.7 23 64-86 25-47 (62)
419 PRK05800 cobU adenosylcobinami 95.6 0.011 2.5E-07 59.2 3.7 26 519-544 3-28 (170)
420 TIGR01425 SRP54_euk signal rec 95.5 0.015 3.2E-07 66.4 5.1 39 60-98 98-141 (429)
421 cd00820 PEPCK_HprK Phosphoenol 95.5 0.009 1.9E-07 55.2 2.7 22 517-538 15-36 (107)
422 PF07728 AAA_5: AAA domain (dy 95.5 0.015 3.2E-07 55.8 4.1 26 65-90 2-27 (139)
423 TIGR00101 ureG urease accessor 95.5 0.017 3.6E-07 59.6 4.7 35 62-96 1-39 (199)
424 PLN00020 ribulose bisphosphate 95.5 0.012 2.7E-07 65.3 3.9 36 514-549 145-180 (413)
425 COG0802 Predicted ATPase or ki 95.5 0.033 7.2E-07 54.2 6.4 35 53-87 16-50 (149)
426 TIGR01241 FtsH_fam ATP-depende 95.5 0.039 8.5E-07 64.8 8.4 33 62-94 88-120 (495)
427 PF01745 IPT: Isopentenyl tran 95.5 0.013 2.8E-07 60.3 3.7 34 518-551 2-35 (233)
428 COG0378 HypB Ni2+-binding GTPa 95.5 0.021 4.5E-07 57.9 5.1 37 62-98 13-53 (202)
429 cd00009 AAA The AAA+ (ATPases 95.4 0.019 4.1E-07 54.0 4.7 25 517-541 19-43 (151)
430 TIGR00064 ftsY signal recognit 95.4 0.013 2.8E-07 63.4 3.9 40 514-553 69-113 (272)
431 PRK10416 signal recognition pa 95.4 0.015 3.3E-07 64.2 4.6 38 60-97 112-154 (318)
432 PRK10416 signal recognition pa 95.4 0.012 2.7E-07 64.9 3.8 37 515-551 112-153 (318)
433 PF03215 Rad17: Rad17 cell cyc 95.4 0.025 5.4E-07 66.4 6.5 35 58-92 41-75 (519)
434 PF03029 ATP_bind_1: Conserved 95.4 0.0079 1.7E-07 63.7 2.1 28 522-549 1-33 (238)
435 cd03115 SRP The signal recogni 95.4 0.015 3.3E-07 58.0 4.0 35 64-98 2-41 (173)
436 PRK11889 flhF flagellar biosyn 95.4 0.02 4.4E-07 64.3 5.3 38 60-97 239-281 (436)
437 PRK14974 cell division protein 95.4 0.016 3.5E-07 64.3 4.5 39 60-98 138-181 (336)
438 PRK09087 hypothetical protein; 95.3 0.027 5.9E-07 59.2 5.9 34 63-96 45-78 (226)
439 PRK14974 cell division protein 95.3 0.014 3E-07 64.9 3.8 38 514-551 137-179 (336)
440 cd00009 AAA The AAA+ (ATPases 95.3 0.029 6.3E-07 52.7 5.6 26 61-86 18-43 (151)
441 PRK10646 ADP-binding protein; 95.3 0.026 5.6E-07 55.5 5.2 30 514-543 25-54 (153)
442 cd03116 MobB Molybdenum is an 95.3 0.017 3.6E-07 57.4 4.0 25 62-86 1-25 (159)
443 COG3840 ThiQ ABC-type thiamine 95.3 0.016 3.5E-07 58.1 3.8 106 61-166 24-165 (231)
444 PRK11889 flhF flagellar biosyn 95.3 0.015 3.2E-07 65.4 3.9 38 515-552 239-281 (436)
445 PRK08099 bifunctional DNA-bind 95.3 0.014 3E-07 66.5 3.9 32 514-545 216-247 (399)
446 PF05496 RuvB_N: Holliday junc 95.3 0.033 7.2E-07 58.0 6.2 51 40-90 22-78 (233)
447 KOG3062 RNA polymerase II elon 95.3 0.13 2.8E-06 53.2 10.1 107 62-190 1-123 (281)
448 COG0645 Predicted kinase [Gene 95.2 0.015 3.2E-07 57.7 3.2 37 518-554 2-38 (170)
449 TIGR00390 hslU ATP-dependent p 95.2 0.019 4.2E-07 65.0 4.6 34 62-95 47-80 (441)
450 COG1116 TauB ABC-type nitrate/ 95.2 0.013 2.8E-07 61.6 3.0 24 518-541 30-53 (248)
451 KOG4235 Mitochondrial thymidin 95.2 0.013 2.9E-07 58.9 2.8 46 608-653 132-178 (244)
452 cd03115 SRP The signal recogni 95.2 0.016 3.5E-07 57.9 3.5 34 519-552 2-40 (173)
453 KOG3877 NADH:ubiquinone oxidor 95.2 0.017 3.6E-07 61.0 3.7 39 516-554 70-111 (393)
454 PRK05201 hslU ATP-dependent pr 95.2 0.018 3.8E-07 65.3 4.0 34 62-95 50-83 (443)
455 PF07724 AAA_2: AAA domain (Cd 95.1 0.028 6.1E-07 56.4 5.1 36 62-97 3-44 (171)
456 CHL00195 ycf46 Ycf46; Provisio 95.1 0.042 9E-07 64.2 7.2 61 35-95 221-292 (489)
457 cd01131 PilT Pilus retraction 95.1 0.016 3.5E-07 59.5 3.4 24 519-542 3-26 (198)
458 PF03205 MobB: Molybdopterin g 95.1 0.017 3.6E-07 56.1 3.2 23 519-541 2-24 (140)
459 PF06309 Torsin: Torsin; Inte 95.1 0.073 1.6E-06 50.5 7.3 41 46-86 35-77 (127)
460 PRK14490 putative bifunctional 95.1 0.017 3.7E-07 65.2 3.7 28 515-542 3-30 (369)
461 PRK10867 signal recognition pa 95.1 0.02 4.4E-07 65.6 4.2 38 515-552 98-141 (433)
462 PTZ00322 6-phosphofructo-2-kin 95.1 0.14 3E-06 62.4 11.6 40 61-100 214-258 (664)
463 PRK14961 DNA polymerase III su 95.0 0.04 8.7E-07 62.1 6.5 50 39-88 13-64 (363)
464 COG1419 FlhF Flagellar GTP-bin 95.0 0.041 8.9E-07 61.8 6.4 39 61-99 202-247 (407)
465 COG1116 TauB ABC-type nitrate/ 95.0 0.017 3.7E-07 60.7 3.2 25 62-86 29-53 (248)
466 TIGR01526 nadR_NMN_Atrans nico 95.0 0.023 4.9E-07 63.1 4.4 30 62-91 162-191 (325)
467 cd01131 PilT Pilus retraction 95.0 0.02 4.2E-07 58.9 3.6 24 64-87 3-26 (198)
468 PF03205 MobB: Molybdopterin g 95.0 0.02 4.2E-07 55.7 3.4 24 63-86 1-24 (140)
469 PRK12724 flagellar biosynthesi 95.0 0.02 4.4E-07 64.9 4.0 38 61-98 222-265 (432)
470 PF07728 AAA_5: AAA domain (dy 95.0 0.018 3.9E-07 55.1 3.2 26 520-545 2-27 (139)
471 PF13173 AAA_14: AAA domain 95.0 0.029 6.2E-07 53.3 4.4 35 62-96 2-40 (128)
472 TIGR00959 ffh signal recogniti 95.0 0.022 4.7E-07 65.4 4.1 37 515-551 97-139 (428)
473 COG1117 PstB ABC-type phosphat 95.0 0.014 3.1E-07 59.8 2.4 26 514-539 30-55 (253)
474 PRK13768 GTPase; Provisional 95.0 0.028 6.1E-07 60.1 4.7 35 62-96 2-41 (253)
475 cd03116 MobB Molybdenum is an 94.9 0.023 5E-07 56.4 3.7 25 518-542 2-26 (159)
476 COG3172 NadR Predicted ATPase/ 94.9 0.023 4.9E-07 55.8 3.5 28 62-89 8-35 (187)
477 COG2274 SunT ABC-type bacterio 94.9 0.04 8.7E-07 67.0 6.4 27 60-86 497-523 (709)
478 PF13173 AAA_14: AAA domain 94.9 0.026 5.5E-07 53.6 3.9 36 518-553 3-42 (128)
479 PRK08084 DNA replication initi 94.9 0.047 1E-06 57.7 6.2 59 36-95 16-83 (235)
480 PLN00020 ribulose bisphosphate 94.9 0.029 6.2E-07 62.5 4.7 36 60-95 146-181 (413)
481 PRK12724 flagellar biosynthesi 94.9 0.021 4.5E-07 64.9 3.6 37 516-552 222-264 (432)
482 COG3172 NadR Predicted ATPase/ 94.9 0.024 5.2E-07 55.6 3.4 28 517-544 8-35 (187)
483 PRK12726 flagellar biosynthesi 94.8 0.024 5.3E-07 63.5 3.9 39 515-553 204-247 (407)
484 COG1763 MobB Molybdopterin-gua 94.8 0.022 4.7E-07 56.6 3.2 25 62-86 2-26 (161)
485 PRK12723 flagellar biosynthesi 94.8 0.031 6.6E-07 63.3 4.8 38 61-98 173-219 (388)
486 PRK00771 signal recognition pa 94.8 0.022 4.8E-07 65.4 3.7 37 515-551 93-134 (437)
487 COG1763 MobB Molybdopterin-gua 94.8 0.02 4.4E-07 56.8 2.9 26 517-542 2-27 (161)
488 PF06309 Torsin: Torsin; Inte 94.8 0.054 1.2E-06 51.4 5.6 40 502-541 36-77 (127)
489 TIGR01166 cbiO cobalt transpor 94.8 0.02 4.4E-07 58.1 3.0 20 519-538 20-39 (190)
490 TIGR00176 mobB molybdopterin-g 94.8 0.021 4.5E-07 56.5 2.9 23 519-541 1-23 (155)
491 PRK10867 signal recognition pa 94.8 0.035 7.6E-07 63.7 5.2 39 60-98 98-142 (433)
492 PHA02575 1 deoxynucleoside mon 94.8 0.021 4.6E-07 59.3 3.1 35 518-553 1-36 (227)
493 PF05496 RuvB_N: Holliday junc 94.8 0.035 7.7E-07 57.8 4.6 30 516-545 49-78 (233)
494 PRK09087 hypothetical protein; 94.8 0.02 4.4E-07 60.1 2.9 34 520-553 47-80 (226)
495 PRK05201 hslU ATP-dependent pr 94.8 0.024 5.3E-07 64.2 3.7 34 517-550 50-83 (443)
496 PRK12723 flagellar biosynthesi 94.8 0.025 5.5E-07 64.0 3.9 39 515-553 172-219 (388)
497 PF00005 ABC_tran: ABC transpo 94.7 0.018 3.9E-07 54.9 2.3 20 519-538 13-32 (137)
498 TIGR00960 3a0501s02 Type II (G 94.7 0.021 4.5E-07 59.2 2.9 20 519-538 31-50 (216)
499 PRK12726 flagellar biosynthesi 94.7 0.034 7.5E-07 62.3 4.8 39 60-98 204-247 (407)
500 cd01130 VirB11-like_ATPase Typ 94.7 0.03 6.5E-07 56.9 4.0 37 505-541 13-49 (186)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=3.4e-62 Score=550.94 Aligned_cols=331 Identities=33% Similarity=0.627 Sum_probs=308.0
Q ss_pred ccceecccCCCCcchhhhhHHHHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhhhcc
Q 003460 482 RDTVKLVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKDF 560 (818)
Q Consensus 482 ~~~~~~~~~~~~~~~~e~~~~~~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~~~~~~~~ 560 (818)
.++++++|+|+.++|++||++++++++.+..+.+++++|||+|||||||||||+.|+..+ ++.+|++|+|+.......+
T Consensus 30 ~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~ 109 (656)
T PLN02318 30 SDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDG 109 (656)
T ss_pred CCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCc
Confidence 478999999999999999999999999999888889999999999999999999999988 4679999999876544567
Q ss_pred cCCCcccccHHHHHHHHHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChh
Q 003460 561 KYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVH 640 (818)
Q Consensus 561 ~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d 640 (818)
+|++|.++|++.+.++|..|++|+.+.+|.||+.++++.+.. .....+.+|||+||+|++++.+++++|++|||+++.+
T Consensus 110 nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~-~i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvD 188 (656)
T PLN02318 110 NFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYR-TLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVH 188 (656)
T ss_pred cCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCc-eeecCCCcEEEEechhhccHhHHhhCCEEEEEcCCcc
Confidence 899999999999999999999999999999999999887432 2335678999999999999999999999999999999
Q ss_pred HHHHHHHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccccchhhhhccC
Q 003460 641 SHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKIL 718 (818)
Q Consensus 641 ~rl~Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m 718 (818)
.++.||+.||..++|++.+. .+|...++|+|.+||+|++++||++|.|+|+|+...+++.+++++.+++..++|.+.|
T Consensus 189 irL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L 268 (656)
T PLN02318 189 FDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVL 268 (656)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHh
Confidence 99999999999999998875 6888899999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhccccccceeeecCCCCCCCCCCCCCCeEEEEEeCceeEEEEecccccCCceeccccceEEehhhHHHHHhhhhH
Q 003460 719 DPAKFCSSAQNFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDISISTVAGLLNLGYQ 798 (818)
Q Consensus 719 ~~~~v~~~v~~y~~~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~g~~ 798 (818)
+.. ....+++|+|+||.+|+.+ +.+|++|||||+|+|||+|||+|||+||||||+|+++|||+|+++||||+|||+
T Consensus 269 ~~~-~~~~~~~~~DiYl~~P~~d---~~~~~e~LRvR~~~Gk~~Ltyke~i~dgp~ii~pk~~fEv~v~~~~gL~aLGy~ 344 (656)
T PLN02318 269 SED-HTETTEETYDIYLLPPGED---PETCQSYLRMRNRDGKYSLMFEEWVTDEPFIISPRITFEVSVRLLGGLMALGYT 344 (656)
T ss_pred hhc-cccccceeeEEEecCCCCC---chhccceEEEEecCCEEEEEEecccccCCeecCcceeEEEeeehHhHHHHcCCc
Confidence 864 7788899999999999965 357899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhheeeecceEEe
Q 003460 799 AVAYIEASAFIYQDGKVRL 817 (818)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~ 817 (818)
++|+++|++++|++|+|+|
T Consensus 345 ~~a~vkk~r~iy~~g~v~i 363 (656)
T PLN02318 345 IATILKRSSHVFSDDKVCV 363 (656)
T ss_pred eEEEEEEEEEEEecCCEEE
Confidence 9999999999999999987
No 2
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=8.8e-60 Score=531.44 Aligned_cols=366 Identities=32% Similarity=0.618 Sum_probs=324.3
Q ss_pred CccccccCCcccccchhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceeccc----cc
Q 003460 28 SPSILQSLPVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV----DE 102 (818)
Q Consensus 28 ~~~~~~~~~~~~s~~~~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~----~~ 102 (818)
....+.+.+..+|||+||++.+++++.+.++.+++++|||+|++||||||||+.|+..+ ++.+|++|+|+... ..
T Consensus 31 ~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~i~~n 110 (656)
T PLN02318 31 DRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGN 110 (656)
T ss_pred CceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhhhCcc
Confidence 45567778889999999999999999999988889999999999999999999999988 46899999997521 13
Q ss_pred CCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHH
Q 003460 103 GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFS 182 (818)
Q Consensus 103 ~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~ 182 (818)
.+.++++|...+.+.|..++.|+.+.+|.||+..+.+........++.++||+||+|++++.+++++|++|||+++.+.+
T Consensus 111 fD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDir 190 (656)
T PLN02318 111 FDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFD 190 (656)
T ss_pred CCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccHhHHhhCCEEEEEcCCccHH
Confidence 45678899999999999999999999999999999887655566778899999999999999999999999999999999
Q ss_pred HHHHHHhccCCC-cCHHHHHH----hhchhhhhccCCccccCcEEEECCCC--CChhhhhhcccCcccCCcccccccc--
Q 003460 183 LISKVQYDIGDS-CSLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFV--SSFREAIYKLKCRSEAPGACSISAF-- 253 (818)
Q Consensus 183 l~Rri~Rd~~~~-~s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~~~--~~~~~~~~~l~~~~~~l~~~~~~~~-- 253 (818)
+.||+.||...+ .+.+.+++ .+.|+|.+||+|++++||+||+|+|. .++++|+|++++..++..+++-..+
T Consensus 191 L~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~ 270 (656)
T PLN02318 191 LVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSE 270 (656)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhh
Confidence 999999998776 46666655 45999999999999999999999885 7999999999998876555533322
Q ss_pred --cccc-cccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEeccHHHHHHhcCCc
Q 003460 254 --QGNE-AQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYS 330 (818)
Q Consensus 254 --~~~~-~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~~~~~L~~LGf~ 330 (818)
..+. .-.|+||+.|++||.++++ |||||+++++++|||| +|+.+++|+|.++.++||+|.+.++|++|||+
T Consensus 271 ~~~~~~~~~~DiYl~~P~~d~~~~~e-----~LRvR~~~Gk~~Ltyk-e~i~dgp~ii~pk~~fEv~v~~~~gL~aLGy~ 344 (656)
T PLN02318 271 DHTETTEETYDIYLLPPGEDPETCQS-----YLRMRNRDGKYSLMFE-EWVTDEPFIISPRITFEVSVRLLGGLMALGYT 344 (656)
T ss_pred ccccccceeeEEEecCCCCCchhccc-----eEEEEecCCEEEEEEe-cccccCCeecCcceeEEEeeehHhHHHHcCCc
Confidence 2222 3359999999999876655 5599999999999999 99999999999999999999999999999999
Q ss_pred eeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecCHHHHHHHHHHcCCCCCccchhHHHHH-HhhcC
Q 003460 331 VVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNRKTVGAEALRMGINGPWITKSYLEMV-LEKKG 399 (818)
Q Consensus 331 ~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~~~~~i~~~~~~Lgl~~~~~~~sYlel~-l~~~~ 399 (818)
+++.++|.|++|.+|+++|++|+|+|||.+|||||+.+++.|.++|++||++++++++|||||+ +|+.-
T Consensus 345 ~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~i~~SYlE~i~~~~~~ 414 (656)
T PLN02318 345 IATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSYIPRTYIEQIQLEKLV 414 (656)
T ss_pred eEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 55553
No 3
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.9e-34 Score=292.42 Aligned_cols=174 Identities=33% Similarity=0.537 Sum_probs=159.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC---cccccccccchhh------hhcccCCCcccccHHHHHHHHHHHhcCCc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC---EVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRR 585 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~---~vis~Ddfy~~~~------~~~~~~d~p~t~D~~ll~~~L~~L~~g~~ 585 (818)
.++++|||+|+|||||||+|+.|.+.|+. .+|++||||+... ....||++|.++|+++|.++|..|++|++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 45699999999999999999999999984 4999999999733 34568999999999999999999999999
Q ss_pred eecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--hh
Q 003460 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--ND 662 (818)
Q Consensus 586 v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~ 662 (818)
+..|.||+.+|.|.. ......|.+|||+||+|+++ ..+++++|++|||+++.|.|+.||+.||+.+||++++. .|
T Consensus 86 v~~P~yd~~~~~r~~--~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~q 163 (218)
T COG0572 86 VDLPVYDYKTHTREP--ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQ 163 (218)
T ss_pred ccccccchhcccccC--CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999999999985 33445788999999999998 58999999999999999999999999999999999987 79
Q ss_pred HHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 663 IMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 663 ~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
|.+.++|+|++||+|++++||++|+...
T Consensus 164 y~~~vkp~~~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 164 YVKTVRPMYEQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred HHHhhChhhhhccCcccccceEEeecCC
Confidence 9999999999999999999999998654
No 4
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.7e-31 Score=260.08 Aligned_cols=142 Identities=24% Similarity=0.396 Sum_probs=132.2
Q ss_pred ccccccccccccccceeeccCCCCCcchhhhccCCeeeEe-eeCCEEEEEEcceeecCCCcccCceeEEEEec----cHH
Q 003460 247 ACSISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMR-QSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL 321 (818)
Q Consensus 247 ~~~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR-~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~ 321 (818)
++.++.|.+.+.|+|+||++|||||+.||+|+ ||| ..++++.+|||||+++..+ |+|.|+|+.| .+.
T Consensus 21 ~~~~~~~~~~e~q~DiYf~~p~rdf~~tdeal-----RiR~~~~~~~~lTYKgp~ld~~~---k~r~E~E~~v~D~~~~~ 92 (178)
T COG1437 21 ASLGAKFIKEEEQEDIYFDHPCRDFADTDEAL-----RIRRINGGEVFLTYKGPKLDRES---KTREEIEIEVSDVEKAL 92 (178)
T ss_pred HhccccccceeeeeeeeeecCCcchhcCccee-----EEEEecCCcEEEEEecccccccc---cceeeEEEEeCCHHHHH
Confidence 34678899999999999999999999999999 999 6688999999999999888 9999999999 999
Q ss_pred HHHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--CH-------HHHHHHHHHcCCCC-CccchhHH
Q 003460 322 GGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGING-PWITKSYL 391 (818)
Q Consensus 322 ~~L~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~~-------~~i~~~~~~Lgl~~-~~~~~sYl 391 (818)
++|++|||.++++++|.|++|..++++|+||.|+|||. |+|||.+ +. +.+.+++++||++. ..+++||+
T Consensus 93 ~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG~-F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYl 171 (178)
T COG1437 93 EILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLGD-FLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYL 171 (178)
T ss_pred HHHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCcc-cEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHH
Confidence 99999999999999999999999999999999999999 9999999 22 56899999999985 45999999
Q ss_pred HHHHhh
Q 003460 392 EMVLEK 397 (818)
Q Consensus 392 el~l~~ 397 (818)
||+..+
T Consensus 172 ELl~~~ 177 (178)
T COG1437 172 ELLLEK 177 (178)
T ss_pred HHHhcc
Confidence 999864
No 5
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=99.97 E-value=2e-32 Score=267.51 Aligned_cols=222 Identities=22% Similarity=0.331 Sum_probs=164.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh--------CCcccccccccchhhh----hcc--------cCCCcccccHHHHHH
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV--------GCEVVSLESYFKSEQV----KDF--------KYDDFSSLDLSLLSK 575 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l--------g~~vis~Ddfy~~~~~----~~~--------~~d~p~t~D~~ll~~ 575 (818)
-|++||++||+||||||++.+|-..+ ....+|.||||++++. ++. ..+.+++||+.++.+
T Consensus 30 ~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~e 109 (282)
T KOG2878|consen 30 VPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVE 109 (282)
T ss_pred CcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHH
Confidence 49999999999999999999987655 2668999999999652 111 145789999999999
Q ss_pred HHHHHhcC----Cceecccccccc----cccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHH
Q 003460 576 NISDIRNG----RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRV 647 (818)
Q Consensus 576 ~L~~L~~g----~~v~~P~yD~~~----~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri 647 (818)
+|+.+.++ ..+.+|.||++. |||.+.+.|....|.+++|+|||++++..+. .|..-.++. +
T Consensus 110 vLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~--~~~v~a~d~---------l 178 (282)
T KOG2878|consen 110 VLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLP--ADVVKAVDP---------L 178 (282)
T ss_pred HHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccc--hhheeccCc---------c
Confidence 99998764 469999999995 6888888898888999999999999874331 111000100 0
Q ss_pred hcCccccCcccchhhHHHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccccchhhhhccCChhhhhccc
Q 003460 648 QRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSA 727 (818)
Q Consensus 648 ~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m~~~~v~~~v 727 (818)
+-|....+.. .....+.+.++|...-...---|+++|.||+||||+|+. ++.+|||||||..||
T Consensus 179 ~Gdl~~VN~k------L~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~----------~~~kGMsDEeV~~FV 242 (282)
T KOG2878|consen 179 QGDLEVVNKK------LEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQ----------DGQKGMSDEEVNDFV 242 (282)
T ss_pred cccHHHHhhH------HHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHH----------hhccCCCHHHHHHHH
Confidence 0011111222 223444555565442100001236789999999999873 344799999999999
Q ss_pred cccceee-ecCCCCCCCCCCCCCCeEEEEEeCceeEEE
Q 003460 728 QNFIDMY-LRLPGIPTNGQLTESDCIRVRICEGRFALL 764 (818)
Q Consensus 728 ~~y~~~Y-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (818)
++|||+| +|++.+.+.+++....||.+-++++||.+.
T Consensus 243 ~rYmP~Yk~YL~tl~~~~~lgs~~~L~i~iDenRyp~~ 280 (282)
T KOG2878|consen 243 SRYMPAYKAYLPTLYAEGPLGSDRVLAIDIDENRYPIL 280 (282)
T ss_pred HhhhhHHHhhhhhhhhcCCCCCCeEEEEeecCCccccc
Confidence 9999999 999999999998889999999999998763
No 6
>PTZ00301 uridine kinase; Provisional
Probab=99.97 E-value=3.1e-30 Score=265.47 Aligned_cols=172 Identities=27% Similarity=0.447 Sum_probs=152.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh----C---Ccccccccccchhh------hhcccCCCcccccHHHHHHHHHHHhcC
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV----G---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNG 583 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l----g---~~vis~Ddfy~~~~------~~~~~~d~p~t~D~~ll~~~L~~L~~g 583 (818)
.++|||+|+|||||||||+.|++.+ + +.++++|+||++.. .+..+|++|.++|+++|.+.|..|++|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 5899999999999999999998766 2 34889999998732 234689999999999999999999999
Q ss_pred CceecccccccccccCCCcceeeecCCcEEEEEecccc-hHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--
Q 003460 584 RRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-- 660 (818)
Q Consensus 584 ~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-- 660 (818)
+.+.+|.||+..+++.. ......+.+|||+||+|++ ++.+++++|++|||+++.++++.||+.||..++|++.+.
T Consensus 83 ~~i~~P~yd~~~~~~~~--~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~ 160 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD--TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVI 160 (210)
T ss_pred CcccCCCcccccCCcCC--ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHH
Confidence 99999999999998874 2233456799999999998 489999999999999999999999999999999999876
Q ss_pred hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
.+|...+.|.+.+||+|++.+||+||++.-
T Consensus 161 ~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~ 190 (210)
T PTZ00301 161 EQYEATVRPMYYAYVEPSKVYADIIVPSWK 190 (210)
T ss_pred HHHHHhhcccHHHHcCccccCCcEEEcCCC
Confidence 568888999999999999999999997654
No 7
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.96 E-value=1.4e-29 Score=258.51 Aligned_cols=170 Identities=31% Similarity=0.539 Sum_probs=143.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC---------Ccccccccccchhh--------hhcccCCCcccccHHHHHHHHHHHh
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVG---------CEVVSLESYFKSEQ--------VKDFKYDDFSSLDLSLLSKNISDIR 581 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg---------~~vis~Ddfy~~~~--------~~~~~~d~p~t~D~~ll~~~L~~L~ 581 (818)
||||+|+|||||||||+.|+..|+ ..++++|+||.+.. ...+++++|.++|++++.+.|..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999996 23678999997622 1245789999999999999999999
Q ss_pred cCCceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (818)
Q Consensus 582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (818)
+|+.+..|.||+.++++.+ ......+.+|||+||+|+++ +.+++++|++||++++.++++.|++.||..+||++.+.
T Consensus 81 ~g~~i~~p~yd~~~~~~~~--~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~ 158 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP--WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEE 158 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE--EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHH
T ss_pred CCCccccccccccccccee--eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCccee
Confidence 9999999999999998875 23344578999999999987 67999999999999999999999999999999999886
Q ss_pred -hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
.+.+..++|.|..||+|++.+||+||++.-
T Consensus 159 ~~~~~~~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 159 VIAQYERVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred EEEEeecCChhhhhheeccccccEEEECCCC
Confidence 233448999999999999999999999763
No 8
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.96 E-value=1.8e-29 Score=276.34 Aligned_cols=232 Identities=15% Similarity=0.205 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHcC-----CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhh-hc---cc-----
Q 003460 501 LLSVQAIQALLENK-----GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KD---FK----- 561 (818)
Q Consensus 501 ~~~~~~i~~l~~~~-----~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~-~~---~~----- 561 (818)
.||.+.+..+.... .+|+||||+|++|||||||++.|...+. +.+||+||||++.+. .. .+
T Consensus 191 ~w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~L 270 (460)
T PLN03046 191 IWCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNAL 270 (460)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchh
Confidence 35555666665432 3799999999999999999999988773 668999999986332 11 11
Q ss_pred ---CCCcccccHHHHHHHHHHH----hcCCceeccccccccc----ccCCCccee-eecCCcEEEEEecccch-Hhhhhc
Q 003460 562 ---YDDFSSLDLSLLSKNISDI----RNGRRTKVPIFDLETG----ARSGFKELE-VSEDCGVIIFEGVYALH-PEIRKS 628 (818)
Q Consensus 562 ---~d~p~t~D~~ll~~~L~~L----~~g~~v~~P~yD~~~~----~r~~~~~~~-~~~~~~vvIvEG~~~~~-~~l~~~ 628 (818)
.+.|++||+.++.++|.++ ++|+.+.+|+|||+.+ ||.+.+.|. +..|.+||||||||+++ |.-.+.
T Consensus 271 L~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~ 350 (460)
T PLN03046 271 LELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEV 350 (460)
T ss_pred hcccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHH
Confidence 2468999999999999888 5789999999999984 577655554 45788999999999987 321112
Q ss_pred CCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccc
Q 003460 629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQ 708 (818)
Q Consensus 629 ~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~ 708 (818)
++.. +.+. ...+..+.. |...+...++.+|.-. --| ++++|.||++||+.|+..++.
T Consensus 351 l~~~-----D~~l----------~~VN~~L~~--Y~~~w~~~~D~li~L~--a~d--~~~Vy~WRlqQE~kLr~~gg~-- 407 (460)
T PLN03046 351 VKAV-----DPQL----------EVVNKNLEA--YYDAWDKFIDAWVVIK--IQD--PSCVYQWRLQAEIAMRADGKP-- 407 (460)
T ss_pred hhcc-----ChhH----------HHHHHHHHH--HHHHHHHhhceeEEee--CCC--hhHHHHHHHHHHHHHHHcCCC--
Confidence 2211 1111 111222222 2211111122222110 001 246799999999999966543
Q ss_pred cchhhhhccCChhhhhccccccceee-ecCCCCCCCCCC--CCCCeEEEEEeCceeEE
Q 003460 709 VAYQDILKILDPAKFCSSAQNFIDMY-LRLPGIPTNGQL--TESDCIRVRICEGRFAL 763 (818)
Q Consensus 709 ~~~~~~~~~m~~~~v~~~v~~y~~~Y-l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 763 (818)
||+++||.+||++|||+| +|+|++..+|+. ..+.+|+|.++.+|--+
T Consensus 408 --------GMsdeqV~~FV~~YmPaY~~y~~~L~~~~~~~~~~~~~L~i~Id~~R~~~ 457 (460)
T PLN03046 408 --------GMSDEEVMDFVSRYLPAYKAYLPTLYAEGPSGSDPDHVLVIDIDEERNPI 457 (460)
T ss_pred --------CCCHHHHHHHHHHhhhHHHHHHHHHhccCCcccCCCceEEEEECCCCCcc
Confidence 999999999999999999 999999877664 34678999999988643
No 9
>PLN02348 phosphoribulokinase
Probab=99.96 E-value=2.5e-28 Score=267.91 Aligned_cols=232 Identities=21% Similarity=0.308 Sum_probs=179.2
Q ss_pred HHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC--------------------Ccccccccccchhhh----hcccCCC
Q 003460 509 ALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG--------------------CEVVSLESYFKSEQV----KDFKYDD 564 (818)
Q Consensus 509 ~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg--------------------~~vis~Ddfy~~~~~----~~~~~d~ 564 (818)
....+.++|++|||+|+|||||||||+.|++.|+ +.+|++||||+.... ...+..+
T Consensus 41 ~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ld 120 (395)
T PLN02348 41 VALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALD 120 (395)
T ss_pred HhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCC
Confidence 3444567899999999999999999999999986 258999999875221 1234567
Q ss_pred cccccHHHHHHHHHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHH
Q 003460 565 FSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHL 643 (818)
Q Consensus 565 p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl 643 (818)
|.++|+++|.++|..|++|+.+..|.||+.++...+. ....+.+|||+||+|+++ +.+++++|++|||+++.+.++
T Consensus 121 P~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~---e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl 197 (395)
T PLN02348 121 PRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP---ELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKF 197 (395)
T ss_pred cccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc---EEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHH
Confidence 9999999999999999999999999999999976642 345678999999999987 579999999999999999999
Q ss_pred HHHHhcCccccCcccch-hhHHHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccccchhhhhccCChhh
Q 003460 644 ISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAK 722 (818)
Q Consensus 644 ~Rri~Rd~~~rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m~~~~ 722 (818)
.|+++||..++|++.+. .+.+..+.|.|.+||+|++.+||+||+--. ..+.++. .-.+.|+..-
T Consensus 198 ~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~p-~~l~~~~--------------~~~~~l~vrl 262 (395)
T PLN02348 198 AWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVLP-TQLIPDD--------------NEGKVLRVRL 262 (395)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEecC-CcCCCCC--------------CCCceEEEEE
Confidence 99999999999998876 455667899999999999999999986432 2221100 0011222222
Q ss_pred h-hccccccceeeecCCCCC-----CCCCCCC-CCeEEEEEeC
Q 003460 723 F-CSSAQNFIDMYLRLPGIP-----TNGQLTE-SDCIRVRICE 758 (818)
Q Consensus 723 v-~~~v~~y~~~Yl~~~~~~-----~~~~~~~-~~~~~~~~~~ 758 (818)
+ ++-+..|-|.||+.+|-+ -...++| ...|++...-
T Consensus 263 i~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (395)
T PLN02348 263 IMKEGVKNFDPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGP 305 (395)
T ss_pred EecCCCCCCCcceeeccCCccccccccccccCCCCCeEEEeec
Confidence 2 456788899999998742 1224555 3677777653
No 10
>PLN02796 D-glycerate 3-kinase
Probab=99.96 E-value=3.5e-29 Score=271.16 Aligned_cols=217 Identities=17% Similarity=0.245 Sum_probs=154.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhh-hccc-----------CCCcccccHHHHHHHH
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQV-KDFK-----------YDDFSSLDLSLLSKNI 577 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~-~~~~-----------~d~p~t~D~~ll~~~L 577 (818)
.+|++|||+|++||||||+++.|...+. +..|++||||.+... ...+ .+.|++||++++.++|
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L 177 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGSHDLALGVETL 177 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHHHH
Confidence 4789999999999999999999999884 568999999987432 1111 2458999999999999
Q ss_pred HHHh----cCCceeccccccccc----ccCCCcceee-ecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHH
Q 003460 578 SDIR----NGRRTKVPIFDLETG----ARSGFKELEV-SEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRV 647 (818)
Q Consensus 578 ~~L~----~g~~v~~P~yD~~~~----~r~~~~~~~~-~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri 647 (818)
.+|+ .|+.+.+|+|||+.+ ||.+.+.|.. ..|.+||||||||+++ |.-.+.++. .+.+.
T Consensus 178 ~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~-----~~~~l------ 246 (347)
T PLN02796 178 EALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKA-----VDPQL------ 246 (347)
T ss_pred HHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhc-----cChhH------
Confidence 9998 688999999999984 5766555644 3688999999999987 321111211 01111
Q ss_pred hcCccccCcccchhhHHHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccccchhhhhccCChhhhhccc
Q 003460 648 QRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSA 727 (818)
Q Consensus 648 ~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m~~~~v~~~v 727 (818)
...+..+.. |...+...++.+|.-. |+ -++++|.||++||+.|+..++. |||++||.+||
T Consensus 247 ----~~vN~~L~~--y~~~w~~~~d~~i~L~---a~-~~~~v~~WR~qQE~~l~~~~~~----------gMsde~v~~FV 306 (347)
T PLN02796 247 ----EVVNKNLEA--YYDAWDKLVDSWIVIK---VD-DPSWVYEWRLQAEIAMRAKGKP----------GMSDEEVADFV 306 (347)
T ss_pred ----HHHHHHHHH--HHHHHHHhhceEEEEe---CC-CchHHHHHHHHHHHHHHHhCCC----------CCCHHHHHHHH
Confidence 112222222 2111111222332211 00 1256799999999999977765 99999999999
Q ss_pred cccceee-ecCCCCCCCCCC--CCCCeEEEEEeCceeE
Q 003460 728 QNFIDMY-LRLPGIPTNGQL--TESDCIRVRICEGRFA 762 (818)
Q Consensus 728 ~~y~~~Y-l~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 762 (818)
++|||+| +|+|++...+.. ..+..|+|.++.+|--
T Consensus 307 ~~~mP~y~~y~~~l~~~~~~~~~~~~~L~i~id~~R~~ 344 (347)
T PLN02796 307 SRYMPAYKAYLPGLYAEGPGGSDPDNVLVIEIDENRNP 344 (347)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCCceEEEECCCCCc
Confidence 9999999 999999876654 3367899999998854
No 11
>PRK05439 pantothenate kinase; Provisional
Probab=99.95 E-value=6.7e-28 Score=260.07 Aligned_cols=239 Identities=19% Similarity=0.244 Sum_probs=174.7
Q ss_pred ccccccceecccCCCCCCc--ccccCCCcccceecccCCCCc-chhhhhHHHHHHHHHH-------HH--cCCCCEEEee
Q 003460 455 EPVLATWHFISSDPSHAGS--SVIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQAL-------LE--NKGLPVIVGI 522 (818)
Q Consensus 455 ~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~~l-------~~--~~~~p~iIgI 522 (818)
.....+|+.+..+.+.+|+ ++....++.+.+.+..+.+-| ++.+.+.++....+.+ .. ..+.|++|||
T Consensus 12 ~~~r~~w~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~fl~~~~~~~~~iIgI 91 (311)
T PRK05439 12 EFSREQWAALRDSTPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQFLGKNGQKVPFIIGI 91 (311)
T ss_pred eECHHHHHHHHhcCCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCCCEEEEE
Confidence 5678999955666666666 445555555555543322222 2232222222221111 11 4568999999
Q ss_pred eCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh----hcc-cCCCcccccHHHHHHHHHHHhcCCc-eecc
Q 003460 523 GGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNGRR-TKVP 589 (818)
Q Consensus 523 sG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~----~~~-~~d~p~t~D~~ll~~~L~~L~~g~~-v~~P 589 (818)
+|++||||||+|+.|+..++ +.++++||||++... +.+ .++.|+++|+++|.++|..|++|+. +.+|
T Consensus 92 aG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~v~~P 171 (311)
T PRK05439 92 AGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPNVTAP 171 (311)
T ss_pred ECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCeEEee
Confidence 99999999999999998763 569999999998432 222 3678999999999999999999997 9999
Q ss_pred cccccccccCCCcceeeecCCcEEEEEecccch-Hh------hhhcCCEEEEEEcChhHHHHHHHhcCcccc--------
Q 003460 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PE------IRKSLDLWIAVVGGVHSHLISRVQRDKSRM-------- 654 (818)
Q Consensus 590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~------l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r-------- 654 (818)
.||+.++++.+. ......+.+|||+||++++. +. +++++|++|||+++.+.+..|++.|....|
T Consensus 172 ~Yd~~~~d~~~~-~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp~ 250 (311)
T PRK05439 172 VYSHLIYDIVPG-EKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETAFSDPD 250 (311)
T ss_pred eEEeecCCcCCC-ceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 999999998753 33445678999999999985 44 489999999999999999888888876532
Q ss_pred -------Ccccch------hhHHHhhcchhhhhccccCCcccEEEeCCCCCcc
Q 003460 655 -------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 694 (818)
Q Consensus 655 -------g~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l 694 (818)
|.+.++ .+|.....|++.+||.|++.+||+||..+-+...
T Consensus 251 s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h~i 303 (311)
T PRK05439 251 SYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADHSI 303 (311)
T ss_pred hhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCCce
Confidence 222121 2344567899999999999999999998765543
No 12
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.95 E-value=2e-27 Score=241.30 Aligned_cols=167 Identities=32% Similarity=0.577 Sum_probs=149.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC---eEEeccceecc----------cccCCCCCcccHHHHHHHHHhhhcCCc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKD 126 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~---~vI~~D~~~~~----------~~~~~~~~~~d~~~l~~~L~~l~~~~~ 126 (818)
.+.++|||+|+|||||||+|+.|.+.|+. .+|+.|+||+. ..+++.|+++|++++.++|..|+.|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 44589999999999999999999999984 59999999883 235678999999999999999999999
Q ss_pred cccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHh-
Q 003460 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDS- 203 (818)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~- 203 (818)
+..|.|++..+.+.. ......+..+||+||++++. +.+++++|++|||+++.+.|+.||+.||...+ .+++.++++
T Consensus 86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999986 34556678899999999998 58999999999999999999999999999877 687777765
Q ss_pred ---hchhhhhccCCccccCcEEEECCC
Q 003460 204 ---IFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 204 ---~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
+.|++++||+|++++||+||+-..
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred HHhhChhhhhccCcccccceEEeecCC
Confidence 479999999999999999998763
No 13
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.94 E-value=6e-27 Score=234.75 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=125.9
Q ss_pred ccccccccccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec----cHHHHH
Q 003460 249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGL 324 (818)
Q Consensus 249 ~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L 324 (818)
.|+.+.+...|+|+||++|+++|..++.++ |||+.++++.+|||||+.++.. +.+.|+|+.| +|.++|
T Consensus 23 ~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~lT~Kgp~~~~~~---~~~~E~e~~v~d~~~~~~iL 94 (174)
T TIGR00318 23 KGFKFIKKEFQHDIYFSNPCRDFASTDEAL-----RIRKLTGEKFVTYKGPKIDNES---KTRKEIEFKIEDIENALQIL 94 (174)
T ss_pred cCcccccccceEEEeecCCCcchhhCCcEE-----EEEEcCCcEEEEEeCCccCCcc---eEEEEEEEEECCHHHHHHHH
Confidence 456778889999999999999999888766 9999888999999999876554 9999999999 899999
Q ss_pred HhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecCH---------HHHHHHHHHcCCCCCccchhHHHHHH
Q 003460 325 LDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTNR---------KTVGAEALRMGINGPWITKSYLEMVL 395 (818)
Q Consensus 325 ~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~~~---------~~i~~~~~~Lgl~~~~~~~sYlel~l 395 (818)
.+|||.++++++|.|++|++++++|+||.|+|||. |||||++.+ +.|.++|++||+.++.+++||+||++
T Consensus 95 ~~LG~~~~~~v~K~R~~~~l~~~~i~lD~v~~lG~-FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~ell~ 173 (174)
T TIGR00318 95 KKLGFKKVYEVIKKRRIYQTNELNVSIDDVEGLGF-FLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLELLS 173 (174)
T ss_pred HHCCCeEEEEEEEEEEEEEECCEEEEEEccCCCcc-EEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHHhh
Confidence 99999999999999999999999999999999998 999999832 58999999999955569999999984
No 14
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.94 E-value=3.3e-27 Score=246.69 Aligned_cols=166 Identities=19% Similarity=0.322 Sum_probs=144.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhh-----------hhcccCCC--cccccHHHHHHHHHHH
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQ-----------VKDFKYDD--FSSLDLSLLSKNISDI 580 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~-----------~~~~~~d~--p~t~D~~ll~~~L~~L 580 (818)
||||+|+|||||||++++|++.|+ +.+|+.|+||+... ....||++ |++.|+++|.++|..|
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 599999999999999999998874 57999999999411 12368898 9999999999999999
Q ss_pred hcCCceeccccccc----------ccccCCCcceee-ecCCcEEEEEecccch----HhhhhcCCEEEEEEcChhHHHHH
Q 003460 581 RNGRRTKVPIFDLE----------TGARSGFKELEV-SEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLIS 645 (818)
Q Consensus 581 ~~g~~v~~P~yD~~----------~~~r~~~~~~~~-~~~~~vvIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~R 645 (818)
++|+.+..|.||+. .|.+.+ |.. ..+.+|||+||+|.+. +.+++++|++|||+++.+.++.|
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~---~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~ir 157 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTP---WEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQ 157 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCC---cccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHH
Confidence 99999999999883 244443 332 4688999999999543 68999999999999999999999
Q ss_pred HHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeC
Q 003460 646 RVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 688 (818)
Q Consensus 646 ri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n 688 (818)
|+.||..+||++.+. .+|...+ |.|.+||.|++++||++|+.
T Consensus 158 RI~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr 201 (277)
T cd02029 158 KIHRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQR 201 (277)
T ss_pred HHHhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEec
Confidence 999999999999987 6888877 99999999999999999874
No 15
>COG4240 Predicted kinase [General function prediction only]
Probab=99.93 E-value=2.8e-27 Score=236.08 Aligned_cols=223 Identities=21% Similarity=0.311 Sum_probs=150.9
Q ss_pred HcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C---Ccccccccccchhhhh-----cc-----cCCCcccccHHHHHH
Q 003460 512 ENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G---CEVVSLESYFKSEQVK-----DF-----KYDDFSSLDLSLLSK 575 (818)
Q Consensus 512 ~~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g---~~vis~Ddfy~~~~~~-----~~-----~~d~p~t~D~~ll~~ 575 (818)
...++|+||||+||+||||||+|..|...| | +..+|+||||+++... .. ..+-|||||+.++..
T Consensus 45 qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 45 QERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred hhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 356789999999999999999999988766 2 5679999999995421 11 246799999999999
Q ss_pred HHHHHhcCCc-eecccccccc----cccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEE-EEEcChhHHHHHHHh
Q 003460 576 NISDIRNGRR-TKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWI-AVVGGVHSHLISRVQ 648 (818)
Q Consensus 576 ~L~~L~~g~~-v~~P~yD~~~----~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I-~v~~~~d~rl~Rri~ 648 (818)
+|+.+.+|++ |.+|.|||+. +||.+...|... +.+|+|+||||+++ |--..++.... -+.+..+....+-+
T Consensus 125 VLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~-~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~dv- 202 (300)
T COG4240 125 VLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKF-EVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADV- 202 (300)
T ss_pred HHHHHhcCCCCcccccccchhccCCCCCCCcccceec-ceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHHHH-
Confidence 9999998765 7999999975 688776666543 48999999999986 32111121100 00011111111111
Q ss_pred cCccccCcccchhhHHHhhcchhhhhcccc-CCcccEEEeCCCCCccCccchhhhhccccccchhhhhccCChhhhhccc
Q 003460 649 RDKSRMGCFMSQNDIMMTVFPMFQQHIEPH-LVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKFCSSA 727 (818)
Q Consensus 649 Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~-~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m~~~~v~~~v 727 (818)
+.-...+.|.|++. ..- .-.|+ -|+++|.||+||||.|++.-+ +||+|+||..||
T Consensus 203 ------------N~kLa~Y~pL~~rI-dsLillta~-din~vy~WRlQqEhkliAr~~----------kgmsdeqv~efv 258 (300)
T COG4240 203 ------------NDKLAPYRPLFDRI-DSLILLTAP-DINTVYAWRLQQEHKLIARLA----------KGMSDEQVSEFV 258 (300)
T ss_pred ------------HhhhhhhHHHHHHh-hheeEeccc-chHHHHHHHHHHHHHHHHHHh----------ccCcHHHHHHHH
Confidence 11122344455442 111 01111 347889999999999886544 599999999999
Q ss_pred cccceee-ecCCCCCCCCCCCCCCeEEEEEeCce
Q 003460 728 QNFIDMY-LRLPGIPTNGQLTESDCIRVRICEGR 760 (818)
Q Consensus 728 ~~y~~~Y-l~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (818)
+.|||.| ||+..+..--.+.--.|+.+-.+.+|
T Consensus 259 n~ymrsl~lylq~ls~~~al~~~a~leI~~d~nr 292 (300)
T COG4240 259 NAYMRSLELYLQRLSEWIALDLPAILEIAVDLNR 292 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcceeEEeecccc
Confidence 9999999 99887664322333567777766543
No 16
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.93 E-value=4.5e-26 Score=244.46 Aligned_cols=180 Identities=19% Similarity=0.219 Sum_probs=145.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh-h----cccCCCcccccHHHHHHHHHHHh
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV-K----DFKYDDFSSLDLSLLSKNISDIR 581 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~-~----~~~~d~p~t~D~~ll~~~L~~L~ 581 (818)
.+.|+||||+||+||||||+|+.|+..+. +.++++|+||.+... . ..+++.|+++|.+++.+.+..|+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 46799999999999999999999987763 568999999987432 1 12467899999999999999999
Q ss_pred cCCc-eecccccccccccCCCcceeeecCCcEEEEEecccch-Hh----------hhhcCCEEEEEEcChhHHHHHHHhc
Q 003460 582 NGRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PE----------IRKSLDLWIAVVGGVHSHLISRVQR 649 (818)
Q Consensus 582 ~g~~-v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~----------l~~~~D~~I~v~~~~d~rl~Rri~R 649 (818)
+|+. +.+|.||+.++++.+. ......+.+|||+||||++. +. +++++|++|||++|.+.+..|++.|
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~-~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R 217 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPD-GFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINR 217 (290)
T ss_pred CCCCceecCccccccCCcCCC-CeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHH
Confidence 9986 9999999999998864 33445788999999999985 33 5799999999999999999999988
Q ss_pred Cccc--cC-------------cccch------hhHHHhhcchhhhhccccCCcccEEEeCCCCCcc
Q 003460 650 DKSR--MG-------------CFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVL 694 (818)
Q Consensus 650 d~~~--rg-------------~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l 694 (818)
.... ++ -+.++ ..|.....|++.+||.|++.+||+||..+-+...
T Consensus 218 ~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~h~i 283 (290)
T TIGR00554 218 FLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGANHAV 283 (290)
T ss_pred HHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCCCcE
Confidence 6432 22 11111 2245567899999999999999999998766543
No 17
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.93 E-value=5.4e-26 Score=229.18 Aligned_cols=168 Identities=40% Similarity=0.643 Sum_probs=142.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccchh---hhhcccCCCcccccHHHHHHHHHHHhcCCceeccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFKSE---QVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 590 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~Ddfy~~~---~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~ 590 (818)
+|||+|+|||||||||+.|+..+ ++.+|++||||++. .....+++.|..+|++++.+.|..|++|+.+.+|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999987 36799999999864 12234677788899999999999999999999999
Q ss_pred ccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhH-HHHHHHhcCccccCcccchhhHHHhhcc
Q 003460 591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHS-HLISRVQRDKSRMGCFMSQNDIMMTVFP 669 (818)
Q Consensus 591 yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~-rl~Rri~Rd~~~rg~~~~~~~~~~~v~p 669 (818)
||+.++.+.... .....+.+|||+||+|++++.+++++|++||++++.+. |+.||+.||..+||++.+..-..+.+.|
T Consensus 81 yd~~~~~~~~~~-~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~~~~ 159 (179)
T cd02028 81 YDFRTGKRRGYR-KLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVP 159 (179)
T ss_pred ceeECCccCCCc-eEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhccccc
Confidence 999999887532 23456789999999999999999999999999999998 9999999999999999886322244556
Q ss_pred hhhhhc-cccCCcccEEEe
Q 003460 670 MFQQHI-EPHLVHAHLKIR 687 (818)
Q Consensus 670 ~~~~~I-~p~~~~ADivI~ 687 (818)
+++.++ .|++..||++++
T Consensus 160 ~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 160 SGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred CchhhcCCCchhccceecc
Confidence 666555 678999999875
No 18
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.93 E-value=1.6e-25 Score=232.79 Aligned_cols=173 Identities=19% Similarity=0.263 Sum_probs=140.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh----hcc-cCCCcccccHHHHHHHHHHHhcC-Cc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNG-RR 585 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~----~~~-~~d~p~t~D~~ll~~~L~~L~~g-~~ 585 (818)
||||+|++||||||||+.|+..+. +.++++|+||.+... ... +.+.|+++|.+++.+.|..|++| +.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 689999999999999999999883 568999999987432 112 35679999999999999999994 78
Q ss_pred eecccccccccccCCCcceeeecCCcEEEEEecccchH-h-----hhhcCCEEEEEEcChhHH---HHHHHhcCccccCc
Q 003460 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-E-----IRKSLDLWIAVVGGVHSH---LISRVQRDKSRMGC 656 (818)
Q Consensus 586 v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~-~-----l~~~~D~~I~v~~~~d~r---l~Rri~Rd~~~rg~ 656 (818)
+.+|.||+..+++.+. ......+.+|||+||++++++ . +++++|++|||+++.+.+ +.||..|+..++|+
T Consensus 81 v~~P~yd~~~~~~~~~-~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r 159 (220)
T cd02025 81 VKIPVYSHLTYDVIPG-EKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFS 159 (220)
T ss_pred EEccccceeccccCCC-CceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998864 333356779999999999974 3 899999999999999986 55555556666665
Q ss_pred ccch------------------hhHHHhhcchhhhhccccCCcccEEEeCCCCC
Q 003460 657 FMSQ------------------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (818)
Q Consensus 657 ~~~~------------------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (818)
.... .+|...++|++.+||.|++..||+||+.+.+.
T Consensus 160 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~ 213 (220)
T cd02025 160 DPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADH 213 (220)
T ss_pred CchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCC
Confidence 5542 13566789999999999999999999876443
No 19
>PRK15453 phosphoribulokinase; Provisional
Probab=99.92 E-value=3.4e-25 Score=233.40 Aligned_cols=173 Identities=18% Similarity=0.282 Sum_probs=145.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc-hhh----------hhcccCCC--cccccHHHHHHH
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK-SEQ----------VKDFKYDD--FSSLDLSLLSKN 576 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~-~~~----------~~~~~~d~--p~t~D~~ll~~~ 576 (818)
.++.+|||+|+|||||||+|+.|++.|+ +.++++|+||+ +.. ....||++ |++.|+++|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4678999999999999999999998884 66899999997 311 11237888 999999999999
Q ss_pred HHHHhcCCceeccccccc-----ccccCCC--cceeee-cCCcEEEEEecccch----HhhhhcCCEEEEEEcChhHHHH
Q 003460 577 ISDIRNGRRTKVPIFDLE-----TGARSGF--KELEVS-EDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLI 644 (818)
Q Consensus 577 L~~L~~g~~v~~P~yD~~-----~~~r~~~--~~~~~~-~~~~vvIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~ 644 (818)
|..|++|+.+..|.|++. .+.+.+. ..|+.. ++.+|||+||+|.+. ..+++++|++|||+++.+.++.
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~i 162 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWI 162 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHH
Confidence 999999999999999743 2444421 234333 568999999999874 5789999999999999999999
Q ss_pred HHHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeC
Q 003460 645 SRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 688 (818)
Q Consensus 645 Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n 688 (818)
|++.||..+||++.+. .++.... |.|.+||.|++++||+++..
T Consensus 163 rRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfqr 207 (290)
T PRK15453 163 QKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQR 207 (290)
T ss_pred HHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEEe
Confidence 9999999999999987 6777765 99999999999999998653
No 20
>PTZ00301 uridine kinase; Provisional
Probab=99.92 E-value=8e-25 Score=225.36 Aligned_cols=166 Identities=27% Similarity=0.459 Sum_probs=142.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh----C---CeEEeccceecc----------cccCCCCCcccHHHHHHHHHhhhcC
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI----G---CTLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEG 124 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L----g---~~vI~~D~~~~~----------~~~~~~~~~~d~~~l~~~L~~l~~~ 124 (818)
.++|||+|+|||||||||+.|++.+ | +.++++|+||+. ..+++.|+++|++.+.+.|..++.|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4899999999999999999998766 2 358899999873 3456789999999999999999999
Q ss_pred CccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHH
Q 003460 125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID 202 (818)
Q Consensus 125 ~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~ 202 (818)
+.+..|.|++..+.+... ....++.++||+||+++++ +.+++++|++|||+++.++++.||+.||..++ .+.+.++.
T Consensus 83 ~~i~~P~yd~~~~~~~~~-~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDT-AVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCCc-eEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 999999999999887753 3445566899999999985 88999999999999999999999999998765 56666655
Q ss_pred h----hchhhhhccCCccccCcEEEECCCC
Q 003460 203 S----IFPLFRKHIEPDLHHAQIRINNRFV 228 (818)
Q Consensus 203 ~----~~p~~~~~Iep~~~~ADiII~N~~~ 228 (818)
+ ..|.+.+||+|.+.+||+||++.-.
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~ 191 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWKD 191 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCCc
Confidence 3 5899999999999999999987744
No 21
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.92 E-value=1.8e-24 Score=223.39 Aligned_cols=175 Identities=32% Similarity=0.492 Sum_probs=152.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchhh------hhcccCCCcccccHHHHHHHHHHHhcCC
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGR 584 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg---~~vis~Ddfy~~~~------~~~~~~d~p~t~D~~ll~~~L~~L~~g~ 584 (818)
..++.+|||+|+||||||||++.|+..++ +.++++|+||.... ....++++|.++|++.+.+.|..++.|+
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 82 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGK 82 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCC
Confidence 35789999999999999999999999983 56899999998632 2345688999999999999999999999
Q ss_pred ceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--h
Q 003460 585 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N 661 (818)
Q Consensus 585 ~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~ 661 (818)
.+..|.||+.++.+.. ......+.+++|+||+++++ +.+.+.+|.+|||+++.++++.|++.||...+|.+.+. .
T Consensus 83 ~v~~p~~d~~~~~~~~--~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~ 160 (209)
T PRK05480 83 AIEIPVYDYTEHTRSK--ETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVIN 160 (209)
T ss_pred ccccCcccccccccCC--CeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHH
Confidence 9999999999998764 22234567899999999997 78999999999999999999999999999888987765 4
Q ss_pred hHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 662 ~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
.|...+.|.|..|++|.+..||++|+|+.
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 161 QYLSTVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HHHHhhhhhHHhhccHhhcceeEEecCCC
Confidence 56667889999999999999999999864
No 22
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.91 E-value=4e-24 Score=218.39 Aligned_cols=163 Identities=32% Similarity=0.534 Sum_probs=137.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC---------CeEEeccceecc------------cccCCCCCcccHHHHHHHHHhhh
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIG---------CTLISMENYRVG------------VDEGNDLDSIDFDALVQNLQDLT 122 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg---------~~vI~~D~~~~~------------~~~~~~~~~~d~~~l~~~L~~l~ 122 (818)
+|||+|+|||||||||+.|+..|+ ..++++|+|+.. ...++.|+++|++.+.+.|..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 699999999999999999999996 347788998752 12346789999999999999999
Q ss_pred cCCccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHH
Q 003460 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSL 200 (818)
Q Consensus 123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~ 200 (818)
.|+.+..|.|++..+.+...... ..+.++||+||+++++ +.+++++|++|||+++.++++.|++.||...+ .+.+++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~-~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIII-ISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEE-EES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCcccccccccccccceeeeee-cCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 99999999999999988774333 4467899999999887 67999999999999999999999999998766 678877
Q ss_pred HHhh---chhhhhccCCccccCcEEEECCC
Q 003460 201 IDSI---FPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 201 ~~~~---~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
++++ .|.+.+||+|++++||+||++.-
T Consensus 160 ~~~~~~~~~~~~~~I~p~~~~ADivi~~~~ 189 (194)
T PF00485_consen 160 IAQYERVRPGYERYIEPQKERADIVIPSGP 189 (194)
T ss_dssp HHHHHTHHHHHHHCTGGGGGG-SEEEESCT
T ss_pred EEEeecCChhhhhheeccccccEEEECCCC
Confidence 7765 69999999999999999999874
No 23
>PRK05439 pantothenate kinase; Provisional
Probab=99.91 E-value=9.8e-24 Score=227.81 Aligned_cols=199 Identities=18% Similarity=0.230 Sum_probs=160.6
Q ss_pred cccCCcccccch---hhHHHHHHHHHHHH----------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----
Q 003460 32 LQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG----- 87 (818)
Q Consensus 32 ~~~~~~~~s~~~---~~~~l~~~i~~~~~----------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg----- 87 (818)
++++++.+|.++ +|.++++.|..... ..+.+++|||+|++||||||+|+.|++.++
T Consensus 37 l~~~~~~~~~~~v~~iy~plarli~~~~~~~~~~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~ 116 (311)
T PRK05439 37 LRGLNDPISLEEVAEIYLPLSRLLNLYVAANQRLQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEH 116 (311)
T ss_pred hhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCC
Confidence 678889999776 99999999965442 235689999999999999999999998764
Q ss_pred --CeEEeccceeccc---------ccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCccEEEE
Q 003460 88 --CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIV 155 (818)
Q Consensus 88 --~~vI~~D~~~~~~---------~~~~~~~~~d~~~l~~~L~~l~~~~~-i~~p~~d~~~~~~~~~~~~~~~~~~vVIv 155 (818)
+.+|++|+||... ..++.|+++|++.+.+.|..++.|+. +..|.||+..+++.........+.++||+
T Consensus 117 ~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIV 196 (311)
T PRK05439 117 PKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIV 196 (311)
T ss_pred CceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEE
Confidence 5789999998632 24678999999999999999999987 99999999999987555555567789999
Q ss_pred Eecccch-hh------hhcCCCEEEEEEcCHHHHHHHHHHhccCC----------------CcCHHHHHH--------hh
Q 003460 156 DGTYALD-AR------LRSLLDIRVAVVGGVHFSLISKVQYDIGD----------------SCSLDSLID--------SI 204 (818)
Q Consensus 156 EG~~l~~-~~------l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~----------------~~s~e~~~~--------~~ 204 (818)
||++++. +. +++++|++|||+++.+.+..|++.|...- ..+.+++.+ ..
