Query 003460
Match_columns 818
No_of_seqs 712 out of 3595
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 01:59:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqc_A Pantothenate kinase; bi 99.9 6.1E-27 2.1E-31 254.7 13.0 241 454-695 17-314 (321)
2 3ghx_A Adenylate cyclase CYAB; 99.9 4.3E-23 1.5E-27 206.4 10.5 128 253-395 35-178 (179)
3 3tqc_A Pantothenate kinase; bi 99.9 2.8E-22 9.6E-27 218.0 16.3 198 32-229 43-311 (321)
4 1yem_A Hypothetical protein; s 99.9 3.6E-22 1.2E-26 199.7 12.4 135 249-399 29-176 (179)
5 2een_A Hypothetical protein PH 99.9 1E-21 3.5E-26 197.3 12.5 142 250-401 21-181 (183)
6 1sq5_A Pantothenate kinase; P- 99.8 3.5E-21 1.2E-25 209.1 13.0 176 515-691 78-298 (308)
7 1a7j_A Phosphoribulokinase; tr 99.8 2.2E-21 7.4E-26 208.9 11.0 174 515-689 3-215 (290)
8 1uj2_A Uridine-cytidine kinase 99.8 8.4E-21 2.9E-25 199.9 15.2 172 514-687 19-211 (252)
9 3n10_A Adenylate cyclase 2; CY 99.8 8.8E-21 3E-25 189.9 12.4 129 251-394 33-177 (179)
10 1odf_A YGR205W, hypothetical 3 99.8 2.1E-20 7.1E-25 201.2 11.9 179 513-692 27-279 (290)
11 2dc4_A PH1012 protein, 165AA l 99.8 1.1E-19 3.6E-24 179.6 13.9 129 252-396 24-165 (165)
12 3aez_A Pantothenate kinase; tr 99.8 2.2E-19 7.4E-24 195.2 16.3 238 454-692 11-302 (312)
13 2ga8_A Hypothetical 39.9 kDa p 99.8 1.8E-19 6.3E-24 196.8 10.0 140 545-687 158-349 (359)
14 1sq5_A Pantothenate kinase; P- 99.8 1.5E-18 5.1E-23 188.4 17.1 194 34-227 33-297 (308)
15 2aca_A Putative adenylate cycl 99.8 4E-19 1.4E-23 179.4 9.2 131 253-398 37-183 (189)
16 1a7j_A Phosphoribulokinase; tr 99.8 8.9E-19 3.1E-23 188.5 11.3 167 61-227 4-216 (290)
17 3asz_A Uridine kinase; cytidin 99.8 5.1E-18 1.8E-22 173.0 15.0 175 515-691 4-189 (211)
18 3c8u_A Fructokinase; YP_612366 99.8 4E-18 1.4E-22 174.1 13.2 171 514-688 19-207 (208)
19 1uj2_A Uridine-cytidine kinase 99.7 6.4E-18 2.2E-22 177.9 13.7 164 60-224 20-211 (252)
20 3aez_A Pantothenate kinase; tr 99.7 6.1E-17 2.1E-21 175.9 16.9 199 31-229 36-302 (312)
21 1rz3_A Hypothetical protein rb 99.7 9.1E-18 3.1E-22 170.6 9.4 168 514-689 19-200 (201)
22 1rz3_A Hypothetical protein rb 99.7 2E-17 6.7E-22 168.2 10.1 164 59-226 19-200 (201)
23 2jeo_A Uridine-cytidine kinase 99.7 1.3E-16 4.6E-21 167.0 16.5 172 515-689 23-215 (245)
24 3c8u_A Fructokinase; YP_612366 99.7 8.7E-17 3E-21 164.2 12.9 166 59-225 19-207 (208)
25 2ga8_A Hypothetical 39.9 kDa p 99.7 4.6E-17 1.6E-21 177.8 11.1 135 89-224 157-349 (359)
26 4i1u_A Dephospho-COA kinase; s 99.7 9E-17 3.1E-21 164.2 9.2 157 59-226 6-184 (210)
27 1odf_A YGR205W, hypothetical 3 99.6 4.2E-16 1.4E-20 167.6 12.9 183 43-227 11-277 (290)
28 3asz_A Uridine kinase; cytidin 99.6 1.1E-15 3.8E-20 155.6 14.2 167 60-227 4-188 (211)
29 2jeo_A Uridine-cytidine kinase 99.6 4.3E-15 1.5E-19 155.5 16.4 166 60-226 23-215 (245)
30 2grj_A Dephospho-COA kinase; T 99.6 1.6E-15 5.4E-20 153.4 9.3 145 59-227 9-171 (192)
31 2grj_A Dephospho-COA kinase; T 99.5 1.1E-14 3.8E-19 147.2 7.4 149 514-690 9-171 (192)
32 3bhd_A Thtpase, thiamine triph 99.5 7.4E-14 2.5E-18 145.4 10.7 139 252-399 47-221 (234)
33 2f6r_A COA synthase, bifunctio 99.5 6.5E-14 2.2E-18 149.9 10.3 157 60-227 73-253 (281)
34 2qt1_A Nicotinamide riboside k 99.4 5E-13 1.7E-17 135.8 12.0 159 59-227 18-190 (207)
35 1jjv_A Dephospho-COA kinase; P 99.4 2.2E-13 7.6E-18 138.1 7.7 152 62-227 2-177 (206)
36 4i1u_A Dephospho-COA kinase; s 99.4 2.3E-13 8E-18 138.9 7.6 160 514-689 6-184 (210)
37 2qt1_A Nicotinamide riboside k 99.4 9.8E-13 3.4E-17 133.5 11.7 163 513-689 17-189 (207)
38 1vht_A Dephospho-COA kinase; s 99.4 1.4E-12 4.8E-17 133.5 10.8 156 61-227 3-179 (218)
39 2f6r_A COA synthase, bifunctio 99.4 5.9E-13 2E-17 142.4 7.6 163 514-689 72-252 (281)
40 2if2_A Dephospho-COA kinase; a 99.3 6E-13 2.1E-17 134.6 5.5 150 62-226 1-175 (204)
41 1uf9_A TT1252 protein; P-loop, 99.3 1E-12 3.5E-17 132.2 5.4 158 59-227 5-178 (203)
42 3v85_A CYTH-like phosphatase; 99.3 4.4E-12 1.5E-16 129.9 7.4 129 249-385 22-195 (210)
43 3d3q_A TRNA delta(2)-isopenten 99.2 2.6E-12 9E-17 140.0 5.1 170 63-253 8-186 (340)
44 3ake_A Cytidylate kinase; CMP 99.2 1.8E-11 6.3E-16 123.5 10.4 155 64-227 4-192 (208)
45 1jjv_A Dephospho-COA kinase; P 99.2 8.2E-12 2.8E-16 126.5 6.4 158 517-690 2-177 (206)
46 3lw7_A Adenylate kinase relate 99.2 1.3E-11 4.6E-16 120.2 6.9 154 63-227 2-161 (179)
47 3d3q_A TRNA delta(2)-isopenten 99.2 1.3E-12 4.5E-17 142.4 -0.9 153 517-678 7-164 (340)
48 3tj7_A GBAA_1210 protein; stru 99.2 9.7E-11 3.3E-15 118.2 12.5 119 255-385 32-178 (195)
49 2gfg_A BH2851; antiparallel ba 99.1 2.3E-10 7.7E-15 115.6 13.3 115 258-384 35-177 (193)
50 3r20_A Cytidylate kinase; stru 99.1 7E-11 2.4E-15 122.6 9.5 173 61-235 8-218 (233)
51 1cke_A CK, MSSA, protein (cyti 99.1 1.1E-10 3.6E-15 119.8 9.5 162 62-226 5-205 (227)
52 2if2_A Dephospho-COA kinase; a 99.1 3.5E-11 1.2E-15 121.5 4.6 156 518-689 2-175 (204)
53 3t61_A Gluconokinase; PSI-biol 99.1 4.5E-10 1.5E-14 113.3 12.4 136 61-226 17-163 (202)
54 1vht_A Dephospho-COA kinase; s 99.1 1.2E-10 4.1E-15 119.0 8.2 159 516-690 3-179 (218)
55 1uf9_A TT1252 protein; P-loop, 99.1 6.8E-11 2.3E-15 118.8 6.0 160 514-689 5-177 (203)
56 4e22_A Cytidylate kinase; P-lo 99.1 2.2E-10 7.7E-15 120.3 10.2 167 60-227 25-228 (252)
57 1tev_A UMP-CMP kinase; ploop, 99.1 2.2E-10 7.5E-15 114.0 9.5 125 62-191 3-136 (196)
58 1q3t_A Cytidylate kinase; nucl 99.1 3.1E-10 1.1E-14 117.7 9.9 165 60-226 14-217 (236)
59 3ake_A Cytidylate kinase; CMP 99.0 9.6E-10 3.3E-14 110.8 9.5 125 519-651 4-158 (208)
60 3lw7_A Adenylate kinase relate 99.0 7.4E-10 2.5E-14 107.7 7.7 155 518-690 2-161 (179)
61 2h92_A Cytidylate kinase; ross 99.0 1.1E-09 3.6E-14 111.8 9.2 155 62-226 3-200 (219)
62 1cke_A CK, MSSA, protein (cyti 98.9 1.1E-09 3.8E-14 112.1 8.6 166 517-689 5-205 (227)
63 1qf9_A UMP/CMP kinase, protein 98.9 2E-09 6.9E-14 106.8 9.6 120 61-191 5-133 (194)
64 1zuh_A Shikimate kinase; alpha 98.9 1.8E-09 6.3E-14 105.5 8.8 40 60-99 5-44 (168)
65 2bwj_A Adenylate kinase 5; pho 98.9 1.6E-09 5.4E-14 108.4 8.2 121 62-191 12-138 (199)
66 3kb2_A SPBC2 prophage-derived 98.9 3.5E-09 1.2E-13 103.1 10.2 147 62-226 1-149 (173)
67 2iyv_A Shikimate kinase, SK; t 98.9 3E-10 1E-14 112.7 2.2 144 63-227 3-152 (184)
68 3r20_A Cytidylate kinase; stru 98.9 2.4E-09 8.2E-14 111.1 8.5 169 516-689 8-210 (233)
69 1knq_A Gluconate kinase; ALFA/ 98.9 1.2E-08 4.2E-13 100.1 13.2 142 60-226 6-157 (175)
70 3t61_A Gluconokinase; PSI-biol 98.9 8.3E-09 2.9E-13 104.0 12.1 141 516-689 17-163 (202)
71 3vaa_A Shikimate kinase, SK; s 98.9 3.5E-09 1.2E-13 106.7 9.0 149 60-227 23-179 (199)
72 1tev_A UMP-CMP kinase; ploop, 98.9 3.8E-09 1.3E-13 105.0 9.0 126 516-651 2-136 (196)
73 1q3t_A Cytidylate kinase; nucl 98.9 6.5E-09 2.2E-13 107.7 11.0 169 514-689 13-217 (236)
74 1ukz_A Uridylate kinase; trans 98.9 2.7E-09 9.2E-14 107.5 7.2 123 60-190 13-142 (203)
75 1e6c_A Shikimate kinase; phosp 98.8 2.2E-09 7.7E-14 104.9 6.2 145 62-226 2-153 (173)
76 3trf_A Shikimate kinase, SK; a 98.8 1.6E-09 5.4E-14 107.5 4.8 38 62-99 5-42 (185)
77 3tlx_A Adenylate kinase 2; str 98.8 1.3E-08 4.4E-13 106.2 11.9 129 52-190 19-157 (243)
78 4e22_A Cytidylate kinase; P-lo 98.8 6.6E-09 2.2E-13 109.1 9.2 172 516-689 26-227 (252)
79 4eun_A Thermoresistant glucoki 98.8 1.3E-08 4.4E-13 102.7 10.8 141 61-227 28-178 (200)
80 2pt5_A Shikimate kinase, SK; a 98.8 1.1E-09 3.7E-14 106.8 2.3 108 64-190 2-114 (168)
81 2cdn_A Adenylate kinase; phosp 98.8 1.2E-08 4.1E-13 102.7 9.4 155 60-226 18-185 (201)
82 1qf9_A UMP/CMP kinase, protein 98.8 1.8E-08 6.2E-13 99.8 9.8 121 515-651 4-133 (194)
83 3fb4_A Adenylate kinase; psych 98.8 5.9E-09 2E-13 106.0 6.3 116 64-189 2-127 (216)
84 3kb2_A SPBC2 prophage-derived 98.8 1.5E-08 5.1E-13 98.7 8.5 145 518-689 2-149 (173)
85 2c95_A Adenylate kinase 1; tra 98.7 2.2E-08 7.7E-13 99.7 9.2 124 59-191 6-135 (196)
86 3dl0_A Adenylate kinase; phosp 98.7 8.9E-09 3.1E-13 104.8 6.1 115 64-189 2-127 (216)
87 1y63_A LMAJ004144AAA protein; 98.7 2.1E-08 7E-13 99.9 8.5 40 60-99 8-48 (184)
88 2h92_A Cytidylate kinase; ross 98.7 4.1E-08 1.4E-12 100.0 10.1 38 517-554 3-40 (219)
89 3fdi_A Uncharacterized protein 98.7 2.7E-08 9.1E-13 101.0 7.8 162 62-227 6-182 (201)
90 1kag_A SKI, shikimate kinase I 98.7 2.1E-09 7E-14 105.3 -0.8 37 62-98 4-40 (173)
91 2rhm_A Putative kinase; P-loop 98.6 5.3E-08 1.8E-12 96.7 9.1 151 60-227 3-169 (193)
92 3cm0_A Adenylate kinase; ATP-b 98.6 5.7E-08 1.9E-12 96.1 8.9 115 61-190 3-127 (186)
93 3a4m_A L-seryl-tRNA(SEC) kinas 98.6 1.4E-07 4.7E-12 99.4 12.4 137 60-227 2-156 (260)
94 3tlx_A Adenylate kinase 2; str 98.6 1.1E-07 3.7E-12 99.2 11.2 125 511-650 23-157 (243)
95 2bwj_A Adenylate kinase 5; pho 98.6 4E-08 1.4E-12 98.1 7.5 121 516-651 11-138 (199)
96 2pt5_A Shikimate kinase, SK; a 98.6 2.9E-08 9.8E-13 96.6 6.1 36 519-554 2-37 (168)
97 1ukz_A Uridylate kinase; trans 98.6 1E-07 3.4E-12 95.9 9.8 40 515-554 13-52 (203)
98 1via_A Shikimate kinase; struc 98.6 1.4E-08 4.6E-13 100.0 3.3 38 62-99 4-41 (175)
99 2iyv_A Shikimate kinase, SK; t 98.6 2.4E-08 8.1E-13 98.9 5.0 36 519-554 4-39 (184)
100 4eun_A Thermoresistant glucoki 98.6 2.3E-07 7.8E-12 93.4 11.5 40 515-554 27-66 (200)
101 3vaa_A Shikimate kinase, SK; s 98.6 8.5E-08 2.9E-12 96.5 8.3 39 516-554 24-62 (199)
102 2fbl_A Hypothetical protein NE 98.6 1.1E-07 3.8E-12 92.0 8.7 94 257-371 23-123 (153)
103 2pbr_A DTMP kinase, thymidylat 98.6 1.4E-07 4.8E-12 93.6 9.7 32 64-95 2-36 (195)
104 3tr0_A Guanylate kinase, GMP k 98.6 3.7E-07 1.3E-11 91.6 12.7 155 61-226 6-171 (205)
105 3hdt_A Putative kinase; struct 98.6 1.3E-07 4.3E-12 97.6 9.1 38 61-98 13-50 (223)
106 3trf_A Shikimate kinase, SK; a 98.5 5.1E-08 1.7E-12 96.5 5.5 38 517-554 5-42 (185)
107 2z0h_A DTMP kinase, thymidylat 98.5 1.7E-07 5.8E-12 93.4 9.4 32 64-95 2-36 (197)
108 3nwj_A ATSK2; P loop, shikimat 98.5 9E-08 3.1E-12 100.4 7.6 40 62-101 48-87 (250)
109 2cdn_A Adenylate kinase; phosp 98.5 2.2E-07 7.4E-12 93.5 10.0 41 514-554 17-57 (201)
110 1knq_A Gluconate kinase; ALFA/ 98.5 5.2E-07 1.8E-11 88.4 12.4 40 515-554 6-45 (175)
111 3iij_A Coilin-interacting nucl 98.5 1E-07 3.5E-12 94.0 7.1 103 61-190 10-118 (180)
112 2jaq_A Deoxyguanosine kinase; 98.5 1.9E-07 6.6E-12 93.3 9.1 61 167-227 123-185 (205)
113 1kht_A Adenylate kinase; phosp 98.5 5.9E-08 2E-12 96.1 5.2 37 62-98 3-44 (192)
114 1zuh_A Shikimate kinase; alpha 98.5 6.4E-08 2.2E-12 94.4 5.3 39 516-554 6-44 (168)
115 3fb4_A Adenylate kinase; psych 98.5 1.5E-07 5.3E-12 95.5 8.0 116 519-649 2-127 (216)
116 1qhx_A CPT, protein (chloramph 98.5 1.1E-06 3.6E-11 86.2 13.8 36 63-98 4-41 (178)
117 2c95_A Adenylate kinase 1; tra 98.5 2.2E-07 7.6E-12 92.4 9.0 120 516-650 8-134 (196)
118 1e6c_A Shikimate kinase; phosp 98.5 6.2E-08 2.1E-12 94.6 4.8 37 518-554 3-39 (173)
119 1ly1_A Polynucleotide kinase; 98.5 8.4E-08 2.9E-12 94.0 5.7 114 62-191 2-128 (181)
120 2jaq_A Deoxyguanosine kinase; 98.5 2.4E-08 8.3E-13 99.9 1.3 59 627-690 123-185 (205)
121 1kht_A Adenylate kinase; phosp 98.5 3E-07 1E-11 90.9 9.0 38 517-554 3-45 (192)
122 2j41_A Guanylate kinase; GMP, 98.5 1.6E-07 5.5E-12 94.3 7.1 157 62-226 6-171 (207)
123 2qor_A Guanylate kinase; phosp 98.5 3.9E-07 1.3E-11 92.0 9.8 162 58-226 8-181 (204)
124 1nks_A Adenylate kinase; therm 98.5 4.6E-07 1.6E-11 89.6 10.0 37 62-98 1-42 (194)
125 3be4_A Adenylate kinase; malar 98.5 2.6E-07 8.9E-12 94.3 8.3 120 61-190 4-133 (217)
126 1aky_A Adenylate kinase; ATP:A 98.4 2.9E-07 9.9E-12 94.0 8.4 121 61-190 3-133 (220)
127 3dl0_A Adenylate kinase; phosp 98.4 2.9E-07 9.9E-12 93.5 8.1 36 519-554 2-37 (216)
128 3fdi_A Uncharacterized protein 98.4 3.7E-07 1.3E-11 92.5 8.2 36 517-553 6-41 (201)
129 1zd8_A GTP:AMP phosphotransfer 98.4 2.6E-07 9E-12 94.8 7.0 119 60-190 5-129 (227)
130 2rhm_A Putative kinase; P-loop 98.4 3.6E-07 1.2E-11 90.6 7.8 39 515-553 3-41 (193)
131 2ze6_A Isopentenyl transferase 98.4 1E-06 3.4E-11 92.5 11.3 35 62-96 1-35 (253)
132 3umf_A Adenylate kinase; rossm 98.4 3.8E-07 1.3E-11 93.6 7.6 124 58-191 25-155 (217)
133 2xb4_A Adenylate kinase; ATP-b 98.4 5.2E-07 1.8E-11 92.6 8.4 116 64-190 2-127 (223)
134 2qor_A Guanylate kinase; phosp 98.4 5.7E-07 2E-11 90.8 8.4 132 515-649 10-147 (204)
135 1e4v_A Adenylate kinase; trans 98.4 4.4E-07 1.5E-11 92.2 7.5 117 64-190 2-124 (214)
136 2vli_A Antibiotic resistance p 98.4 7.7E-07 2.6E-11 87.5 8.5 31 61-91 4-34 (183)
137 3uie_A Adenylyl-sulfate kinase 98.3 2.6E-06 9E-11 85.6 12.3 42 59-100 22-68 (200)
138 2wwf_A Thymidilate kinase, put 98.3 5.1E-07 1.7E-11 91.0 6.5 36 61-96 9-44 (212)
139 2vp4_A Deoxynucleoside kinase; 98.3 4.5E-08 1.5E-12 101.1 -1.5 169 515-689 18-208 (230)
140 1y63_A LMAJ004144AAA protein; 98.3 1.1E-06 3.9E-11 87.2 8.7 40 515-554 8-48 (184)
141 1ak2_A Adenylate kinase isoenz 98.3 9.8E-07 3.3E-11 91.0 8.1 120 60-190 14-144 (233)
142 3hdt_A Putative kinase; struct 98.3 2.1E-07 7E-12 96.0 2.9 38 516-553 13-50 (223)
143 1aky_A Adenylate kinase; ATP:A 98.3 1.3E-06 4.3E-11 89.1 8.8 40 515-554 2-41 (220)
144 2j41_A Guanylate kinase; GMP, 98.3 1.1E-06 3.9E-11 88.0 8.3 127 516-650 5-140 (207)
145 2pbr_A DTMP kinase, thymidylat 98.3 1.4E-06 4.7E-11 86.3 8.8 32 519-550 2-36 (195)
146 3gmt_A Adenylate kinase; ssgci 98.3 1E-06 3.4E-11 91.0 7.8 120 61-191 7-133 (230)
147 1zak_A Adenylate kinase; ATP:A 98.3 2.4E-07 8.3E-12 94.7 3.0 40 60-99 3-42 (222)
148 2pez_A Bifunctional 3'-phospho 98.3 2.9E-06 1E-10 83.5 10.5 35 61-95 4-41 (179)
149 2yvu_A Probable adenylyl-sulfa 98.3 1.9E-06 6.5E-11 85.4 9.2 40 60-99 11-55 (186)
150 3cm0_A Adenylate kinase; ATP-b 98.3 1.3E-06 4.6E-11 86.1 8.0 39 516-554 3-41 (186)
151 3a00_A Guanylate kinase, GMP k 98.3 1.3E-06 4.4E-11 86.9 7.8 25 63-87 2-26 (186)
152 3foz_A TRNA delta(2)-isopenten 98.3 1.2E-07 4.2E-12 101.7 0.2 172 60-254 8-186 (316)
153 1ly1_A Polynucleotide kinase; 98.3 5.9E-07 2E-11 87.9 5.1 114 517-651 2-128 (181)
154 3exa_A TRNA delta(2)-isopenten 98.3 7.1E-08 2.4E-12 103.7 -1.6 42 62-103 3-46 (322)
155 1nks_A Adenylate kinase; therm 98.3 2.1E-06 7E-11 84.8 9.1 36 518-553 2-42 (194)
156 3tr0_A Guanylate kinase, GMP k 98.2 4.1E-06 1.4E-10 83.8 11.1 26 517-542 7-32 (205)
157 3a8t_A Adenylate isopentenyltr 98.2 3.6E-07 1.2E-11 99.3 3.5 43 60-102 38-82 (339)
158 3crm_A TRNA delta(2)-isopenten 98.2 1.6E-06 5.6E-11 93.8 8.6 40 62-101 5-46 (323)
159 2plr_A DTMP kinase, probable t 98.2 3E-06 1E-10 85.1 9.9 27 62-88 4-30 (213)
160 1zd8_A GTP:AMP phosphotransfer 98.2 1.9E-06 6.5E-11 88.3 8.5 40 515-554 5-44 (227)
161 1m7g_A Adenylylsulfate kinase; 98.2 2.3E-06 7.8E-11 86.8 9.0 42 59-100 22-69 (211)
162 1ltq_A Polynucleotide kinase; 98.2 2.4E-06 8.4E-11 91.2 9.2 114 62-191 2-128 (301)
163 3be4_A Adenylate kinase; malar 98.2 2.3E-06 7.9E-11 87.2 8.4 40 516-555 4-43 (217)
164 2vp4_A Deoxynucleoside kinase; 98.2 7.2E-07 2.5E-11 92.0 4.1 62 165-226 143-208 (230)
165 3a4m_A L-seryl-tRNA(SEC) kinas 98.2 4.5E-06 1.5E-10 87.7 10.2 105 516-650 3-121 (260)
166 2xb4_A Adenylate kinase; ATP-b 98.2 3.8E-06 1.3E-10 86.1 9.3 116 519-650 2-127 (223)
167 2wwf_A Thymidilate kinase, put 98.2 3.5E-06 1.2E-10 84.9 8.7 36 516-551 9-44 (212)
168 3iij_A Coilin-interacting nucl 98.2 2.2E-06 7.5E-11 84.4 7.1 105 516-650 10-118 (180)
169 3lnc_A Guanylate kinase, GMP k 98.2 3E-06 1E-10 87.1 8.3 27 62-88 27-54 (231)
170 1via_A Shikimate kinase; struc 98.1 8.2E-07 2.8E-11 87.1 3.5 36 519-554 6-41 (175)
171 1nn5_A Similar to deoxythymidy 98.1 4.7E-06 1.6E-10 84.0 9.2 28 61-88 8-35 (215)
172 3zvl_A Bifunctional polynucleo 98.1 4.9E-06 1.7E-10 93.6 10.0 94 60-191 256-359 (416)
173 3tau_A Guanylate kinase, GMP k 98.1 1.6E-06 5.3E-11 88.0 5.4 28 60-87 6-33 (208)
174 2z0h_A DTMP kinase, thymidylat 98.1 5.4E-06 1.8E-10 82.3 9.3 32 519-550 2-36 (197)