T Consensus 197 EGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~ 276 (311)
T PRK05439 197 EGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEIN 276 (311)
T ss_pred cCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcc
Confidence 9999885 33 48999999999999999888877776431 123333332 23
Q ss_pred chhhhhccCCccccCcEEEECCCCCC
Q 003460 205 FPLFRKHIEPDLHHAQIRINNRFVSS 230 (818)
Q Consensus 205 ~p~~~~~Iep~~~~ADiII~N~~~~~ 230 (818)
.|++++||.|++.+||+||.++....
T Consensus 277 ~pn~~~~I~Ptk~~ADlIi~~~~~h~ 302 (311)
T PRK05439 277 LPNLEENILPTRERADLILHKGADHS 302 (311)
T ss_pred hhhHHHhccCCCcCCCEEEeCCCCCc
Confidence 69999999999999999999875433
No 24
>PRK07429 phosphoribulokinase; Provisional
Probab=99.90 E-value=1.8e-23 Score=228.63 Aligned_cols=209 Identities=22% Similarity=0.318 Sum_probs=165.2
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchh--hhhccc--CCCcccccHHHHHHHHHHHhcCCc
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSE--QVKDFK--YDDFSSLDLSLLSKNISDIRNGRR 585 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg---~~vis~Ddfy~~~--~~~~~~--~d~p~t~D~~ll~~~L~~L~~g~~ 585 (818)
..++|++|||+|+||||||||++.|+..++ +.++++||||... +..... .-+|.+.|++++.+.+..|++|+.
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~ 83 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQP 83 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCc
Confidence 356899999999999999999999999987 6789999997531 122222 236889999999999999999999
Q ss_pred eecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-hhH
Q 003460 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDI 663 (818)
Q Consensus 586 v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-~~~ 663 (818)
+..|.||+.++...+ +....+.++||+||+++++ ..+++.+|++|||+++.+.++.|+++|+..++|.+.++ .+.
T Consensus 84 I~~P~yd~~~g~~~~---~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~ 160 (327)
T PRK07429 84 ILKPIYNHETGTFDP---PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAE 160 (327)
T ss_pred eecceeecCCCCcCC---cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 999999999987653 2334567999999999765 67889999999999999999999999999999988775 456
Q ss_pred HHhhcchhhhhccccCCcccEEEeCCCCCccCccchhhhhccccccchhhhhccCChhhh-hccccccceeeecCCC
Q 003460 664 MMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILKILDPAKF-CSSAQNFIDMYLRLPG 739 (818)
Q Consensus 664 ~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~~e~~l~~~k~~~~~~~~~~~~~m~~~~v-~~~v~~y~~~Yl~~~~ 739 (818)
+....|.+.+||+|.+..||+||++...--...... .+.|+..-+ ++-+..|-+.|++.++
T Consensus 161 i~~r~pd~~~yI~P~k~~ADiVI~~~p~~~~~~~~~---------------~~~l~v~li~~~~~~~~~~~~~~d~~ 222 (327)
T PRK07429 161 IEAREPDFEAYIRPQRQWADVVIQFLPTQLIDNDEE---------------NKVLRVRLVLRPGIPHPDPAYLFDEG 222 (327)
T ss_pred HHHhCccHhhhhcccccCCCEEEEcCCCcCCCCCCC---------------CcEEEEEEEecCCCCCCCcceeeccc
Confidence 667899999999999999999998753221110110 112332222 3447889999999888
No 25
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.89 E-value=1.3e-22 Score=217.85 Aligned_cols=196 Identities=17% Similarity=0.205 Sum_probs=158.6
Q ss_pred cccCCcccccch---hhHHHHHHHHHHHH----------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----
Q 003460 32 LQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG----- 87 (818)
Q Consensus 32 ~~~~~~~~s~~~---~~~~l~~~i~~~~~----------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg----- 87 (818)
++++++.+|.++ +|.++.+.++.+.. ..+.+++|||+|++||||||+|+.|+..+.
T Consensus 13 ~~~~~~~~~~~~v~~iy~pl~~~~~~~~~~~~~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~ 92 (290)
T TIGR00554 13 LKGINEDLSLEEVATIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLSRWPEH 92 (290)
T ss_pred hhCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCC
Confidence 678899999776 99999999866553 125689999999999999999999988763
Q ss_pred --CeEEeccceeccc---------ccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCccEEEE
Q 003460 88 --CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIV 155 (818)
Q Consensus 88 --~~vI~~D~~~~~~---------~~~~~~~~~d~~~l~~~L~~l~~~~~-i~~p~~d~~~~~~~~~~~~~~~~~~vVIv 155 (818)
+.++++|+||... ...+.|+++|...+.+.+..+..|.. +.+|.||+..+++.........+.+|||+
T Consensus 93 g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIv 172 (290)
T TIGR00554 93 RKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILIL 172 (290)
T ss_pred CceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEE
Confidence 5789999998632 24567899999999999999999985 99999999999987655445567889999
Q ss_pred Eecccch-hh----------hhcCCCEEEEEEcCHHHHHHHHHHhccCC----------------CcCHHHHHH------
Q 003460 156 DGTYALD-AR----------LRSLLDIRVAVVGGVHFSLISKVQYDIGD----------------SCSLDSLID------ 202 (818)
Q Consensus 156 EG~~l~~-~~----------l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~----------------~~s~e~~~~------ 202 (818)
||++++. +. +++++|++|||++|.+.+..|++.|...- ..+.+++.+
T Consensus 173 EGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w 252 (290)
T TIGR00554 173 EGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIW 252 (290)
T ss_pred CCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHH
Confidence 9999986 33 56999999999999999999988885311 122323222
Q ss_pred --hhchhhhhccCCccccCcEEEECCC
Q 003460 203 --SIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 203 --~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
...|++.++|.|++.+||+||+++-
T Consensus 253 ~~~~~~nl~~~I~Ptr~rAdlIl~~~~ 279 (290)
T TIGR00554 253 KEINWLNLKQNILPTRERASLILTKGA 279 (290)
T ss_pred HHcchhhHHhhCCCCcccccEEEecCC
Confidence 1379999999999999999999874
No 26
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.89 E-value=1.1e-22 Score=209.80 Aligned_cols=175 Identities=33% Similarity=0.512 Sum_probs=150.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchhh------hhcccCCCcccccHHHHHHHHHHHhcCC
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGR 584 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg---~~vis~Ddfy~~~~------~~~~~~d~p~t~D~~ll~~~L~~L~~g~ 584 (818)
.++..+|||+|++|||||||++.|+..++ +.++++|+||.... ....+++.|.++|.+++.+.|+.|+.|+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 35678999999999999999999999885 67899999987622 2345678899999999999999999999
Q ss_pred ceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--h
Q 003460 585 RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--N 661 (818)
Q Consensus 585 ~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~ 661 (818)
.+.+|.||+.++++.. ......+.+++|+||++++. +.+.+.+|.+|||+++.+.++.|++.||...+|+..+. .
T Consensus 83 ~v~~p~yd~~~~~~~~--~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~ 160 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPK--ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVID 160 (207)
T ss_pred CEecccceeecCCCCC--ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHH
Confidence 9999999999888743 23334567999999999975 66889999999999999999999999999888888764 4
Q ss_pred hHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 662 DIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 662 ~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
+|....+|.|..|+.|.+..||+||+++-
T Consensus 161 ~~~~~~~~~~~~~i~~~~~~Ad~vi~~~~ 189 (207)
T TIGR00235 161 QYRKTVRPMYEQFVEPTKQYADLIIPEGG 189 (207)
T ss_pred HHHHhhhhhHHHhCcccccccEEEEcCCC
Confidence 66677899999999999999999998753
No 27
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.89 E-value=1e-22 Score=208.44 Aligned_cols=172 Identities=34% Similarity=0.517 Sum_probs=147.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCcccccccccchhh------hhcccCCCcccccHHHHHHHHHHHhcCCceecc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFKSEQ------VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP 589 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l---g~~vis~Ddfy~~~~------~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P 589 (818)
+|||+|++||||||+++.|+..+ ++.++++|+||++.. .....++.|.++|++.+.+.|..++.|+.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999987 378999999997522 123457889999999999999999999999999
Q ss_pred cccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--hhHHHh
Q 003460 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMT 666 (818)
Q Consensus 590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~~~~ 666 (818)
.||++++.+... .. ...+.+++|+||+++++ +.+.+.+|.+|||+++.+.++.|++.||..+||.+.+. ..+...
T Consensus 81 ~~d~~~~~~~~~-~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~ 158 (198)
T cd02023 81 VYDFKTHSRLKE-TV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKF 158 (198)
T ss_pred ccccccCcccCC-ce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHh
Confidence 999999987642 22 34567999999999987 78889999999999999999999999999888987654 456667
Q ss_pred hcchhhhhccccCCcccEEEeCCCCC
Q 003460 667 VFPMFQQHIEPHLVHAHLKIRNDFDP 692 (818)
Q Consensus 667 v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (818)
..+.+..|+++++..||++|+|+-+.
T Consensus 159 ~~~~~~~~i~~~~~~aD~ii~~~~~~ 184 (198)
T cd02023 159 VKPMHEQFIEPTKRYADVIIPRGGDN 184 (198)
T ss_pred hhhhHHHhCccchhceeEEECCCCCc
Confidence 88999999999999999999986443
No 28
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.88 E-value=2e-22 Score=215.85 Aligned_cols=168 Identities=21% Similarity=0.386 Sum_probs=142.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC---Ccccccccccchhh--hhc--ccCCCcccccHHHHHHHHHHHhcCCceecccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQ--VKD--FKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg---~~vis~Ddfy~~~~--~~~--~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~y 591 (818)
+|||+|++|||||||++.|+..++ +.++++|+|++... ... ....+|.+.+++++.+.+..|++|+.+..|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 589999999999999999999874 66999999986421 111 23346888899999999999999999999999
Q ss_pred cccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-hhHHHhhcc
Q 003460 592 DLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMTVFP 669 (818)
Q Consensus 592 D~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-~~~~~~v~p 669 (818)
|+.++...+ .....+.++||+||+++++ +.+++++|++|||+++.+.++.|+++|+..++|.+.+. .+.+....|
T Consensus 81 ~~~~~~~~~---~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~ 157 (273)
T cd02026 81 NHVTGLIDP---PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKP 157 (273)
T ss_pred cccCCCcCC---cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhch
Confidence 999987543 2334567999999999875 68999999999999999999999999999999988775 445556799
Q ss_pred hhhhhccccCCcccEEEeCC
Q 003460 670 MFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 670 ~~~~~I~p~~~~ADivI~n~ 689 (818)
.+.+||+|++.+||+||+..
T Consensus 158 ~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred hHHHHhccccccCcEEEEcc
Confidence 99999999999999999754
No 29
>PLN02348 phosphoribulokinase
Probab=99.88 E-value=4.9e-22 Score=218.40 Aligned_cols=177 Identities=23% Similarity=0.363 Sum_probs=146.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC--------------------CeEEeccceecc-cc-----
Q 003460 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG--------------------CTLISMENYRVG-VD----- 101 (818)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg--------------------~~vI~~D~~~~~-~~----- 101 (818)
+...+.....+.+.+++|||+|+|||||||||+.|++.|| +.+|++|+||.. ..
T Consensus 35 ~~~~~~~~~~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~ 114 (395)
T PLN02348 35 AASSVVVALAADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEK 114 (395)
T ss_pred hhHHHHHhhccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhc
Confidence 4455555556667899999999999999999999999986 258999999752 11
Q ss_pred --cCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcC
Q 003460 102 --EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGG 178 (818)
Q Consensus 102 --~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~ 178 (818)
...+|+++|++.+.+.|..|+.|+.+..|.|++..+....... .++.++||+||.+++. +.+++++|++|||+++
T Consensus 115 g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~e~--I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~ 192 (395)
T PLN02348 115 GVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPEL--IEPPKILVIEGLHPMYDERVRDLLDFSIYLDIS 192 (395)
T ss_pred CCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCcEE--cCCCcEEEEechhhccCccccccCcEEEEEECC
Confidence 1134678999999999999999999999999999987655433 3457899999999987 5788999999999999
Q ss_pred HHHHHHHHHHhccCCC-cCHHHHHH---hhchhhhhccCCccccCcEEEECC
Q 003460 179 VHFSLISKVQYDIGDS-CSLDSLID---SIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 179 ~e~~l~Rri~Rd~~~~-~s~e~~~~---~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
.+.++.|+++||...+ .+.+++.+ .+.|.+.+||+|.+++||+||+--
T Consensus 193 ~dvrl~RRI~RD~~eRG~S~EeV~~~i~ar~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 193 DDVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred HHHHHHHHHHhhHhhcCCCHHHHHHHHHhcCcchhhhcccccccCCEEEEec
Confidence 9999999999998765 46665554 458999999999999999999643
No 30
>PRK06696 uridine kinase; Validated
Probab=99.88 E-value=7.1e-22 Score=206.24 Aligned_cols=177 Identities=20% Similarity=0.253 Sum_probs=140.8
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---CC--cccccccccchhhh-hcccCCCc-----ccccHHHHHHHHHHHh
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GC--EVVSLESYFKSEQV-KDFKYDDF-----SSLDLSLLSKNISDIR 581 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g~--~vis~Ddfy~~~~~-~~~~~d~p-----~t~D~~ll~~~L~~L~ 581 (818)
..++|++|||+|+|||||||||+.|++.| |. .++|+||||.+... ...++++| +++|+++|.+.+..+.
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l 97 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL 97 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence 45689999999999999999999999998 44 35679999998543 23344444 7899999999887743
Q ss_pred -cCC--ceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCccc
Q 003460 582 -NGR--RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (818)
Q Consensus 582 -~g~--~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~ 658 (818)
.+. .+..|.||+..+..... ......+.++||+||++++.+.+.+.+|.+||++++.++++.|++.||...+|...
T Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~ 176 (223)
T PRK06696 98 GPNGDRQYRTASHDLKTDIPVHN-PPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYE 176 (223)
T ss_pred cCCCceeEeeeeeccccCcccCC-CceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCch
Confidence 433 47788999988765532 22333567899999999998999999999999999999999999999988888633
Q ss_pred ch-hhHHHhhcchhhhhcccc--CCcccEEEeCCC
Q 003460 659 SQ-NDIMMTVFPMFQQHIEPH--LVHAHLKIRNDF 690 (818)
Q Consensus 659 ~~-~~~~~~v~p~~~~~I~p~--~~~ADivI~n~~ 690 (818)
+. ..++..+.|.+..|+.+. +++||+||+|+-
T Consensus 177 ~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 177 EAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 32 567777889888887655 788999999874
No 31
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=99.87 E-value=5.8e-22 Score=198.09 Aligned_cols=134 Identities=24% Similarity=0.304 Sum_probs=121.5
Q ss_pred ccccccccccceeeccCCCCCcchhhhccCCeeeEeeeC--CEEEEEEcceeecCCCcccCceeEEEEec----cHHHHH
Q 003460 251 SAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGL 324 (818)
Q Consensus 251 ~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~--~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L 324 (818)
........|+|+||+.|+++++.++.++ |||..+ +++.+|||||...+ .+ +.+.|+|+.| +|.++|
T Consensus 23 ~~~~~~~~q~d~Yfd~p~~~l~~~~~~L-----RiR~~~~~~~~~lT~K~~~~~~-~~--~~~~E~e~~v~~~~~~~~iL 94 (169)
T cd07890 23 GAEGGREFQEDIYFDHPDRDLAATDEAL-----RLRRMGDSGKTLLTYKGPKLDG-GP--KVREEIETEVADPEAMKEIL 94 (169)
T ss_pred cccccceeEeEEEEcCCchhHHhCCCcE-----EEEEeCCCCcEEEEEECCCCCC-Cc--cceEEEEEecCCHHHHHHHH
Confidence 3445778999999999999999888887 999987 88999999987654 33 8999999999 899999
Q ss_pred HhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec------CHHHHHHHHHHcCCCCC-ccchhHHHH
Q 003460 325 LDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT------NRKTVGAEALRMGINGP-WITKSYLEM 393 (818)
Q Consensus 325 ~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~------~~~~i~~~~~~Lgl~~~-~~~~sYlel 393 (818)
..|||.+..+++|.|.+|.+++++|+||.|+|||. |+|||++ ..+.+.++++.||+.+. .+++||++|
T Consensus 95 ~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~~ 169 (169)
T cd07890 95 ERLGFGPVGRVKKEREIYLLGQTRVHLDRVEGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLEL 169 (169)
T ss_pred HHcCCceeEEEEEEEEEEEECCEEEEEEccCCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhcC
Confidence 99999999999999999999999999999999999 9999999 45899999999999885 499999975
No 32
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.86 E-value=1.3e-21 Score=204.80 Aligned_cols=161 Identities=15% Similarity=0.243 Sum_probs=134.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec----ccc-----------cCCC--CCcccHHHHHHHHHhh
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV----GVD-----------EGND--LDSIDFDALVQNLQDL 121 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~----~~~-----------~~~~--~~~~d~~~l~~~L~~l 121 (818)
+|||+|+|||||||+++.|++.++ +.+|+.|+||+ ++. ..+. |+++|++.|.+.|..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999998774 67899999988 111 1234 8999999999999999
Q ss_pred hcCCccccccchhh----------hhccccccccccCCccEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHHHHH
Q 003460 122 TEGKDTLIPMFDYQ----------QKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKV 187 (818)
Q Consensus 122 ~~~~~i~~p~~d~~----------~~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~e~~l~Rri 187 (818)
.+|+.+..|.|++. .+.+..+... ..+.+++|+||.+.+. ..+++++|++|||+++.++++.||+
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~-~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDL-PEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcccc-cCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 99999999999773 2333333322 3567899999998433 6899999999999999999999999
Q ss_pred HhccCCC-cCHHHHHHhh---chhhhhccCCccccCcEEEEC
Q 003460 188 QYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRINN 225 (818)
Q Consensus 188 ~Rd~~~~-~s~e~~~~~~---~p~~~~~Iep~~~~ADiII~N 225 (818)
.||..+| .+.+.+++++ .|.|.+||+|.+++||+++.-
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrmpdy~~yI~PQ~~~tDI~fqr 201 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRMPDYINYICPQFSRTDINFQR 201 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhCchHHhhCCcccccCcEEEec
Confidence 9999888 6888888754 699999999999999999854
No 33
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.86 E-value=1.2e-21 Score=197.62 Aligned_cols=161 Identities=43% Similarity=0.635 Sum_probs=135.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccceeccc-------ccCCCCCcccHHHHHHHHHhhhcCCcccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGV-------DEGNDLDSIDFDALVQNLQDLTEGKDTLIPM 131 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~~-------~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~ 131 (818)
+|||+|++||||||+|+.|++.+ ++.+|++|+||+.. ...+.+..+|++.+.+.|..+..++.+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999987 46899999999743 1123445689999999999999999999999
Q ss_pred chhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHH-HHHHHHHhccCCC-cCHHHHHHhh--chh
Q 003460 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHF-SLISKVQYDIGDS-CSLDSLIDSI--FPL 207 (818)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~-~l~Rri~Rd~~~~-~s~e~~~~~~--~p~ 207 (818)
|++..+.+........++..+||+||++++++.+++++|++|||+++.+. ++.||+.||...+ .+.++.+.++ .|.
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~~~~~~ 160 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSVPS 160 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhcccccC
Confidence 99999988765445667788999999999999999999999999999998 9999999998777 5777766643 566
Q ss_pred hhhcc-CCccccCcEEEE
Q 003460 208 FRKHI-EPDLHHAQIRIN 224 (818)
Q Consensus 208 ~~~~I-ep~~~~ADiII~ 224 (818)
++.++ .|.++.||+|++
T Consensus 161 ~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 161 GEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred chhhcCCCchhccceecc
Confidence 66555 678899999874
No 34
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.86 E-value=1.7e-21 Score=196.80 Aligned_cols=156 Identities=22% Similarity=0.282 Sum_probs=122.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhh------hcccCCCcccccHHHHHHHHHHHhcCCceecccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQV------KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~~~~~------~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~y 591 (818)
+|||+|+|||||||+|+.|++.+ ++.+||+||||++... +..+|++|+++|+++|.+.|..|++|+.+..|.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 58999999999999999999998 6999999999998431 3358999999999999999999999987666666
Q ss_pred cccccccCCC------------cceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCc-c
Q 003460 592 DLETGARSGF------------KELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-F 657 (818)
Q Consensus 592 D~~~~~r~~~------------~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~-~ 657 (818)
+....+.... .......+.++||+||.++++ +.+++++|++||++++.+++++|++.||...-.. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 5554332110 112334667899999999987 7999999999999999999999999998443111 1
Q ss_pred -cch-hhHHHhhcchhhhh
Q 003460 658 -MSQ-NDIMMTVFPMFQQH 674 (818)
Q Consensus 658 -~~~-~~~~~~v~p~~~~~ 674 (818)
... ..+...|+|+|.+.
T Consensus 161 w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCCCCcccccccchhHHHH
Confidence 111 34556799999875
No 35
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.85 E-value=3.8e-21 Score=200.13 Aligned_cols=165 Identities=18% Similarity=0.265 Sum_probs=130.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC-------CeEEeccceecccc---------cCCCCCcccHHHHHHHHHhhhc-CCc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVGVD---------EGNDLDSIDFDALVQNLQDLTE-GKD 126 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~~~---------~~~~~~~~d~~~l~~~L~~l~~-~~~ 126 (818)
+|||+|++||||||+|+.|+..+. +.+|++|+||.... ..+.|+++|.+.+.+.|..+.. ++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 589999999999999999999882 57899999986421 2456899999999999999998 468
Q ss_pred cccccchhhhhccccccccccCCccEEEEEecccchhh------hhcCCCEEEEEEcCHHHHHHHHHHhccC---CC---
Q 003460 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDAR------LRSLLDIRVAVVGGVHFSLISKVQYDIG---DS--- 194 (818)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~------l~~~~D~~I~Vda~~e~~l~Rri~Rd~~---~~--- 194 (818)
+..|.|++..+++........++.++||+||+++++.. +++++|++|||+++.+.+..|+..|... .+
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887654443566789999999999853 8999999999999999975555444322 11
Q ss_pred ----------cCHHHHH--------HhhchhhhhccCCccccCcEEEECCCC
Q 003460 195 ----------CSLDSLI--------DSIFPLFRKHIEPDLHHAQIRINNRFV 228 (818)
Q Consensus 195 ----------~s~e~~~--------~~~~p~~~~~Iep~~~~ADiII~N~~~ 228 (818)
.+.+++. +...|++++||.|++.+||+||..+..
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~ 212 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGAD 212 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCC
Confidence 1112211 134799999999999999999987743
No 36
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.84 E-value=1.4e-20 Score=194.41 Aligned_cols=167 Identities=31% Similarity=0.533 Sum_probs=140.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC---CeEEeccceeccc----------ccCCCCCcccHHHHHHHHHhhhcCCc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGV----------DEGNDLDSIDFDALVQNLQDLTEGKD 126 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~----------~~~~~~~~~d~~~l~~~L~~l~~~~~ 126 (818)
.++.+|||+|++|||||||++.|+..++ +.++++|+||... ...+.+++++++.+.+.|..+..+..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 83 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKA 83 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999999883 6789999997632 12345788999999999999999999
Q ss_pred cccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHh-
Q 003460 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDS- 203 (818)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~- 203 (818)
+..|.|++..+.+... .....+..++|+||+++++ +.+.+++|.+|||++|.++++.|++.|+...+ .+.+++.++
T Consensus 84 v~~p~~d~~~~~~~~~-~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~ 162 (209)
T PRK05480 84 IEIPVYDYTEHTRSKE-TIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQY 162 (209)
T ss_pred cccCcccccccccCCC-eEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHH
Confidence 9999999998877643 2334556799999999997 68889999999999999999999999997654 466655543
Q ss_pred ---hchhhhhccCCccccCcEEEECCC
Q 003460 204 ---IFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 204 ---~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
..|.|.++++|.+++||+||+|+.
T Consensus 163 ~~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 163 LSTVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HHhhhhhHHhhccHhhcceeEEecCCC
Confidence 468999999999999999999874
No 37
>PRK07667 uridine kinase; Provisional
Probab=99.84 E-value=2.6e-20 Score=190.13 Aligned_cols=170 Identities=18% Similarity=0.298 Sum_probs=131.4
Q ss_pred HHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhhh-cccCCC-----cccccHHHHHHH-
Q 003460 509 ALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVK-DFKYDD-----FSSLDLSLLSKN- 576 (818)
Q Consensus 509 ~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~~-~~~~d~-----p~t~D~~ll~~~- 576 (818)
.+....+.+++|||+|++||||||+|+.|++.++ +.++|+||||.+.... ..++.. ..++|++.|.+.
T Consensus 9 ~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v 88 (193)
T PRK07667 9 IMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKF 88 (193)
T ss_pred HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHH
Confidence 3344556779999999999999999999999873 5699999999874421 111111 235788888764
Q ss_pred HHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCc
Q 003460 577 ISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 656 (818)
Q Consensus 577 L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~ 656 (818)
+..|+.++.+.+|.||+..+.+.. .....++.+++|+||++++++.+.+.+|.+|||++|.+.+++|++.|+. .
T Consensus 89 ~~~L~~~~~i~~P~~d~~~~~~~~--~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~----~ 162 (193)
T PRK07667 89 FRKLQNETKLTLPFYHDETDTCEM--KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQ----K 162 (193)
T ss_pred HHhhcCCCeEEEeeeccccccccc--cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccH----h
Confidence 688999999999999999877653 2222355799999999998888999999999999999999999998762 2
Q ss_pred ccchhhHHHhhcchhhhhcc---ccCCcccEEEe
Q 003460 657 FMSQNDIMMTVFPMFQQHIE---PHLVHAHLKIR 687 (818)
Q Consensus 657 ~~~~~~~~~~v~p~~~~~I~---p~~~~ADivI~ 687 (818)
+. .++...+.|.+..|+. | +..||+||+
T Consensus 163 ~~--~~~~~r~~~a~~~y~~~~~~-~~~ad~i~~ 193 (193)
T PRK07667 163 NL--SKFKNRYWKAEDYYLETESP-KDRADLVIK 193 (193)
T ss_pred HH--HHHHHHhHHHHHHHHhhcCh-HhhCcEEeC
Confidence 22 3556566688888865 5 788999874
No 38
>PRK15453 phosphoribulokinase; Provisional
Probab=99.83 E-value=6.4e-20 Score=193.61 Aligned_cols=164 Identities=16% Similarity=0.280 Sum_probs=134.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec-c---c-----------ccCCC--CCcccHHHHHHH
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV-G---V-----------DEGND--LDSIDFDALVQN 117 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~-~---~-----------~~~~~--~~~~d~~~l~~~ 117 (818)
.++.+|||+|+|||||||+|+.|++.++ +.+|+.|+||+ . + ...+. |++.|++.|.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~ 82 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQL 82 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 4568999999999999999999998774 67899999986 2 1 12334 899999999999
Q ss_pred HHhhhcCCccccccchhhh-----hccc-----cccccccCCccEEEEEecccch----hhhhcCCCEEEEEEcCHHHHH
Q 003460 118 LQDLTEGKDTLIPMFDYQQ-----KNRI-----GSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSL 183 (818)
Q Consensus 118 L~~l~~~~~i~~p~~d~~~-----~~~~-----~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~e~~l 183 (818)
|..+..++.+..|.|++.. +.+. +++.+ .++.++||+||.+.+. ..++.++|++|||+++.++++
T Consensus 83 l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i-~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~ 161 (290)
T PRK15453 83 FREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPL-PEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEW 161 (290)
T ss_pred HHHHhcCCCcceeeccccccccccCCCCCCccCCceEe-cCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHH
Confidence 9999998888888776321 2222 12222 2567899999998874 578999999999999999999
Q ss_pred HHHHHhccCCC-cCHHHHHHhh---chhhhhccCCccccCcEEEE
Q 003460 184 ISKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQIRIN 224 (818)
Q Consensus 184 ~Rri~Rd~~~~-~s~e~~~~~~---~p~~~~~Iep~~~~ADiII~ 224 (818)
.|++.||..+| .+.+.+++++ +|.|.+||.|.+.+||+++.
T Consensus 162 irRI~RD~~ERGrs~EsVi~qilrrmPdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 162 IQKIHRDTSERGYSREAVMDTILRRMPDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHHHhhhHhhCCCHHHHHHHHHHhCChHhhhCCCCcccCcEEEE
Confidence 99999999888 6888887753 79999999999999999774
No 39
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.82 E-value=5.3e-20 Score=191.31 Aligned_cols=201 Identities=19% Similarity=0.239 Sum_probs=147.4
Q ss_pred ccccccceecccCCCCCCc--ccccCCCcccceecccCCCCc-chhhhhHHHHHHHHHH-------H--HcCCCCEEEee
Q 003460 455 EPVLATWHFISSDPSHAGS--SVIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQAL-------L--ENKGLPVIVGI 522 (818)
Q Consensus 455 ~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~~l-------~--~~~~~p~iIgI 522 (818)
....++|+.++.+.+.+++ ++.+..++.+.+.+..+.+.| ++.+-+...+.+.+.+ . .+...|+||||
T Consensus 8 ~~~~~~w~~~~~~~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~pfIIgi 87 (283)
T COG1072 8 IFSREQWAALRASTPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRPFIIGI 87 (283)
T ss_pred EechhhhhhhhhcCccccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEe
Confidence 4678899966777777777 444545555544443222222 1111111111111111 1 24568999999
Q ss_pred eCCCCccHHHHHHHHHHHhC-------Ccccccccccchhh----hhccc-CCCcccccHHHHHHHHHHHhcCCc-eecc
Q 003460 523 GGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQ----VKDFK-YDDFSSLDLSLLSKNISDIRNGRR-TKVP 589 (818)
Q Consensus 523 sG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~----~~~~~-~d~p~t~D~~ll~~~L~~L~~g~~-v~~P 589 (818)
+|+.|+||||+|+.|+..+. +.++.||.|+.+.. .+-.+ .+-|+++|...|.+.+..+++|++ +.+|
T Consensus 88 aGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~~~~v~aP 167 (283)
T COG1072 88 AGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAGKPDVFAP 167 (283)
T ss_pred ccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcCCCccccc
Confidence 99999999999999999873 66899999988743 22222 467999999999999999998877 9999
Q ss_pred cccccccccCCCcceeeecCCcEEEEEecccch---H--hhhhcCCEEEEEEcChhHHHHHHHhcCccccCc
Q 003460 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH---P--EIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 656 (818)
Q Consensus 590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~--~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~ 656 (818)
.||+.+++..+. ...+..+.+|||+||++++. | .+.+.+|+.||||++.+.-.+|.+.|....+-.
T Consensus 168 vysh~~yD~vpd-~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g~~ 238 (283)
T COG1072 168 VYSHLIYDPVPD-AFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFGLT 238 (283)
T ss_pred cccccccccCCC-ceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhcccc
Confidence 999999998874 55566778999999999985 3 478899999999999999999999998765433
No 40
>PRK06696 uridine kinase; Validated
Probab=99.82 E-value=2.1e-19 Score=187.64 Aligned_cols=170 Identities=23% Similarity=0.264 Sum_probs=131.0
Q ss_pred hcCCcEEEEEeCCCCCcHHHHHHHHHHHh---CCeE--Eeccceeccccc-----CCC-----CCcccHHHHHHHHHhhh
Q 003460 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI---GCTL--ISMENYRVGVDE-----GND-----LDSIDFDALVQNLQDLT 122 (818)
Q Consensus 58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g~~v--I~~D~~~~~~~~-----~~~-----~~~~d~~~l~~~L~~l~ 122 (818)
..+++++|||+|++||||||||+.|++.| |..+ +++|+||.+... ... .+++|++.|.+.+....
T Consensus 18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l 97 (223)
T PRK06696 18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPL 97 (223)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhc
Confidence 45678999999999999999999999999 5444 569999885421 112 26899999999888743
Q ss_pred -cCC--ccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCc----
Q 003460 123 -EGK--DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC---- 195 (818)
Q Consensus 123 -~~~--~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~---- 195 (818)
.+. .+..|.|++..+..........++..+||+||++++++.+..++|++|||+++.+.+++|++.|+...++
T Consensus 98 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~~~~ 177 (223)
T PRK06696 98 GPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSYEE 177 (223)
T ss_pred cCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCCchH
Confidence 332 3455678887766543333444567799999999999999999999999999999999999999954443
Q ss_pred CHHHHHHhhchhhhhccCCc--cccCcEEEECCC
Q 003460 196 SLDSLIDSIFPLFRKHIEPD--LHHAQIRINNRF 227 (818)
Q Consensus 196 s~e~~~~~~~p~~~~~Iep~--~~~ADiII~N~~ 227 (818)
....+.+++.|.++.|+.+. +++||+||+|+.
T Consensus 178 ~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 178 AEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 23445567788888887544 899999999984
No 41
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.82 E-value=2.6e-19 Score=187.67 Aligned_cols=183 Identities=20% Similarity=0.238 Sum_probs=142.5
Q ss_pred HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccc-cccccccchhhh-hc----ccCCCcccccHHHH
Q 003460 505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEV-VSLESYFKSEQV-KD----FKYDDFSSLDLSLL 573 (818)
Q Consensus 505 ~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~v-is~Ddfy~~~~~-~~----~~~d~p~t~D~~ll 573 (818)
..+..+....+++.+|||+|++|||||||++.|+..+. +.+ +++|+||.+... .. ..++.|.++|.+.+
T Consensus 21 ~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~ 100 (229)
T PRK09270 21 RRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGL 100 (229)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHH
Confidence 33444445667899999999999999999999999884 235 999999987432 11 13467899999999
Q ss_pred HHHHHHHhcCC-ceecccccccccccCCCcceeeecCCcEEEEEecccch-----HhhhhcCCEEEEEEcChhHHHHHHH
Q 003460 574 SKNISDIRNGR-RTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLISRV 647 (818)
Q Consensus 574 ~~~L~~L~~g~-~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~Rri 647 (818)
.+.+..++.|+ .+.+|.||+..+..... ........+++|+||.+++. +.+.+.+|..||++++.+.++.|.+
T Consensus 101 ~~~l~~l~~~~~~i~~P~yD~~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~ 179 (229)
T PRK09270 101 AALLRRLRAGDDEVYWPVFDRSLEDPVAD-AIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLV 179 (229)
T ss_pred HHHHHHHHcCCCceecccCCcccCCCCCC-ceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHH
Confidence 99999999987 89999999998776542 22222356899999999875 3677899999999999999999999
Q ss_pred hcCccccCcccch-hhHH-HhhcchhhhhccccCCcccEEEeCCC
Q 003460 648 QRDKSRMGCFMSQ-NDIM-MTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 648 ~Rd~~~rg~~~~~-~~~~-~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
.|+. ++|.+.+. .+.+ ....|.+ .||.|.+..||+||+|+-
T Consensus 180 ~R~~-~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 180 ARKL-AGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTA 222 (229)
T ss_pred HHHH-hcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecC
Confidence 9963 46766554 2333 3456666 689999999999999863
No 42
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.81 E-value=1.4e-19 Score=185.19 Aligned_cols=164 Identities=32% Similarity=0.548 Sum_probs=136.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccceecccc----------cCCCCCcccHHHHHHHHHhhhcCCccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGKDTLIP 130 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~~----------~~~~~~~~d~~~l~~~L~~l~~~~~i~~p 130 (818)
+|||+|++||||||+++.|+..+ ++.++++|+||..+. .+..+.+++++.+.+.|..+..++.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999987 378999999986432 23456788999999999999999999999
Q ss_pred cchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHH----hh
Q 003460 131 MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID----SI 204 (818)
Q Consensus 131 ~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~----~~ 204 (818)
.|++..+.+..... ...+..++|+||.+++. +.+.+.+|.+|||+++.+.++.|++.|+...+ .+.++..+ +.
T Consensus 81 ~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKETV-TVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCce-ecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 99999988764333 45567899999999987 67888999999999999999999999997555 35544433 44
Q ss_pred chhhhhccCCccccCcEEEECCCC
Q 003460 205 FPLFRKHIEPDLHHAQIRINNRFV 228 (818)
Q Consensus 205 ~p~~~~~Iep~~~~ADiII~N~~~ 228 (818)
.+.+..|+++++++||+||+|+-.
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~~ 183 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGGD 183 (198)
T ss_pred hhhHHHhCccchhceeEEECCCCC
Confidence 689999999999999999998753
No 43
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.80 E-value=4.4e-19 Score=183.07 Aligned_cols=168 Identities=33% Similarity=0.543 Sum_probs=137.6
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhC---CeEEeccceecccc----------cCCCCCcccHHHHHHHHHhhhcCC
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGK 125 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~~----------~~~~~~~~d~~~l~~~L~~l~~~~ 125 (818)
++...+|||+|++|||||||++.|+..++ +.++++|+|+.... ..+.+++++.+.+.+.|..+..|.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~ 82 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGS 82 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCC
Confidence 34568999999999999999999999875 67899999875311 233567889999999999999999
Q ss_pred ccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHH-
Q 003460 126 DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLID- 202 (818)
Q Consensus 126 ~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~- 202 (818)
.+.+|.|++..+.+.. .....++..++|+||.+++. +.+.+.+|.+|||+++.+.++.|++.|+...+ .+.+....
T Consensus 83 ~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~ 161 (207)
T TIGR00235 83 PIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQ 161 (207)
T ss_pred CEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 9999999998777643 33445567899999999965 66888999999999999999999999997654 35544444
Q ss_pred ---hhchhhhhccCCccccCcEEEECCC
Q 003460 203 ---SIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 203 ---~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
...|.+..++++.+.+||+||+|+-
T Consensus 162 ~~~~~~~~~~~~i~~~~~~Ad~vi~~~~ 189 (207)
T TIGR00235 162 YRKTVRPMYEQFVEPTKQYADLIIPEGG 189 (207)
T ss_pred HHHhhhhhHHHhCcccccccEEEEcCCC
Confidence 3468899999999999999999864
No 44
>PRK07667 uridine kinase; Provisional
Probab=99.79 E-value=4.8e-19 Score=180.84 Aligned_cols=168 Identities=15% Similarity=0.230 Sum_probs=132.4
Q ss_pred HHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceeccccc---CCCC-------CcccHHHHHHH
Q 003460 53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDE---GNDL-------DSIDFDALVQN 117 (818)
Q Consensus 53 ~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~---~~~~-------~~~d~~~l~~~ 117 (818)
..+.+.++.+++|||+|++||||||+|+.|++.++ +.++++|+|+..... .+.+ ..+|.+.+.+.
T Consensus 8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~ 87 (193)
T PRK07667 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQK 87 (193)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHH
Confidence 33344556679999999999999999999999873 569999999874321 1111 24677777765
Q ss_pred -HHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcC
Q 003460 118 -LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS 196 (818)
Q Consensus 118 -L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s 196 (818)
+..+..++.+.+|.|++..+..... ....++..++|+||+++++..+.+++|.+|||++|.+.+++|.+.|+. .+
T Consensus 88 v~~~L~~~~~i~~P~~d~~~~~~~~~-~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~---~~ 163 (193)
T PRK07667 88 FFRKLQNETKLTLPFYHDETDTCEMK-KVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEETQ---KN 163 (193)
T ss_pred HHHhhcCCCeEEEeeecccccccccc-ceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhcccH---hH
Confidence 4678888899999999988765532 233455689999999999988999999999999999999999998762 46
Q ss_pred HHHHHHhhchhhhhccC--CccccCcEEEE
Q 003460 197 LDSLIDSIFPLFRKHIE--PDLHHAQIRIN 224 (818)
Q Consensus 197 ~e~~~~~~~p~~~~~Ie--p~~~~ADiII~ 224 (818)
.+.+.++++|.++.|++ .++.+||+|++
T Consensus 164 ~~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 164 LSKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 67788888899999985 24889999984
No 45
>PRK07429 phosphoribulokinase; Provisional
Probab=99.79 E-value=5e-19 Score=193.76 Aligned_cols=166 Identities=23% Similarity=0.383 Sum_probs=136.9
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhC---CeEEeccceeccc----c----cCCCCCcccHHHHHHHHHhhhcCCcc
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRVGV----D----EGNDLDSIDFDALVQNLQDLTEGKDT 127 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~~~----~----~~~~~~~~d~~~l~~~L~~l~~~~~i 127 (818)
..++++|||+|++||||||+++.|+..++ +.++++|+|+... . ....|++.+++.+.+.+..+..++.+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 46789999999999999999999999987 6789999996410 0 01235678888999999999999999
Q ss_pred ccccchhhhhccccccccccCCccEEEEEecccc-hhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHH---H
Q 003460 128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLI---D 202 (818)
Q Consensus 128 ~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~-~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~---~ 202 (818)
.+|.|++..+...... ...+.++||+||.+++ ...+++++|++|||+++.++++.|+++|+...+ .+.+++. +
T Consensus 85 ~~P~yd~~~g~~~~~~--~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~ 162 (327)
T PRK07429 85 LKPIYNHETGTFDPPE--YIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIE 162 (327)
T ss_pred ecceeecCCCCcCCcE--ecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 9999999988665432 2345679999999855 467889999999999999999999999997765 4555544 4
Q ss_pred hhchhhhhccCCccccCcEEEECC
Q 003460 203 SIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 203 ~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
.+.|.+.+||+|.++.||+||++.
T Consensus 163 ~r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 163 AREPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HhCccHhhhhcccccCCCEEEEcC
Confidence 568999999999999999999987
No 46
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.79 E-value=7.7e-19 Score=182.66 Aligned_cols=165 Identities=20% Similarity=0.286 Sum_probs=142.2
Q ss_pred cccCCcccccch---hhHHHHHHHHHHHH----------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----
Q 003460 32 LQSLPVHASFDH---GYYLLVKSIQELRE----------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG----- 87 (818)
Q Consensus 32 ~~~~~~~~s~~~---~~~~l~~~i~~~~~----------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg----- 87 (818)
+.+++.++|+++ +|.++++.++.+.. +...+++|||+|++|+||||+|+.|+..+.
T Consensus 33 ~~~ln~~~~l~eV~~iylpL~~l~~~~~~~~~~~~~~~~~~l~~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 33 LRGLNEPISLDEVEDIYLPLSRLLQLYVEARERLFAELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 467888999876 99999998865542 235689999999999999999999999873
Q ss_pred --CeEEeccceecc---------cccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCccEEEE
Q 003460 88 --CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIV 155 (818)
Q Consensus 88 --~~vI~~D~~~~~---------~~~~~~~~~~d~~~l~~~L~~l~~~~~-i~~p~~d~~~~~~~~~~~~~~~~~~vVIv 155 (818)
+.+|.||.|+.. +..++.|++||..++.+.+..++.+.+ +.+|.|++..++.++......+..+++|+
T Consensus 113 ~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~ 192 (283)
T COG1072 113 PKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIV 192 (283)
T ss_pred CceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEE
Confidence 678999999542 345789999999999999999998766 99999999999999888888888999999
Q ss_pred Eecccchh-----hhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcC
Q 003460 156 DGTYALDA-----RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS 196 (818)
Q Consensus 156 EG~~l~~~-----~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s 196 (818)
||.+++.. .+.++||++||||++.+...+|.+.|-...+..
T Consensus 193 EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl~~g~~ 238 (283)
T COG1072 193 EGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFLKFGLT 238 (283)
T ss_pred echhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHHhcccc
Confidence 99999972 577999999999999999999999998766633
No 47
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.77 E-value=6.9e-18 Score=176.92 Aligned_cols=183 Identities=20% Similarity=0.319 Sum_probs=143.8
Q ss_pred hhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeE-Eeccceecc--------c-ccCCCCCc
Q 003460 44 GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTL-ISMENYRVG--------V-DEGNDLDS 108 (818)
Q Consensus 44 ~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~v-I~~D~~~~~--------~-~~~~~~~~ 108 (818)
.+..+++.+..+.....++.+|||+|++|||||||++.|+..+. +.+ +++|+|+.. + ...+.+++
T Consensus 15 ~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~ 94 (229)
T PRK09270 15 VHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPET 94 (229)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCC
Confidence 45557777776666667899999999999999999999998874 345 999999763 1 22456789
Q ss_pred ccHHHHHHHHHhhhcCC-ccccccchhhhhccccccccccCCccEEEEEecccch-----hhhhcCCCEEEEEEcCHHHH
Q 003460 109 IDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-----ARLRSLLDIRVAVVGGVHFS 182 (818)
Q Consensus 109 ~d~~~l~~~L~~l~~~~-~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-----~~l~~~~D~~I~Vda~~e~~ 182 (818)
+|...+.+.+..+..+. .+.+|.|++..+..........+...++|+||.+++. ..+.+.+|++|||+++.+.+
T Consensus 95 ~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~ 174 (229)
T PRK09270 95 FDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVL 174 (229)
T ss_pred CCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHH
Confidence 99999999999999887 8899999998877654433333456799999999975 36778999999999999999
Q ss_pred HHHHHHhccCCCcCHHHHHHh----hchhhhhccCCccccCcEEEECCC
Q 003460 183 LISKVQYDIGDSCSLDSLIDS----IFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 183 l~Rri~Rd~~~~~s~e~~~~~----~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
+.|...|+.....+.+++.+. ++|.+ .++++.+++||+||.|+.
T Consensus 175 ~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 175 RERLVARKLAGGLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTA 222 (229)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecC
Confidence 999999964333455554443 45655 578899999999999984
No 48
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.77 E-value=1.8e-18 Score=185.49 Aligned_cols=161 Identities=25% Similarity=0.376 Sum_probs=132.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccceeccc----c----cCCCCCcccHHHHHHHHHhhhcCCccccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGV----D----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMF 132 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~----~----~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~ 132 (818)
+|||+|++|||||||++.|+..+ ++.++++|+|++.. . ....+++.+++.+.+.+..++.++.+.+|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 58999999999999999999887 46799999997521 0 1123566778888899999999999999999
Q ss_pred hhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHh---hchh
Q 003460 133 DYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDS---IFPL 207 (818)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~---~~p~ 207 (818)
++..+...... ...+.++||+||.+++. +.+++++|++|||+++.+.++.|+++|+...+ .+.+++.++ +.|.
T Consensus 81 ~~~~~~~~~~~--~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~ 158 (273)
T cd02026 81 NHVTGLIDPPE--LIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEARKPD 158 (273)
T ss_pred cccCCCcCCcE--EcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhhchh
Confidence 99987654322 23446799999999765 68899999999999999999999999997765 466655544 5899
Q ss_pred hhhccCCccccCcEEEECC
Q 003460 208 FRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 208 ~~~~Iep~~~~ADiII~N~ 226 (818)
+.+||+|.+++||+||.+.
T Consensus 159 ~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 159 FEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred HHHHhccccccCcEEEEcc
Confidence 9999999999999999876
No 49
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.77 E-value=1.1e-18 Score=176.34 Aligned_cols=147 Identities=20% Similarity=0.266 Sum_probs=116.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceeccc----------ccCCCCCcccHHHHHHHHHhhhcCCccccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV----------DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMF 132 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~----------~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~ 132 (818)
+|||+|++||||||+|+.|++.+ ++.+|++|+||+.. .+++.|+++|++.+.+.|..++.++.+..+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 58999999999999999999998 69999999998742 35677999999999999999999886544444
Q ss_pred hhhhhccc-------------cccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCC-----
Q 003460 133 DYQQKNRI-------------GSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGD----- 193 (818)
Q Consensus 133 d~~~~~~~-------------~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~----- 193 (818)
+....... .......++.++|||||.++++ +.+++++|++|||+++.+++++|++.|+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 44332211 1123345667799999999988 7899999999999999999999999998654
Q ss_pred -CcCHHHHHHhhchhhhh
Q 003460 194 -SCSLDSLIDSIFPLFRK 210 (818)
Q Consensus 194 -~~s~e~~~~~~~p~~~~ 210 (818)
...+..+.+.++|.|.+
T Consensus 161 w~Dp~~yf~~~v~p~y~~ 178 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLK 178 (187)
T ss_pred cCCCCcccccccchhHHH
Confidence 13455555667888877
No 50
>PRK06547 hypothetical protein; Provisional
Probab=99.76 E-value=9.7e-18 Score=167.83 Aligned_cols=153 Identities=21% Similarity=0.178 Sum_probs=120.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 593 (818)
.+.+.+|+|+|++||||||+|+.|++.+++.++++|+||.+. ++. ..+...+.+.+.. .|++...| ||+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~-------~~~-~~~~~~l~~~~l~--~g~~~~~~-yd~ 80 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGW-------HGL-AAASEHVAEAVLD--EGRPGRWR-WDW 80 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceeccc-------ccC-ChHHHHHHHHHHh--CCCCceec-CCC
Confidence 468999999999999999999999999999999999999742 111 1134555565555 77777788 999
Q ss_pred cccccCCCcceeeecCCcEEEEEecccchHhhhhcCC-----EEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhc
Q 003460 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD-----LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVF 668 (818)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D-----~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~ 668 (818)
..+.+. .+....+.++||+||.+++++.+++.+| ++||+++|.+.|+.|++.||.. ...++..+.
T Consensus 81 ~~~~~~---~~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-------~~~~~~~w~ 150 (172)
T PRK06547 81 ANNRPG---DWVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-------YAPHWEMWA 150 (172)
T ss_pred CCCCCC---CcEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-------hhHHHHHHH
Confidence 977654 2333456789999999999988999999 9999999999999999999943 224566677
Q ss_pred chhhhhcc--ccCCcccEEEe
Q 003460 669 PMFQQHIE--PHLVHAHLKIR 687 (818)
Q Consensus 669 p~~~~~I~--p~~~~ADivI~ 687 (818)
|.++.|++ +.+.+||+++.
T Consensus 151 ~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 151 AQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHhcCCChhccEEEec
Confidence 88888876 33688998864
No 51
>PRK06547 hypothetical protein; Provisional
Probab=99.75 E-value=1.8e-17 Score=165.89 Aligned_cols=153 Identities=22% Similarity=0.228 Sum_probs=122.3
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (818)
...+.+|+|+|++||||||+|+.|++.+++.++++|+||.++.... .+...+.+.+.. .|+....+ |++..+.
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~----~~~~~l~~~~l~--~g~~~~~~-yd~~~~~ 84 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLA----AASEHVAEAVLD--EGRPGRWR-WDWANNR 84 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCC----hHHHHHHHHHHh--CCCCceec-CCCCCCC
Confidence 5678999999999999999999999999999999999997654321 133445555544 56666667 8887665
Q ss_pred cccccccccCCccEEEEEecccchhhhhcCCC-----EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhcc-
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLD-----IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI- 212 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D-----~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~I- 212 (818)
+... ....+..++|+||.+++.+.+++.+| ++|||++|.+++++|++.||.. ....+++|.+.++.|+
T Consensus 85 ~~~~--~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~----~~~~~~~w~~~e~~~~~ 158 (172)
T PRK06547 85 PGDW--VSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD----YAPHWEMWAAQEERHFA 158 (172)
T ss_pred CCCc--EEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch----hhHHHHHHHHHHHHHHh
Confidence 4322 23344578999999999888899999 9999999999999999999943 6677788999999999
Q ss_pred -CCccccCcEEEE
Q 003460 213 -EPDLHHAQIRIN 224 (818)
Q Consensus 213 -ep~~~~ADiII~ 224 (818)
..++.+||+|+.
T Consensus 159 ~~~~~~~ad~~~~ 171 (172)
T PRK06547 159 RYDPRDVADWLGS 171 (172)
T ss_pred cCCChhccEEEec
Confidence 477899999874
No 52
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.72 E-value=4.4e-18 Score=193.73 Aligned_cols=175 Identities=25% Similarity=0.436 Sum_probs=156.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC----------Ccccccccccch---h-----hhhcccCCCcccccHHHHHH
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG----------CEVVSLESYFKS---E-----QVKDFKYDDFSSLDLSLLSK 575 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg----------~~vis~Ddfy~~---~-----~~~~~~~d~p~t~D~~ll~~ 575 (818)
...|++||+.|+++|||||++..+...++ +..+++|.||+. + ..+.++|++|+++|.+++..
T Consensus 41 ~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~ 120 (473)
T KOG4203|consen 41 GKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYL 120 (473)
T ss_pred CcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHH
Confidence 35799999999999999999999888776 347788889986 1 12468899999999999999
Q ss_pred HHHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCcccc
Q 003460 576 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM 654 (818)
Q Consensus 576 ~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r 654 (818)
.++.+++|+.+.+|.||+.++.+.+. .+....+.+++|+||+++++ .+.+++++.++|++++.+.++.|++.||+.++
T Consensus 121 ~~~~~~kg~~v~ip~y~~~~~~~~~~-~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 121 TLKNLKKGKAVEIPVYDFVTHSRDEE-KTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHhcccccceeeceeeeeecccCCCC-ceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 99999999999999999999999753 34556788999999999997 78999999999999999999999999999999
Q ss_pred Ccccch--hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 655 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 655 g~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
|+.++. .+|..++.|.|..||+|.+.+||++|+..
T Consensus 200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~ 236 (473)
T KOG4203|consen 200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRG 236 (473)
T ss_pred cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecc
Confidence 999986 68899999999999999999999999754
No 53
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.68 E-value=4.7e-17 Score=163.90 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=110.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----h
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD----L 121 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~----l 121 (818)
++|||||++||||||+++.|++ +|++++++|.+.+.+...+ ..+..|...|.+.+.. +
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999988 9999999999866443322 1245677776665442 2
Q ss_pred hcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHH
Q 003460 122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI 201 (818)
Q Consensus 122 ~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~ 201 (818)
..-+.+.+|............ .....++++|.+++++..+...||.+|+|+||.+.+++|.++|+.........++
T Consensus 80 ~~L~~iihP~I~~~~~~~~~~----~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~~~~~~~~~ri 155 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIKR----NKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERDGLSEEEAEARI 155 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----CHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHHTSTHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHh----ccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhCCCcHHHHHHHH
Confidence 222345556555544443321 1122699999999999999999999999999999999999999966666677777
Q ss_pred HhhchhhhhccCCccccCcEEEECCC
Q 003460 202 DSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 202 ~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
+.++|..++ ++.||+||+|+.
T Consensus 156 ~~Q~~~~~k-----~~~ad~vI~N~g 176 (180)
T PF01121_consen 156 ASQMPDEEK-----RKRADFVIDNNG 176 (180)
T ss_dssp HTS--HHHH-----HHH-SEEEE-SS
T ss_pred HhCCCHHHH-----HHhCCEEEECCC
Confidence 888999888 799999999983
No 54
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.63 E-value=4.9e-16 Score=156.78 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=112.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----hh
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD----LT 122 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~----l~ 122 (818)
+|||+|++||||||+++.|++ +|+.++++|.+.+.....+ ..+.+|...|.+.+.. +.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 589999999999999999998 8999999999866432211 1246777777766553 23
Q ss_pred cCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (818)
Q Consensus 123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~ 202 (818)
..+.+.+|.+.......... .+...++|+|++++++..+...||.+|||++|.+.+++|.+.|+..........++
T Consensus 80 ~l~~i~hp~i~~~~~~~~~~----~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~~s~~~~~~r~~ 155 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLAE----ARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDGLSEEEAEARIA 155 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----ccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 33556667766655444321 12235899999999998888999999999999999999999998543333334444
Q ss_pred hhchhhhhccCCccccCcEEEECCC
Q 003460 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 203 ~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
.+.+..+ .+..||+||.|+.
T Consensus 156 ~Q~~~~~-----~~~~aD~vI~N~~ 175 (179)
T cd02022 156 SQMPLEE-----KRARADFVIDNSG 175 (179)
T ss_pred hcCCHHH-----HHHhCCEEEECcC
Confidence 4444433 3789999999985
No 55
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.62 E-value=1.2e-15 Score=156.25 Aligned_cols=157 Identities=14% Similarity=0.130 Sum_probs=117.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC---------------CCCcccHHHHHHHHHh----h
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN---------------DLDSIDFDALVQNLQD----L 121 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~---------------~~~~~d~~~l~~~L~~----l 121 (818)
.|++|||+|++||||||+++.|++.+|+.++++|.+.+.+.... ..+.+|...|.+.+.. +
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~ 84 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK 84 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence 46889999999999999999999889999999999855432110 0245777666665442 2
Q ss_pred hcCCccccccchhhhhccccccccccCCccEEEEEecccchhhh--hcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH
Q 003460 122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARL--RSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (818)
Q Consensus 122 ~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l--~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~ 199 (818)
..-+.+.+|............ ....++++|.+++++..+ ...||.+|+|+||.+.+++|.+.|+...+.....
T Consensus 85 ~~Le~i~HP~V~~~~~~~~~~-----~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~~~a~~ 159 (204)
T PRK14733 85 KWLEDYLHPVINKEIKKQVKE-----SDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNRQQAVA 159 (204)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-----cCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence 223445666655554433321 123589999999998654 5689999999999999999999998665556666
Q ss_pred HHHhhchhhhhccCCccccCcEEEECCC
Q 003460 200 LIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 200 ~~~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
+++.++|..++ ++.||+||+|+.
T Consensus 160 ri~~Q~~~eek-----~~~aD~VI~N~g 182 (204)
T PRK14733 160 FINLQISDKER-----EKIADFVIDNTE 182 (204)
T ss_pred HHHhCCCHHHH-----HHhCCEEEECcC
Confidence 77788888887 799999999984
No 56
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.62 E-value=1.1e-15 Score=156.42 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=109.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCC-cccHHHHHHHHHh----
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLD-SIDFDALVQNLQD---- 120 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~-~~d~~~l~~~L~~---- 120 (818)
.+|||+|++||||||+|+.|++.+|+.++|+|.+.+.+...+ ..+ .+|...+.+.+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 579999999999999999999988999999999866432211 123 5666666555432
Q ss_pred hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (818)
Q Consensus 121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~ 200 (818)
...-+.+.+|........... ......++++|.+++++..+...||.+|+|+||.+++++|.+.|+..........
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~----~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g~s~e~~~~r 157 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELA----QLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDGLTEEEAEAR 157 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHH----hcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 111223444544433332221 1223458999999999999999999999999999999999999984433333344
Q ss_pred HHhhchhhhhccCCccccCcEEEECCC
Q 003460 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 201 ~~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
++.++|... .+..||+||+|+.
T Consensus 158 i~~Q~~~~~-----k~~~aD~vI~N~g 179 (195)
T PRK14730 158 INAQWPLEE-----KVKLADVVLDNSG 179 (195)
T ss_pred HHhCCCHHH-----HHhhCCEEEECCC
Confidence 444455443 3789999999985
No 57
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.62 E-value=1.3e-15 Score=160.05 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=112.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD---- 120 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~---- 120 (818)
|++|||||++||||||+++.|++.+|+++||+|.+.+.+.+.+ ..+.+|...|.+.+..
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~ 80 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQA 80 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHH
Confidence 5789999999999999999999888999999999865432211 1256777777766542
Q ss_pred hhcCCccccccchhhhhccccc-------cccccCCccEEEEEecccchhhh-hcCCCEEEEEEcCHHHHHHHHHHhccC
Q 003460 121 LTEGKDTLIPMFDYQQKNRIGS-------KVIKGASSGVVIVDGTYALDARL-RSLLDIRVAVVGGVHFSLISKVQYDIG 192 (818)
Q Consensus 121 l~~~~~i~~p~~d~~~~~~~~~-------~~~~~~~~~vVIvEG~~l~~~~l-~~~~D~~I~Vda~~e~~l~Rri~Rd~~ 192 (818)
+..-+.+.+|............ .........++++|.+++++..+ ...||.+|+|++|.+.+++|.+.|+..
T Consensus 81 ~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~g~ 160 (244)
T PTZ00451 81 RRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRNGF 160 (244)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcCCC
Confidence 2223445566554433322210 01111223589999999999764 467899999999999999999999744
Q ss_pred CCcCHHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460 193 DSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 193 ~~~s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
.....+..++.+++..++ +..||+||.|+
T Consensus 161 s~eea~~Ri~~Q~~~~ek-----~~~aD~VI~N~ 189 (244)
T PTZ00451 161 SKEEALQRIGSQMPLEEK-----RRLADYIIEND 189 (244)
T ss_pred CHHHHHHHHHhCCCHHHH-----HHhCCEEEECC
Confidence 444455555556666555 78999999998
No 58
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.60 E-value=2.5e-15 Score=153.69 Aligned_cols=156 Identities=22% Similarity=0.232 Sum_probs=111.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD---- 120 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~---- 120 (818)
|.+|||+|++||||||+++.|++ +|+.++++|.+.+.....+ ..+.+|...|.+.+..
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 57899999999999999999998 9999999999866432111 1245676666665442
Q ss_pred hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (818)
Q Consensus 121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~ 200 (818)
+..-+.+.+|............ .....++++|++++++..+...||.+|+|++|.+.+++|.+.|+..........
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~~~----~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~r 156 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQLQE----AESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDGLSEEEAEAI 156 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----cccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2222345556554444333211 122368999999999998999999999999999999999999875433344444
Q ss_pred HHhhchhhhhccCCccccCcEEEECCC
Q 003460 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 201 ~~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
++.+.+..++ ...||+||+|+.
T Consensus 157 i~~Q~~~~~~-----~~~ad~vI~N~g 178 (194)
T PRK00081 157 IASQMPREEK-----LARADDVIDNNG 178 (194)
T ss_pred HHHhCCHHHH-----HHhCCEEEECCC
Confidence 4555555544 678999999985
No 59
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=99.60 E-value=4.2e-15 Score=150.45 Aligned_cols=140 Identities=22% Similarity=0.293 Sum_probs=109.7
Q ss_pred ccccccccccccceeeccCCCCCcchhhhccCCeeeEeee-CCEEEEEEcceeecCCC----cccCceeEEEEec----c
Q 003460 249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS-GIRYYLSIGDQRIVDKN----FIIRPKAEFEVGR----M 319 (818)
Q Consensus 249 ~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~-~~~~~lt~Kg~~~~~~~----~~~k~r~E~ev~v----~ 319 (818)
.++.+.....+.|+|||.|.++++.++.++ |||.. +++..+|||+|...+.. +.+. |.|+|..+ .
T Consensus 25 ~~~~~~~~~~~~d~Y~dt~~~~L~~~~~~l-----RiR~~~~~~~~lTlK~~~~~~~~~e~~~~~~-r~e~e~~i~~~~~ 98 (185)
T PF01928_consen 25 LGAEFPKEEHQTDTYFDTPDRDLRKAGIAL-----RIRRENGDGWYLTLKGPGSDGPREEIEFEVS-REEYEAPISDAEE 98 (185)
T ss_dssp CTEEEEEEEEEEEEEEEETTTHHHHTTSEE-----EEEEETTTEEEEEEEEESSSSSEEEEEEEES-HHCCEEEHSHHHH
T ss_pred hccccCeEEEEEEEEEeCCChhHHhCCcEE-----EEEeecCCccEEEEEccCccCcccccceeec-chhhhccccchHH
Confidence 345667778899999999999988777666 99976 77777999988765430 0001 33333333 5
Q ss_pred HHHHHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCC-CCCeEEEEec--CHHH-------HHHHHHHcCCCCCc-cch
Q 003460 320 TLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTL-DETFMVLRGT--NRKT-------VGAEALRMGINGPW-ITK 388 (818)
Q Consensus 320 ~~~~L~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~l-g~~fvEiE~~--~~~~-------i~~~~~~Lgl~~~~-~~~ 388 (818)
+.++|..+||.+.+.++|.|+.|.++++.|+||+++++ |. |+|||.. +.+. +.+++..||++... +++
T Consensus 99 ~~~~l~~l~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~-~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r 177 (185)
T PF01928_consen 99 MREILEALGLRPVARIEKKRRSYRLEGVEVELDEVDGLPGT-FLEIEIESEDEEDLKEAAEEILALLNELGISENSKIER 177 (185)
T ss_dssp HHHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTTEE-EEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHS
T ss_pred HHHHHHHhcCceeEEEEEEEEEEEECCEEEEEEEEecceEE-EEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHH
Confidence 89999999999999999999999999999999999999 87 9999998 3444 34455569998855 999
Q ss_pred hHHHHHH
Q 003460 389 SYLEMVL 395 (818)
Q Consensus 389 sYlel~l 395 (818)
+|++|+-
T Consensus 178 ~y~~l~~ 184 (185)
T PF01928_consen 178 SYLELLK 184 (185)
T ss_dssp HHHHHCH
T ss_pred HHHHhhc
Confidence 9999863
No 60
>cd07762 CYTH-like_Pase_1 Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup
Probab=99.59 E-value=6.2e-15 Score=148.65 Aligned_cols=119 Identities=14% Similarity=-0.021 Sum_probs=105.5
Q ss_pred ccccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec----------------
Q 003460 255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---------------- 318 (818)
Q Consensus 255 ~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---------------- 318 (818)
....|.|+|||+|+++|+.+++++ |||..++++.+|||||.. +.|.|+|+.+
T Consensus 25 ~~~~q~n~Yfdtp~~~l~~~~~aL-----RiR~~~~~~~~TlK~~~~-------~~r~E~e~~l~~~~~~~~~~~~~~~~ 92 (180)
T cd07762 25 DFFKQTNYYFDTPDFALKKKHSAL-----RIREKEGKAELTLKVPQE-------VGLLETNQPLTLEEAEKLIKGGTLPE 92 (180)
T ss_pred CcEEEEEEEEeCCCHHHHhCCcEE-----EEEeeCCeEEEEEeeCCC-------CCCcEEeecCCHHHHHHHhccccCCc
Confidence 446799999999999999999999 999999999999998873 5789999998
Q ss_pred -cHHHHHHhcCCce-----eEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--CH----HHHHHHHHHcCCCCCc
Q 003460 319 -MTLGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR----KTVGAEALRMGINGPW 385 (818)
Q Consensus 319 -~~~~~L~~LGf~~-----~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~~----~~i~~~~~~Lgl~~~~ 385 (818)
.+..+|..|||.+ ++.++|.|..|.+++..+|||++.++|..++|||.. +. +.+.++++.||+....
T Consensus 93 ~~~~~~L~~lg~~~~~l~~~~~~~t~R~~~~~~~~~l~LD~~~~lg~~d~ElE~e~~~~~~~~~~~~~ll~~~gi~~~~ 171 (180)
T cd07762 93 GEILDKLKELGIDPSELKLFGSLTTIRAEIPYEGGLLVLDHSLYLGITDYELEYEVDDYEAGKKAFLELLKQYNIPYRP 171 (180)
T ss_pred hHHHHHHHHhCCCcccEEEEeeEEEEEEEEEeCCEEEEEeccEeCCCeeEEEEEEeCCHHHHHHHHHHHHHHcCCCccc
Confidence 2779999999986 999999999999999999999999999933999876 32 6789999999998754
No 61
>cd07758 ThTPase Thiamine Triphosphatase. ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.
Probab=99.58 E-value=8.6e-15 Score=149.55 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=103.7
Q ss_pred cccccccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceee---cCCCcccCceeEEEEec---c------
Q 003460 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRI---VDKNFIIRPKAEFEVGR---M------ 319 (818)
Q Consensus 252 ~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~---~~~~~~~k~r~E~ev~v---~------ 319 (818)
.+.....++|+|||+|+++++.+|+++ |+|.. ..+|++|++.. +... +.++|+++.+ .
T Consensus 25 ~~~~~~~~~d~YfDtp~~~l~~~~~~L-----RiR~~--~~~lk~~~~~~~~~~~~~---~~~~E~~~~~~~~~~v~~~~ 94 (196)
T cd07758 25 ELLGRRTFHDTYYDTPDNTLSLNDVWL-----RQRNG--QWELKIPPGGDPPTAGAN---TRYEELTGEAAIAAALRKLL 94 (196)
T ss_pred CCCceEEEeeEEEeCCChhHHhCCcEE-----EEECC--eEEEEecCCCCCCCCCCc---ceEEecccHHHHHHHHHHhc
Confidence 566788899999999999999999988 99963 67788886554 2333 8999998888 1
Q ss_pred ---------HHHHHHhcCCceeEEEEEEEEEEEeC-CEEEEEeccCCCCCCeEEEEec--C---H-------HHHHHHHH
Q 003460 320 ---------TLGGLLDLGYSVVASYKRASTYVVYG-NLSVSFETIDTLDETFMVLRGT--N---R-------KTVGAEAL 377 (818)
Q Consensus 320 ---------~~~~L~~LGf~~~~~~~K~R~~~~~~-~~~i~lD~v~~lg~~fvEiE~~--~---~-------~~i~~~~~ 377 (818)
|.++|..|||.++++++|.|++|+++ +++|+||+++ +|..|+|||.+ + + +.+.++++
T Consensus 95 ~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~~~g~~v~LD~~~-~G~~~~EiE~~v~~~~~~~~~~~a~~~i~~~~~ 173 (196)
T cd07758 95 GGALPSAGGLGDELANLGLREFASFVTKRESWKLDGAFRVDLDRTD-FGYSVGEVELLVEEEDNEAEVPAALAKIDELIS 173 (196)
T ss_pred CCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEcCCCcEEEEeccc-CCcceEEEEEEEecccchhhHHHHHHHHHHHHH
Confidence 34799999999999999999999999 9999999999 77779999986 4 2 66899999
Q ss_pred HcCCCCCc
Q 003460 378 RMGINGPW 385 (818)
Q Consensus 378 ~Lgl~~~~ 385 (818)
+||+...+
T Consensus 174 ~lg~~~~~ 181 (196)
T cd07758 174 ALMERYLW 181 (196)
T ss_pred HhCCCccc
Confidence 99998843
No 62
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.57 E-value=4.7e-15 Score=146.90 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=123.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCC-----------------CcccHHHHHHHHHh----
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL-----------------DSIDFDALVQNLQD---- 120 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~-----------------~~~d~~~l~~~L~~---- 120 (818)
|++||+||++||||||+++.+. .+|+++||+|.+.+...+.+.| +.+|.+.+-+.+..
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~ 79 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKK 79 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHH
Confidence 6899999999999999999997 6999999999987754443332 34555555554331
Q ss_pred hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (818)
Q Consensus 121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~ 200 (818)
....+.+.+|.+.+..-..... .-....+++++|-+++|+..+.+++-.+|.|.||.+.+++|.+.||...+.+.+..
T Consensus 80 r~~Ln~IthP~Ir~em~ke~~~--~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~dAe~R 157 (225)
T KOG3220|consen 80 RQALNKITHPAIRKEMFKEILK--LLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEEDAENR 157 (225)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--HHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHHHHHH
Confidence 1123456667766665554432 23456789999999999998999999999999999999999999996555677777
Q ss_pred HHhhchhhhhccCCccccCcEEEECCCC
Q 003460 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (818)
Q Consensus 201 ~~~~~p~~~~~Iep~~~~ADiII~N~~~ 228 (818)
.+.++|...+ ...||+||+|++.
T Consensus 158 l~sQmp~~~k-----~~~a~~Vi~Nng~ 180 (225)
T KOG3220|consen 158 LQSQMPLEKK-----CELADVVIDNNGS 180 (225)
T ss_pred HHhcCCHHHH-----HHhhheeecCCCC
Confidence 8888999888 8999999999964
No 63
>PLN02422 dephospho-CoA kinase
Probab=99.56 E-value=6.5e-15 Score=153.48 Aligned_cols=158 Identities=18% Similarity=0.106 Sum_probs=113.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC-----------------CCCCcccHHHHHHHHHh----
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQD---- 120 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------------~~~~~~d~~~l~~~L~~---- 120 (818)
|.+|||+|++||||||+++.|++ +|+.++++|.+.+.+.+. ...+.+|...|.+.+..
T Consensus 1 M~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~ 79 (232)
T PLN02422 1 MRVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSK 79 (232)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 35799999999999999999985 899999999985533221 12356777777666542
Q ss_pred hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (818)
Q Consensus 121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~ 200 (818)
+..-+.+.+|............. ......++++|.+++++..+...||.+|+|++|.+.+++|.+.|+..........
T Consensus 80 ~~~Le~IlHP~V~~~~~~~~~~~--~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g~s~eea~~R 157 (232)
T PLN02422 80 RQLLNRLLAPYISSGIFWEILKL--WLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQARNR 157 (232)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH--HhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 22234455666544333222111 1122458999999999998889999999999999999999999985443444445
Q ss_pred HHhhchhhhhccCCccccCcEEEECCC
Q 003460 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 201 ~~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
++.+.|...+ .+.||+||+|+.
T Consensus 158 i~~Q~~~eek-----~~~AD~VI~N~g 179 (232)
T PLN02422 158 INAQMPLDWK-----RSKADIVIDNSG 179 (232)
T ss_pred HHHcCChhHH-----HhhCCEEEECCC
Confidence 5566776555 688999999995
No 64
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.56 E-value=1.1e-14 Score=149.62 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=111.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC-----------------CCCCcccHHHHHHHHHh----
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQD---- 120 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------------~~~~~~d~~~l~~~L~~---- 120 (818)
|++|||+|++||||||+++.|++ +|+++|++|.+.+.+... ...+.+|...|.+.+..
T Consensus 1 m~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~ 79 (200)
T PRK14734 1 MLRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ 79 (200)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence 46899999999999999999987 799999999874432211 11256677666665442
Q ss_pred hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (818)
Q Consensus 121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~ 200 (818)
+..-+.+.+|............ .......++++|.+++++..+...||.+|||++|.+++++|.+.|+..........
T Consensus 80 ~~~le~i~hP~v~~~~~~~~~~--~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~g~s~e~~~~r 157 (200)
T PRK14734 80 TALLNAITHPRIAEETARRFNE--ARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKRGLDEDDARRR 157 (200)
T ss_pred HHHHHHhhCHHHHHHHHHHHHH--HHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 2222345556554433332211 11123468999999999988888999999999999999999999974333344455
Q ss_pred HHhhchhhhhccCCccccCcEEEECCC
Q 003460 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 201 ~~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
++.+++.+.+ +..||++|+|+.
T Consensus 158 i~~Q~~~~~k-----~~~ad~vI~N~g 179 (200)
T PRK14734 158 IAAQIPDDVR-----LKAADIVVDNNG 179 (200)
T ss_pred HHhcCCHHHH-----HHhCCEEEECcC
Confidence 5566776665 589999999985
No 65
>PRK08233 hypothetical protein; Provisional
Probab=99.53 E-value=6.4e-14 Score=140.85 Aligned_cols=150 Identities=18% Similarity=0.259 Sum_probs=110.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-Ccccccccccchhhh---hcc--cCCCcccccHHHHHHHHHHHhcCCceecc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFKSEQV---KDF--KYDDFSSLDLSLLSKNISDIRNGRRTKVP 589 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg-~~vis~Ddfy~~~~~---~~~--~~d~p~t~D~~ll~~~L~~L~~g~~v~~P 589 (818)
++.+|+|+|++||||||+|+.|+..++ +.++++|+|+.+... ... .......++++.+.+.+..+.++.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 76 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKS----- 76 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCC-----
Confidence 368999999999999999999999996 678889999764211 110 011224567777777776654421
Q ss_pred cccccccccCCCcceeeecCCcEEEEEecccc-hHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCc-ccc--hhhHHH
Q 003460 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC-FMS--QNDIMM 665 (818)
Q Consensus 590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~-~~~--~~~~~~ 665 (818)
..++||+||.+.. ++.+...+|+.||++++.++++.|++.|+...... ... ...|..
T Consensus 77 -------------------~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 137 (182)
T PRK08233 77 -------------------NVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLN 137 (182)
T ss_pred -------------------CceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 1268899998765 47888899999999999999999999997543221 121 145666
Q ss_pred hhcchhhhhccccCCcccEEEeCC
Q 003460 666 TVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 666 ~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
.++|.|.+++++....|+++|++.
T Consensus 138 ~~~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 138 YARPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHHHhhcCccCCeEEEcCC
Confidence 788999998888777899998764
No 66
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.52 E-value=2.2e-14 Score=142.26 Aligned_cols=160 Identities=19% Similarity=0.251 Sum_probs=114.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhhh------cccCCCcccccHHHHHHHHHHHhcCCc-ee
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVK------DFKYDDFSSLDLSLLSKNISDIRNGRR-TK 587 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~~~~~~------~~~~d~p~t~D~~ll~~~L~~L~~g~~-v~ 587 (818)
+.+||||+|.+.|||||||+.|+..| |+.+||.||||++.+.. -.+|+.++++|++++.+.+.....+.. ..
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 46899999999999999999999999 58899999999995531 246889999999999998887665532 11
Q ss_pred ccc---ccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccchhhH
Q 003460 588 VPI---FDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDI 663 (818)
Q Consensus 588 ~P~---yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~ 663 (818)
.++ .+....+.....-........++|+||.+++. +.+.+.+|..|++..+.+++..||-.|- ++.....-|
T Consensus 83 ~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt----~y~p~~tgy 158 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREART----YYPPDDTGY 158 (225)
T ss_pred hHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccc----cCCCCCCcc
Confidence 111 00000000000001123456899999999986 8888999999999999999988887664 444433334
Q ss_pred HH-hhcchhhhhccccC
Q 003460 664 MM-TVFPMFQQHIEPHL 679 (818)
Q Consensus 664 ~~-~v~p~~~~~I~p~~ 679 (818)
.. .++|.|.++.+..+
T Consensus 159 fd~~~~P~Y~~~~~~~~ 175 (225)
T KOG3308|consen 159 FDPVVWPHYEKNFEEAR 175 (225)
T ss_pred ccCccchHHHHHHHHHH
Confidence 44 48899888866443
No 67
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.52 E-value=4.1e-14 Score=146.27 Aligned_cols=160 Identities=18% Similarity=0.228 Sum_probs=107.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC-------------------CCCC--cccHHHHHHHH
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-------------------NDLD--SIDFDALVQNL 118 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-------------------~~~~--~~d~~~l~~~L 118 (818)
+.+++|||+|++||||||+++.|++ +|+.++++|.+.+.+... +..+ .+|...+.+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 4468999999999999999999987 899999999874432211 0011 25655554443
Q ss_pred Hh----hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC
Q 003460 119 QD----LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS 194 (818)
Q Consensus 119 ~~----l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~ 194 (818)
.. +..-+.+.+|............ .......++++|++++++..+...||.+|+|++|.+++++|.+.|+....
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~~--~~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~s~ 159 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVDR--AARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMGSR 159 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHHH--HHhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCCCH
Confidence 31 2222334455544333322211 11123468999999999988888899999999999999999999975433
Q ss_pred cCHHHHHHhhchhhhhccCCccccCcEEEECCC
Q 003460 195 CSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 195 ~s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
......++.+.+...+ .+.||++|+|+.
T Consensus 160 e~~~~Ri~~q~~~~~~-----~~~ad~vI~N~g 187 (208)
T PRK14731 160 EEIRRRIAAQWPQEKL-----IERADYVIYNNG 187 (208)
T ss_pred HHHHHHHHHcCChHHH-----HHhCCEEEECCC
Confidence 3334444445555444 357999999985
No 68
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.51 E-value=2.1e-14 Score=146.91 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=108.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----hh
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD----LT 122 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~----l~ 122 (818)
+|||+|++||||||+++.|++ +|+.++++|.+.+.+.+.+ ..+..|...|.+.+.. +.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999976 7999999999855332211 1255677766665442 22
Q ss_pred cCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (818)
Q Consensus 123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~ 202 (818)
.-+.+.+|............ .....++|+|.+++++..+...||.+|||++|.+.+++|.+.|+..........++
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~----~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~ 155 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQT----TAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRDGMKKEDVLARIA 155 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHH----HhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 23345566655444333211 11235899999999998888999999999999999999999997543333333344
Q ss_pred hhchhhhhccCCccccCcEEEECCC
Q 003460 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 203 ~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
.+.|..+ .+..||+||.|+.
T Consensus 156 ~Q~~~~~-----k~~~aD~vI~N~~ 175 (196)
T PRK14732 156 SQLPITE-----KLKRADYIVRNDG 175 (196)
T ss_pred HcCCHHH-----HHHhCCEEEECCC
Confidence 4444443 3789999999985
No 69
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.51 E-value=2.2e-14 Score=146.60 Aligned_cols=156 Identities=23% Similarity=0.259 Sum_probs=109.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------C------CCcccHHHHHHHHHh----
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------D------LDSIDFDALVQNLQD---- 120 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------~------~~~~d~~~l~~~L~~---- 120 (818)
+.+|||||++||||||+|+.+++ +|++++++|++.+.+.+.+ . -+.+|...|.+.+..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 68999999999999999999999 9999999999866332221 1 123444444433221
Q ss_pred hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (818)
Q Consensus 121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~ 200 (818)
....+.+.+|....... .. .......++++|-+++++......+|.+|.|+||.+++++|.++|+...+...+..
T Consensus 81 ~~~Le~i~hPli~~~~~-~~----~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~~~~~ 155 (201)
T COG0237 81 RLKLEKILHPLIRAEIK-VV----IDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEEDAEAR 155 (201)
T ss_pred HHHHHHhhhHHHHHHHH-HH----HHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH
Confidence 11112233444333322 11 11112228999999999877777799999999999999999999994444566667
Q ss_pred HHhhchhhhhccCCccccCcEEEECCCC
Q 003460 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (818)
Q Consensus 201 ~~~~~p~~~~~Iep~~~~ADiII~N~~~ 228 (818)
...+.+..++ ...||+|++|+..
T Consensus 156 ~~~Q~~~~ek-----~~~ad~vi~n~~~ 178 (201)
T COG0237 156 LASQRDLEEK-----LALADVVIDNDGS 178 (201)
T ss_pred HHhcCCHHHH-----HhhcCChhhcCCC
Confidence 7777888887 6899999999963
No 70
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.51 E-value=5e-14 Score=158.91 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=104.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC-----------------CCCCcccHHHHHHHHHh----
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG-----------------NDLDSIDFDALVQNLQD---- 120 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~-----------------~~~~~~d~~~l~~~L~~---- 120 (818)
|++|||+|++||||||+++.|++ +|+.+||+|.+.+.+... +..+.+|...|.+.+..
T Consensus 1 m~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~ 79 (395)
T PRK03333 1 MLRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA 79 (395)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 46799999999999999999987 899999999985542221 11256777777665442
Q ss_pred hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (818)
Q Consensus 121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~ 200 (818)
+..-+.+.+|.+........ ...+...++++|.+++++..+...||.+|||++|.+.+++|...|+..........
T Consensus 80 ~~~le~i~hP~I~~~i~~~i----~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg~s~~~a~~r 155 (395)
T PRK03333 80 RAVLNGIVHPLVGARRAELI----AAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQRGMAEADARAR 155 (395)
T ss_pred HHHHHHhhhHHHHHHHHHHH----HhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcCCCCHHHHHHH
Confidence 11222344454433222211 11233456777788888888889999999999999999999888653222222233
Q ss_pred HHhhchhhhhccCCccccCcEEEECCCC
Q 003460 201 IDSIFPLFRKHIEPDLHHAQIRINNRFV 228 (818)
Q Consensus 201 ~~~~~p~~~~~Iep~~~~ADiII~N~~~ 228 (818)
+..+.+...+ ...||++|+|+..
T Consensus 156 i~~Q~~~e~k-----~~~AD~vIdN~~s 178 (395)
T PRK03333 156 IAAQASDEQR-----RAVADVWLDNSGT 178 (395)
T ss_pred HHhcCChHHH-----HHhCCEEEECCCC
Confidence 3333443333 7889999999853
No 71
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.50 E-value=5.6e-14 Score=141.32 Aligned_cols=171 Identities=15% Similarity=0.188 Sum_probs=136.5
Q ss_pred CccccccC-CcccccchhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-------------CeEEec
Q 003460 28 SPSILQSL-PVHASFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------------CTLISM 93 (818)
Q Consensus 28 ~~~~~~~~-~~~~s~~~~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-------------~~vI~~ 93 (818)
.+...|.. ++..++++.|...++++. ++...++|++|++||||||++.+++++.. +.++.|
T Consensus 89 ~~~~~qv~~~D~s~~de~y~~~~e~L~-----~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPM 163 (323)
T KOG2702|consen 89 EMIENQVLFKDHSEDDEFYPVKYEALT-----SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPM 163 (323)
T ss_pred HHHHhcccccCcchhhhhhHHHHHHhc-----ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecc
Confidence 33444444 444556667777777665 45668899999999999999999988542 356999
Q ss_pred cceecc-------------cccCCCCCcccHHHHHHHHHhhh--cCCccccccchhhhhccccccccccCCccEEEEEec
Q 003460 94 ENYRVG-------------VDEGNDLDSIDFDALVQNLQDLT--EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGT 158 (818)
Q Consensus 94 D~~~~~-------------~~~~~~~~~~d~~~l~~~L~~l~--~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~ 158 (818)
|.|+.. ...++.|.+||.+.+.+.+..++ ...+++.|.|++..++++.......+..++||+||.
T Consensus 164 DGFHlsr~~LD~f~dP~~AharRGapwTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGn 243 (323)
T KOG2702|consen 164 DGFHLSRRCLDLFKDPQTAHARRGAPWTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGN 243 (323)
T ss_pred cchhhhHHHHHhhcChHHHHhhcCCCcccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEecc
Confidence 999542 23467789999999999888777 456799999999999999998988999999999999
Q ss_pred ccch-----hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHh
Q 003460 159 YALD-----ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDS 203 (818)
Q Consensus 159 ~l~~-----~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~ 203 (818)
|++. ..+.+.+|.++|++.+.+...+|...|....+ .+.++...+
T Consensus 244 YlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~RVa~RHl~sGl~~t~~ea~er 295 (323)
T KOG2702|consen 244 YLLLDQENWKDIYKTLDDKYKIDVDYEAAEERVAKRHLQSGLVTTIAEARER 295 (323)
T ss_pred EEEecCccHHHHHHHhhhheeccccHHHHHHHHHHHhhcccccCCHHHHHhh
Confidence 9986 46678889999999999999999999998877 566555543
No 72
>PRK08233 hypothetical protein; Provisional
Probab=99.49 E-value=2.8e-13 Score=136.17 Aligned_cols=142 Identities=18% Similarity=0.356 Sum_probs=99.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC-CeEEeccceeccccc---------CCCCCcccHHHHHHHHHhhhcCCcccccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG-CTLISMENYRVGVDE---------GNDLDSIDFDALVQNLQDLTEGKDTLIPM 131 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg-~~vI~~D~~~~~~~~---------~~~~~~~d~~~l~~~L~~l~~~~~i~~p~ 131 (818)
.++|+|+|++||||||+|+.|++.++ +.+++.|.++..... +...+.++.+.+.+.+..+..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 75 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAK------- 75 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcC-------
Confidence 58999999999999999999999996 778889988643211 1111233444443333332211
Q ss_pred chhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC--cC----HHHHHHhh
Q 003460 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CS----LDSLIDSI 204 (818)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s----~e~~~~~~ 204 (818)
....+||+||++... +.+...+|++|||++|.++++.|++.|+.... .. ........
T Consensus 76 ----------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (182)
T PRK08233 76 ----------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYA 139 (182)
T ss_pred ----------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 112578899987654 67888899999999999999999998875321 12 23334455
Q ss_pred chhhhhccCCccccCcEEEECC
Q 003460 205 FPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 205 ~p~~~~~Iep~~~~ADiII~N~ 226 (818)
.|.|.+++++.+..|+++|+++
T Consensus 140 ~~~y~~~~~~~~~~~~~vId~~ 161 (182)
T PRK08233 140 RPLYLEALHTVKPNADIVLDGA 161 (182)
T ss_pred HHHHHHHhhcCccCCeEEEcCC
Confidence 7888888877777899999876
No 73
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.48 E-value=6e-14 Score=139.15 Aligned_cols=166 Identities=20% Similarity=0.296 Sum_probs=117.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceecc----------cccCCCCCcccHHHHHHHHHhhhcCCccc-
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVG----------VDEGNDLDSIDFDALVQNLQDLTEGKDTL- 128 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~----------~~~~~~~~~~d~~~l~~~L~~l~~~~~i~- 128 (818)
+.++|||+|.++|||||||+.|+..+ |+.+||.||||+. ..+++.++++|++++.+.+.....+....
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 45899999999999999999999988 6899999999883 34566789999999999887665553321
Q ss_pred -c-------ccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH
Q 003460 129 -I-------PMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (818)
Q Consensus 129 -~-------p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~ 199 (818)
. ..+.+..... ........++|+||.+++. +.+...+|.+|++.++.+++.+||-.|......+--.
T Consensus 83 ~ar~~~v~~~~~~~~~~~~----q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~y~p~~tgy 158 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQF----QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTYYPPDDTGY 158 (225)
T ss_pred hHhhhhhhhhHHHHHhhhc----CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccccCCCCCCcc
Confidence 0 0111111111 1122345689999999998 7888899999999999999999888776433222111
Q ss_pred HHHhhchhhhhccCCccccC--cEEEECCCCCC
Q 003460 200 LIDSIFPLFRKHIEPDLHHA--QIRINNRFVSS 230 (818)
Q Consensus 200 ~~~~~~p~~~~~Iep~~~~A--DiII~N~~~~~ 230 (818)
+...++|.|.++.+..+.++ |....|.-.+.
T Consensus 159 fd~~~~P~Y~~~~~~~~d~~~h~~~flngdvs~ 191 (225)
T KOG3308|consen 159 FDPVVWPHYEKNFEEARDRSRHDSLFLNGDVSE 191 (225)
T ss_pred ccCccchHHHHHHHHHHhhcccceeeecccchh
Confidence 22235788888886555554 77777764443
No 74
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.45 E-value=1.5e-13 Score=139.74 Aligned_cols=156 Identities=22% Similarity=0.227 Sum_probs=107.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh----hh
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD----LT 122 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~----l~ 122 (818)
+|||+|++||||||+++.|++..|+.++++|.+.+.+.+.+ ..+..|...|.+.+.. +.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 48999999999999999999876699999999865432221 1235666665554431 11
Q ss_pred cCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (818)
Q Consensus 123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~ 202 (818)
.-+.+.+|.+........... .....+++++.+++++..+...||.+|+|+++.+.++.|.+.|+..........++
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~---~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~~~s~~~~~~r~~ 157 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQF---QSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRDNLTEEEVQKRLA 157 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHh---hcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 123345565544443332211 11225899999999887888999999999999999999999998433334444445
Q ss_pred hhchhhhhccCCccccCcEEEECCC
Q 003460 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 203 ~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
.+.+.+.+ +..||++|+|+.
T Consensus 158 ~q~~~~~~-----~~~ad~vI~N~~ 177 (188)
T TIGR00152 158 SQMDIEER-----LARADDVIDNSA 177 (188)
T ss_pred hcCCHHHH-----HHhCCEEEECCC
Confidence 55555444 688999999984
No 75
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.43 E-value=4e-13 Score=148.41 Aligned_cols=170 Identities=19% Similarity=0.259 Sum_probs=118.8
Q ss_pred hhhHHHHHH----HHHHHHhc-----CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccc-------
Q 003460 43 HGYYLLVKS----IQELREKK-----GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVD------- 101 (818)
Q Consensus 43 ~~~~~l~~~----i~~~~~~~-----~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~------- 101 (818)
+.|.++... |..+..+. .+|++|||+|++|||||||++.|...+. +.+|++|+||....
T Consensus 184 ~~ylPl~~w~~~~i~~h~~~~~~~~~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~ 263 (460)
T PLN03046 184 HYYIPVFIWCEDQIAEHRSKFKDGDDIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRE 263 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHh
Confidence 355566554 44444322 2689999999999999999999988772 67899999986321
Q ss_pred ---------cCCCCCcccHHHHHHHHHhh----hcCCccccccchhhhhc----ccccc--ccccCCccEEEEEecccch
Q 003460 102 ---------EGNDLDSIDFDALVQNLQDL----TEGKDTLIPMFDYQQKN----RIGSK--VIKGASSGVVIVDGTYALD 162 (818)
Q Consensus 102 ---------~~~~~~~~d~~~l~~~L~~l----~~~~~i~~p~~d~~~~~----~~~~~--~~~~~~~~vVIvEG~~l~~ 162 (818)
.++.|.++|.....+.|..+ +.|+.+.+|.||+..+. |.... .....+.+|||+||++++.
T Consensus 264 ~nP~n~LL~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~ 343 (460)
T PLN03046 264 RNPGNALLELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGF 343 (460)
T ss_pred hCccchhhcccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCC
Confidence 12346789988877777776 56888999999999854 44321 1234567899999998765
Q ss_pred h--------------------------hhhcCCCEEEEEEcC-HHHHHHHHHHhccCC------Cc---CHHHHHHhhch
Q 003460 163 A--------------------------RLRSLLDIRVAVVGG-VHFSLISKVQYDIGD------SC---SLDSLIDSIFP 206 (818)
Q Consensus 163 ~--------------------------~l~~~~D~~I~Vda~-~e~~l~Rri~Rd~~~------~~---s~e~~~~~~~p 206 (818)
. .+...+|.-|.+.++ .+...+||.+++... .. .+.++++.++|
T Consensus 344 ~P~~~~~l~~~D~~l~~VN~~L~~Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV~~FV~~YmP 423 (460)
T PLN03046 344 KPLPNEVVKAVDPQLEVVNKNLEAYYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEVMDFVSRYLP 423 (460)
T ss_pred CCCChHHhhccChhHHHHHHHHHHHHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhhh
Confidence 1 111246676777776 477778887666422 12 35566778899
Q ss_pred hhhhcc
Q 003460 207 LFRKHI 212 (818)
Q Consensus 207 ~~~~~I 212 (818)
.|+.|.
T Consensus 424 aY~~y~ 429 (460)
T PLN03046 424 AYKAYL 429 (460)
T ss_pred HHHHHH
Confidence 998877
No 76
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.41 E-value=2.8e-13 Score=136.74 Aligned_cols=158 Identities=18% Similarity=0.218 Sum_probs=110.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh---------h-ccc---CCCcccccHHHHHHHHHH----Hh
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV---------K-DFK---YDDFSSLDLSLLSKNISD----IR 581 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~---------~-~~~---~d~p~t~D~~ll~~~L~~----L~ 581 (818)
+|||+|++||||||+++.|++ +|+.++++|++.+..-. . .+. +...+.+|...|.+.+.. ++
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 589999999999999999999 89999999999876210 1 111 123467888888776543 34
Q ss_pred cCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-
Q 003460 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 660 (818)
Q Consensus 582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~- 660 (818)
.-+.+.+|.+......... ......++|+|+.+++...+...+|..|+|++|.+.++.|.+.||. .+.+.
T Consensus 80 ~l~~i~hp~i~~~~~~~~~-----~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~----~s~~~~ 150 (179)
T cd02022 80 KLEAITHPLIRKEIEEQLA-----EARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRDG----LSEEEA 150 (179)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcCC----CCHHHH
Confidence 4456777776655433221 0111369999999999888889999999999999999999999983 23222
Q ss_pred hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (818)
Q Consensus 661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (818)
.+.+....+. ++.+..||++|.|+.+
T Consensus 151 ~~r~~~Q~~~-----~~~~~~aD~vI~N~~~ 176 (179)
T cd02022 151 EARIASQMPL-----EEKRARADFVIDNSGS 176 (179)
T ss_pred HHHHHhcCCH-----HHHHHhCCEEEECcCC
Confidence 1222222222 2345789999998743
No 77
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.40 E-value=1.9e-13 Score=137.76 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=104.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch----hh-----h----hcccCCCcccccHHHHHHHHH----HH
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ-----V----KDFKYDDFSSLDLSLLSKNIS----DI 580 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~----~~-----~----~~~~~d~p~t~D~~ll~~~L~----~L 580 (818)
++|||+|+.||||||+++.|++ +|+.++++|...+. .. . +..-++.-+++|...|.+.+. .+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 5899999999999999999999 99999999988664 11 0 111123447788888887652 23
Q ss_pred hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (818)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (818)
+.-+.+.+|........+.. .....+++++|..+++...+...+|..|+|.+|.++++.|.+.|| |.+.+.
T Consensus 80 ~~L~~iihP~I~~~~~~~~~-----~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~~~ 150 (180)
T PF01121_consen 80 KKLENIIHPLIREEIEKFIK-----RNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSEEE 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTHHH
T ss_pred HHHHHHHhHHHHHHHHHHHH-----hccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhC----CCcHHH
Confidence 33345666765444332221 111127999999999998999999999999999999999999997 444433
Q ss_pred -hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
.+......|..++ ++.||+||+|+-
T Consensus 151 ~~~ri~~Q~~~~~k-----~~~ad~vI~N~g 176 (180)
T PF01121_consen 151 AEARIASQMPDEEK-----RKRADFVIDNNG 176 (180)
T ss_dssp HHHHHHTS--HHHH-----HHH-SEEEE-SS
T ss_pred HHHHHHhCCCHHHH-----HHhCCEEEECCC
Confidence 3444445555444 368999999973
No 78
>PLN02796 D-glycerate 3-kinase
Probab=99.37 E-value=4e-12 Score=138.76 Aligned_cols=153 Identities=18% Similarity=0.280 Sum_probs=111.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccc----------------cCCCCCcccHHHHHHHH
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVD----------------EGNDLDSIDFDALVQNL 118 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~----------------~~~~~~~~d~~~l~~~L 118 (818)
.++++|||+|++||||||+++.|+..+. +..|++|+||.... -++.|.++|...+.+.|
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L 177 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALLELRGNAGSHDLALGVETL 177 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHHHH
Confidence 4689999999999999999999999884 56799999986321 12446789999999998
Q ss_pred Hhhh----cCCccccccchhhhhc----ccccc--ccccCCccEEEEEecccchh-------------------------
Q 003460 119 QDLT----EGKDTLIPMFDYQQKN----RIGSK--VIKGASSGVVIVDGTYALDA------------------------- 163 (818)
Q Consensus 119 ~~l~----~~~~i~~p~~d~~~~~----~~~~~--~~~~~~~~vVIvEG~~l~~~------------------------- 163 (818)
..++ .+..+.+|.||+..+. |.... .....+.+|||+||+++...
T Consensus 178 ~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~~vN~~L~~y~ 257 (347)
T PLN02796 178 EALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLEVVNKNLEAYY 257 (347)
T ss_pred HHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHHHHHHHHHHHH
Confidence 8887 5778999999999865 43221 12335678999999988651
Q ss_pred -hhhcCCCEEEEEEcC-HHHHHHHHHHhcc------CCCc---CHHHHHHhhchhhhhcc
Q 003460 164 -RLRSLLDIRVAVVGG-VHFSLISKVQYDI------GDSC---SLDSLIDSIFPLFRKHI 212 (818)
Q Consensus 164 -~l~~~~D~~I~Vda~-~e~~l~Rri~Rd~------~~~~---s~e~~~~~~~p~~~~~I 212 (818)
.+...+|.-|.+.++ .+.-.+||.+.+. .... .+.+++++++|.|+.|.
T Consensus 258 ~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v~~FV~~~mP~y~~y~ 317 (347)
T PLN02796 258 DAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEVADFVSRYMPAYKAYL 317 (347)
T ss_pred HHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 222356788888876 5555666644432 1123 45566678899888875
No 79
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.36 E-value=2.4e-12 Score=129.73 Aligned_cols=139 Identities=19% Similarity=0.224 Sum_probs=113.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-------------Ccccccccccchhhh---------hcccCCCcccccHH
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-------------CEVVSLESYFKSEQV---------KDFKYDDFSSLDLS 571 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg-------------~~vis~Ddfy~~~~~---------~~~~~d~p~t~D~~ 571 (818)
.+....+|++|++|+||||++..+.++.. +.++.||.|+...+. +....+.|-|||-+
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~ 195 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSN 195 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHH
Confidence 44567899999999999999999987432 346899999876321 12235678999999
Q ss_pred HHHHHHHHHh--cCCceecccccccccccCCCcceeeecCCcEEEEEecccch-----HhhhhcCCEEEEEEcChhHHHH
Q 003460 572 LLSKNISDIR--NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLI 644 (818)
Q Consensus 572 ll~~~L~~L~--~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~ 644 (818)
++.+.+..|+ .-..+.+|.||+..+|.++. .+-+.....|||+||.|++. ..+.+.+|.+.|++.+.+...+
T Consensus 196 lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~D-dicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~ 274 (323)
T KOG2702|consen 196 LFLQLCKILKKTTIPDIYVPSFDHALGDPVPD-DICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEE 274 (323)
T ss_pred HHHHHHHHHhhcCCCceeccccccccCCCCcc-ceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHH
Confidence 9999999988 45679999999999998874 45555668999999999974 4577889999999999999999
Q ss_pred HHHhcCccc
Q 003460 645 SRVQRDKSR 653 (818)
Q Consensus 645 Rri~Rd~~~ 653 (818)
|...|.+..
T Consensus 275 RVa~RHl~s 283 (323)
T KOG2702|consen 275 RVAKRHLQS 283 (323)
T ss_pred HHHHHhhcc
Confidence 999998765
No 80
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.36 E-value=1.7e-12 Score=133.21 Aligned_cols=161 Identities=14% Similarity=0.089 Sum_probs=111.8
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh---------hccc---CCCcccccHHHHHHHHHH--
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV---------KDFK---YDDFSSLDLSLLSKNISD-- 579 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~---------~~~~---~d~p~t~D~~ll~~~L~~-- 579 (818)
...|++|||+|++||||||+++.|++.+|+.+++.|...+.--. ..++ ++ .+.+|...|.+.+..
T Consensus 3 ~~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~ 81 (204)
T PRK14733 3 FINTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESK 81 (204)
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCH
Confidence 34689999999999999999999999899999999988665210 1111 12 367888888876532
Q ss_pred --HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhh--hhcCCEEEEEEcChhHHHHHHHhcCccccC
Q 003460 580 --IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEI--RKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (818)
Q Consensus 580 --L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l--~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg 655 (818)
++.-+.+.+|........+.. ..+..++++|..+++...+ ...+|..|+|++|.+.++.|.+.||..
T Consensus 82 ~~~~~Le~i~HP~V~~~~~~~~~------~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~--- 152 (204)
T PRK14733 82 EAKKWLEDYLHPVINKEIKKQVK------ESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLMERDGK--- 152 (204)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH------hcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHHHcCCC---
Confidence 333345667765554432221 1123689999999987543 568999999999999999999999843
Q ss_pred cccch-hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 656 CFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 656 ~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
+.+. .+......|..++ ++.||+||+|+-
T Consensus 153 -s~~~a~~ri~~Q~~~eek-----~~~aD~VI~N~g 182 (204)
T PRK14733 153 -NRQQAVAFINLQISDKER-----EKIADFVIDNTE 182 (204)
T ss_pred -CHHHHHHHHHhCCCHHHH-----HHhCCEEEECcC
Confidence 2222 2334444444333 478999999975
No 81
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.35 E-value=1.5e-12 Score=133.34 Aligned_cols=160 Identities=15% Similarity=0.176 Sum_probs=107.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc---cCCCcc-cccHHHHHHHHHH----
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFS-SLDLSLLSKNISD---- 579 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~---~~d~p~-t~D~~ll~~~L~~---- 579 (818)
.+|||+|++||||||+++.|++.+|+.++++|++.+.-- . ..+ -....+ ++|...|.+.+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 379999999999999999999988999999999976511 0 011 122346 6888777775421
Q ss_pred HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (818)
Q Consensus 580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (818)
++.-+.+.+|..-.....+. .......++++|-.+++...+...+|..|+|++|.++++.|.+.|+ |.+.+
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~-----~~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s~e 152 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEEL-----AQLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLTEE 152 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHH-----HhcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 22222345554332222111 0111236899999999998899999999999999999999999997 33322
Q ss_pred h-hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460 660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (818)
Q Consensus 660 ~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (818)
. .+......| ++..+..||++|+|+.+
T Consensus 153 ~~~~ri~~Q~~-----~~~k~~~aD~vI~N~g~ 180 (195)
T PRK14730 153 EAEARINAQWP-----LEEKVKLADVVLDNSGD 180 (195)
T ss_pred HHHHHHHhCCC-----HHHHHhhCCEEEECCCC
Confidence 2 222222222 23446789999998743
No 82
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.33 E-value=2.6e-12 Score=131.47 Aligned_cols=159 Identities=19% Similarity=0.236 Sum_probs=107.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc---cCCCcccccHHHHHHHHH----H
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFSSLDLSLLSKNIS----D 579 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~---~~d~p~t~D~~ll~~~L~----~ 579 (818)
+.+|||+|++||||||+++.|++ +|+.++++|.+.+..- . ..+ .+...+.+|...|.+.+. .
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 46899999999999999999999 9999999999977521 0 011 122346788887777553 2
Q ss_pred HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (818)
Q Consensus 580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (818)
+..-..+.+|..-....... .......++++|+.+++...+...+|..|+|++|.+.++.|.+.|+. .+.+
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~-----~~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~----~s~e 151 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQL-----QEAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARDG----LSEE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHcCC----CCHH
Confidence 22233455555433322211 01112269999999999988889999999999999999999998863 2322
Q ss_pred h-hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 660 ~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
. .+......+.. .....||++|+|+-
T Consensus 152 ~~~~ri~~Q~~~~-----~~~~~ad~vI~N~g 178 (194)
T PRK00081 152 EAEAIIASQMPRE-----EKLARADDVIDNNG 178 (194)
T ss_pred HHHHHHHHhCCHH-----HHHHhCCEEEECCC
Confidence 2 22233233322 23467999999864
No 83
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.30 E-value=2.5e-12 Score=146.99 Aligned_cols=167 Identities=26% Similarity=0.444 Sum_probs=143.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC----------CeEEeccceeccc------------ccCCCCCcccHHHHHHH
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG----------CTLISMENYRVGV------------DEGNDLDSIDFDALVQN 117 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg----------~~vI~~D~~~~~~------------~~~~~~~~~d~~~l~~~ 117 (818)
..+++||+.|+++|||||++..+.+.++ +..++.|.||+.+ ...+.|++++.+.+...
T Consensus 42 ~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~~~ 121 (473)
T KOG4203|consen 42 KEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLYLT 121 (473)
T ss_pred cceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHHHH
Confidence 4689999999999999999999888777 3457778788732 23457899999999999
Q ss_pred HHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-c
Q 003460 118 LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-C 195 (818)
Q Consensus 118 L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~ 195 (818)
+.++..+..+..|.|++..+.+.+.......+..++++||++.++ ...+++.+.++|++.+.+.++.|++.|+...+ .
T Consensus 122 ~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~g~ 201 (473)
T KOG4203|consen 122 LKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVERGR 201 (473)
T ss_pred HhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhhcc
Confidence 999999999999999999999977766666777789999999988 78889999999999999999999999998876 4
Q ss_pred CHHHHHH----hhchhhhhccCCccccCcEEEECC
Q 003460 196 SLDSLID----SIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 196 s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
+++.+.. +..|.+..||+|+++.||++|+..
T Consensus 202 ~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~ 236 (473)
T KOG4203|consen 202 DLESILTQYSTFVKPAFEEFILPTKKYADVIIPRG 236 (473)
T ss_pred cHHHHHHHHHhhcCchHHHHhhHHHHhhhheeecc
Confidence 6555554 468999999999999999999765
No 84
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.29 E-value=7.6e-12 Score=120.60 Aligned_cols=146 Identities=20% Similarity=0.239 Sum_probs=100.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~ 142 (818)
++|.|+|++||||||+|+.||+.+|.+++++..+|+.+...-..+-.+|..+.+ ..|.+|.....+...
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE-----------~~p~iD~~iD~rq~e 69 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAE-----------EDPEIDKEIDRRQKE 69 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHh-----------cCchhhHHHHHHHHH
Confidence 379999999999999999999999999999999999776544443333333221 136667666665432
Q ss_pred cccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHh-------hchhhhhcc--C
Q 003460 143 KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDS-------IFPLFRKHI--E 213 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~-------~~p~~~~~I--e 213 (818)
.. ...-+|+||-++.+-. +...|++||+.||.++|..|...|+.. +.+++.+. -..-|.++. .
T Consensus 70 ~a----~~~nvVlegrLA~Wi~-k~~adlkI~L~Apl~vRa~Ria~REgi---~~~~a~~~~~~RE~se~kRY~~~YgID 141 (179)
T COG1102 70 LA----KEGNVVLEGRLAGWIV-REYADLKIWLKAPLEVRAERIAKREGI---DVDEALAETVEREESEKKRYKKIYGID 141 (179)
T ss_pred HH----HcCCeEEhhhhHHHHh-ccccceEEEEeCcHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11 1345899999987732 268999999999999999999999843 33333221 122333332 1
Q ss_pred -CccccCcEEEECCC
Q 003460 214 -PDLHHAQIRINNRF 227 (818)
Q Consensus 214 -p~~~~ADiII~N~~ 227 (818)
.+..-.|+||+.+.
T Consensus 142 idDlSiyDLVinTs~ 156 (179)
T COG1102 142 IDDLSIYDLVINTSK 156 (179)
T ss_pred CccceeeEEEEeccc
Confidence 33566789987663
No 85
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.28 E-value=7.3e-12 Score=128.70 Aligned_cols=161 Identities=19% Similarity=0.209 Sum_probs=108.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh----h-----h----hcccCCCcccccHHHHHHHHH----HH
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q-----V----KDFKYDDFSSLDLSLLSKNIS----DI 580 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~----~-----~----~~~~~d~p~t~D~~ll~~~L~----~L 580 (818)
.+|||+|++||||||+++.|+. +|+.+++.|+..+.. . . +..-.+..+++|...|.+.+. .+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 5799999999999999999998 899999999865541 1 0 111123457888888877653 22
Q ss_pred hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (818)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (818)
+.-+.+.+|..-.....+.. . ....+..++++|..+++...+.+.+|.+|||++|.++++.|.+.|+ |.+.+.
T Consensus 81 ~~le~i~hP~v~~~~~~~~~--~-~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~----g~s~e~ 153 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFN--E-ARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRRLVEKR----GLDEDD 153 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHH--H-HHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 22334556654332221110 0 0012346899999999888888899999999999999999999885 443332
Q ss_pred -hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (818)
Q Consensus 661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (818)
........+.+.. ...||++|+|+.+
T Consensus 154 ~~~ri~~Q~~~~~k-----~~~ad~vI~N~g~ 180 (200)
T PRK14734 154 ARRRIAAQIPDDVR-----LKAADIVVDNNGT 180 (200)
T ss_pred HHHHHHhcCCHHHH-----HHhCCEEEECcCC
Confidence 2334434444332 3689999998754
No 86
>PLN02422 dephospho-CoA kinase
Probab=99.24 E-value=1.4e-11 Score=128.62 Aligned_cols=161 Identities=19% Similarity=0.161 Sum_probs=110.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc---cCCCcccccHHHHHHHHH----HH
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFSSLDLSLLSKNIS----DI 580 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~---~~d~p~t~D~~ll~~~L~----~L 580 (818)
.+|||+|++||||||+++.|++ +|+.++++|+..+.-- . ..+ -++..+++|...|.+.+. .+
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 3799999999999999999994 8999999999877511 0 111 123457889888887663 23
Q ss_pred hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (818)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (818)
+.-+.+.+|..-.....+.. ... ..+.+++++|..+++...+.+.+|..|+|++|.+.+++|.+.|+ |.+.+.
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~--~~~-~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~----g~s~ee 153 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEIL--KLW-LKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARD----GLSEEQ 153 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHH--HHH-hcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 33345666765333221110 000 11236999999999988888899999999999999999999997 333332
Q ss_pred -hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (818)
Q Consensus 661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (818)
........|... ....||++|.|+.+
T Consensus 154 a~~Ri~~Q~~~ee-----k~~~AD~VI~N~gs 180 (232)
T PLN02422 154 ARNRINAQMPLDW-----KRSKADIVIDNSGS 180 (232)
T ss_pred HHHHHHHcCChhH-----HHhhCCEEEECCCC
Confidence 233333334332 25679999999854
No 87
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.22 E-value=1.4e-11 Score=126.02 Aligned_cols=158 Identities=16% Similarity=0.221 Sum_probs=107.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc---cCCCcccccHHHHHHHHH----HHh
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFSSLDLSLLSKNIS----DIR 581 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~---~~d~p~t~D~~ll~~~L~----~L~ 581 (818)
+|||+|++||||||+++.|+. +|+.+++.|...+..- . ..+ -++..+.+|...|.+.+. .++
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 489999999999999999976 7999999998866411 0 111 123347788888887653 233
Q ss_pred cCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-
Q 003460 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 660 (818)
Q Consensus 582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~- 660 (818)
.-+.+.+|..-........ . .....++|+|..+++...+...+|..|||++|.++++.|.+.|+ |.+.++
T Consensus 80 ~L~~i~hP~v~~~~~~~~~--~---~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~----g~s~e~a 150 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQ--T---TAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISRD----GMKKEDV 150 (196)
T ss_pred HHHHHhhHHHHHHHHHHHH--H---HhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 3344666665443322110 1 11236899999999988888899999999999999999999996 333332
Q ss_pred hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (818)
Q Consensus 661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (818)
........| +.+....||++|.|+.+
T Consensus 151 ~~ri~~Q~~-----~~~k~~~aD~vI~N~~~ 176 (196)
T PRK14732 151 LARIASQLP-----ITEKLKRADYIVRNDGN 176 (196)
T ss_pred HHHHHHcCC-----HHHHHHhCCEEEECCCC
Confidence 222222222 34456789999998753
No 88
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.22 E-value=2.3e-11 Score=128.17 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=106.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc---cCCCcccccHHHHHHHHH----HH
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF---KYDDFSSLDLSLLSKNIS----DI 580 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~---~~d~p~t~D~~ll~~~L~----~L 580 (818)
++|||+|+.||||||+++.|.+.+|+.++++|...+.-- . ..+ -.+..+.+|...|.+.+. .+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 689999999999999999999988999999998876511 1 011 122247899988888652 22
Q ss_pred hcCCceecccccccccccCCC------cceeeecCCcEEEEEecccchHhh-hhcCCEEEEEEcChhHHHHHHHhcCccc
Q 003460 581 RNGRRTKVPIFDLETGARSGF------KELEVSEDCGVIIFEGVYALHPEI-RKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (818)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~------~~~~~~~~~~vvIvEG~~~~~~~l-~~~~D~~I~v~~~~d~rl~Rri~Rd~~~ 653 (818)
+.-+.+.+|..-.....+... ..........++++|..++++..+ ...+|..|+|+++.+.++.|.+.|+
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~R~--- 158 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRKRN--- 158 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHHcC---
Confidence 333445666543322111100 000001123599999999998764 4578999999999999999999885
Q ss_pred cCcccch-hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 654 MGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 654 rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
|.+.++ .+......+. ...+..||+||.|+
T Consensus 159 -g~s~eea~~Ri~~Q~~~-----~ek~~~aD~VI~N~ 189 (244)
T PTZ00451 159 -GFSKEEALQRIGSQMPL-----EEKRRLADYIIEND 189 (244)
T ss_pred -CCCHHHHHHHHHhCCCH-----HHHHHhCCEEEECC
Confidence 333332 2233333332 22357899999997
No 89
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.17 E-value=1.9e-10 Score=116.59 Aligned_cols=173 Identities=16% Similarity=0.155 Sum_probs=108.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc---cCCCCCcccHHHHHHHHHhhh-----------cCCcc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD---EGNDLDSIDFDALVQNLQDLT-----------EGKDT 127 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~---~~~~~~~~d~~~l~~~L~~l~-----------~~~~i 127 (818)
.++|+|+||+||||||+|+.||+.||..++++..+|+.+. -....+.-|.+.+.+.+..+. .|+++
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv 83 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV 83 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence 3899999999999999999999999999999999999432 112233334444444443221 11122
Q ss_pred ccccchhhhhccc--------------cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCC
Q 003460 128 LIPMFDYQQKNRI--------------GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGD 193 (818)
Q Consensus 128 ~~p~~d~~~~~~~--------------~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~ 193 (818)
....-.......+ ..+........-+|+||-=+.. .+.+.++++||+++++++|.+||.+-....
T Consensus 84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT-vV~PdA~lKiFLtAS~e~RA~RR~~q~~~~ 162 (222)
T COG0283 84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT-VVFPDAELKIFLTASPEERAERRYKQLQAK 162 (222)
T ss_pred hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc-eECCCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 1111111111110 0000001122448899875543 445778999999999999999998876555
Q ss_pred Cc--CHHHHHH----hhchhhhhccCCccccCcEEEECCCCCChhhhh
Q 003460 194 SC--SLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFVSSFREAI 235 (818)
Q Consensus 194 ~~--s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~~~~~~~~~~ 235 (818)
.. ..+++.+ +-.....+-+.|.++..|.++..+..++++|-.
T Consensus 163 g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv 210 (222)
T COG0283 163 GFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVV 210 (222)
T ss_pred cCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHH
Confidence 42 2455554 335566666789999999877666567766544
No 90
>PRK01184 hypothetical protein; Provisional
Probab=99.15 E-value=1.6e-10 Score=116.99 Aligned_cols=154 Identities=18% Similarity=0.176 Sum_probs=88.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-cCCCCCcccHHHHHHHHHhhhc--CCccccccchhhhhc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTE--GKDTLIPMFDYQQKN 138 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-~~~~~~~~d~~~l~~~L~~l~~--~~~i~~p~~d~~~~~ 138 (818)
|++|+|+|++||||||+|+ +++.+|+.++++|+..+... ..+.+... +.+.+....+.. +..+ +....+.
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~----~~~~~~~ 73 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTD--ENIGKVAIDLRKELGMDA----VAKRTVP 73 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCc--HHHHHHHHHHHHHHChHH----HHHHHHH
Confidence 5689999999999999998 56778999999988654322 22211111 111221111111 0000 0011111
Q ss_pred cccccccccCCccEEEEEecccch--hhhhcCCC---EEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHhhchhhhhcc
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALD--ARLRSLLD---IRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHI 212 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D---~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~~~p~~~~~I 212 (818)
.+ ......++|++|+.... ..+++.++ ..|+|+++.+.+..|...|+.... .+.+.+.++...+...-+
T Consensus 74 ~i-----~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~ 148 (184)
T PRK01184 74 KI-----REKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGI 148 (184)
T ss_pred HH-----HhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCH
Confidence 11 11234689999984332 34444555 899999999999999998874322 244555544333211112
Q ss_pred CCccccCcEEEECCC
Q 003460 213 EPDLHHAQIRINNRF 227 (818)
Q Consensus 213 ep~~~~ADiII~N~~ 227 (818)
+...+.||++|+|+.
T Consensus 149 ~~~~~~ad~vI~N~~ 163 (184)
T PRK01184 149 GEVIALADYMIVNDS 163 (184)
T ss_pred HHHHHhcCEEEeCCC
Confidence 334578999999874
No 91
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.15 E-value=9.6e-11 Score=121.21 Aligned_cols=163 Identities=21% Similarity=0.261 Sum_probs=100.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc-----cCCCccc--ccHHHHHHHH
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF-----KYDDFSS--LDLSLLSKNI 577 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~-----~~d~p~t--~D~~ll~~~L 577 (818)
..+++|||+|++||||||+++.|.. +|+.+++.|...+.-. . ..+ ..+..+. +|...|.+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~v 81 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVV 81 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHH
Confidence 4578999999999999999999997 8999999997755310 0 001 0111222 6666655433
Q ss_pred H----HHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccc
Q 003460 578 S----DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (818)
Q Consensus 578 ~----~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~ 653 (818)
. .++.-+.+.+|..-........ .. ...+..++++|+.+++...+...+|..|+|++|.+++..|.+.|+..
T Consensus 82 f~~~~~~~~l~~i~hp~i~~~~~~~i~--~~-~~~~~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~~- 157 (208)
T PRK14731 82 FSDPEKLGALNRLIHPKVFAAFQRAVD--RA-ARRGKRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQRGMG- 157 (208)
T ss_pred hCCHHHHHHHHHHHCHHHHHHHHHHHH--HH-HhcCCCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHcCCC-
Confidence 1 1222223444543222111110 00 01234689999998888777788999999999999999999999632
Q ss_pred cCcccch-hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 654 MGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 654 rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
+.+. .+......+... . ...||++|.|+-
T Consensus 158 ---s~e~~~~Ri~~q~~~~~-~----~~~ad~vI~N~g 187 (208)
T PRK14731 158 ---SREEIRRRIAAQWPQEK-L----IERADYVIYNNG 187 (208)
T ss_pred ---CHHHHHHHHHHcCChHH-H----HHhCCEEEECCC
Confidence 2221 223333333222 2 246999999864
No 92
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.14 E-value=5e-11 Score=122.00 Aligned_cols=160 Identities=18% Similarity=0.216 Sum_probs=102.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh---------hhhcccCC-----CcccccHHHHHHHHH----
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE---------QVKDFKYD-----DFSSLDLSLLSKNIS---- 578 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~---------~~~~~~~d-----~p~t~D~~ll~~~L~---- 578 (818)
+.+|||+|++||||||+|+.+++ +|++++++|++.+.- ...+ .|+ .-+.+|...|.+.+.
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~-~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAE-RFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHH-HcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 57999999999999999999999 999999999998841 1111 122 234556665555431
Q ss_pred HHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCccc
Q 003460 579 DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (818)
Q Consensus 579 ~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~ 658 (818)
.+..-+.+.+|....... .. ... ....++++|-.+++.......+|..|.|++|.+++++|.+.|+...++.
T Consensus 80 ~~~~Le~i~hPli~~~~~-~~----~~~-~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~~~e~-- 151 (201)
T COG0237 80 ARLKLEKILHPLIRAEIK-VV----IDG-ARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGLDEED-- 151 (201)
T ss_pred HHHHHHHhhhHHHHHHHH-HH----HHH-hhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcCCCCHHH--
Confidence 122223344554222211 00 000 1112788888887776566669999999999999999999998222111
Q ss_pred chhhHHHhhcchhhhhccccCCcccEEEeCCCCC
Q 003460 659 SQNDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (818)
Q Consensus 659 ~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (818)
.........+..++ ...||+|++|++..
T Consensus 152 -~~~~~~~Q~~~~ek-----~~~ad~vi~n~~~i 179 (201)
T COG0237 152 -AEARLASQRDLEEK-----LALADVVIDNDGSI 179 (201)
T ss_pred -HHHHHHhcCCHHHH-----HhhcCChhhcCCCH
Confidence 12233334455554 37899999998754
No 93
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.14 E-value=1.5e-10 Score=111.98 Aligned_cols=139 Identities=17% Similarity=0.227 Sum_probs=86.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (818)
+|.|+|++||||||+|+.|++.+|+++++.|.+..... ........ ..+.++........ .