175 1e4v_A Adenylate kinase; trans 98.1 4.7E-06 1.6E-10 84.6 8.6 36 519-554 2-37 (214)
176 3sr0_A Adenylate kinase; phosp 98.1 2.2E-06 7.6E-11 87.1 6.0 113 64-190 2-125 (206)
177 2ze6_A Isopentenyl transferase 98.1 9.3E-06 3.2E-10 85.0 10.5 35 518-552 2-36 (253)
178 1zak_A Adenylate kinase; ATP:A 98.1 1.7E-06 5.7E-11 88.4 4.3 40 515-554 3-42 (222)
179 2gks_A Bifunctional SAT/APS ki 98.1 2.4E-06 8.2E-11 99.4 6.1 118 48-186 357-487 (546)
180 1gvn_B Zeta; postsegregational 98.1 4.5E-06 1.5E-10 89.2 7.3 40 60-99 31-72 (287)
181 3umf_A Adenylate kinase; rossm 98.1 1.1E-05 3.7E-10 82.7 9.7 124 513-650 25-154 (217)
182 3a00_A Guanylate kinase, GMP k 98.1 5.4E-06 1.8E-10 82.4 7.3 25 518-542 2-26 (186)
183 1ak2_A Adenylate kinase isoenz 98.0 8.4E-06 2.9E-10 84.0 8.5 40 515-554 14-53 (233)
184 3nwj_A ATSK2; P loop, shikimat 98.0 4.7E-06 1.6E-10 87.3 6.5 37 518-554 49-85 (250)
185 2p5t_B PEZT; postsegregational 98.0 8.6E-06 3E-10 85.1 8.5 40 60-99 30-71 (253)
186 1nn5_A Similar to deoxythymidy 98.0 2.2E-05 7.4E-10 79.0 10.7 37 515-551 7-43 (215)
187 1ltq_A Polynucleotide kinase; 98.0 7E-06 2.4E-10 87.6 7.4 114 517-651 2-128 (301)
188 3gmt_A Adenylate kinase; ssgci 98.0 1.1E-05 3.8E-10 83.2 8.5 120 516-651 7-133 (230)
189 1qhx_A CPT, protein (chloramph 98.0 1.4E-05 4.7E-10 78.2 8.2 37 517-553 3-41 (178)
190 2pez_A Bifunctional 3'-phospho 98.0 1.6E-05 5.5E-10 78.1 8.7 35 516-550 4-41 (179)
191 2plr_A DTMP kinase, probable t 98.0 2.4E-05 8.4E-10 78.3 10.2 28 516-543 3-30 (213)
192 3uie_A Adenylyl-sulfate kinase 97.9 6.3E-05 2.1E-09 75.4 12.7 40 514-553 22-66 (200)
193 3sr0_A Adenylate kinase; phosp 97.9 1.3E-05 4.5E-10 81.4 7.5 114 519-650 2-125 (206)
194 3eph_A TRNA isopentenyltransfe 97.9 3.1E-06 1.1E-10 94.0 2.6 41 62-102 2-44 (409)
195 4eaq_A DTMP kinase, thymidylat 97.9 5.9E-05 2E-09 77.7 12.1 154 59-226 23-208 (229)
196 3tau_A Guanylate kinase, GMP k 97.9 1E-05 3.5E-10 81.9 6.1 28 515-542 6-33 (208)
197 3lnc_A Guanylate kinase, GMP k 97.8 2.2E-05 7.7E-10 80.5 7.4 26 517-542 27-53 (231)
198 1kgd_A CASK, peripheral plasma 97.8 2E-05 6.9E-10 77.8 6.6 25 518-542 6-30 (180)
199 2vli_A Antibiotic resistance p 97.8 3.9E-05 1.3E-09 75.2 7.7 31 516-546 4-34 (183)
200 1m8p_A Sulfate adenylyltransfe 97.8 4.8E-05 1.6E-09 88.9 9.7 41 60-100 394-440 (573)
201 1x6v_B Bifunctional 3'-phospho 97.8 3.9E-05 1.3E-09 90.1 8.8 34 61-94 51-87 (630)
202 3ch4_B Pmkase, phosphomevalona 97.8 7.8E-05 2.7E-09 75.2 9.6 146 60-227 9-174 (202)
203 4eaq_A DTMP kinase, thymidylat 97.7 0.00021 7.3E-09 73.5 13.0 28 515-542 24-51 (229)
204 3zvl_A Bifunctional polynucleo 97.7 5.8E-05 2E-09 84.8 9.3 37 515-551 256-292 (416)
205 1ex7_A Guanylate kinase; subst 97.7 9.7E-05 3.3E-09 73.8 9.7 22 65-86 4-25 (186)
206 2p5t_B PEZT; postsegregational 97.7 6.2E-05 2.1E-09 78.6 7.8 40 514-553 29-70 (253)
207 1kgd_A CASK, peripheral plasma 97.7 1.4E-05 4.9E-10 78.9 2.4 25 63-87 6-30 (180)
208 2bdt_A BH3686; alpha-beta prot 97.6 8.3E-05 2.8E-09 73.5 7.9 37 63-99 3-40 (189)
209 2ocp_A DGK, deoxyguanosine kin 97.6 1.3E-05 4.4E-10 83.0 1.5 48 628-677 149-196 (241)
210 1kag_A SKI, shikimate kinase I 97.6 1.7E-05 5.7E-10 77.2 2.2 37 517-553 4-40 (173)
211 1ex7_A Guanylate kinase; subst 97.6 0.00016 5.5E-09 72.1 9.2 125 520-649 4-134 (186)
212 1gtv_A TMK, thymidylate kinase 97.6 1.2E-05 4.2E-10 80.9 0.8 24 519-542 2-25 (214)
213 3ch4_B Pmkase, phosphomevalona 97.6 0.00017 5.8E-09 72.7 9.0 118 515-646 9-144 (202)
214 1m7g_A Adenylylsulfate kinase; 97.5 0.00013 4.4E-09 73.7 6.9 39 514-552 22-66 (211)
215 2axn_A 6-phosphofructo-2-kinas 97.4 0.00038 1.3E-08 80.4 10.7 41 60-100 33-78 (520)
216 2gks_A Bifunctional SAT/APS ki 97.4 0.00018 6.3E-09 83.5 7.9 107 515-647 370-488 (546)
217 1gvn_B Zeta; postsegregational 97.4 0.00014 4.9E-09 77.4 6.5 41 514-554 30-72 (287)
218 2yvu_A Probable adenylyl-sulfa 97.4 0.00025 8.5E-09 69.9 7.7 37 515-551 11-52 (186)
219 1s96_A Guanylate kinase, GMP k 97.3 0.001 3.5E-08 68.0 11.7 34 54-87 8-41 (219)
220 3cr8_A Sulfate adenylyltranfer 97.3 0.00019 6.6E-09 83.3 6.9 39 60-98 367-411 (552)
221 3exa_A TRNA delta(2)-isopenten 97.3 9.1E-05 3.1E-09 79.6 3.8 38 517-554 3-42 (322)
222 2ocp_A DGK, deoxyguanosine kin 97.3 0.0014 4.8E-08 67.5 12.1 47 168-214 149-196 (241)
223 2v54_A DTMP kinase, thymidylat 97.3 0.00012 3.9E-09 73.1 3.5 35 61-95 3-38 (204)
224 3v9p_A DTMP kinase, thymidylat 97.3 0.00014 4.8E-09 74.9 4.1 59 167-226 150-210 (227)
225 3foz_A TRNA delta(2)-isopenten 97.3 0.00015 5.1E-09 77.8 4.3 40 515-554 8-49 (316)
226 3eph_A TRNA isopentenyltransfe 97.2 0.00014 4.6E-09 80.9 3.9 38 517-554 2-41 (409)
227 3crm_A TRNA delta(2)-isopenten 97.2 0.00014 4.9E-09 78.6 3.7 35 517-551 5-39 (323)
228 1x6v_B Bifunctional 3'-phospho 97.2 0.00055 1.9E-08 80.3 8.8 34 516-549 51-87 (630)
229 3hjn_A DTMP kinase, thymidylat 97.2 0.00077 2.6E-08 67.7 8.1 30 64-93 2-34 (197)
230 3ld9_A DTMP kinase, thymidylat 97.2 0.00047 1.6E-08 70.7 6.6 29 60-88 19-47 (223)
231 3lv8_A DTMP kinase, thymidylat 97.1 0.00068 2.3E-08 70.2 7.6 57 168-226 154-212 (236)
232 3a8t_A Adenylate isopentenyltr 97.1 0.00017 6E-09 78.3 3.1 36 516-551 39-74 (339)
233 2bbw_A Adenylate kinase 4, AK4 97.1 0.0002 6.7E-09 74.2 3.3 38 61-98 26-63 (246)
234 4edh_A DTMP kinase, thymidylat 97.1 0.002 6.9E-08 65.5 10.8 59 167-226 130-190 (213)
235 1zp6_A Hypothetical protein AT 97.1 0.00022 7.6E-09 70.3 3.3 38 61-98 8-47 (191)
236 2bbw_A Adenylate kinase 4, AK4 97.1 0.0002 6.9E-09 74.1 2.9 39 516-554 26-64 (246)
237 4tmk_A Protein (thymidylate ki 97.0 0.0038 1.3E-07 63.5 11.9 57 168-226 132-190 (213)
238 2v54_A DTMP kinase, thymidylat 97.0 0.00023 7.7E-09 70.9 2.7 35 516-550 3-38 (204)
239 4hlc_A DTMP kinase, thymidylat 97.0 0.0024 8.1E-08 64.6 9.5 29 63-91 3-33 (205)
240 3ld9_A DTMP kinase, thymidylat 96.9 0.00043 1.5E-08 71.1 3.7 160 514-689 18-200 (223)
241 1zp6_A Hypothetical protein AT 96.9 0.00032 1.1E-08 69.1 2.6 38 515-552 7-46 (191)
242 1lvg_A Guanylate kinase, GMP k 96.9 0.0027 9.2E-08 63.5 9.5 25 63-87 5-29 (198)
243 3lv8_A DTMP kinase, thymidylat 96.9 0.00092 3.1E-08 69.2 6.2 57 628-689 154-212 (236)
244 1dek_A Deoxynucleoside monopho 96.9 0.00049 1.7E-08 71.4 4.0 34 62-95 1-34 (241)
245 2bdt_A BH3686; alpha-beta prot 96.8 0.00048 1.6E-08 68.0 2.8 36 518-553 3-39 (189)
246 1m8p_A Sulfate adenylyltransfe 96.8 0.0011 3.6E-08 77.5 5.8 39 515-553 394-438 (573)
247 3ney_A 55 kDa erythrocyte memb 96.7 0.0025 8.5E-08 64.1 7.3 120 516-639 18-141 (197)
248 1g8f_A Sulfate adenylyltransfe 96.7 0.0016 5.3E-08 74.8 6.1 48 48-95 380-435 (511)
249 1bif_A 6-phosphofructo-2-kinas 96.6 0.0071 2.4E-07 68.8 10.7 36 60-95 37-72 (469)
250 3cf0_A Transitional endoplasmi 96.5 0.0032 1.1E-07 67.2 6.8 35 60-94 47-81 (301)
251 2qmh_A HPR kinase/phosphorylas 96.4 0.0018 6.3E-08 65.0 4.3 38 62-100 34-73 (205)
252 4hlc_A DTMP kinase, thymidylat 96.4 0.0037 1.3E-07 63.2 6.6 46 629-676 125-172 (205)
253 1dek_A Deoxynucleoside monopho 96.4 0.0016 5.6E-08 67.5 3.6 37 518-554 2-38 (241)
254 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0043 1.5E-07 64.0 6.6 31 62-92 39-69 (262)
255 1lv7_A FTSH; alpha/beta domain 96.3 0.0043 1.5E-07 64.2 6.6 32 62-93 45-76 (257)
256 4b4t_K 26S protease regulatory 96.3 0.0065 2.2E-07 68.2 8.4 60 36-95 166-239 (428)
257 1g8f_A Sulfate adenylyltransfe 96.3 0.0029 9.9E-08 72.6 5.6 59 488-550 369-435 (511)
258 3h4m_A Proteasome-activating n 96.3 0.0043 1.5E-07 65.1 6.5 34 60-93 49-82 (285)
259 4b4t_J 26S protease regulatory 96.2 0.0075 2.6E-07 67.0 7.6 59 37-95 143-215 (405)
260 1ye8_A Protein THEP1, hypothet 96.1 0.0023 8E-08 63.1 3.1 24 519-542 2-25 (178)
261 4b4t_I 26S protease regulatory 96.1 0.0093 3.2E-07 66.6 8.2 60 36-95 176-249 (437)
262 4b4t_M 26S protease regulatory 96.1 0.008 2.7E-07 67.6 7.4 60 36-95 175-248 (434)
263 4b4t_L 26S protease subunit RP 96.1 0.0076 2.6E-07 67.8 7.1 59 36-94 175-247 (437)
264 1ye8_A Protein THEP1, hypothet 96.0 0.0031 1.1E-07 62.2 3.3 25 64-88 2-26 (178)
265 3b9p_A CG5977-PA, isoform A; A 96.0 0.0078 2.7E-07 63.6 6.6 33 61-93 53-85 (297)
266 1gtv_A TMK, thymidylate kinase 96.0 0.0015 5.2E-08 65.3 1.0 24 64-87 2-25 (214)
267 1p5z_B DCK, deoxycytidine kina 96.0 0.0022 7.4E-08 67.0 2.1 33 60-92 22-55 (263)
268 1xjc_A MOBB protein homolog; s 96.0 0.0036 1.2E-07 61.4 3.5 26 516-541 3-28 (169)
269 1znw_A Guanylate kinase, GMP k 95.9 0.0037 1.3E-07 62.8 3.5 26 517-542 20-45 (207)
270 2qmh_A HPR kinase/phosphorylas 95.9 0.0032 1.1E-07 63.2 2.9 36 517-553 34-69 (205)
271 4gp7_A Metallophosphoesterase; 95.9 0.0027 9.4E-08 61.8 2.4 34 61-96 8-41 (171)
272 1xjc_A MOBB protein homolog; s 95.9 0.0041 1.4E-07 60.9 3.6 26 61-86 3-28 (169)
273 1znw_A Guanylate kinase, GMP k 95.9 0.0041 1.4E-07 62.4 3.6 26 62-87 20-45 (207)
274 1lvg_A Guanylate kinase, GMP k 95.9 0.0033 1.1E-07 62.8 2.8 25 518-542 5-29 (198)
275 3eie_A Vacuolar protein sortin 95.9 0.01 3.6E-07 63.8 6.9 56 38-93 14-82 (322)
276 3t15_A Ribulose bisphosphate c 95.8 0.0041 1.4E-07 66.2 3.6 36 514-549 33-68 (293)
277 4b4t_H 26S protease regulatory 95.8 0.012 4.2E-07 66.3 7.3 58 37-94 204-275 (467)
278 1ixz_A ATP-dependent metallopr 95.8 0.0092 3.2E-07 61.6 5.9 29 65-93 52-80 (254)
279 4gp7_A Metallophosphoesterase; 95.8 0.0042 1.4E-07 60.5 3.0 32 516-549 8-39 (171)
280 1z6g_A Guanylate kinase; struc 95.7 0.0042 1.5E-07 63.1 2.9 26 516-541 22-47 (218)
281 1s96_A Guanylate kinase, GMP k 95.7 0.0052 1.8E-07 62.7 3.5 27 516-542 15-41 (219)
282 1z6g_A Guanylate kinase; struc 95.7 0.0044 1.5E-07 62.9 2.9 26 61-86 22-47 (218)
283 3ney_A 55 kDa erythrocyte memb 95.6 0.0058 2E-07 61.3 3.6 26 62-87 19-44 (197)
284 3t15_A Ribulose bisphosphate c 95.6 0.0053 1.8E-07 65.3 3.5 34 60-93 34-67 (293)
285 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.015 5.1E-07 62.7 7.1 55 38-92 8-76 (322)
286 1svm_A Large T antigen; AAA+ f 95.6 0.014 5E-07 64.4 7.0 41 52-92 159-199 (377)
287 2axn_A 6-phosphofructo-2-kinas 95.6 0.0048 1.7E-07 71.1 3.2 39 515-553 33-76 (520)
288 1htw_A HI0065; nucleotide-bind 95.6 0.0066 2.3E-07 58.7 3.6 27 515-541 31-57 (158)
289 3ec2_A DNA replication protein 95.6 0.016 5.6E-07 56.3 6.5 38 504-541 23-62 (180)
290 1jbk_A CLPB protein; beta barr 95.6 0.017 5.7E-07 55.6 6.4 25 62-86 43-67 (195)
291 1p5z_B DCK, deoxycytidine kina 95.6 0.0031 1E-07 65.8 1.2 33 515-547 22-55 (263)
292 3pfi_A Holliday junction ATP-d 95.5 0.017 5.8E-07 62.1 7.0 34 60-93 53-86 (338)
293 1svm_A Large T antigen; AAA+ f 95.5 0.014 4.7E-07 64.6 6.2 41 507-547 159-199 (377)
294 2x8a_A Nuclear valosin-contain 95.5 0.0089 3.1E-07 63.0 4.5 30 65-94 47-76 (274)
295 1htw_A HI0065; nucleotide-bind 95.5 0.008 2.7E-07 58.1 3.7 27 60-86 31-57 (158)
296 3cf0_A Transitional endoplasmi 95.5 0.011 3.8E-07 63.0 5.1 35 515-549 47-81 (301)
297 1iy2_A ATP-dependent metallopr 95.4 0.019 6.5E-07 60.2 6.9 29 65-93 76-104 (278)
298 2i3b_A HCR-ntpase, human cance 95.4 0.0069 2.4E-07 60.3 3.3 32 519-553 3-37 (189)
299 2f1r_A Molybdopterin-guanine d 95.4 0.004 1.4E-07 61.1 1.4 24 63-86 3-26 (171)
300 3u61_B DNA polymerase accessor 95.4 0.014 4.9E-07 62.4 5.8 55 40-94 24-80 (324)
301 3d8b_A Fidgetin-like protein 1 95.4 0.018 6.1E-07 63.0 6.7 32 61-92 116-147 (357)
302 2p65_A Hypothetical protein PF 95.4 0.016 5.3E-07 55.8 5.6 25 62-86 43-67 (187)
303 3ec2_A DNA replication protein 95.4 0.02 6.8E-07 55.7 6.3 25 62-86 38-62 (180)
304 1rj9_A FTSY, signal recognitio 95.4 0.0084 2.9E-07 64.3 3.8 26 516-541 101-126 (304)
305 2x8a_A Nuclear valosin-contain 95.4 0.0078 2.7E-07 63.4 3.5 30 520-549 47-76 (274)
306 1tue_A Replication protein E1; 95.4 0.019 6.4E-07 58.0 6.1 45 504-548 45-89 (212)
307 1np6_A Molybdopterin-guanine d 95.4 0.0091 3.1E-07 58.7 3.7 26 61-86 5-30 (174)
308 1in4_A RUVB, holliday junction 95.3 0.016 5.4E-07 62.8 6.0 30 61-90 50-79 (334)
309 2kjq_A DNAA-related protein; s 95.3 0.0092 3.2E-07 56.9 3.6 26 61-86 35-60 (149)
310 1d2n_A N-ethylmaleimide-sensit 95.3 0.025 8.4E-07 59.0 7.2 34 60-93 62-95 (272)
311 3u61_B DNA polymerase accessor 95.3 0.015 5.2E-07 62.2 5.7 45 504-548 35-79 (324)
312 3p32_A Probable GTPase RV1496/ 95.3 0.022 7.5E-07 62.3 7.0 39 57-95 74-117 (355)
313 1tue_A Replication protein E1; 95.3 0.018 6.1E-07 58.2 5.7 45 48-92 44-88 (212)
314 2f1r_A Molybdopterin-guanine d 95.3 0.0055 1.9E-07 60.1 1.9 24 518-541 3-26 (171)
315 3b9q_A Chloroplast SRP recepto 95.3 0.016 5.5E-07 62.0 5.6 26 61-86 99-124 (302)
316 3e70_C DPA, signal recognition 95.3 0.011 3.8E-07 64.1 4.4 28 514-541 126-153 (328)
317 3e70_C DPA, signal recognition 95.3 0.016 5.4E-07 62.8 5.6 27 60-86 127-153 (328)
318 3tif_A Uncharacterized ABC tra 95.2 0.0071 2.4E-07 62.3 2.7 24 518-541 32-55 (235)
319 1rj9_A FTSY, signal recognitio 95.2 0.013 4.6E-07 62.7 4.9 26 61-86 101-126 (304)
320 1vma_A Cell division protein F 95.2 0.013 4.5E-07 62.8 4.8 37 61-97 103-144 (306)
321 1np6_A Molybdopterin-guanine d 95.2 0.01 3.6E-07 58.3 3.6 25 517-541 6-30 (174)
322 3pfi_A Holliday junction ATP-d 95.2 0.017 5.7E-07 62.2 5.6 35 515-549 53-87 (338)
323 1njg_A DNA polymerase III subu 95.2 0.02 6.8E-07 57.1 5.9 40 48-87 31-70 (250)
324 1lv7_A FTSH; alpha/beta domain 95.2 0.011 3.8E-07 61.1 4.1 32 517-548 45-76 (257)
325 1vma_A Cell division protein F 95.2 0.011 3.8E-07 63.4 4.1 27 515-541 102-128 (306)
326 1njg_A DNA polymerase III subu 95.2 0.022 7.7E-07 56.8 6.2 32 511-542 39-70 (250)
327 2w58_A DNAI, primosome compone 95.2 0.019 6.6E-07 56.8 5.5 24 518-541 55-78 (202)
328 1jbk_A CLPB protein; beta barr 95.2 0.02 6.8E-07 55.1 5.5 26 516-541 42-67 (195)
329 2r62_A Cell division protease 95.1 0.0065 2.2E-07 63.1 2.1 30 64-93 46-75 (268)
330 2eyu_A Twitching motility prot 95.1 0.01 3.5E-07 62.2 3.6 26 516-541 24-49 (261)
331 3tif_A Uncharacterized ABC tra 95.1 0.0089 3E-07 61.6 2.8 25 62-86 31-55 (235)
332 2qp9_X Vacuolar protein sortin 95.1 0.019 6.3E-07 62.9 5.5 31 63-93 85-115 (355)
333 2eyu_A Twitching motility prot 95.1 0.015 5E-07 61.0 4.4 27 60-86 23-49 (261)
334 1c9k_A COBU, adenosylcobinamid 95.0 0.008 2.7E-07 59.5 2.2 26 64-90 1-26 (180)
335 1c9k_A COBU, adenosylcobinamid 95.0 0.0058 2E-07 60.5 1.2 26 519-545 1-26 (180)
336 2ehv_A Hypothetical protein PH 95.0 0.01 3.5E-07 60.5 3.2 22 517-538 30-51 (251)
337 2v9p_A Replication protein E1; 95.0 0.025 8.4E-07 60.7 6.2 35 57-91 121-155 (305)
338 1in4_A RUVB, holliday junction 95.0 0.02 7E-07 61.9 5.6 30 515-544 49-78 (334)
339 3b9q_A Chloroplast SRP recepto 95.0 0.014 4.6E-07 62.6 4.1 26 516-541 99-124 (302)
340 3p32_A Probable GTPase RV1496/ 95.0 0.02 6.9E-07 62.5 5.6 35 507-541 69-103 (355)
341 4a74_A DNA repair and recombin 95.0 0.011 3.8E-07 59.4 3.2 26 516-541 24-49 (231)
342 1l8q_A Chromosomal replication 95.0 0.026 8.9E-07 60.4 6.2 25 62-86 37-61 (324)
343 2pcj_A ABC transporter, lipopr 95.0 0.0086 2.9E-07 61.2 2.3 24 518-541 31-54 (224)
344 1sxj_A Activator 1 95 kDa subu 95.0 0.022 7.6E-07 65.5 6.0 33 62-94 77-109 (516)
345 2p65_A Hypothetical protein PF 95.0 0.024 8.3E-07 54.4 5.4 25 517-541 43-67 (187)
346 2onk_A Molybdate/tungstate ABC 94.9 0.011 3.9E-07 61.0 3.2 24 518-541 25-48 (240)
347 2og2_A Putative signal recogni 94.9 0.022 7.7E-07 62.4 5.6 26 61-86 156-181 (359)
348 3dm5_A SRP54, signal recogniti 94.9 0.014 4.9E-07 65.6 4.2 38 516-553 99-141 (443)
349 3kl4_A SRP54, signal recogniti 94.9 0.014 4.8E-07 65.6 4.0 36 516-551 96-136 (433)
350 2i3b_A HCR-ntpase, human cance 94.9 0.013 4.3E-07 58.4 3.3 23 64-86 3-25 (189)
351 2kjq_A DNAA-related protein; s 94.9 0.01 3.5E-07 56.6 2.5 25 517-541 36-60 (149)
352 2qz4_A Paraplegin; AAA+, SPG7, 94.9 0.015 5.1E-07 59.9 3.9 32 516-547 38-69 (262)
353 1ixz_A ATP-dependent metallopr 94.9 0.013 4.4E-07 60.5 3.5 29 520-548 52-80 (254)