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-------------~~~~~~~~-----~~~~i~~~l~~~~~-~ 61 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-------------GKLASEVA-----AIPEVRKALDERQR-E 61 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH-------------HHHHHHhc-----ccHhHHHHHHHHHH-H
Confidence 58999999999999999999999999999995432110 00000000 00011111111000 0
Q ss_pred ccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHhh----chhhhhccCCccc
Q 003460 144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSI----FPLFRKHIEPDLH 217 (818)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~~----~p~~~~~Iep~~~ 217 (818)
. .....+|+||.++... +.+.+|++||+++|.+.+..|+..|+...+ .+.+++.+.+ .+.+..|+.++..
T Consensus 62 ~---~~~~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 137 (147)
T cd02020 62 L---AKKPGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAPLKL 137 (147)
T ss_pred H---hhCCCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhcccccccC
Confidence 1 1123488899876432 245689999999999999999999764322 3666655433 5566778888764
Q ss_pred c-CcEEEEC
Q 003460 218 H-AQIRINN 225 (818)
Q Consensus 218 ~-ADiII~N 225 (818)
. -|++|+.
T Consensus 138 ~~~dl~i~~ 146 (147)
T cd02020 138 AEDAIVIDT 146 (147)
T ss_pred CCCcEEEeC
Confidence 4 4577764
No 94
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.14 E-value=7.5e-11 Score=119.91 Aligned_cols=160 Identities=17% Similarity=0.197 Sum_probs=104.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh----h-----h-hcc---cCCCcccccHHHHHHHHH----HHh
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE----Q-----V-KDF---KYDDFSSLDLSLLSKNIS----DIR 581 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~----~-----~-~~~---~~d~p~t~D~~ll~~~L~----~L~ 581 (818)
+|||+|++||||||+++.|++..|+.++++|.+.+.- . . ..+ -++..+..|...|.+.+. .+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 5899999999999999999997679999999996541 0 0 111 123346777777776552 122
Q ss_pred cCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-
Q 003460 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 660 (818)
Q Consensus 582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~- 660 (818)
.-+.+..|.+-........ . ......++++|..+++...+...+|..++++++.++++.|.+.|+ |.+.+.
T Consensus 81 ~le~ilhP~i~~~i~~~i~--~--~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~ 152 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLA--Q--FQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEEEV 152 (188)
T ss_pred HHHHhhCHHHHHHHHHHHH--H--hhcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 2234455554333322110 0 011225889999888777788899999999999999999999998 333332
Q ss_pred hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (818)
Q Consensus 661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (818)
.+......+.+ ..+..||++|.|+.+
T Consensus 153 ~~r~~~q~~~~-----~~~~~ad~vI~N~~~ 178 (188)
T TIGR00152 153 QKRLASQMDIE-----ERLARADDVIDNSAT 178 (188)
T ss_pred HHHHHhcCCHH-----HHHHhCCEEEECCCC
Confidence 22333223222 335679999998743
No 95
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.11 E-value=8.8e-11 Score=110.11 Aligned_cols=116 Identities=25% Similarity=0.344 Sum_probs=76.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcc--cccHHHHHHHHHHHhcCCceeccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFS--SLDLSLLSKNISDIRNGRRTKVPIFDLETG 596 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~--t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~ 596 (818)
+|+|+|+|||||||+|+.|++.+|+.++++|+++..........+.+. ..+.+.+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN-------------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE--------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc--------------
Confidence 689999999999999999999999999999995443222211111111 2234445555554322
Q ss_pred ccCCCcceeeecCCcEEEEEecccchHh-hhhcCCEEEEEEcChhHHHHHHHhcCccccCccc
Q 003460 597 ARSGFKELEVSEDCGVIIFEGVYALHPE-IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (818)
Q Consensus 597 ~r~~~~~~~~~~~~~vvIvEG~~~~~~~-l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~ 658 (818)
....+.+|+||.+..... .....|..||++.+.+.++.|++.|...++|+..
T Consensus 67 ----------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~~ 119 (121)
T PF13207_consen 67 ----------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRDR 119 (121)
T ss_dssp ----------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESSC
T ss_pred ----------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCCC
Confidence 123578999996651111 2234568899999888788888888777777653
No 96
>COG4240 Predicted kinase [General function prediction only]
Probab=99.09 E-value=3.4e-10 Score=114.39 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=83.2
Q ss_pred HHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C---CeEEeccceecccc--------------cCCCCCcccHHHHH
Q 003460 56 REKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G---CTLISMENYRVGVD--------------EGNDLDSIDFDALV 115 (818)
Q Consensus 56 ~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g---~~vI~~D~~~~~~~--------------~~~~~~~~d~~~l~ 115 (818)
..+.++|+++||+||.||||||++..|...| | +..+|.||||.+.. -++-|+++|...+.
T Consensus 44 ~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 44 AQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred hhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 3455679999999999999999999988766 3 45689999988543 24568999999999
Q ss_pred HHHHhhhcCCc-cccccchh----hhhccccccccccCCccEEEEEecccch
Q 003460 116 QNLQDLTEGKD-TLIPMFDY----QQKNRIGSKVIKGASSGVVIVDGTYALD 162 (818)
Q Consensus 116 ~~L~~l~~~~~-i~~p~~d~----~~~~~~~~~~~~~~~~~vVIvEG~~l~~ 162 (818)
..|+.+.+|++ +.+|.||+ ..++|.........+.+++|+||+++..
T Consensus 124 nVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGf 175 (300)
T COG4240 124 NVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGF 175 (300)
T ss_pred HHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeec
Confidence 99999988765 68899999 4555543323333447899999999865
No 97
>PRK06217 hypothetical protein; Validated
Probab=99.08 E-value=6.9e-10 Score=112.41 Aligned_cols=106 Identities=17% Similarity=0.153 Sum_probs=72.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (818)
|..|.|+|++||||||+|+.|++.+|++++++|+++..-.+......-..+...+.+..
T Consensus 1 ~~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 59 (183)
T PRK06217 1 MMRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLE--------------------- 59 (183)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCCHHHHHHHHHH---------------------
Confidence 45699999999999999999999999999999999763221000000000111111110
Q ss_pred ccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 003460 142 SKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (818)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~ 192 (818)
.+. ...-+|+||.+... ..+...+|.+|||++|.+.++.|...|...
T Consensus 60 --~~~--~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 60 --DLR--PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred --HHh--cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence 000 11247889998754 556678999999999999999999998743
No 98
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.08 E-value=9.2e-10 Score=114.53 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=99.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc----cCCCCCcccHHHHHHHHHhhh--------------cC
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLT--------------EG 124 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~~~~~~d~~~l~~~L~~l~--------------~~ 124 (818)
++|+|+|++||||||+++.|++.+|..++++|++|+... ..+ ...-+...+...+..+. .+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNR-VDLTSEDALAELISHLDIRFIPTNGEVEVFLNG 81 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcC-CCCCCHHHHHHHHHhCCCEEecCCCceeEEEcC
Confidence 689999999999999999999999999999999987431 111 11112233333322110 00
Q ss_pred Ccc-----------------ccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHH
Q 003460 125 KDT-----------------LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKV 187 (818)
Q Consensus 125 ~~i-----------------~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri 187 (818)
+++ .+|.+......... ......-+|+||..+... +.+..|++||++++.+.+.+|+.
T Consensus 82 ~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~qr----~~a~~~~~Vi~Gr~~~~~-v~~~a~~~ifl~a~~~~Ra~Rr~ 156 (217)
T TIGR00017 82 EDVSEAIRTQEVANAASKVAVFPKVREALLKRQQ----ALAKNDGIIADGRDIGTV-VFPNAEVKIFLDASVEERAKRRY 156 (217)
T ss_pred cchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHHH----HHhhcCCEEEEEcCcceE-EeCCCCEEEEEECCHHHHHHHHH
Confidence 010 11111111111111 011223599999975543 33448999999999999999999
Q ss_pred HhccCC--CcCHHHHHHhhch----hhhhccCCccccCcEEEECCCCCChhhh
Q 003460 188 QYDIGD--SCSLDSLIDSIFP----LFRKHIEPDLHHAQIRINNRFVSSFREA 234 (818)
Q Consensus 188 ~Rd~~~--~~s~e~~~~~~~p----~~~~~Iep~~~~ADiII~N~~~~~~~~~ 234 (818)
.|.... ..+.+++.+.+.. ...+...|.....|.++.++-.+++++-
T Consensus 157 ~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l~ieev 209 (217)
T TIGR00017 157 KQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNLSIDEV 209 (217)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCCCHHHH
Confidence 987554 2455666655422 3444556776666666555545555443
No 99
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.07 E-value=6.3e-10 Score=107.62 Aligned_cols=142 Identities=18% Similarity=0.220 Sum_probs=88.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
||.|+|++||||||+|+.|+..+|.+++++|....... .......+ +...+.+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~-~~~~~~~~---~~~~i~~~l~~~~~---------------- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEV-GKLASEVA---AIPEVRKALDERQR---------------- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHH-HHHHHHhc---ccHhHHHHHHHHHH----------------
Confidence 58999999999999999999999999999996544311 10000000 01111222221110
Q ss_pred CCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCcccc-Ccccch--hhHHHhhcchhhhhc
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM-GCFMSQ--NDIMMTVFPMFQQHI 675 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r-g~~~~~--~~~~~~v~p~~~~~I 675 (818)
.. .....+|+||+++.+- +.+.+|+.||++++.+.+..|++.|+...+ |.+.+. ..+...-.+.+..|+
T Consensus 61 ----~~---~~~~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 132 (147)
T cd02020 61 ----EL---AKKPGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYV 132 (147)
T ss_pred ----HH---hhCCCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence 00 1113478899987542 245689999999999999999999874322 333333 233344456678888
Q ss_pred cccC-CcccEEEeC
Q 003460 676 EPHL-VHAHLKIRN 688 (818)
Q Consensus 676 ~p~~-~~ADivI~n 688 (818)
.++. ...|++|+.
T Consensus 133 ~~~~~~~~dl~i~~ 146 (147)
T cd02020 133 APLKLAEDAIVIDT 146 (147)
T ss_pred ccccCCCCcEEEeC
Confidence 8885 455688775
No 100
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.04 E-value=2.6e-10 Score=110.18 Aligned_cols=114 Identities=26% Similarity=0.343 Sum_probs=83.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~ 597 (818)
.+|.|+|++||||||+|+.|++.+|..++|...+|+.-... .+ +++..+.+.- -..|.+|+....
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e-~g------msl~ef~~~A--------E~~p~iD~~iD~ 65 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE-RG------MSLEEFSRYA--------EEDPEIDKEIDR 65 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH-cC------CCHHHHHHHH--------hcCchhhHHHHH
Confidence 36899999999999999999999999999999999863221 11 2333333211 136777777665
Q ss_pred cCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCcc
Q 003460 598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 652 (818)
Q Consensus 598 r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~ 652 (818)
|.. +. .. .+-+|+||-+++|-. +...|++||+.+|.++|..|-..|+..
T Consensus 66 rq~--e~--a~-~~nvVlegrLA~Wi~-k~~adlkI~L~Apl~vRa~Ria~REgi 114 (179)
T COG1102 66 RQK--EL--AK-EGNVVLEGRLAGWIV-REYADLKIWLKAPLEVRAERIAKREGI 114 (179)
T ss_pred HHH--HH--HH-cCCeEEhhhhHHHHh-ccccceEEEEeCcHHHHHHHHHHhcCC
Confidence 542 11 12 467899999998722 267899999999999999999999843
No 101
>PRK04182 cytidylate kinase; Provisional
Probab=99.04 E-value=4.5e-10 Score=112.56 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=82.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (818)
+|+|+|++||||||+|+.|++.+|..++++|++++......... ...+.+. +. ..+.++........ .
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~---~~~~~~~------~~--~~~~~~~~~~~~~~-~ 69 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMS---LEEFNKY------AE--EDPEIDKEIDRRQL-E 69 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCC---HHHHHHH------hh--cCchHHHHHHHHHH-H
Confidence 79999999999999999999999999999988766443221111 1111110 00 01111111111110 0
Q ss_pred ccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH-HHHhhc---hhhhhcc---CCcc
Q 003460 144 VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS-LIDSIF---PLFRKHI---EPDL 216 (818)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~-~~~~~~---p~~~~~I---ep~~ 216 (818)
. ......+|++|.+... .+.+..++.|||++|.+.+++|...|+......... +.+... ..|..+. .+..
T Consensus 70 -~-~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~ 146 (180)
T PRK04182 70 -I-AEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDL 146 (180)
T ss_pred -H-HhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 1 1012346678764422 112347899999999999999998886322111111 111111 1122222 3445
Q ss_pred ccCcEEEECCC
Q 003460 217 HHAQIRINNRF 227 (818)
Q Consensus 217 ~~ADiII~N~~ 227 (818)
+.||++|+++.
T Consensus 147 ~~~d~~idt~~ 157 (180)
T PRK04182 147 SIYDLVINTSR 157 (180)
T ss_pred ccccEEEECCC
Confidence 78999999874
No 102
>PRK06217 hypothetical protein; Validated
Probab=99.03 E-value=7.5e-10 Score=112.15 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=74.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
.|.|+|++||||||+|+.|++.+|..++++|++++...... +...... -..+...+..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~----------------- 62 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPP--FTTKRPP-EERLRLLLEDLR----------------- 62 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCC--ccccCCH-HHHHHHHHHHHh-----------------
Confidence 48899999999999999999999999999999997432111 1111111 111111122211
Q ss_pred CCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccc
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~ 653 (818)
..+-+|+||.+... ..+...+|..||+++|.+.++.|...|....
T Consensus 63 ----------~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~ 108 (183)
T PRK06217 63 ----------PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQR 108 (183)
T ss_pred ----------cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcccc
Confidence 01347889998764 5567789999999999999999999997653
No 103
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.03 E-value=6.6e-10 Score=110.52 Aligned_cols=155 Identities=21% Similarity=0.215 Sum_probs=86.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~ 142 (818)
++|+|+|++||||||+|+.|++.+|+++++.|++++........ +...+..... .. |.+..........
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~---~~-----~~~~~~~~~~i~~ 69 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGL---DLIEFLNYAE---EN-----PEIDKKIDRRIHE 69 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCC---CHHHHHHHHh---cC-----cHHHHHHHHHHHH
Confidence 37999999999999999999999999999998876543321111 1111111100 00 1111111111100
Q ss_pred cccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH-HHHhh---chhhhhcc---CCc
Q 003460 143 KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS-LIDSI---FPLFRKHI---EPD 215 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~-~~~~~---~p~~~~~I---ep~ 215 (818)
. ......+|++|.+... .+...+|++|||++|.+.+.+|...|+......... +..+. ...|..+. .-.
T Consensus 70 -~--~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~ 145 (171)
T TIGR02173 70 -I--ALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDD 145 (171)
T ss_pred -H--HhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 0 0012357779976532 234568999999999999999999987432221111 11111 11122222 234
Q ss_pred cccCcEEEECCCCCChhh
Q 003460 216 LHHAQIRINNRFVSSFRE 233 (818)
Q Consensus 216 ~~~ADiII~N~~~~~~~~ 233 (818)
...-|++|+++ ..++++
T Consensus 146 ~~~ydl~i~t~-~~~~~~ 162 (171)
T TIGR02173 146 LSIYDLVINTS-NWDPNN 162 (171)
T ss_pred cccccEEEECC-CCCHHH
Confidence 46678888776 445554
No 104
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.02 E-value=1.1e-09 Score=126.21 Aligned_cols=171 Identities=17% Similarity=0.159 Sum_probs=101.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc---cCCCCCcccHHHHHHHHHhhh--------cCCcccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD---EGNDLDSIDFDALVQNLQDLT--------EGKDTLI 129 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~---~~~~~~~~d~~~l~~~L~~l~--------~~~~i~~ 129 (818)
++.+|+|+|++||||||+|+.|++.||..++++|++|+.+. .....+.-+...+...+..+. .+..+..
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~ 362 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWI 362 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEe
Confidence 55899999999999999999999999999999999999531 111122223333433333221 1123455
Q ss_pred ccchhhhhccccc--------------------cccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 003460 130 PMFDYQQKNRIGS--------------------KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY 189 (818)
Q Consensus 130 p~~d~~~~~~~~~--------------------~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~R 189 (818)
+.++....-+... .........-+|+||--+.. .+.+.+|++|||+|+.+.+.+||..+
T Consensus 363 ~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt-vV~P~AdlKIfL~As~evRa~RR~~~ 441 (512)
T PRK13477 363 NGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT-HVFPDAELKIFLTASVEERARRRALD 441 (512)
T ss_pred CCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee-EEcCCCCEEEEEECCHHHHHHHHHhh
Confidence 5444332211100 00000112248999986654 23356899999999999999998766
Q ss_pred ccCCC---cCHHHHHH----hhchhhhhccCCcccc-CcEEEECCCCCChhh
Q 003460 190 DIGDS---CSLDSLID----SIFPLFRKHIEPDLHH-AQIRINNRFVSSFRE 233 (818)
Q Consensus 190 d~~~~---~s~e~~~~----~~~p~~~~~Iep~~~~-ADiII~N~~~~~~~~ 233 (818)
..... .+.+++.+ +......+.+.|.... ++++|+++. .++++
T Consensus 442 l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~-lsiee 492 (512)
T PRK13477 442 LQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDG-LSIEE 492 (512)
T ss_pred hhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCC-CCHHH
Confidence 32111 23444333 3344455556676665 567787773 44433
No 105
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.02 E-value=4.8e-10 Score=111.68 Aligned_cols=164 Identities=15% Similarity=0.164 Sum_probs=111.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hccc---CCCcccccHHHHHHHHH----HH
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDFK---YDDFSSLDLSLLSKNIS----DI 580 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~~---~d~p~t~D~~ll~~~L~----~L 580 (818)
++||++|++||||||+++.+. .+|+++|+.|...+.-- . ..+. .-.-+.+|.+.|-+.+. ..
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 799999999999999999998 68999999998876510 0 1111 11235667776666442 11
Q ss_pred hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (818)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (818)
..-..+.+|..-+....... ........++++|-.++|+..+.+.+-.+|.+.+|.++.++|.+.||...+.. .
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~---~~~l~G~r~ivlDiPLLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~lse~d---A 154 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEIL---KLLLRGYRVIVLDIPLLFEAKLLKICHKTVVVTCDEELQLERLVERDELSEED---A 154 (225)
T ss_pred HHHHhcccHHHHHHHHHHHH---HHHhcCCeEEEEechHHHHHhHHhheeeEEEEEECcHHHHHHHHHhccccHHH---H
Confidence 22234666665554322110 01234578999999999988888889999999999999999999998322111 1
Q ss_pred hhHHHhhcchhhhhccccCCcccEEEeCCCCCc
Q 003460 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPV 693 (818)
Q Consensus 661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~ 693 (818)
........|..++ .+.||+||+|+-++.
T Consensus 155 e~Rl~sQmp~~~k-----~~~a~~Vi~Nng~~~ 182 (225)
T KOG3220|consen 155 ENRLQSQMPLEKK-----CELADVVIDNNGSLE 182 (225)
T ss_pred HHHHHhcCCHHHH-----HHhhheeecCCCChH
Confidence 2344455555544 478999999987664
No 106
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.00 E-value=4.4e-10 Score=129.54 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=90.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----hcccCCCcccccHHHHHHHHHHHh-----cCCce
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIR-----NGRRT 586 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----~~~~~d~p~t~D~~ll~~~L~~L~-----~g~~v 586 (818)
++.+|+|+||+||||||+|+.|++.||..+++.|++|+.... ...+++++.++ ..+.+.+.... .+..+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~~~~i 360 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL--AELLSDLKIELKPSSGSPQRV 360 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHH--HHHHhcCCeeeccCCCCCceE
Confidence 567999999999999999999999999999999999997321 22344444432 33333333222 23468
Q ss_pred ecccccccccccCCCcce-----e--------------eecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHH
Q 003460 587 KVPIFDLETGARSGFKEL-----E--------------VSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRV 647 (818)
Q Consensus 587 ~~P~yD~~~~~r~~~~~~-----~--------------~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri 647 (818)
.+|.||.+.+-|...-.. . ......-+|+||--.+.--+ +..|++||++++.+.+..||.
T Consensus 361 ~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtvV~-P~AdlKIfL~As~evRa~RR~ 439 (512)
T PRK13477 361 WINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTHVF-PDAELKIFLTASVEERARRRA 439 (512)
T ss_pred EeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeEEc-CCCCEEEEEECCHHHHHHHHH
Confidence 889999887655421000 0 00112248999987765222 336999999999999999987
Q ss_pred hcC
Q 003460 648 QRD 650 (818)
Q Consensus 648 ~Rd 650 (818)
.+.
T Consensus 440 ~~l 442 (512)
T PRK13477 440 LDL 442 (512)
T ss_pred hhh
Confidence 663
No 107
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.97 E-value=1.1e-09 Score=102.61 Aligned_cols=104 Identities=27% Similarity=0.362 Sum_probs=65.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEecccee--cccccCCCCCc----ccHHHHHHHHHhhhcCCccccccchhhhh
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYR--VGVDEGNDLDS----IDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~--~~~~~~~~~~~----~d~~~l~~~L~~l~~~~~i~~p~~d~~~~ 137 (818)
+|+|+|+|||||||+|+.|++.+|+.++++|+++ .++........ .+.+.+...+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN-------------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE--------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc--------------
Confidence 6999999999999999999999999999999942 23332221111 111122222222111
Q ss_pred ccccccccccCCccEEEEEecccchhh-hhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 138 NRIGSKVIKGASSGVVIVDGTYALDAR-LRSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~~-l~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
......+|+||.+..... .....|..||++++.+.+..|+++|.
T Consensus 67 ---------~~~~~~~ii~g~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~ 111 (121)
T PF13207_consen 67 ---------KPDNDNWIIDGSYESEMEIRLPEFDHVIYLDAPDEECRERRLKRR 111 (121)
T ss_dssp ---------TTT--EEEEECCSCHCCHSCCHHGGCEEEEEEEEHHHHHHHHHHH
T ss_pred ---------cCCCCeEEEeCCCccchhhhhhcCCEEEEEECCCHHHHHHHHHHH
Confidence 234568999997662212 22345788999999886666666664
No 108
>PRK08118 topology modulation protein; Reviewed
Probab=98.97 E-value=3.3e-09 Score=106.00 Aligned_cols=100 Identities=16% Similarity=0.181 Sum_probs=69.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (818)
|..|.|.|++||||||+|+.|++.+|+++++.|.++.... +... ..+.+.+.+..+.
T Consensus 1 m~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~-w~~~---~~~~~~~~~~~~~------------------- 57 (167)
T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN-WEGV---PKEEQITVQNELV------------------- 57 (167)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC-CcCC---CHHHHHHHHHHHh-------------------
Confidence 3469999999999999999999999999999999764211 1000 1111111111111
Q ss_pred ccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 142 SKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
. ..-+|+||.+.-. +.....+|..|||++|.+.++.|.+.|..
T Consensus 58 ----~---~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 58 ----K---EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred ----c---CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH
Confidence 0 1238999988743 33446799999999999999999988853
No 109
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.96 E-value=1.1e-09 Score=123.92 Aligned_cols=159 Identities=15% Similarity=0.169 Sum_probs=99.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch----hh-----h-hcc---cCCCcccccHHHHHHHHHH----H
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----EQ-----V-KDF---KYDDFSSLDLSLLSKNISD----I 580 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~----~~-----~-~~~---~~d~p~t~D~~ll~~~L~~----L 580 (818)
.+|||+|++||||||+++.|++ +|+.++++|...+. .. . ..+ ..+..+++|...|.+.+.. +
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~ 80 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEAR 80 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 4699999999999999999998 89999999988765 11 0 111 1223478888888876532 2
Q ss_pred hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (818)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (818)
+.-+.+.+|..-...... ........++++|..+++...+...+|..|||++|.+.++.|.+.|+ |.+.+.
T Consensus 81 ~~le~i~hP~I~~~i~~~-----i~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rR----g~s~~~ 151 (395)
T PRK03333 81 AVLNGIVHPLVGARRAEL-----IAAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQR----GMAEAD 151 (395)
T ss_pred HHHHHhhhHHHHHHHHHH-----HHhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcC----CCCHHH
Confidence 222334455432211111 11112224555555555667788899999999999999999987753 433322
Q ss_pred -hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (818)
Q Consensus 661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (818)
...+....+ .++....||++|+|+-+
T Consensus 152 a~~ri~~Q~~-----~e~k~~~AD~vIdN~~s 178 (395)
T PRK03333 152 ARARIAAQAS-----DEQRRAVADVWLDNSGT 178 (395)
T ss_pred HHHHHHhcCC-----hHHHHHhCCEEEECCCC
Confidence 111221122 12336789999998754
No 110
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.95 E-value=3e-09 Score=128.04 Aligned_cols=188 Identities=12% Similarity=0.083 Sum_probs=115.5
Q ss_pred hhHHHHHHHHHHHHh-cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc---ccCCCCCcccHHHHHHHHH
Q 003460 44 GYYLLVKSIQELREK-KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV---DEGNDLDSIDFDALVQNLQ 119 (818)
Q Consensus 44 ~~~~l~~~i~~~~~~-~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~---~~~~~~~~~d~~~l~~~L~ 119 (818)
.|....+.+..+... .....+|+|+||+||||||+|+.|++.||..++++|.+|+.. ......+..|.+.+.+.+.
T Consensus 423 syP~F~~~l~~Lg~~~~~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (661)
T PRK11860 423 TFPDYFEALFSVAQADADRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALAR 502 (661)
T ss_pred CCCChHHHHHHhcCCcccCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHh
Confidence 333344444444332 233568999999999999999999999999999999999954 1222233335555555444
Q ss_pred hhhc----------CCcccc-----------------ccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEE
Q 003460 120 DLTE----------GKDTLI-----------------PMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIR 172 (818)
Q Consensus 120 ~l~~----------~~~i~~-----------------p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~ 172 (818)
.+.. ++++.. |.++........ ......-+|+||--+.. .+.+.+|++
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~qr----~~~~~~~~v~eGRdigt-vv~p~a~~k 577 (661)
T PRK11860 503 GLPVRFEGDRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAALLALQR----SFRRLPGLVADGRDMGT-VIFPDAALK 577 (661)
T ss_pred cCCeeecCCeEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHHH----HHhhCCCEEEECCCCcc-EECCCCCeE
Confidence 3211 111111 111111111100 01112248999987654 344668999
Q ss_pred EEEEcCHHHHHHHHHHhccCCC--cCHHHHHH----hhchhhhhccCCccccCcEEEECCCCCChhhhhh
Q 003460 173 VAVVGGVHFSLISKVQYDIGDS--CSLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIY 236 (818)
Q Consensus 173 I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~~~~~~~~~~~ 236 (818)
||++|+.++|.+||........ .+.+++.+ +-.....+.+.|.+...|.++.++-.+++++-+-
T Consensus 578 ifl~a~~~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~ 647 (661)
T PRK11860 578 VFLTASAEARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVA 647 (661)
T ss_pred EEEECChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHH
Confidence 9999999999999987543222 35555444 4456777788899888887776665666666543
No 111
>PRK06762 hypothetical protein; Provisional
Probab=98.93 E-value=1.2e-08 Score=101.45 Aligned_cols=134 Identities=18% Similarity=0.139 Sum_probs=80.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh--CCeEEeccceecccc-cCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVGVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L--g~~vI~~D~~~~~~~-~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (818)
+.+|+|+|++||||||+|+.|++.+ ++.+++.|.+++.+. ..+.++....+.+.+.....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~----------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYG----------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHH-----------------
Confidence 4789999999999999999999998 577889998876432 12233333333222211110
Q ss_pred cccccccccCCccEEEEEecccch------hhhhcCC---CEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhh
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALD------ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~------~~l~~~~---D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~ 209 (818)
......+|+|+.+.-. ..+.... ...||+++|.+++++|...|......+ ++.++.++...+
T Consensus 65 --------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~-~~~l~~~~~~~~ 135 (166)
T PRK06762 65 --------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFG-EDDMRRWWNPHD 135 (166)
T ss_pred --------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCC-HHHHHHHHhhcC
Confidence 1123468888886422 2233222 378999999999999999887533233 333333322222
Q ss_pred hccCCccccCcEEEECC
Q 003460 210 KHIEPDLHHAQIRINNR 226 (818)
Q Consensus 210 ~~Iep~~~~ADiII~N~ 226 (818)
. + ..++.+|+++
T Consensus 136 ~---~--~~~~~~~~~~ 147 (166)
T PRK06762 136 T---L--GVIGETIFTD 147 (166)
T ss_pred C---c--CCCCeEEecC
Confidence 1 1 2356677655
No 112
>cd07756 CYTH-like_Pase_CHAD Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosp
Probab=98.93 E-value=3.6e-09 Score=108.32 Aligned_cols=126 Identities=13% Similarity=0.069 Sum_probs=96.7
Q ss_pred cccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec----c---------HHH
Q 003460 256 NEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----M---------TLG 322 (818)
Q Consensus 256 ~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~---------~~~ 322 (818)
...+.++|||+|+++++..+.++ |||+.+++..+|+|++....+++ +.|.|+|+.| . +..
T Consensus 32 ~~~l~~~YfDTpd~~L~~~~~aL-----RiR~~~~~~~~TlK~~~~~~~g~--~~R~E~e~~l~~~~~~l~~~~~~~~~~ 104 (197)
T cd07756 32 TRRLHNTYFDTPDLALRRAGIAL-----RVRREGGQWVQTLKTAGSVVGGL--HQRPEWEVPLPGPAPDLDLASILPDGE 104 (197)
T ss_pred eeeeeeeeeeCcChHHHhCCCEE-----EEEeeCCeEEEEEeeCCcCCCCc--ccceeEcccCCCCCcCcchhhcCCccc
Confidence 45688999999999999999999 99999999999999886444554 7999999999 1 556
Q ss_pred HHHhcC----CceeEEEEEEEEEEEeCC----EEEEEec--cC--CCCCCeEEEEec----CHHHHHHHH----HHcCCC
Q 003460 323 GLLDLG----YSVVASYKRASTYVVYGN----LSVSFET--ID--TLDETFMVLRGT----NRKTVGAEA----LRMGIN 382 (818)
Q Consensus 323 ~L~~LG----f~~~~~~~K~R~~~~~~~----~~i~lD~--v~--~lg~~fvEiE~~----~~~~i~~~~----~~Lgl~ 382 (818)
++.+++ +.|++++++.|+.|.+.. ++|++|. |. +--.|.-|||.. +...+.++| ...|+.
T Consensus 105 ~~~~l~~~~~L~pvf~t~~~R~~~~l~~~~~~iEvalD~G~i~a~~~~~~i~EiElELk~G~~~~L~~la~~l~~~~~l~ 184 (197)
T cd07756 105 LLEALAALAALVPLFTTDFERTVWLLRLGGSEIEVALDQGEIRAGDRSEPICEIELELKSGDPAALFALARRLAERLPLR 184 (197)
T ss_pred CHhhhhccCCceEEEEEEEEEEEEEEcCCCcEEEEEEeeeEEEeCCCccceEeEEEEecCCCHHHHHHHHHHHHHhCCcc
Confidence 778884 999999999999999844 9999999 43 222357677655 445554444 445665
Q ss_pred CCccch
Q 003460 383 GPWITK 388 (818)
Q Consensus 383 ~~~~~~ 388 (818)
.....|
T Consensus 185 ~~~~SK 190 (197)
T cd07756 185 LSNRSK 190 (197)
T ss_pred CCCcCH
Confidence 544443
No 113
>PRK07261 topology modulation protein; Provisional
Probab=98.91 E-value=6.5e-09 Score=104.24 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=71.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (818)
.|+|.|++||||||+|+.|++.+|.++++.|.++.... + ...+.+.+.+.+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-~---~~~~~~~~~~~~~~~~--------------------- 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-W---QERDDDDMIADISNFL--------------------- 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-c---ccCCHHHHHHHHHHHH---------------------
Confidence 58999999999999999999999999999999764211 1 1112222333222111
Q ss_pred ccccCCccEEEEEecccch--hhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 003460 144 VIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (818)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~ 192 (818)
.... +|+||.+.-. +.....+|.+||++.|...++.|.++|...
T Consensus 57 ----~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 57 ----LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred ----hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 1122 8999998752 444467999999999999999999999754
No 114
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.90 E-value=4.8e-09 Score=109.88 Aligned_cols=172 Identities=15% Similarity=0.160 Sum_probs=95.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccccc---CCCCCcccHHHHHHHHHhhhcC-------Ccccccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE---GNDLDSIDFDALVQNLQDLTEG-------KDTLIPM 131 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~---~~~~~~~d~~~l~~~L~~l~~~-------~~i~~p~ 131 (818)
+.+|+|+|++||||||+|+.|++.+|+.++++|.+|+.... ....+..+.+.+.+.+..+... ..+.+..
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVALAAHLDISFESDPGGQRVFLNG 83 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCCCCCHHHHHHHHhcCCeEEecCCCcceEEECC
Confidence 47899999999999999999999999999999999885321 1122222333343332221110 0011000
Q ss_pred -----------chhh-----hhccccccc----cccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 132 -----------FDYQ-----QKNRIGSKV----IKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 132 -----------~d~~-----~~~~~~~~~----~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
++.. ..+.+.... .......-+|++|...... +.+..+++|||++|.+.+..|+..+..
T Consensus 84 ~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~~-vl~~a~~~ifl~a~~e~R~~Rr~~~~~ 162 (225)
T PRK00023 84 EDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGTV-VFPDAELKIFLTASAEERAERRYKELQ 162 (225)
T ss_pred cchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChheE-EeCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 0000 000000000 0011223588999864432 334489999999999999888877643
Q ss_pred CC--CcCHHHHHHh----hchhhhhccCCccccCc-EEEECCCCCChhhhh
Q 003460 192 GD--SCSLDSLIDS----IFPLFRKHIEPDLHHAQ-IRINNRFVSSFREAI 235 (818)
Q Consensus 192 ~~--~~s~e~~~~~----~~p~~~~~Iep~~~~AD-iII~N~~~~~~~~~~ 235 (818)
.. ..+.+++.+. -.....+++.|.+..+| ++|+++ ..++++..
T Consensus 163 ~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs-~l~~ee~v 212 (225)
T PRK00023 163 AKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTS-GLSIEEVV 212 (225)
T ss_pred hcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECC-CCCHHHHH
Confidence 32 1344443332 22233455677777777 555555 45554443
No 115
>PRK08118 topology modulation protein; Reviewed
Probab=98.89 E-value=4.5e-09 Score=104.99 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=73.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
-|.|.|++||||||+|+.|++.++.+++++|+.++.. +|.... -+...+.+..+.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~-----~w~~~~---~~~~~~~~~~~~~---------------- 58 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP-----NWEGVP---KEEQITVQNELVK---------------- 58 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc-----CCcCCC---HHHHHHHHHHHhc----------------
Confidence 4788999999999999999999999999999988631 121111 1122222222111
Q ss_pred CCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCc
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 656 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~ 656 (818)
.+-+|+||.+... +...+..|..||+++|.+.++.|.+.|....+|.
T Consensus 59 -----------~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~ 106 (167)
T PRK08118 59 -----------EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGK 106 (167)
T ss_pred -----------CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCC
Confidence 1237899988743 4445679999999999999999999997765554
No 116
>PRK07261 topology modulation protein; Provisional
Probab=98.88 E-value=5.3e-09 Score=104.89 Aligned_cols=105 Identities=24% Similarity=0.255 Sum_probs=77.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
.|+|.|++||||||||+.|+..++..++++|++++... +. ..+.+.+.+.+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~-----~~---~~~~~~~~~~~~~~~----------------- 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN-----WQ---ERDDDDMIADISNFL----------------- 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc-----cc---cCCHHHHHHHHHHHH-----------------
Confidence 47899999999999999999999999999999876321 21 122333333333311
Q ss_pred CCCcceeeecCCcEEEEEecccc-h-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCccc
Q 003460 599 SGFKELEVSEDCGVIIFEGVYAL-H-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~-~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~ 658 (818)
.... +|+||.|.- . +...+.+|..||++.|...++.|.+.|+...+|...
T Consensus 57 ---------~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r 108 (171)
T PRK07261 57 ---------LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTR 108 (171)
T ss_pred ---------hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcC
Confidence 1123 899999975 2 555567999999999999999999999987777653
No 117
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.87 E-value=1.4e-08 Score=123.32 Aligned_cols=173 Identities=16% Similarity=0.149 Sum_probs=108.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-----cCCCCC--cccHHHHHHHHHhhhcCCcccc------
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDLD--SIDFDALVQNLQDLTEGKDTLI------ 129 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-----~~~~~~--~~d~~~l~~~L~~l~~~~~i~~------ 129 (818)
.+|+|+|++||||||+|+.||+.||+.+++++.+|+... .....+ ..|.+.+...+..+..+..+.+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVTEAVGEFFTGLHFDISVDPDS 81 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcchhhhhhhhhHHHHHHHHhCCcEEEecCCCC
Confidence 589999999999999999999999999999999998532 111121 2233444444443322111110
Q ss_pred -----------------------------ccchhhhhccccccccccCC-------ccEEEEEecccchhhhhcCCCEEE
Q 003460 130 -----------------------------PMFDYQQKNRIGSKVIKGAS-------SGVVIVDGTYALDARLRSLLDIRV 173 (818)
Q Consensus 130 -----------------------------p~~d~~~~~~~~~~~~~~~~-------~~vVIvEG~~l~~~~l~~~~D~~I 173 (818)
|.+......... ....... ..-+|+||--+.. .+.+.+|++|
T Consensus 82 ~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~qr-~~~~~~~~~~~~~~~~~~v~eGRdigt-vv~p~a~~K~ 159 (712)
T PRK09518 82 PGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQR-AYIAREASADSFSGGLGIVAEGRDITT-VVAPDAEVRI 159 (712)
T ss_pred cEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHHH-HHHhhcCccccccccCcEEEecCccce-EEecCCCeEE
Confidence 000000000000 0000111 1259999987765 3346689999
Q ss_pred EEEcCHHHHHHHHHHhccCCCcCHHHHHH----hhchhhhhccCCccccCcEEEECCCCCChhhhhhcccC
Q 003460 174 AVVGGVHFSLISKVQYDIGDSCSLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240 (818)
Q Consensus 174 ~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~~~~~~~~~~~~l~~ 240 (818)
|++|+.++|.+||..+... .+.+++.+ +-.... +.+.|.....|.++.++..+++++-+-.+..
T Consensus 160 ~l~A~~~~Ra~Rr~~~~~~--~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~~ 227 (712)
T PRK09518 160 LLTAREEVRQARRSGQDRS--ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLIG 227 (712)
T ss_pred EEECCHHHHHHHHHHhhhc--CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence 9999999999999998754 44444443 445556 7788988888877766667777766544444
No 118
>cd07891 CYTH-like_CthTTM-like_1 CYTH-like Clostridium thermocellum TTM-like subgroup 1. This subgroup contains the triphosphate tunnel metalloenzyme (TTM) from Clostridium thermocellum (CthTTM) and similar proteins. These are found primarily in bacteria. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. These enzymes are members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily, which have a unique active site located within an eight-stranded beta barrel.
Probab=98.86 E-value=9.7e-09 Score=100.34 Aligned_cols=85 Identities=15% Similarity=0.110 Sum_probs=69.9
Q ss_pred chhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec---cHHHHHHhcCCceeEEEEEEEEEEEeCCEEE
Q 003460 273 ATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVYGNLSV 349 (818)
Q Consensus 273 ~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~~~~~K~R~~~~~~~~~i 349 (818)
..++++ |||..++++.||||||+. + ++|.|+|+.| ...+++. +.....++|.|..|.+++..+
T Consensus 32 ~~~~~l-----RiR~~~~~~~lT~K~~~~---~---~~R~E~E~~i~~~~~~~l~~---~~~~~~I~K~R~~~~~~~~~~ 97 (148)
T cd07891 32 DPERTV-----RVRIAGDRAYLTIKGPTN---G---LSRYEFEYEIPLADAEELLA---LCEGPVIEKTRYRVPHGGHTW 97 (148)
T ss_pred CCCcEE-----EEEEeCCEEEEEEEeCCC---C---ceEEEEEEeCCHHHHHHHHh---cCCCCeEEEEEEEEEeCCEEE
Confidence 344567 999999999999998864 2 5899999999 3333443 677899999999999999999
Q ss_pred EEeccCCCCCC--eEEEEecCHHH
Q 003460 350 SFETIDTLDET--FMVLRGTNRKT 371 (818)
Q Consensus 350 ~lD~v~~lg~~--fvEiE~~~~~~ 371 (818)
+||.++|+|.+ |+|||..+++.
T Consensus 98 ~lD~~~g~~~gL~~~EiE~~~e~~ 121 (148)
T cd07891 98 EVDVFHGENAGLVVAEIELPSEDE 121 (148)
T ss_pred EEEEEcCCCCceEEEEEEcCCccc
Confidence 99999999875 99999986543
No 119
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.83 E-value=1e-08 Score=101.94 Aligned_cols=114 Identities=22% Similarity=0.287 Sum_probs=69.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~ 597 (818)
.+|+|+|++||||||+|+.|++.+|..+++.|++++.... ..+. +...+.... .. .|.++.....
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~-~~g~------~~~~~~~~~---~~-----~~~~~~~~~~ 65 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAA-KMGL------DLIEFLNYA---EE-----NPEIDKKIDR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHH-HcCC------CHHHHHHHH---hc-----CcHHHHHHHH
Confidence 3799999999999999999999999999999988764211 1111 111100000 00 0000000000
Q ss_pred cCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCc
Q 003460 598 RSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 598 r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
+. .......+.+|+||.+..+ .+.+..|+.|||++|.+++..|...|+.
T Consensus 66 ~i----~~~~~~~~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 66 RI----HEIALKEKNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred HH----HHHHhcCCCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHHccC
Confidence 00 0001112457779988654 1245678999999999999999998863
No 120
>PRK08356 hypothetical protein; Provisional
Probab=98.82 E-value=2.4e-08 Score=102.20 Aligned_cols=152 Identities=16% Similarity=0.149 Sum_probs=83.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-CCCcc----cHH------HHHHHH--HhhhcCCcc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-DLDSI----DFD------ALVQNL--QDLTEGKDT 127 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-~~~~~----d~~------~l~~~L--~~l~~~~~i 127 (818)
..++|+|+|++||||||+|+.|++ +|..+|++++..+...... ....| .+. .+.+.- ..-..|.++
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 346899999999999999999975 8999999998654211111 11111 111 111100 000001111
Q ss_pred ccccchhhhhccccccccccCCccEEEEEecccch--hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC---cCHHHHHH
Q 003460 128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---CSLDSLID 202 (818)
Q Consensus 128 ~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~---~s~e~~~~ 202 (818)
.. ...... . .....++++|.-... ..+.......|||+++.+.+..|...|+...+ .+.+++.+
T Consensus 83 ~~----~~~~~~-----~--~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~ 151 (195)
T PRK08356 83 LI----RLAVDK-----K--RNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLK 151 (195)
T ss_pred HH----HHHHHH-----h--ccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHH
Confidence 00 000000 1 112258999995544 23445457899999999999888888875433 14444432
Q ss_pred hh---chhhhhccCCccccCcEEEECC
Q 003460 203 SI---FPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 203 ~~---~p~~~~~Iep~~~~ADiII~N~ 226 (818)
.. ...|.. .-..+.||++|.|+
T Consensus 152 ~~~~~~~l~~~--~~~~~~aD~vI~N~ 176 (195)
T PRK08356 152 FDEWEEKLYHT--TKLKDKADFVIVNE 176 (195)
T ss_pred HHHHHHHhhhh--hhHHHhCcEEEECC
Confidence 21 121111 22347899999985
No 121
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.78 E-value=2.2e-08 Score=99.57 Aligned_cols=101 Identities=24% Similarity=0.338 Sum_probs=77.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh--------CCeEEeccceeccccc----------------CCCCCcccHHHHHHH
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI--------GCTLISMENYRVGVDE----------------GNDLDSIDFDALVQN 117 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L--------g~~vI~~D~~~~~~~~----------------~~~~~~~d~~~l~~~ 117 (818)
|++||++||.||||||++-+|-..+ .+..+|.||||...++ ++-++++|+..+.+.
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ev 110 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLVEV 110 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccHHHHHHH
Confidence 8999999999999999999886644 2567999999885332 355789999999999
Q ss_pred HHhhhcCC----ccccccchhhh----hcccc-ccccccCCccEEEEEecccch
Q 003460 118 LQDLTEGK----DTLIPMFDYQQ----KNRIG-SKVIKGASSGVVIVDGTYALD 162 (818)
Q Consensus 118 L~~l~~~~----~i~~p~~d~~~----~~~~~-~~~~~~~~~~vVIvEG~~l~~ 162 (818)
|+.+..+. .+.+|.|++.. ++|.. .+.....+..++|+||+++..
T Consensus 111 Lna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF 164 (282)
T KOG2878|consen 111 LNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGF 164 (282)
T ss_pred HHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccc
Confidence 88876543 47889999864 34432 233344467899999999865
No 122
>cd07374 CYTH-like_Pase CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases. CYTH-like superfamily enzymes hydrolyze triphosphate-containing substrates and require metal cations as cofactors. They have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB), and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions.
Probab=98.77 E-value=2.3e-08 Score=100.38 Aligned_cols=101 Identities=8% Similarity=-0.023 Sum_probs=79.2
Q ss_pred cccccccceeeccCCCCCcchhhhccCCeeeEeee--CCEEEEEEcceeecCCCcccCceeEEEEec----cHH------
Q 003460 254 QGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTL------ 321 (818)
Q Consensus 254 ~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~--~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~------ 321 (818)
.....+.|+|||+|++. ..+.++ |||.. ++++.+|+|++.-. +.|.|+|+.| .+.
T Consensus 29 ~~~~~~~~~YfDT~d~~--l~~~~l-----rlR~r~~~~~~~~TlK~~~~~------~~r~E~e~~l~~~~~~~~~~~~~ 95 (174)
T cd07374 29 PETVQLRAIYFDTPDLR--LARAGL-----RLRRRTGGADAGWHLKLPGGI------SRRTEVRAPLGDAAAVAPLLLAA 95 (174)
T ss_pred ccceeeeeeEecCccch--hhhCCc-----EEEEEcCCCccEEEEEccCCC------CCceEEEeecCCccCCcccccch
Confidence 34567899999999983 334555 66644 55889999976532 5789999999 222
Q ss_pred ----HHHHhcCCceeEEEEEEEEEEEeC-----CEEEEEeccCC-------CCCCeEEEEecC
Q 003460 322 ----GGLLDLGYSVVASYKRASTYVVYG-----NLSVSFETIDT-------LDETFMVLRGTN 368 (818)
Q Consensus 322 ----~~L~~LGf~~~~~~~K~R~~~~~~-----~~~i~lD~v~~-------lg~~fvEiE~~~ 368 (818)
.++..+||.|++++.+.|+.|.++ .++|+||.++. .++ ++|+|.++
T Consensus 96 ~~~~~~~~~~~l~p~~~~~~~R~~~~l~~~~~~~iei~lD~~~~~~~~~~~~~~-e~E~El~~ 157 (174)
T cd07374 96 ALVLAVTRGLPLRPVATIETTRTVYRLLDAGGVLAELDLDTVTARVLDGGGTQY-WREVEVEL 157 (174)
T ss_pred hheeeecCCCCceEEEEEEEEEEEEEecCCCceEEEEEecEEEEEEcCCCcceE-EEEEEEEE
Confidence 356779999999999999999987 49999999986 677 99999983
No 123
>PRK01184 hypothetical protein; Provisional
Probab=98.77 E-value=2e-08 Score=101.60 Aligned_cols=155 Identities=21% Similarity=0.212 Sum_probs=84.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhc--CCceecccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRN--GRRTKVPIFDLET 595 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~--g~~v~~P~yD~~~ 595 (818)
.+|+|+|++||||||+++ +++.+|+.++++||..+..-.. .+..... +.+.+....++. +..+ +...+
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~-~~~~~~~----~~~g~~~~~~~~~~~~~~----~~~~~ 71 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKK-RGLEPTD----ENIGKVAIDLRKELGMDA----VAKRT 71 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHH-cCCCCCc----HHHHHHHHHHHHHHChHH----HHHHH
Confidence 589999999999999987 6778999999999887753211 1111111 111111111111 0000 00001
Q ss_pred cccCCCcceeeecCCcEEEEEecccch--HhhhhcCC---EEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcch
Q 003460 596 GARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLD---LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPM 670 (818)
Q Consensus 596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~--~~l~~~~D---~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~ 670 (818)
+... . ..+..++|++|+.... ..+++.++ ..|+++++.+.++.|...|+....+.+.+ ++.......
T Consensus 72 ~~~i-----~-~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~--~~~~r~~~q 143 (184)
T PRK01184 72 VPKI-----R-EKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWE--ELEERDERE 143 (184)
T ss_pred HHHH-----H-hcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHH--HHHHHHHHH
Confidence 1111 0 0234789999985432 34555555 89999999999999998886322122221 111111100
Q ss_pred hhhhccccCCcccEEEeCCC
Q 003460 671 FQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 671 ~~~~I~p~~~~ADivI~n~~ 690 (818)
...=+.+....||++|+|+-
T Consensus 144 ~~~~~~~~~~~ad~vI~N~~ 163 (184)
T PRK01184 144 LSWGIGEVIALADYMIVNDS 163 (184)
T ss_pred hccCHHHHHHhcCEEEeCCC
Confidence 00001223367999999864
No 124
>PRK13949 shikimate kinase; Provisional
Probab=98.76 E-value=2.4e-08 Score=99.96 Aligned_cols=142 Identities=18% Similarity=0.107 Sum_probs=77.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCC---CcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL---DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~---~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (818)
..|.|.|++||||||+++.|++.+|+.++++|.+........-. .....+.+.+.-.. .
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~------------------~ 63 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERN------------------M 63 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHH------------------H
Confidence 46999999999999999999999999999999875421111000 00111111111000 0
Q ss_pred ccccccccCCccEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-----cCHHHHHHhhchhhhh
Q 003460 140 IGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-----CSLDSLIDSIFPLFRK 210 (818)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-----~s~e~~~~~~~p~~~~ 210 (818)
. .. +. .....||..|.+... ..+....+++|||+++.+..++|...+. ..+ .+.+++.+.+...|.+
T Consensus 64 l-~~-l~-~~~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~-~~RP~~~~~~~~~~~~~i~~l~~~ 139 (169)
T PRK13949 64 L-HE-VA-EFEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAK-QQRPLLKGKSDEELLDFIIEALEK 139 (169)
T ss_pred H-HH-HH-hCCCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCC-CCCCCCCCCChHHHHHHHHHHHHH
Confidence 0 00 11 112356667665543 2334457999999999999766654221 112 2223333222233333
Q ss_pred ccCCccccCcEEEECCC
Q 003460 211 HIEPDLHHAQIRINNRF 227 (818)
Q Consensus 211 ~Iep~~~~ADiII~N~~ 227 (818)
+...+.+ ||++|+.+.
T Consensus 140 R~~~Y~~-ad~~id~~~ 155 (169)
T PRK13949 140 RAPFYRQ-AKIIFNADK 155 (169)
T ss_pred HHHHHHh-CCEEEECCC
Confidence 3332333 899998763
No 125
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.74 E-value=1.1e-08 Score=101.80 Aligned_cols=40 Identities=20% Similarity=0.249 Sum_probs=36.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (818)
+.+..|.|+|++||||||+|+.|++.+|..+++.|.+...
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~ 41 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEA 41 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 4567899999999999999999999999999999997653
No 126
>PLN02200 adenylate kinase family protein
Probab=98.73 E-value=4.3e-08 Score=103.30 Aligned_cols=121 Identities=12% Similarity=0.074 Sum_probs=73.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (818)
+.+++|.|+|++||||||+|+.|++.+|+.+|+++++.+.......+ +...+... +..|..+.-..........
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~---~~~~i~~~---~~~G~~vp~e~~~~~l~~~ 114 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSE---HGAMILNT---IKEGKIVPSEVTVKLIQKE 114 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccCh---hHHHHHHH---HHcCCCCcHHHHHHHHHHH
Confidence 34689999999999999999999999999999999886532211111 11122222 2233321111111111111
Q ss_pred ccccccccCCccEEEEEecccch-------hhhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 140 IGSKVIKGASSGVVIVDGTYALD-------ARLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~-------~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
. ......-+|+||..--. ..+....|.+||++++.++.+.|...|..
T Consensus 115 l-----~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 115 M-----ESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred H-----hcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC
Confidence 1 11123458999964322 11223578999999999999999888853
No 127
>PRK04182 cytidylate kinase; Provisional
Probab=98.72 E-value=2.9e-08 Score=99.48 Aligned_cols=112 Identities=28% Similarity=0.352 Sum_probs=67.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
+|+|+|++||||||+|+.|++.+|..++++|++++..... .+. +...+.+. ++ ..|.++......
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~-~g~------~~~~~~~~------~~--~~~~~~~~~~~~ 66 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKE-RGM------SLEEFNKY------AE--EDPEIDKEIDRR 66 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHH-cCC------CHHHHHHH------hh--cCchHHHHHHHH
Confidence 7999999999999999999999999999999887752211 111 11111110 00 011111111100
Q ss_pred CCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
. .........+|++|.+..+ .+.+..++.||+++|.+.++.|...|+
T Consensus 67 ~----~~~~~~~~~~Vi~g~~~~~-~~~~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 67 Q----LEIAEKEDNVVLEGRLAGW-MAKDYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred H----HHHHhcCCCEEEEEeecce-EecCCCCEEEEEECCHHHHHHHHHhcc
Confidence 0 0011012346778876543 112337899999999999999988875
No 128
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.72 E-value=1.9e-08 Score=105.44 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=74.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcC-----Cceecccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNG-----RRTKVPIF 591 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g-----~~v~~P~y 591 (818)
+.+|+|+|++||||||+|+.|++.+|..+++.|++|+.........+-+ -.|.+.+.+.+..+... ....+...
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVD-LEDEEALVALAAHLDISFESDPGGQRVFLN 82 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHHHHHHHHHcCCC-CCCHHHHHHHHhcCCeEEecCCCcceEEEC
Confidence 5789999999999999999999999999999999998732211111111 11233333322221100 00000000
Q ss_pred cccccc-------------cCCCcce--------eeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460 592 DLETGA-------------RSGFKEL--------EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 592 D~~~~~-------------r~~~~~~--------~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
+..... ....... .......-+|+||.+....-+.+ .+++||++++.+.|..|+..+.
T Consensus 83 ~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~~vl~~-a~~~ifl~a~~e~R~~Rr~~~~ 161 (225)
T PRK00023 83 GEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGTVVFPD-AELKIFLTASAEERAERRYKEL 161 (225)
T ss_pred CcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChheEEeCC-CCEEEEEECCHHHHHHHHHHHH
Confidence 000000 0000000 00012245899999855433333 7899999999999988877664
No 129
>PRK03839 putative kinase; Provisional
Probab=98.69 E-value=1.2e-07 Score=95.61 Aligned_cols=97 Identities=21% Similarity=0.296 Sum_probs=63.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC---CCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG---NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~---~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (818)
.|.|+|++||||||+|+.|++.+|..++++|++++...-. .......+..+...+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------- 61 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEE-------------------- 61 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHH--------------------
Confidence 5899999999999999999999999999999986532100 00001111111111110
Q ss_pred cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 141 GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
. . ....+|++|.+... ...|++||++++.+....|...|.
T Consensus 62 ---~--~-~~~~vIidG~~~~l----~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 62 ---E--F-KEKNVVLDGHLSHL----LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred ---h--c-cCCCEEEEeccccc----cCCCEEEEEECCHHHHHHHHHHcC
Confidence 0 0 11237888865421 247999999999999988877664
No 130
>PRK00625 shikimate kinase; Provisional
Probab=98.69 E-value=6.4e-08 Score=97.21 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=79.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (818)
.|.|+|.+||||||+++.|++.+|.+++++|.+...........+ ...+.+. .|+. .|........ .
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~--i~eif~~-----~Ge~----~fr~~E~~~l-~- 68 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSS--PKEIYQA-----YGEE----GFCREEFLAL-T- 68 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCC--HHHHHHH-----HCHH----HHHHHHHHHH-H-
Confidence 489999999999999999999999999999997543222110000 0000000 0100 0000000000 0
Q ss_pred ccccCCccEEEEEe-cccchhhhh---cCCCEEEEEEcCHHHHHHHHHHhccCCC----cCHHHHHHhhchhhhhccCCc
Q 003460 144 VIKGASSGVVIVDG-TYALDARLR---SLLDIRVAVVGGVHFSLISKVQYDIGDS----CSLDSLIDSIFPLFRKHIEPD 215 (818)
Q Consensus 144 ~~~~~~~~vVIvEG-~~l~~~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~~~~----~s~e~~~~~~~p~~~~~Iep~ 215 (818)
.+. . ...||..| .....+... .....+||++++.+....|...|..... ...++++++..|.|++
T Consensus 69 ~l~-~-~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~----- 141 (173)
T PRK00625 69 SLP-V-IPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRS----- 141 (173)
T ss_pred Hhc-c-CCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHH-----
Confidence 011 1 22344444 333333222 2336899999999999888887765432 2233444555666654
Q ss_pred cccCcEEEECC
Q 003460 216 LHHAQIRINNR 226 (818)
Q Consensus 216 ~~~ADiII~N~ 226 (818)
.||++|+.+
T Consensus 142 --~ad~~i~~~ 150 (173)
T PRK00625 142 --IADYIFSLD 150 (173)
T ss_pred --HCCEEEeCC
Confidence 799998766
No 131
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.68 E-value=5e-08 Score=97.98 Aligned_cols=137 Identities=17% Similarity=0.132 Sum_probs=76.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccccCCCC--CcccHHHHHHHHHhhhcCCccccccc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDL--DSIDFDALVQNLQDLTEGKDTLIPMF 132 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~~--~~~d~~~l~~~L~~l~~~~~i~~p~~ 132 (818)
.++.+|.++|++||||||+|+.|++.++ +.+++.|.++..+...+.. ...+.......+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~------------ 72 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAK------------ 72 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHH------------
Confidence 4567999999999999999999999885 6778888876543222100 00000000001110
Q ss_pred hhhhhccccccccccCCccEEEEEecccch---hhhhcC--CCEEEEEEcCHHHHHHHHHHh--ccCCCcCHHHHHHhhc
Q 003460 133 DYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSL--LDIRVAVVGGVHFSLISKVQY--DIGDSCSLDSLIDSIF 205 (818)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~--~D~~I~Vda~~e~~l~Rri~R--d~~~~~s~e~~~~~~~ 205 (818)
.+ .....+||++|...+. ...+.. -.+.||++++.++..+|...+ ....+..+.++...+.
T Consensus 73 -----------~l-~~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~ 140 (176)
T PRK05541 73 -----------FL-ADQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDI 140 (176)
T ss_pred -----------HH-HhCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCC
Confidence 01 1223477888876552 111111 147899999999887775321 0000112222333334
Q ss_pred hhhhhccCCccccCcEEEECCC
Q 003460 206 PLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 206 p~~~~~Iep~~~~ADiII~N~~ 227 (818)
|.|.. .||++|+|+.
T Consensus 141 ~~~~~-------~Ad~vI~~~~ 155 (176)
T PRK05541 141 PFDEP-------KADLVIDNSC 155 (176)
T ss_pred cccCC-------CCCEEEeCCC
Confidence 44443 4899999984
No 132
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.65 E-value=4.1e-08 Score=102.23 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=75.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh--cccCCCcccccHHHHHHHHHHHh------cC-----
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYDDFSSLDLSLLSKNISDIR------NG----- 583 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~--~~~~d~p~t~D~~ll~~~L~~L~------~g----- 583 (818)
+++|+|+||+||||||+++.|+..++..+++.|++|+.-... ..+.+. .|-..+.+.+..+. .|
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDL---TSEDALAELISHLDIRFIPTNGEVEVF 78 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCC---CCHHHHHHHHHhCCCEEecCCCceeEE
Confidence 468999999999999999999999999999999999753211 111111 12222222222110 00
Q ss_pred --------------------CceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHH
Q 003460 584 --------------------RRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHL 643 (818)
Q Consensus 584 --------------------~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl 643 (818)
....+|.+......+. ......+-+|+||.+.++..+ +..+++||++++.+.|.
T Consensus 79 l~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~q-----r~~a~~~~~Vi~Gr~~~~~v~-~~a~~~ifl~a~~~~Ra 152 (217)
T TIGR00017 79 LNGEDVSEAIRTQEVANAASKVAVFPKVREALLKRQ-----QALAKNDGIIADGRDIGTVVF-PNAEVKIFLDASVEERA 152 (217)
T ss_pred EcCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHH-----HHHhhcCCEEEEEcCcceEEe-CCCCEEEEEECCHHHHH
Confidence 0011122111111111 000112349999998665433 33789999999999999
Q ss_pred HHHHhcCcc
Q 003460 644 ISRVQRDKS 652 (818)
Q Consensus 644 ~Rri~Rd~~ 652 (818)
.|+..|...