354 3jvv_A Twitching mobility prot 94.9 0.019 6.4E-07 63.0 4.9 24 518-541 124-147 (356)
355 3gfo_A Cobalt import ATP-bindi 94.9 0.01 3.5E-07 62.7 2.6 24 518-541 35-58 (275)
356 2chg_A Replication factor C sm 94.9 0.03 1E-06 55.2 5.9 38 48-86 25-62 (226)
357 3bos_A Putative DNA replicatio 94.9 0.027 9.1E-07 56.7 5.6 49 47-96 38-91 (242)
358 4a74_A DNA repair and recombin 94.9 0.013 4.5E-07 58.9 3.3 25 61-85 24-48 (231)
359 3h4m_A Proteasome-activating n 94.9 0.022 7.5E-07 59.6 5.1 33 515-547 49-81 (285)
360 4g1u_C Hemin import ATP-bindin 94.8 0.011 3.6E-07 62.2 2.6 24 518-541 38-61 (266)
361 1bif_A 6-phosphofructo-2-kinas 94.8 0.011 3.7E-07 67.2 2.9 38 515-552 37-74 (469)
362 2ehv_A Hypothetical protein PH 94.8 0.014 4.7E-07 59.6 3.4 22 62-83 30-51 (251)
363 3dm5_A SRP54, signal recogniti 94.8 0.021 7.1E-07 64.3 5.1 38 61-98 99-141 (443)
364 2pcj_A ABC transporter, lipopr 94.8 0.011 3.6E-07 60.5 2.5 24 63-86 31-54 (224)
365 2onk_A Molybdate/tungstate ABC 94.8 0.014 4.8E-07 60.4 3.4 24 63-86 25-48 (240)
366 2zan_A Vacuolar protein sortin 94.8 0.036 1.2E-06 62.5 7.0 56 37-92 129-198 (444)
367 1ofh_A ATP-dependent HSL prote 94.8 0.028 9.4E-07 59.2 5.7 35 62-96 50-86 (310)
368 2chg_A Replication factor C sm 94.8 0.035 1.2E-06 54.7 6.1 22 520-541 41-62 (226)
369 2cbz_A Multidrug resistance-as 94.8 0.012 3.9E-07 60.8 2.7 24 518-541 32-55 (237)
370 3hws_A ATP-dependent CLP prote 94.8 0.018 6E-07 63.0 4.3 34 62-95 51-84 (363)
371 3cr8_A Sulfate adenylyltranfer 94.7 0.0081 2.8E-07 69.7 1.6 37 515-551 367-409 (552)
372 2og2_A Putative signal recogni 94.7 0.019 6.4E-07 63.0 4.3 26 516-541 156-181 (359)
373 3b85_A Phosphate starvation-in 94.7 0.011 3.8E-07 59.7 2.3 23 518-540 23-45 (208)
374 1d2n_A N-ethylmaleimide-sensit 94.7 0.045 1.5E-06 57.0 7.1 35 514-548 61-95 (272)
375 3b9p_A CG5977-PA, isoform A; A 94.7 0.017 5.7E-07 60.9 3.8 32 516-547 53-84 (297)
376 1b0u_A Histidine permease; ABC 94.7 0.012 4.1E-07 61.6 2.6 24 518-541 33-56 (262)
377 3gfo_A Cobalt import ATP-bindi 94.7 0.013 4.4E-07 61.9 2.9 24 63-86 35-58 (275)
378 4g1u_C Hemin import ATP-bindin 94.7 0.013 4.5E-07 61.5 2.9 25 62-86 37-61 (266)
379 2d2e_A SUFC protein; ABC-ATPas 94.7 0.015 5E-07 60.5 3.2 23 518-540 30-52 (250)
380 3b85_A Phosphate starvation-in 94.7 0.015 5E-07 58.9 3.1 23 63-85 23-45 (208)
381 3vfd_A Spastin; ATPase, microt 94.7 0.037 1.3E-06 61.0 6.7 57 38-94 111-180 (389)
382 3kl4_A SRP54, signal recogniti 94.7 0.022 7.4E-07 64.0 4.7 37 61-97 96-137 (433)
383 2v9p_A Replication protein E1; 94.7 0.026 8.9E-07 60.5 5.2 30 513-542 122-151 (305)
384 2ff7_A Alpha-hemolysin translo 94.6 0.013 4.4E-07 60.9 2.7 24 518-541 36-59 (247)
385 2cbz_A Multidrug resistance-as 94.6 0.014 4.7E-07 60.2 2.8 25 62-86 31-55 (237)
386 1mv5_A LMRA, multidrug resista 94.6 0.013 4.5E-07 60.6 2.6 25 517-541 28-52 (243)
387 3sop_A Neuronal-specific septi 94.6 0.018 6E-07 60.7 3.6 24 63-86 3-26 (270)
388 1ji0_A ABC transporter; ATP bi 94.6 0.014 4.6E-07 60.4 2.7 24 518-541 33-56 (240)
389 1g6h_A High-affinity branched- 94.6 0.014 4.6E-07 61.0 2.7 24 518-541 34-57 (257)
390 2ce7_A Cell division protein F 94.6 0.045 1.5E-06 62.3 7.1 31 63-93 50-80 (476)
391 1b0u_A Histidine permease; ABC 94.5 0.015 5.1E-07 60.9 2.9 26 61-86 31-56 (262)
392 3sop_A Neuronal-specific septi 94.5 0.018 6.1E-07 60.6 3.5 24 518-541 3-26 (270)
393 1zu4_A FTSY; GTPase, signal re 94.5 0.028 9.5E-07 60.7 5.1 37 60-96 103-144 (320)
394 2yhs_A FTSY, cell division pro 94.5 0.03 1E-06 63.8 5.5 27 60-86 291-317 (503)
395 2olj_A Amino acid ABC transpor 94.5 0.014 4.8E-07 61.2 2.6 24 518-541 51-74 (263)
396 2pze_A Cystic fibrosis transme 94.5 0.014 4.9E-07 59.7 2.6 24 518-541 35-58 (229)
397 3cf2_A TER ATPase, transitiona 94.5 0.029 9.8E-07 67.7 5.6 60 36-95 198-271 (806)
398 2d2e_A SUFC protein; ABC-ATPas 94.5 0.018 6.1E-07 59.9 3.4 23 63-85 30-52 (250)
399 3bos_A Putative DNA replicatio 94.5 0.033 1.1E-06 56.0 5.3 27 516-542 51-77 (242)
400 1mv5_A LMRA, multidrug resista 94.5 0.016 5.3E-07 60.0 2.9 27 60-86 26-52 (243)
401 1iy2_A ATP-dependent metallopr 94.5 0.018 6.2E-07 60.3 3.5 29 520-548 76-104 (278)
402 2ff7_A Alpha-hemolysin translo 94.5 0.015 5.3E-07 60.3 2.8 24 63-86 36-59 (247)
403 2r62_A Cell division protease 94.5 0.016 5.5E-07 60.1 3.0 32 517-548 44-75 (268)
404 3tqf_A HPR(Ser) kinase; transf 94.5 0.025 8.5E-07 55.5 4.1 33 63-96 17-49 (181)
405 1sgw_A Putative ABC transporte 94.5 0.012 4.3E-07 59.7 2.1 23 519-541 37-59 (214)
406 2zu0_C Probable ATP-dependent 94.5 0.017 5.8E-07 60.7 3.2 23 518-540 47-69 (267)
407 1vpl_A ABC transporter, ATP-bi 94.4 0.015 5.1E-07 60.7 2.6 24 518-541 42-65 (256)
408 1ji0_A ABC transporter; ATP bi 94.4 0.016 5.6E-07 59.7 2.8 25 62-86 32-56 (240)
409 1l8q_A Chromosomal replication 94.4 0.03 1E-06 59.9 5.0 24 518-541 38-61 (324)
410 2ghi_A Transport protein; mult 94.4 0.016 5.4E-07 60.7 2.7 24 518-541 47-70 (260)
411 1g6h_A High-affinity branched- 94.4 0.017 5.7E-07 60.3 2.8 25 62-86 33-57 (257)
412 2ixe_A Antigen peptide transpo 94.4 0.016 5.4E-07 61.1 2.7 24 518-541 46-69 (271)
413 2pze_A Cystic fibrosis transme 94.4 0.017 5.9E-07 59.1 2.9 24 63-86 35-58 (229)
414 2olj_A Amino acid ABC transpor 94.4 0.017 5.9E-07 60.6 2.9 26 61-86 49-74 (263)
415 1sxj_C Activator 1 40 kDa subu 94.4 0.045 1.5E-06 59.1 6.3 36 506-542 36-71 (340)
416 2px0_A Flagellar biosynthesis 94.3 0.024 8.1E-07 60.5 4.0 36 61-96 104-145 (296)
417 2zu0_C Probable ATP-dependent 94.3 0.02 7E-07 60.0 3.4 25 61-85 45-69 (267)
418 4edh_A DTMP kinase, thymidylat 94.3 0.026 8.9E-07 57.2 4.1 58 628-689 131-190 (213)
419 1sgw_A Putative ABC transporte 94.3 0.015 5.2E-07 59.0 2.3 24 63-86 36-59 (214)
420 2w58_A DNAI, primosome compone 94.3 0.047 1.6E-06 54.0 5.9 24 63-86 55-78 (202)
421 3hu3_A Transitional endoplasmi 94.3 0.044 1.5E-06 62.6 6.3 34 60-93 236-269 (489)
422 2yz2_A Putative ABC transporte 94.3 0.017 5.8E-07 60.6 2.7 24 518-541 34-57 (266)
423 2w0m_A SSO2452; RECA, SSPF, un 94.3 0.023 7.8E-07 57.0 3.6 25 517-541 23-47 (235)
424 1lw7_A Transcriptional regulat 94.3 0.021 7.2E-07 62.5 3.5 28 62-89 170-197 (365)
425 1vpl_A ABC transporter, ATP-bi 94.3 0.018 6.3E-07 60.1 2.9 25 62-86 41-65 (256)
426 2yhs_A FTSY, cell division pro 94.3 0.025 8.6E-07 64.4 4.2 27 515-541 291-317 (503)
427 2qi9_C Vitamin B12 import ATP- 94.3 0.017 5.9E-07 60.0 2.6 24 518-541 27-50 (249)
428 2ihy_A ABC transporter, ATP-bi 94.3 0.017 6E-07 61.0 2.6 24 518-541 48-71 (279)
429 1hqc_A RUVB; extended AAA-ATPa 94.3 0.044 1.5E-06 58.2 5.9 32 60-91 36-67 (324)
430 2ghi_A Transport protein; mult 94.2 0.019 6.4E-07 60.1 2.8 25 62-86 46-70 (260)
431 1g41_A Heat shock protein HSLU 94.2 0.027 9.3E-07 63.4 4.3 34 62-95 50-83 (444)
432 3v9p_A DTMP kinase, thymidylat 94.2 0.02 6.8E-07 58.8 2.9 58 628-689 151-210 (227)
433 2ixe_A Antigen peptide transpo 94.2 0.019 6.4E-07 60.5 2.8 26 61-86 44-69 (271)
434 2nq2_C Hypothetical ABC transp 94.2 0.018 6.2E-07 60.0 2.7 24 518-541 32-55 (253)
435 4b4t_K 26S protease regulatory 94.2 0.024 8.4E-07 63.5 3.9 36 514-549 203-238 (428)
436 1ofh_A ATP-dependent HSL prote 94.2 0.031 1.1E-06 58.8 4.5 31 517-547 50-80 (310)
437 1zu4_A FTSY; GTPase, signal re 94.2 0.028 9.7E-07 60.6 4.2 27 515-541 103-129 (320)
438 1um8_A ATP-dependent CLP prote 94.2 0.028 9.7E-07 61.6 4.3 33 62-94 72-104 (376)
439 1ypw_A Transitional endoplasmi 94.2 0.038 1.3E-06 67.0 5.8 35 60-94 236-270 (806)
440 3jvv_A Twitching mobility prot 94.2 0.025 8.5E-07 62.0 3.8 33 63-95 124-160 (356)
441 2wsm_A Hydrogenase expression/ 94.2 0.062 2.1E-06 53.7 6.4 27 60-86 28-54 (221)
442 3tmk_A Thymidylate kinase; pho 94.2 0.026 9.1E-07 57.4 3.7 28 61-88 4-31 (216)
443 2c9o_A RUVB-like 1; hexameric 94.1 0.056 1.9E-06 61.0 6.7 35 61-95 62-98 (456)
444 2qi9_C Vitamin B12 import ATP- 94.1 0.021 7.1E-07 59.4 2.9 24 63-86 27-50 (249)
445 1sxj_E Activator 1 40 kDa subu 94.1 0.025 8.5E-07 61.1 3.6 40 46-86 20-60 (354)
446 2yz2_A Putative ABC transporte 94.1 0.02 7E-07 60.0 2.8 25 62-86 33-57 (266)
447 2ihy_A ABC transporter, ATP-bi 94.1 0.021 7.1E-07 60.4 2.9 25 62-86 47-71 (279)
448 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.028 9.7E-07 56.3 3.8 25 62-86 23-47 (235)
449 3eie_A Vacuolar protein sortin 94.1 0.041 1.4E-06 59.1 5.2 32 517-548 51-82 (322)
450 3hws_A ATP-dependent CLP prote 94.1 0.024 8.3E-07 61.8 3.5 33 517-549 51-83 (363)
451 2dhr_A FTSH; AAA+ protein, hex 94.0 0.043 1.5E-06 62.8 5.5 31 64-94 66-96 (499)
452 1hqc_A RUVB; extended AAA-ATPa 94.0 0.043 1.5E-06 58.3 5.3 30 516-545 37-66 (324)
453 1sxj_A Activator 1 95 kDa subu 94.0 0.03 1E-06 64.4 4.2 32 517-548 77-108 (516)
454 2nq2_C Hypothetical ABC transp 94.0 0.022 7.6E-07 59.3 2.8 24 63-86 32-55 (253)
455 3fvq_A Fe(3+) IONS import ATP- 94.0 0.021 7.3E-07 62.5 2.8 24 518-541 31-54 (359)
456 3tui_C Methionine import ATP-b 94.0 0.024 8.1E-07 62.3 3.2 24 518-541 55-78 (366)
457 1lw7_A Transcriptional regulat 94.0 0.025 8.7E-07 61.9 3.4 26 518-543 171-196 (365)
458 3tqf_A HPR(Ser) kinase; transf 94.0 0.028 9.7E-07 55.1 3.2 34 519-553 18-51 (181)
459 2www_A Methylmalonic aciduria 93.9 0.054 1.8E-06 59.1 5.9 35 61-95 73-112 (349)
460 3syl_A Protein CBBX; photosynt 93.9 0.06 2E-06 56.9 6.0 27 60-86 65-91 (309)
461 3n70_A Transport activator; si 93.9 0.045 1.5E-06 51.5 4.5 23 64-86 26-48 (145)
462 4b4t_M 26S protease regulatory 93.9 0.031 1.1E-06 62.8 3.9 36 514-549 212-247 (434)
463 2qm8_A GTPase/ATPase; G protei 93.9 0.048 1.6E-06 59.2 5.3 29 513-541 51-79 (337)
464 3d8b_A Fidgetin-like protein 1 93.9 0.053 1.8E-06 59.2 5.7 32 516-547 116-147 (357)
465 2pjz_A Hypothetical protein ST 93.9 0.023 7.8E-07 59.6 2.6 23 519-541 32-54 (263)
466 2qm8_A GTPase/ATPase; G protei 93.9 0.055 1.9E-06 58.7 5.8 30 57-86 50-79 (337)
467 1sxj_E Activator 1 40 kDa subu 93.9 0.031 1.1E-06 60.3 3.8 26 515-541 35-60 (354)
468 3nh6_A ATP-binding cassette SU 93.9 0.019 6.5E-07 61.6 2.0 24 518-541 81-104 (306)
469 1sxj_C Activator 1 40 kDa subu 93.9 0.057 2E-06 58.3 5.9 41 46-87 31-71 (340)
470 2cvh_A DNA repair and recombin 93.9 0.028 9.7E-07 56.0 3.2 24 516-539 19-42 (220)
471 4b4t_L 26S protease subunit RP 93.8 0.032 1.1E-06 62.7 3.9 35 514-548 212-246 (437)
472 3tmk_A Thymidylate kinase; pho 93.8 0.033 1.1E-06 56.7 3.6 28 516-543 4-31 (216)
473 2px0_A Flagellar biosynthesis 93.8 0.028 9.7E-07 59.9 3.3 36 516-551 104-145 (296)
474 1jr3_A DNA polymerase III subu 93.8 0.06 2.1E-06 58.3 6.0 41 48-88 24-64 (373)
475 2z4s_A Chromosomal replication 93.8 0.074 2.5E-06 59.9 6.8 52 35-86 98-154 (440)
476 2c9o_A RUVB-like 1; hexameric 93.8 0.06 2E-06 60.8 6.1 34 516-549 62-97 (456)
477 3rlf_A Maltose/maltodextrin im 93.8 0.027 9.4E-07 62.1 3.2 24 518-541 30-53 (381)
478 2ewv_A Twitching motility prot 93.8 0.032 1.1E-06 61.5 3.6 26 516-541 135-160 (372)
479 2pjz_A Hypothetical protein ST 93.8 0.027 9.2E-07 59.1 2.9 25 62-86 30-54 (263)
480 3fvq_A Fe(3+) IONS import ATP- 93.7 0.027 9.2E-07 61.7 3.0 25 62-86 30-54 (359)
481 3tui_C Methionine import ATP-b 93.7 0.031 1E-06 61.4 3.4 26 61-86 53-78 (366)
482 1z47_A CYSA, putative ABC-tran 93.7 0.029 9.9E-07 61.4 3.2 24 518-541 42-65 (355)
483 3kta_A Chromosome segregation 93.7 0.035 1.2E-06 53.9 3.5 24 64-87 28-51 (182)
484 3kta_A Chromosome segregation 93.7 0.033 1.1E-06 54.1 3.3 24 519-542 28-51 (182)
485 2ewv_A Twitching motility prot 93.7 0.039 1.3E-06 60.7 4.2 27 60-86 134-160 (372)
486 2yyz_A Sugar ABC transporter, 93.7 0.029 1E-06 61.5 3.2 20 519-538 31-50 (359)
487 2hf9_A Probable hydrogenase ni 93.7 0.088 3E-06 52.7 6.5 27 60-86 36-62 (226)
488 2v3c_C SRP54, signal recogniti 93.6 0.025 8.6E-07 63.6 2.6 37 516-552 98-139 (432)
489 4b4t_J 26S protease regulatory 93.6 0.032 1.1E-06 61.9 3.4 36 514-549 179-214 (405)
490 3nh6_A ATP-binding cassette SU 93.6 0.021 7.2E-07 61.2 1.8 26 61-86 79-104 (306)
491 4fcw_A Chaperone protein CLPB; 93.6 0.044 1.5E-06 57.9 4.4 24 518-541 48-71 (311)
492 2it1_A 362AA long hypothetical 93.6 0.031 1E-06 61.4 3.2 20 519-538 31-50 (362)
493 2cvh_A DNA repair and recombin 93.6 0.037 1.3E-06 55.2 3.5 35 61-95 19-55 (220)
494 3rlf_A Maltose/maltodextrin im 93.6 0.033 1.1E-06 61.5 3.4 25 62-86 29-53 (381)
495 2qby_B CDC6 homolog 3, cell di 93.6 0.09 3.1E-06 57.1 6.9 27 60-86 43-69 (384)
496 1iqp_A RFCS; clamp loader, ext 93.6 0.083 2.8E-06 55.9 6.4 41 46-87 31-71 (327)
497 2v3c_C SRP54, signal recogniti 93.6 0.026 8.9E-07 63.5 2.5 39 61-99 98-141 (432)
498 1v43_A Sugar-binding transport 93.5 0.032 1.1E-06 61.5 3.2 20 519-538 39-58 (372)
499 1z47_A CYSA, putative ABC-tran 93.5 0.035 1.2E-06 60.8 3.4 24 63-86 42-65 (355)
500 1n0w_A DNA repair protein RAD5 93.5 0.034 1.2E-06 56.3 3.2 25 516-540 23-47 (243)
No 1
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.94 E-value=6.1e-27 Score=254.67 Aligned_cols=241 Identities=17% Similarity=0.219 Sum_probs=178.5
Q ss_pred cccccccceecccCCCCCCc--ccccCCCcccceecccCCCCc-chhhhhHHHHHHHHHH-------HH--cCCCCEEEe
Q 003460 454 MEPVLATWHFISSDPSHAGS--SVIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQAL-------LE--NKGLPVIVG 521 (818)
Q Consensus 454 ~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~~l-------~~--~~~~p~iIg 521 (818)
+.....+|+.+..+.+++|+ ++.+..++.+.+.+..+.+-| ++.+.+.+.....+.+ .. ..+.|++||
T Consensus 17 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iig 96 (321)
T 3tqc_A 17 LQFNRQQWGNFRKDTPLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIG 96 (321)
T ss_dssp EEEEHHHHTC------CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEE
T ss_pred eEECHHHHHHHhcCCCCCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEE
Confidence 45788999966666676666 566667777777664443433 3333333333222222 12 245789999
Q ss_pred eeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh----h-cccCCCcccccHHHHHHHHHHHhcCC-ceec
Q 003460 522 IGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----K-DFKYDDFSSLDLSLLSKNISDIRNGR-RTKV 588 (818)
Q Consensus 522 IsG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~----~-~~~~d~p~t~D~~ll~~~L~~L~~g~-~v~~ 588 (818)
|+||+||||||+++.|+..++ +.++++|+||.+... . ..+++.|+++|.+++.+.|..+++|+ .+.+
T Consensus 97 I~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~ 176 (321)
T 3tqc_A 97 IAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRI 176 (321)
T ss_dssp EECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEE
T ss_pred EECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhcccccccc
Confidence 999999999999999999875 567999999987432 1 12467899999999999999999999 8999
Q ss_pred ccccccccccCCCcceeeecCCcEEEEEecccchHh-----------hhhcCCEEEEEEcChhHHHHHHHhcCccccCcc
Q 003460 589 PIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPE-----------IRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF 657 (818)
Q Consensus 589 P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~-----------l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~ 657 (818)
|.||+.++++.+. .+....+.+|||+||++++++. +.+.+|++|||+++.++++.|++.||...+|..
T Consensus 177 P~yd~~~~~r~~~-~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a 255 (321)
T 3tqc_A 177 PVYSHHYYDIVRG-QYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTT 255 (321)
T ss_dssp EEEETTTTEEEEE-EEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTG
T ss_pred chhhhhccccccC-ceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhh
Confidence 9999999998742 3444567899999999999844 889999999999999999999999998877632
Q ss_pred cc---------------h------hhHHHhhcchhhhhccccCCcccEEEeCCCCCccC
Q 003460 658 MS---------------Q------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLS 695 (818)
Q Consensus 658 ~~---------------~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~~l~ 695 (818)
.. + .+|.....|.+++||.|++.+||+||+.+-+....
T Consensus 256 ~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~~v~ 314 (321)
T 3tqc_A 256 FKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADHSIQ 314 (321)
T ss_dssp GGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTSCEE
T ss_pred ccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCCcEE
Confidence 11 0 12223346999999999999999999887666443
No 2
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=99.88 E-value=4.3e-23 Score=206.44 Aligned_cols=128 Identities=12% Similarity=0.119 Sum_probs=114.4
Q ss_pred ccccccccceeeccCCCCCcchhhhccCCeeeEeeeC--CEEEEEEcceeecCCCcccCceeEEEEec----cHHHHHHh
Q 003460 253 FQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLLD 326 (818)
Q Consensus 253 ~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~--~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~~ 326 (818)
+.....|.|+|||+|.++++.++.++ |||..+ ++..+|||||+.+ .+.|+.| +|.++|..
T Consensus 35 ~~~~~~q~d~yfd~p~~~l~~~~~~l-----RiR~~~~~~~~~~t~Kgp~~~---------~~~e~~v~d~~~~~~iL~~ 100 (179)
T 3ghx_A 35 FTLNNHEKDIYLDANGQDLAKQQISM-----VLREMNPSGIRLWIVKGPGAE---------RCEASNIEDVSKVQSMLAT 100 (179)
T ss_dssp EEEEEEEEEEEEECTTCTTGGGTCEE-----EEEEEETTCCEEEEEECSSSS---------BEEEEECSCHHHHHHHHHH
T ss_pred ccCcceEEEEEEeCCCccHHHCCcEE-----EEEEecCCCcEEEEEecCCCC---------cEEEEEcCCHHHHHHHHHH
Confidence 56778899999999999999999988 999873 6789999998753 2457777 89999999
Q ss_pred cCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--CH-------HHHHHHHHHcCCCCCc-cchhHHHHHH
Q 003460 327 LGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGINGPW-ITKSYLEMVL 395 (818)
Q Consensus 327 LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~~-------~~i~~~~~~Lgl~~~~-~~~sYlel~l 395 (818)
|||.++++++|.|++|.+++++|+||+|+|||. |+|||.+ ++ +.+.+++++|||+.+. +++||++|++
T Consensus 101 LG~~~~~~v~K~R~~y~~~~~~i~LD~v~glG~-f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~sY~eLl~ 178 (179)
T 3ghx_A 101 LGYHPAFTIEKQRSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLLG 178 (179)
T ss_dssp TTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHHT
T ss_pred CCCcEEEEEEEEEEEEEECCEEEEEEccCCCcc-EEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehhHHHHhh
Confidence 999999999999999999999999999999998 9999987 22 7889999999999865 9999999985
No 3
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.88 E-value=2.8e-22 Score=217.99 Aligned_cols=198 Identities=15% Similarity=0.178 Sum_probs=161.0
Q ss_pred cccCCcccccch---hhHHHHHHHHHHH--------------H--hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----
Q 003460 32 LQSLPVHASFDH---GYYLLVKSIQELR--------------E--KKGGIVTVGIGGPSGSGKTSLAEKLASVIG----- 87 (818)
Q Consensus 32 ~~~~~~~~s~~~---~~~~l~~~i~~~~--------------~--~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg----- 87 (818)
++++++.+|.++ +|.++++.+.... + ....+++|||+|++||||||+++.|+..++
T Consensus 43 ~~~~~~~~~~~~v~~~y~pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~ 122 (321)
T 3tqc_A 43 LQGQIEIVSLKEVTEIYLPLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDH 122 (321)
T ss_dssp TTTTHHHHCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTC
T ss_pred hhCCCCCcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCC
Confidence 678889999876 8999998885433 1 124578999999999999999999999874
Q ss_pred --CeEEeccceecc---------cccCCCCCcccHHHHHHHHHhhhcCC-ccccccchhhhhccccccccccCCccEEEE
Q 003460 88 --CTLISMENYRVG---------VDEGNDLDSIDFDALVQNLQDLTEGK-DTLIPMFDYQQKNRIGSKVIKGASSGVVIV 155 (818)
Q Consensus 88 --~~vI~~D~~~~~---------~~~~~~~~~~d~~~l~~~L~~l~~~~-~i~~p~~d~~~~~~~~~~~~~~~~~~vVIv 155 (818)
+.++++|+||.. ....+.|+++|.+.+.+.|..+..|+ .+.+|.|++..+++...........+++|+
T Consensus 123 ~~v~~i~~D~f~~~~~~l~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIv 202 (321)
T 3tqc_A 123 PNVEVITTDGFLYSNAKLEKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVIL 202 (321)
T ss_dssp CCEEEEEGGGGBCCHHHHHHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEE
T ss_pred CeEEEEeecccccchhhhhhHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEE
Confidence 577999999752 12356789999999999999999998 899999999999987544445566789999
Q ss_pred Eecccchhh-----------hhcCCCEEEEEEcCHHHHHHHHHHhccCCC----------------cCHHHHHH---h--
Q 003460 156 DGTYALDAR-----------LRSLLDIRVAVVGGVHFSLISKVQYDIGDS----------------CSLDSLID---S-- 203 (818)
Q Consensus 156 EG~~l~~~~-----------l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~----------------~s~e~~~~---~-- 203 (818)
||+++++.. +.+++|++|||+++.++++.|++.||...+ .+.+++.+ .
T Consensus 203 EGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w 282 (321)
T 3tqc_A 203 EGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVW 282 (321)
T ss_dssp ECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHH
T ss_pred EccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999854 889999999999999999999999994321 23333332 1
Q ss_pred ---hchhhhhccCCccccCcEEEECCCCC
Q 003460 204 ---IFPLFRKHIEPDLHHAQIRINNRFVS 229 (818)
Q Consensus 204 ---~~p~~~~~Iep~~~~ADiII~N~~~~ 229 (818)
..|+++++|.|++.+||+|++.+-..
T Consensus 283 ~~~~~pn~~~~I~ptr~~Adlil~~g~~~ 311 (321)
T 3tqc_A 283 NEINKVNLMENILPYKNRAQLILEKAADH 311 (321)
T ss_dssp HHTHHHHHHHHTGGGGGGCSEEEEECTTS
T ss_pred HhccccCHHHhCccCccCceEEEecCCCC
Confidence 26899999999999999999877543
No 4
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=99.87 E-value=3.6e-22 Score=199.69 Aligned_cols=135 Identities=18% Similarity=0.264 Sum_probs=115.7
Q ss_pred ccccccccccccceeeccCCCCCcchhhhccCCeeeEee--eCCEEEEEEcceeecCCCcccCceeEEEEec----cHHH
Q 003460 249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQ--SGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLG 322 (818)
Q Consensus 249 ~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~--~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~ 322 (818)
.++.+.....|.|.||+.|++ .|||||. .+++..||||||. + +.. +.+.|+|+.| .|.+
T Consensus 29 lg~~~~~~~~Q~d~Yfd~p~~-----------~~LRIR~~~~~~~~~lT~K~p~-~-g~~--k~~~E~e~~v~d~~~~~~ 93 (179)
T 1yem_A 29 FNPEFVRYEEQEDVYFEVPRP-----------KLLRIRGVHNLKKYYLTFKEIL-D-ENN--EEFYEVEFEIGDFEKAVE 93 (179)
T ss_dssp TCCEEEEEEEEEEEEECCCTT-----------EEEEEEEETTTTEEEEEEEEEC-S-SSS--CEEEEEEEEESCHHHHHH
T ss_pred cCCccCcceEEEEEEEcCCCC-----------CEEEEEEEcCCCeEEEEEeccC-C-CCc--cceeEEEEEeCCHHHHHH
Confidence 344667778899999999876 4569995 4889999999998 4 443 9999999999 7889
Q ss_pred HHHhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecC------HHHHHHHHHHcCCCCCc-cchhHHHHHH
Q 003460 323 GLLDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTN------RKTVGAEALRMGINGPW-ITKSYLEMVL 395 (818)
Q Consensus 323 ~L~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~~------~~~i~~~~~~Lgl~~~~-~~~sYlel~l 395 (818)
+|..|||.+...++|.|..|.+++++|+||+++|+|. |+|||... .+.+.+++++|||+.+. +++||+||++
T Consensus 94 iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG~-f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~eLl~ 172 (179)
T 1yem_A 94 VFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIGD-FVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLELIN 172 (179)
T ss_dssp HHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTTTC-
T ss_pred HHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCCCC-EEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHHHHH
Confidence 9999999999999999999999999999999999997 99999874 57899999999999874 9999999998
Q ss_pred hhcC
Q 003460 396 EKKG 399 (818)
Q Consensus 396 ~~~~ 399 (818)
++.+
T Consensus 173 ~~~~ 176 (179)
T 1yem_A 173 ELSG 176 (179)
T ss_dssp ----
T ss_pred hhhc
Confidence 8654
No 5
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=99.86 E-value=1e-21 Score=197.34 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=123.3
Q ss_pred cccccccccccceeeccCCCCCcchhhhccCCeeeEe----eeCCEEEEEEcceeecCCCcccCceeEEEEecc-----H
Q 003460 250 ISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMR----QSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRM-----T 320 (818)
Q Consensus 250 ~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR----~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~-----~ 320 (818)
++.+.....|.|+|||+|+++++.++.++ ||| ..+++..+|||||..++.. +.|.|+|+.|. +
T Consensus 21 ~~~~~~~~~q~d~YfDtp~~~L~~~~~~L-----RiR~~~~~~~~~~~lT~K~p~~~~~~---~~r~E~e~~v~~~~~~~ 92 (183)
T 2een_A 21 TFEFMRKEIHEDIYYQHPCRDFSKTDEAL-----RIRIKRFNGHNEVFLTYKGPKIDEKS---KTRLEIEVEIQEDVDKY 92 (183)
T ss_dssp TSEEEEEEEEEEEEEECSSSCHHHHTCEE-----EEEEEEETTEEEEEEEEEEEECCTTS---CCEEEEEEEECSCHHHH
T ss_pred cCccCccEEEEEeEEcCCCccHHhCCeEE-----EEeeeecCCCCEEEEEECCCcCCCCc---eeEEEEEEeecCCHHHH
Confidence 34555667899999999999999999888 999 4467899999999875443 89999999996 8
Q ss_pred HHHHHhcCCceeEEEEEEEEEEEeC-CEEEEEeccCCCCCCeEEEEec--C-------HHHHHHHHHHcCCCCCccchhH
Q 003460 321 LGGLLDLGYSVVASYKRASTYVVYG-NLSVSFETIDTLDETFMVLRGT--N-------RKTVGAEALRMGINGPWITKSY 390 (818)
Q Consensus 321 ~~~L~~LGf~~~~~~~K~R~~~~~~-~~~i~lD~v~~lg~~fvEiE~~--~-------~~~i~~~~~~Lgl~~~~~~~sY 390 (818)
.++|..|||.++++++|.|+.|.++ +++|+||+++++|. |+|||.. + .+.+.+++++||| .+.+++||
T Consensus 93 ~~~L~~lgl~~~~~~~k~R~~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY 170 (183)
T 2een_A 93 FELLDRLGFKEVLKVVKTREKYYVEKGVTITLDEVEGLGK-FIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSY 170 (183)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCH
T ss_pred HHHHHHCCCeEEEEEEEEEEEEEeCCCEEEEEEeecCCee-EEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccH
Confidence 9999999999999999999999999 99999999999999 9999986 1 2678999999999 66799999
Q ss_pred HHHHHhhcCCC
Q 003460 391 LEMVLEKKGVP 401 (818)
Q Consensus 391 lel~l~~~~~~ 401 (818)
++|++++.+.+
T Consensus 171 ~ell~~~~~~~ 181 (183)
T 2een_A 171 LELLLEKRTEL 181 (183)
T ss_dssp HHHHHHTC---
T ss_pred HHHHHhhhhhc
Confidence 99999876543
No 6
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.84 E-value=3.5e-21 Score=209.13 Aligned_cols=176 Identities=19% Similarity=0.193 Sum_probs=142.6
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh-h---c-ccCCCcccccHHHHHHHHHHHhc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV-K---D-FKYDDFSSLDLSLLSKNISDIRN 582 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~-~---~-~~~d~p~t~D~~ll~~~L~~L~~ 582 (818)
+++.+|||+|++|||||||++.|+..++ +.++++|+++.+... . - ..++.+.++|...+...+..+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~ 157 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKS 157 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhC
Confidence 5678999999999999999999999876 668899999875321 1 1 13566889999999999999999
Q ss_pred CCc-eecccccccccccCCCcceeeecCCcEEEEEecccchH-----------hhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460 583 GRR-TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----------EIRKSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 583 g~~-v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~-----------~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
|+. +.+|.||+..+++.+. .+....+.++||+||++++++ .+.+.+|.+|||++|.+.++.|++.|+
T Consensus 158 ~~~~i~~P~~~~~~~~~~~~-~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~ 236 (308)
T 1sq5_A 158 GVPNVTAPVYSHLIYDVIPD-GDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRF 236 (308)
T ss_dssp TCSCEEECCEETTTTEECTT-CCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCCceecccccccccCcccc-cceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 988 9999999999988753 233334568999999999975 688999999999999999999999997
Q ss_pred ccc---------------cCcccch------hhHHHhhcchhhhhccccCCcccEEEeCCCC
Q 003460 651 KSR---------------MGCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (818)
Q Consensus 651 ~~~---------------rg~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (818)
... +|.+.++ .||...++|++.+||+|++.+||+||+|+-+
T Consensus 237 ~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~ 298 (308)
T 1sq5_A 237 LKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSAN 298 (308)
T ss_dssp HHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGG
T ss_pred HHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCC
Confidence 532 2444332 3455667899999999999999999998743
No 7
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.84 E-value=2.2e-21 Score=208.95 Aligned_cols=174 Identities=15% Similarity=0.284 Sum_probs=135.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc-hhhh---------h--cccCCC--cccccHHHHHH
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK-SEQV---------K--DFKYDD--FSSLDLSLLSK 575 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~-~~~~---------~--~~~~d~--p~t~D~~ll~~ 575 (818)
.++++|||+||+||||||+|+.|++.+| +.++++|+||+ +... . ..+++. |+++|.+.+.+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~ 82 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELER 82 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHH
Confidence 3577899999999999999999999887 78999999997 2211 1 124444 99999999999
Q ss_pred HHHHHhcCCceecccccc-----cccccCCC--cceeee-cCCcEEEEEecccc----hHhhhhcCCEEEEEEcChhHHH
Q 003460 576 NISDIRNGRRTKVPIFDL-----ETGARSGF--KELEVS-EDCGVIIFEGVYAL----HPEIRKSLDLWIAVVGGVHSHL 643 (818)
Q Consensus 576 ~L~~L~~g~~v~~P~yD~-----~~~~r~~~--~~~~~~-~~~~vvIvEG~~~~----~~~l~~~~D~~I~v~~~~d~rl 643 (818)
.+..+..++.+..|.|++ ..+.+... ..|... .+.+++|+||++++ +..+.+.+|++|||+++.++++
T Consensus 83 ~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl 162 (290)
T 1a7j_A 83 VFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEW 162 (290)
T ss_dssp HHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHH
T ss_pred HHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHH
Confidence 999999999999999965 33433321 112222 35789999999998 3568889999999999999999
Q ss_pred HHHHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccE------EEeCC
Q 003460 644 ISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHL------KIRND 689 (818)
Q Consensus 644 ~Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADi------vI~n~ 689 (818)
.|++.||..+||.+.++ ..+... .|.+.+||+|.+..||+ +|+|+
T Consensus 163 ~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns 215 (290)
T 1a7j_A 163 IQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTS 215 (290)
T ss_dssp HHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCS
T ss_pred HHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCC
Confidence 99999999999988775 334444 89999999999999999 66665
No 8
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.84 E-value=8.4e-21 Score=199.90 Aligned_cols=172 Identities=27% Similarity=0.496 Sum_probs=142.0
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCc----------ccccccccch---h-----hhhcccCCCcccccHHHHHH
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFKS---E-----QVKDFKYDDFSSLDLSLLSK 575 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~----------vis~Ddfy~~---~-----~~~~~~~d~p~t~D~~ll~~ 575 (818)
.++|++|||+|++||||||+|+.|++.+|.. ++++|+||+. . ..+...|++|+++|.+++.+
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~ 98 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILK 98 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHH
Confidence 4578999999999999999999999999977 7999999974 1 12346788999999999999
Q ss_pred HHHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccc-hHhhhhcCCEEEEEEcChhHHHHHHHhcCcccc
Q 003460 576 NISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM 654 (818)
Q Consensus 576 ~L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r 654 (818)
.|..+..|..+..|.||+.++.+.. .+....+.++||+||++++ .+.+.+.+|.+||++++.++++.|+..|+...+
T Consensus 99 ~L~~l~~~~~v~~~~~d~~~~~~~~--~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~r 176 (252)
T 1uj2_A 99 TLKEITEGKTVQIPVYDFVSHSRKE--ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISER 176 (252)
T ss_dssp HHHHHHTTCCEEEEEEETTTTEEEE--EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCeeecCccccccccCCC--ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999987762 2333345689999999997 578888899999999999999999999986556
Q ss_pred Ccccch--hhHHHhhcchhhhhccccCCcccEEEe
Q 003460 655 GCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIR 687 (818)
Q Consensus 655 g~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~ 687 (818)
|.+.+. .++.....+.+..+++|.+..||++|+
T Consensus 177 g~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 177 GRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp CCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred CCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 655443 244445667788899999999999994
No 9
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=99.84 E-value=8.8e-21 Score=189.87 Aligned_cols=129 Identities=12% Similarity=0.151 Sum_probs=114.6
Q ss_pred ccccccccccceeeccCCCCCcchhhhccCCeeeEeee--CCEEEEEEcceeecCCCcccCceeEEEEec----cHHHHH
Q 003460 251 SAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQS--GIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGL 324 (818)
Q Consensus 251 ~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~--~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L 324 (818)
..+.....|.|+||++|+++++.++.++ |||.. +...++||||| +.+.|.++.| .+..+|
T Consensus 33 ~~~~~~~~q~d~Yfd~p~~~l~~~~~~l-----RiR~~~~~~~~~lt~kg~---------~~~~e~e~~v~~~~~~~~~l 98 (179)
T 3n10_A 33 TAFTLNNHEKDIYLDANGQDLAKQQISM-----VLREMNPSGIRLWIVKGP---------GAERCEASNIEDVSKVQSML 98 (179)
T ss_dssp EEEEEEEEEEEEEEECTTCTTGGGTCEE-----EEEEEETTCCEEEEEECS---------SSSBEEEEECSCHHHHHHHH
T ss_pred ccccceEEEEEEEEeCCChhHHhCCceE-----EEEecCCCceEEEEEcCC---------ccccceeeccCCHHHHHHHH
Confidence 3556677899999999999999988888 99976 45788999976 3567888888 899999
Q ss_pred HhcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--CH-------HHHHHHHHHcCCCCCc-cchhHHHHH
Q 003460 325 LDLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR-------KTVGAEALRMGINGPW-ITKSYLEMV 394 (818)
Q Consensus 325 ~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~~-------~~i~~~~~~Lgl~~~~-~~~sYlel~ 394 (818)
..|||.++++++|.|++|.+++++|+||+|+++|. |+|||.. +. +.+.+++++|||+.+. +++||+|||
T Consensus 99 ~~lg~~~~~~~~k~R~~~~~~~~~v~lD~v~~lG~-f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY~eLL 177 (179)
T 3n10_A 99 ATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLGD-FAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp HHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred HhCCCeEEEEEEEEEEEEEECCEEEEEEeccCCCc-EEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecHHHHh
Confidence 99999999999999999999999999999999999 9999987 22 5689999999999866 899999997
No 10
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.82 E-value=2.1e-20 Score=201.17 Aligned_cols=179 Identities=18% Similarity=0.277 Sum_probs=136.5
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC-------Cccc-ccccccchhhhh-cc-----------cCCCcccccHHH
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG-------CEVV-SLESYFKSEQVK-DF-----------KYDDFSSLDLSL 572 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg-------~~vi-s~Ddfy~~~~~~-~~-----------~~d~p~t~D~~l 572 (818)
..+++.+|||+|+|||||||+++.|+..++ +.++ ++|+||.+.... .. .++.|+++|.++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~ 106 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKL 106 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHH
Confidence 456789999999999999999999998874 4456 999999874321 11 134699999999
Q ss_pred HHHHHHHHhcC------Cceecccccccc----cccCCCcceeeecCCcEEEEEecccch-Hh-----------------
Q 003460 573 LSKNISDIRNG------RRTKVPIFDLET----GARSGFKELEVSEDCGVIIFEGVYALH-PE----------------- 624 (818)
Q Consensus 573 l~~~L~~L~~g------~~v~~P~yD~~~----~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~----------------- 624 (818)
+.+.|..|+.| +.+.+|.||+.. ++|.+...+... +.+|+|+||++++. +.
T Consensus 107 l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~ 185 (290)
T 1odf_A 107 LQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDV 185 (290)
T ss_dssp HHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHH
T ss_pred HHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHH
Confidence 99999999998 778999999999 888765445555 78999999999853 32
Q ss_pred ----------hhhcCCEE---EEEEcChhHHHHH-HHhc--C-cccc--Ccccch-hhHHHhhcchhhhhccccC-----
Q 003460 625 ----------IRKSLDLW---IAVVGGVHSHLIS-RVQR--D-KSRM--GCFMSQ-NDIMMTVFPMFQQHIEPHL----- 679 (818)
Q Consensus 625 ----------l~~~~D~~---I~v~~~~d~rl~R-ri~R--d-~~~r--g~~~~~-~~~~~~v~p~~~~~I~p~~----- 679 (818)
+++++|++ |||+++.+.++.| |++| | ..++ |.+.++ .+|...++|+|+.|++|..
T Consensus 186 n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~p~y~~~~~~~~~~~~~ 265 (290)
T 1odf_A 186 NAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYMPSYKLYLNDFVRSESL 265 (290)
T ss_dssp HHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchHHHHhHHHHHhccC
Confidence 34445555 9999988777776 8888 5 3345 676665 5788889998888876532
Q ss_pred -CcccEEEeCCCCC
Q 003460 680 -VHAHLKIRNDFDP 692 (818)
Q Consensus 680 -~~ADivI~n~~~~ 692 (818)
..||+++..+-+.
T Consensus 266 ~~~adlvl~~~~~~ 279 (290)
T 1odf_A 266 GSIATLTLGIDSNR 279 (290)
T ss_dssp SSSEEEEEEECTTS
T ss_pred CCCCCEEEEECCCC
Confidence 3799998755443
No 11
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=99.81 E-value=1.1e-19 Score=179.58 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=112.3
Q ss_pred cccccccccceeeccCCCCCcchhhhccCCeeeEee--eCCEEEEEEcceeecCCCcccCceeEEEEec----cHHHHHH
Q 003460 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQ--SGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLL 325 (818)
Q Consensus 252 ~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~--~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~ 325 (818)
.+.....|.|.||++|++ .+||||. .++++.||||||. + +.. +.+.|+|+.| .+.++|.