T Consensus 153 ~Rr~~~~~~ 161 (217)
T TIGR00017 153 KRRYKQLQI 161 (217)
T ss_pred HHHHHHHhc
Confidence 999888643
No 133
>cd07761 CYTH-like_CthTTM-like Clostridium thermocellum (Cth)TTM and similar proteins, a subgroup of the CYTH-like superfamily. CthTTM is a metal dependent tripolyphosphatase, nucleoside triphosphatase, and nucleoside tetraphosphatase. It hydrolyzes the beta-gamma phosphoanhydride linkage of triphosphate-containing substrates including tripolyphosphate, nucleoside triphosphates and nucleoside tetraphosphates. These substrates are hydrolyzed, releasing Pi. Mg++ or Mn++ are required for the enzyme's activity. CthTTM appears to have no adenylate cyclase activity. This subgroup consists chiefly of bacterial sequences. Members of the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily have a unique active site located within an eight-stranded beta barrel.
Probab=98.64 E-value=9.9e-08 Score=93.14 Aligned_cols=81 Identities=11% Similarity=0.130 Sum_probs=68.3
Q ss_pred hhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec---cHHHHHHhcCCceeEEEEEEEEEEEe-CCEEEE
Q 003460 275 EEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVVASYKRASTYVVY-GNLSVS 350 (818)
Q Consensus 275 dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~~~~~K~R~~~~~-~~~~i~ 350 (818)
++++ |||..++++.|||||+. + +.|.|+|..| .+.++|. +.....++|.|..|.+ ++..++
T Consensus 32 ~~~v-----RvR~~~~~~~lT~K~~~----~---~~R~E~E~~I~~~~~~~ll~---~~~~~~I~K~R~~~~~~~~~~~~ 96 (146)
T cd07761 32 NPEV-----RIRSKGEKYILTVKSGG----G---LVREEIEIEIDKKEFEHLLE---KTEGNLIEKTRYLIPLEGGLLAE 96 (146)
T ss_pred CcEE-----EEEEECCEEEEEEEcCC----C---cceEEEEEeCCHHHHHHHHH---hCCCCeEEEEEEEEEeCCCcEEE
Confidence 4677 99999999999999874 5 6999999999 5556664 7788899999999999 999999
Q ss_pred EeccCCCCC--CeEEEEecCHH
Q 003460 351 FETIDTLDE--TFMVLRGTNRK 370 (818)
Q Consensus 351 lD~v~~lg~--~fvEiE~~~~~ 370 (818)
||.++|.+. .|+|||..+++
T Consensus 97 vD~~~g~~~gL~~~EvE~~se~ 118 (146)
T cd07761 97 LDVFEGRLTGLVYAEVEFPSEE 118 (146)
T ss_pred EEEEcCCCCCeEEEEEEcCCch
Confidence 999999872 28888887543
No 134
>PRK06762 hypothetical protein; Provisional
Probab=98.63 E-value=1.5e-07 Score=93.55 Aligned_cols=106 Identities=22% Similarity=0.256 Sum_probs=70.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh--CCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l--g~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~ 594 (818)
|.+|+|+|++||||||+|+.|++.+ ++.+++.|.+.... ...++.++....+.+.+.....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l---~~~~~~~~~~~~~~~~~~~~~~-------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM---LRVKDGPGNLSIDLIEQLVRYG-------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh---ccccCCCCCcCHHHHHHHHHHH--------------
Confidence 6789999999999999999999998 46678888776431 1112344444454444332221
Q ss_pred ccccCCCcceeeecCCcEEEEEecccch------HhhhhcCC---EEEEEEcChhHHHHHHHhcCc
Q 003460 595 TGARSGFKELEVSEDCGVIIFEGVYALH------PEIRKSLD---LWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~------~~l~~~~D---~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
.....++|+||.+.-. ..+....+ ..||+++|.++++.|...|..
T Consensus 65 ------------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~ 118 (166)
T PRK06762 65 ------------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK 118 (166)
T ss_pred ------------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence 1123577888886421 23333333 789999999999999988863
No 135
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.63 E-value=1.6e-07 Score=92.74 Aligned_cols=168 Identities=19% Similarity=0.334 Sum_probs=121.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccch--hh-------h----hcccCCCcccccHHHHHHHHH
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS--EQ-------V----KDFKYDDFSSLDLSLLSKNIS 578 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~--~~-------~----~~~~~d~p~t~D~~ll~~~L~ 578 (818)
-.||+|+|.||+|-||.+......+. +..+..|.|++- .+ . ....+-.|.+-|+..|.+.+.
T Consensus 5 hPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~ 84 (289)
T COG3954 5 HPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFI 84 (289)
T ss_pred CceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHHH
Confidence 34799999999999999998887764 557788999764 11 0 123345789999999999988
Q ss_pred HHhcCCceecccc----c------ccccccCCCccee-eecCCcEEEEEecccch----HhhhhcCCEEEEEEcChhHHH
Q 003460 579 DIRNGRRTKVPIF----D------LETGARSGFKELE-VSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHL 643 (818)
Q Consensus 579 ~L~~g~~v~~P~y----D------~~~~~r~~~~~~~-~~~~~~vvIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl 643 (818)
..-+...-....| | ...|.-. .|+ ..++.|++..||++.+. -.+.+.+|+.|-+..-.....
T Consensus 85 eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFT---pW~~lpe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEW 161 (289)
T COG3954 85 EYGQSGKGRSRKYLHTYDEAVPWNQVPGTFT---PWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEW 161 (289)
T ss_pred HhcccCCcchhhhhhchhhcCccCCCCCCCC---CcccCCCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHH
Confidence 7654222222222 2 2223333 343 24568999999999874 457889999998888788888
Q ss_pred HHHHhcCccccCcccch-hhHHHhhcchhhhhccccCCcccEEEe
Q 003460 644 ISRVQRDKSRMGCFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIR 687 (818)
Q Consensus 644 ~Rri~Rd~~~rg~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~ 687 (818)
...+.||-.+||++.+. .+-.-...+.|..||-|+-.+.|+-+.
T Consensus 162 IQK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThINFQ 206 (289)
T COG3954 162 IQKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINFQ 206 (289)
T ss_pred HHHHHhcccccCccHHHHHHHHHHhhhhHHhhcCcccccccccee
Confidence 89999999999999875 233334567899999999888887543
No 136
>PRK04040 adenylate kinase; Provisional
Probab=98.61 E-value=1.9e-07 Score=95.18 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=82.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh--CCeEEeccceeccccc-CCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVGVDE-GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L--g~~vI~~D~~~~~~~~-~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (818)
+.+|+|+|++||||||+++.|++.+ +..+++.++++..... .+... +.+.+.+ +..... ..+......
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~--~~d~~r~----l~~~~~---~~~~~~a~~ 72 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVE--HRDEMRK----LPPEEQ---KELQREAAE 72 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCC--CHHHHhh----CChhhh---HHHHHHHHH
Confidence 5789999999999999999999999 8999999998653221 11111 1121111 100000 000000001
Q ss_pred cccccccccCCccEEEEEecccch-----------hhhhc-CCCEEEEEEcCHHHHHHHHHH---hccCCCcCHHHHHHh
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALD-----------ARLRS-LLDIRVAVVGGVHFSLISKVQ---YDIGDSCSLDSLIDS 203 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~-----------~~l~~-~~D~~I~Vda~~e~~l~Rri~---Rd~~~~~s~e~~~~~ 203 (818)
. .........+|+||.+.+. ..+.+ ..|..|++.++++..++||.. |+... .+.+.+..+
T Consensus 73 ~----i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~-es~e~I~~~ 147 (188)
T PRK04040 73 R----IAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDV-ETEEDIEEH 147 (188)
T ss_pred H----HHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCC-CCHHHHHHH
Confidence 1 1111234458889876432 11122 358999999999988888774 22111 233332222
Q ss_pred h--chhhhhccCCccccCcEEEECCC
Q 003460 204 I--FPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 204 ~--~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
+ ...+..++.......+.+|.|+.
T Consensus 148 ~~~a~~~a~~~a~~~g~~~~iI~N~d 173 (188)
T PRK04040 148 QEMNRAAAMAYAVLTGATVKIVENRE 173 (188)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 1 12222223333455788888874
No 137
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.59 E-value=3.6e-07 Score=91.72 Aligned_cols=141 Identities=16% Similarity=0.222 Sum_probs=77.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (818)
+..|.|.|++||||||+++.|++.+|..++++|.........+ ...+.+. .|.. .|...... .-
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~------i~~~~~~-----~g~~----~fr~~e~~-~l 67 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGAD------IGWVFDV-----EGEE----GFRDREEK-VI 67 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcC------HhHHHHH-----hCHH----HHHHHHHH-HH
Confidence 4569999999999999999999999999999998543222111 0000000 0000 00000000 00
Q ss_pred ccccccCCccEEEEEecccc-hh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCCC---cC----HHHHHHhhchhhhh
Q 003460 142 SKVIKGASSGVVIVDGTYAL-DA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---CS----LDSLIDSIFPLFRK 210 (818)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~-~~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~---~s----~e~~~~~~~p~~~~ 210 (818)
... .. ...+++.-|.... .+ .+....+.+|||+++.+.++.|...+....- .. .+.+.+...|.|++
T Consensus 68 ~~l-~~-~~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~ 145 (172)
T PRK05057 68 NEL-TE-KQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEE 145 (172)
T ss_pred HHH-Hh-CCCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 000 11 1224444443332 22 2334468999999999999888754432211 12 22333445666654
Q ss_pred ccCCccccCcEEEECCC
Q 003460 211 HIEPDLHHAQIRINNRF 227 (818)
Q Consensus 211 ~Iep~~~~ADiII~N~~ 227 (818)
.||++|+++.
T Consensus 146 -------~Ad~~idt~~ 155 (172)
T PRK05057 146 -------IADVTIRTDD 155 (172)
T ss_pred -------hCCEEEECCC
Confidence 6999998773
No 138
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.58 E-value=2.6e-07 Score=93.12 Aligned_cols=117 Identities=16% Similarity=0.104 Sum_probs=69.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (818)
+|.|.|++||||||+|+.|++.+|+.+|+++++.+.......+ .. ..+.+. +..|..+.-..........
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~--~~-~~~~~~---~~~g~~~~~~~~~~ll~~~---- 70 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSE--NG-ELIESM---IKNGKIVPSEVTVKLLKNA---- 70 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCCh--HH-HHHHHH---HHCCCcCCHHHHHHHHHHH----
Confidence 5899999999999999999999999999998875532221111 00 111111 1122221110111111111
Q ss_pred ccccCCccEEEEEecccch---h---hhh---cCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 144 VIKGASSGVVIVDGTYALD---A---RLR---SLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~---~---~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
+.......+|+||..--. . .+. ...|..||+++|.+..++|...|..
T Consensus 71 -~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 71 -IQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred -HhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 111114568999974322 1 111 2468999999999999999998875
No 139
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.56 E-value=1.6e-07 Score=91.68 Aligned_cols=137 Identities=19% Similarity=0.224 Sum_probs=75.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccc
Q 003460 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (818)
Q Consensus 65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~ 144 (818)
|.|+|++||||||+|+.|++.+|+..++.|.+........ ...+.+.. +.+ .+...... ... .
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~------~~~~~~~~-----~~~----~~~~~e~~-~~~-~ 64 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMS------IPEIFAEE-----GEE----GFRELERE-VLL-L 64 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCC------HHHHHHHH-----CHH----HHHHHHHH-HHH-H
Confidence 7899999999999999999999999999999865433221 11111000 000 00000000 000 0
Q ss_pred cccCCccEEEEEecc-cchh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCCC---cC---HHHHHHhhchhhhhccCC
Q 003460 145 IKGASSGVVIVDGTY-ALDA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGDS---CS---LDSLIDSIFPLFRKHIEP 214 (818)
Q Consensus 145 ~~~~~~~vVIvEG~~-l~~~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~---~s---~e~~~~~~~p~~~~~Iep 214 (818)
.. .....||..|.. .... ........+|||++|.+.+.+|...|+.... .+ ......+..+.|.
T Consensus 65 ~~-~~~~~vi~~g~~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~----- 138 (154)
T cd00464 65 LL-TKENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYR----- 138 (154)
T ss_pred Hh-ccCCcEEECCCCccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHH-----
Confidence 11 112344444432 2222 1123356899999999998888877652211 11 2233333344444
Q ss_pred ccccCcEEEECC
Q 003460 215 DLHHAQIRINNR 226 (818)
Q Consensus 215 ~~~~ADiII~N~ 226 (818)
+.||++++.+
T Consensus 139 --~~ad~~i~~~ 148 (154)
T cd00464 139 --EVADLTIDTD 148 (154)
T ss_pred --HhCcEEEECC
Confidence 4699999877
No 140
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.54 E-value=1.2e-07 Score=94.30 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=34.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
.+..|.++|++||||||+|+.|++.+|..+++.|++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~ 40 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIE 40 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHH
Confidence 45689999999999999999999999999999998865
No 141
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.53 E-value=5.1e-07 Score=91.83 Aligned_cols=157 Identities=10% Similarity=0.036 Sum_probs=79.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc----cCCCCCcccHHHHHHHHHhhhcCCccccccchh-
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY- 134 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~- 134 (818)
.++++|.|+||||||||||++.|.+...-...+...--+... ++.+.--...+.+.+. +..+.-+.+-.|..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~---i~~~~f~e~~~~~g~ 78 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKG---IADGEFLEWAEVHDN 78 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHH---HHcCCeEEEEEECCe
Confidence 357899999999999999999998764211111111101000 1111111122222222 22333333222221
Q ss_pred --hhhccccccccccCCccEEEEEecccchhhhhcCC-C--EEEEEEcC-HHHHHHHHHHhccCCCcCHHHHHHhhchhh
Q 003460 135 --QQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL-D--IRVAVVGG-VHFSLISKVQYDIGDSCSLDSLIDSIFPLF 208 (818)
Q Consensus 135 --~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D--~~I~Vda~-~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~ 208 (818)
.+....... ......++|++.-.-....++..+ + +.|||.+| .+....|...|+......++..++.+.+..
T Consensus 79 ~YGt~~~~i~~--~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~ 156 (186)
T PRK14737 79 YYGTPKAFIED--AFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIEL 156 (186)
T ss_pred eecCcHHHHHH--HHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 111111111 123455777774433333344333 3 68999986 566677777776433344555555544443
Q ss_pred hhccCCccccCcEEEECC
Q 003460 209 RKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 209 ~~~Iep~~~~ADiII~N~ 226 (818)
+. .+.+|.||.|+
T Consensus 157 ~~-----~~~~D~vI~N~ 169 (186)
T PRK14737 157 DE-----ANEFDYKIIND 169 (186)
T ss_pred hh-----hccCCEEEECc
Confidence 33 57899999998
No 142
>PRK08356 hypothetical protein; Provisional
Probab=98.52 E-value=4.2e-07 Score=93.06 Aligned_cols=123 Identities=19% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh---hhhcccCCCccc----ccHHHHHHHHHHHh--cCCce
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE---QVKDFKYDDFSS----LDLSLLSKNISDIR--NGRRT 586 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~---~~~~~~~d~p~t----~D~~ll~~~L~~L~--~g~~v 586 (818)
+..+|+|+||+||||||+|+.|++ +|+.++|+.+.++.. +..++.|..... .+...+.+.=.-+. -|..+
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~ 82 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDI 82 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHH
Confidence 346799999999999999999975 899999999876541 111121111000 00011111000000 01110
Q ss_pred ecccccccccccCCCcceeeecCCcEEEEEecccch--HhhhhcCCEEEEEEcChhHHHHHHHhcCc
Q 003460 587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 587 ~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~--~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
.+ ...-++ . .....++++|+-... ..+.......||++++.+.+..|...|+.
T Consensus 83 ~~----~~~~~~-----~---~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 83 LI----RLAVDK-----K---RNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred HH----HHHHHH-----h---ccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCC
Confidence 00 000000 0 112358999995543 23444446899999999998888877763
No 143
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.52 E-value=8.6e-07 Score=86.48 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=33.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (818)
+|.|+|++||||||+|+.|++.+|+.+++.|.++..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence 478999999999999999999999999999998763
No 144
>PRK14528 adenylate kinase; Provisional
Probab=98.50 E-value=5.3e-07 Score=91.72 Aligned_cols=140 Identities=15% Similarity=0.082 Sum_probs=78.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRI 140 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~ 140 (818)
|..|.|.|++||||||+|+.|++.+|++++++|+..+.....+.+ +-..+.. +..|..+.-.........+.
T Consensus 1 ~~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~-------~g~~~~~~~~~g~lvp~~~~~~~~~~~l 73 (186)
T PRK14528 1 MKNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTA-------MGIEAKRYMDAGDLVPDSVVIGIIKDRI 73 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCH-------HHHHHHHHHhCCCccCHHHHHHHHHHHH
Confidence 356899999999999999999999999999999986542222111 1111122 12222111111111111111
Q ss_pred cccccccCCccEEEEEecccch-------hhh---hcCCCEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHhhchhh
Q 003460 141 GSKVIKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLF 208 (818)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~-------~~l---~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~~~p~~ 208 (818)
. .......+|+||.---. ..+ ....|.+|++++|.+..+.|...|..... .+-++.+.+.+..|
T Consensus 74 ~----~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y 149 (186)
T PRK14528 74 R----EADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNEATIKNRLDNY 149 (186)
T ss_pred h----CcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHH
Confidence 1 11123468999963211 111 13589999999999999999988854332 22233344333444
Q ss_pred hhcc
Q 003460 209 RKHI 212 (818)
Q Consensus 209 ~~~I 212 (818)
....
T Consensus 150 ~~~~ 153 (186)
T PRK14528 150 NKKT 153 (186)
T ss_pred HHHh
Confidence 4433
No 145
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.50 E-value=1.1e-06 Score=88.74 Aligned_cols=119 Identities=16% Similarity=0.117 Sum_probs=70.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNRI 140 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~-~~~~i~~p~~d~~~~~~~ 140 (818)
..+|+|.|++||||||+|+.|++.+|..+++++++.+.......+ . .+.+..+. .+. ..|. .......
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~----~---~~~~~~~~~~~~--~~~~--~~~~~~l 71 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSE----R---GKQLQAIMESGD--LVPL--DTVLDLL 71 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCH----H---HHHHHHHHHCCC--CCCH--HHHHHHH
Confidence 468999999999999999999999999999999875532111111 1 11122111 121 1111 0000001
Q ss_pred ccccc-ccCCccEEEEEecccch---hhh---hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 141 GSKVI-KGASSGVVIVDGTYALD---ARL---RSLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 141 ~~~~~-~~~~~~vVIvEG~~l~~---~~l---~~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
..... .......+|+||..--. ..+ ....|+.||++++.+....|...|..
T Consensus 72 ~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 72 KDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred HHHHHcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 00000 12234578999974221 111 13478999999999999999888864
No 146
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.50 E-value=3e-07 Score=112.23 Aligned_cols=175 Identities=15% Similarity=0.140 Sum_probs=103.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-----cCCCC------CcccHHHHH-----HHHHhhhc---
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDL------DSIDFDALV-----QNLQDLTE--- 123 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-----~~~~~------~~~d~~~l~-----~~L~~l~~--- 123 (818)
++|+|+||+||||||+|+.||+.||+.+|+++.+|+.+. ..-.+ +..|.+.+. ..+..+..
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDTSYA 114 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHcCCcccccccCCcCCHHHHhhhhhHHHHhhCceEec
Confidence 689999999999999999999999999999999999532 11100 122333332 22221110
Q ss_pred -----------------------------------CCcccc----ccchhhhhc-----ccccc----ccccCCccEEEE
Q 003460 124 -----------------------------------GKDTLI----PMFDYQQKN-----RIGSK----VIKGASSGVVIV 155 (818)
Q Consensus 124 -----------------------------------~~~i~~----p~~d~~~~~-----~~~~~----~~~~~~~~vVIv 155 (818)
+.++.. |..+..... .+... ........-+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dv~~~ir~~~v~~~vS~ia~~p~VR~~l~~~qr~~~~~~~~V~ 194 (863)
T PRK12269 115 PLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCGARVVC 194 (863)
T ss_pred ccccccccccccccccccccccccccccCceEEECCeEchhhhcchHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 000000 000000000 00000 000011224888
Q ss_pred EecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH----hhchhhhhccCCccccCcEEEECCCCCCh
Q 003460 156 DGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID----SIFPLFRKHIEPDLHHAQIRINNRFVSSF 231 (818)
Q Consensus 156 EG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~----~~~p~~~~~Iep~~~~ADiII~N~~~~~~ 231 (818)
||-=+.. .+.+.+|++||++|+.+.|.+||...... ..+.+++.+ +-.....+-+.|.+...|.++.++..+++
T Consensus 195 eGRDigT-vVfPdA~~KifL~As~e~RA~RR~~e~~~-~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~l~i 272 (863)
T PRK12269 195 EGRDLTT-VVFVDADLKCYLDASIEARVARRWAQGTS-RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSCLTI 272 (863)
T ss_pred ECCCCcc-EECCCCCEEEEEECCHHHHHHHHHHhhhc-cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCCCCH
Confidence 9875543 44577899999999999999999765432 245555444 33455556678999998987766667777
Q ss_pred hhhhhccc
Q 003460 232 REAIYKLK 239 (818)
Q Consensus 232 ~~~~~~l~ 239 (818)
++-+-.+.
T Consensus 273 eevv~~i~ 280 (863)
T PRK12269 273 EEVCERIA 280 (863)
T ss_pred HHHHHHHH
Confidence 66554443
No 147
>PRK04040 adenylate kinase; Provisional
Probab=98.50 E-value=1.8e-07 Score=95.24 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=35.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh--CCcccccccccch
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKS 554 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l--g~~vis~Ddfy~~ 554 (818)
|.+|+|+|++||||||+++.|++.+ +..+++.|+++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~ 41 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLE 41 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHH
Confidence 6789999999999999999999999 7899999999865
No 148
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.50 E-value=4.2e-07 Score=92.31 Aligned_cols=117 Identities=21% Similarity=0.087 Sum_probs=69.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccccc
Q 003460 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKV 144 (818)
Q Consensus 65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~ 144 (818)
|.|.|++||||||+|+.|++.+|+.++++|++.+.......+ ....+...+. .+..+.-...........
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~---~~~~~~~~~~---~g~~~~~~~~~~l~~~~l---- 71 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTE---LGKKAKEYID---SGKLVPDEIVIKLLKERL---- 71 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCCh---HHHHHHHHHH---cCCccCHHHHHHHHHHHH----
Confidence 789999999999999999999999999999986533221110 1111111111 122111111111111111
Q ss_pred cccCCccEEEEEecccch------hhhhc---CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 145 IKGASSGVVIVDGTYALD------ARLRS---LLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 145 ~~~~~~~vVIvEG~~l~~------~~l~~---~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
.......-+|++|...-. ..... ..++.|+++++.++.++|...|..
T Consensus 72 ~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 72 KKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred hcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 011123457889853321 12222 678999999999999999998874
No 149
>PRK14527 adenylate kinase; Provisional
Probab=98.49 E-value=6e-07 Score=91.55 Aligned_cols=142 Identities=18% Similarity=0.105 Sum_probs=80.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~ 138 (818)
+.+.+|.|.|++||||||+|+.|++.+|+.++++|+..+.....+.+ +...+..+ ..+..+...........
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~l~~~ 76 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTE-------LGQRAKPIMEAGDLVPDELILALIRD 76 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcH-------HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 35678999999999999999999999999999999986543221111 11111111 11221110001111111
Q ss_pred cccccccccCCccEEEEEecccchh---hh-------hcCCCEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHhhch
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALDA---RL-------RSLLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFP 206 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~---~l-------~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~~~p 206 (818)
.. .......+|+||..--.. .+ ...++..+|++++.+.++.|...|..... .+-++.+.+.+.
T Consensus 77 ~l-----~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~ 151 (191)
T PRK14527 77 EL-----AGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQ 151 (191)
T ss_pred HH-----hcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHH
Confidence 11 111123489999643211 11 13467889999999999999998864322 223344444445
Q ss_pred hhhhccC
Q 003460 207 LFRKHIE 213 (818)
Q Consensus 207 ~~~~~Ie 213 (818)
.|.+...
T Consensus 152 ~y~~~~~ 158 (191)
T PRK14527 152 VYREQTQ 158 (191)
T ss_pred HHHHHhH
Confidence 5554443
No 150
>PRK03839 putative kinase; Provisional
Probab=98.48 E-value=5.3e-07 Score=90.90 Aligned_cols=100 Identities=21% Similarity=0.282 Sum_probs=66.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
.|.|+|++||||||+++.|++.++..++++|+++....... .++..+...+..+...+....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~----------------- 63 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGE-EKDDEMEIDFDKLAYFIEEEF----------------- 63 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcc-cCChhhhcCHHHHHHHHHHhc-----------------
Confidence 47889999999999999999999999999999986432111 112222223333333322200
Q ss_pred CCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
. ...+|++|.+... ...|..||++++.+....|...|.
T Consensus 64 ---------~-~~~vIidG~~~~l----~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 64 ---------K-EKNVVLDGHLSHL----LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred ---------c-CCCEEEEeccccc----cCCCEEEEEECCHHHHHHHHHHcC
Confidence 0 1226778865322 136889999999999988877664
No 151
>PRK13946 shikimate kinase; Provisional
Probab=98.47 E-value=3.7e-07 Score=92.64 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=64.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (818)
.+..|+++|++||||||+++.|++.||++++++|......... ....+.... +.. .+.... ...
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~------~~~e~~~~~-----ge~----~~~~~e-~~~ 72 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARM------TIAEIFAAY-----GEP----EFRDLE-RRV 72 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCC------CHHHHHHHH-----CHH----HHHHHH-HHH
Confidence 3457999999999999999999999999999999854322211 001111100 000 000000 000
Q ss_pred cccccccCCccEEEEEecccc-hhh---hhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 141 GSKVIKGASSGVVIVDGTYAL-DAR---LRSLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~-~~~---l~~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
-.... .....||..|...+ .+. +....++.||+++|.+.+++|...|..
T Consensus 73 l~~l~--~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~ 125 (184)
T PRK13946 73 IARLL--KGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDT 125 (184)
T ss_pred HHHHH--hcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCC
Confidence 00111 11235666554332 222 112357899999999999988876653
No 152
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.47 E-value=1.6e-07 Score=90.43 Aligned_cols=114 Identities=22% Similarity=0.238 Sum_probs=66.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (818)
+|.++|++||||||+|+.|++.++..+|+.|.++..+...+.+...+.......+.... .... ..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-~~ 65 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQIL--------------NAAI-RK 65 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHH--------------HHHH-HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHH--------------HHHH-HH
Confidence 58899999999999999999999999999999877655433322211111111111000 0000 00
Q ss_pred ccccCCccEEEEEecccchh---hh---hcCC---CEEEEEEcCHHHHHHHHHHhccCCC
Q 003460 144 VIKGASSGVVIVDGTYALDA---RL---RSLL---DIRVAVVGGVHFSLISKVQYDIGDS 194 (818)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~~---~l---~~~~---D~~I~Vda~~e~~l~Rri~Rd~~~~ 194 (818)
... . ..-+|++..+.... .+ .... -..|+++++.++..+|...|.....
T Consensus 66 ~l~-~-g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~ 123 (143)
T PF13671_consen 66 ALR-N-GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGD 123 (143)
T ss_dssp HHH-T-T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCT
T ss_pred HHH-c-CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCccc
Confidence 011 1 12366676655441 11 1111 2668999999999999888876543
No 153
>PLN02200 adenylate kinase family protein
Probab=98.47 E-value=5.6e-07 Score=94.88 Aligned_cols=121 Identities=15% Similarity=0.170 Sum_probs=74.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~ 594 (818)
+.|.+|.|.|++||||||+|+.|++.+|+.+||++|..+.+-.. + +.+.. .....+..|+.+.-......
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~----~---s~~~~---~i~~~~~~G~~vp~e~~~~~ 110 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIAS----N---SEHGA---MILNTIKEGKIVPSEVTVKL 110 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhc----c---ChhHH---HHHHHHHcCCCCcHHHHHHH
Confidence 46889999999999999999999999999999999998753211 1 11111 12222334443221110000
Q ss_pred ccccCCCcceeeecCCcEEEEEecccchH---hhh----hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460 595 TGARSGFKELEVSEDCGVIIFEGVYALHP---EIR----KSLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~----~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
...+. .. ....-+|+||...... .+. ...|..|+++++.++.+.|...|..
T Consensus 111 l~~~l-----~~-~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~ 168 (234)
T PLN02200 111 IQKEM-----ES-SDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQ 168 (234)
T ss_pred HHHHH-----hc-CCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcC
Confidence 00111 00 0123489999653321 121 2478999999999999999888853
No 154
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.46 E-value=2e-07 Score=92.43 Aligned_cols=138 Identities=18% Similarity=0.197 Sum_probs=81.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccH---HHHHHHHHhhhcCCccccccchhhhhcc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDF---DALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~---~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (818)
..|.+.|++||||||+++.||+.||...+|+|..........-++-|+. +.+.+. . ..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~------------------E-~~ 63 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRL------------------E-TE 63 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHH------------------H-HH
Confidence 4588999999999999999999999999999997553222211111110 111100 0 00
Q ss_pred ccccccccCCccEEEEEecccch-hhhhcCC---CEEEEEEcCHHHHHHHHHHhccCCC----cC----HHHHHHhhchh
Q 003460 140 IGSKVIKGASSGVVIVDGTYALD-ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDS----CS----LDSLIDSIFPL 207 (818)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~---D~~I~Vda~~e~~l~Rri~Rd~~~~----~s----~e~~~~~~~p~ 207 (818)
+...... .. ..||.-|-.++. ++.+.++ -.+||++++.+...+|.- ++.... .+ ++++++...|.
T Consensus 64 vl~~l~~-~~-~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~-~~~~RPll~~~~~~~~l~~L~~~R~~~ 140 (172)
T COG0703 64 VLKELLE-ED-NAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQ-RDRKRPLLQTEDPREELEELLEERQPL 140 (172)
T ss_pred HHHHHhh-cC-CeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhc-cccCCCcccCCChHHHHHHHHHHHHHH
Confidence 0001111 11 255555555543 3333332 389999999999777665 332111 22 34555666788
Q ss_pred hhhccCCccccCcEEEECCCCC
Q 003460 208 FRKHIEPDLHHAQIRINNRFVS 229 (818)
Q Consensus 208 ~~~~Iep~~~~ADiII~N~~~~ 229 (818)
|++ .||++++.+..+
T Consensus 141 Y~e-------~a~~~~~~~~~~ 155 (172)
T COG0703 141 YRE-------VADFIIDTDDRS 155 (172)
T ss_pred HHH-------hCcEEecCCCCc
Confidence 776 699999887543
No 155
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.46 E-value=3.4e-07 Score=93.13 Aligned_cols=134 Identities=17% Similarity=0.214 Sum_probs=78.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhc--CC--ceeccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRN--GR--RTKVPIFD 592 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~--g~--~v~~P~yD 592 (818)
.++|+|.||+||||||+|+.|+..||..+++..-+|+.-...... ...+-.|.+.+.+.+..+.- .. .+.+---|
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~-~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~ged 82 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALK-HGVDLDDEDALVALAKELDISFVNDDRVFLNGED 82 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHH-cCCCCccHHHHHHHHHhCCceecccceEEECCch
Confidence 389999999999999999999999999999999999873322111 11122344555544443210 00 01110001
Q ss_pred cc-------ccccC------CC------c-ceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCcc
Q 003460 593 LE-------TGARS------GF------K-ELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 652 (818)
Q Consensus 593 ~~-------~~~r~------~~------~-~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~ 652 (818)
-+ .+... +. . ........+=+|+||-=.+. .+.+-.+++||++++.+.|-+||.+....
T Consensus 83 vs~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT-vV~PdA~lKiFLtAS~e~RA~RR~~q~~~ 161 (222)
T COG0283 83 VSEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT-VVFPDAELKIFLTASPEERAERRYKQLQA 161 (222)
T ss_pred hhhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc-eECCCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 10 00000 00 0 00001112448889876654 23345689999999999999999876533
No 156
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.45 E-value=1e-06 Score=86.71 Aligned_cols=98 Identities=23% Similarity=0.296 Sum_probs=72.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec------ccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV------GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~------~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~ 136 (818)
++|+|+|.+|+||||+|+.|+ .+|..++++-++.+ +.++....-..|.+.+...+..+..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~~------------- 66 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELLR------------- 66 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHhc-------------
Confidence 369999999999999999999 79999999988744 2333323345677777666554321
Q ss_pred hccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
....|+|+.+. .+.+.+|++|.+.++++.-..|...|.
T Consensus 67 -------------~~~~Ivd~H~~---hl~~~~dlVvVLR~~p~~L~~RLk~RG 104 (180)
T COG1936 67 -------------EGSGIVDSHLS---HLLPDCDLVVVLRADPEVLYERLKGRG 104 (180)
T ss_pred -------------cCCeEeechhh---hcCCCCCEEEEEcCCHHHHHHHHHHcC
Confidence 12367888765 344578999999999999888877776
No 157
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.43 E-value=1.4e-06 Score=88.44 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=64.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCC--CCcccHHHHHHHHHhhhcCCcc---ccccchhhhh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND--LDSIDFDALVQNLQDLTEGKDT---LIPMFDYQQK 137 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~--~~~~d~~~l~~~L~~l~~~~~i---~~p~~d~~~~ 137 (818)
.+|+|.||+|||||||++.|+..++..++..|........... .-.+..+.+.+.+. .+.-. ......+.+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~yg~~ 79 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAG---QNLFALSWHANGLYYGVG 79 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHH---CCchhhHHHHhCCccCCc
Confidence 4789999999999999999999887777776665332111110 01112222222211 11000 0000001111
Q ss_pred ccccccccccCCccEEEEEecccchhhhhcCC---CEEEEEEcCHHHHHHHHHHhc
Q 003460 138 NRIGSKVIKGASSGVVIVDGTYALDARLRSLL---DIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~---D~~I~Vda~~e~~l~Rri~Rd 190 (818)
..+. ..+ .....||++|.......++..+ -..||+++|.+...+|...|+
T Consensus 80 ~~~~-~~l--~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~ 132 (186)
T PRK10078 80 IEID-LWL--HAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRG 132 (186)
T ss_pred HHHH-HHH--hCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC
Confidence 1111 111 1223567788866544333322 357899999999988888775
No 158
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.43 E-value=7.2e-07 Score=89.93 Aligned_cols=117 Identities=14% Similarity=0.143 Sum_probs=69.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
+|.|.|++||||||+|+.|++.+|+.++|++|..+..-.. +.+ .-..+.+. +.+|..+.--.........
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~----~~~---~~~~~~~~---~~~g~~~~~~~~~~ll~~~ 70 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKS----GSE---NGELIESM---IKNGKIVPSEVTVKLLKNA 70 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhc----CCh---HHHHHHHH---HHCCCcCCHHHHHHHHHHH
Confidence 4789999999999999999999999999999998753211 000 00011111 1233322110100000000
Q ss_pred CCCcceeeecCCcEEEEEecccch---H---hhh---hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALH---P---EIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~---~---~l~---~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
. .... ..-+|++|..--. . .+. ...|..|+++++.+..+.|...|..
T Consensus 71 ~-----~~~~-~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 71 I-----QADG-SKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred H-----hccC-CCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 0 0011 3568999974421 1 111 1467899999999999999988864
No 159
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.42 E-value=6.3e-07 Score=89.45 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=75.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCC---CcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDL---DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~---~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (818)
..|.|+|++||||||+|+.||+.+|+++++.|.+.......... +..+.+.+.+.-..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~------------------ 64 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAA------------------ 64 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHH------------------
Confidence 35888999999999999999999999999999975432211100 011111111110000
Q ss_pred ccccccccCCccEEEEEe-cccchh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCC-C-----cC----HHHHHHhhc
Q 003460 140 IGSKVIKGASSGVVIVDG-TYALDA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGD-S-----CS----LDSLIDSIF 205 (818)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG-~~l~~~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~-~-----~s----~e~~~~~~~ 205 (818)
. ... .....||.-| ..++.+ .+....+++||++++.+..+.|...|.... + .+ ..+..+...
T Consensus 65 ~--~~~--~~~~~vi~~ggg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~ 140 (171)
T PRK03731 65 L--EAV--TAPSTVIATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAERE 140 (171)
T ss_pred H--HHh--cCCCeEEECCCCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHH
Confidence 0 000 1122344433 333332 222346799999999999988887663211 1 11 223333444
Q ss_pred hhhhhccCCccccCcEEEECC
Q 003460 206 PLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 206 p~~~~~Iep~~~~ADiII~N~ 226 (818)
+.|.+ .|+++|+++
T Consensus 141 ~~y~~-------~a~~~Id~~ 154 (171)
T PRK03731 141 ALYRE-------VAHHIIDAT 154 (171)
T ss_pred HHHHH-------hCCEEEcCC
Confidence 55543 567888776
No 160
>PRK14531 adenylate kinase; Provisional
Probab=98.42 E-value=1.2e-06 Score=88.72 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=68.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhcccc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIG 141 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~ 141 (818)
..|.|.|++||||||+|+.|++.+|+.+|+++++.+.-.....+ +-+.+.. +..|..+.-...........
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~-------~~~~~~~~~~~G~~v~d~l~~~~~~~~l- 74 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSA-------LGQEAEAVMNRGELVSDALVLAIVESQL- 74 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCH-------HHHHHHHHHHcCCCCCHHHHHHHHHHHH-
Confidence 46899999999999999999999999999998876532111110 1111222 12232111000000011111
Q ss_pred ccccccCCccEEEEEecccchh---hh-------hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 142 SKVIKGASSGVVIVDGTYALDA---RL-------RSLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~~---~l-------~~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
......-+|+||...-.. .+ ...+|..+++++|.++...|...|..
T Consensus 75 ----~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r 130 (183)
T PRK14531 75 ----KALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGR 130 (183)
T ss_pred ----hhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence 011123467799855431 11 12468899999999999999887753
No 161
>PRK13947 shikimate kinase; Provisional
Probab=98.41 E-value=9.5e-07 Score=88.06 Aligned_cols=37 Identities=19% Similarity=0.314 Sum_probs=33.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (818)
..|.|+|++||||||+|+.||+.||+++++.|.+...
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~ 38 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEK 38 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhh
Confidence 3599999999999999999999999999999997553
No 162
>PRK02496 adk adenylate kinase; Provisional
Probab=98.41 E-value=7.3e-07 Score=90.24 Aligned_cols=137 Identities=15% Similarity=0.071 Sum_probs=75.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (818)
|+.|.|.|++||||||+|+.|++.+|+.++++|+..+.......+.. ...... +..|..+.-.........+.
T Consensus 1 ~~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g---~~~~~~---~~~g~~~~~~~~~~~l~~~l- 73 (184)
T PRK02496 1 MTRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLG---IKAQGY---MDKGELVPDQLVLDLVQERL- 73 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhH---HHHHHH---HHCCCccCHHHHHHHHHHHH-
Confidence 35689999999999999999999999999999987553221111100 001111 11222111000111111111
Q ss_pred ccccccCCccEEEEEeccc-------chh---hhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhh
Q 003460 142 SKVIKGASSGVVIVDGTYA-------LDA---RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (818)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l-------~~~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~ 210 (818)
.......-+|+||.-- +.. .+....|..|+++++.+....|...|... ...++++.+.+..|.+
T Consensus 74 ---~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~--dd~~~~~~~r~~~y~~ 147 (184)
T PRK02496 74 ---QQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK--DDTEEVIRRRLEVYRE 147 (184)
T ss_pred ---hCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHH
Confidence 0111223589999832 111 11234689999999999999888877432 2233444444444444
No 163
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.40 E-value=5.8e-07 Score=76.25 Aligned_cols=56 Identities=36% Similarity=0.631 Sum_probs=45.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (818)
+|+|+|++||||||+++.|++.+ ++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 48999999999999999999875 1222211
Q ss_pred cccccccCCccEEEEEecccchh----hhhcCCCEEEEEEc
Q 003460 141 GSKVIKGASSGVVIVDGTYALDA----RLRSLLDIRVAVVG 177 (818)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~~----~l~~~~D~~I~Vda 177 (818)
++|+||.+.... .+...+|++||+++
T Consensus 34 -----------~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 -----------IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred -----------EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 899999999875 57789999999997
No 164
>PRK00625 shikimate kinase; Provisional
Probab=98.40 E-value=8.8e-07 Score=89.00 Aligned_cols=137 Identities=10% Similarity=0.060 Sum_probs=76.9
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCc-------ccccHHHHH-HHHHHHhcCCceeccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDF-------SSLDLSLLS-KNISDIRNGRRTKVPI 590 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p-------~t~D~~ll~-~~L~~L~~g~~v~~P~ 590 (818)
.|.++|.+||||||+++.|++.++..++++|++......... +... +.--+..+. +.+..+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~-~~~i~eif~~~Ge~~fr~~E~~~l~~l---------- 70 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGAL-YSSPKEIYQAYGEEGFCREEFLALTSL---------- 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCC-CCCHHHHHHHHCHHHHHHHHHHHHHHh----------
Confidence 377899999999999999999999999999988653221110 0000 000000000 111111
Q ss_pred ccccccccCCCcceeeecCCcEEEEEecccchHhhhhc---CCEEEEEEcChhHHHHHHHhcCccccCcccch-hhHHHh
Q 003460 591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKS---LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ-NDIMMT 666 (818)
Q Consensus 591 yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~---~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~-~~~~~~ 666 (818)
.....||...|.....++.... -...||++++.+....|...|........... .+.+..
T Consensus 71 ----------------~~~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~ 134 (173)
T PRK00625 71 ----------------PVIPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQ 134 (173)
T ss_pred ----------------ccCCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHH
Confidence 0111244455555555443333 35799999999999888877754332211111 233333
Q ss_pred hcchhhhhccccCCcccEEEeCC
Q 003460 667 VFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 667 v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
..|.|+ +.||++|+.+
T Consensus 135 R~~~Y~-------~~ad~~i~~~ 150 (173)
T PRK00625 135 RIDRMR-------SIADYIFSLD 150 (173)
T ss_pred HHHHHH-------HHCCEEEeCC
Confidence 444444 4589988654
No 165
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.40 E-value=1.1e-07 Score=89.55 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=58.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCeEEec---cceecccc---cCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460 65 VGIGGPSGSGKTSLAEKLASVIGCTLISM---ENYRVGVD---EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~---D~~~~~~~---~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (818)
|+|+|++||||||+|+.|++.++..+.+. +....... .......++.+.....+..+.....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR------------ 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH------------
T ss_pred CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc------------
Confidence 79999999999999999999872111111 00000000 1112233343333333222211100
Q ss_pred cccccccccCCccEEEEEecccchhhhhcCCCEE-EEEEcCHHHHHHHHHHhccCC
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIR-VAVVGGVHFSLISKVQYDIGD 193 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~-I~Vda~~e~~l~Rri~Rd~~~ 193 (818)
.......+|+||...... .....+.. |||+|+.+++.+|...|....
T Consensus 69 -------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R~~~~ 116 (129)
T PF13238_consen 69 -------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKRGRKE 116 (129)
T ss_dssp -------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCTTTSC
T ss_pred -------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhCCCCC
Confidence 123345689999887652 11122233 999999999999998887543
No 166
>PRK14530 adenylate kinase; Provisional
Probab=98.39 E-value=1.5e-06 Score=90.42 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=67.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC--CCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN--DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~--~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (818)
.|+|.|++||||||+|+.|++.+|+.+|++|++.+.....+ ..+. ........ +..|..+.-..........
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~-~~~~~~~~---~~~g~~~~d~~~~~~l~~~-- 78 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDT-EYDTPGEY---MDAGELVPDAVVNEIVEEA-- 78 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccc-hHHHHHHH---HHcCCCCCHHHHHHHHHHH--
Confidence 68999999999999999999999999999999866322111 0110 00111111 1222211100001000010
Q ss_pred ccccccCCccEEEEEecccch---hhhh--cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 142 SKVIKGASSGVVIVDGTYALD---ARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~---~~l~--~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
+ ....-+|++|..--. ..+. ...|++||++++.+..+.|...|.
T Consensus 79 ---l--~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 79 ---L--SDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred ---H--hcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 0 112357889853322 1221 247999999999999998887774
No 167
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.37 E-value=1.7e-06 Score=95.13 Aligned_cols=144 Identities=13% Similarity=0.164 Sum_probs=79.0
Q ss_pred hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 003460 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (818)
Q Consensus 58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~ 137 (818)
+.+....|+|+|++||||||+++.|++.||++++++|......... ....+... .|.. .|.....
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~------~i~ei~~~-----~G~~----~fr~~e~ 193 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGL------SVSEIFAL-----YGQE----GYRRLER 193 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCC------CHHHHHHH-----HCHH----HHHHHHH
Confidence 4455678999999999999999999999999999999754321110 00110000 0110 0000000
Q ss_pred ccccccccccCCccEEEEEecccch-h----hhhcCCCEEEEEEcCHHHHHHHHHHhccCC----C-cCHHH---HHHhh
Q 003460 138 NRIGSKVIKGASSGVVIVDGTYALD-A----RLRSLLDIRVAVVGGVHFSLISKVQYDIGD----S-CSLDS---LIDSI 204 (818)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~-~----~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~----~-~s~e~---~~~~~ 204 (818)
.... .... ....+||..|..... + .+.. -.+.|||+++.+.+.+|...|.... . ...+. ..+..
T Consensus 194 ~~l~-~ll~-~~~~~VI~~Ggg~v~~~~~~~~l~~-~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R 270 (309)
T PRK08154 194 RALE-RLIA-EHEEMVLATGGGIVSEPATFDLLLS-HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASR 270 (309)
T ss_pred HHHH-HHHh-hCCCEEEECCCchhCCHHHHHHHHh-CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHH
Confidence 0000 0111 112345555554322 1 2222 2478999999999999888775321 1 11222 22333
Q ss_pred chhhhhccCCccccCcEEEECCC
Q 003460 205 FPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 205 ~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
.|.|+ +||++|+|+.
T Consensus 271 ~~~y~--------~ad~~I~t~~ 285 (309)
T PRK08154 271 EPLYA--------RADAVVDTSG 285 (309)
T ss_pred HHHHH--------hCCEEEECCC
Confidence 45553 4999999874
No 168
>PRK13948 shikimate kinase; Provisional
Probab=98.37 E-value=1.9e-06 Score=87.33 Aligned_cols=40 Identities=20% Similarity=0.326 Sum_probs=35.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (818)
+.+..|.++|.+||||||+++.|++.||..+|++|.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~ 47 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIER 47 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHH
Confidence 4567899999999999999999999999999999987553
No 169
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.37 E-value=9.9e-07 Score=88.60 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=31.7
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 552 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy 552 (818)
..++.+|.+.|++||||||+|+.|+..++ +.+++.|++.
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 34678999999999999999999999885 4566666654
No 170
>PRK14532 adenylate kinase; Provisional
Probab=98.37 E-value=2.6e-06 Score=86.40 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=67.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~-~~~~i~~p~~d~~~~~~~~~ 142 (818)
.|.|.|++||||||+|+.|++.+|+.+|++|++.+.....+. + +...+..+. .|+.+.-..........
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~----~---~~~~~~~~~~~g~~~~~~~~~~~~~~~--- 71 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGS----E---LGQRVKGIMDRGELVSDEIVIALIEER--- 71 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCC----H---HHHHHHHHHHCCCccCHHHHHHHHHHH---
Confidence 378999999999999999999999999999998664221111 0 111122211 23221110111111111
Q ss_pred cccccCCccEEEEEecccch-------hhh---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 143 KVIKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~-------~~l---~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.........+|++|..--. ..+ ....|..|++++|.+....|...|.
T Consensus 72 -~~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 72 -LPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred -HhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 1111223468889864321 111 1246899999999999888887774
No 171
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.34 E-value=3.5e-07 Score=85.97 Aligned_cols=110 Identities=19% Similarity=0.275 Sum_probs=62.0
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh----hhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----VKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~----~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~ 595 (818)
|+|+|++||||||+|+.|++.++ ....|.++.... .....+......+.+.....+..+.....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 68 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG--DIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIR---------- 68 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC--HHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHH----------
T ss_pred CEEECCCCCCHHHHHHHHHHHHC--cHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhc----------
Confidence 78999999999999999999873 122222221100 00011222334455554444444332111
Q ss_pred cccCCCcceeeecCCcEEEEEecccchHhhhhcCCEE-EEEEcChhHHHHHHHhcCcc
Q 003460 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLW-IAVVGGVHSHLISRVQRDKS 652 (818)
Q Consensus 596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~-I~v~~~~d~rl~Rri~Rd~~ 652 (818)
.......+|++|++.... .....+.. |+++++.+++..|...|...
T Consensus 69 ----------~~~~~~~~iid~~~~~~~-~~~~~~~~~i~L~~~~e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 69 ----------RMNKGRNIIIDGILSNLE-LERLFDIKFIFLDCSPEELRKRLKKRGRK 115 (129)
T ss_dssp ----------HHTTTSCEEEEESSEEEC-ETTEEEESSEEEE--HHHHHHHHHCTTTS
T ss_pred ----------ccccCCcEEEecccchhc-ccccceeeEEEEECCHHHHHHHHHhCCCC
Confidence 113346789999987642 11122223 99999999999999887643
No 172
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.34 E-value=2e-06 Score=89.38 Aligned_cols=116 Identities=16% Similarity=0.094 Sum_probs=67.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~ 142 (818)
.|.|.|++||||||+|+.|++.+|+.+|++++..+.......+ ....+.. +..|..+.-.........+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~-------~~~~~~~~~~~g~~~p~~~~~~~i~~~l-- 72 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTE-------LGKEAKSYMDAGELVPDEIVIGLVKERL-- 72 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccch-------HHHHHHHHHHcCCcCCHHHHHHHHHHHH--
Confidence 4899999999999999999999999999999876632222111 1111211 11222111101111111111
Q ss_pred cccccCCccEEEEEecccch---hhh----h---cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 143 KVIKGASSGVVIVDGTYALD---ARL----R---SLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~---~~l----~---~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.......-+|+||.---. ..+ . ...|..|+++++.+..+.|...|.
T Consensus 73 --~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (215)
T PRK00279 73 --AQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERLSGRR 128 (215)
T ss_pred --hccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHhCCc
Confidence 011112258999953221 112 1 246899999999999999988885
No 173
>PRK13949 shikimate kinase; Provisional
Probab=98.33 E-value=1.6e-06 Score=86.76 Aligned_cols=141 Identities=13% Similarity=0.114 Sum_probs=76.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcc--cCCCccccc-HHHHHHHHHHHhcCCceecccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDF--KYDDFSSLD-LSLLSKNISDIRNGRRTKVPIFDLET 595 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~--~~d~p~t~D-~~ll~~~L~~L~~g~~v~~P~yD~~~ 595 (818)
-|.|.|++||||||+++.|++.++..++++|++......... -+.+.+.-- .+.-.+.+..+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~------------- 69 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAE------------- 69 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHh-------------
Confidence 378899999999999999999999999999987653211000 011111000 1111112222110
Q ss_pred cccCCCcceeeecCCcEEEEEecccc-h---HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc----hhhHHHhh
Q 003460 596 GARSGFKELEVSEDCGVIIFEGVYAL-H---PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS----QNDIMMTV 667 (818)
Q Consensus 596 ~~r~~~~~~~~~~~~~vvIvEG~~~~-~---~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~----~~~~~~~v 667 (818)
..++||-.|-... . ..+....++.||++++.+..+.|...+. +++... ...+...+
T Consensus 70 -------------~~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~---~~RP~~~~~~~~~~~~~i 133 (169)
T PRK13949 70 -------------FEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAK---QQRPLLKGKSDEELLDFI 133 (169)
T ss_pred -------------CCCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCC---CCCCCCCCCChHHHHHHH
Confidence 1134555554432 2 2344556899999999998666653221 122111 12233334
Q ss_pred cchhhhhccccCCcccEEEeCC
Q 003460 668 FPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 668 ~p~~~~~I~p~~~~ADivI~n~ 689 (818)
...|..+..-+.. ||++|+.+
T Consensus 134 ~~l~~~R~~~Y~~-ad~~id~~ 154 (169)
T PRK13949 134 IEALEKRAPFYRQ-AKIIFNAD 154 (169)
T ss_pred HHHHHHHHHHHHh-CCEEEECC
Confidence 4445555333334 89988754
No 174
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.32 E-value=1.3e-06 Score=96.03 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=35.4
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
+.++...|+++|++||||||+++.|++.+|+.++++|....
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~ 169 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIE 169 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHH
Confidence 34456789999999999999999999999999999886643
No 175
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.32 E-value=5.2e-06 Score=83.50 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=61.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCe--EEeccceec-ccc-cCCCCCcccHHHHHHHHHhhhcCCccccccc---hhh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRV-GVD-EGNDLDSIDFDALVQNLQDLTEGKDTLIPMF---DYQ 135 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~--vI~~D~~~~-~~~-~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~---d~~ 135 (818)
.+|+|+|++||||||+++.|+..++.. +.....+.. ... +.........+.+.... ..+.-..+..+ ...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHRE---DGGAFALSWQAHGLSYG 78 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHH---HCCCEEEEEeecCcccc
Confidence 368999999999999999999987532 111111111 111 11111112222222111 11111111111 111
Q ss_pred hhccccccccccCCccEEEEEecccchhhhhcCC--CEEEEEEcCHHHHHHHHHHhc
Q 003460 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL--DIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~--D~~I~Vda~~e~~l~Rri~Rd 190 (818)
..... ... ......+|++|.......++..+ -..||++++.+...+|...|.
T Consensus 79 ~~~~i-~~~--~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 132 (179)
T TIGR02322 79 IPAEI-DQW--LEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARG 132 (179)
T ss_pred ChHHH-HHH--HhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcC
Confidence 11111 111 12345688888766444444332 278999999999999988775
No 176
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.30 E-value=1.6e-06 Score=105.50 Aligned_cols=164 Identities=16% Similarity=0.180 Sum_probs=93.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh----cccCCCcccccHHHHHHHHHHHhcCCceec---cc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK----DFKYDDFSSLDLSLLSKNISDIRNGRRTKV---PI 590 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~----~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~---P~ 590 (818)
.+|+|+||+||||||+|+.|++.+|..+++...+|+..... ..+.++ ...|.+.+.+.+..+..+-.+.+ |.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDA-ELVDEQVVTEAVGEFFTGLHFDISVDPD 80 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHHHHHHHhcCCCcch-hhhhhhhhHHHHHHHHhCCcEEEecCCC
Confidence 37999999999999999999999999999999999874321 111111 12344555665555543322221 10
Q ss_pred c--------ccc------------------------ccccCCCcceeeecC-------CcEEEEEecccchHhhhhcCCE
Q 003460 591 F--------DLE------------------------TGARSGFKELEVSED-------CGVIIFEGVYALHPEIRKSLDL 631 (818)
Q Consensus 591 y--------D~~------------------------~~~r~~~~~~~~~~~-------~~vvIvEG~~~~~~~l~~~~D~ 631 (818)
. |-. ...+. .......+ ..=+|+||--.+.-- .+-.|+
T Consensus 81 ~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~~~q--r~~~~~~~~~~~~~~~~~~v~eGRdigtvv-~p~a~~ 157 (712)
T PRK09518 81 SPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQ--RAYIAREASADSFSGGLGIVAEGRDITTVV-APDAEV 157 (712)
T ss_pred CcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHHHHH--HHHHhhcCccccccccCcEEEecCccceEE-ecCCCe
Confidence 0 000 00000 00000011 124999999887622 233699
Q ss_pred EEEEEcChhHHHHHHHhcCccccCcccch--hhHHHhhcchhhhhccccCCccc-EEEeCC
Q 003460 632 WIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAH-LKIRND 689 (818)
Q Consensus 632 ~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~AD-ivI~n~ 689 (818)
++|++++.+.|..||..+... .+.+. .+....=.... +.+.|.....| ++|+++
T Consensus 158 K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts 214 (712)
T PRK09518 158 RILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNS 214 (712)
T ss_pred EEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECC
Confidence 999999999999999988743 22221 11111111122 56677544444 556665
No 177
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.29 E-value=2.1e-06 Score=88.91 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=69.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhcccccc
Q 003460 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGSK 143 (818)
Q Consensus 65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~~ 143 (818)
|.|.|++||||||+|+.|++.+|+.+|+++++.+.......+ +...+.. +..|..+.-.........+...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~-------~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~- 73 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTP-------LGKKAKEYMEKGELVPDEIVNQLVKERLTQ- 73 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccH-------HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Confidence 789999999999999999999999999999976642222111 1111222 1223222111111111111110
Q ss_pred ccccCCccEEEEEecccch---hhhh---c-CCCEEEEEEcCHHHHHHHHHHhc
Q 003460 144 VIKGASSGVVIVDGTYALD---ARLR---S-LLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~---~~l~---~-~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
......-+|+||..--. ..+. . ..|..|++++|.+..+.|...|.
T Consensus 74 --~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 74 --NQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred --CcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 01113468999963322 1222 2 47899999999999999988774
No 178
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.28 E-value=1.1e-06 Score=74.62 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=23.1
Q ss_pred EEEEEecccchH----hhhhcCCEEEEEEc
Q 003460 612 VIIFEGVYALHP----EIRKSLDLWIAVVG 637 (818)
Q Consensus 612 vvIvEG~~~~~~----~l~~~~D~~I~v~~ 637 (818)
++|+||.+.... .+.+..|++||+++
T Consensus 34 ~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 899999999874 57889999999987
No 179
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.28 E-value=4.1e-06 Score=84.57 Aligned_cols=117 Identities=19% Similarity=0.210 Sum_probs=68.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHH-hcCCceeccc---cc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDI-RNGRRTKVPI---FD 592 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L-~~g~~v~~P~---yD 592 (818)
..+|+|.|++||||||+|+.|++.+|..++++|++.+..... ..+ . .+.+..+ .+|.. .|. +.
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~----~~~----~---~~~~~~~~~~~~~--~~~~~~~~ 69 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVAS----GSE----R---GKQLQAIMESGDL--VPLDTVLD 69 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc----CCH----H---HHHHHHHHHCCCC--CCHHHHHH
Confidence 347899999999999999999999999999999987642110 000 0 1111111 11211 110 00
Q ss_pred ccccccCCCcceeeecCCcEEEEEecccch---Hhhh---hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460 593 LETGARSGFKELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 593 ~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
. ..+.. ........-+|+||..-.. ..+. ...|..||++++.+..+.|...|..
T Consensus 70 ~-l~~~~----~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 70 L-LKDAM----VAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred H-HHHHH----HcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 0 00000 0011224567889965321 1121 2468999999999999999888763
No 180
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.28 E-value=1.7e-06 Score=84.98 Aligned_cols=104 Identities=23% Similarity=0.272 Sum_probs=59.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~ 135 (818)
++.+|-|+|.+||||||+|+.|.+.| | +.+++.|.+..++...-..+.-|.....+.+..+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A------------- 67 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVA------------- 67 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHH-------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHH-------------
Confidence 36799999999999999999999988 3 67889999887654422222222222222211110
Q ss_pred hhccccccccccCCccEEEEEecccch---hhhhcCCC----EEEEEEcCHHHHHHH
Q 003460 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD----IRVAVVGGVHFSLIS 185 (818)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~D----~~I~Vda~~e~~l~R 185 (818)
........++|+..+-.+. ...+..+. +-|||+||.+++.+|
T Consensus 68 --------~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 68 --------KLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp --------HHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred --------HHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHh
Confidence 0111223466666665554 23343333 669999999998655
No 181
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.27 E-value=5.1e-06 Score=85.26 Aligned_cols=41 Identities=32% Similarity=0.389 Sum_probs=34.3
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccceecc
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVG 99 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~ 99 (818)
..++.+|+|+|.+||||||+++.|+..+ ++.+++.|++...
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~ 66 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG 66 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh
Confidence 4667899999999999999999999977 3577888887643
No 182
>PRK14527 adenylate kinase; Provisional
Probab=98.27 E-value=4.6e-06 Score=85.01 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=70.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceecccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDL 593 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~ 593 (818)
..+.+|.|.|++||||||+|+.|++.+|...+++|+..+..... ++ .+.+.+.. +.+|..+.......
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~-------~~----~~~~~~~~~~~~g~~~p~~~~~~ 72 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVAR-------GT----ELGQRAKPIMEAGDLVPDELILA 72 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhc-------Cc----HHHHHHHHHHHcCCCCcHHHHHH
Confidence 45778999999999999999999999999999999998753211 00 01111111 12232211100000
Q ss_pred cccccCCCcceeeecCCcEEEEEecccchH---hhh-------hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460 594 ETGARSGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
...++. . ..+..-+|+||..--.. .+. ..++..+|++++.++.+.|...|..
T Consensus 73 l~~~~l-----~-~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~ 134 (191)
T PRK14527 73 LIRDEL-----A-GMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERAR 134 (191)
T ss_pred HHHHHH-----h-cCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence 000110 0 00113488999653221 111 2367789999999999999998853
No 183
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=1e-07 Score=102.87 Aligned_cols=172 Identities=20% Similarity=0.211 Sum_probs=93.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCCC-CCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~~-~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~ 137 (818)
.+.+|.|+||+|||||-+|-.||+.+|+.|||.|++ |++++-+.. |..-+.....++|-++..-.+ .+...++...