T Consensus 24 ~~~~~~~q~d~Yfdt~~~-----------~~LRiR~~~~~~~~~lT~K~~~-~-g~~--~~~~E~e~~i~~~~~~~~~L~ 88 (165)
T 2dc4_A 24 KFFGIEEQEDVYFELPSP-----------KLLRVRKINNTGKSYITYKEIL-D-KRN--EEFYELEFEVQDPEGAIELFK 88 (165)
T ss_dssp EEEEEEEEEEEEECCSTT-----------EEEEEEEETTTTEEEEEEEEEC-S-SSS--CEEEEEEEEBSCHHHHHHHHH
T ss_pred CcCcceeEEEEEEcCCCC-----------CEEEEEEEcCCCEEEEEEeCcC-C-CCc--eeeeEEEEEcCCHHHHHHHHH
Confidence 344456799999999876 3559995 4899999999988 4 443 8999999999 7888999
Q ss_pred hcCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEecC------HHHHHHHHHHcCCCCCc-cchhHHHHHHh
Q 003460 326 DLGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGTN------RKTVGAEALRMGINGPW-ITKSYLEMVLE 396 (818)
Q Consensus 326 ~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~~------~~~i~~~~~~Lgl~~~~-~~~sYlel~l~ 396 (818)
.|||.+...++|.|..|.+++++++||.++|+|. |+|||... .+.+.+++++|||+.+. +++||++|+++
T Consensus 89 ~lg~~~~~~~~k~R~~~~~~~~~i~lD~~~~~g~-~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~ell~~ 165 (165)
T 2dc4_A 89 RLGFKVQGVVKKRRWIYKLNNVTFELNRVEKAGD-FLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIELING 165 (165)
T ss_dssp HTTCCEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHHCC-
T ss_pred HcCCcEEEEEEEEEEEEEECCEEEEEEecCCCcc-EEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHHhhC
Confidence 9999999999999999999999999999999997 99999874 47899999999999874 99999999864
No 12
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.81 E-value=2.2e-19 Score=195.19 Aligned_cols=238 Identities=18% Similarity=0.247 Sum_probs=169.4
Q ss_pred cccccccceecccCCCCCCc--ccccCCCcccceecccCCCCc-chhhhhHHHHHHHHHHH-------------HcCCCC
Q 003460 454 MEPVLATWHFISSDPSHAGS--SVIGSSSFRDTVKLVPMPDSY-DFDRGLLLSVQAIQALL-------------ENKGLP 517 (818)
Q Consensus 454 ~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~i~~l~-------------~~~~~p 517 (818)
......+|+.++...+..++ +.....++.+.+.+..+-..| +..+.+.+.+.+.+.+. ...+.+
T Consensus 11 ~~~~r~~~~~l~~~~~~~~~~~~~~~l~~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g 90 (312)
T 3aez_A 11 VEFDRRQWRALRMSTPLALTEEELVGLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVP 90 (312)
T ss_dssp EEEEHHHHHGGGTTCCCCCCHHHHHTTCCTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCC
T ss_pred eeECHHHHHHHHhcCCCCCCHHHHHhccCCCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCC
Confidence 45778999955555555554 444444566655554333333 22222222222222222 014678
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC-------Ccccccccccchhhh----hcc-cCCCcccccHHHHHHHHHHHhcCCc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVG-------CEVVSLESYFKSEQV----KDF-KYDDFSSLDLSLLSKNISDIRNGRR 585 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg-------~~vis~Ddfy~~~~~----~~~-~~d~p~t~D~~ll~~~L~~L~~g~~ 585 (818)
.+|||.||+|||||||++.|+..+. +.++++|+||.+... ... .++.|.++|.+.+.+.|..+..|..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~ 170 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSD 170 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCS
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999998763 458899999876421 111 2467889999999999999987765
Q ss_pred -eecccccccccccCCCcceeeecCCcEEEEEecccch----HhhhhcCCEEEEEEcChhHHHHHHHhcCcccc------
Q 003460 586 -TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH----PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRM------ 654 (818)
Q Consensus 586 -v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~----~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~r------ 654 (818)
...|.|++..+.|... ......+.+|+|+||++++. +.+.+.+|++|||+++.+.++.|++.|+...|
T Consensus 171 ~~~~~~lS~G~~qRv~~-a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~ 249 (312)
T 3aez_A 171 YACAPVYSHLHYDIIPG-AEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFAD 249 (312)
T ss_dssp CEEEEEEETTTTEEEEE-EEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGS
T ss_pred cCCcccCChhhhhhhhh-HHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccC
Confidence 8889999999888753 23345567999999999986 57899999999999999999999998854322
Q ss_pred ---------Ccccch------hhHHHhhcchhhhhccccCCcccEEEeCCCCC
Q 003460 655 ---------GCFMSQ------NDIMMTVFPMFQQHIEPHLVHAHLKIRNDFDP 692 (818)
Q Consensus 655 ---------g~~~~~------~~~~~~v~p~~~~~I~p~~~~ADivI~n~~~~ 692 (818)
|.+.++ .+|...+.|++.+||.|++.+||+||+++-+.
T Consensus 250 ~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~ 302 (312)
T 3aez_A 250 PESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADH 302 (312)
T ss_dssp TTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTS
T ss_pred cchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCCC
Confidence 222222 24555678999999999999999999987554
No 13
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.78 E-value=1.8e-19 Score=196.76 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=113.6
Q ss_pred ccccccccchhhh---------hcccCCCcccccHHHHHHHHHHHhcC-----------------------------Cce
Q 003460 545 VVSLESYFKSEQV---------KDFKYDDFSSLDLSLLSKNISDIRNG-----------------------------RRT 586 (818)
Q Consensus 545 vis~Ddfy~~~~~---------~~~~~d~p~t~D~~ll~~~L~~L~~g-----------------------------~~v 586 (818)
+++||+||++... ...+++.|++||..+|.+.+..|++| +.+
T Consensus 158 vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v 237 (359)
T 2ga8_A 158 IVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDI 237 (359)
T ss_dssp EEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCE
T ss_pred EEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceE
Confidence 6899999988432 24578999999999999999999887 578
Q ss_pred ecccccccccccCCCcceeeecCCcEEEEEecccchH-----hhhhcCC-----EEEEEEcChhHHHHHHHhcCccccCc
Q 003460 587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHP-----EIRKSLD-----LWIAVVGGVHSHLISRVQRDKSRMGC 656 (818)
Q Consensus 587 ~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~-----~l~~~~D-----~~I~v~~~~d~rl~Rri~Rd~~~rg~ 656 (818)
.+|.||+.++++.+. ...+..+.++||+||++++++ .+++++| ++|||+++.+++++|++.|+.. +|.
T Consensus 238 ~~P~yD~~~~d~~~~-~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~-~Gl 315 (359)
T 2ga8_A 238 FVPGFNHALKDPTPD-QYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQ-SGL 315 (359)
T ss_dssp EEEEEETTTTEEEEE-EEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHH-TTS
T ss_pred eeccccCccCCCCCC-ceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhc-cCC
Confidence 999999999998753 233334469999999888863 4678899 9999999999999999999874 466
Q ss_pred --ccch--hhHHHhhcchhhhhccccCCcccEEEe
Q 003460 657 --FMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIR 687 (818)
Q Consensus 657 --~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~ 687 (818)
+.++ .++.....|+. +||+|++..||+|+.
T Consensus 316 ~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 316 VTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp CSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred CCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 5444 35556778877 899999999999874
No 14
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.78 E-value=1.5e-18 Score=188.35 Aligned_cols=194 Identities=15% Similarity=0.195 Sum_probs=146.7
Q ss_pred cCCcccccch---hhHHHHHHHHHHH----------------HhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-------
Q 003460 34 SLPVHASFDH---GYYLLVKSIQELR----------------EKKGGIVTVGIGGPSGSGKTSLAEKLASVIG------- 87 (818)
Q Consensus 34 ~~~~~~s~~~---~~~~l~~~i~~~~----------------~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg------- 87 (818)
..+..+++++ .|..+++.+.... ....++.+|||+|++|||||||++.|+..++
T Consensus 33 ~~~~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 33 GINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp HHCTTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred CCccccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 3445566665 6666666665433 1225678999999999999999999999876
Q ss_pred CeEEeccceecc--------c-ccCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCccEEEEEe
Q 003460 88 CTLISMENYRVG--------V-DEGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASSGVVIVDG 157 (818)
Q Consensus 88 ~~vI~~D~~~~~--------~-~~~~~~~~~d~~~l~~~L~~l~~~~~-i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG 157 (818)
+.+|++|+++.. + ...+.+.+++...+...+..+..+.. +.+|.|++..+.+............+||+||
T Consensus 113 i~vi~~d~~~~~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG 192 (308)
T 1sq5_A 113 VELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEG 192 (308)
T ss_dssp EEEEEGGGGBCCHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEEC
T ss_pred EEEEecCCccCcHHHHHhCCEeecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEEECc
Confidence 678999998642 1 12344577888888888888888887 8999999999887654333334467999999
Q ss_pred cccchh-----------hhhcCCCEEEEEEcCHHHHHHHHHHhccC-----C-----------CcCHHHHHHh-------
Q 003460 158 TYALDA-----------RLRSLLDIRVAVVGGVHFSLISKVQYDIG-----D-----------SCSLDSLIDS------- 203 (818)
Q Consensus 158 ~~l~~~-----------~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~-----~-----------~~s~e~~~~~------- 203 (818)
+++++. .+.+++|.+|||++|.+.+++|++.|+.. . ..+.+++.+.
T Consensus 193 ~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~ 272 (308)
T 1sq5_A 193 LNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKE 272 (308)
T ss_dssp TTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHH
T ss_pred hhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHh
Confidence 999985 68889999999999999999999998731 0 2344544332
Q ss_pred -hchhhhhccCCccccCcEEEECCC
Q 003460 204 -IFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 204 -~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
..|++.+||+|.+++||+||+|+.
T Consensus 273 ~~~~~~~~~i~~~~~~AD~vI~n~~ 297 (308)
T 1sq5_A 273 INWLNLKQNILPTRERASLILTKSA 297 (308)
T ss_dssp THHHHHHHTTGGGGGGCSEEEEECG
T ss_pred ccHHHHHHHcccccccCcEEEEeCC
Confidence 246788999999999999999984
No 15
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=99.77 E-value=4e-19 Score=179.37 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=112.3
Q ss_pred ccccccccceeeccCCCCCcchhhhccCCeeeEeeeC--CEEEEEEcceeecCCCcccCceeEEEEec----cHHHHHHh
Q 003460 253 FQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSG--IRYYLSIGDQRIVDKNFIIRPKAEFEVGR----MTLGGLLD 326 (818)
Q Consensus 253 ~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~--~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v----~~~~~L~~ 326 (818)
+.....|.|+|||+|+++++.++.++ |||..+ +...+|+|||+.++ +.|+.| .+.++|..
T Consensus 37 ~~~~~~q~d~YfDtp~~~L~~~~~aL-----RiR~~~~~~~~~~t~Kgp~~~~---------~~e~~v~d~~~~~~~L~~ 102 (189)
T 2aca_A 37 MFENNQESDWFYDTPQRTLTQQGKSL-----VLREIQPAGIKLWIVKGPEADR---------CEATNITKLDSAQSMLEN 102 (189)
T ss_dssp EEEEEEEEEEEEECTTCHHHHTTCEE-----EEEEEETTTEEEEEEECSSTTB---------EEEEEBSCHHHHHHHHHH
T ss_pred cCcceEEEEEEEeCCCcchhhCCeEE-----EEEEecCCCcEEEEEcCCCcCc---------eEEEecCCHHHHHHHHHH
Confidence 44566799999999999999999998 999763 36899999987532 235666 88999999
Q ss_pred cCCceeEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--C-------HHHHHHHHHHcCCCCCc-cchhHHHHHHh
Q 003460 327 LGYSVVASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--N-------RKTVGAEALRMGINGPW-ITKSYLEMVLE 396 (818)
Q Consensus 327 LGf~~~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~-------~~~i~~~~~~Lgl~~~~-~~~sYlel~l~ 396 (818)
|||.++++++|.|++|.+++++|+||+++++|. |+|||.. + .+.+.+++++|||..+. +++||++|+++
T Consensus 103 lgl~~~~~~~k~R~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~~ll~~ 181 (189)
T 2aca_A 103 MGYEVIQCSKKIRSIFFVGEFHITLDFLDGFGH-FAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSYKEILSA 181 (189)
T ss_dssp TTCEEEEEEEEEEEEEEETTEEEEEEEETTTEE-EEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSCTTTSSCC
T ss_pred cCCcEEEEEEEEEEEEEECCEEEEEEcccCCee-EEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhhHHHHHHh
Confidence 999999999999999999999999999999998 9999976 2 37889999999999865 89999999876
Q ss_pred hc
Q 003460 397 KK 398 (818)
Q Consensus 397 ~~ 398 (818)
..
T Consensus 182 ~~ 183 (189)
T 2aca_A 182 LE 183 (189)
T ss_dssp --
T ss_pred hh
Confidence 44
No 16
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.76 E-value=8.9e-19 Score=188.52 Aligned_cols=167 Identities=12% Similarity=0.207 Sum_probs=125.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecc-cc---------------cCCC--CCcccHHHHHHH
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG-VD---------------EGND--LDSIDFDALVQN 117 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~-~~---------------~~~~--~~~~d~~~l~~~ 117 (818)
++++|||+|++||||||+|+.|++.+| +.+|++|+||+. .. ..+. ++++|.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 467899999999999999999999887 799999999862 21 1223 678888888888
Q ss_pred HHhhhcCCccccccchh-----hhhccccccc---ccc-CCccEEEEEecccc----hhhhhcCCCEEEEEEcCHHHHHH
Q 003460 118 LQDLTEGKDTLIPMFDY-----QQKNRIGSKV---IKG-ASSGVVIVDGTYAL----DARLRSLLDIRVAVVGGVHFSLI 184 (818)
Q Consensus 118 L~~l~~~~~i~~p~~d~-----~~~~~~~~~~---~~~-~~~~vVIvEG~~l~----~~~l~~~~D~~I~Vda~~e~~l~ 184 (818)
+..+..++.+..|.|++ ..+.+..... ... ....++|+||.+++ +..+.+.+|++|||+++.+++++
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~ 163 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI 163 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHH
Confidence 88888888888888854 2222221111 111 34679999999997 45778899999999999999999
Q ss_pred HHHHhccCCC----cCHHHHHHhhchhhhhccCCccccCcE------EEECCC
Q 003460 185 SKVQYDIGDS----CSLDSLIDSIFPLFRKHIEPDLHHAQI------RINNRF 227 (818)
Q Consensus 185 Rri~Rd~~~~----~s~e~~~~~~~p~~~~~Iep~~~~ADi------II~N~~ 227 (818)
|++.||...+ ....+.+..++|.+.+|++|.+++||+ +|+|+.
T Consensus 164 Rrl~Rd~~~RG~s~e~v~~~i~~r~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 164 QKIHRDRATRGYTTEAVTDVILRRMHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp HHHHHTSSSCCSCCCCHHHHHHHHHHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred HHhhhhhhhcCCChHHHHHHHHHhCccHHHhhhhhhccCCEeeccCceecCCC
Confidence 9999996554 233333334489999999999999999 788873
No 17
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.76 E-value=5.1e-18 Score=172.98 Aligned_cols=175 Identities=26% Similarity=0.436 Sum_probs=145.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC--Ccccccccccchh------hhhcccCCCcccccHHHHHHHHHHHhcCCce
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFKSE------QVKDFKYDDFSSLDLSLLSKNISDIRNGRRT 586 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg--~~vis~Ddfy~~~------~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v 586 (818)
.++.+|||+||+||||||+++.|+..++ +.++++|.+|... +...+.++.|+++|.+.+.+.+..+..++.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPV 83 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCc
Confidence 4678999999999999999999999988 8899999998741 2233456778889999999999999988889
Q ss_pred ecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch--hhH
Q 003460 587 KVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDI 663 (818)
Q Consensus 587 ~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~ 663 (818)
..|.++++.+.+.. ........+++++||.+++. +.+...+|.+||+|++.+.++.|++.|+...+|.+... +++
T Consensus 84 ~~~~~~~s~g~~~~--~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 84 EMPVYDFRAYTRSP--RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCEETTTTEECS--SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CCCcccCcccCCCC--CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999887653 22223456899999999986 66888999999999999999999999987777776553 456
Q ss_pred HHhhcchhhhhccccCCcccEEEeCCCC
Q 003460 664 MMTVFPMFQQHIEPHLVHAHLKIRNDFD 691 (818)
Q Consensus 664 ~~~v~p~~~~~I~p~~~~ADivI~n~~~ 691 (818)
...+.|.|.+|++|.+..||+||+|+-+
T Consensus 162 ~~~~~~~~~~~~~~~~~~aD~ii~~~~~ 189 (211)
T 3asz_A 162 LEQVKPMHLHFVEPTKRYADVIVPRGGQ 189 (211)
T ss_dssp HHTHHHHHHHTTGGGGGGCSEEEESTTS
T ss_pred HHhhhhhHHHhcccchhcCeEEEeCCCc
Confidence 6678899999999999999999998743
No 18
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.75 E-value=4e-18 Score=174.07 Aligned_cols=171 Identities=19% Similarity=0.213 Sum_probs=135.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccchhhhh----cc-cCCCcccccHHHHHHHHHHHhcC
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVK----DF-KYDDFSSLDLSLLSKNISDIRNG 583 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~~----~~-~~d~p~t~D~~ll~~~L~~L~~g 583 (818)
.++..+|||.||+|||||||++.|+..+. ..++++|+|+...... .+ ..+.|.++|...+.+.+..+..|
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 98 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ 98 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence 45678999999999999999999999875 5789999998763221 11 24578899999999999999999
Q ss_pred CceecccccccccccCCCcceeeecCC-cEEEEEecccch-----HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcc
Q 003460 584 RRTKVPIFDLETGARSGFKELEVSEDC-GVIIFEGVYALH-----PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCF 657 (818)
Q Consensus 584 ~~v~~P~yD~~~~~r~~~~~~~~~~~~-~vvIvEG~~~~~-----~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~ 657 (818)
+.+..|.||+..+.+.+ ........ +++|+||++++. ..+.+.+|.+||++++.+.++.|++.|+ .++|.+
T Consensus 99 ~~i~~p~~d~~~~~~~g--~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~t 175 (208)
T 3c8u_A 99 ERVIYPLFDRARDIAIA--GAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGLN 175 (208)
T ss_dssp SCEEEEEEETTTTEEEE--EEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTCC
T ss_pred CceecccCCccccCCCC--CceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCCC
Confidence 99999999999887654 22233343 899999999854 2567889999999999999999999996 345766
Q ss_pred cch--hhHHHhhcchhhhhccccCCcccEEEeC
Q 003460 658 MSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRN 688 (818)
Q Consensus 658 ~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n 688 (818)
.+. ..+.....|++ +|++|.+..||+||+.
T Consensus 176 ~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 176 HDAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred HHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 554 23433467766 7999999999999974
No 19
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.74 E-value=6.4e-18 Score=177.85 Aligned_cols=164 Identities=23% Similarity=0.454 Sum_probs=130.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCe----------EEeccceecccc------------cCCCCCcccHHHHHHH
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT----------LISMENYRVGVD------------EGNDLDSIDFDALVQN 117 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~----------vI~~D~~~~~~~------------~~~~~~~~d~~~l~~~ 117 (818)
.++++|||+|++||||||+|+.|++.+|+. ++++|+||+.+. ..+.++++|.+.+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~ 99 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKT 99 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHH
Confidence 467899999999999999999999999976 899999987322 2235788999999999
Q ss_pred HHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccc-hhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCC-c
Q 003460 118 LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDS-C 195 (818)
Q Consensus 118 L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~-~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~ 195 (818)
|..+..+..+..|.|++..+.++.. ........+||+||++++ .+.+.+.+|.+|||+++.+++++|+..|+...+ .
T Consensus 100 L~~l~~~~~v~~~~~d~~~~~~~~~-~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~ 178 (252)
T 1uj2_A 100 LKEITEGKTVQIPVYDFVSHSRKEE-TVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR 178 (252)
T ss_dssp HHHHHTTCCEEEEEEETTTTEEEEE-EEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCeeecCccccccccCCCc-eeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCC
Confidence 9999888888889999988876632 222334679999999987 577888899999999999999999999873222 3
Q ss_pred CHHHHHHh----hchhhhhccCCccccCcEEEE
Q 003460 196 SLDSLIDS----IFPLFRKHIEPDLHHAQIRIN 224 (818)
Q Consensus 196 s~e~~~~~----~~p~~~~~Iep~~~~ADiII~ 224 (818)
+.+.+.++ ..+.+.++++|.+..||++|+
T Consensus 179 ~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 179 DLEQILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred CHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 55554443 345678888899999999994
No 20
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.72 E-value=6.1e-17 Score=175.87 Aligned_cols=199 Identities=16% Similarity=0.157 Sum_probs=151.6
Q ss_pred ccccCCcccccch---hhHHHHHHHHHHHH--------------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 31 ILQSLPVHASFDH---GYYLLVKSIQELRE--------------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 31 ~~~~~~~~~s~~~---~~~~l~~~i~~~~~--------------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
.+.+++..+++++ .|.++.+.+..... ..+...+|||.|++|||||||++.|+..+.
T Consensus 36 ~l~~~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 36 GLRGLGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TTCCTTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred hccCCCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3556677788877 78777776654310 145678999999999999999999998762
Q ss_pred -------CeEEeccceeccc--------c-cCCCCCcccHHHHHHHHHhhhcCCc-cccccchhhhhccccccccccCCc
Q 003460 88 -------CTLISMENYRVGV--------D-EGNDLDSIDFDALVQNLQDLTEGKD-TLIPMFDYQQKNRIGSKVIKGASS 150 (818)
Q Consensus 88 -------~~vI~~D~~~~~~--------~-~~~~~~~~d~~~l~~~L~~l~~~~~-i~~p~~d~~~~~~~~~~~~~~~~~ 150 (818)
+.++++|+++... . ..+.++++|.+.+.+.|..+..+.. ...|.|++..+.++..........
T Consensus 116 ~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p 195 (312)
T 3aez_A 116 RWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHP 195 (312)
T ss_dssp TSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSC
T ss_pred ccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCC
Confidence 5689999986421 1 1345678888888888888875544 677899999999886544445567
Q ss_pred cEEEEEecccch----hhhhcCCCEEEEEEcCHHHHHHHHHHhccC-----C-----------CcCHHHHHHh-------
Q 003460 151 GVVIVDGTYALD----ARLRSLLDIRVAVVGGVHFSLISKVQYDIG-----D-----------SCSLDSLIDS------- 203 (818)
Q Consensus 151 ~vVIvEG~~l~~----~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~-----~-----------~~s~e~~~~~------- 203 (818)
+++|+||++++. ..+.+.+|++|||+++.+.+..|++.|... . ..+.+++.+.
T Consensus 196 ~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~ 275 (312)
T 3aez_A 196 DILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAAREIWRT 275 (312)
T ss_dssp SEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHH
T ss_pred CEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHHHHHHHHHHHHHh
Confidence 899999999986 578899999999999999999999888431 1 2344444422
Q ss_pred -hchhhhhccCCccccCcEEEECCCCC
Q 003460 204 -IFPLFRKHIEPDLHHAQIRINNRFVS 229 (818)
Q Consensus 204 -~~p~~~~~Iep~~~~ADiII~N~~~~ 229 (818)
..|++++||+|++.+||+||+|+...
T Consensus 276 ~~~p~~~~~i~p~~~~ADlii~~~~~~ 302 (312)
T 3aez_A 276 INRPNLVENILPTRPRATLVLRKDADH 302 (312)
T ss_dssp THHHHHHHTTGGGGGGCSEEEEECTTS
T ss_pred ccHHHHHHhccCCCCCCeEEEecCCCC
Confidence 36889999999999999999988543
No 21
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.71 E-value=9.1e-18 Score=170.61 Aligned_cols=168 Identities=17% Similarity=0.258 Sum_probs=115.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccchhhh-hcccCC-----CcccccHHHHHHHH-HHHh
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFKSEQV-KDFKYD-----DFSSLDLSLLSKNI-SDIR 581 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~~~~~-~~~~~d-----~p~t~D~~ll~~~L-~~L~ 581 (818)
...+.+|||+|++||||||+++.|+..+ + +.++++|.++++... ...+.. .++++|.+.|.+.+ ..+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 4567999999999999999999999876 4 345678999886321 111111 14789999998765 7788
Q ss_pred cCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccchh
Q 003460 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQN 661 (818)
Q Consensus 582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~ 661 (818)
.|+.+.+|.|++..+.+.. ......+.++||+||++++.+.+.+.+|..|||++|.++++.|++.|+ .. ...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~-----~~-~~~ 170 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSK--RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV-----KQ-NIQ 170 (201)
T ss_dssp TCSEEEEEEEETTTTEEEE--EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC--------------------CHH
T ss_pred cCCccccCceeccCCCCCC--ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC-----HH-HHH
Confidence 8889999999998543321 122234578999999999988888999999999999999999999998 11 112
Q ss_pred hHHHhhcchhhhhcccc--CCcccEEEeCC
Q 003460 662 DIMMTVFPMFQQHIEPH--LVHAHLKIRND 689 (818)
Q Consensus 662 ~~~~~v~p~~~~~I~p~--~~~ADivI~n~ 689 (818)
.+...+.|.+..|+.+. +..||+||+|+
T Consensus 171 ~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 171 KFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 34456788899998766 58999999985
No 22
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.70 E-value=2e-17 Score=168.17 Aligned_cols=164 Identities=18% Similarity=0.321 Sum_probs=111.5
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceecccc---cCCC-------CCcccHHHHHHHH-Hhhh
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRVGVD---EGND-------LDSIDFDALVQNL-QDLT 122 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~~~~---~~~~-------~~~~d~~~l~~~L-~~l~ 122 (818)
...+.+|||+|++||||||+++.|+..+ | +.++++|.++.... ..+. ++++|.+.+.+.+ ..+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~ 98 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLK 98 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHh
Confidence 3567899999999999999999999876 4 34567898876421 1111 2568888887765 5566
Q ss_pred cCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (818)
Q Consensus 123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~ 202 (818)
.+..+.+|.|++..+.... .........+||+||++++++.+.+.+|.+|||++|.++++.|.+.|+ ......+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~---~~~~~~~~~ 174 (201)
T 1rz3_A 99 ASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV---KQNIQKFIN 174 (201)
T ss_dssp TCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC-----------------CHHHHHH
T ss_pred cCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC---HHHHHHHHh
Confidence 7777888888887543322 222334567999999999988888999999999999999999999998 233444557
Q ss_pred hhchhhhhccCCc--cccCcEEEECC
Q 003460 203 SIFPLFRKHIEPD--LHHAQIRINNR 226 (818)
Q Consensus 203 ~~~p~~~~~Iep~--~~~ADiII~N~ 226 (818)
.+.|.++.|+++. +.+||+||+|+
T Consensus 175 ~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 175 RYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred heeHHHHHHhCCCCcHhhCcEEecCC
Confidence 7889888887655 78999999997
No 23
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.70 E-value=1.3e-16 Score=167.01 Aligned_cols=172 Identities=27% Similarity=0.459 Sum_probs=138.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc----------ccccccccch---hh-----hhcccCCCcccccHHHHHHH
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE----------VVSLESYFKS---EQ-----VKDFKYDDFSSLDLSLLSKN 576 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~----------vis~Ddfy~~---~~-----~~~~~~d~p~t~D~~ll~~~ 576 (818)
..+.+|||+||+||||||+++.|+..+|.. ++++|+||.. .+ ...+.+++|.++|.+.+.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRT 102 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHH
Confidence 467899999999999999999999988854 6889988863 11 12345677888999999999
Q ss_pred HHHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccc-hHhhhhcCCEEEEEEcChhHHHHHHHhcCccccC
Q 003460 577 ISDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYAL-HPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (818)
Q Consensus 577 L~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~-~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg 655 (818)
|..+..+.....+.|+...+.|... .....+.+++|+||+.++ .+.+.+.+|.+|+++++.+.++.|++.|+. .+|
T Consensus 103 L~~l~~~~~~~~~~ls~g~~~r~~~--~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~-~~G 179 (245)
T 2jeo_A 103 LKNIVEGKTVEVPTYDFVTHSRLPE--TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDV-RRG 179 (245)
T ss_dssp HHHHHTTCCEEECCEETTTTEECSS--CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHT-C--
T ss_pred HHHHHCCCCeecccccccccCccCc--eEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHH-HcC
Confidence 9988888888888898888777643 233445689999999987 478888899999999999999999999987 667
Q ss_pred cccch--hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 656 CFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 656 ~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
.+.+. .+|....++.+++|++|.+..||+||++.
T Consensus 180 ~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~ 215 (245)
T 2jeo_A 180 RDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRG 215 (245)
T ss_dssp -CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESS
T ss_pred CCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCC
Confidence 76654 45666678899999999999999999654
No 24
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.69 E-value=8.7e-17 Score=164.16 Aligned_cols=166 Identities=19% Similarity=0.310 Sum_probs=130.8
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceeccc---------ccCCCCCcccHHHHHHHHHhhhcC
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV---------DEGNDLDSIDFDALVQNLQDLTEG 124 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~---------~~~~~~~~~d~~~l~~~L~~l~~~ 124 (818)
.++..+|||.|++|||||||++.|+..+. +.+|++|+++... ...+.+.+++...+.+.+..+..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 98 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQ 98 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHhcC
Confidence 45678999999999999999999999885 6789999986421 123456788888888888888888
Q ss_pred CccccccchhhhhccccccccccCCccEEEEEecccch-----hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH
Q 003460 125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-----ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (818)
Q Consensus 125 ~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-----~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~ 199 (818)
+.+..|.+++..+...+.........+++|+||.+++. ..+.+.+|.+|||+++.+.+++|.+.|+.....+.++
T Consensus 99 ~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~~~g~t~~~ 178 (208)
T 3c8u_A 99 ERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDA 178 (208)
T ss_dssp SCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHHHTTCCHHH
T ss_pred CceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHHhcCCCHHH
Confidence 88999999998887655433333334799999999854 2557889999999999999999999997544456665
Q ss_pred HHHh----hchhhhhccCCccccCcEEEEC
Q 003460 200 LIDS----IFPLFRKHIEPDLHHAQIRINN 225 (818)
Q Consensus 200 ~~~~----~~p~~~~~Iep~~~~ADiII~N 225 (818)
+..+ +.|++ ++++|.+.+||+||+.
T Consensus 179 ~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 179 AVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred HHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 5543 56766 7899999999999964
No 25
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.69 E-value=4.6e-17 Score=177.84 Aligned_cols=135 Identities=12% Similarity=0.177 Sum_probs=110.2
Q ss_pred eEEeccceecc-------------cccCCCCCcccHHHHHHHHHhhhcC-----------------------------Cc
Q 003460 89 TLISMENYRVG-------------VDEGNDLDSIDFDALVQNLQDLTEG-----------------------------KD 126 (818)
Q Consensus 89 ~vI~~D~~~~~-------------~~~~~~~~~~d~~~l~~~L~~l~~~-----------------------------~~ 126 (818)
.+|++|+||.. ...++.|++||...+.+.+..|+.+ ..
T Consensus 157 ~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 236 (359)
T 2ga8_A 157 QIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPD 236 (359)
T ss_dssp EEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCC
T ss_pred EEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCce
Confidence 36899999862 2245789999999999998888766 56
Q ss_pred cccccchhhhhccccccccccCCccEEEEEecccchh-----hhhcCCC-----EEEEEEcCHHHHHHHHHHhccCCCc-
Q 003460 127 TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDA-----RLRSLLD-----IRVAVVGGVHFSLISKVQYDIGDSC- 195 (818)
Q Consensus 127 i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~-----~l~~~~D-----~~I~Vda~~e~~l~Rri~Rd~~~~~- 195 (818)
+.+|.||+..++++.......+..++||+||++++.+ .+++++| ++|||+++.+++++|++.|+.....
T Consensus 237 v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~ 316 (359)
T 2ga8_A 237 IFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLV 316 (359)
T ss_dssp EEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSC
T ss_pred EeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCC
Confidence 8899999999999877666666678999999877763 4667898 9999999999999999999865444
Q ss_pred -CHHHHHHhh----chhhhhccCCccccCcEEEE
Q 003460 196 -SLDSLIDSI----FPLFRKHIEPDLHHAQIRIN 224 (818)
Q Consensus 196 -s~e~~~~~~----~p~~~~~Iep~~~~ADiII~ 224 (818)
+.+++.+++ .|+. ++|+|++.+||+|+.
T Consensus 317 ~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 317 TTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp SSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred CCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 777766653 7766 799999999999885
No 26
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.66 E-value=9e-17 Score=164.17 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=118.2
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh-
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD- 120 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~- 120 (818)
+..+.-|||+|++||||||+++.|++ +|+++|++|.+.+.+...+ ..+.+|...|.+.+..
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d 84 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSD 84 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCC
Confidence 45688999999999999999999998 9999999999755332211 2256888887776552
Q ss_pred ---hhcCCccccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcC
Q 003460 121 ---LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS 196 (818)
Q Consensus 121 ---l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s 196 (818)
+...+.+.+|.+.......... ....++++|.+++++ ..+...+|.+|+|++|.+++++|.+.|+......
T Consensus 85 ~~~~~~L~~i~HP~I~~~~~~~~~~-----~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rdg~s~ee 159 (210)
T 4i1u_A 85 EDARRRLEAITHPLIRAETEREARD-----AQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRNGFTREQ 159 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----CCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh-----cCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcCCCCHHH
Confidence 2223456666665554444321 234579999999999 8999999999999999999999999998543344
Q ss_pred HHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460 197 LDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 197 ~e~~~~~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
....++.++|..++ +..||+||+|+
T Consensus 160 a~~ri~~Q~~~eek-----~~~AD~VIdN~ 184 (210)
T 4i1u_A 160 VEAIIARQATREAR-----LAAADDVIVND 184 (210)
T ss_dssp HHHHHHHSCCHHHH-----HHTCSEEEECS
T ss_pred HHHHHHHcCChHHH-----HHhCCEEEECC
Confidence 44555567777665 68999999998
No 27
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.65 E-value=4.2e-16 Score=167.59 Aligned_cols=183 Identities=16% Similarity=0.216 Sum_probs=127.5
Q ss_pred hhhHHHHHHHHHHHH-hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-------CeEE-eccceeccc-------------
Q 003460 43 HGYYLLVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-------CTLI-SMENYRVGV------------- 100 (818)
Q Consensus 43 ~~~~~l~~~i~~~~~-~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-------~~vI-~~D~~~~~~------------- 100 (818)
.....+++.+..+.. ..+++.+|||+|++||||||+++.|+..++ +.++ ++|+||...
T Consensus 11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~ 90 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNN 90 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhcccccc
Confidence 344446666665433 446689999999999999999999998874 4556 999997632
Q ss_pred ---ccCCCCCcccHHHHHHHHHhhhcC------Cccccccchhhh----hccccc-cccccCCccEEEEEecccch-hh-
Q 003460 101 ---DEGNDLDSIDFDALVQNLQDLTEG------KDTLIPMFDYQQ----KNRIGS-KVIKGASSGVVIVDGTYALD-AR- 164 (818)
Q Consensus 101 ---~~~~~~~~~d~~~l~~~L~~l~~~------~~i~~p~~d~~~----~~~~~~-~~~~~~~~~vVIvEG~~l~~-~~- 164 (818)
..++.|+++|.+.+.+.|..+..| ..+.+|.|++.. ++++.. ..... +.+++|+||++++. +.
T Consensus 91 ~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 91 KLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCC
T ss_pred chhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccc
Confidence 113458999999999999999888 567889999887 776542 12223 57899999998743 32
Q ss_pred --------------------------hhcCCCEE---EEEEcCHHHHHHH-HHHh--c----cCCCcCHH---HHHHhhc
Q 003460 165 --------------------------LRSLLDIR---VAVVGGVHFSLIS-KVQY--D----IGDSCSLD---SLIDSIF 205 (818)
Q Consensus 165 --------------------------l~~~~D~~---I~Vda~~e~~l~R-ri~R--d----~~~~~s~e---~~~~~~~ 205 (818)
+++.+|+. |||+++.+.++.| |+.| + .....+.+ ++.++++
T Consensus 170 ~~~~~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~~~~~~~ 249 (290)
T 1odf_A 170 QGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHAFVDRYM 249 (290)
T ss_dssp SCTTTCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHHHHHTTH
T ss_pred hhhhhcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 34445555 9999976666665 7777 3 11123444 4455667
Q ss_pred hhhhhccC-------CccccCcEEEECCC
Q 003460 206 PLFRKHIE-------PDLHHAQIRINNRF 227 (818)
Q Consensus 206 p~~~~~Ie-------p~~~~ADiII~N~~ 227 (818)
|.|+.|++ |.+ +||+|+..+.
T Consensus 250 p~y~~~~~~~~~~~~~~~-~adlvl~~~~ 277 (290)
T 1odf_A 250 PSYKLYLNDFVRSESLGS-IATLTLGIDS 277 (290)
T ss_dssp HHHHHHHHHHHHHTCSSS-SEEEEEEECT
T ss_pred chHHHHhHHHHHhccCCC-CCCEEEEECC
Confidence 87766664 444 8999997663
No 28
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.64 E-value=1.1e-15 Score=155.63 Aligned_cols=167 Identities=25% Similarity=0.435 Sum_probs=129.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC--CeEEeccceecccc----------cCCCCCcccHHHHHHHHHhhhcCCcc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVGVD----------EGNDLDSIDFDALVQNLQDLTEGKDT 127 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~~~~~~~----------~~~~~~~~d~~~l~~~L~~l~~~~~i 127 (818)
+++.+|||+|++|||||||++.|+..++ +.++++|.++.... ..+.+..++.+.+.+.+..+..++.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 83 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPV 83 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCc
Confidence 4567999999999999999999999988 99999999876321 12335667778888888877777777
Q ss_pred ccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCC-CcCHH----HHH
Q 003460 128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGD-SCSLD----SLI 201 (818)
Q Consensus 128 ~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~-~~s~e----~~~ 201 (818)
..|.++...+.+.... ......+++++||.+++. +.+..++|.+||||++.+.++.|++.|+... ..+.. .+.
T Consensus 84 ~~~~~~~s~g~~~~~~-~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 84 EMPVYDFRAYTRSPRR-TPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EECCEETTTTEECSSC-EEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCcccCcccCCCCCe-EEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7788877776654321 112335699999999986 6778899999999999999999999987432 23333 334
Q ss_pred HhhchhhhhccCCccccCcEEEECCC
Q 003460 202 DSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 202 ~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
.+..|.|.++++|.+.+||+||+|+.
T Consensus 163 ~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 163 EQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp HTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred HhhhhhHHHhcccchhcCeEEEeCCC
Confidence 45678999999999999999999984
No 29
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=4.3e-15 Score=155.49 Aligned_cols=166 Identities=20% Similarity=0.399 Sum_probs=128.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCe----------EEeccceecccc------------cCCCCCcccHHHHHHH
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCT----------LISMENYRVGVD------------EGNDLDSIDFDALVQN 117 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~----------vI~~D~~~~~~~------------~~~~~~~~d~~~l~~~ 117 (818)
+.+.+|||+|++|||||||++.|+..+|.. ++++|.||+.+. ..+.++.++.+.+.+.
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRT 102 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHH
Confidence 456899999999999999999999988854 789998876321 1123456777778888
Q ss_pred HHhhhcCCccccccchhhhhccccccccccCCccEEEEEecccc-hhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcC
Q 003460 118 LQDLTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYAL-DARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS 196 (818)
Q Consensus 118 L~~l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~-~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s 196 (818)
|..+........+.++...+.++... ....+.+++|+||+.++ ...+.+++|.+|+|+++.+.++.|++.|+.....+
T Consensus 103 L~~l~~~~~~~~~~ls~g~~~r~~~~-~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~~~~~r~~~r~~~~G~~ 181 (245)
T 2jeo_A 103 LKNIVEGKTVEVPTYDFVTHSRLPET-TVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRRGRD 181 (245)
T ss_dssp HHHHHTTCCEEECCEETTTTEECSSC-EEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHHHHHHHHHHHHTC---C
T ss_pred HHHHHCCCCeecccccccccCccCce-EEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHHHHHHHHHHHHHHcCCC
Confidence 88777666777788888888776442 23344679999999887 47788889999999999999999999998743457
Q ss_pred HHHHHHh----hchhhhhccCCccccCcEEEECC
Q 003460 197 LDSLIDS----IFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 197 ~e~~~~~----~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
.+++.++ ..+.++++++|.++.||+||++.
T Consensus 182 ~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~ 215 (245)
T 2jeo_A 182 LEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRG 215 (245)
T ss_dssp HHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESS
T ss_pred HHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCC
Confidence 7776654 35688899999999999999654
No 30
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.59 E-value=1.6e-15 Score=153.35 Aligned_cols=145 Identities=18% Similarity=0.253 Sum_probs=105.3
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccccc--------------CCCCCcccHHHHHHHHHh----
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE--------------GNDLDSIDFDALVQNLQD---- 120 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~--------------~~~~~~~d~~~l~~~L~~---- 120 (818)
+....+|||+|++||||||+|+.|++.+|+++|++|++++.... .+ .+.+|...|.+.+..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHH
Confidence 45578999999999999999999999889999999999663321 11 456777777664321
Q ss_pred hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (818)
Q Consensus 121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~ 200 (818)
+...+.+.+|.+......+... ...++|+|++++++..+...+|.+|||++|.+++++|.+
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~~------~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli------------- 148 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIINK------TSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNR------------- 148 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT------CCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCS-------------
T ss_pred HHHHHhhhCHHHHHHHHHHHHH------cCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHH-------------
Confidence 2223345566665554433221 135899999999998888899999999999999988871
Q ss_pred HHhhchhhhhccCCccccCcEEEECCC
Q 003460 201 IDSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 201 ~~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
+.++|. ++++.++.||+||+|+.
T Consensus 149 -~~q~~~---~~~~~~~~AD~vI~n~~ 171 (192)
T 2grj_A 149 -EADRRL---KFQEDIVPQGIVVANNS 171 (192)
T ss_dssp -SHHHHH---TTCTTCCCCSEEEECSS
T ss_pred -HhcCCc---hhhhHHhcCCEEEECCC
Confidence 122344 34556789999999984
No 31
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.51 E-value=1.1e-14 Score=147.18 Aligned_cols=149 Identities=15% Similarity=0.221 Sum_probs=110.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh----------hhcccCCCcccccHHHHHHHH----HH
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ----------VKDFKYDDFSSLDLSLLSKNI----SD 579 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~----------~~~~~~d~p~t~D~~ll~~~L----~~ 579 (818)
.....+|||+|++||||||+|+.|++.+|+.++++|++++... .+...++ ++++|...|.+.+ ..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~ 87 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESREN 87 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHH
Confidence 3457899999999999999999999989999999999987621 1222234 7789998887743 22
Q ss_pred HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (818)
Q Consensus 580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (818)
++..+.+..|.++.....+.. ....++|+|+.+++...+...+|..|||++|.+++++|.+.
T Consensus 88 ~~~l~~i~hP~i~~~~~~~~~-------~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli~----------- 149 (192)
T 2grj_A 88 LKKLELLVHPLMKKRVQEIIN-------KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNRE----------- 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCSS-----------
T ss_pred HHHHHhhhCHHHHHHHHHHHH-------HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHHH-----------
Confidence 344455778887766544321 01368999999988877888999999999999999999811
Q ss_pred hhhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 660 QNDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 660 ~~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
.|+.. |+++.++.||++|+|+-
T Consensus 150 -~q~~~--------~~~~~~~~AD~vI~n~~ 171 (192)
T 2grj_A 150 -ADRRL--------KFQEDIVPQGIVVANNS 171 (192)
T ss_dssp -HHHHH--------TTCTTCCCCSEEEECSS
T ss_pred -hcCCc--------hhhhHHhcCCEEEECCC
Confidence 12211 34566789999999873
No 32
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=99.48 E-value=7.4e-14 Score=145.40 Aligned_cols=139 Identities=12% Similarity=0.033 Sum_probs=110.4
Q ss_pred cccccccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEe--------------
Q 003460 252 AFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVG-------------- 317 (818)
Q Consensus 252 ~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~-------------- 317 (818)
.......|.|+|||+|+++++..+.++ |||..+ + +|+|+|...+..-....+.|++..
T Consensus 47 ~~~~~~~q~n~YfDTpd~~L~~~~~aL-----RiR~~~-~--~tlK~p~~~g~~~~~~ey~e~~~~~~~~~~~~~~~~~~ 118 (234)
T 3bhd_A 47 TLEYRVTFRDTYYDTPELSLMQADHWL-----RRREDS-G--WELKCPGAAGVLGPHTEYKELTAEPTIVAQLCKVLRAD 118 (234)
T ss_dssp EEEEEEEEEEEEEECTTCHHHHTTCEE-----EEETTT-E--EEEEEESSBTTBCTTSEEEEECSHHHHHHHHHHHHTC-
T ss_pred CCCCcceEEEEEeeCCChHHHhCCcEE-----EEECCC-C--eEEecCCccCccCCcceeccccCccchhhhhhhhhcCC
Confidence 344566799999999999999999999 999765 3 899987644321000233344432
Q ss_pred c----cHHHHHHhcCCceeEEEEEEEEEEEe--------C-CEEEEEeccCCCCCCeEEEEec--C-------HHHHHHH
Q 003460 318 R----MTLGGLLDLGYSVVASYKRASTYVVY--------G-NLSVSFETIDTLDETFMVLRGT--N-------RKTVGAE 375 (818)
Q Consensus 318 v----~~~~~L~~LGf~~~~~~~K~R~~~~~--------~-~~~i~lD~v~~lg~~fvEiE~~--~-------~~~i~~~ 375 (818)
+ .+..+|..+||.++++++|.|+.|.+ + +++|+||.++ +|.+|+|||.. + .+.+.++
T Consensus 119 ~~~~~~~~~~L~~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~l 197 (234)
T 3bhd_A 119 GLGAGDVAAVLGPLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHRL 197 (234)
T ss_dssp --CCSSHHHHHHHHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHHH
Confidence 1 46677889999999999999999999 8 9999999999 99999999976 2 2578899
Q ss_pred HHHcCCCCCccchhHHHHHHhhcC
Q 003460 376 ALRMGINGPWITKSYLEMVLEKKG 399 (818)
Q Consensus 376 ~~~Lgl~~~~~~~sYlel~l~~~~ 399 (818)
|++|||+.+...++|++.+++.+.
T Consensus 198 a~~Lgl~~~~~~~~k~~~~l~~~~ 221 (234)
T 3bhd_A 198 SSMLGVPAQETAPAKLIVYLQRFR 221 (234)
T ss_dssp HHHHTCCTTCCCCCHHHHHHHHHC
T ss_pred HHHcCCCccccchHHHHHHHHHhC
Confidence 999999988889999998887553
No 33
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.48 E-value=6.5e-14 Score=149.86 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=103.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCC-----------------CCCcccHHHHHHHHHh--
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGN-----------------DLDSIDFDALVQNLQD-- 120 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~-----------------~~~~~d~~~l~~~L~~-- 120 (818)
+++++|+|+|++||||||+|+.|+ .+|+.+|++|++++.....+ ..+.+|...+...+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~ 151 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK 151 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence 567899999999999999999999 58999999999854321111 1124555544332211
Q ss_pred --hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHH
Q 003460 121 --LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLD 198 (818)
Q Consensus 121 --l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e 198 (818)
+...+.+.+|.+.......... .......+||+||.+++...+...+|.+|||++|.+++++|...|+. .+.+
T Consensus 152 ~~~~~l~~i~~P~i~~~~~~~~~~--~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~g---~s~e 226 (281)
T 2f6r_A 152 KQMKILTDIVWPVIAKLAREEMDV--AVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERDG---LSEA 226 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHC---CCHH
T ss_pred HHHHHhhcccChHHHHHHHHHHHH--HhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcCC---CCHH
Confidence 1112234455554444433321 11223468999999988777778899999999999999999999973 3444
Q ss_pred HHHHh---hchhhhhccCCccccCcEEEECCC
Q 003460 199 SLIDS---IFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 199 ~~~~~---~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
++.++ +.+..+. ...||++|+|+.
T Consensus 227 ~~~~ri~~q~~~~~~-----~~~AD~vIdn~~ 253 (281)
T 2f6r_A 227 AAQSRLQSQMSGQQL-----VEQSNVVLSTLW 253 (281)
T ss_dssp HHHHHHHTSCCHHHH-----HHTCSEEEECSS
T ss_pred HHHHHHHHcCChHhh-----HhhCCEEEECCC
Confidence 44443 3333222 246999999984
No 34
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.43 E-value=5e-13 Score=135.75 Aligned_cols=159 Identities=14% Similarity=0.200 Sum_probs=104.5
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceeccccc----------CCCCCcccHHHHHHHHHhhhcCCcc
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDE----------GNDLDSIDFDALVQNLQDLTEGKDT 127 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~~~----------~~~~~~~d~~~l~~~L~~l~~~~~i 127 (818)
.+.+.+|+|+|++||||||+++.|++.+ ++.++++|+++..... .+.+++++...+.+.+..+..+ .
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~--~ 95 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMES--A 95 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHH--H
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhC--C
Confidence 4567899999999999999999999988 8999999998653211 1122346666666655543321 1
Q ss_pred ccccchhhhhccccccccccCCccEEEEEecccch-hhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhch
Q 003460 128 LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD-ARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFP 206 (818)
Q Consensus 128 ~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~-~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p 206 (818)
..|...... .......++|+||++++. +.+.+.+|.+||++++.+.++.|+..|..........+...+++
T Consensus 96 ~~~~~~~~~--------~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~e~~~~~~~~~~~~ 167 (207)
T 2qt1_A 96 RHSVVSTDQ--------ESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWP 167 (207)
T ss_dssp TTSSCCC-------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSSCCCTTHHHHTHHH
T ss_pred CCCCcCCCe--------eecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCccchHHHHHHHHhH
Confidence 112211111 112345689999998886 56778899999999999999999888753222222233345666
Q ss_pred hhhhccCCccccCcEE--EECCC
Q 003460 207 LFRKHIEPDLHHAQIR--INNRF 227 (818)
Q Consensus 207 ~~~~~Iep~~~~ADiI--I~N~~ 227 (818)
.|..+++.....||.+ |+|+.