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e-~ysa~~f~~~ 80 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTE-SYSAAEFQRD 80 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccc-cccHHHHHHH
Confidence 467899999999999999999999999999999996 888765432 322222222222222222111 1112222221
Q ss_pred ccccccccccCCccEEEEEecccchhhhhc-CCCEEEEEEcCHHHHHHHHHHhccCCCc--CHHHHHHhhchhhhhccCC
Q 003460 138 NRIGSKVIKGASSGVVIVDGTYALDARLRS-LLDIRVAVVGGVHFSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEP 214 (818)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~-~~D~~I~Vda~~e~~l~Rri~Rd~~~~~--s~e~~~~~~~p~~~~~Iep 214 (818)
.......+.....-.++|.|.+++...+.. +.+.. .++.+. +++........+ .+.+.+....|
T Consensus 81 a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p---~~~~~~--r~~~~~~~~~~g~~~L~~~L~~~Dp-------- 147 (308)
T COG0324 81 ALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLP---EADPEV--RRRLEAELAELGNDALHAELKKIDP-------- 147 (308)
T ss_pred HHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCC---CCCHHH--HHHHHHHHHhcCHHHHHHHHHhhCH--------
Confidence 111111222333446899999998755443 22221 223333 232211111111 11222333333
Q ss_pred ccccCcEEEECCCCCChhhhhhcccCccc-CCcccccccccc
Q 003460 215 DLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQG 255 (818)
Q Consensus 215 ~~~~ADiII~N~~~~~~~~~~~~l~~~~~-~l~~~~~~~~~~ 255 (818)
..|.-|-+|| ++...++++. .++|++.+.+..
T Consensus 148 --~~a~~i~pnD-------~~Ri~RALEv~~~tGk~~s~~~~ 180 (308)
T COG0324 148 --EAAAKIHPND-------PQRIIRALEVYYLTGKPISELQK 180 (308)
T ss_pred --HHHHhcCCCc-------hhHHHHHHHHHHHHCCCHHHHhh
Confidence 3444566688 7888888887 777777666543
No 184
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.26 E-value=2.6e-06 Score=83.10 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=32.1
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
|.|.|++||||||+|+.|++.+|...++.|.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~ 36 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQ 36 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHH
Confidence 67899999999999999999999999999988653
No 185
>PLN02199 shikimate kinase
Probab=98.26 E-value=6.1e-06 Score=88.71 Aligned_cols=58 Identities=22% Similarity=0.353 Sum_probs=43.4
Q ss_pred ccchhhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc
Q 003460 40 SFDHGYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV 100 (818)
Q Consensus 40 s~~~~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~ 100 (818)
||++. .+-+..+.... .-+...|.++|.+||||||+++.||+.+|+.+|++|.+....
T Consensus 83 ~~de~--~Lk~~a~~i~~-~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~ 140 (303)
T PLN02199 83 PFDED--ILKRKAEEVKP-YLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQA 140 (303)
T ss_pred CCCHH--HHHHHHHHHHH-HcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHH
Confidence 78764 24344444333 223456899999999999999999999999999999976643
No 186
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.25 E-value=8e-06 Score=80.84 Aligned_cols=34 Identities=29% Similarity=0.483 Sum_probs=31.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (818)
Q Consensus 65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (818)
|+|+|++||||||+|+.|+..+|..+++.|+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~ 34 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHP 34 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccC
Confidence 5789999999999999999999999999999854
No 187
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.24 E-value=4.7e-06 Score=87.48 Aligned_cols=122 Identities=18% Similarity=0.150 Sum_probs=72.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhcc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKNR 139 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~-~~~~i~~p~~d~~~~~~ 139 (818)
.++.|.|.|++||||||+|+.|++.+|+.+|++|++.+........ +...+..+. .|..+.-.........+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~-------lg~~i~~~~~~G~lvpd~iv~~lv~~~ 77 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTT-------IGKEIQKVVTSGNLVPDNLVIAIVKDE 77 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCCh-------HHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 4566999999999999999999999999999999987743222111 112222222 23211101111111111
Q ss_pred ccccccccCCccEEEEEecccc-h--hhhh--cCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 140 IGSKVIKGASSGVVIVDGTYAL-D--ARLR--SLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~-~--~~l~--~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
... ........+|+||.--- . ..+. ...|..++++++.+..+.|...|..
T Consensus 78 l~~--~~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~ 132 (229)
T PTZ00088 78 IAK--VTDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRI 132 (229)
T ss_pred HHh--hccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcC
Confidence 100 00122456899996211 1 1111 3478999999999999988888753
No 188
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.24 E-value=4.4e-06 Score=83.96 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=23.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeE
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTL 90 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~v 90 (818)
.+|+|.|++||||||+++.|+..++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~ 29 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLK 29 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcccc
Confidence 4799999999999999999998665433
No 189
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.24 E-value=2e-07 Score=101.74 Aligned_cols=42 Identities=36% Similarity=0.434 Sum_probs=37.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc--eeccccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDE 102 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~ 102 (818)
.+.+|+|+||+||||||+|..|++.+++.+|++|+ +|+++.-
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i 46 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDI 46 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccc
Confidence 35789999999999999999999999999999999 5887654
No 190
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.22 E-value=1.1e-05 Score=81.72 Aligned_cols=105 Identities=20% Similarity=0.258 Sum_probs=62.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~ 134 (818)
..+.+|+|+|++||||||+++.|+..+ | +.+++.|.+.+.+...... ..+...+.+..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~---~~~~~~~~~~~~~------------ 80 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGF---SEEDRKENIRRIG------------ 80 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCC---CHHHHHHHHHHHH------------
Confidence 556899999999999999999999887 2 5678888876543321111 1111111111110
Q ss_pred hhhccccccccccCCccEEEEEecccch---hhhhcCCC----EEEEEEcCHHHHHHH
Q 003460 135 QQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD----IRVAVVGGVHFSLIS 185 (818)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~D----~~I~Vda~~e~~l~R 185 (818)
. .. ........+||++++.... ..++..+. ..+|++++.+.+..|
T Consensus 81 ---~-~~--~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 81 ---E-VA--KLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred ---H-HH--HHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHh
Confidence 0 00 0011234578888876654 23333332 569999999988777
No 191
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.21 E-value=8.8e-06 Score=81.79 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=31.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCe--EEeccceecc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCT--LISMENYRVG 99 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~--vI~~D~~~~~ 99 (818)
.+|.++|++||||||+|+.|++.++.. .++.|+|+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 479999999999999999999988754 4588887654
No 192
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.21 E-value=1.9e-06 Score=87.64 Aligned_cols=64 Identities=20% Similarity=0.185 Sum_probs=45.9
Q ss_pred cCCEEEEEEcChhHHHHHHHhcCccccCcccch------hhHHHhhcchhhhhccccCCcccEEEeCC-CCCccCc
Q 003460 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRND-FDPVLSP 696 (818)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~-~~~~l~~ 696 (818)
.-|+.||++++.++-+.|-.+| |+..+. .+|+..+...|..|++-...+-++.|+.+ ++.....
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~R-----gR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~ 196 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKR-----GRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNE 196 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHh-----CCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCH
Confidence 5689999999999877776554 555552 36888888888888887766777877643 4544333
No 193
>PRK13808 adenylate kinase; Provisional
Probab=98.20 E-value=3.7e-06 Score=92.34 Aligned_cols=115 Identities=18% Similarity=0.125 Sum_probs=68.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~~ 142 (818)
.|.|.||+||||||+|..|++.+|+.+|++|++.+.......+. . ..+..+ ..|..+.-.........+..
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~----g---~~~~~~~~~G~lVPdeiv~~li~e~l~- 73 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPV----G---LKAKDIMASGGLVPDEVVVGIISDRIE- 73 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChh----h---HHHHHHHHcCCCCCHHHHHHHHHHHHh-
Confidence 37889999999999999999999999999999876422221111 0 111111 12221111111111111111
Q ss_pred cccccCCccEEEEEecccchh---h----hh---cCCCEEEEEEcCHHHHHHHHHHh
Q 003460 143 KVIKGASSGVVIVDGTYALDA---R----LR---SLLDIRVAVVGGVHFSLISKVQY 189 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~~---~----l~---~~~D~~I~Vda~~e~~l~Rri~R 189 (818)
......-+|+||.---.. . +. -..|++|++++|.++.+.|...|
T Consensus 74 ---~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 74 ---QPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred ---cccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 111223589999643221 1 11 14799999999999999998877
No 194
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.19 E-value=6.6e-06 Score=83.70 Aligned_cols=161 Identities=11% Similarity=0.022 Sum_probs=81.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~ 595 (818)
++++|.|+|||||||||+++.|.+...-...+...-=++...++.+-.+-.-.+. .+....+..|+-++.-.|.-..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~---~~F~~~i~~~~f~e~~~~~g~~ 79 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTI---EEFKKGIADGEFLEWAEVHDNY 79 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCH---HHHHHHHHcCCeEEEEEECCee
Confidence 6788999999999999999999876532122221111111111111000000111 2223445566666665554322
Q ss_pred cccCCCcce-eeecCCcEEEEEecccchHhhhhcCC---EEEEEEcCh-hHHHHHHHhcCccccCcccch-hhHHHhhcc
Q 003460 596 GARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSLD---LWIAVVGGV-HSHLISRVQRDKSRMGCFMSQ-NDIMMTVFP 669 (818)
Q Consensus 596 ~~r~~~~~~-~~~~~~~vvIvEG~~~~~~~l~~~~D---~~I~v~~~~-d~rl~Rri~Rd~~~rg~~~~~-~~~~~~v~p 669 (818)
..-.. ... .......++|++.-.-+...++..+. ..||+.+|. +....|+..|+.. +.+. .+.+....+
T Consensus 80 YGt~~-~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~----s~e~i~~Rl~~~~~ 154 (186)
T PRK14737 80 YGTPK-AFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTD----SEESIEKRIENGII 154 (186)
T ss_pred ecCcH-HHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCC----CHHHHHHHHHHHHH
Confidence 11100 111 12345678888865555455555543 689998865 5566666665421 2111 222222211
Q ss_pred hhhhhccccCCcccEEEeCC
Q 003460 670 MFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 670 ~~~~~I~p~~~~ADivI~n~ 689 (818)
.. .....+|.+|.|+
T Consensus 155 -e~----~~~~~~D~vI~N~ 169 (186)
T PRK14737 155 -EL----DEANEFDYKIIND 169 (186)
T ss_pred -HH----hhhccCCEEEECc
Confidence 11 2246799999997
No 195
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.19 E-value=3.2e-06 Score=85.83 Aligned_cols=117 Identities=18% Similarity=0.109 Sum_probs=67.6
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccccC
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARS 599 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~ 599 (818)
|.|.|++||||||+|+.|++.+|+.++++|+..+...... +.....+.+. +.+|..+.-.........+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~-------~~~~~~~~~~---~~~g~~~~~~~~~~l~~~~l 71 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASG-------TELGKKAKEY---IDSGKLVPDEIVIKLLKERL 71 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcC-------ChHHHHHHHH---HHcCCccCHHHHHHHHHHHH
Confidence 6789999999999999999999999999999887532111 0001111111 11222111100000000000
Q ss_pred CCcceeeecCCcEEEEEecccch------Hhhhh---cCCEEEEEEcChhHHHHHHHhcCc
Q 003460 600 GFKELEVSEDCGVIIFEGVYALH------PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 600 ~~~~~~~~~~~~vvIvEG~~~~~------~~l~~---~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
.......-+|++|.-.-. ..... ..+..|+++++.++.+.|...|..
T Consensus 72 -----~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 72 -----KKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred -----hcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 000012457888854321 11222 568999999999999999988864
No 196
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.18 E-value=8.5e-06 Score=80.44 Aligned_cols=46 Identities=30% Similarity=0.446 Sum_probs=39.3
Q ss_pred hcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccC
Q 003460 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEG 103 (818)
Q Consensus 58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~ 103 (818)
.+.++.+|-+||.|||||||+|.+|.+.| | +.++|.|....++...
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~d 69 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRD 69 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCC
Confidence 45667999999999999999999999988 4 6789999998877644
No 197
>PRK14528 adenylate kinase; Provisional
Probab=98.17 E-value=9e-06 Score=82.70 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=69.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
.|.|.|++||||||+|+.|++.+|+.++++|+..+..-... . ++..+.-.-+.+|+.+.-........++
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~----~------~~g~~~~~~~~~g~lvp~~~~~~~~~~~ 72 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQ----T------AMGIEAKRYMDAGDLVPDSVVIGIIKDR 72 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcC----C------HHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 47789999999999999999999999999999987521110 0 0000111112233322111111111111
Q ss_pred CCCcceeeecCCcEEEEEecccch-------Hhhh---hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALH-------PEIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~-------~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
.. ......-+|+||.---. ..+. ...|..|+++++.+..+.|...|..
T Consensus 73 l~-----~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~ 130 (186)
T PRK14528 73 IR-----EADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAE 130 (186)
T ss_pred Hh-----CcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence 10 00112458999953211 1111 2479999999999999999988854
No 198
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.17 E-value=3.3e-07 Score=99.39 Aligned_cols=172 Identities=13% Similarity=0.014 Sum_probs=92.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCC-CCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (818)
+.+|.|+||+|||||.||-.||+. +..+||+|++ |++++-.. .|..-+.....++|-++....+. +...++....
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~-~sv~~f~~~a 81 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKE-YNLGIFYKEA 81 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCc-eeHHHHHHHH
Confidence 358999999999999999999998 6799999995 88876543 23333333333344333322221 1111221111
Q ss_pred cccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhccCCcccc
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHH 218 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~Iep~~~~ 218 (818)
...-..+.......|++.|++++-..+..-++.. -..+.+.+ ..+..... ....+ ..+++..+-+...
T Consensus 82 ~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~--p~~~~~~r--~~~~~~~~-~~g~~-------~l~~~L~~~DP~~ 149 (300)
T PRK14729 82 LKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPST--PPVSSKIR--IYVNNLFT-LKGKS-------YLLEELKRVDFIR 149 (300)
T ss_pred HHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCC--CCCCHHHH--HHHHHHHH-hcCHH-------HHHHHHHhcCHHH
Confidence 1111122234455799999999886655322211 01233322 11211111 11111 1222222333345
Q ss_pred CcEEEECCCCCChhhhhhcccCccc-CCccccccccc
Q 003460 219 AQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ 254 (818)
Q Consensus 219 ADiII~N~~~~~~~~~~~~l~~~~~-~l~~~~~~~~~ 254 (818)
|.-+-+|| ++.++++.+. ..+|...+.+.
T Consensus 150 A~~i~pnd-------~~Ri~RALEv~~~tG~~~s~~~ 179 (300)
T PRK14729 150 YESINKND-------IYRIKRSLEVYYQTGIPISQFL 179 (300)
T ss_pred HhhCCcCC-------HHHHHHHHHHHHHhCCChHhhh
Confidence 55566677 7889999888 56776665543
No 199
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.17 E-value=6.6e-06 Score=89.76 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=34.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceeccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGV 100 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~ 100 (818)
+.+|.++|++||||||+|+.|++.+ ++.+++.|.+...+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~ 41 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSL 41 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHh
Confidence 4688999999999999999999999 89999999986543
No 200
>PLN02165 adenylate isopentenyltransferase
Probab=98.17 E-value=2.9e-06 Score=92.91 Aligned_cols=44 Identities=27% Similarity=0.299 Sum_probs=38.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccC
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEG 103 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~ 103 (818)
....+|+|.||+||||||||..||..++..+|++|.+ |+++.-.
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIg 86 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKIT 86 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccc
Confidence 3445899999999999999999999999999999996 7776544
No 201
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.15 E-value=1.4e-05 Score=80.65 Aligned_cols=117 Identities=20% Similarity=0.229 Sum_probs=72.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~ 142 (818)
.|.|.|+|||||||+|+.|++.++.+.||+|+++++...... .+...... +..++-+.-..+......+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t-------~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERT-------ELGEEIKKYIDKGELVPDEIVNGLVKERLDE 74 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCC-------hHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 588999999999999999999999999999999885433221 12222222 2223211111222333333221
Q ss_pred cccccCCccEEEEEecccch-------hhhh---cCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 143 KVIKGASSGVVIVDGTYALD-------ARLR---SLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~-------~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
. .... .+|++|.--.. ..+. .-.|..+.++.+.+..+.|...|..
T Consensus 75 ~---d~~~-~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~ 129 (178)
T COG0563 75 A---DCKA-GFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV 129 (178)
T ss_pred h---cccC-eEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence 1 1112 58888763322 1111 3568999999999888888888764
No 202
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.14 E-value=1e-05 Score=81.22 Aligned_cols=39 Identities=33% Similarity=0.407 Sum_probs=32.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG 99 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~ 99 (818)
...+|+|+|++||||||+|+.|+..+. +.+++.|.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~ 46 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTN 46 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHH
Confidence 346899999999999999999999872 567899887554
No 203
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.13 E-value=2.3e-05 Score=76.33 Aligned_cols=36 Identities=25% Similarity=0.453 Sum_probs=33.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+|.++|++||||||+|+.|++.+++.+++.|++...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccH
Confidence 477899999999999999999999999999999864
No 204
>PRK13946 shikimate kinase; Provisional
Probab=98.12 E-value=7.1e-06 Score=83.22 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=32.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy 552 (818)
.+..|.++|++||||||+++.|++.||..+++.|...
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~ 45 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEI 45 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHH
Confidence 3457889999999999999999999999999999753
No 205
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.12 E-value=5.8e-06 Score=82.54 Aligned_cols=36 Identities=25% Similarity=0.465 Sum_probs=32.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.|.|+|++||||||+++.|++.+|..+++.|.+...
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~ 39 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQS 39 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHH
Confidence 367789999999999999999999999999988653
No 206
>PRK14530 adenylate kinase; Provisional
Probab=98.12 E-value=6.3e-06 Score=85.66 Aligned_cols=118 Identities=14% Similarity=0.170 Sum_probs=67.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
.|.|.|++||||||+|+.|++.+|+.++++|++.+.......+ +.++ .+..... .+..|..+.-..........
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~--~~~~-~~~~~~~---~~~~g~~~~d~~~~~~l~~~ 78 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDIS--DMDT-EYDTPGE---YMDAGELVPDAVVNEIVEEA 78 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcc--cccc-hHHHHHH---HHHcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999999999999999998853211100 0000 0001111 12233221111100000000
Q ss_pred CCCcceeeecCCcEEEEEecccch---Hhhh--hcCCEEEEEEcChhHHHHHHHhcC
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALH---PEIR--KSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~---~~l~--~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
....+-+|++|.-... ..+. ...|..|+++++.+..+.|...|.
T Consensus 79 --------l~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 79 --------LSDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred --------HhcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 0112357889843322 1222 237899999999999998887774
No 207
>PLN02674 adenylate kinase
Probab=98.12 E-value=2.4e-05 Score=82.64 Aligned_cols=120 Identities=12% Similarity=-0.003 Sum_probs=72.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~ 138 (818)
.....|.|.|++||||||+|+.|++.+|+.+|+++++.+.......+ +-..+.. +..|+-+.-.........
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~-------~g~~i~~~~~~G~lvpd~iv~~lv~~ 101 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTP-------LGIKAKEAMDKGELVSDDLVVGIIDE 101 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccCh-------hhHHHHHHHHcCCccCHHHHHHHHHH
Confidence 33466889999999999999999999999999999987643222211 1111121 123332221111111111
Q ss_pred cccccccccCCccEEEEEecccch---hh----hh---cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALD---AR----LR---SLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~---~~----l~---~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
+.. ......-+|++|.=--. .. +. -..|.+|+++++.+..++|...|.
T Consensus 102 ~l~----~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 102 AMK----KPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred HHh----CcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 111 11122468889873322 11 11 247899999999999999988874
No 208
>PRK14531 adenylate kinase; Provisional
Probab=98.10 E-value=1.7e-05 Score=80.42 Aligned_cols=115 Identities=14% Similarity=0.179 Sum_probs=66.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceecccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGA 597 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~~~~ 597 (818)
.|.|.|++||||||+|+.|++.+|+.++|++|..+.+.... + .+.+.+.. +..|..+.-........+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~-------~----~~~~~~~~~~~~G~~v~d~l~~~~~~~ 72 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAG-------S----ALGQEAEAVMNRGELVSDALVLAIVES 72 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcC-------C----HHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 57889999999999999999999999999999988632111 0 01111111 122321110000000000
Q ss_pred cCCCcceeeecCCcEEEEEecccchH---hhh-------hcCCEEEEEEcChhHHHHHHHhcC
Q 003460 598 RSGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 598 r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
+. ... ...-+|+||...-.. .+. ..+|..++++++.++...|...|.
T Consensus 73 ~l-----~~~-~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 129 (183)
T PRK14531 73 QL-----KAL-NSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARG 129 (183)
T ss_pred HH-----hhc-cCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCC
Confidence 00 000 123357798865321 111 135789999999999999988774
No 209
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.09 E-value=1.7e-05 Score=78.73 Aligned_cols=127 Identities=14% Similarity=0.078 Sum_probs=78.4
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (818)
...+.||.|.|++||||-|.|..+++.+|..++|+++..+.-.... ++-....+.+. +..|.-+.......-
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~--gse~g~~I~~~---i~~G~iVP~ei~~~L--- 76 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA--GSERGALIKEI---IKNGDLVPVEITLSL--- 76 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc--cChHHHHHHHH---HHcCCcCcHHHHHHH---
Confidence 3567899999999999999999999999999999999866332221 11111122222 223332221111111
Q ss_pred cccccccccCCccEEEEEeccc-------chhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC
Q 003460 139 RIGSKVIKGASSGVVIVDGTYA-------LDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS 194 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l-------~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~ 194 (818)
..............++||.== ++..+....|+++|++|+.++++.|.+.|....+
T Consensus 77 -L~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~ 138 (195)
T KOG3079|consen 77 -LEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNS 138 (195)
T ss_pred -HHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCC
Confidence 111111122223388888632 2233333579999999999999999999997633
No 210
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.09 E-value=6.3e-06 Score=85.37 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=68.0
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceeccccccccccc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~~~~r 598 (818)
|.|.|++||||||+|+.|++.+|+.+||++|..+..-... .+ +.+.+.. +.+|..+.--.......++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~----~~-------~~~~~~~~~~~g~~vp~~~~~~l~~~~ 70 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAG----TP-------LGKKAKEYMEKGELVPDEIVNQLVKER 70 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccc----cH-------HHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999999999999987521110 00 0111111 2233322111111111111
Q ss_pred CCCcceeeecCCcEEEEEecccch---Hhhh---h-cCCEEEEEEcChhHHHHHHHhcC
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALH---PEIR---K-SLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~---~~l~---~-~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
.. .......-+|++|.---. ..+. . ..|..|+++++.+..+.|...|.
T Consensus 71 i~----~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 71 LT----QNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred Hh----cCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 10 000113458999953322 1222 2 46899999999999999988774
No 211
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.09 E-value=1.7e-05 Score=93.89 Aligned_cols=117 Identities=19% Similarity=0.179 Sum_probs=68.2
Q ss_pred HHHHHHHHH-hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC------eEEeccceecccccCCCCCcccHHHHHHHHHhh
Q 003460 49 VKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC------TLISMENYRVGVDEGNDLDSIDFDALVQNLQDL 121 (818)
Q Consensus 49 ~~~i~~~~~-~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~------~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l 121 (818)
++.+....+ +..+..+|.|+|.+||||||+|+.|++.|+. .+++.|.+.+.+.........+.+...+.+..+
T Consensus 378 ~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~ 457 (568)
T PRK05537 378 VAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFV 457 (568)
T ss_pred HHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence 333333333 4456789999999999999999999999985 889999886554322111112222111111100
Q ss_pred hcCCccccccchhhhhccccccccccCCccEEEEEecccch---hhhhcC----CC-EEEEEEcCHHHHHHHH
Q 003460 122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSL----LD-IRVAVVGGVHFSLISK 186 (818)
Q Consensus 122 ~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~----~D-~~I~Vda~~e~~l~Rr 186 (818)
... ......++|++.+..+. +..+.+ -. +.||++++.+.+.+|.
T Consensus 458 -------------------a~~--v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~ 509 (568)
T PRK05537 458 -------------------ASE--ITKNGGIAICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRD 509 (568)
T ss_pred -------------------HHH--HHhCCCEEEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhc
Confidence 000 11223577777665544 222222 23 4799999999887663
No 212
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.07 E-value=4.6e-06 Score=84.83 Aligned_cols=59 Identities=7% Similarity=-0.026 Sum_probs=41.4
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCC-c---CHHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460 168 LLDIRVAVVGGVHFSLISKVQYDIGDS-C---SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~---s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
.-|+.||++|+.++-+.|..+|.+.-. . .-....+.+...|..+++-.-..-++.|+.+
T Consensus 126 ~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~ 188 (216)
T COG1428 126 RPDLLIYLDASLETLLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGIDGD 188 (216)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeeccc
Confidence 569999999999998888888875443 1 1135666666777777766655666777554
No 213
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.07 E-value=1.4e-05 Score=84.92 Aligned_cols=134 Identities=16% Similarity=0.227 Sum_probs=72.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (818)
+|.++|++||||||+|+.|++.++ +.+++.|.+...+..+.. ..+. .+... ...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~----~~e~---~~~~~--------------~~~ 59 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKE----KYEE---FIRDS--------------TLY 59 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhH----HhHH---HHHHH--------------HHH
Confidence 488999999999999999999873 455666665332211100 0010 00000 000
Q ss_pred cccccccccCCccEEEEEecccch---hhhh------cCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhh
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALD---ARLR------SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~---~~l~------~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~ 209 (818)
.+. ..+ .....||+||..... ..+. ..-.+.||+++|.+.+++|...|... .+ ++.+.. .+.
T Consensus 60 ~i~-~~l--~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~--~~-~~~i~~---l~~ 130 (249)
T TIGR03574 60 LIK-TAL--KNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEK--IP-NEVIKD---MYE 130 (249)
T ss_pred HHH-HHH--hCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCC--CC-HHHHHH---HHH
Confidence 000 011 123468888876543 1222 11236789999999999998877531 22 333333 333
Q ss_pred hccCCcc----ccCcEEEECCC
Q 003460 210 KHIEPDL----HHAQIRINNRF 227 (818)
Q Consensus 210 ~~Iep~~----~~ADiII~N~~ 227 (818)
+|-+|.. ..++++|+.+.
T Consensus 131 r~e~p~~~~~wd~~~~~vd~~~ 152 (249)
T TIGR03574 131 KFDEPGTKYSWDLPDLTIDTTK 152 (249)
T ss_pred hhCCCCCCCCccCceEEecCCC
Confidence 3333432 34888887653
No 214
>PRK12338 hypothetical protein; Provisional
Probab=98.06 E-value=1.1e-05 Score=87.92 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=32.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (818)
.|.+|+|+|+|||||||+|+.||+.+|+..+..+|+.+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r 40 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIR 40 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHH
Confidence 57899999999999999999999999998775555433
No 215
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.06 E-value=2.4e-05 Score=78.52 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=32.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
+..|.|.|++||||||+++.|+..++..+++.|....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~ 40 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE 40 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHH
Confidence 3358889999999999999999999999999997543
No 216
>PRK14532 adenylate kinase; Provisional
Probab=98.05 E-value=2.4e-05 Score=79.40 Aligned_cols=115 Identities=18% Similarity=0.228 Sum_probs=65.7
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceeccccccccccc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~~~~r 598 (818)
|.+.|++||||||+|+.|++.+|+.++|+||..+.+-.. + + + +.+.+.. +..|+.+.--........+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~----~---~-~---~~~~~~~~~~~g~~~~~~~~~~~~~~~ 71 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIAS----G---S-E---LGQRVKGIMDRGELVSDEIVIALIEER 71 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHc----C---C-H---HHHHHHHHHHCCCccCHHHHHHHHHHH
Confidence 667999999999999999999999999999998753110 0 0 0 0111111 1123222100000000000
Q ss_pred CCCcceeeecCCcEEEEEecccchH---h----hh---hcCCEEEEEEcChhHHHHHHHhcC
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALHP---E----IR---KSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~~---~----l~---~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
. .......-+|++|..--.. . +. ...|..|++++|.++.+.|...|.
T Consensus 72 ~-----~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 72 L-----PEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred H-----hCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 0 0011234578898654221 1 11 235789999999999888887763
No 217
>PRK12338 hypothetical protein; Provisional
Probab=98.05 E-value=8.6e-06 Score=88.86 Aligned_cols=39 Identities=23% Similarity=0.474 Sum_probs=35.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+|.+|+|+|+|||||||+|+.|+..+|...+..+|+.+.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~ 41 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIRE 41 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHH
Confidence 589999999999999999999999999888877777665
No 218
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.05 E-value=3.7e-05 Score=74.18 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=36.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (818)
+-+.+|.|.|++||||||++++|++.||+..++.|+|+.
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp 48 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHP 48 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCC
Confidence 335689999999999999999999999999999999976
No 219
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.04 E-value=5.4e-06 Score=100.15 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=77.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh--cccCCCcccccHHHHHHHHHHHhc---CCcee---
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYDDFSSLDLSLLSKNISDIRN---GRRTK--- 587 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~--~~~~d~p~t~D~~ll~~~L~~L~~---g~~v~--- 587 (818)
+..+|.|.||+||||||+|+.|++.||..+++.|.+|+.-... +.+. +-.|.+.+.+.+..+.- +..+.
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGV---ALDDEAAIAALARGLPVRFEGDRIWLGG 517 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCc---CCCCHHHHHHHHhcCCeeecCCeEEECC
Confidence 3558999999999999999999999999999999999974221 1111 11244445554443221 00011
Q ss_pred ---------------------cccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHH
Q 003460 588 ---------------------VPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646 (818)
Q Consensus 588 ---------------------~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr 646 (818)
.|.++.....+. .... ...=+|+||=-.+.-- .+..|++||++++.+.|-.||
T Consensus 518 ~~~~~~i~~~~v~~~~s~~a~~~~vr~~l~~~q----r~~~-~~~~~v~eGRdigtvv-~p~a~~kifl~a~~~~Ra~Rr 591 (661)
T PRK11860 518 EDVTDAIRTEAAGMGASRVSALPAVRAALLALQ----RSFR-RLPGLVADGRDMGTVI-FPDAALKVFLTASAEARAERR 591 (661)
T ss_pred eEchhhhCcHHHHHHHHHHhCCHHHHHHHHHHH----HHHh-hCCCEEEECCCCccEE-CCCCCeEEEEECChhHHHHHH
Confidence 111111110000 0001 1224899998877522 234789999999999999999
Q ss_pred Hhc
Q 003460 647 VQR 649 (818)
Q Consensus 647 i~R 649 (818)
...
T Consensus 592 ~~~ 594 (661)
T PRK11860 592 YKQ 594 (661)
T ss_pred HHH
Confidence 875
No 220
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.04 E-value=1.7e-05 Score=76.01 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=74.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec------ccccCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV------GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~------~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~ 135 (818)
.+-|.|+|-+|+||||+|.+||+.+|...|.+.++.+ ++++...---+|-+.+...|..+..+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg--------- 77 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEGG--------- 77 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcCC---------
Confidence 3558999999999999999999999999999988743 5555544456777788877775432211
Q ss_pred hhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccC
Q 003460 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIG 192 (818)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~ 192 (818)
.+|=--|.-+|- ...+|+++.+.+|...-..|.-.|...
T Consensus 78 ---------------~IVDyHgCd~Fp---erwfdlVvVLr~~~s~LY~RL~sRgY~ 116 (176)
T KOG3347|consen 78 ---------------NIVDYHGCDFFP---ERWFDLVVVLRTPNSVLYDRLKSRGYS 116 (176)
T ss_pred ---------------cEEeecccCccc---hhheeEEEEEecCchHHHHHHHHcCCC
Confidence 111112333322 256899999999999998888877643
No 221
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.02 E-value=5.8e-06 Score=79.59 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=33.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+|.+.|++||||||+|+.|+..++..+++.|++...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~ 36 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRR 36 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHH
Confidence 578899999999999999999999999999998764
No 222
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.02 E-value=2.3e-05 Score=81.86 Aligned_cols=58 Identities=9% Similarity=-0.025 Sum_probs=37.7
Q ss_pred CCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHhhchhhhhccCC-ccccCcEEEECC
Q 003460 169 LDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP-DLHHAQIRINNR 226 (818)
Q Consensus 169 ~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~~~p~~~~~Iep-~~~~ADiII~N~ 226 (818)
.|+.||++++++.+.+|...|..... ....++++.+...|.+++.+ ....+++++.|.
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~ 202 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW 202 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC
Confidence 59999999999999999877764322 22234445555666555433 344677777653
No 223
>PRK02496 adk adenylate kinase; Provisional
Probab=98.01 E-value=2.3e-05 Score=79.31 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=33.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.|.|.|++||||||+|+.|++.+|+.++++|+..+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~ 38 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQ 38 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHH
Confidence 477899999999999999999999999999998765
No 224
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.00 E-value=1.4e-05 Score=83.96 Aligned_cols=123 Identities=13% Similarity=0.182 Sum_probs=71.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceecccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDL 593 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~ 593 (818)
..|+-|.|.||+||||||+|+.|++.+|+.++|+|+.++.+.... .. + .+.+.. +.+|..+.-.....
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~---t~-----l---g~~i~~~~~~G~lvpd~iv~~ 72 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAK---TT-----I---GKEIQKVVTSGNLVPDNLVIA 72 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcC---Ch-----H---HHHHHHHHHcCCcCCHHHHHH
Confidence 456668899999999999999999999999999999998632111 00 0 111111 22232111111000
Q ss_pred cccccCCCcceeeecCCcEEEEEecccch---Hhhh--hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460 594 ETGARSGFKELEVSEDCGVIIFEGVYALH---PEIR--KSLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~--~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
...++.. .. ......-+|++|.---. ..+. ...|..++++.+.++.+.|...|..
T Consensus 73 lv~~~l~--~~-~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr~ 132 (229)
T PTZ00088 73 IVKDEIA--KV-TDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRRI 132 (229)
T ss_pred HHHHHHH--hh-ccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCcC
Confidence 0001100 00 01123568999953221 1121 2467899999999999999887753
No 225
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.99 E-value=5.9e-07 Score=96.95 Aligned_cols=170 Identities=18% Similarity=0.130 Sum_probs=85.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc--eecccccCCC-CCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~~~-~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (818)
+|+|+||+|||||++|..|++.++..+|+.|+ +|+++.-... |..-+.+.+..+|-+.....+ .+..-++......
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~-~~~v~~f~~~a~~ 79 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSE-SYSAADFQTLALN 79 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhh-eEcHHHHHHHHHH
Confidence 48999999999999999999999999999999 5887654322 221111111222221111111 0111111111111
Q ss_pred cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhccCCccccCc
Q 003460 141 GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQ 220 (818)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~Iep~~~~AD 220 (818)
....+......+|++.|..++-..+..-.... -..+.+. +..+.+.. .....+. .+++..+-+...|.
T Consensus 80 ~i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~--p~~~~~~--r~~l~~~~-~~~g~~~-------l~~~L~~~DP~~a~ 147 (287)
T TIGR00174 80 AIADITARGKIPLLVGGTGLYLKALLEGLSPT--PSADKLI--REQLEILA-EEQGWDF-------LYNELKKVDPVAAA 147 (287)
T ss_pred HHHHHHhCCCCEEEEcCcHHHHHHHHcCCCCC--CCCCHHH--HHHHHHHH-HHcCHHH-------HHHHHHhcCHHHHH
Confidence 11112233445789999999876554322211 0112222 22222111 1111111 22222223334455
Q ss_pred EEEECCCCCChhhhhhcccCccc-CCcccccccc
Q 003460 221 IRINNRFVSSFREAIYKLKCRSE-APGACSISAF 253 (818)
Q Consensus 221 iII~N~~~~~~~~~~~~l~~~~~-~l~~~~~~~~ 253 (818)
-|-.|| ++.++++.+. ..+|+..+.+
T Consensus 148 ~i~~nd-------~~Ri~RALEi~~~tG~~~s~~ 174 (287)
T TIGR00174 148 KIHPND-------TRRVQRALEVFYATGKPPSEL 174 (287)
T ss_pred hcCCcc-------HHHHHHHHHHHHHHCCChHHH
Confidence 566677 7888888877 5566665554
No 226
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.99 E-value=2.4e-05 Score=81.31 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=33.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.|.|.|++||||||+|+.|++.+|+.++|++|..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~ 37 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHH
Confidence 377899999999999999999999999999998774
No 227
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=2.6e-05 Score=74.95 Aligned_cols=104 Identities=22% Similarity=0.235 Sum_probs=60.9
Q ss_pred eCCCCCcHHHHHHHHHHHhCCeEEeccceecc-----cccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 003460 68 GGPSGSGKTSLAEKLASVIGCTLISMENYRVG-----VDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 68 ~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~-----~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~ 142 (818)
.|.+||||||++..||+.||+..|+.|+++.. +..+-....-|..-..+.+.+....
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~------------------ 62 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAAS------------------ 62 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHH------------------
Confidence 49999999999999999999999999999872 1111111222222222222211100
Q ss_pred cccccCCccEEEEEeccc--chhhhhcCC-CE-EEEEEcCHHHHHHHHHHhcc
Q 003460 143 KVIKGASSGVVIVDGTYA--LDARLRSLL-DI-RVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l--~~~~l~~~~-D~-~I~Vda~~e~~l~Rri~Rd~ 191 (818)
... ....+||+...+= ++..++.-+ ++ -||++.+.++.+.|...|..
T Consensus 63 -~~~-~~~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~g 113 (161)
T COG3265 63 -LAQ-KNKHVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKG 113 (161)
T ss_pred -hhc-CCCceEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhccc
Confidence 000 1111344433322 224555444 33 37999999999888888763
No 228
>PLN02840 tRNA dimethylallyltransferase
Probab=97.95 E-value=3.8e-06 Score=94.70 Aligned_cols=108 Identities=20% Similarity=0.237 Sum_probs=62.5
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCC-CCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~ 135 (818)
.....+|+|+||+||||||+|..|++.++..+|+.|++ |+++.... .|..-+.....++|-++..-.+. +...+|.
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~-ySv~~F~ 96 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDD-YSVGAFF 96 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCc-eeHHHHH
Confidence 34457899999999999999999999999999999994 77665432 22222222222222222221110 1111221
Q ss_pred hhccccccccccCCccEEEEEecccchhhhhc
Q 003460 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRS 167 (818)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~ 167 (818)
.........+.......|||.|.+++...+..
T Consensus 97 ~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~ 128 (421)
T PLN02840 97 DDARRATQDILNRGRVPIVAGGTGLYLRWYIY 128 (421)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccHHHHHHhc
Confidence 11111111222334457999999998865543
No 229
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.94 E-value=1.8e-05 Score=81.21 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (818)
.+.+|.|+|.+||||||+|+.|++.+|..++...|+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~ 37 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDY 37 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHH
Confidence 357899999999999999999999999865544443
No 230
>PLN02748 tRNA dimethylallyltransferase
Probab=97.94 E-value=3.2e-06 Score=96.77 Aligned_cols=108 Identities=25% Similarity=0.239 Sum_probs=65.2
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc--eecccccCCC-CCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~~~~-~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~ 135 (818)
.+...+|+|+||+||||||||..||..+++.+|++|. +|+++..... +..-+...+.++|-++..-.+ .+...+|.
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e-~ysv~~F~ 97 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSV-EFTAKDFR 97 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCC-cCcHHHHH
Confidence 3455689999999999999999999999999999997 5998765432 322232333333333322211 11122222
Q ss_pred hhccccccccccCCccEEEEEecccchhhhhc
Q 003460 136 QKNRIGSKVIKGASSGVVIVDGTYALDARLRS 167 (818)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~ 167 (818)
.........+.....-.|||.|..+|...+..
T Consensus 98 ~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~ 129 (468)
T PLN02748 98 DHAVPLIEEILSRNGLPVIVGGTNYYIQALVS 129 (468)
T ss_pred HHHHHHHHHHHhcCCCeEEEcChHHHHHHHHc
Confidence 21111111223344557999999998866553
No 231
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.94 E-value=1.6e-05 Score=77.85 Aligned_cols=36 Identities=33% Similarity=0.560 Sum_probs=29.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVG 99 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~ 99 (818)
+|.|+|.+||||||+|+.|+..+ | +.+++.|.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~ 41 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHG 41 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHh
Confidence 47899999999999999999988 5 455777777653
No 232
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.94 E-value=2.7e-05 Score=78.20 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCC
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGC 543 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~ 543 (818)
+|+|.||+||||||+++.|+..++.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 6889999999999999999986653
No 233
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.93 E-value=5.3e-05 Score=77.87 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=24.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
....+|+|.|++||||||+++.|+..++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3457899999999999999999998765
No 234
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=97.93 E-value=5.3e-05 Score=75.31 Aligned_cols=160 Identities=16% Similarity=0.222 Sum_probs=113.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec----ccc--------c-----CCCCCcccHHHHHHHH
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV----GVD--------E-----GNDLDSIDFDALVQNL 118 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~----~~~--------~-----~~~~~~~d~~~l~~~L 118 (818)
+..+|+|+|.||+|-||+...+.+.++ +.-|..|.|++ .++ . ...+++-|+..|.+.+
T Consensus 4 KhPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f 83 (289)
T COG3954 4 KHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTF 83 (289)
T ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHH
Confidence 457899999999999999999887664 45688899866 111 1 1347888999999888
Q ss_pred HhhhcCCccccccchh----------hhhccccccccccCCccEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHH
Q 003460 119 QDLTEGKDTLIPMFDY----------QQKNRIGSKVIKGASSGVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLI 184 (818)
Q Consensus 119 ~~l~~~~~i~~p~~d~----------~~~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~e~~l~ 184 (818)
...-....-....|-+ ..+...+++... .+.+++.-||..... -.+..++|+.|-+.-=.+..+.
T Consensus 84 ~eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~lp-e~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWI 162 (289)
T COG3954 84 IEYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPLP-EPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWI 162 (289)
T ss_pred HHhcccCCcchhhhhhchhhcCccCCCCCCCCCcccCC-CccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHH
Confidence 7664432222222222 222233343332 236789999986643 4677899999988877888888
Q ss_pred HHHHhccCCC-cCHHHHHHhh---chhhhhccCCccccCcE
Q 003460 185 SKVQYDIGDS-CSLDSLIDSI---FPLFRKHIEPDLHHAQI 221 (818)
Q Consensus 185 Rri~Rd~~~~-~s~e~~~~~~---~p~~~~~Iep~~~~ADi 221 (818)
.++.||...| .+.+.+++.+ ++.|-.||-|.-.+.|+
T Consensus 163 QK~~RDt~~RGhSrEAVmDsivRsMdDYinyItPQFSrThI 203 (289)
T COG3954 163 QKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHI 203 (289)
T ss_pred HHHHhcccccCccHHHHHHHHHHhhhhHHhhcCcccccccc
Confidence 8899998888 5777777754 78888888888777766
No 235
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.92 E-value=3e-05 Score=76.77 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=31.8
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
|.|.|++||||||+|+.|+..++..+++.|+|+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~ 35 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPA 35 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccCh
Confidence 46889999999999999999999999999999753
No 236
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.92 E-value=1.9e-05 Score=93.19 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=35.6
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (818)
+.+...|.+.|.+||||||+++.||+.||.+++|+|.+..
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie 42 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIE 42 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHH
Confidence 3445679999999999999999999999999999999754
No 237
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.92 E-value=5.1e-05 Score=77.27 Aligned_cols=58 Identities=10% Similarity=0.061 Sum_probs=37.5
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHhhchhhhhccCC-ccccCcEEEEC
Q 003460 168 LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEP-DLHHAQIRINN 225 (818)
Q Consensus 168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~~~p~~~~~Iep-~~~~ADiII~N 225 (818)
..|+.||++++++++++|...|..... ....+.++.+...|..++.. .+..+.+++.|
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid 183 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIID 183 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEE
Confidence 478999999999999999877764222 11234556667777776654 23345555443
No 238
>PRK14526 adenylate kinase; Provisional
Probab=97.92 E-value=4.3e-05 Score=79.32 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=66.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~~ 142 (818)
.|+|.|++||||||+|+.|++.+|..+++++++.+.......+ +.+.+..+ ..|.-+.-.........+..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~-------~g~~i~~~~~~g~lvpd~~~~~lv~~~l~- 73 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTP-------LGKEIKQIVENGQLVPDSITIKIVEDKIN- 73 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCCh-------hhHHHHHHHHcCccCChHHHHHHHHHHHh-
Confidence 3789999999999999999999999999999986632222111 11112221 12221110111111111111
Q ss_pred cccccCCccEEEEEecc-cch--hhhhcCC--CEEEEEEcCHHHHHHHHHHhc
Q 003460 143 KVIKGASSGVVIVDGTY-ALD--ARLRSLL--DIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~-l~~--~~l~~~~--D~~I~Vda~~e~~l~Rri~Rd 190 (818)
......-+|+||.- -.. ..+...+ +..++++++.++.+.|...|.
T Consensus 74 ---~~~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 123 (211)
T PRK14526 74 ---TIKNNDNFILDGFPRNINQAKALDKFLPNIKIINFLIDEELLIKRLSGRR 123 (211)
T ss_pred ---cccccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHCCC
Confidence 11123457889882 221 2232221 356788999999999988875
No 239
>PRK13948 shikimate kinase; Provisional
Probab=97.91 E-value=3.5e-05 Score=78.08 Aligned_cols=40 Identities=15% Similarity=0.334 Sum_probs=35.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
..+..|.+.|.+||||||+++.|++.+|..++++|.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~ 47 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIER 47 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHH
Confidence 3567788999999999999999999999999999976543
No 240
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.90 E-value=2.3e-05 Score=76.63 Aligned_cols=111 Identities=22% Similarity=0.155 Sum_probs=64.2
Q ss_pred EeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhcccccccc
Q 003460 67 IGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGSKVI 145 (818)
Q Consensus 67 I~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~~~~ 145 (818)
|.||+||||||+|+.|++.+|..+|+++++.+....... .+.+.+.. +..|+.+.-.........+...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s-------~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~--- 70 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDS-------ELGKQIQEYLDNGELVPDELVIELLKERLEQ--- 70 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTS-------HHHHHHHHHHHTTSS--HHHHHHHHHHHHHS---
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhh-------HHHHHHHHHHHhhccchHHHHHHHHHHHHhh---
Confidence 689999999999999999999999999998664322211 11122222 3344433322222222222211
Q ss_pred ccCCccEEEEEecccch------hh----hhcCCCEEEEEEcCHHHHHHHHHH
Q 003460 146 KGASSGVVIVDGTYALD------AR----LRSLLDIRVAVVGGVHFSLISKVQ 188 (818)
Q Consensus 146 ~~~~~~vVIvEG~~l~~------~~----l~~~~D~~I~Vda~~e~~l~Rri~ 188 (818)
.....-+|+||.=--. .. .....+.+|+++++.+....|...
T Consensus 71 -~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 71 -PPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp -GGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred -hcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 1334678999973322 11 223457999999999987777554
No 241
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.90 E-value=0.00014 Score=74.03 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=24.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
.++|+|.|++||||||+++.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999884
No 242
>PRK13975 thymidylate kinase; Provisional
Probab=97.86 E-value=0.00015 Score=73.94 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=24.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGC 88 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~ 88 (818)
.+|+|.|+.||||||+++.|++.++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999999985
No 243
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.84 E-value=5.1e-05 Score=76.27 Aligned_cols=37 Identities=22% Similarity=0.455 Sum_probs=30.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCc--ccccccccch
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKS 554 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~--vis~Ddfy~~ 554 (818)
.+|.++|++||||||+|+.|++.++.. .++.|+|+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 378899999999999999999988644 4578888654
No 244
>PRK13808 adenylate kinase; Provisional
Probab=97.83 E-value=5.7e-05 Score=83.07 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=65.8
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceeccccccccccc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~~~~r 598 (818)
|.|.||+||||||+|..|++.+|+.+||+||..+.+-.. ..+. ...+.. +..|..+.--.......++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~----~s~~-------g~~~~~~~~~G~lVPdeiv~~li~e~ 71 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAA----GTPV-------GLKAKDIMASGGLVPDEVVVGIISDR 71 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhc----CChh-------hHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 567999999999999999999999999999998752111 1110 001111 1222221100000000011
Q ss_pred CCCcceeeecCCcEEEEEecccchHh---h---hh----cCCEEEEEEcChhHHHHHHHhc
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALHPE---I---RK----SLDLWIAVVGGVHSHLISRVQR 649 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~~~---l---~~----~~D~~I~v~~~~d~rl~Rri~R 649 (818)
.. ......-+|+||.---..+ + .. ..|+.|+++++.++.+.|...|
T Consensus 72 l~-----~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R 127 (333)
T PRK13808 72 IE-----QPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETR 127 (333)
T ss_pred Hh-----cccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcC
Confidence 10 0011234788985533211 1 11 4799999999999999998877
No 245
>PLN02674 adenylate kinase
Probab=97.82 E-value=0.00012 Score=77.36 Aligned_cols=121 Identities=11% Similarity=-0.028 Sum_probs=70.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~ 594 (818)
..+..|.|.||+||||||+|+.|++.+|+..||++|..+.+-... .+ +..+.-.-+.+|+.+.-......
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~----s~------~g~~i~~~~~~G~lvpd~iv~~l 98 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAK----TP------LGIKAKEAMDKGELVSDDLVVGI 98 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhcc----Ch------hhHHHHHHHHcCCccCHHHHHHH
Confidence 334567789999999999999999999999999999998632110 00 00111111223333211111110
Q ss_pred ccccCCCcceeeecCCcEEEEEecccch---Hhhh-------hcCCEEEEEEcChhHHHHHHHhcC
Q 003460 595 TGARSGFKELEVSEDCGVIIFEGVYALH---PEIR-------KSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
..++.. ......-+|++|.=--. ..+. -..|..|+++.+.+..+.|...|.
T Consensus 99 v~~~l~-----~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 99 IDEAMK-----KPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred HHHHHh-----CcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 011110 00112457888865432 1121 247899999999999999988774
No 246
>PLN02459 probable adenylate kinase
Probab=97.80 E-value=7.4e-05 Score=79.50 Aligned_cols=120 Identities=17% Similarity=0.111 Sum_probs=70.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRI 140 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~ 140 (818)
++.|.|.|++||||||+|+.|++.+|+.+|+++++.+.......+ +-..+.. +..|.-+.-.........+.
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~-------lg~~i~~~~~~G~lVPdeiv~~ll~~~l 101 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGP-------LGAQLKEIVNQGKLVPDEIIFSLLSKRL 101 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccch-------hHHHHHHHHHcCCccCHHHHHHHHHHHH
Confidence 356888999999999999999999999999999987642222111 1112222 22232221111111111111
Q ss_pred cccccccCCccEEEEEecccch---hhhhc--CCCEEEEEEcCHHHHHHHHHHhc
Q 003460 141 GSKVIKGASSGVVIVDGTYALD---ARLRS--LLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~---~~l~~--~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.. ........+|+||.=--. ..+.. ..|.+|+++++.+..+.|...|.
T Consensus 102 ~~--~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 102 EA--GEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred hc--ccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 00 000123568999873222 12222 36899999999999999988874
No 247
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.80 E-value=3.4e-05 Score=77.89 Aligned_cols=34 Identities=32% Similarity=0.467 Sum_probs=28.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN 95 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~ 95 (818)
|++|.++|.+||||||+|+.||+.| +..++|...
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 4689999999999999999999988 355555544
No 248
>PRK13947 shikimate kinase; Provisional
Probab=97.80 E-value=0.00011 Score=73.20 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=31.5
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
|.|.|++||||||+|+.|++.||..+++.|.+..
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~ 37 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIE 37 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhh
Confidence 7789999999999999999999999999998754
No 249
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.80 E-value=0.00018 Score=72.16 Aligned_cols=157 Identities=14% Similarity=0.121 Sum_probs=74.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeE-Eeccce--ecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh-
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTL-ISMENY--RVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ- 136 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~v-I~~D~~--~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~- 136 (818)
...++.|+||||+||||+.+.|-+..+..+ ||+--- +.+=.++-+.--.+.+.+.+. +..++-+.+..|....
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~---i~~~~fLE~a~~~gnyY 79 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEEL---IERDEFLEWAEYHGNYY 79 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHH---HhcCCcEEEEEEcCCcc
Confidence 457899999999999999999977653221 222110 111111111111111222222 2222222222222111
Q ss_pred hccc--cccccccCCccEEEEEecccchhhhhcCC-C-EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhcc
Q 003460 137 KNRI--GSKVIKGASSGVVIVDGTYALDARLRSLL-D-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI 212 (818)
Q Consensus 137 ~~~~--~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D-~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~I 212 (818)
+... ..........-++-+|..++.. +++.+ | ..||+..|.-..++||+.+...+ +.+.+.++....... +
T Consensus 80 GT~~~~ve~~~~~G~~vildId~qGa~q--vk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtd--s~e~I~~Rl~~a~~E-i 154 (191)
T COG0194 80 GTSREPVEQALAEGKDVILDIDVQGALQ--VKKKMPNAVSIFILPPSLEELERRLKGRGTD--SEEVIARRLENAKKE-I 154 (191)
T ss_pred cCcHHHHHHHHhcCCeEEEEEehHHHHH--HHHhCCCeEEEEEcCCCHHHHHHHHHccCCC--CHHHHHHHHHHHHHH-H
Confidence 1111 1112222333344455555543 33333 4 56999999999999988876443 333333332222111 1
Q ss_pred CCccccCcEEEECC
Q 003460 213 EPDLHHAQIRINNR 226 (818)
Q Consensus 213 ep~~~~ADiII~N~ 226 (818)
+ .....|.+|.|+
T Consensus 155 ~-~~~~fdyvivNd 167 (191)
T COG0194 155 S-HADEFDYVIVND 167 (191)
T ss_pred H-HHHhCCEEEECc
Confidence 1 123478999998
No 250
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=3.8e-05 Score=82.56 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=73.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCCC-CCcccHHHHHHHHHhhhcC-Cccccccchhhh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGND-LDSIDFDALVQNLQDLTEG-KDTLIPMFDYQQ 136 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~~-~~~~d~~~l~~~L~~l~~~-~~i~~p~~d~~~ 136 (818)
+-++|+|+|++|||||-||--||.+++..+|+.|.+ |++++-... ....+...+.++|.....- .+.....| ..
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F--~~ 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEF--ED 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHH--HH
Confidence 457999999999999999999999999999999995 887643211 1111111222232221111 11111111 11
Q ss_pred hccccccccccCCccEEEEEecccchhhhhcC---------------------CC-EEEEEEcCHHHHHHHHHHh
Q 003460 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSL---------------------LD-IRVAVVGGVHFSLISKVQY 189 (818)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~---------------------~D-~~I~Vda~~e~~l~Rri~R 189 (818)
........+.....-.+|+.|...+-..+..- +| +.+||+++..+-..|.-+|
T Consensus 84 ~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~R 158 (348)
T KOG1384|consen 84 DASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKR 158 (348)
T ss_pred HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHH
Confidence 11111112233334457778877766433322 33 6789999998877776555
No 251
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.78 E-value=7.3e-05 Score=75.08 Aligned_cols=151 Identities=19% Similarity=0.117 Sum_probs=74.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCC--eEEeccceecccccC--CCCCcc-------cHHHH-HHHHHhhhcCCccccc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGC--TLISMENYRVGVDEG--NDLDSI-------DFDAL-VQNLQDLTEGKDTLIP 130 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~--~vI~~D~~~~~~~~~--~~~~~~-------d~~~l-~~~L~~l~~~~~i~~p 130 (818)
.+|.+.|+|.|||||+|+.|++.+.. ..++.|.|...+..+ .....+ +.... ...+..+..+
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAA------ 75 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHH------
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHH------
Confidence 47999999999999999999999964 568899986632211 001111 00111 1111111000
Q ss_pred cchhhhhccccccccccCCccEEEEEecccch----hhhhc---CCC-EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460 131 MFDYQQKNRIGSKVIKGASSGVVIVDGTYALD----ARLRS---LLD-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (818)
Q Consensus 131 ~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~----~~l~~---~~D-~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~ 202 (818)
+ ..-.....-||+|..+.-. +.+++ -++ +.|-|.||.++..+|-..|--...+ . .+
T Consensus 76 ---------i---aa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G-~---a~ 139 (174)
T PF07931_consen 76 ---------I---AAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG-L---AA 139 (174)
T ss_dssp ---------H---HHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT-H---HH
T ss_pred ---------H---HHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH-H---HH
Confidence 0 0001123357778766543 22322 233 5678899999877777777521112 1 11
Q ss_pred hhchhhhhccCCccccCcEEEECCCCCChhhhhhcccC
Q 003460 203 SIFPLFRKHIEPDLHHAQIRINNRFVSSFREAIYKLKC 240 (818)
Q Consensus 203 ~~~p~~~~~Iep~~~~ADiII~N~~~~~~~~~~~~l~~ 240 (818)
. +++. +.. -..-|+.|+.+-.+..+++.-+++.
T Consensus 140 ~---q~~~-Vh~-~~~YDleVDTs~~sp~ecA~~I~~~ 172 (174)
T PF07931_consen 140 W---QAEH-VHE-GGRYDLEVDTSATSPEECAREILAR 172 (174)
T ss_dssp H---HTTG-GGT-T---SEEEETTSS-HHHHHHHHHTT
T ss_pred H---HHhh-ccc-CCCCCEEEECCCCCHHHHHHHHHHH
Confidence 1 1221 111 2357899998877777777666554
No 252
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.78 E-value=0.0001 Score=79.95 Aligned_cols=39 Identities=33% Similarity=0.515 Sum_probs=35.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCe-EEeccceec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRV 98 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~-vI~~D~~~~ 98 (818)
+.|++|.|+|++||||||+|..||..||.. +|++|.+..
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re 129 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIRE 129 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHH
Confidence 467999999999999999999999999986 899999864
No 253
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.78 E-value=0.00011 Score=75.52 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=32.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.+.+|.|+|.+||||||+|+.|+..+|..++..-|+.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~ 40 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLRE 40 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHH
Confidence 467999999999999999999999999876666666554
No 254
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.77 E-value=9.9e-05 Score=73.48 Aligned_cols=125 Identities=21% Similarity=0.177 Sum_probs=77.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 593 (818)
.+.|.||.|.|++||||-|.|.++++.+|...||++|..+.+.... ++--..+ .-..+++|.-+..-....
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~------gse~g~~---I~~~i~~G~iVP~ei~~~ 75 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA------GSERGAL---IKEIIKNGDLVPVEITLS 75 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc------cChHHHH---HHHHHHcCCcCcHHHHHH
Confidence 3568899999999999999999999999999999999998643221 1111111 122334454432222111
Q ss_pred cccccCCCcceeeecCCcEEEEEecccc-------hHhhhhcCCEEEEEEcChhHHHHHHHhcCcc
Q 003460 594 ETGARSGFKELEVSEDCGVIIFEGVYAL-------HPEIRKSLDLWIAVVGGVHSHLISRVQRDKS 652 (818)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~-------~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~ 652 (818)
...+ .........-+++||.=-- +..+....++.+|++++.++.+.|.+.|+..
T Consensus 76 LL~~-----am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 76 LLEE-----AMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred HHHH-----HHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhccc
Confidence 1100 0000111122777875421 1223335689999999999999999999854
No 255
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.77 E-value=3.3e-05 Score=76.42 Aligned_cols=129 Identities=16% Similarity=0.115 Sum_probs=68.9
Q ss_pred CCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCC---cccHHHHHHHHHhhhcCCccccccchhhhhcccccccccc
Q 003460 71 SGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLD---SIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSKVIKG 147 (818)
Q Consensus 71 sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~---~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~ 147 (818)
+||||||+++.||+.||++++|+|.+........-.+ ..+.+.+.+. ..... .... .
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~------------------E~~~l-~~l~-~ 60 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFREL------------------ESEAL-RELL-K 60 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHH------------------HHHHH-HHHH-C
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHH------------------HHHHH-HHHh-c
Confidence 6999999999999999999999999854322110000 0011111110 00000 0011 1
Q ss_pred CCccEEEEE-ecccchhhhh---cCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHH------HHHHhhchhhhhccCCcc
Q 003460 148 ASSGVVIVD-GTYALDARLR---SLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLD------SLIDSIFPLFRKHIEPDL 216 (818)
Q Consensus 148 ~~~~vVIvE-G~~l~~~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e------~~~~~~~p~~~~~Iep~~ 216 (818)
.. ..||.- |..+..+..+ ...-.+|||+++.+...+|...++.... .... ....+..|.|++
T Consensus 61 ~~-~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~------ 133 (158)
T PF01202_consen 61 EN-NCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQ------ 133 (158)
T ss_dssp SS-SEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHH------
T ss_pred cC-cEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHh------
Confidence 11 345554 4444444333 2346899999999998888776664111 1111 122234566665
Q ss_pred ccCcEEEECCC
Q 003460 217 HHAQIRINNRF 227 (818)
Q Consensus 217 ~~ADiII~N~~ 227 (818)
.||++++.+.