T Consensus 168 ~~~~~~~~~~~~~~~v~~Id~~~ 190 (207)
T 2qt1_A 168 MYLKYRQEMQDITWEVVYLDGTK 190 (207)
T ss_dssp HHHHHHHHGGGCSSCCEEEETTS
T ss_pred HHHHHHHHHHhcCCeEEEecCCC
Confidence 6655554445667755 78873
No 35
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.40 E-value=2.2e-13 Score=138.12 Aligned_cols=152 Identities=19% Similarity=0.211 Sum_probs=90.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCC-----------------CCcccHHHHHHHHHh----
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQD---- 120 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~~~d~~~l~~~L~~---- 120 (818)
+++|||+|++||||||+++.|++ +|..++++|++++.....+. .+..+...+.+.+..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 46899999999999999999988 89999999998764322110 011222222221110
Q ss_pred hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHH
Q 003460 121 LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSL 200 (818)
Q Consensus 121 l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~ 200 (818)
+.....+.+|.+........ .......+|+||.++++..+...+|.+|||+++.+++++|...|+. .+.+.+
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~-----~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~---~~~e~~ 152 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKL-----AEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRDN---NNFEQI 152 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----HTCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC--------CHHHH
T ss_pred HHHHHhccCHHHHHHHHHHH-----HhcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcCC---CCHHHH
Confidence 00001122233322221111 1112347899999887765778899999999999999999988863 244444
Q ss_pred HHhh---chhhhhccCCccccCcEEEECCC
Q 003460 201 IDSI---FPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 201 ~~~~---~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
.+++ .+... ..+.||++|+|+.
T Consensus 153 ~~r~~~q~~~~~-----~~~~ad~vIdn~~ 177 (206)
T 1jjv_A 153 QRIMNSQVSQQE-----RLKWADDVINNDA 177 (206)
T ss_dssp HHHHHHSCCHHH-----HHHHCSEEEECCS
T ss_pred HHHHHhcCChHH-----HHHhCCEEEECCC
Confidence 4333 23322 2457999999984
No 36
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.40 E-value=2.3e-13 Score=138.91 Aligned_cols=160 Identities=21% Similarity=0.177 Sum_probs=114.7
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch----h-----h----hhcccCCCcccccHHHHHHHHH--
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS----E-----Q----VKDFKYDDFSSLDLSLLSKNIS-- 578 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~----~-----~----~~~~~~d~p~t~D~~ll~~~L~-- 578 (818)
....+-||++|++||||||+++.|++ +|++++++|...+. . + .+..-++.-+++|...|.+.+.
T Consensus 6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d 84 (210)
T 4i1u_A 6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSD 84 (210)
T ss_dssp CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHC
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCC
Confidence 34578899999999999999999998 99999999987653 1 1 1111234457899999888663
Q ss_pred --HHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccC
Q 003460 579 --DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (818)
Q Consensus 579 --~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg 655 (818)
.++.-+.+.+|..-.....+.. ..+.+++++|..+++. ..+...+|..|+|++|.++++.|.+.|| |
T Consensus 85 ~~~~~~L~~i~HP~I~~~~~~~~~------~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g 154 (210)
T 4i1u_A 85 EDARRRLEAITHPLIRAETEREAR------DAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN----G 154 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------TCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH------hcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----C
Confidence 2333345666765443322221 1134689999999999 8999999999999999999999999997 4
Q ss_pred cccch-hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 656 CFMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 656 ~~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
.+.++ ........|..++ .+.||+||+|+
T Consensus 155 ~s~eea~~ri~~Q~~~eek-----~~~AD~VIdN~ 184 (210)
T 4i1u_A 155 FTREQVEAIIARQATREAR-----LAAADDVIVND 184 (210)
T ss_dssp CCHHHHHHHHHHSCCHHHH-----HHTCSEEEECS
T ss_pred CCHHHHHHHHHHcCChHHH-----HHhCCEEEECC
Confidence 44433 2344444554333 47899999987
No 37
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.39 E-value=9.8e-13 Score=133.53 Aligned_cols=163 Identities=19% Similarity=0.263 Sum_probs=110.2
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhhhc------ccCCCcccccHHHHHHHHHHHhcCCc
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKD------FKYDDFSSLDLSLLSKNISDIRNGRR 585 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~~~~~~~------~~~d~p~t~D~~ll~~~L~~L~~g~~ 585 (818)
..+.+.+|||+|++||||||+++.|+..+ ++.++++|+|+.+.+... .+++.++++|...+.+.+..+.++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~- 95 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA- 95 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH-
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC-
Confidence 34567899999999999999999999988 899999999987643211 1234566788888888776654421
Q ss_pred eecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHH
Q 003460 586 TKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIM 664 (818)
Q Consensus 586 v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~ 664 (818)
..|.... ......+.+++|+||++++. +.+.+.+|..+|++++.+.++.|+..|.... ... ...+.
T Consensus 96 -~~~~~~~---------~~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~--e~~-~~~~~ 162 (207)
T 2qt1_A 96 -RHSVVST---------DQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVYQP--PDS-PGYFD 162 (207)
T ss_dssp -TTSSCCC--------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCCSS--CCC-TTHHH
T ss_pred -CCCCcCC---------CeeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCCCc--cch-HHHHH
Confidence 1221111 11112346799999998875 5677889999999999999999987774211 111 11233
Q ss_pred HhhcchhhhhccccCCcccEE--EeCC
Q 003460 665 MTVFPMFQQHIEPHLVHAHLK--IRND 689 (818)
Q Consensus 665 ~~v~p~~~~~I~p~~~~ADiv--I~n~ 689 (818)
..+++.|..+++.....||.+ |+|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~v~~Id~~ 189 (207)
T 2qt1_A 163 GHVWPMYLKYRQEMQDITWEVVYLDGT 189 (207)
T ss_dssp HTHHHHHHHHHHHGGGCSSCCEEEETT
T ss_pred HHHhHHHHHHHHHHHhcCCeEEEecCC
Confidence 467777776655555566655 7765
No 38
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.37 E-value=1.4e-12 Score=133.50 Aligned_cols=156 Identities=19% Similarity=0.129 Sum_probs=94.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCC-----------------CCcccHHHHHHHHHh---
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQD--- 120 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~~~d~~~l~~~L~~--- 120 (818)
.+++|+|+|++||||||+++.|++ +|..++++|.+++.....+. .+.++...+...+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 468999999999999999999998 99999999998764332111 112333333322211
Q ss_pred -hhcCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHH
Q 003460 121 -LTEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (818)
Q Consensus 121 -l~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~ 199 (818)
+...+.+..|.+......... .....++++|+.+++...+...+|.+|||+++.+.+++|...|+.........
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~-----~~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~ 156 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQ-----QATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQ 156 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HCCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHH-----hcCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcCCCCHHHHHH
Confidence 000011222332222111111 00234788999887765566789999999999999999998886322112222
Q ss_pred HHHhhchhhhhccCCccccCcEEEECCC
Q 003460 200 LIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 200 ~~~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
......+.+.. ...||++|+|+.
T Consensus 157 ~~~~~~~~~~~-----~~~ad~vId~~~ 179 (218)
T 1vht_A 157 ILAAQATREAR-----LAVADDVIDNNG 179 (218)
T ss_dssp HHHHSCCHHHH-----HHHCSEEEECSS
T ss_pred HHHhcCChHHH-----HHhCCEEEECCC
Confidence 23333333322 456899999985
No 39
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.36 E-value=5.9e-13 Score=142.43 Aligned_cols=163 Identities=13% Similarity=0.164 Sum_probs=104.2
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h-hcc--c-CCCcccccHHHHHHHH---
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V-KDF--K-YDDFSSLDLSLLSKNI--- 577 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~-~~~--~-~d~p~t~D~~ll~~~L--- 577 (818)
.++|++|||+|++||||||+|+.|+ .+|+.++++|++++..- . ..+ . ++..+.+|...+...+
T Consensus 72 ~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 72 PSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp CTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 3468999999999999999999999 58999999999954310 0 011 1 1122456766654322
Q ss_pred -HHHhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCc
Q 003460 578 -SDIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGC 656 (818)
Q Consensus 578 -~~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~ 656 (818)
..+...+.+..|.+.....++.. ... ..+.++||+||.+++...+...+|..||+++|.++++.|.+.|+ |.
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~--~~~-~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~----g~ 223 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMD--VAV-AKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD----GL 223 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHH-HTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----CC
T ss_pred HHHHHHhhcccChHHHHHHHHHHH--HHh-ccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC----CC
Confidence 12222234556665544433321 111 12347899999988877777889999999999999999999886 33
Q ss_pred ccch-hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 657 FMSQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 657 ~~~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
+.+. .+.+....+.. .++ ..||++|+|+
T Consensus 224 s~e~~~~ri~~q~~~~-~~~----~~AD~vIdn~ 252 (281)
T 2f6r_A 224 SEAAAQSRLQSQMSGQ-QLV----EQSNVVLSTL 252 (281)
T ss_dssp CHHHHHHHHHTSCCHH-HHH----HTCSEEEECS
T ss_pred CHHHHHHHHHHcCChH-hhH----hhCCEEEECC
Confidence 3332 12222223322 221 3689999986
No 40
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.33 E-value=6e-13 Score=134.57 Aligned_cols=150 Identities=12% Similarity=0.127 Sum_probs=91.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCC-----------------CCcccHHHHHHHHHhhhcC
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGND-----------------LDSIDFDALVQNLQDLTEG 124 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~-----------------~~~~d~~~l~~~L~~l~~~ 124 (818)
|++|+|+|++||||||+++.|++ +|+.++++|++++.....+. .+..+...+.+. ...
T Consensus 1 m~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~----~f~ 75 (204)
T 2if2_A 1 MKRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADI----VFK 75 (204)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHT----TSS
T ss_pred CeEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHH----HhC
Confidence 45799999999999999999999 99999999998765332110 012222222211 111
Q ss_pred Cc--------cccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcC
Q 003460 125 KD--------TLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCS 196 (818)
Q Consensus 125 ~~--------i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s 196 (818)
.+ +..|.+........ .......++|+||.+++...+...+|.+|||+++.+++++|...|. .+
T Consensus 76 ~~~~~~~l~~l~~~~v~~~~~~~~----~~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~----~~ 147 (204)
T 2if2_A 76 DEEKLRKLEEITHRALYKEIEKIT----KNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKRG----MS 147 (204)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHH----HHSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHTC----CC
T ss_pred CHHHHHHHHHhhCHHHHHHHHHHH----HhccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHcC----CC
Confidence 10 01111111110000 0011115899999988877777789999999999999999998872 34
Q ss_pred HHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460 197 LDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 197 ~e~~~~~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
.+++.+++...+.. .+....||++|+|+
T Consensus 148 ~~~~~~~~~~~~~~--~~~~~~ad~vId~~ 175 (204)
T 2if2_A 148 EEDFERRWKKQMPI--EEKVKYADYVIDNS 175 (204)
T ss_dssp HHHHHHHHTTSCCH--HHHGGGCSEECCCS
T ss_pred HHHHHHHHHhCCCh--hHHHhcCCEEEECC
Confidence 44444433222111 12356789999988
No 41
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.30 E-value=1e-12 Score=132.21 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=93.8
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-cCC--------C---CCcccHHHHHHHHHhh----h
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-EGN--------D---LDSIDFDALVQNLQDL----T 122 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-~~~--------~---~~~~d~~~l~~~L~~l----~ 122 (818)
.+++.+|+|+|++||||||+++.|++. |+.++++|++++... ... . .+.++...+.+.+..- .
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~ 83 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLK 83 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHH
Confidence 346789999999999999999999997 999999999865332 100 0 1123333332211100 0
Q ss_pred cCCccccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHH
Q 003460 123 EGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLID 202 (818)
Q Consensus 123 ~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~ 202 (818)
..+.+.+|.+. ...+.. .......+||+||.+++...+...+|.+|||+++.+.++.|...|+..........+.
T Consensus 84 ~l~~~~~~~i~---~~~i~~--~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~~~~~~~~~~i~ 158 (203)
T 1uf9_A 84 ALEAVVHPEVR---RLLMEE--LSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSGLSREEVLARER 158 (203)
T ss_dssp HHHHHHHHHHH---HHHHHH--HHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTCCTTHHHHHHHT
T ss_pred HHHHHhChHHH---HHHHHH--hhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 00001112111 011100 0122256899999988776666778999999999999999998886322222222222
Q ss_pred hhchhhhhccCCccccCcEEEECCC
Q 003460 203 SIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 203 ~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
...+.+. ....||++|+|+.
T Consensus 159 ~~~~~~~-----~~~~ad~vId~~~ 178 (203)
T 1uf9_A 159 AQMPEEE-----KRKRATWVLENTG 178 (203)
T ss_dssp TSCCHHH-----HHHHCSEEECCSS
T ss_pred HCCChhH-----HHHhCCEEEECCC
Confidence 2333322 1457899998883
No 42
>3v85_A CYTH-like phosphatase; CYTH domain, hydrolase; HET: CIT; 1.90A {Arabidopsis thaliana}
Probab=99.26 E-value=4.4e-12 Score=129.85 Aligned_cols=129 Identities=9% Similarity=0.049 Sum_probs=105.6
Q ss_pred ccccccccccccceeeccCCCCCcchhhhccCCeeeEeeeCC-----------EEEEEEcceeecCCCcccCceeEEEEe
Q 003460 249 SISAFQGNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGI-----------RYYLSIGDQRIVDKNFIIRPKAEFEVG 317 (818)
Q Consensus 249 ~~~~~~~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~-----------~~~lt~Kg~~~~~~~~~~k~r~E~ev~ 317 (818)
.+..+.....|.|+|||+|+++++.++.++ |||..++ +..+|||+|.....+. ..+.|.+..
T Consensus 22 ~~~~~~~~~~~~~~y~dt~~~~l~~~~~~l-----r~R~~~~~~e~~~~~~~~~~~~TlK~~~~~~~~~--~~~~e~~~~ 94 (210)
T 3v85_A 22 LTPYHLKTLHQRNTFFDTPKNDLSLRRAVL-----RLRFLQNAAVSAASPSPPRCIVSLKAKPTLANGI--SRVEEDEEE 94 (210)
T ss_dssp TGGGEEEEEEEEEEEEECTTCHHHHTTEEE-----EEEEEEC------CCCCCEEEEEEEEEEEEETTE--EEEEEEEEE
T ss_pred ccccccceEEEEEEEEeCCCHHHHhCCcEE-----EEEEeCCccceeccCCCcceEEEEecCCcCCCCc--eeEEEEeec
Confidence 344556677899999999999999999999 9997643 6789999999888885 778888877
Q ss_pred c---c------------------------HHHHHHhcCCceeEEEEEEEEEEEeCCEEEEEeccC-CCCCCeEEEEec--
Q 003460 318 R---M------------------------TLGGLLDLGYSVVASYKRASTYVVYGNLSVSFETID-TLDETFMVLRGT-- 367 (818)
Q Consensus 318 v---~------------------------~~~~L~~LGf~~~~~~~K~R~~~~~~~~~i~lD~v~-~lg~~fvEiE~~-- 367 (818)
+ . +..++..+||.+.+.++|.|..|.+++..|+||.+. ..|. |+|||..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~~~~l~~~~~~~t~R~e~~~~~~~l~LD~~~~~~g~-~~ELEle~~ 173 (210)
T 3v85_A 95 IEYWIGKECVESPAKLSDIGSRVLKRVKEEYGFNDFLGFVCLGGFENVRNVYEWRGVKLEVDETKYDFGN-CYEIECETE 173 (210)
T ss_dssp ECHHHHHHHHHCGGGGGGCCCHHHHHHHHHHTCSCSTTCEEEEEEEEEEEEEEETTEEEEEEEEEETTEE-EEEEEEECS
T ss_pred CChhHHHHhhhhhhccccCChHHHHHHHHhhccccccceEEEEEEEEEEEEEEeCCEEEEEeeeeeCCcE-EEEEEEEeC
Confidence 5 1 122345689999999999999999999999999998 4577 9999987
Q ss_pred CH----HHHHHHHHHcCCCCCc
Q 003460 368 NR----KTVGAEALRMGINGPW 385 (818)
Q Consensus 368 ~~----~~i~~~~~~Lgl~~~~ 385 (818)
|. +.+.++++++||+-..
T Consensus 174 d~e~~~~~~~~lL~~~gI~~~~ 195 (210)
T 3v85_A 174 EPERVKTMIEEFLTEEKIEFSN 195 (210)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcCc
Confidence 33 6678899999997644
No 43
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.25 E-value=2.6e-12 Score=140.05 Aligned_cols=170 Identities=18% Similarity=0.160 Sum_probs=117.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCC-CCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGN-DLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~-~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (818)
.+|+|+||+||||||||..|++.+++.+|++|++ |+++.... .+..-+...+..+|.++..+.. .++.+++....+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~-~~~~~dF~~~a~ 86 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDA-SFSAYEFKKRAE 86 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTS-CCCHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHHHHHH
Confidence 6899999999999999999999999999999998 88765432 1211122222223334444444 567777776665
Q ss_pred ccccccccCCccEEEEEecccchhhhhcCCCEEEEEE-cCHH--HHHHHHHHhccCCCc--CHHHHHHhhchhhhhccCC
Q 003460 140 IGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVV-GGVH--FSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEP 214 (818)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vd-a~~e--~~l~Rri~Rd~~~~~--s~e~~~~~~~p~~~~~Iep 214 (818)
.....+..+...+||++|.+++.+.+...+| +|++ ++.+ .+++|++.| ...++ .+.+.++.+.|.+.++|.|
T Consensus 87 ~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~~l~~~L~~vdP~~a~~I~p 163 (340)
T 3d3q_A 87 KYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNNKLHEYLASFDKESAKDIHP 163 (340)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHHHHHHHHHHHCHHHHHHSCT
T ss_pred HHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHHHHHHHHHhhCcHHHhhcCc
Confidence 4333334456678889999988888887776 6788 8887 678888888 55543 3445566778888887655
Q ss_pred ccccCcEEEECCCCCChhhhhhcccCccc-CCcccccccc
Q 003460 215 DLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAF 253 (818)
Q Consensus 215 ~~~~ADiII~N~~~~~~~~~~~~l~~~~~-~l~~~~~~~~ 253 (818)
|| ++.++++++. ..+|...+.+
T Consensus 164 ----------~d-------~~Ri~RALEv~~~tG~~~s~~ 186 (340)
T 3d3q_A 164 ----------NN-------RKRVLRAIEYYLKTKKLLSSR 186 (340)
T ss_dssp ----------TC-------HHHHHHHHHHHHHHCSCSHHH
T ss_pred ----------cC-------chhhhhHHHHHHHhCCChHHH
Confidence 56 7888888887 6667665544
No 44
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.24 E-value=1.8e-11 Score=123.51 Aligned_cols=155 Identities=14% Similarity=0.140 Sum_probs=90.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccC---CCCCcccHHHHHHHHHhhh--------------cCCc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEG---NDLDSIDFDALVQNLQDLT--------------EGKD 126 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~---~~~~~~d~~~l~~~L~~l~--------------~~~~ 126 (818)
+|+|+|++||||||+|+.|++.+|+.++++|++++..... ......+.+.+.+.+..+. .|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 8999999999999999999999999999999998743210 0011112233333332211 1111
Q ss_pred cccccchhh---------hhcccccc----ccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCC
Q 003460 127 TLIPMFDYQ---------QKNRIGSK----VIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGD 193 (818)
Q Consensus 127 i~~p~~d~~---------~~~~~~~~----~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~ 193 (818)
+..+..... .++.+... ..... ..+|+||..++ ..+.+.+|++|||++|.+.+++|+..|+.
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r~~-- 158 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARERP-- 158 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHTSS--
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhhcc--
Confidence 110000000 00100000 00011 47899999877 34556789999999999999999998864
Q ss_pred CcCHHHHHHhhc---hhhhhccCCccccCc-EEEECCC
Q 003460 194 SCSLDSLIDSIF---PLFRKHIEPDLHHAQ-IRINNRF 227 (818)
Q Consensus 194 ~~s~e~~~~~~~---p~~~~~Iep~~~~AD-iII~N~~ 227 (818)
.+.+++.+.+. +.+..+. ...|| ++|+|+.
T Consensus 159 -~~~~~~~~~~~~R~~~~~~~~---~~~ad~~~Id~~~ 192 (208)
T 3ake_A 159 -QAYEEVLRDLLRRDERDKAQS---APAPDALVLDTGG 192 (208)
T ss_dssp -SCHHHHHHHHHHHHHTC--CC---CCCTTCEEEETTT
T ss_pred -cCHHHHHHHHHHHHHHHhhcc---cCCCCEEEEECCC
Confidence 33444433322 2222111 45688 9999873
No 45
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.21 E-value=8.2e-12 Score=126.50 Aligned_cols=158 Identities=20% Similarity=0.212 Sum_probs=89.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----------hccc---CCCcccccHHHHHHHHHH----
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----------KDFK---YDDFSSLDLSLLSKNISD---- 579 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----------~~~~---~d~p~t~D~~ll~~~L~~---- 579 (818)
+++|||+|++||||||+++.|+. +|..+++.|++++.... ..+. +...+..+...+.+.+..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~ 80 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDED 80 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHH
Confidence 46899999999999999999988 89999999999864110 0011 111123343333322100
Q ss_pred HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccc
Q 003460 580 IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS 659 (818)
Q Consensus 580 L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~ 659 (818)
+.....+..|.+........ . ......+|+||.+++...+...+|..||++++.++++.|...|+ |.+.+
T Consensus 81 ~~~l~~~~~p~v~~~~~~~~-----~-~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~e 150 (206)
T 1jjv_A 81 KLWLNNLLHPAIRERMKQKL-----A-EQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNFE 150 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----H-TCCSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHH
T ss_pred HHHHHhccCHHHHHHHHHHH-----H-hcCCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 00001123344333221111 0 01135789999877665477889999999999999999999886 33332
Q ss_pred h-hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 660 Q-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 660 ~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
. .+......+.. +....||++|+|+-
T Consensus 151 ~~~~r~~~q~~~~-----~~~~~ad~vIdn~~ 177 (206)
T 1jjv_A 151 QIQRIMNSQVSQQ-----ERLKWADDVINNDA 177 (206)
T ss_dssp HHHHHHHHSCCHH-----HHHHHCSEEEECCS
T ss_pred HHHHHHHhcCChH-----HHHHhCCEEEECCC
Confidence 2 12222222222 22347999999874
No 46
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.20 E-value=1.3e-11 Score=120.22 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=88.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~ 142 (818)
++|+|+|++||||||+|+.| +.+|..++++|++.+...........+...+...+... .+.... .....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~----- 70 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREI-YGDGVV----ARLCV----- 70 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHH-HCTTHH----HHHHH-----
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhh-CCHHHH----HHHHH-----
Confidence 47999999999999999999 88999999999986642211112222222222222211 011111 00000
Q ss_pred cccccCCccEEEEEecccch--hhhhc---CCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHhhchhhhhccCCcc
Q 003460 143 KVIKGASSGVVIVDGTYALD--ARLRS---LLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEPDL 216 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~--~~l~~---~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~~~p~~~~~Iep~~ 216 (818)
..+.......+|+||..... ..+.. ..+..|||++|.+++.+|...|+.... .+.+++.+++.......+.+..
T Consensus 71 ~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 150 (179)
T 3lw7_A 71 EELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVI 150 (179)
T ss_dssp HHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhHH
Confidence 01111335679999973222 23333 335899999999999999999875432 4566665543221111123345
Q ss_pred ccCcEEEECCC
Q 003460 217 HHAQIRINNRF 227 (818)
Q Consensus 217 ~~ADiII~N~~ 227 (818)
..||++|+|+.
T Consensus 151 ~~ad~vId~~~ 161 (179)
T 3lw7_A 151 AMADYIITNDS 161 (179)
T ss_dssp HTCSEEEECCS
T ss_pred HhCCEEEECCC
Confidence 78999999984
No 47
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.19 E-value=1.3e-12 Score=142.42 Aligned_cols=153 Identities=14% Similarity=0.204 Sum_probs=101.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf--y~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~ 594 (818)
+.+|+|+||+||||||||..|+..+++.+||+|+| |+...... ..|..-+...+..+|..+..+.. ..|.|||.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~T---akp~~eE~~~v~hhl~di~~~~~-~~~~~dF~ 82 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGT---AKVTTEEMEGIPHYMIDILPPDA-SFSAYEFK 82 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTT---TCCCTTTTTTCCEESSSCBCTTS-CCCHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccc---cCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHH
Confidence 36899999999999999999999999999999999 77532110 00100000000111222333333 56777777
Q ss_pred ccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEE-cChh--HHHHHHHhcCccccCcccchhhHHHhhcchh
Q 003460 595 TGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVV-GGVH--SHLISRVQRDKSRMGCFMSQNDIMMTVFPMF 671 (818)
Q Consensus 595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~-~~~d--~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~ 671 (818)
.+.+...... ...+..+||++|..++.+.+.+.+| +|++ ++.+ .|+.|++.| ..++|.. ...+++..+.|.+
T Consensus 83 ~~a~~~i~~i-~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~~-~l~~~L~~vdP~~ 157 (340)
T 3d3q_A 83 KRAEKYIKDI-TRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNNN-KLHEYLASFDKES 157 (340)
T ss_dssp HHHHHHHHHH-HHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCHH-HHHHHHHHHCHHH
T ss_pred HHHHHHHHHH-HhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCHH-HHHHHHHhhCcHH
Confidence 6544321111 1234567888888877788888776 6777 7777 789999999 8888864 2367888999999
Q ss_pred hhhcccc
Q 003460 672 QQHIEPH 678 (818)
Q Consensus 672 ~~~I~p~ 678 (818)
.++|+|.