T Consensus 134 -~a~~~v~~~~ 143 (158)
T PF01202_consen 134 -AADIVVDTDG 143 (158)
T ss_dssp -HSSEEEETSS
T ss_pred -cCeEEEeCCC
Confidence 6899998774
No 256
>PRK14529 adenylate kinase; Provisional
Probab=97.76 E-value=9.1e-05 Score=77.38 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=70.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~ 142 (818)
.|.|.|++||||||+|+.|++.+|...+++.++.+.....+.+ +.+.+.. +..|.-+.-.........+..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~-------lg~~i~~~i~~G~lvpdei~~~lv~~~l~- 73 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTE-------LGKKAKEYIDRGDLVPDDITIPMILETLK- 73 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCCh-------HHHHHHHHHhccCcchHHHHHHHHHHHHh-
Confidence 4888999999999999999999999999998887643322111 1112222 122322221111111111111
Q ss_pred cccccCCccEEEEEecccch---hhh-------hcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 143 KVIKGASSGVVIVDGTYALD---ARL-------RSLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~---~~l-------~~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
... ..-+|+||.=--. ..+ .-..|.+|+++++.++.+.|...|..
T Consensus 74 ---~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~ 128 (223)
T PRK14529 74 ---QDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRL 128 (223)
T ss_pred ---ccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcc
Confidence 111 4468999973222 111 12478999999999999998887753
No 257
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.74 E-value=0.00018 Score=72.56 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=32.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (818)
-+++|.|++||||||+++.|+..++...++.|+++.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~ 39 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHP 39 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCC
Confidence 368999999999999999999999998999998754
No 258
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.73 E-value=9e-05 Score=75.00 Aligned_cols=165 Identities=18% Similarity=0.140 Sum_probs=76.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC----CeEEeccceec-ccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENYRV-GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg----~~vI~~D~~~~-~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~ 136 (818)
+.+|.|+||+|||||||++.|.+.+. .++-++-.--+ +-.++.+.--.+.+.+.+.+ ..++-+.+..++...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~---~~~~fie~~~~~g~~ 78 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMI---KAGEFIEYGEYDGNY 78 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHH---HTTHEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhh---ccccEEEEeeecchh
Confidence 45788999999999999999988764 23333332211 11111111111222222222 223223332232211
Q ss_pred hccc---cccccccCCccEEEEEecccchhhhh--cCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhc
Q 003460 137 KNRI---GSKVIKGASSGVVIVDGTYALDARLR--SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKH 211 (818)
Q Consensus 137 ~~~~---~~~~~~~~~~~vVIvEG~~l~~~~l~--~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~ 211 (818)
+.-. ..... ....++|++.-.-.-..+. ...-+.|||..+....+++++.+... .+.+.+.++. ...++.
T Consensus 79 YGt~~~~i~~~~--~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~--~~~~~i~~r~-~~~~~~ 153 (183)
T PF00625_consen 79 YGTSKSAIDKVL--EEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD--ESEEEIEERL-ERAEKE 153 (183)
T ss_dssp EEEEHHHHHHHH--HTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH--CHHHHHHHHH-HHHHHH
T ss_pred hhhccchhhHhh--hcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhcccc--ccHHHHHHHH-HHHHHH
Confidence 1110 01111 2344566654432223333 33447899998887778877655321 1222333322 122221
Q ss_pred cCCccccCcEEEECCCCCChhhhhhcc
Q 003460 212 IEPDLHHAQIRINNRFVSSFREAIYKL 238 (818)
Q Consensus 212 Iep~~~~ADiII~N~~~~~~~~~~~~l 238 (818)
+..... .|.+|.|+ ++++....|
T Consensus 154 ~~~~~~-fd~vi~n~---~le~~~~~l 176 (183)
T PF00625_consen 154 FEHYNE-FDYVIVND---DLEEAVKEL 176 (183)
T ss_dssp HGGGGG-SSEEEECS---SHHHHHHHH
T ss_pred HhHhhc-CCEEEECc---CHHHHHHHH
Confidence 211112 89999987 455554444
No 259
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.73 E-value=0.00016 Score=69.57 Aligned_cols=106 Identities=15% Similarity=0.168 Sum_probs=66.5
Q ss_pred eCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCc-----ccccHHHHHHHHHHHhcCCceecccccccccc
Q 003460 523 GGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDF-----SSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (818)
Q Consensus 523 sG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p-----~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~ 597 (818)
.|.+||||||++..|++.||+..+..|+|+-+.+..++.-+.| ..--++.+...+..+..+..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~------------ 68 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNK------------ 68 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCC------------
Confidence 4899999999999999999999999999999876655544443 22223444444333222111
Q ss_pred cCCCcceeeecCCcEEEEEeccc--chHhhhhcC-C-EEEEEEcChhHHHHHHHhcCccc
Q 003460 598 RSGFKELEVSEDCGVIIFEGVYA--LHPEIRKSL-D-LWIAVVGGVHSHLISRVQRDKSR 653 (818)
Q Consensus 598 r~~~~~~~~~~~~~vvIvEG~~~--~~~~l~~~~-D-~~I~v~~~~d~rl~Rri~Rd~~~ 653 (818)
.+||.-..+= +...+|... + ..||++++.++-+.|...|...+
T Consensus 69 -------------~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHF 115 (161)
T COG3265 69 -------------HVVIACSALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHF 115 (161)
T ss_pred -------------ceEEecHHHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCC
Confidence 1222211111 113344444 2 46789999999999988886443
No 260
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.72 E-value=0.00011 Score=74.00 Aligned_cols=125 Identities=16% Similarity=0.143 Sum_probs=61.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCc--ccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc-
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCE--VVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET- 595 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~--vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~- 595 (818)
+|.|+|+|||||||+++.|+..++.. +.....++.. ....+-.+-...+.+.+. .....+.-..+..+-...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITR--PASAGGENHIALSTEEFD---HREDGGAFALSWQAHGLSY 77 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEccc--CCCCCCccccccCHHHHH---HHHHCCCEEEEEeecCccc
Confidence 68899999999999999999987532 1100111110 000000000011111111 222233222222221000
Q ss_pred cccCCCcceeeecCCcEEEEEecccchHhhhhcCC--EEEEEEcChhHHHHHHHhcC
Q 003460 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLD--LWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D--~~I~v~~~~d~rl~Rri~Rd 650 (818)
+... ...........+|++|.-...+.++..+. ..||++++.+....|...|.
T Consensus 78 g~~~--~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~ 132 (179)
T TIGR02322 78 GIPA--EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITASPDVLAQRLAARG 132 (179)
T ss_pred cChH--HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHHcC
Confidence 0000 00011123457888887655455544332 78899999999998888763
No 261
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.72 E-value=0.00018 Score=73.79 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=32.6
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccccccc
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYFK 553 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~Ddfy~ 553 (818)
...+|.+|+|+|++||||||+++.|+..+ +..+++.|++..
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~ 65 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH 65 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh
Confidence 34678999999999999999999999976 245566666543
No 262
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.00012 Score=76.02 Aligned_cols=41 Identities=37% Similarity=0.552 Sum_probs=35.9
Q ss_pred hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-eEEeccceec
Q 003460 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRV 98 (818)
Q Consensus 58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~-~vI~~D~~~~ 98 (818)
++..|.+|.|.|+||.||||+|..||..||+ .+|++|.+..
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE 126 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE 126 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence 4467899999999999999999999999997 5788888643
No 263
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.72 E-value=9.1e-05 Score=73.20 Aligned_cols=104 Identities=20% Similarity=0.304 Sum_probs=72.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCC---cccccHHHHHHHHHHHhcCCceecccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDD---FSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~---p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~ 595 (818)
.|+|+|.+|.||||+|+.|+ .+|..++++-+|.+....-. .++. ---.|.+.+...+..+..
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~-~~de~r~s~~vD~d~~~~~le~~~~------------- 66 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYT-EYDELRKSVIVDVDKLRKRLEELLR------------- 66 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCee-ccCCccceEEeeHHHHHHHHHHHhc-------------
Confidence 68999999999999999999 79999999888876522110 1111 223577777777666321
Q ss_pred cccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (818)
Q Consensus 596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (818)
..-.|+||.++- +.+.+|+.|.+.++++.-..|...| |++.+
T Consensus 67 --------------~~~~Ivd~H~~h---l~~~~dlVvVLR~~p~~L~~RLk~R-----Gy~~e 108 (180)
T COG1936 67 --------------EGSGIVDSHLSH---LLPDCDLVVVLRADPEVLYERLKGR-----GYSEE 108 (180)
T ss_pred --------------cCCeEeechhhh---cCCCCCEEEEEcCCHHHHHHHHHHc-----CCCHH
Confidence 134577776652 3347899999999998877777654 66654
No 264
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.71 E-value=5.2e-05 Score=93.04 Aligned_cols=39 Identities=31% Similarity=0.681 Sum_probs=36.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 555 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~ 555 (818)
.++|+|+||+||||||+|+.|+..|++.+++++.+|+.-
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 369999999999999999999999999999999999973
No 265
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.70 E-value=0.0003 Score=71.98 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=23.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
..+|+|.|++||||||+++.|++.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 266
>PLN02842 nucleotide kinase
Probab=97.68 E-value=0.00015 Score=83.61 Aligned_cols=114 Identities=16% Similarity=0.086 Sum_probs=64.5
Q ss_pred EeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhcccccccc
Q 003460 67 IGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGSKVI 145 (818)
Q Consensus 67 I~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~~~~~ 145 (818)
|.|++||||||+|+.|++.+|..+|++++..+.....+.+ +-+.+..+ ..|+.+.-..+.....++....
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~-------iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~-- 72 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTD-------IGKRAKEFMNSGRLVPDEIVIAMVTGRLSRE-- 72 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCH-------HHHHHHHHHhCCCCCcHHHHHHHHHHHHhCc--
Confidence 7899999999999999999999999999976532221111 11122222 2232111111111111111110
Q ss_pred ccCCccEEEEEecccch---hhh---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 146 KGASSGVVIVDGTYALD---ARL---RSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 146 ~~~~~~vVIvEG~~l~~---~~l---~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.....-+|+||.---. ..+ ....|++|+++++.+..+.|...|.
T Consensus 73 -~~~~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 73 -DAKEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred -cccCCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 0012236669952111 122 2346999999999999999977764
No 267
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.68 E-value=0.00027 Score=72.65 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
...+|+|.|||||||||+++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 446799999999999999999998764
No 268
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.67 E-value=2.4e-05 Score=79.00 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=68.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceecccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLETGA 597 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~~~~ 597 (818)
.|.|.|+|||||||+|+.|++.++.+.+|.||+++...... + .+.+.... +.+|+-+.--.++.....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~-------t----~lg~~~k~~i~~g~lv~d~i~~~~v~~ 70 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER-------T----ELGEEIKKYIDKGELVPDEIVNGLVKE 70 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC-------C----hHHHHHHHHHHcCCccchHHHHHHHHH
Confidence 36789999999999999999999999999999998632111 1 01111111 233332222222222222
Q ss_pred cCCCcceeeecCCcEEEEEecccch-------Hhhh---hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460 598 RSGFKELEVSEDCGVIIFEGVYALH-------PEIR---KSLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 598 r~~~~~~~~~~~~~vvIvEG~~~~~-------~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
|... .....-+|++|.=-.- ..+. ...|..+.++.+.+.-+.|...|..
T Consensus 71 rl~~-----~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~ 129 (178)
T COG0563 71 RLDE-----ADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV 129 (178)
T ss_pred HHHh-----hcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence 2210 0111267888765432 1121 2468888888888888888887754
No 269
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.65 E-value=0.00028 Score=76.57 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=25.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI 91 (818)
..+.+|+|+|++||||||+++.|+. +|..++
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~-~g~~~~ 34 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALED-LGYYCV 34 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHH-cCCeEE
Confidence 3456899999999999999999964 577665
No 270
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.64 E-value=0.00024 Score=76.49 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=55.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~ 136 (818)
|.+|.|+|.+||||||+|+.|++.+. +.+++-|++...... ..++.........+...
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~--y~~~~~Ek~~R~~l~s~--------------- 63 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRND--YADSKKEKEARGSLKSA--------------- 63 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSS--S--GGGHHHHHHHHHHH---------------
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhh--hhchhhhHHHHHHHHHH---------------
Confidence 56899999999999999999999762 455665554411111 11222222222222210
Q ss_pred hccccccccccCCccEEEEEecccchh---------hhhcCCCEEEEEEcCHHHHHHHHHHhccCCCc
Q 003460 137 KNRIGSKVIKGASSGVVIVDGTYALDA---------RLRSLLDIRVAVVGGVHFSLISKVQYDIGDSC 195 (818)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~---------~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~ 195 (818)
+. + ......+||+|+.+-+.. .-...--..||++++.+.++.|-..|....+.
T Consensus 64 ---v~-r--~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~ 125 (270)
T PF08433_consen 64 ---VE-R--ALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERY 125 (270)
T ss_dssp ---HH-H--HHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S
T ss_pred ---HH-H--hhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCC
Confidence 00 0 012246999999985541 11122237799999999999999998755443
No 271
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.64 E-value=9e-05 Score=75.24 Aligned_cols=126 Identities=14% Similarity=0.038 Sum_probs=61.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
+|+|.||+||||||+++.|+..++..++..|.+......... .+.. .+.. .+....+..+.-...-.++-..+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~~~~~~~~~~~~g~~yg- 77 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGS-ENHI-ALSE---QEFFTRAGQNLFALSWHANGLYYG- 77 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhH-Hhhe-eEcH---HHHHHHHHCCchhhHHHHhCCccC-
Confidence 688999999999999999998777555444444332110000 0000 0111 111222222211111111100000
Q ss_pred CCCcceeeecCCcEEEEEecccchHhhhhcC---CEEEEEEcChhHHHHHHHhcC
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALHPEIRKSL---DLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~---D~~I~v~~~~d~rl~Rri~Rd 650 (818)
.+............||+.|--.....++..+ -..||++++.+....|...|+
T Consensus 78 ~~~~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~ 132 (186)
T PRK10078 78 VGIEIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRG 132 (186)
T ss_pred CcHHHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhC
Confidence 0000000112234566777765544444443 256889999999888887764
No 272
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.63 E-value=0.00021 Score=75.39 Aligned_cols=122 Identities=19% Similarity=0.317 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCcccHHHHHHHHHhhh
Q 003460 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT 122 (818)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~ 122 (818)
....+..+.++..+..+|||+|++|+|||||...|...+ | +.|+..|.=.. ...+.-. -|.-.+.+ +.
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp-~tGGAlL--GDRiRM~~----~~ 87 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP-FTGGALL--GDRIRMQE----LS 87 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG-CC---SS----GGGCHH----HH
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC-CCCCccc--ccHHHhcC----cC
Confidence 344455555666678999999999999999999998876 3 56777776321 0000000 01111111 11
Q ss_pred cCCcccccc---------chhhhhccccccccccCCccEEEEEecccch--hhhhcCCCEEEEEEcC
Q 003460 123 EGKDTLIPM---------FDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGG 178 (818)
Q Consensus 123 ~~~~i~~p~---------~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~ 178 (818)
....+++.. ....+.+ ..........++||+|-..+.+ ..+.+.+|..++|-.|
T Consensus 88 ~d~~vfIRS~atRG~lGGls~~t~~--~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~P 152 (266)
T PF03308_consen 88 RDPGVFIRSMATRGSLGGLSRATRD--AVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVP 152 (266)
T ss_dssp TSTTEEEEEE---SSHHHHHHHHHH--HHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEES
T ss_pred CCCCEEEeecCcCCCCCCccHhHHH--HHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecC
Confidence 111222211 0011111 1123344567899999888887 4677999999999887
No 273
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.61 E-value=9.3e-05 Score=80.73 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=33.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFK 553 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~ 553 (818)
+.+|.+.|++||||||+|+.|++.+ +..+++.|++..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~ 39 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQ 39 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHH
Confidence 4578889999999999999999999 899999998754
No 274
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=6.5e-05 Score=72.52 Aligned_cols=49 Identities=16% Similarity=0.352 Sum_probs=41.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCC
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYD 563 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d 563 (818)
.-+.+|-|.|++||||||+++.|.+.||+..+..|||+-+.+...+..+
T Consensus 10 ~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~G 58 (191)
T KOG3354|consen 10 PFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQG 58 (191)
T ss_pred CCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcC
Confidence 3466888999999999999999999999999999999998765544433
No 275
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.61 E-value=0.00031 Score=73.39 Aligned_cols=56 Identities=11% Similarity=0.025 Sum_probs=36.8
Q ss_pred CCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccc-cCCcccEEE
Q 003460 629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP-HLVHAHLKI 686 (818)
Q Consensus 629 ~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p-~~~~ADivI 686 (818)
.|+.||++++.+..+.|...|.... .......|+..+...|.++..+ +...+++++
T Consensus 143 Pd~~i~l~~~~~~~~~Ri~~R~~~~--e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~ 199 (219)
T cd02030 143 PHLVIYLDVPVPEVQKRIKKRGDPH--EMKVTSAYLQDIENAYKKTFLPEISEHSEVLQ 199 (219)
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCch--hhcccHHHHHHHHHHHHHHHHHhhccCCCEEE
Confidence 5899999999999999877664211 1111146777777888777654 334566654
No 276
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.61 E-value=0.00038 Score=70.58 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=72.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh----CCeEEeccceec-ccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRV-GVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L----g~~vI~~D~~~~-~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~ 136 (818)
+.+|.|.|||||||+|+++.|.+.. +..+.++-.-.+ +-.++.+..-...+.+.+. +..|.-+.+..+....
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~---i~~g~fve~~~~~g~~ 78 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDD---IKSGLFLEWGEYSGNY 78 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHH---HHcCCeEEEEEEcCcC
Confidence 3579999999999999999998764 222223222222 1111111111112222222 2223222222222111
Q ss_pred h-ccccccccccCCccEEEEEecccchhhhhc-CCC-EEEEEEcCHHHHHHHHHH-hccCCCcCHHHHHHhhchhhhhcc
Q 003460 137 K-NRIGSKVIKGASSGVVIVDGTYALDARLRS-LLD-IRVAVVGGVHFSLISKVQ-YDIGDSCSLDSLIDSIFPLFRKHI 212 (818)
Q Consensus 137 ~-~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~-~~D-~~I~Vda~~e~~l~Rri~-Rd~~~~~s~e~~~~~~~p~~~~~I 212 (818)
+ .....-........++|+++..-....+.. ..+ +.|||..+....+++|+. |.. .+.+.+.++....... .
T Consensus 79 YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~---~~~~~i~~rl~~a~~~-~ 154 (184)
T smart00072 79 YGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGT---ETAERIQKRLAAAQKE-A 154 (184)
T ss_pred cccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCC---CCHHHHHHHHHHHHHH-H
Confidence 1 110000001123567888877544444443 233 889998665555555544 421 2333333332211111 1
Q ss_pred CCccccCcEEEECC
Q 003460 213 EPDLHHAQIRINNR 226 (818)
Q Consensus 213 ep~~~~ADiII~N~ 226 (818)
. ..+..|.+|.|+
T Consensus 155 ~-~~~~fd~~I~n~ 167 (184)
T smart00072 155 Q-EYHLFDYVIVND 167 (184)
T ss_pred h-hhccCCEEEECc
Confidence 1 125689999998
No 277
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.60 E-value=0.00054 Score=69.35 Aligned_cols=30 Identities=33% Similarity=0.515 Sum_probs=25.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh---CCeEEe
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI---GCTLIS 92 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~ 92 (818)
++|+|.|+.||||||+++.|++.+ |..++.
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~ 33 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVL 33 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 379999999999999999999988 544443
No 278
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.60 E-value=0.00014 Score=73.51 Aligned_cols=158 Identities=20% Similarity=0.183 Sum_probs=71.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC----CCCcccHHHH-HHHHHhhhcCCc----ccccc---
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN----DLDSIDFDAL-VQNLQDLTEGKD----TLIPM--- 131 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~----~~~~~d~~~l-~~~L~~l~~~~~----i~~p~--- 131 (818)
||.|+|..|||++++|+.||+.||+.+++-+-+.....+.+ ..+.++-... ...+..+..+.. ...+.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence 69999999999999999999999999999855433222211 1222332222 122222211100 01111
Q ss_pred chhhhhccccccccccCCccEEEEEecccchhhhhcC-CCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHh-------
Q 003460 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSL-LDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDS------- 203 (818)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~-~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~------- 203 (818)
+.......+ .......-+|+.|..+.. -+++. -.+.|||.+|.+.|++|.+.|...........+..
T Consensus 81 ~~~~~~~~i----~~la~~~~~Vi~GR~a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~~~s~~~A~~~i~~~D~~R~~ 155 (179)
T PF13189_consen 81 IFRAQSEII----RELAAKGNCVIVGRCANY-ILRDIPNVLHVFIYAPLEFRVERIMEREGISEEEAEKLIKKEDKRRRA 155 (179)
T ss_dssp HHHHHHHHH----HHHHH---EEEESTTHHH-HTTT-TTEEEEEEEE-HHHHHHHHHHHHT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHhccCCEEEEecCHhh-hhCCCCCeEEEEEECCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 111111111 111112246777766643 12222 13899999999999999999974443233333321
Q ss_pred hchhhhhccCCccccCcEEEECC
Q 003460 204 IFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 204 ~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
+...+-..-......-|++|+.+
T Consensus 156 ~~~~~~~~~~~d~~~YDLvint~ 178 (179)
T PF13189_consen 156 YYKYYTGIDWGDPSNYDLVINTS 178 (179)
T ss_dssp HHHHH-SS-TTBGGG-SEEEEES
T ss_pred HHHHHhCCCCCCchhceEEEeCc
Confidence 11222121245567778988765
No 279
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.60 E-value=0.00033 Score=69.72 Aligned_cols=30 Identities=27% Similarity=0.416 Sum_probs=27.9
Q ss_pred eCCCCCcHHHHHHHHHHHhCCeEEecccee
Q 003460 68 GGPSGSGKTSLAEKLASVIGCTLISMENYR 97 (818)
Q Consensus 68 ~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~ 97 (818)
.|+|||||||+++.|++.+|...++.|.++
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~ 30 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLH 30 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCC
Confidence 599999999999999999999999999864
No 280
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.60 E-value=0.00034 Score=74.75 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcC
Q 003460 50 KSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEG 124 (818)
Q Consensus 50 ~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~ 124 (818)
..+..+.....+..+|||||++|+||||+...|...| | +.||..|.=.. ...+.-. -|.-.+.+ +...
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp-~TGGsiL--GDRiRM~~----~~~~ 111 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP-FTGGSIL--GDRIRMQR----LAVD 111 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC-CCCcccc--ccHhhHHh----hccC
Confidence 3344445566778899999999999999999998877 3 56777776311 0000000 01111111 1111
Q ss_pred Ccccc-ccchh----hhhc--cccccccccCCccEEEEEecccch--hhhhcCCCEEEEEEcC
Q 003460 125 KDTLI-PMFDY----QQKN--RIGSKVIKGASSGVVIVDGTYALD--ARLRSLLDIRVAVVGG 178 (818)
Q Consensus 125 ~~i~~-p~~d~----~~~~--~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D~~I~Vda~ 178 (818)
..+++ |.-+. .... +.....+.....++||||-..+.+ ..+.+.+|..++|..|
T Consensus 112 ~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~p 174 (323)
T COG1703 112 PGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIP 174 (323)
T ss_pred CCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecC
Confidence 11211 11011 0111 111123455678899999988887 5677999999999877
No 281
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.59 E-value=0.00012 Score=75.28 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=32.8
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccceeccc
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMENYRVGV 100 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~~~~~~ 100 (818)
...|.+|.+.|++||||||++..+...+ ++.+|+.|.|...+
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 4678999999999999999999999986 58889999986543
No 282
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.58 E-value=9.9e-05 Score=73.47 Aligned_cols=35 Identities=14% Similarity=0.323 Sum_probs=31.5
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
|.+.|+.||||||+.+.||+.|+...+++|...-.
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~ 39 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEK 39 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHH
Confidence 55689999999999999999999999999988654
No 283
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.56 E-value=0.00048 Score=69.48 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+++|.|++||||||+++.|+..++...++.|+++..
T Consensus 5 ~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~ 40 (176)
T PRK09825 5 SYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPA 40 (176)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCH
Confidence 688999999999999999999999888999988764
No 284
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.55 E-value=0.00026 Score=72.06 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=34.0
Q ss_pred cCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccc
Q 003460 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP 677 (818)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p 677 (818)
..|+.||++++.++++.|...|.... ......+|...+...|..++..
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~--e~~~~~~~~~~l~~~y~~~~~~ 171 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKRGRPE--EQGIPLDYLEDLHEAYEKWFLP 171 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCcHh--hhcCCHHHHHHHHHHHHHHHhh
Confidence 47899999999999998876664211 1111246777888888888765
No 285
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.55 E-value=0.00032 Score=84.63 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=64.8
Q ss_pred hcCCcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccc
Q 003460 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMF 132 (818)
Q Consensus 58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~ 132 (818)
...++.+|.++|.+||||||+|+.|++.| ++.+++.|.++..+.... .+..+.-...+..+..
T Consensus 456 ~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~---~~~~~~r~~~~~~l~~--------- 523 (632)
T PRK05506 456 KGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDL---GFSDADRVENIRRVAE--------- 523 (632)
T ss_pred hCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCC---CCCHHHHHHHHHHHHH---------
Confidence 34458999999999999999999999987 357899999987654321 1221111111111100
Q ss_pred hhhhhccccccccccCCccEEEEEecccch---hhhhcCC---C-EEEEEEcCHHHHHHH
Q 003460 133 DYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLL---D-IRVAVVGGVHFSLIS 185 (818)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~---D-~~I~Vda~~e~~l~R 185 (818)
. .........+||++...... ..++.++ . ..+|++++.+.+.+|
T Consensus 524 -------~--a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R 574 (632)
T PRK05506 524 -------V--ARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEAR 574 (632)
T ss_pred -------H--HHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhh
Confidence 0 00001223467777765543 3333332 3 679999999988776
No 286
>PLN02459 probable adenylate kinase
Probab=97.55 E-value=0.00035 Score=74.42 Aligned_cols=122 Identities=15% Similarity=0.084 Sum_probs=69.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~ 595 (818)
+++.|.|.||+||||||+|+.|++.+|...+|+++..+.+-... .+ +..+.=.-+.+|+-+.--......
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~----t~------lg~~i~~~~~~G~lVPdeiv~~ll 97 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSS----GP------LGAQLKEIVNQGKLVPDEIIFSLL 97 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhcc----ch------hHHHHHHHHHcCCccCHHHHHHHH
Confidence 44567778999999999999999999999999999997631110 00 001111112223222111100000
Q ss_pred cccCCCcceeeecCCcEEEEEecccchH---hhhh--cCCEEEEEEcChhHHHHHHHhcC
Q 003460 596 GARSGFKELEVSEDCGVIIFEGVYALHP---EIRK--SLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~~--~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
.++.. .. ......-+|++|.=--.. .+.. ..|..|+++.+.++-+.|...|.
T Consensus 98 ~~~l~--~~-~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 98 SKRLE--AG-EEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred HHHHh--cc-cccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 00000 00 001235578888654321 1222 36899999999999999988775
No 287
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.55 E-value=0.00019 Score=70.78 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=29.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~ 553 (818)
++.+|-|+|.+||||||+|+.|...| | +.+|+.|.+-.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~ 43 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH 43 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence 47899999999999999999999988 3 44666665543
No 288
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.54 E-value=9.9e-05 Score=81.65 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=30.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC------CeEEeccceec
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRV 98 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~ 98 (818)
++.++|++||||||+++.|+..|+ +.+++.|+++.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 367999999999999999998774 45899999985
No 289
>COG0645 Predicted kinase [General function prediction only]
Probab=97.50 E-value=0.00067 Score=67.01 Aligned_cols=111 Identities=20% Similarity=0.150 Sum_probs=70.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccccc-----CCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE-----GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~-----~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~ 137 (818)
.++.+.|.+||||||+|+.|++.+|+..|.+|.+.+.+-. +...+.+....-... |+.-..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~v--------------y~~l~~ 67 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAV--------------YDELLG 67 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHH--------------HHHHHH
Confidence 4678999999999999999999999999999998764433 222222222211110 110000
Q ss_pred ccccccccccCCccEEEEEecccch---hhhhcCCC------EEEEEEcCHHHHHHHHHHhcc
Q 003460 138 NRIGSKVIKGASSGVVIVDGTYALD---ARLRSLLD------IRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~D------~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
..........-||+|+.+.-. ...+.+++ +.|.+.++.++...|...|..
T Consensus 68 ----~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 68 ----RAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred ----HHHHHHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 011112234468999998876 22222222 347889999999999988875
No 290
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.50 E-value=0.00043 Score=80.87 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=64.4
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHH-hhhcCCccccccchhhhh
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQ-DLTEGKDTLIPMFDYQQK 137 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~-~l~~~~~i~~p~~d~~~~ 137 (818)
...+.+|.+.|.+||||||+|+.++...|+.+|+.|.+.. ...+..... .|..
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------~~~~~~~a~~~L~~-------------- 419 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------TQNCLTACERALDQ-------------- 419 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------HHHHHHHHHHHHhC--------------
Confidence 3567899999999999999999999988999999998621 111111111 1111
Q ss_pred ccccccccccCCccEEEEEecccchh---hhhcC-----CC-EEEEEEcCHHHHHHHHHHhcc
Q 003460 138 NRIGSKVIKGASSGVVIVDGTYALDA---RLRSL-----LD-IRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~-----~D-~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
..-||+|..++-.. .+..+ +. ..+|+++|.+++..|...|..
T Consensus 420 ------------G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 420 ------------GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred ------------CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 23467788877642 11111 12 347889999999888888865
No 291
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.49 E-value=0.00043 Score=82.05 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=47.0
Q ss_pred cccCCCCcchhhhhHHHHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCC------cccccccc
Q 003460 487 LVPMPDSYDFDRGLLLSVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGC------EVVSLESY 551 (818)
Q Consensus 487 ~~~~~~~~~~~e~~~~~~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~------~vis~Ddf 551 (818)
....|+++..-|..... .+....+.+++.+|.|+|.+||||||+|+.|+..++. .+++.|..
T Consensus 365 G~~pP~~f~rpeV~~iL---~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 365 GLEIPEWFSFPEVVAEL---RRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CCCCChhhcHHHHHHHH---HHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 36778888777664322 2222345667889999999999999999999999974 67777766
No 292
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.49 E-value=0.00044 Score=80.54 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=32.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (818)
.|+|+|++||||||+++.|++.+|+.++++|.+..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~ 36 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIE 36 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHH
Confidence 48999999999999999999999999999999754
No 293
>PHA00729 NTP-binding motif containing protein
Probab=97.49 E-value=0.00091 Score=69.76 Aligned_cols=106 Identities=22% Similarity=0.119 Sum_probs=65.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC--cccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC--EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~--~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 593 (818)
...-|.|+|++|+||||+|..|+..++. ..++.|+-..... ...--+|.+.+.+.|.....+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~------~~~~fid~~~Ll~~L~~a~~~~--------- 80 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYV------QNSYFFELPDALEKIQDAIDND--------- 80 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcC------CcEEEEEHHHHHHHHHHHHhcC---------
Confidence 4567899999999999999999998752 2333331111110 0112357777777776543321
Q ss_pred cccccCCCcceeeecCCcEEEEEe---------ccc--------chHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460 594 ETGARSGFKELEVSEDCGVIIFEG---------VYA--------LHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vvIvEG---------~~~--------~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
...+++|+|+ |+. +.+.++..++..++...+.+....+...|.
T Consensus 81 --------------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 81 --------------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred --------------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence 1125677777 451 345667778888888887777666655543
No 294
>PHA00729 NTP-binding motif containing protein
Probab=97.48 E-value=0.00049 Score=71.74 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=66.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC--eEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC--TLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQK 137 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~--~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~ 137 (818)
.+...|+|+|++|+||||+|..|+..++. ..++.| +..+......--++.+.+.+.|.....+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~--~~~~d~~~~~~fid~~~Ll~~L~~a~~~~------------ 80 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTK--DDAWQYVQNSYFFELPDALEKIQDAIDND------------ 80 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccch--hhHHhcCCcEEEEEHHHHHHHHHHHHhcC------------
Confidence 34567999999999999999999998762 233333 22222222223456666666665432221
Q ss_pred ccccccccccCCccEEEEEecc-----------------cchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 138 NRIGSKVIKGASSGVVIVDGTY-----------------ALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 138 ~~~~~~~~~~~~~~vVIvEG~~-----------------l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
...+++|+|+.. .+.+.++..+++.++..++.+....+...|.
T Consensus 81 ----------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg 140 (226)
T PHA00729 81 ----------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKG 140 (226)
T ss_pred ----------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCC
Confidence 012356777621 1234566678999999998888777766654
No 295
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.48 E-value=0.00022 Score=75.90 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=21.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l 541 (818)
+|.++|++||||||+|+.|++.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999987
No 296
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.47 E-value=0.0006 Score=70.51 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.3
Q ss_pred hcCCcEEEEEeCCCCCcHHHHHHHHHHH
Q 003460 58 KKGGIVTVGIGGPSGSGKTSLAEKLASV 85 (818)
Q Consensus 58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~ 85 (818)
+++.+.+|.|+||||||||||++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3566789999999999999999999763
No 297
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.46 E-value=0.0013 Score=66.93 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
..+|.|.|+.||||||+++.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999999885
No 298
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00055 Score=65.96 Aligned_cols=102 Identities=20% Similarity=0.360 Sum_probs=69.8
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhc-c--cCCCcccccHHHHHHHHHHHh-cCCceecccccccc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKD-F--KYDDFSSLDLSLLSKNISDIR-NGRRTKVPIFDLET 595 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~-~--~~d~p~t~D~~ll~~~L~~L~-~g~~v~~P~yD~~~ 595 (818)
|.|+|-+|+||||+|.+|++.+|...|.+.|+.+..+.-. + .++.+ -+|-+.+...|..+. .|..|
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~-i~DEdkv~D~Le~~m~~Gg~I--------- 79 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCH-ILDEDKVLDELEPLMIEGGNI--------- 79 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCc-cccHHHHHHHHHHHHhcCCcE---------
Confidence 6689999999999999999999999999999988754321 1 12233 257777777776643 22221
Q ss_pred cccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCc
Q 003460 596 GARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
|=.-| |-++|+ ..||+.+.+.+|...-..|...|..
T Consensus 80 -----------------VDyHg-Cd~Fpe--rwfdlVvVLr~~~s~LY~RL~sRgY 115 (176)
T KOG3347|consen 80 -----------------VDYHG-CDFFPE--RWFDLVVVLRTPNSVLYDRLKSRGY 115 (176)
T ss_pred -----------------Eeecc-cCccch--hheeEEEEEecCchHHHHHHHHcCC
Confidence 11111 112332 3589999999999998888876653
No 299
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.44 E-value=0.0007 Score=68.63 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=64.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC----Ccccccccccchhhh--hcccCCCcccccHHHHHHHHHHHhcCCceecccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYFKSEQV--KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIF 591 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg----~~vis~Ddfy~~~~~--~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~y 591 (818)
.+|.|.|||||||+|+++.|.+... ..+.++-..-++.+. .++.| .+. .+.-..+..|+-++.-.|
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~f-----vs~---~ef~~~i~~g~fve~~~~ 74 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHF-----VSR---EEFEDDIKSGLFLEWGEY 74 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEE-----CCH---HHHHHHHHcCCeEEEEEE
Confidence 4677899999999999999988642 111111111111110 11111 111 222334455666665555
Q ss_pred cccccccCCCcce-eeecCCcEEEEEecccchHhhhhc-CC-EEEEEEcChhHHHHHHHh
Q 003460 592 DLETGARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS-LD-LWIAVVGGVHSHLISRVQ 648 (818)
Q Consensus 592 D~~~~~r~~~~~~-~~~~~~~vvIvEG~~~~~~~l~~~-~D-~~I~v~~~~d~rl~Rri~ 648 (818)
.-....-.- ... .......++|+++-.-+...+... .+ ..||+.++....+.+|+.
T Consensus 75 ~g~~YGt~~-~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~ 133 (184)
T smart00072 75 SGNYYGTSK-ETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLR 133 (184)
T ss_pred cCcCcccCH-HHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHH
Confidence 432211000 011 112346789999886665555543 34 789998777766666665
No 300
>PRK14526 adenylate kinase; Provisional
Probab=97.44 E-value=0.00056 Score=71.04 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=32.6
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
|+|.|++||||||+|+.|+..++..++|+++..+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~ 37 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRE 37 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHH
Confidence 67899999999999999999999999999999875
No 301
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00098 Score=66.90 Aligned_cols=124 Identities=13% Similarity=0.126 Sum_probs=65.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh-----hcccCCCcccccHHHHHHHHHHHhcCCceeccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV-----KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 590 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~-----~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~ 590 (818)
...++.|+||||+||||+++.|-+..+ ..+|.-.-=++... .+|.|- +. .++.+.+..++-+++..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l~~SVS~TTR~pR~gEv~G~dY~Fv-----s~---~EF~~~i~~~~fLE~a~ 73 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-LRFSVSATTRKPRPGEVDGVDYFFV-----TE---EEFEELIERDEFLEWAE 73 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-eEEEEEeccCCCCCCCcCCceeEeC-----CH---HHHHHHHhcCCcEEEEE
Confidence 356788999999999999999988653 22222111111111 122231 12 22333444555555554
Q ss_pred ccccccccCCCc--ce-eeecCCcEEEEEecccchHhhhhcC-C-EEEEEEcChhHHHHHHHhcCc
Q 003460 591 FDLETGARSGFK--EL-EVSEDCGVIIFEGVYALHPEIRKSL-D-LWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 591 yD~~~~~r~~~~--~~-~~~~~~~vvIvEG~~~~~~~l~~~~-D-~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
|.- ...+.. .. .......-||+|==.-+...+++.+ + ..||+.+|.-..|.+|+.+..
T Consensus 74 ~~g---nyYGT~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rg 136 (191)
T COG0194 74 YHG---NYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRG 136 (191)
T ss_pred EcC---CcccCcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccC
Confidence 433 111110 01 1111233444444333444455544 3 688999999999999987653
No 302
>PRK14529 adenylate kinase; Provisional
Probab=97.44 E-value=0.00062 Score=71.21 Aligned_cols=116 Identities=16% Similarity=0.032 Sum_probs=67.3
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccccC
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARS 599 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~ 599 (818)
|.|.||+||||||.|+.|++.++...+|..+..+.+-.. +.+ +..+.-.-+.+|..+.--.......++.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~----~t~------lg~~i~~~i~~G~lvpdei~~~lv~~~l 72 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGG----GTE------LGKKAKEYIDRGDLVPDDITIPMILETL 72 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccC----CCh------HHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 667999999999999999999999999999888752110 000 1111111122333221111111011111
Q ss_pred CCcceeeecCCcEEEEEecccchH---hhh-------hcCCEEEEEEcChhHHHHHHHhcCc
Q 003460 600 GFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 600 ~~~~~~~~~~~~vvIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
. ... ..-+|++|.=--.. .+. -..|..|+++++.+..+.|...|..
T Consensus 73 ~-----~~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~ 128 (223)
T PRK14529 73 K-----QDG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRRL 128 (223)
T ss_pred h-----ccC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCcc
Confidence 0 001 24478888654321 111 2378999999999999999888754
No 303
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.41 E-value=0.00026 Score=71.20 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=31.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC--Ccccccccccch
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKS 554 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg--~~vis~Ddfy~~ 554 (818)
.||.+.|+|.|||||+|+.|++.+. ...+++|.|...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 3789999999999999999999996 357889999873
No 304
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=97.41 E-value=0.00072 Score=72.42 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=69.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (818)
|.+|.|+|.|||||||..+.|.. +|..+|| . +-...+.+.+..+..+.. .. .
T Consensus 1 m~~vIiTGlSGaGKs~Al~~lED-~Gy~cvD--N-------------lP~~Ll~~l~~~~~~~~~-~~--------~--- 52 (284)
T PF03668_consen 1 MELVIITGLSGAGKSTALRALED-LGYYCVD--N-------------LPPSLLPQLIELLAQSNS-KI--------E--- 52 (284)
T ss_pred CeEEEEeCCCcCCHHHHHHHHHh-cCeeEEc--C-------------CcHHHHHHHHHHHHhcCC-CC--------c---
Confidence 46899999999999999999954 6665554 1 222333333332221110 00 0
Q ss_pred ccccccCCccEEEEEec---cc-----chhhhh-cCCC-EEEEEEcCHHHHHHHHHHhccCCC----c-CHHHHHHhhch
Q 003460 142 SKVIKGASSGVVIVDGT---YA-----LDARLR-SLLD-IRVAVVGGVHFSLISKVQYDIGDS----C-SLDSLIDSIFP 206 (818)
Q Consensus 142 ~~~~~~~~~~vVIvEG~---~l-----~~~~l~-~~~D-~~I~Vda~~e~~l~Rri~Rd~~~~----~-s~e~~~~~~~p 206 (818)
.-.+.+|.- +. ....+. ...+ -.+|++|+.++-++|.-.-....- . ..+. ..
T Consensus 53 --------~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~-----I~ 119 (284)
T PF03668_consen 53 --------KVAIVIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEA-----IE 119 (284)
T ss_pred --------eEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHH-----HH
Confidence 001222211 00 001222 2233 458999999987777644332211 1 2222 34
Q ss_pred hhhhccCCccccCcEEEECCCCC
Q 003460 207 LFRKHIEPDLHHAQIRINNRFVS 229 (818)
Q Consensus 207 ~~~~~Iep~~~~ADiII~N~~~~ 229 (818)
.+++.++|-+..||+||+.+..+
T Consensus 120 ~Er~~L~~lr~~Ad~vIDTs~l~ 142 (284)
T PF03668_consen 120 KERELLEPLRERADLVIDTSNLS 142 (284)
T ss_pred HHHHHHHHHHHhCCEEEECCCCC
Confidence 55667788899999999988543
No 305
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.40 E-value=0.00032 Score=79.90 Aligned_cols=39 Identities=41% Similarity=0.513 Sum_probs=35.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCe-EEeccceec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRV 98 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~-vI~~D~~~~ 98 (818)
.+|.+|.++|++||||||+|..||..+|+. +|++|.+..
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~ 292 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVRE 292 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence 458999999999999999999999999986 789999744
No 306
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.37 E-value=0.00043 Score=71.07 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=31.4
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---CCcccccccccc
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFK 553 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g~~vis~Ddfy~ 553 (818)
....|.+|.++|++||||||++..+...+ ++.+|+.|+|-.
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 34689999999999999999999999987 477899999844
No 307
>PRK13975 thymidylate kinase; Provisional
Probab=97.36 E-value=0.0011 Score=67.49 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=24.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGC 543 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~ 543 (818)
.+|.|.|+.||||||+++.|++.++.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999999984
No 308
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.35 E-value=0.00018 Score=77.94 Aligned_cols=39 Identities=33% Similarity=0.589 Sum_probs=35.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCc-cccccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYF 552 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~-vis~Ddfy 552 (818)
.+.|++|.|+|++||||||+|..|+..+|.. +++.|.+-
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~r 128 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIR 128 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence 3579999999999999999999999999876 78888775
No 309
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.34 E-value=0.00013 Score=73.76 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=57.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHH-HHHHHHHhcCCc----eecccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLL-SKNISDIRNGRR----TKVPIFDL 593 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll-~~~L~~L~~g~~----v~~P~yD~ 593 (818)
||.|++..|||++|+|+.|++.||..+++-+-+...........+....+|-... ...+..+..+.. ...+..+.
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence 7899999999999999999999998886542221111111111112222333222 222233222110 01111110
Q ss_pred cccccCCCcceeeecCCcEEEEEecccchHhhhhc-CCEEEEEEcChhHHHHHHHhcC
Q 003460 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKS-LDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~-~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
. ..... +.+......+-+|+.|.++.+ -+++. -.+.||+.+|.+.|..|.+.|.
T Consensus 81 ~-~~~~~-~~i~~la~~~~~Vi~GR~a~~-il~~~~~~l~V~i~A~~~~Rv~ri~~~~ 135 (179)
T PF13189_consen 81 I-FRAQS-EIIRELAAKGNCVIVGRCANY-ILRDIPNVLHVFIYAPLEFRVERIMERE 135 (179)
T ss_dssp H-HHHHH-HHHHHHHH---EEEESTTHHH-HTTT-TTEEEEEEEE-HHHHHHHHHHHH
T ss_pred H-HHHHH-HHHHHHhccCCEEEEecCHhh-hhCCCCCeEEEEEECCHHHHHHHHHHHc
Confidence 0 00000 001111113467888999865 12222 2389999999999999999885
No 310
>PLN02199 shikimate kinase
Probab=97.34 E-value=0.00077 Score=72.79 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=33.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
-|.++|.+||||||+++.|++.+|+.++++|.+...
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~ 139 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQ 139 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHH
Confidence 567899999999999999999999999999988765
No 311
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.32 E-value=0.00051 Score=67.33 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=26.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCc--cccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV---GCE--VVSLESYF 552 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l---g~~--vis~Ddfy 552 (818)
+|.|.|.+||||||+|+.|+..+ +.. +++.|.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 47789999999999999999988 533 44445443
No 312
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.30 E-value=0.0016 Score=65.90 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=31.7
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccccc
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 552 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy 552 (818)
....+.+|+|+|++||||||+++.|...+. +.+++.|++-
T Consensus 14 ~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 14 NGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 345678999999999999999999998872 3456666554
No 313
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.30 E-value=0.00016 Score=80.00 Aligned_cols=35 Identities=17% Similarity=0.369 Sum_probs=30.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhC------Ccccccccccch
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYFKS 554 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg------~~vis~Ddfy~~ 554 (818)
+.++|++||||||+++.|+..++ +.++++|||+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~ 42 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPE 42 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccc
Confidence 56799999999999999998775 459999999964
No 314
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.30 E-value=0.0002 Score=78.37 Aligned_cols=39 Identities=36% Similarity=0.609 Sum_probs=35.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccccccc--ccch
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd--fy~~ 554 (818)
.+.+|.|+||+||||||+|..|++.+++.+||.|+ +|+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~ 43 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRG 43 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeec
Confidence 35689999999999999999999999999999999 5765
No 315
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.28 E-value=0.00048 Score=81.42 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=33.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
...|.+.|.+||||||+++.|++.||..++++|++.-.
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~ 43 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIER 43 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHH
Confidence 34566789999999999999999999999999997654
No 316
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.26 E-value=0.00057 Score=66.84 Aligned_cols=112 Identities=21% Similarity=0.153 Sum_probs=62.6
Q ss_pred eeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccccCCC
Q 003460 522 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGF 601 (818)
Q Consensus 522 IsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~~~ 601 (818)
|.||+||||||+|+.|++.+|...||+++..+..-.. + + ++..+.-..+.+|+.+.-...-.....+..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~----~---s---~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~- 69 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKS----D---S---ELGKQIQEYLDNGELVPDELVIELLKERLE- 69 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHT----T---S---HHHHHHHHHHHTTSS--HHHHHHHHHHHHH-
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhh----h---h---HHHHHHHHHHHhhccchHHHHHHHHHHHHh-
Confidence 5799999999999999999999999999988753211 0 0 111112222344544322221111111110
Q ss_pred cceeeecCCcEEEEEecccch---Hhhh-------hcCCEEEEEEcChhHHHHHHHh
Q 003460 602 KELEVSEDCGVIIFEGVYALH---PEIR-------KSLDLWIAVVGGVHSHLISRVQ 648 (818)
Q Consensus 602 ~~~~~~~~~~vvIvEG~~~~~---~~l~-------~~~D~~I~v~~~~d~rl~Rri~ 648 (818)
......-+|++|.=--. ..+. ...+..|+++++.+....|...
T Consensus 70 ----~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 70 ----QPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp ----SGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred ----hhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 01223568888876432 1222 2347899999999888777655
No 317
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.23 E-value=0.0015 Score=64.85 Aligned_cols=41 Identities=20% Similarity=0.312 Sum_probs=32.9
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~ 553 (818)
+..++.+|=++|.|||||||+|.+|.+.| | +.+++.|+.-.
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 44578999999999999999999999987 4 44666665543
No 318
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.22 E-value=0.0018 Score=64.82 Aligned_cols=37 Identities=32% Similarity=0.370 Sum_probs=30.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 552 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy 552 (818)
+..+|+|+|++||||||+|+.|+..+. +.+++.|.+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 456899999999999999999999873 4567777664
No 319
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.22 E-value=0.00062 Score=68.91 Aligned_cols=125 Identities=18% Similarity=0.112 Sum_probs=64.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC----cccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGC----EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~----~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 593 (818)
.+|.|+||+||||||+++.|.+.++- .+-++-.--+ .++.+-.+ +.+-.-.+....+.+|+-++.-.|+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r---~~E~~g~~---y~fvs~~~f~~~~~~~~fie~~~~~g 76 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPR---PGEVDGVD---YHFVSKEEFERMIKAGEFIEYGEYDG 76 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GG---TTS-TTTS---EEE--HHHHHHHHHTTHEEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCc---ccccCCcc---eEEEeechhhhhhccccEEEEeeecc
Confidence 35667999999999999999987751 1111111111 11111000 11111122223345566676666653
Q ss_pred cccccCCCcce-eeecCCcEEEEEecccchHhhhhc--CCEEEEEEcChhHHHHHHHhc
Q 003460 594 ETGARSGFKEL-EVSEDCGVIIFEGVYALHPEIRKS--LDLWIAVVGGVHSHLISRVQR 649 (818)
Q Consensus 594 ~~~~r~~~~~~-~~~~~~~vvIvEG~~~~~~~l~~~--~D~~I~v~~~~d~rl~Rri~R 649 (818)
....-. .... .......++|++.-..+...++.. .-+.||+.++....+.+++.+
T Consensus 77 ~~YGt~-~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~ 134 (183)
T PF00625_consen 77 NYYGTS-KSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRR 134 (183)
T ss_dssp EEEEEE-HHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHT
T ss_pred hhhhhc-cchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhc
Confidence 321100 0011 122345677777654444455443 237899998888888888755
No 320
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.17 E-value=0.0004 Score=68.62 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=27.0
Q ss_pred CCccHHHHHHHHHHHhCCcccccccccch
Q 003460 526 SGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 526 sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+||||||+++.|+..||..++++|+++-.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~ 29 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEE 29 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHH
Confidence 69999999999999999999999998754
No 321
>COG4639 Predicted kinase [General function prediction only]
Probab=97.17 E-value=0.00082 Score=65.37 Aligned_cols=101 Identities=18% Similarity=0.275 Sum_probs=62.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc--cCCCCC-c---ccHHHHHHHHHh-hhcCCccccccchh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD--EGNDLD-S---IDFDALVQNLQD-LTEGKDTLIPMFDY 134 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~--~~~~~~-~---~d~~~l~~~L~~-l~~~~~i~~p~~d~ 134 (818)
..+|++.|.+||||||+|+.. .+.+.+++.|++...+. ...... . .-++.+.+.+.. +..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~----------- 68 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRR----------- 68 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHc-----------
Confidence 357999999999999999985 35799999999977441 111000 0 111222222222 222
Q ss_pred hhhccccccccccCCccEEEEEecccchh---------hhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 135 QQKNRIGSKVIKGASSGVVIVDGTYALDA---------RLRSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~~---------~l~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.+.-|+|...+-.+ .-..+.+..|+++.|...+..|-..|.
T Consensus 69 ---------------Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~ 118 (168)
T COG4639 69 ---------------GKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRE 118 (168)
T ss_pred ---------------CCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccc
Confidence 23456666654431 222455677999999999998865443
No 322
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.0013 Score=64.68 Aligned_cols=37 Identities=22% Similarity=0.299 Sum_probs=32.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccce
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENY 96 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~ 96 (818)
+++++|.|+|.+|+||||+.+.+.+.+ +..+++-.++
T Consensus 2 k~~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~ 39 (189)
T COG2019 2 KGRKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDL 39 (189)
T ss_pred CCceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHH
Confidence 347899999999999999999999988 7778887776
No 323
>PLN02842 nucleotide kinase
Probab=97.12 E-value=0.00092 Score=77.30 Aligned_cols=115 Identities=15% Similarity=0.101 Sum_probs=63.6
Q ss_pred eeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccccCCC
Q 003460 522 IGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGARSGF 601 (818)
Q Consensus 522 IsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r~~~ 601 (818)
|.|++||||||+|+.|++.++..++++++..+.+... ++---..+.+. +.+|+.+.-........++...
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~-------~T~iG~~Ire~---l~~G~lvPdeiv~~ll~drl~~ 71 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSA-------GTDIGKRAKEF---MNSGRLVPDEIVIAMVTGRLSR 71 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhcc-------CCHHHHHHHHH---HhCCCCCcHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999988753111 01001111111 1223221111111111111100
Q ss_pred cceeeecCCcEEEEEecccch---Hhhh---hcCCEEEEEEcChhHHHHHHHhcC
Q 003460 602 KELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 602 ~~~~~~~~~~vvIvEG~~~~~---~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
.. ... .-+|+||.---. ..+. ...|+.|+++.+.++.+.|...|.
T Consensus 72 --~~-~~~-~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvpdevlleRl~gR~ 122 (505)
T PLN02842 72 --ED-AKE-KGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVPDEILIDRCVGRR 122 (505)
T ss_pred --cc-ccC-CcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhccc
Confidence 00 011 225669842211 1222 236899999999999999987774
No 324
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.09 E-value=0.0032 Score=62.67 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=28.2
Q ss_pred eCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 523 GGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 523 sG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
.|+|||||||+++.|+..+|...++.|.++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~ 31 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHP 31 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCc
Confidence 4999999999999999999999999988764
No 325
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.0022 Score=61.83 Aligned_cols=51 Identities=29% Similarity=0.421 Sum_probs=39.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccccCCCCCccc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVDEGNDLDSID 110 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~~~~~~~~~d 110 (818)
.+-.+|-|+|.|||||||+|-+|.+.| | +.+++.|....++...-...+-|
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~d 84 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAED 84 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhh
Confidence 345789999999999999999999877 3 56789999988765433333333
No 326
>PRK13973 thymidylate kinase; Provisional
Probab=97.06 E-value=0.0036 Score=65.04 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=27.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh---CCeEEec
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI---GCTLISM 93 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~ 93 (818)
.+|+|-|+.||||||.++.|++.| |..++.+
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 689999999999999999999999 7777655
No 327
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.05 E-value=0.0019 Score=66.80 Aligned_cols=28 Identities=36% Similarity=0.630 Sum_probs=24.5
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHH
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANI 540 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~ 540 (818)
+.+.+.+|.|+|||||||||+++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4567889999999999999999999763
No 328
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.03 E-value=0.002 Score=70.04 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=22.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~ 543 (818)
...+|+|+|++||||||+++.|.. +|.
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~-~g~ 31 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED-LGY 31 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH-cCC
Confidence 345899999999999999999964 453
No 329
>PLN02840 tRNA dimethylallyltransferase
Probab=97.02 E-value=0.00055 Score=77.47 Aligned_cols=37 Identities=32% Similarity=0.546 Sum_probs=34.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf 551 (818)
....+|.|+||+||||||+|..|++.++..+||.|.+
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 4566899999999999999999999999999999985
No 330
>PLN02165 adenylate isopentenyltransferase
Probab=97.01 E-value=0.00055 Score=75.24 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=33.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf 551 (818)
+..+|+|.||+||||||||..|+..++..++++|..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 445899999999999999999999999999999987
No 331
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.01 E-value=0.0011 Score=77.47 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=34.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf 551 (818)
...|.+|.+.|++||||||+|+.++...|..+++.|.+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l 403 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL 403 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence 35788999999999999999999999889999999976
No 332
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.93 E-value=0.0034 Score=63.43 Aligned_cols=42 Identities=38% Similarity=0.660 Sum_probs=34.4
Q ss_pred cCCCC-EEEeeeCCCCccHHHHHHHHHHHh----CCcccccccccch
Q 003460 513 NKGLP-VIVGIGGPSGSGKTSLAHKMANIV----GCEVVSLESYFKS 554 (818)
Q Consensus 513 ~~~~p-~iIgIsG~sGSGKTTla~~L~~~l----g~~vis~Ddfy~~ 554 (818)
..++| +.|++.||+|||||||..++...| ...||.-|=|+..
T Consensus 8 ~~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~ 54 (202)
T COG0378 8 EKNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKE 54 (202)
T ss_pred HhcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechh
Confidence 44567 999999999999999998877666 5778888888755
No 333
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.91 E-value=0.001 Score=73.63 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=33.4
Q ss_pred HHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccc
Q 003460 511 LENKGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (818)
Q Consensus 511 ~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddf 551 (818)
....+++++|||+|++|||||||+..|...+. +.+++.|.-
T Consensus 50 ~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 50 LPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred hhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 33467899999999999999999999887762 567777764
No 334
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.91 E-value=0.0015 Score=70.36 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=53.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC-----CcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 593 (818)
+|.|+|.+||||||+|+.|++.+. +.+++-|++.... .. |.++ .....+...+.....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~--~~--y~~~--~~Ek~~R~~l~s~v~----------- 65 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDR--ND--YADS--KKEKEARGSLKSAVE----------- 65 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TT--SS--S--G--GGHHHHHHHHHHHHH-----------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccch--hh--hhch--hhhHHHHHHHHHHHH-----------
Confidence 577999999999999999999863 4456644444211 11 2222 222222222222000
Q ss_pred cccccCCCcceeeecCCcEEEEEecccch---Hh---hhhcC---CEEEEEEcChhHHHHHHHhcCc
Q 003460 594 ETGARSGFKELEVSEDCGVIIFEGVYALH---PE---IRKSL---DLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~---l~~~~---D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
.......+||+++.+-.- -+ +.... -..||++++.+.++.|...|..
T Consensus 66 -----------r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~ 121 (270)
T PF08433_consen 66 -----------RALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPE 121 (270)
T ss_dssp -----------HHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-
T ss_pred -----------HhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCC
Confidence 001224799999988432 11 11112 2689999999999999988763
No 335
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.90 E-value=0.00084 Score=70.85 Aligned_cols=45 Identities=24% Similarity=0.570 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh-----CCcccccc
Q 003460 505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLE 549 (818)
Q Consensus 505 ~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~D 549 (818)
..++.+....++..+|||+||+|+|||||...|...+ .+.|+..|
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVD 66 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVD 66 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEEC
Confidence 3445555567788999999999999999999999876 24466555
No 336
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.87 E-value=0.0017 Score=75.77 Aligned_cols=36 Identities=14% Similarity=0.404 Sum_probs=32.9
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.|.|+|++||||||+++.|++.+|+.++++|++...
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~ 37 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIER 37 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHH
Confidence 378999999999999999999999999999988643
No 337
>PRK13973 thymidylate kinase; Provisional
Probab=96.84 E-value=0.0057 Score=63.56 Aligned_cols=32 Identities=22% Similarity=0.403 Sum_probs=26.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh---CCccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSL 548 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l---g~~vis~ 548 (818)
..+|.|-|+.||||||.++.|++.| |..++.+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3678899999999999999999998 5555543
No 338
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.82 E-value=0.0013 Score=70.36 Aligned_cols=120 Identities=21% Similarity=0.275 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--CcccccccccchhhhhcccCCCcccc--cHHHHHH
Q 003460 503 SVQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFKSEQVKDFKYDDFSSL--DLSLLSK 575 (818)
Q Consensus 503 ~~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~~~~~~~~~~d~p~t~--D~~ll~~ 575 (818)
+.+++..+....+++.+|||+|++|+||||+..+|...| | +.||+.|==-.- .-+++ |.-.|.
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~---------TGGsiLGDRiRM~- 106 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF---------TGGSILGDRIRMQ- 106 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC---------CCccccccHhhHH-
Confidence 445666777788999999999999999999999999877 2 556666621100 00111 111111
Q ss_pred HHHHHhcCCceecccccccccccC---CC--cce-----eeecCCcEEEEEecccch--HhhhhcCCEEEEEEcCh
Q 003460 576 NISDIRNGRRTKVPIFDLETGARS---GF--KEL-----EVSEDCGVIIFEGVYALH--PEIRKSLDLWIAVVGGV 639 (818)
Q Consensus 576 ~L~~L~~g~~v~~P~yD~~~~~r~---~~--~~~-----~~~~~~~vvIvEG~~~~~--~~l~~~~D~~I~v~~~~ 639 (818)
.+..... .|-.+...|. +- ..+ ......|+||+|-.-++. -.+.++.|..+++..|.
T Consensus 107 ---~~~~~~~----vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg 175 (323)
T COG1703 107 ---RLAVDPG----VFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPG 175 (323)
T ss_pred ---hhccCCC----eEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCC
Confidence 1111111 1111111111 00 001 012367999999999986 56789999999997653
No 339
>COG4639 Predicted kinase [General function prediction only]
Probab=96.80 E-value=0.0017 Score=63.24 Aligned_cols=36 Identities=31% Similarity=0.428 Sum_probs=29.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+.+|.+.|.|||||||+|+.. ...+.++|+||+-..
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~ 37 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNYVLSLDDLRLL 37 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcceecHHHHHHH
Confidence 457889999999999999974 346889999999763
No 340
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.0018 Score=65.77 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
+|.++|++||||||+|+.|+..|.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 567899999999999999999883
No 341
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.79 E-value=0.0014 Score=61.56 Aligned_cols=32 Identities=38% Similarity=0.699 Sum_probs=27.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460 65 VGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (818)
Q Consensus 65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (818)
|.|.|++|+||||+++.+++.++.+++..+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccc
Confidence 67999999999999999999999887666553
No 342
>PLN02748 tRNA dimethylallyltransferase
Probab=96.77 E-value=0.001 Score=76.51 Aligned_cols=40 Identities=33% Similarity=0.567 Sum_probs=36.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccc--ccch
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd--fy~~ 554 (818)
+.+.+|.|+||+||||||||..|+..+++.+|+.|. +|+.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrg 61 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSG 61 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCC
Confidence 455689999999999999999999999999999996 6875
No 343
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.75 E-value=0.0021 Score=71.06 Aligned_cols=44 Identities=25% Similarity=0.528 Sum_probs=34.5
Q ss_pred HHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccce
Q 003460 53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY 96 (818)
Q Consensus 53 ~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~ 96 (818)
+.+.....++.+|||+|++|||||||+..|...+ | +.+|+.|.-
T Consensus 47 ~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~ 95 (332)
T PRK09435 47 DALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPS 95 (332)
T ss_pred HHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCC
Confidence 3333445678999999999999999999988766 3 567888873
No 344
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.72 E-value=0.00097 Score=72.26 Aligned_cols=36 Identities=33% Similarity=0.623 Sum_probs=33.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCccccccc--ccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd--fy~~ 554 (818)
+|.|+||+|||||++|..|++.++..+||+|+ +|+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~ 38 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKG 38 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeee
Confidence 47899999999999999999999999999998 5765
No 345
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.67 E-value=0.0014 Score=61.68 Aligned_cols=33 Identities=30% Similarity=0.596 Sum_probs=27.6
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy 552 (818)
|.|.||+|+||||+++.+++.++.+++.+|...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~ 33 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSE 33 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccc
Confidence 568999999999999999999997776655443
No 346
>COG3025 Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.0019 Score=72.09 Aligned_cols=118 Identities=14% Similarity=0.078 Sum_probs=85.5
Q ss_pred ccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec--cHH------------H
Q 003460 257 EAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR--MTL------------G 322 (818)
Q Consensus 257 ~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v--~~~------------~ 322 (818)
....++|||.|.+.++..+-.+ |||+.++++.+|.|-.=-+.+|+ -.|.|+++.+ ... .
T Consensus 34 ~~L~n~YyDTpd~~L~~~~~gL-----RIR~~~~~y~~TlKtaG~v~gGl--H~RpEyn~~L~~~~~~~~~~p~~~~p~~ 106 (432)
T COG3025 34 QQLANIYYDTPDNWLRRHDMGL-----RIRREGGQYEQTLKTAGGVVGGL--HQRPEYNVPLPEDTLDLAELPRDRWPAG 106 (432)
T ss_pred hhHhhhhcCCchHHHHhCCceE-----EEeccCCeEEEEEEecCcccccc--ccCccccccCCCCCcchhhChhhhcccc
Confidence 3456999999999999999999 99999999999999432223343 6799999999 111 1
Q ss_pred H---HHhcCCceeEEEEEEEEEEEe--C--CEEEEEeccC----CCCCCeEEEEec----CHHHHHHHHHHcCC
Q 003460 323 G---LLDLGYSVVASYKRASTYVVY--G--NLSVSFETID----TLDETFMVLRGT----NRKTVGAEALRMGI 381 (818)
Q Consensus 323 ~---L~~LGf~~~~~~~K~R~~~~~--~--~~~i~lD~v~----~lg~~fvEiE~~----~~~~i~~~~~~Lgl 381 (818)
+ ....-..|+++.+=.|+.|.. | .++|.||... +.-.|+-|||-. +...+.++++.|-.
T Consensus 107 ~~~~~~~~~L~PlFstdf~R~~w~v~~g~s~iEvALD~G~v~Age~q~picElElELKsG~~~aL~~la~~L~~ 180 (432)
T COG3025 107 IFPLDLGSELQPLFSTDFKREKWLVALGGSVIEVALDQGKVKAGERQEPICELELELKSGTPQALLALARTLAE 180 (432)
T ss_pred cCCcccccccccceeeeeeeeeeeeecCCeEEEEEecccccccCcccCchhheehhhhcCCHHHHHHHHHHHHH
Confidence 1 123345788999999999975 3 6788899874 555667677654 55666666666543
No 347
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=96.65 E-value=0.0018 Score=65.17 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=69.6
Q ss_pred ccceeeecCCCCCCCCCCCCCCeEEEEEeCceeEEEEecccccCCceeccccceEEe--hhhHHHHHhhhhHHHHHHhhh
Q 003460 729 NFIDMYLRLPGIPTNGQLTESDCIRVRICEGRFALLIREPLREGNFIIQPKVDFDIS--ISTVAGLLNLGYQAVAYIEAS 806 (818)
Q Consensus 729 ~y~~~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~l~~~g~~~~~~~~~~ 806 (818)
...+.|+-.|+-. ....+.|||+|+.+|++.|.+-.|..++.+.+++.++++|+ -.+...|.+|||+.++.++..
T Consensus 32 ~q~D~Yfd~p~~~---l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~iL~~LG~~~~~~v~K~ 108 (174)
T TIGR00318 32 FQHDIYFSNPCRD---FASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQILKKLGFKKVYEVIKK 108 (174)
T ss_pred ceEEEeecCCCcc---hhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHHHHHHCCCeEEEEEEEE
Confidence 4557776666422 23456799999999999999999999999999999999995 667778889999999888888
Q ss_pred heeeecceEEe
Q 003460 807 AFIYQDGKVRL 817 (818)
Q Consensus 807 ~~~~~~~~~~~ 817 (818)
..+|..+.++|
T Consensus 109 R~~~~l~~~~i 119 (174)
T TIGR00318 109 RRIYQTNELNV 119 (174)
T ss_pred EEEEEECCEEE
Confidence 88888776544
No 348
>PRK07933 thymidylate kinase; Validated
Probab=96.63 E-value=0.0045 Score=64.44 Aligned_cols=25 Identities=32% Similarity=0.609 Sum_probs=22.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
++|+|-|+.||||||+++.|++.|.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999999883
No 349
>PLN02772 guanylate kinase
Probab=96.63 E-value=0.013 Score=65.86 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=22.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
...+|.|+||||||||||.+.|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 45689999999999999999997754
No 350
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.58 E-value=0.011 Score=62.24 Aligned_cols=39 Identities=33% Similarity=0.463 Sum_probs=33.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC---eEEeccceec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC---TLISMENYRV 98 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~---~vI~~D~~~~ 98 (818)
....+|.+.|++|||||+||+.||+.||. +-+.+|+.|.
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyv 110 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYV 110 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceee
Confidence 45789999999999999999999999995 4467888754
No 351
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.57 E-value=0.0016 Score=66.97 Aligned_cols=38 Identities=29% Similarity=0.559 Sum_probs=32.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccch
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS 554 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~ 554 (818)
|.+|.+.||+|+||||.+.+|+..+. +.++++|.|--.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g 43 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG 43 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence 78999999999999999999998772 668899888654
No 352
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.57 E-value=0.0025 Score=65.33 Aligned_cols=40 Identities=35% Similarity=0.492 Sum_probs=30.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVD 101 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~ 101 (818)
|.++.|.||+|+|||.+|-.||+.+|++||+.|.+ |.++.
T Consensus 1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~ 42 (233)
T PF01745_consen 1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELS 42 (233)
T ss_dssp -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGT
T ss_pred CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccc
Confidence 56899999999999999999999999999999996 66543
No 353
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.52 E-value=0.006 Score=65.50 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=34.8
Q ss_pred EEEEEEcChhHHHHHHHhcCccccCcccchh-hHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 631 LWIAVVGGVHSHLISRVQRDKSRMGCFMSQN-DIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 631 ~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~-~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
..+|++++.++-+.|.-.-. |.+.+... ...+. ...+.+.++|-++.||+||+.+
T Consensus 84 ~ilFLdA~d~~LirRy~eTR---R~HPL~~~~~~le~-I~~Er~~L~~lr~~Ad~vIDTs 139 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSETR---RRHPLSSDGSLLEA-IEKERELLEPLRERADLVIDTS 139 (284)
T ss_pred EEEEEECChHHHHHHHHhcc---CCCCCCCCCCcHHH-HHHHHHHHHHHHHhCCEEEECC
Confidence 46799999988777764321 22223221 11222 3356677788899999999976
No 354
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.0078 Score=62.95 Aligned_cols=39 Identities=38% Similarity=0.630 Sum_probs=33.9
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCc-ccccccc
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESY 551 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~-vis~Ddf 551 (818)
+...|.||.|.|+||.||||+|..||..||.. +++.|..
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~I 124 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSI 124 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHH
Confidence 45679999999999999999999999999954 7777754
No 355
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.45 E-value=0.0054 Score=58.90 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=32.3
Q ss_pred HHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCe-EEeccce
Q 003460 53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENY 96 (818)
Q Consensus 53 ~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~-vI~~D~~ 96 (818)
+.+.+.-+...+|++.|..|||||||++.+++.+|+. .+++--|
T Consensus 13 ~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf 57 (133)
T TIGR00150 13 KAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTF 57 (133)
T ss_pred HHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCe
Confidence 3333444556689999999999999999999999853 3444443
No 356
>PLN02924 thymidylate kinase
Probab=96.45 E-value=0.018 Score=60.28 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
....+|+|.|+.||||||+++.|++.|.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~ 41 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLK 41 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999999885
No 357
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=96.45 E-value=0.023 Score=59.79 Aligned_cols=59 Identities=14% Similarity=0.007 Sum_probs=38.3
Q ss_pred EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhccCCccccCcEEEECCCCC
Q 003460 171 IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHAQIRINNRFVS 229 (818)
Q Consensus 171 ~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~~~~ 229 (818)
-.+|++|+.++-+.|.-.-....--+.......-...++++++|.+..||.||+.+..+
T Consensus 85 ~iLFLeA~~~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls 143 (286)
T COG1660 85 RVLFLEADDETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELS 143 (286)
T ss_pred eEEEEECchhHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccCC
Confidence 34799999999877775433222212222122334567778899999999999988533
No 358
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.44 E-value=0.0028 Score=65.15 Aligned_cols=38 Identities=42% Similarity=0.749 Sum_probs=32.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVG 99 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~ 99 (818)
|.+|++.||+|+||||.+.+||..+ | +.++++|.|+-+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~g 43 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIG 43 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCcc
Confidence 5789999999999999999999876 2 678999988653
No 359
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.43 E-value=0.0044 Score=59.54 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=26.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~ 543 (818)
.....+|.+.|+.|||||||++.+++.+|.
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 344568999999999999999999999984
No 360
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.43 E-value=0.0025 Score=63.04 Aligned_cols=32 Identities=34% Similarity=0.544 Sum_probs=23.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (818)
.|+|+|++|||||||++.|++. |+.++ ..+.+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar 32 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAR 32 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHH
Confidence 3899999999999999999998 98888 55544
No 361
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.40 E-value=0.0055 Score=58.05 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=26.8
Q ss_pred HhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (818)
Q Consensus 57 ~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~ 88 (818)
+.-++..+|.+.|.-|||||||++.+++.+|.
T Consensus 10 ~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 10 QILKPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp HHHSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred HhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34466689999999999999999999999974
No 362
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.36 E-value=0.069 Score=52.52 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=79.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCe-EEeccceecccccC-----CCCCcccHHHHHHHHHhhhcCC-cccc--ccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCT-LISMENYRVGVDEG-----NDLDSIDFDALVQNLQDLTEGK-DTLI--PMF 132 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~-vI~~D~~~~~~~~~-----~~~~~~d~~~l~~~L~~l~~~~-~i~~--p~~ 132 (818)
-.+|.+.|||||||-||...+...+... -++. .++-+... .+-++.+...+.+.-. .|. .+.+ -..
T Consensus 5 G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~f--vrRvITRpa~ag~EdH~avs~~eF~~~a~---~g~FAlsWqAhGL 79 (192)
T COG3709 5 GRLIAVVGPSGAGKDTLLDAARARLAGRPRLHF--VRRVITRPADAGGEDHDALSEAEFNTRAG---QGAFALSWQAHGL 79 (192)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHhccCCceEE--EEEEecccCCCCcccccccCHHHHHHHhh---cCceeEEehhcCc
Confidence 3679999999999999999998877321 0100 01111111 1223333332222111 110 0000 001
Q ss_pred hhhhhccccccccccCCccEEEEEecccchhhhhcCC-C-EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhh
Q 003460 133 DYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLL-D-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (818)
Q Consensus 133 d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D-~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~ 210 (818)
.+.....+. .......+||+.|.-+..+..+..+ + .++.|.+++++-.+|...|-. .+.+++..+.......
T Consensus 80 ~Ygip~eId---~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~p~VLaqRL~~RGR---Es~eeI~aRL~R~a~~ 153 (192)
T COG3709 80 SYGIPAEID---LWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITASPEVLAQRLAERGR---ESREEILARLARAARY 153 (192)
T ss_pred cccCchhHH---HHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecCHHHHHHHHHHhcc---CCHHHHHHHHHhhccc
Confidence 111111111 1123456899999999887666433 3 568899999999888888863 4566666655433332
Q ss_pred ccCCccccCcE-EEECCC
Q 003460 211 HIEPDLHHAQI-RINNRF 227 (818)
Q Consensus 211 ~Iep~~~~ADi-II~N~~ 227 (818)
- ..-.|+ .|+|+-
T Consensus 154 ~----~~~~dv~~idNsG 167 (192)
T COG3709 154 T----AGPGDVTTIDNSG 167 (192)
T ss_pred c----cCCCCeEEEcCCC
Confidence 1 123454 456653
No 363
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.36 E-value=0.0031 Score=63.37 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
..+.+++|+|++|||||||++.|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 4577999999999999999999998774
No 364
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.34 E-value=0.012 Score=71.10 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=33.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~ 553 (818)
..+|.+|.++|.+||||||+|+.|++.|+ +.+++.|++..
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~ 501 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRH 501 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhh
Confidence 34689999999999999999999999873 46788888765
No 365
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.32 E-value=0.022 Score=59.05 Aligned_cols=59 Identities=8% Similarity=-0.056 Sum_probs=36.7
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccC-CCcCHH--HHHHhhchhhhhccCCccccCcEEEECCC
Q 003460 168 LLDIRVAVVGGVHFSLISKVQYDIG-DSCSLD--SLIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 168 ~~D~~I~Vda~~e~~l~Rri~Rd~~-~~~s~e--~~~~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
.-|+++|+|+++++.++|...|... .+-..+ .+.+.+...|.+....... .=++|+++.
T Consensus 127 ~PD~ti~Ldv~~e~al~R~~~r~~~~~r~E~~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~~ 188 (208)
T COG0125 127 KPDLTLYLDVPPEVALERIRKRGELRDRFEKEDDEFLEKVREGYLELAAKFPE-RIIVIDASR 188 (208)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHhhCCC-eEEEEECCC
Confidence 4599999999999999999998755 442222 2455555566654422222 124455553
No 366
>PRK07933 thymidylate kinase; Validated
Probab=96.30 E-value=0.013 Score=60.94 Aligned_cols=49 Identities=8% Similarity=-0.017 Sum_probs=33.4
Q ss_pred cCCEEEEEEcChhHHHHHHHhcCccccC---cccch-hhHHHhhcchhhhhcc
Q 003460 628 SLDLWIAVVGGVHSHLISRVQRDKSRMG---CFMSQ-NDIMMTVFPMFQQHIE 676 (818)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg---~~~~~-~~~~~~v~p~~~~~I~ 676 (818)
.-|+.||++.+.+..+.|.-.|.....+ ...+. ..|...++..|..+..
T Consensus 132 ~PDl~i~Ldv~~e~a~~Ri~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~ 184 (213)
T PRK07933 132 VPDLQVLLDVPVELAAERARRRAAQDADRARDAYERDDGLQQRTGAVYAELAA 184 (213)
T ss_pred CCCEEEEecCCHHHHHHHHHhhccccCCcccccccccHHHHHHHHHHHHHHHH
Confidence 3699999999999999998777532111 11221 3677778888887754
No 367
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.29 E-value=0.006 Score=67.83 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=25.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.+..++++.||+||||||+|+.|+..++
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568899999999999999999999885
No 368
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.28 E-value=0.006 Score=67.86 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHh-cCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 44 GYYLLVKSIQELREK-KGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 44 ~~~~l~~~i~~~~~~-~~~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
....++..++..... ..+..+++|.||+||||||+|+.|+..++
T Consensus 59 ~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 59 AIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 444455555544432 34568899999999999999999999774
No 369
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.28 E-value=0.0032 Score=62.16 Aligned_cols=23 Identities=39% Similarity=0.804 Sum_probs=20.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l 541 (818)
.|+|+||||||||||-+.++...
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 58999999999999999999843
No 370
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.0037 Score=68.05 Aligned_cols=39 Identities=41% Similarity=0.730 Sum_probs=35.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cch
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf--y~~ 554 (818)
.+.+|.|.||+|||||-+|-.|++.+|..+||+|+. |+.
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~ 42 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRG 42 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCC
Confidence 367899999999999999999999999999999987 654
No 371
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.16 E-value=0.0049 Score=70.47 Aligned_cols=39 Identities=38% Similarity=0.500 Sum_probs=34.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc-ccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE-VVSLESYFK 553 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~-vis~Ddfy~ 553 (818)
.+|.+|.+.|++||||||+|..|+..+|.. +++.|.+-.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~ 292 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVRE 292 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHH
Confidence 469999999999999999999999999976 778887643
No 372
>PHA03132 thymidine kinase; Provisional
Probab=96.15 E-value=0.041 Score=64.93 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=25.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI 91 (818)
.++|.|-|+.||||||+++.|++.+|..++
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~lg~~Vi 286 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGILGDNVL 286 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence 678999999999999999999998854433
No 373
>PRK13976 thymidylate kinase; Provisional
Probab=96.15 E-value=0.022 Score=59.14 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
+.|+|-|.-||||||+++.|++.|.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~ 25 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLS 25 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999874
No 374
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.0056 Score=60.05 Aligned_cols=27 Identities=33% Similarity=0.417 Sum_probs=24.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
.++.|+|+|++|+||||++..+++.|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 457899999999999999999998873
No 375
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.11 E-value=0.0055 Score=61.57 Aligned_cols=28 Identities=36% Similarity=0.411 Sum_probs=24.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
..+.+|+|+|++|||||||++.|...|.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3567999999999999999999987773
No 376
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.09 E-value=0.0069 Score=59.84 Aligned_cols=23 Identities=48% Similarity=0.787 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.|+|+||||||||||.+.+|...
T Consensus 31 ~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhcc
Confidence 49999999999999999998743
No 377
>COG2954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.011 Score=56.16 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=68.9
Q ss_pred eeEeeeCCEEEEEEcceeecCCCcccCceeEEEEeccHHHHHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCC--CCC
Q 003460 283 IKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRMTLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTL--DET 360 (818)
Q Consensus 283 lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~~~~~L~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~l--g~~ 360 (818)
+|||..|.+.+||.||.. .+ -+|.|||-.+-+....+-|-+.+...++|+|.....+|.+-.+|...|- |=.
T Consensus 39 VRVRi~g~~A~LTiK~~~---~~---~~R~EfEY~iPl~DA~e~l~~~~g~~IEK~R~~v~~~G~~wEVDvF~G~n~gLv 112 (156)
T COG2954 39 VRVRIVGDRAYLTIKGGA---SG---LSRSEFEYEIPLADAEEMLTTACGRVIEKTRYPVRHGGFLWEVDVFLGDNAGLV 112 (156)
T ss_pred EEEEEecceEEEEEEccc---cc---eeeeeeeecccccCHHHHHHHhcchheeeeEeeeeeCCEEEEEeeecCcccceE
Confidence 499999999999999655 33 5899999999444444444445566899999999999999999999643 333
Q ss_pred eEEEEecCHHHHHHHHHHcCC
Q 003460 361 FMVLRGTNRKTVGAEALRMGI 381 (818)
Q Consensus 361 fvEiE~~~~~~i~~~~~~Lgl 381 (818)
-.|+|-.++.+-..+-.-||-
T Consensus 113 vAEvEl~~e~~~~~lP~WLGr 133 (156)
T COG2954 113 VAEVELPDENADFDLPDWLGR 133 (156)
T ss_pred EEEEEcCccccCCcCccccCc
Confidence 578887766555555555654
No 378
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.05 E-value=0.0041 Score=61.52 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=23.1
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
|+|+|++|||||||++.|++. |+.++ ..+.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~ 33 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV--PEYARE 33 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence 789999999999999999998 87766 555554
No 379
>PRK13974 thymidylate kinase; Provisional
Probab=95.99 E-value=0.032 Score=57.93 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=23.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
..+|++-|+.||||||.++.|++.+.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999874
No 380
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=95.99 E-value=0.0053 Score=66.97 Aligned_cols=37 Identities=27% Similarity=0.458 Sum_probs=32.6
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cch
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf--y~~ 554 (818)
+.+|.|+||+|||||.||-.|+.. +..+||.|.. |+.
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ 42 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKE 42 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCC
Confidence 348899999999999999999999 5699999987 665
No 381
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.018 Score=62.32 Aligned_cols=36 Identities=33% Similarity=0.524 Sum_probs=29.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (818)
..+|.+.||+|+||||||++||+.|.+. ..|.|+++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR--~~~~y~~~ 212 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR--TNDRYYKG 212 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee--ecCccccc
Confidence 4679999999999999999999988655 44556553
No 382
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.95 E-value=0.0095 Score=56.46 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=25.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.+..-+|.+.|+-|||||||++.++..+|
T Consensus 12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567899999999999999999999997
No 383
>PRK06761 hypothetical protein; Provisional
Probab=95.94 E-value=0.0098 Score=64.35 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=27.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd 550 (818)
.+|.|+|++||||||+++.|++.++...++.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~ 36 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVEL 36 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEE
Confidence 478999999999999999999998754444444
No 384
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.92 E-value=0.0087 Score=65.04 Aligned_cols=38 Identities=37% Similarity=0.628 Sum_probs=31.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh----C---CeEEeccceec
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI----G---CTLISMENYRV 98 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L----g---~~vI~~D~~~~ 98 (818)
++.+|+|+||+||||||++..|+..+ | +.+|++|.|+-
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 45799999999999999999998755 3 46789988653
No 385
>PRK10646 ADP-binding protein; Provisional
Probab=95.90 E-value=0.018 Score=56.57 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=28.4
Q ss_pred HHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460 54 ELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (818)
Q Consensus 54 ~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~ 88 (818)
.+.+.-+...+|.+.|.-|||||||++.+++.||+
T Consensus 20 ~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 20 RVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 33333445568999999999999999999999985
No 386
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.90 E-value=0.0073 Score=68.91 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=32.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy 552 (818)
++|.+|+++|++||||||++..|+..+ | +.++++|.|-
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 458999999999999999999999877 3 5678888665
No 387
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.88 E-value=0.0062 Score=56.64 Aligned_cols=26 Identities=50% Similarity=0.663 Sum_probs=23.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGC 88 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~ 88 (818)
..+.|.|++||||||+++.|+..++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999998753
No 388
>PRK06761 hypothetical protein; Provisional
Probab=95.88 E-value=0.0078 Score=65.12 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=28.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (818)
.+|.|+|++||||||+++.|++.++..-++.+.+
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~ 37 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELY 37 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEE
Confidence 5799999999999999999999987544444444
No 389
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.03 Score=58.03 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=80.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------hhc--ccC---CCccc------ccHHH-HH
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------VKD--FKY---DDFSS------LDLSL-LS 574 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~~~--~~~---d~p~t------~D~~l-l~ 574 (818)
..++|.|-|.-||||||.++.|++.|...-+ +.+.+.+ .+. .+. .+|.+ -|... +.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~---~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~ 78 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI---KVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLE 78 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999998842211 1112111 111 110 01111 11111 22
Q ss_pred HHHH-HHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhh---cCCEEEEEEcChhHHHHHHHhcC
Q 003460 575 KNIS-DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRK---SLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 575 ~~L~-~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~---~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
+.+. .+..|..|-..+|..+.--..+. ... +-++....++ .... .-|+++|++.+.+..++|...|.
T Consensus 79 ~~i~pal~~g~vVI~DRy~~Ss~AYQg~-----~~~---~~~~~~~~l~-~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~ 149 (208)
T COG0125 79 EVIKPALKEGKVVICDRYVDSSLAYQGG-----GRG---LDLDWVLALN-EFAPGGLKPDLTLYLDVPPEVALERIRKRG 149 (208)
T ss_pred HHHHHhhcCCCEEEECCcccHHHHhhhh-----ccC---CCHHHHHHHH-HhccCCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 2222 24456666666666664211100 000 0000000111 1111 45899999999999999998886
Q ss_pred ccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 651 KSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 651 ~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
.. .+ ..+. ..+...++..|..+...... .=++|+.+
T Consensus 150 ~~-~~-r~E~~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~ 187 (208)
T COG0125 150 EL-RD-RFEKEDDEFLEKVREGYLELAAKFPE-RIIVIDAS 187 (208)
T ss_pred Cc-cc-hhhhHHHHHHHHHHHHHHHHHhhCCC-eEEEEECC
Confidence 44 11 1222 23667777788777554322 22455554
No 390
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.85 E-value=0.0095 Score=55.00 Aligned_cols=33 Identities=36% Similarity=0.294 Sum_probs=25.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (818)
..+++|.|+|||||||+++.+. -|...+..|+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 4679999999999999999986 34444555554
No 391
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.85 E-value=0.0058 Score=59.00 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
+|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998764
No 392
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.84 E-value=0.0079 Score=60.36 Aligned_cols=27 Identities=33% Similarity=0.487 Sum_probs=23.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCe
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCT 89 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~ 89 (818)
.+|.|+|++||||||+|..|+..++..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCC
Confidence 368999999999999999999887643
No 393
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.83 E-value=0.0079 Score=61.94 Aligned_cols=36 Identities=33% Similarity=0.675 Sum_probs=27.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC----Cccccccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYF 552 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg----~~vis~Ddfy 552 (818)
|+.|+|+|++||||||+.+.+...+. +.++..|-++
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~ 40 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT 40 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC
Confidence 67899999999999999999988753 3445544444
No 394
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.82 E-value=0.0064 Score=56.53 Aligned_cols=25 Identities=48% Similarity=0.741 Sum_probs=22.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
..+.|.||+||||||+++.|+..++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4688999999999999999998875
No 395
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=95.82 E-value=0.02 Score=59.80 Aligned_cols=42 Identities=24% Similarity=0.475 Sum_probs=33.7
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceeccc
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGV 100 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~ 100 (818)
..++.+|...|.||.|||++|+.|+..| | +.+++.++|.+..
T Consensus 9 ~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~ 55 (222)
T PF01591_consen 9 HAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKL 55 (222)
T ss_dssp ----EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecc
Confidence 4568999999999999999999999876 3 6899999997743
No 396
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.80 E-value=0.021 Score=61.34 Aligned_cols=88 Identities=19% Similarity=0.373 Sum_probs=55.6
Q ss_pred hHHHHHHhhcCCccccccCCCCCC----------CCccccccCCcc-cccch-hhHHHHHHHHHHHHhcCCcEEEEEeCC
Q 003460 3 DGVVQRVFEEGGRDYFQQQPSTSS----------SSPSILQSLPVH-ASFDH-GYYLLVKSIQELREKKGGIVTVGIGGP 70 (818)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~p~~~~----------~~~~~~~~~~~~-~s~~~-~~~~l~~~i~~~~~~~~~~~iIgI~G~ 70 (818)
++--+++-+.+--||.+.-|...- ..+-.++..|.. .+|+. +...++..+. ....-+|.++||
T Consensus 59 ~~q~~~~~~~~E~Dfs~~~~~~~RfRvN~f~qr~~~a~vlR~Ip~~i~~~e~LglP~i~~~~~-----~~~~GLILVTGp 133 (353)
T COG2805 59 DDQRKILEENGELDFSYTLPGVARFRVNAFKQRGGYALVLRLIPSKIPTLEELGLPPIVRELA-----ESPRGLILVTGP 133 (353)
T ss_pred HHHHHHHHHhcceeEEEecCCcceEEeehhhhcCCcEEEEeccCccCCCHHHcCCCHHHHHHH-----hCCCceEEEeCC
Confidence 344455666666688777665421 233444555543 34666 4445554433 234468999999
Q ss_pred CCCcHHHHHHHHHHHhC----CeEEeccc
Q 003460 71 SGSGKTSLAEKLASVIG----CTLISMEN 95 (818)
Q Consensus 71 sGSGKSTlA~~La~~Lg----~~vI~~D~ 95 (818)
+||||||....+-..+| ..+|...|
T Consensus 134 TGSGKSTTlAamId~iN~~~~~HIlTIED 162 (353)
T COG2805 134 TGSGKSTTLAAMIDYINKHKAKHILTIED 162 (353)
T ss_pred CCCcHHHHHHHHHHHHhccCCcceEEecC
Confidence 99999998877777775 56777766
No 397
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.80 E-value=0.011 Score=64.90 Aligned_cols=45 Identities=29% Similarity=0.518 Sum_probs=34.9
Q ss_pred HHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEecccee
Q 003460 53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (818)
Q Consensus 53 ~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (818)
.........+.+|+|+|++||||||++..|+..+ | +.+|+.|...
T Consensus 25 ~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 25 DRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred HhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3333445678999999999999999999998866 3 5678888643
No 398
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.0079 Score=59.03 Aligned_cols=39 Identities=23% Similarity=0.349 Sum_probs=30.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.+.-|+|+|++|+||||++.++++.|.-.-+..-.||-+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 467799999999999999999999885333445556554
No 399
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.78 E-value=0.0091 Score=67.98 Aligned_cols=33 Identities=36% Similarity=0.336 Sum_probs=28.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~ 92 (818)
..+..|+|+|++|||||||++.|++.+|+..+.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 446789999999999999999999998876543
No 400
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.76 E-value=0.0069 Score=61.21 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
++|.|.|+.||||||+++.|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999988
No 401
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.76 E-value=0.0083 Score=65.17 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=31.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh----C---Ccccccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV----G---CEVVSLESYFK 553 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l----g---~~vis~Ddfy~ 553 (818)
++.+|++.||+||||||++..|+..+ | +.++++|.|..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRI 237 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccch
Confidence 46799999999999999999998765 2 45788888753
No 402
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.75 E-value=0.0062 Score=58.82 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=21.2
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
+|+|.||+||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 378899999999999999998764
No 403
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.74 E-value=0.0066 Score=62.38 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=19.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHH
Q 003460 518 VIVGIGGPSGSGKTSLAHKMAN 539 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~ 539 (818)
-+|.|.||||||||||.+.|..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4788899999999999998864
No 404
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.70 E-value=0.0093 Score=65.38 Aligned_cols=41 Identities=27% Similarity=0.453 Sum_probs=33.4
Q ss_pred HcCCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Cccccccccc
Q 003460 512 ENKGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (818)
Q Consensus 512 ~~~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy 552 (818)
...+.+.+|+|+|++|||||||+..|...+ | +.++++|..+
T Consensus 29 ~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 29 PYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 345678999999999999999999998866 2 5578888654
No 405
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.69 E-value=0.0079 Score=62.81 Aligned_cols=25 Identities=44% Similarity=0.514 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
--.|+|.||||||||||.+.++...
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3479999999999999999998644
No 406
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.69 E-value=0.007 Score=63.21 Aligned_cols=24 Identities=46% Similarity=0.666 Sum_probs=21.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.|+||||||||++.|+-..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Confidence 478999999999999999998644
No 407
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=95.69 E-value=0.028 Score=59.24 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=37.6
Q ss_pred EEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 631 LWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 631 ~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
..+|++++.++-+.|...- +|.+.+...+....-...+.++..|-+..||+||+..
T Consensus 85 ~iLFLeA~~~~Lv~RY~et---RR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs 140 (286)
T COG1660 85 RVLFLEADDETLVRRYSET---RRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTS 140 (286)
T ss_pred eEEEEECchhHHHHHHhhh---hhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecc
Confidence 3568999988877776432 2444444333233334467778899999999999865
No 408
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.68 E-value=0.0074 Score=63.00 Aligned_cols=24 Identities=42% Similarity=0.656 Sum_probs=21.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-+|+|.||||||||||.+.|....
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 479999999999999999887644
No 409
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.66 E-value=0.012 Score=63.68 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=32.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~ 98 (818)
.++.+|+++|++|+||||++..||..+ | +.++++|-|+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 456899999999999999999999876 3 56688887644
No 410
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.66 E-value=0.021 Score=59.66 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccce
Q 003460 47 LLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENY 96 (818)
Q Consensus 47 ~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~ 96 (818)
.++..+............+.|.|++|+|||++|+.++..+ .+.++++.+.
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3445555544433344568899999999999999998865 3556666554
No 411
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.65 E-value=0.011 Score=48.91 Aligned_cols=23 Identities=35% Similarity=0.707 Sum_probs=20.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l 541 (818)
+..|+|++||||||+..+++-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998765
No 412
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.64 E-value=0.0099 Score=60.75 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=23.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
..+|.|.|++||||||+++.|++.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 413
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.63 E-value=0.0076 Score=63.82 Aligned_cols=29 Identities=28% Similarity=0.613 Sum_probs=23.3
Q ss_pred EeCCCCCcHHHHHHHHHHHhC-----CeEEeccc
Q 003460 67 IGGPSGSGKTSLAEKLASVIG-----CTLISMEN 95 (818)
Q Consensus 67 I~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~ 95 (818)
|.||+||||||+++.+++.+. +.+|++|.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP 34 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP 34 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence 689999999999999999874 56888887
No 414
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.63 E-value=0.0084 Score=62.66 Aligned_cols=26 Identities=50% Similarity=0.574 Sum_probs=22.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
+--++||.|.||||||||++.|+...
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 34579999999999999999998744
No 415
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.61 E-value=0.01 Score=61.66 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=26.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeE-Eeccc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTL-ISMEN 95 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~v-I~~D~ 95 (818)
++|||+|.+||||||+|+.+.+ .|..+ +++.+
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d 33 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLAD 33 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhH
Confidence 3899999999999999999976 46666 77766
No 416
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.59 E-value=0.0089 Score=61.47 Aligned_cols=24 Identities=46% Similarity=0.482 Sum_probs=20.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLAS 84 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~ 84 (818)
+.-++.|+||||||||||.+.|..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 345799999999999999999954
No 417
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=95.57 E-value=0.053 Score=54.74 Aligned_cols=45 Identities=7% Similarity=-0.113 Sum_probs=30.1
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHhhchhhhhcc
Q 003460 168 LLDIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLFRKHI 212 (818)
Q Consensus 168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~~~p~~~~~I 212 (818)
.-|+.+|++++++++++|...|+.... ....+...+....|.+..
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~~~~~~~~~~~~~~~~~~~y~~l~ 164 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGEKDDEEEEDLEYLRRVREAYLELA 164 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSSTTTTTTHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 559999999999999999999987222 222334444445555533
No 418
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.56 E-value=0.014 Score=48.34 Aligned_cols=23 Identities=39% Similarity=0.733 Sum_probs=20.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L 86 (818)
+..|+|++||||||+..++.-.|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999997755
No 419
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.55 E-value=0.011 Score=59.23 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCE 544 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~ 544 (818)
+|.|+|++||||||+|..++..++..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC
Confidence 68899999999999999999887643
No 420
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.55 E-value=0.015 Score=66.43 Aligned_cols=39 Identities=33% Similarity=0.457 Sum_probs=33.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~ 98 (818)
.++.+|+++|++||||||++..||..+ | +.++++|.|..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 347899999999999999999999876 4 57789998754
No 421
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.54 E-value=0.009 Score=55.17 Aligned_cols=22 Identities=50% Similarity=0.505 Sum_probs=19.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHH
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMA 538 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~ 538 (818)
--+++|.|+||||||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3678999999999999999986
No 422
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.48 E-value=0.015 Score=55.81 Aligned_cols=26 Identities=46% Similarity=0.787 Sum_probs=23.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCeE
Q 003460 65 VGIGGPSGSGKTSLAEKLASVIGCTL 90 (818)
Q Consensus 65 IgI~G~sGSGKSTlA~~La~~Lg~~v 90 (818)
|.|.|++|+|||++++.+++.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 67999999999999999999997554
No 423
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=95.48 E-value=0.017 Score=59.56 Aligned_cols=35 Identities=37% Similarity=0.692 Sum_probs=27.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC----CeEEeccce
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENY 96 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg----~~vI~~D~~ 96 (818)
|+.|+|+|+.||||||+.+.+...+. +.++..|.+
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~ 39 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIY 39 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcC
Confidence 57899999999999999999987653 345555543
No 424
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.47 E-value=0.012 Score=65.31 Aligned_cols=36 Identities=28% Similarity=0.464 Sum_probs=32.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D 549 (818)
-+.|.++||-||+|+|||.+|+.++..+|+..|.++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 467999999999999999999999999998766554
No 425
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=95.47 E-value=0.033 Score=54.23 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=29.2
Q ss_pred HHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 53 QELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 53 ~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
+.+.+.-+..-+|.+.|.-|||||||++.+++.||
T Consensus 16 ~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 16 ERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred HHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence 33334456778999999999999999999999887
No 426
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.47 E-value=0.039 Score=64.79 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=28.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D 94 (818)
+.-+.+.||+|+|||++|+.++..++++++..+
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 455899999999999999999999887766543
No 427
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.46 E-value=0.013 Score=60.29 Aligned_cols=34 Identities=41% Similarity=0.613 Sum_probs=28.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf 551 (818)
.++.|.||+|+|||.+|-.|++.+|.++|+.|..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence 4788999999999999999999999999999987
No 428
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.45 E-value=0.021 Score=57.91 Aligned_cols=37 Identities=38% Similarity=0.707 Sum_probs=30.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh----CCeEEeccceec
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYRV 98 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L----g~~vI~~D~~~~ 98 (818)
++.|++.||+|||||||...+.+.| ...||..|-|..
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~ 53 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTK 53 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeech
Confidence 5899999999999999988876666 577888887754
No 429
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.43 E-value=0.019 Score=53.97 Aligned_cols=25 Identities=44% Similarity=0.670 Sum_probs=22.0
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
...+.|.|++|+||||+++.++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3457789999999999999999887
No 430
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.43 E-value=0.013 Score=63.40 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=32.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~ 553 (818)
.+++.+|+++|++|+||||++..|+..+ | +.++++|-|..
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 3457899999999999999999999876 3 55788887544
No 431
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.43 E-value=0.015 Score=64.16 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=31.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEecccee
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (818)
.++.+|++.||+||||||++..||..+ | +.++++|-|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 356899999999999999999999876 3 4567777654
No 432
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.43 E-value=0.012 Score=64.90 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=29.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddf 551 (818)
+++.+|++.||+||||||++..|+..+. +.++.+|-|
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 4578999999999999999999998772 445666654
No 433
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.41 E-value=0.025 Score=66.41 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=29.6
Q ss_pred hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (818)
Q Consensus 58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~ 92 (818)
......++.++||+||||||+.+.||+.+|..++.
T Consensus 41 ~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 41 GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 33445699999999999999999999999977654
No 434
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.40 E-value=0.0079 Score=63.71 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=21.3
Q ss_pred eeCCCCccHHHHHHHHHHHhC-----Ccccccc
Q 003460 522 IGGPSGSGKTSLAHKMANIVG-----CEVVSLE 549 (818)
Q Consensus 522 IsG~sGSGKTTla~~L~~~lg-----~~vis~D 549 (818)
|.||+||||||+++.+++.+. +.++.+|
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcc
Confidence 579999999999999999874 3455555
No 435
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.39 E-value=0.015 Score=58.04 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=29.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~ 98 (818)
+++++|++||||||++..++..+ | +.++++|.+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 68999999999999999998866 4 46788887643
No 436
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.38 E-value=0.02 Score=64.32 Aligned_cols=38 Identities=29% Similarity=0.463 Sum_probs=31.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEecccee
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (818)
.++.+|++.|++||||||++..||..+ | +.++++|.|.
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 345789999999999999999999766 2 5678888764
No 437
>PRK14974 cell division protein FtsY; Provisional
Probab=95.35 E-value=0.016 Score=64.32 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=30.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~ 98 (818)
.++.+|+++|++||||||++..|+..+ | +.++++|-|..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 457899999999999999988888765 3 44577776643
No 438
>PRK09087 hypothetical protein; Validated
Probab=95.34 E-value=0.027 Score=59.17 Aligned_cols=34 Identities=35% Similarity=0.407 Sum_probs=30.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (818)
..+.|.|++|||||+|++.+++..++.+++.+++
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~ 78 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEI 78 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHc
Confidence 4589999999999999999998888888888665
No 439
>PRK14974 cell division protein FtsY; Provisional
Probab=95.34 E-value=0.014 Score=64.89 Aligned_cols=38 Identities=32% Similarity=0.580 Sum_probs=29.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 551 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddf 551 (818)
.++|.+|+++|++||||||++..|+..+ | +.++..|-|
T Consensus 137 ~~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 137 KGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 3468999999999999999999988766 2 335555544
No 440
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.33 E-value=0.029 Score=52.67 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
....+.|.|++|+||||+++.++..+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34578899999999999999999877
No 441
>PRK10646 ADP-binding protein; Provisional
Probab=95.32 E-value=0.026 Score=55.53 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=26.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~ 543 (818)
....-+|.+.|.-|||||||++.|++.||+
T Consensus 25 l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 25 CDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 344568999999999999999999999984
No 442
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.31 E-value=0.017 Score=57.39 Aligned_cols=25 Identities=48% Similarity=0.701 Sum_probs=23.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
|.+|+|+|++||||||++..|...+
T Consensus 1 m~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 1 MKVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999877
No 443
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.31 E-value=0.016 Score=58.06 Aligned_cols=106 Identities=21% Similarity=0.212 Sum_probs=58.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh----CCeEEecccee------ccc----ccC---------------C----CCC
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI----GCTLISMENYR------VGV----DEG---------------N----DLD 107 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L----g~~vI~~D~~~------~~~----~~~---------------~----~~~ 107 (818)
..-+++|.|+||||||||.+.+|... |...|+..+.- ++. .+. - ...
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL~ 103 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLN 103 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccccC
Confidence 34579999999999999999999744 45566665541 110 000 0 113
Q ss_pred cccHHHHHHHHHhhhc-CCcccc-ccchhhhhccccccccccCCccEEEEEecccch-hhhh
Q 003460 108 SIDFDALVQNLQDLTE-GKDTLI-PMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLR 166 (818)
Q Consensus 108 ~~d~~~l~~~L~~l~~-~~~i~~-p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~ 166 (818)
+.+.+.+...+...-- +..-.. +..+.....|+.-...-..+..|+++|-+|+.. +.++
T Consensus 104 a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR 165 (231)
T COG3840 104 AEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (231)
T ss_pred HHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHH
Confidence 3444444433332111 111111 235666666665444445666788898887754 4333
No 444
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.015 Score=65.45 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=31.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Cccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYF 552 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy 552 (818)
++|.+|++.||.||||||++..|+..+. +.++++|-|-
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3568999999999999999999997662 5577888664
No 445
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.31 E-value=0.014 Score=66.46 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=27.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEV 545 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~v 545 (818)
......|+|.|++|||||||++.|+..+|...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 34567899999999999999999999988553
No 446
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.30 E-value=0.033 Score=58.03 Aligned_cols=51 Identities=29% Similarity=0.420 Sum_probs=34.0
Q ss_pred ccch--hhHHHHHHHHHHHH----hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeE
Q 003460 40 SFDH--GYYLLVKSIQELRE----KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTL 90 (818)
Q Consensus 40 s~~~--~~~~l~~~i~~~~~----~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~v 90 (818)
+|++ |-..+........+ +.....-+.+.||+|.||||||+.+|+.+|+.+
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 5666 55566665554433 223456799999999999999999999998655
No 447
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=95.26 E-value=0.13 Score=53.22 Aligned_cols=107 Identities=21% Similarity=0.135 Sum_probs=59.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC------CeEEeccceecccccC-CCCCcccHHHHHHHHHhhhcCCccccccchh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGVDEG-NDLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~~~~-~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~ 134 (818)
|.+|.|+|-++|||||.|+.|++.|. ...|+-|. ..++... ..-++-+-.++...|..-
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~de-slg~~~ns~y~~s~~EK~lRg~L~S~------------- 66 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDE-SLGIEKNSNYGDSQAEKALRGKLRSA------------- 66 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechh-hcCCCCcccccccHHHHHHHHHHHHH-------------
Confidence 56899999999999999999999872 22333333 1222221 111222222333332210
Q ss_pred hhhccccccccccCCccEEEEEecccch---------hhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 135 QQKNRIGSKVIKGASSGVVIVDGTYALD---------ARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~---------~~l~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.........+||+|...-.. .....---++|+..+|.+.+.++--.|.
T Consensus 67 --------v~R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~ 123 (281)
T KOG3062|consen 67 --------VDRSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWNSERE 123 (281)
T ss_pred --------HHhhcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCCHHHHHHhcccCC
Confidence 01123445688888653322 1111112367899999999988876555
No 448
>COG0645 Predicted kinase [General function prediction only]
Probab=95.24 E-value=0.015 Score=57.73 Aligned_cols=37 Identities=32% Similarity=0.497 Sum_probs=33.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.++.+.|.+||||||+|+.|++.+|+..|+.|..-+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~ 38 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKR 38 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHH
Confidence 4677899999999999999999999999999987664
No 449
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.23 E-value=0.019 Score=64.98 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=31.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
|.-|.+.||+|+||||+|+.|++.+++++++.|.
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 4678999999999999999999999999999985
No 450
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.22 E-value=0.013 Score=61.59 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
=+|+|.||||||||||-+.++-..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998754
No 451
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.013 Score=58.94 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=34.8
Q ss_pred cCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccc
Q 003460 608 EDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSR 653 (818)
Q Consensus 608 ~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~ 653 (818)
...++.|.+-||-+- ....=.+|..||+.+++++++.|..+|--.+
T Consensus 132 ~e~e~~iy~eW~d~i~~~~~v~~dgiIYLrasPetc~~Ri~~R~R~E 178 (244)
T KOG4235|consen 132 NEVEYVIYQEWFDWILRSMDVSLDGIIYLRASPETCYKRIYLRAREE 178 (244)
T ss_pred ccchhhhHHHHHHHHHhccccccceEEEeecChHHHHHHHHHHhhhh
Confidence 345788888888653 2333457899999999999999999986444
No 452
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.20 E-value=0.016 Score=57.86 Aligned_cols=34 Identities=32% Similarity=0.488 Sum_probs=27.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---C--Cccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYF 552 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy 552 (818)
++++.|++||||||++..++..+ | +.++++|.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 68899999999999999998876 3 4567777653
No 453
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=95.20 E-value=0.017 Score=60.99 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=33.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC---cccccccccch
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC---EVVSLESYFKS 554 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~---~vis~Ddfy~~ 554 (818)
...+|.+.|+.|||||+||+.||+.||. +-+.||+.|.+
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvd 111 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVD 111 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeec
Confidence 4578999999999999999999999994 45578888876
No 454
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.16 E-value=0.018 Score=65.31 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=31.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
+..|.+.||+|+||||+|+.|++.++++++..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 4679999999999999999999999998888876
No 455
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.15 E-value=0.028 Score=56.44 Aligned_cols=36 Identities=42% Similarity=0.609 Sum_probs=28.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCC----eE--Eecccee
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGC----TL--ISMENYR 97 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~----~v--I~~D~~~ 97 (818)
...+.++||+|+|||.+|+.|++.+.. .+ +++-.|-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence 467899999999999999999999984 44 4555553
No 456
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.14 E-value=0.042 Score=64.17 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=41.3
Q ss_pred CCcccccch--hhHHHHHHHHHHH-------Hh--cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 35 LPVHASFDH--GYYLLVKSIQELR-------EK--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 35 ~~~~~s~~~--~~~~l~~~i~~~~-------~~--~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
.+...+|++ |...+.+.+.... .+ -+.+.-|.+.||+|+|||.+|+.+|..+|.+++..|.
T Consensus 221 ~~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~ 292 (489)
T CHL00195 221 YSVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV 292 (489)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence 344566776 4444444443321 11 1345678999999999999999999999988766553
No 457
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.13 E-value=0.016 Score=59.49 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
+|.|+||+||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999998877653
No 458
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.11 E-value=0.017 Score=56.13 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l 541 (818)
+|+|.|+++||||||++.|.+.+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999877
No 459
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.09 E-value=0.073 Score=50.54 Aligned_cols=41 Identities=17% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHH--hcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 46 YLLVKSIQELRE--KKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 46 ~~l~~~i~~~~~--~~~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
..+++++..+.. ++++|+++..-|++|+|||.+++.||+.+
T Consensus 35 ~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 35 EVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 345666666664 35678999999999999999999999975
No 460
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.08 E-value=0.017 Score=65.18 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=25.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.+|.+|+|+|.+|||||||+..|...|+
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 3689999999999999999999998875
No 461
>PRK10867 signal recognition particle protein; Provisional
Probab=95.06 E-value=0.02 Score=65.63 Aligned_cols=38 Identities=29% Similarity=0.436 Sum_probs=31.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh----C--Cccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESYF 552 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~l----g--~~vis~Ddfy 552 (818)
++|.+|.++|++||||||++..|+..+ | +.++++|.|-
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 458999999999999999998888755 3 5678888753
No 462
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=95.05 E-value=0.14 Score=62.41 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=31.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceeccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV 100 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~ 100 (818)
+..+|.+.|.+|+||||+|+.|++.|+ +.+++.|.+.+.+
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~ 258 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRL 258 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhh
Confidence 457899999999999999999999985 4555556655544
No 463
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.04 Score=62.07 Aligned_cols=50 Identities=26% Similarity=0.305 Sum_probs=38.0
Q ss_pred cccch--hhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460 39 ASFDH--GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (818)
Q Consensus 39 ~s~~~--~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~ 88 (818)
-+|++ |-..+++.+.......+-+-.+.+.||+|+||||+|+.+++.++|
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 34555 455566666665555555667899999999999999999998875
No 464
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.04 E-value=0.041 Score=61.81 Aligned_cols=39 Identities=33% Similarity=0.590 Sum_probs=34.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC-------CeEEeccceecc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-------CTLISMENYRVG 99 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg-------~~vI~~D~~~~~ 99 (818)
+..+|++.||+|+||||....||.++. +.+|++|.|+-+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG 247 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG 247 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh
Confidence 478999999999999999999988763 789999999764
No 465
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.04 E-value=0.017 Score=60.69 Aligned_cols=25 Identities=40% Similarity=0.489 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
--+|+|.||||||||||.+.+|...
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3469999999999999999999855
No 466
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.03 E-value=0.023 Score=63.09 Aligned_cols=30 Identities=40% Similarity=0.522 Sum_probs=26.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI 91 (818)
...|+|.|++|||||||++.|+..+|..++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 357999999999999999999998887763
No 467
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.03 E-value=0.02 Score=58.89 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
+|.|+||+||||||+.+.|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999998877653
No 468
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.02 E-value=0.02 Score=55.65 Aligned_cols=24 Identities=42% Similarity=0.596 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
++|+|+|+++||||||++.|...|
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998876
No 469
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.02 E-value=0.02 Score=64.93 Aligned_cols=38 Identities=42% Similarity=0.605 Sum_probs=30.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh----C--CeEEeccceec
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENYRV 98 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L----g--~~vI~~D~~~~ 98 (818)
++.+|+++|++||||||++..||..+ | +.++++|.|..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 35789999999999999999999754 3 56788887644
No 470
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.01 E-value=0.018 Score=55.15 Aligned_cols=26 Identities=46% Similarity=0.769 Sum_probs=22.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEV 545 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~v 545 (818)
|.|.|++|+|||++++.+++.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 56799999999999999999986443
No 471
>PF13173 AAA_14: AAA domain
Probab=95.00 E-value=0.029 Score=53.28 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=28.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC----CeEEeccce
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG----CTLISMENY 96 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg----~~vI~~D~~ 96 (818)
..++.|.|+.|+||||+++.+++.+. +..++.|+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~ 40 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP 40 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH
Confidence 35789999999999999999997664 566777775
No 472
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.98 E-value=0.022 Score=65.38 Aligned_cols=37 Identities=32% Similarity=0.498 Sum_probs=30.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh----C--Ccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESY 551 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~l----g--~~vis~Ddf 551 (818)
++|.+|.++|++||||||++..|+..+ | +.++++|-|
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 468999999999999999999998764 2 567888864
No 473
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.97 E-value=0.014 Score=59.83 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHH
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMAN 539 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~ 539 (818)
-.+..|.++.||||||||||.+.|-.
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHh
Confidence 34567899999999999999998865
No 474
>PRK13768 GTPase; Provisional
Probab=94.96 E-value=0.028 Score=60.05 Aligned_cols=35 Identities=29% Similarity=0.511 Sum_probs=29.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccce
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY 96 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~ 96 (818)
+.+|.|.|++||||||++..++..+ | +.+|+.|.-
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 4789999999999999999998766 3 567888863
No 475
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.94 E-value=0.023 Score=56.40 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=22.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.+|+|+|++||||||++.+|...+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998773
No 476
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=94.93 E-value=0.023 Score=55.75 Aligned_cols=28 Identities=43% Similarity=0.596 Sum_probs=25.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCe
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCT 89 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~ 89 (818)
+++|+|.||-.||||||+++||+.+|..
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCCC
Confidence 5789999999999999999999998754
No 477
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.92 E-value=0.04 Score=67.01 Aligned_cols=27 Identities=37% Similarity=0.382 Sum_probs=23.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
++--.|||.|.||||||||++.|...+
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344579999999999999999998754
No 478
>PF13173 AAA_14: AAA domain
Probab=94.92 E-value=0.026 Score=53.64 Aligned_cols=36 Identities=25% Similarity=0.361 Sum_probs=27.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC----Ccccccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVG----CEVVSLESYFK 553 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg----~~vis~Ddfy~ 553 (818)
.++.|.||.|+||||+++.+++.+. ...+++|+...
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 4688999999999999999997654 44555555543
No 479
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.91 E-value=0.047 Score=57.66 Aligned_cols=59 Identities=14% Similarity=0.265 Sum_probs=37.1
Q ss_pred Ccccccch---h-hHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccc
Q 003460 36 PVHASFDH---G-YYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMEN 95 (818)
Q Consensus 36 ~~~~s~~~---~-~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~ 95 (818)
|...+||+ + -...+..++...... ....+.|.||+|||||+++..++..+. +.+++.+.
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~~-~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQE-HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 33445655 1 233445555444333 334688999999999999999987653 34555554
No 480
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.91 E-value=0.029 Score=62.47 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=31.4
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
+.|.+++|-||+|+|||.+|+.++..+|+.+|.++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa 181 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSA 181 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEH
Confidence 568999999999999999999999999987655544
No 481
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.021 Score=64.91 Aligned_cols=37 Identities=32% Similarity=0.453 Sum_probs=29.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh----C--Cccccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESYF 552 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l----g--~~vis~Ddfy 552 (818)
++.+|+++||+||||||++..|+..+ | +.++++|-|-
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R 264 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR 264 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence 46789999999999999999999754 2 4567777643
No 482
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=94.86 E-value=0.024 Score=55.59 Aligned_cols=28 Identities=39% Similarity=0.494 Sum_probs=25.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCE 544 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~ 544 (818)
..+|.|.||-+||||||+++|++.++.+
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhCCC
Confidence 4689999999999999999999999854
No 483
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.84 E-value=0.024 Score=63.49 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=32.3
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~ 553 (818)
.++.+|++.||+||||||++..|+..+ | +.++++|.|--
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 357899999999999999999999766 2 56788887744
No 484
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.84 E-value=0.022 Score=56.55 Aligned_cols=25 Identities=44% Similarity=0.591 Sum_probs=23.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
+.+++|+|.++||||||...|...|
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L 26 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKL 26 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHH
Confidence 6799999999999999999998877
No 485
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.84 E-value=0.031 Score=63.34 Aligned_cols=38 Identities=34% Similarity=0.600 Sum_probs=31.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh---------CCeEEeccceec
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI---------GCTLISMENYRV 98 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L---------g~~vI~~D~~~~ 98 (818)
++.+|++.|++|+||||++..||..+ .+.++++|.|.-
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 46799999999999999999999765 256789998744
No 486
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.82 E-value=0.022 Score=65.43 Aligned_cols=37 Identities=35% Similarity=0.510 Sum_probs=31.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 551 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddf 551 (818)
.+|.+|.++|++||||||++..|+..+ | +.++++|.|
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 468899999999999999999999877 2 557777765
No 487
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.82 E-value=0.02 Score=56.75 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
+.|++|+|.++||||||..+|...|.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~ 27 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLK 27 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHH
Confidence 56899999999999999999988773
No 488
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.79 E-value=0.054 Score=51.40 Aligned_cols=40 Identities=28% Similarity=0.462 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHc--CCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 502 LSVQAIQALLEN--KGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 502 ~~~~~i~~l~~~--~~~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
.++.++..+.++ .++|+++..-|++|+|||.+++.||+.+
T Consensus 36 ~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 36 VVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 355666666654 6689999999999999999999999975
No 489
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.79 E-value=0.02 Score=58.10 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=0.0
Q ss_pred EEeeeCCCCccHHHHHHHHH
Q 003460 519 IVGIGGPSGSGKTSLAHKMA 538 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~ 538 (818)
++||.|++|||||||.+.|+
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~ 39 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLN 39 (190)
T ss_pred EEEEECCCCCCHHHHHHHHh
No 490
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.79 E-value=0.021 Score=56.46 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=21.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l 541 (818)
||+|+|++||||||++.+|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999876
No 491
>PRK10867 signal recognition particle protein; Provisional
Probab=94.78 E-value=0.035 Score=63.70 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh----C--CeEEeccceec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENYRV 98 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L----g--~~vI~~D~~~~ 98 (818)
.++.+|.++|++||||||++..||..+ | +.++++|.|..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 447899999999999999888888755 3 56789998744
No 492
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=94.77 E-value=0.021 Score=59.35 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=26.6
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcc-cccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEV-VSLESYFK 553 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~v-is~Ddfy~ 553 (818)
++|||+|.+||||||+|+.+.+. |..+ ++|-|--+
T Consensus 1 miI~i~G~~gsGKstva~~~~~~-g~~~~~~~~d~ik 36 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN-YNAVKYQLADPIK 36 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc-CCcEEEehhHHHH
Confidence 38999999999999999988764 5444 66554433
No 493
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.76 E-value=0.035 Score=57.81 Aligned_cols=30 Identities=37% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEV 545 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~v 545 (818)
...-+.+.||+|.||||||+.+++.+++.+
T Consensus 49 ~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp ---EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred CcceEEEECCCccchhHHHHHHHhccCCCe
Confidence 344567899999999999999999998553
No 494
>PRK09087 hypothetical protein; Validated
Probab=94.75 E-value=0.02 Score=60.13 Aligned_cols=34 Identities=29% Similarity=0.328 Sum_probs=28.4
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
+.|.|++|||||+|++.+++..++.+++.++|-.
T Consensus 47 l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~ 80 (226)
T PRK09087 47 VVLAGPVGSGKTHLASIWREKSDALLIHPNEIGS 80 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEecHHHcch
Confidence 5789999999999999999888877777765443
No 495
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.75 E-value=0.024 Score=64.20 Aligned_cols=34 Identities=29% Similarity=0.601 Sum_probs=30.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES 550 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd 550 (818)
|.-|.+.||+||||||+|+.|+..++++++..|.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 5678899999999999999999999998888885
No 496
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.025 Score=64.00 Aligned_cols=39 Identities=28% Similarity=0.476 Sum_probs=32.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC---------Ccccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG---------CEVVSLESYFK 553 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg---------~~vis~Ddfy~ 553 (818)
.+|.+|.+.||+|+||||++..|+..+. +.++++|.|.-
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 4578999999999999999999997652 55888887743
No 497
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.74 E-value=0.018 Score=54.89 Aligned_cols=20 Identities=55% Similarity=0.891 Sum_probs=0.0
Q ss_pred EEeeeCCCCccHHHHHHHHH
Q 003460 519 IVGIGGPSGSGKTSLAHKMA 538 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~ 538 (818)
+++|.|++|||||||.+.|+
T Consensus 13 ~~~i~G~nGsGKStLl~~l~ 32 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALA 32 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHT
T ss_pred EEEEEccCCCccccceeeec
No 498
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.73 E-value=0.021 Score=59.20 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=0.0
Q ss_pred EEeeeCCCCccHHHHHHHHH
Q 003460 519 IVGIGGPSGSGKTSLAHKMA 538 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~ 538 (818)
++||.|++|||||||.+.|+
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~ 50 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLIL 50 (216)
T ss_pred EEEEECCCCCCHHHHHHHHh
No 499
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.73 E-value=0.034 Score=62.30 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=32.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~ 98 (818)
.+..+|+++||+||||||++..|+..+ | +.+|++|.|.-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 346789999999999999999998766 3 56799998744
No 500
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.72 E-value=0.03 Score=56.85 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 505 QAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 505 ~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
...+.+...-.....|+|+|++||||||+.+.|...+
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Done!