T Consensus 158 a~~I~p~ 164 (340)
T 3d3q_A 158 AKDIHPN 164 (340)
T ss_dssp HHHSCTT
T ss_pred HhhcCcc
Confidence 9999885
No 48
>3tj7_A GBAA_1210 protein; structural genomics, adenosine monophosphate, center for STR genomics of infectious diseases, csgid; HET: AMP; 2.10A {Bacillus anthracis} PDB: 3sy3_A*
Probab=99.19 E-value=9.7e-11 Score=118.18 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=99.4
Q ss_pred ccccccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec----------------
Q 003460 255 GNEAQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---------------- 318 (818)
Q Consensus 255 ~~~~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---------------- 318 (818)
....+.++|||.|+++++.++.++ |||..|++..+|+|+|... .+.|+++.+
T Consensus 32 ~~~~~~n~YfDTpd~~L~~~~~~L-----RiR~~~~~~~~TlK~~~~~-------g~~E~~~~l~~~ea~~~l~~~~~p~ 99 (195)
T 3tj7_A 32 VFTKQVNHYFETPNSSLKEAGSAL-----RIRHKGETYTLTLKQPAEV-------GLLETHQVVTENEAKMMMETNVIIS 99 (195)
T ss_dssp CCEEEEEEEEECTTCHHHHTTCEE-----EEEEETTEEEEEEEEECSS-------SEEEEEEEECHHHHHHHHHSSCCCS
T ss_pred ceEEEEEEEEeCCcHhHHhCCCEE-----EEEeECCeEEEEEeeCCCC-------CceEEEeeCCHHHHHHHhhcCCCCh
Confidence 456789999999999999999999 9999999999999987643 257888777
Q ss_pred -cHHHHHHhcCCce-----eEEEEEEEEEEEeCCEEEEEeccCCCCCC-e-EEEEecCH----HHHHHHHHHcCCCCCc
Q 003460 319 -MTLGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDET-F-MVLRGTNR----KTVGAEALRMGINGPW 385 (818)
Q Consensus 319 -~~~~~L~~LGf~~-----~~~~~K~R~~~~~~~~~i~lD~v~~lg~~-f-vEiE~~~~----~~i~~~~~~Lgl~~~~ 385 (818)
.+.++|..+||.. ++.+++.|..|.+.+..++||++.++|.. | +|+|..+. +.+.++++.+|+....
T Consensus 100 ~~i~~~l~~~g~~~~~l~~~g~l~t~R~e~~~~~g~l~LD~~~y~~~~dyElE~E~~d~~~~~~~~~~lL~~~gi~~~~ 178 (195)
T 3tj7_A 100 GAVMNQLCKLQIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRH 178 (195)
T ss_dssp SHHHHHHHHHTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEEEESCHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHcCCCccceEEEEEEEEEEEEEEecCCEEEEEEecCCCcEEEEEEEEeCCHHHHHHHHHHHHHHCCCCcCC
Confidence 3777999999887 59999999999998889999999988863 3 55554443 6788999999998754
No 49
>2gfg_A BH2851; antiparallel barrel, structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, unknow function; 2.12A {Bacillus halodurans}
Probab=99.15 E-value=2.3e-10 Score=115.59 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=97.0
Q ss_pred cccceeeccCCCCCcchhhhccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEecc-----------------H
Q 003460 258 AQTDNFIEMYLRPPSATEEARINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGRM-----------------T 320 (818)
Q Consensus 258 ~~~d~y~~~~~r~~~~~dea~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v~-----------------~ 320 (818)
.|.++|||+|+++++..+.++ |||..|+++.+|+|+|... .|.|+|+.|. +
T Consensus 35 ~~~n~YfDTpd~~L~~~~~aL-----RiR~~~~~~~~TlK~~~~~-------gR~E~e~~l~~~~~~~~l~~~~~p~~~~ 102 (193)
T 2gfg_A 35 LQRNHYFETDDFQLKKQSSAL-----RIREKEAIFTFTLKQPHPA-------GLLETNQTLSKQEAKLALESAHFPSGEV 102 (193)
T ss_dssp EEEEEEEECTTCHHHHTTCEE-----EEEEETTEEEEEEEEECSS-------SEEEEEEEECHHHHHHHHHHCCCCCSHH
T ss_pred eeEEEeeeCCCHHHHhCCCEE-----EEEeeCCcEEEEEccCCCC-------CCceEeccCCchhhhhhcccccCCcHHH
Confidence 488999999999999999999 9999999999999987541 4899999982 5
Q ss_pred HHHHHhcCCce-----eEEEEEEEEEEEeCCEEEEEeccCCCCCCeEEEEec--CH----HHHHHHHHHcCCCCC
Q 003460 321 LGGLLDLGYSV-----VASYKRASTYVVYGNLSVSFETIDTLDETFMVLRGT--NR----KTVGAEALRMGINGP 384 (818)
Q Consensus 321 ~~~L~~LGf~~-----~~~~~K~R~~~~~~~~~i~lD~v~~lg~~fvEiE~~--~~----~~i~~~~~~Lgl~~~ 384 (818)
..+|..+|+.. +..++|.|..|.+++.+++||.....|.++.|||.. +. +.+.++++.+|+...
T Consensus 103 ~~~l~~~~~~~~~L~~~~~~~~~R~~~~~~~gev~lD~~~~~~~~~~ElE~El~~~~~~~~~~~~~l~~~gi~~~ 177 (193)
T 2gfg_A 103 MDALRDLSIPISQLKHIGTLSTSRAEISYEQGILCLDHSSYLGIEDYEIEFEGTSEEHATVTFQEILKTFSISQV 177 (193)
T ss_dssp HHHHHHTTCCGGGCEEEEEEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCccceEEEEEEEEEEEEEEeCCcEEEEeccEecCCeeEEEEEEECCcHHHHHHHHHHHHHCCCCcC
Confidence 67888899774 899999999999988899999999888656777754 43 356788889999753
No 50
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.14 E-value=7e-11 Score=122.65 Aligned_cols=173 Identities=13% Similarity=0.175 Sum_probs=101.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc---cCCCCCcccHHHHHHHHHhhh--c-----CCcccc-
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD---EGNDLDSIDFDALVQNLQDLT--E-----GKDTLI- 129 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~---~~~~~~~~d~~~l~~~L~~l~--~-----~~~i~~- 129 (818)
.+++|+|+|++||||||+++.|++.+|..++++|.+|+... .....+.-|.+.+.+.+..+. . ++.+.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 46789999999999999999999999999999999988532 111122334444444444321 0 011111
Q ss_pred ----------ccchh---------hhhccc-cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 003460 130 ----------PMFDY---------QQKNRI-GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY 189 (818)
Q Consensus 130 ----------p~~d~---------~~~~~~-~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~R 189 (818)
+.++. ...... ..+.........+|+||--+..- +.+..+++|||+|+.+.|.+|+.++
T Consensus 88 g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~-V~pda~lkifl~A~~e~Ra~Rr~~~ 166 (233)
T 3r20_A 88 GEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTV-VLPDADVKIFLTASAEERARRRNAQ 166 (233)
T ss_dssp TEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCC-CCTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeE-EcCCCCEEEEEECCHHHHHHHHHHH
Confidence 00000 000000 00000011114578888744331 2233689999999999999999875
Q ss_pred ccCCC--cCHHHHHHh----hchhhhhccCCccccCc-EEEECCCCCChhhhh
Q 003460 190 DIGDS--CSLDSLIDS----IFPLFRKHIEPDLHHAQ-IRINNRFVSSFREAI 235 (818)
Q Consensus 190 d~~~~--~s~e~~~~~----~~p~~~~~Iep~~~~AD-iII~N~~~~~~~~~~ 235 (818)
....+ .+.+++.+. -.....++..|.+.++| ++|+++ ..++++-+
T Consensus 167 l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs-~l~iee~v 218 (233)
T 3r20_A 167 NVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTS-DMDQAQVI 218 (233)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECT-TSCHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECC-CCCHHHHH
Confidence 33222 455555443 34455677889888888 777666 45555544
No 51
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.12 E-value=1.1e-10 Score=119.76 Aligned_cols=162 Identities=17% Similarity=0.155 Sum_probs=85.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-----cCCCCCcccHHHHHHHHHhh--------------h
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDLDSIDFDALVQNLQDL--------------T 122 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-----~~~~~~~~d~~~l~~~L~~l--------------~ 122 (818)
+.+|+|+|++||||||+++.|++.+|++++++|++++... .+.... +-..+......+ .
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVA--SEDALVPLASHLDVRFVSTNGNLEVIL 82 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTT--CHHHHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCcc--CHHHHHHHHHhCceeeeccCCCceEEE
Confidence 4689999999999999999999999999999999987432 121111 111122211111 0
Q ss_pred cCCccccccchhh---------hhccccc----cccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 003460 123 EGKDTLIPMFDYQ---------QKNRIGS----KVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY 189 (818)
Q Consensus 123 ~~~~i~~p~~d~~---------~~~~~~~----~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~R 189 (818)
.+..+.-+..+.. .++.+.. ..........+++||..+.+ .+...+|++||++++.+++++|+..+
T Consensus 83 ~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-~~~~~~d~~i~l~~~~e~~~~R~~~~ 161 (227)
T 1cke_A 83 EGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-VVFPDAPVKIFLDASSEERAHRRMLQ 161 (227)
T ss_dssp TTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-CCCTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-eEecCCCEEEEEeCCHHHHHHHHHHH
Confidence 0110000000000 0011100 00011224578999985443 34456899999999999999997543
Q ss_pred --ccCCCcCHHHHHHhh----chhhhhccCCcccc-CcEEEECC
Q 003460 190 --DIGDSCSLDSLIDSI----FPLFRKHIEPDLHH-AQIRINNR 226 (818)
Q Consensus 190 --d~~~~~s~e~~~~~~----~p~~~~~Iep~~~~-ADiII~N~ 226 (818)
......+.++..+.+ .+.+.+..+|.... ++++|+|+
T Consensus 162 l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~ 205 (227)
T 1cke_A 162 LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDST 205 (227)
T ss_dssp HHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETT
T ss_pred HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCC
Confidence 111112344444333 34565556666554 45888887
No 52
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.10 E-value=3.5e-11 Score=121.53 Aligned_cols=156 Identities=19% Similarity=0.215 Sum_probs=92.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----------hcc---cCCCcccccHHHHHHHHH----HH
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----------KDF---KYDDFSSLDLSLLSKNIS----DI 580 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----------~~~---~~d~p~t~D~~ll~~~L~----~L 580 (818)
.+|+|+|++||||||+++.|+. +|+.++++|+++..... ..+ .+...+..+...|.+.+. .+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~ 80 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKL 80 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHH
Confidence 4799999999999999999999 99999999999764210 001 111123555555544210 00
Q ss_pred hcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch
Q 003460 581 RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ 660 (818)
Q Consensus 581 ~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~ 660 (818)
+.-..+..|.+........ .......++|+||.+++...+...+|..||++++.++++.|...| |.+.+.
T Consensus 81 ~~l~~l~~~~v~~~~~~~~-----~~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-----~~~~~~ 150 (204)
T 2if2_A 81 RKLEEITHRALYKEIEKIT-----KNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIKR-----GMSEED 150 (204)
T ss_dssp HHHHHHHHHHHTTTHHHHH-----HHSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHHT-----CCCHHH
T ss_pred HHHHHhhCHHHHHHHHHHH-----HhccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHHc-----CCCHHH
Confidence 0000112232222111100 001111689999998776666778999999999999999999877 222221
Q ss_pred -hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 661 -NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 661 -~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
.+......+. .++...||++|+|+
T Consensus 151 ~~~~~~~~~~~-----~~~~~~ad~vId~~ 175 (204)
T 2if2_A 151 FERRWKKQMPI-----EEKVKYADYVIDNS 175 (204)
T ss_dssp HHHHHTTSCCH-----HHHGGGCSEECCCS
T ss_pred HHHHHHhCCCh-----hHHHhcCCEEEECC
Confidence 1222222222 12345689998876
No 53
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.09 E-value=4.5e-10 Score=113.34 Aligned_cols=136 Identities=19% Similarity=0.138 Sum_probs=84.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc-----ccCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV-----DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~-----~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~ 135 (818)
.+.+|+|+|++||||||+|+.|++.+|+.++++|.++... ..... +........+..+.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~---~~~~~~~~~~~~l~------------- 80 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIP---LTDDDRWPWLAAIG------------- 80 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCC---CCHHHHHHHHHHHH-------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCC---CCchhhHHHHHHHH-------------
Confidence 3568999999999999999999999999999999986421 11111 11111111111110
Q ss_pred hhccccccccccCCccEEEEEecccch---hhhhcCC---CEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhh
Q 003460 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLL---DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (818)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~---D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~ 209 (818)
... .....+|+++.++.. ..+.... +..||++++.+++++|...|+.... . .+.++.+...++
T Consensus 81 -------~~~--~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~-~-~~~~~~~~~~~~ 149 (202)
T 3t61_A 81 -------ERL--ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFM-P-SSLLQTQLETLE 149 (202)
T ss_dssp -------HHH--TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCC-C-HHHHHHHHHHCC
T ss_pred -------HHH--hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCC-C-HHHHHHHHHhcC
Confidence 000 123356778776544 2333333 6899999999999999988874322 2 334443333322
Q ss_pred hccCCccccCcEEEECC
Q 003460 210 KHIEPDLHHAQIRINNR 226 (818)
Q Consensus 210 ~~Iep~~~~ADiII~N~ 226 (818)
.+....++++|+|+
T Consensus 150 ---~~~~~~~~~~Id~~ 163 (202)
T 3t61_A 150 ---DPRGEVRTVAVDVA 163 (202)
T ss_dssp ---CCTTSTTEEEEESS
T ss_pred ---CCCCCCCeEEEeCC
Confidence 34566789999998
No 54
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.09 E-value=1.2e-10 Score=119.04 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=95.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh---------h----hcccCCCcccccHHHHHHHHHH---
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ---------V----KDFKYDDFSSLDLSLLSKNISD--- 579 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~---------~----~~~~~d~p~t~D~~ll~~~L~~--- 579 (818)
.+++|+|+|++||||||+++.|++ +|..+++.|++++... . +...++..+.++...+.+.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 478999999999999999999998 9999999999876411 0 1111222334555554433211
Q ss_pred -HhcCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCccc
Q 003460 580 -IRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFM 658 (818)
Q Consensus 580 -L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~ 658 (818)
+...+.+..|.+......... . ....++|+|+.++....+...+|..||++++.++++.|...|+ +.+.
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~--~----~~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~ 151 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQ--Q----ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRD----DVTR 151 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--H----CCSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----TCCH
T ss_pred HHHHHHHhHCHHHHHHHHHHHH--h----cCCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcC----CCCH
Confidence 111112334443322111110 0 0235788899777654466789999999999999999998875 2222
Q ss_pred ch-hhHHHhhcchhhhhccccCCcccEEEeCCC
Q 003460 659 SQ-NDIMMTVFPMFQQHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 659 ~~-~~~~~~v~p~~~~~I~p~~~~ADivI~n~~ 690 (818)
+. .+......+.+. ....||++|+|+.
T Consensus 152 ~~~~~~~~~~~~~~~-----~~~~ad~vId~~~ 179 (218)
T 1vht_A 152 EHVEQILAAQATREA-----RLAVADDVIDNNG 179 (218)
T ss_dssp HHHHHHHHHSCCHHH-----HHHHCSEEEECSS
T ss_pred HHHHHHHHhcCChHH-----HHHhCCEEEECCC
Confidence 21 122222233222 1245899999874
No 55
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.08 E-value=6.8e-11 Score=118.81 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=94.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhh-h--hc--ccCCC---cccccHHHHHHHHHH----Hh
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQ-V--KD--FKYDD---FSSLDLSLLSKNISD----IR 581 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~-~--~~--~~~d~---p~t~D~~ll~~~L~~----L~ 581 (818)
.+++.+|+|+|++||||||+++.|++. |+.++++|++++... . .. ..+.. .+++|...+.+.+.. +.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~ 83 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLK 83 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHH
Confidence 356899999999999999999999997 999999999986422 0 00 01100 235565555432200 00
Q ss_pred cCCceecccccccccccCCCcceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccch-
Q 003460 582 NGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ- 660 (818)
Q Consensus 582 ~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~- 660 (818)
....+..|.+. ..+.. .. ...+..+||+||.+++...+...+|.+||++++.+.++.|...|+. .+.+.
T Consensus 84 ~l~~~~~~~i~---~~~i~--~~-~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~----~~~~~~ 153 (203)
T 1uf9_A 84 ALEAVVHPEVR---RLLME--EL-SRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMARSG----LSREEV 153 (203)
T ss_dssp HHHHHHHHHHH---HHHHH--HH-HTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTTTC----CTTHHH
T ss_pred HHHHHhChHHH---HHHHH--Hh-hhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHcCC----CCHHHH
Confidence 00112233332 00000 00 0122579999998776655667789999999999999999988752 22211
Q ss_pred hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 661 NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 661 ~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
........+.+ +....||++|+|+
T Consensus 154 ~~~i~~~~~~~-----~~~~~ad~vId~~ 177 (203)
T 1uf9_A 154 LARERAQMPEE-----EKRKRATWVLENT 177 (203)
T ss_dssp HHHHTTSCCHH-----HHHHHCSEEECCS
T ss_pred HHHHHHCCChh-----HHHHhCCEEEECC
Confidence 12222222222 1134688998876
No 56
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.08 E-value=2.2e-10 Score=120.29 Aligned_cols=167 Identities=14% Similarity=0.095 Sum_probs=88.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc-----cCCCC-CcccHHHHHHHHHhhh-----------
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD-----EGNDL-DSIDFDALVQNLQDLT----------- 122 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~-----~~~~~-~~~d~~~l~~~L~~l~----------- 122 (818)
....+|+|+|++||||||+++.|++.||...+++|.+++... .+... +......+...+.-..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 345689999999999999999999999999999999985321 11111 2222222222111000
Q ss_pred cCCccccccchhhh---------hccc----cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHh
Q 003460 123 EGKDTLIPMFDYQQ---------KNRI----GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQY 189 (818)
Q Consensus 123 ~~~~i~~p~~d~~~---------~~~~----~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~R 189 (818)
.+..+.-....... +..+ ............+|+||..+..- +.+.+|++|||+|+.+.+.+|+...
T Consensus 105 ~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e~r~~R~~~~ 183 (252)
T 4e22_A 105 EGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI-VFPDAPVKIFLDASSQERAHRRMLQ 183 (252)
T ss_dssp TTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC-CSTTCSEEEEEECCHHHHHHHHHHH
T ss_pred CCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee-ecCCCCEEEEEECCHHHHHHHHHHH
Confidence 00000000000000 0000 00000112234578888655332 3344799999999999999998762
Q ss_pred ccC--CCcCHHHHHHh----hchhhhhccCCccccCc-EEEECCC
Q 003460 190 DIG--DSCSLDSLIDS----IFPLFRKHIEPDLHHAQ-IRINNRF 227 (818)
Q Consensus 190 d~~--~~~s~e~~~~~----~~p~~~~~Iep~~~~AD-iII~N~~ 227 (818)
... ...+.+++.+. ......+.+.|.+++|| ++|+|+.
T Consensus 184 l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~ 228 (252)
T 4e22_A 184 LQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTS 228 (252)
T ss_dssp HHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSS
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcC
Confidence 211 12345554443 33444566778888888 7888773
No 57
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.08 E-value=2.2e-10 Score=113.99 Aligned_cols=125 Identities=14% Similarity=0.102 Sum_probs=74.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (818)
+.+|+|+|++||||||+|+.|++.+|+.++++|++.+....... +..-..+.+.+. .|.....+...........
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~--~~~~~~~~~~~~---~g~~~~~~~~~~~l~~~~~ 77 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPD--SQYGELIEKYIK---EGKIVPVEITISLLKREMD 77 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTT--STTHHHHHHHHH---TTCCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccC--ChHHHHHHHHHH---CCCcCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999998654322111 111112222221 2321111100110111111
Q ss_pred ccccccCCccEEEEEecccchh---hhhc------CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 142 SKVIKGASSGVVIVDGTYALDA---RLRS------LLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~~---~l~~------~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
...........+|+||...... .+.. .+|..||+++|.++++.|...|+.
T Consensus 78 ~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 78 QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 1011112345889999865432 1211 367899999999999999988874
No 58
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.06 E-value=3.1e-10 Score=117.74 Aligned_cols=165 Identities=16% Similarity=0.210 Sum_probs=94.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc----cCCCCCcccHHHHHHHHHhhh-------------
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLT------------- 122 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~----~~~~~~~~d~~~l~~~L~~l~------------- 122 (818)
..+.+|+|+|++||||||+++.|++.+|+.++++|++++... ..+. ..-+.+.+...+..+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~f~~~~~~~~~i 92 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQL-GVEEVEALLALLDQHPISFGRSETGDQLV 92 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTC-CTTCHHHHHHHHHHSCCEEEEETTTEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCC-CcccHHHHHHHHHhccccccccCCccceE
Confidence 456789999999999999999999999999999999987422 1111 1122233333332211
Q ss_pred --cCCccccccchhhh---------hccc----cccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHH
Q 003460 123 --EGKDTLIPMFDYQQ---------KNRI----GSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKV 187 (818)
Q Consensus 123 --~~~~i~~p~~d~~~---------~~~~----~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri 187 (818)
.|+.+....-.... +..+ ............+|++|..... .+...+|++|||+++.+++++|++
T Consensus 93 ~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~-~~l~~~d~vi~L~a~~e~~~~R~~ 171 (236)
T 1q3t_A 93 FVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGT-VVLPQAELKIFLVASVDERAERRY 171 (236)
T ss_dssp EETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSS-SSGGGCSEEEEEECCHHHHHHHHH
T ss_pred eECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchh-hhccCCCEEEEEECCHHHHHHHHH
Confidence 11111000000000 0000 0000011123467789986532 234567999999999999999985
Q ss_pred HhccCC--CcCHHHHH----HhhchhhhhccCCccccCc-EEEECC
Q 003460 188 QYDIGD--SCSLDSLI----DSIFPLFRKHIEPDLHHAQ-IRINNR 226 (818)
Q Consensus 188 ~Rd~~~--~~s~e~~~----~~~~p~~~~~Iep~~~~AD-iII~N~ 226 (818)
.|.... ..+.+++. +++.+...+.+.|....+| ++|+|+
T Consensus 172 ~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~ 217 (236)
T 1q3t_A 172 KENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT 217 (236)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence 331111 12333332 2356667667777777777 899887
No 59
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.98 E-value=9.6e-10 Score=110.78 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=75.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----hcccCCCcccccHHHHHHHHHHHh-------------
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIR------------- 581 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----~~~~~d~p~t~D~~ll~~~L~~L~------------- 581 (818)
+|+|+|++||||||+++.|++.+|+.+++.|++++.... ...+++++ +.+.+.+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 78 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDE-----EGLLALLEGLGVRLLAQAEGNRVL 78 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCH-----HHHHHHHHHTTCEEECCTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCH-----HHHHHHHHhCceeeeecCCCceEE
Confidence 899999999999999999999999999999999975321 11222222 22333333211
Q ss_pred -cCCceeccccccc---------ccccCCC--cce-eeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHh
Q 003460 582 -NGRRTKVPIFDLE---------TGARSGF--KEL-EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQ 648 (818)
Q Consensus 582 -~g~~v~~P~yD~~---------~~~r~~~--~~~-~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~ 648 (818)
.|+.+..+..... .+..... ... .... ..+|+||.+++ ..+.+.+|++||++++.++++.|+..
T Consensus 79 ~~g~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~ 155 (208)
T 3ake_A 79 ADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRAR 155 (208)
T ss_dssp ETTEECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHH
T ss_pred ECCeeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHh
Confidence 1111100000000 0000000 000 0011 57899999877 34556689999999999999999988
Q ss_pred cCc
Q 003460 649 RDK 651 (818)
Q Consensus 649 Rd~ 651 (818)
|+.
T Consensus 156 r~~ 158 (208)
T 3ake_A 156 ERP 158 (208)
T ss_dssp TSS
T ss_pred hcc
Confidence 853
No 60
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.96 E-value=7.4e-10 Score=107.72 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=84.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~ 597 (818)
.+|+|+|++||||||+|+.| +.+|..++++|++++....... +...+...+.+.+... .|....... ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~ 71 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEA----KPGERLMDFAKRLREI-YGDGVVARL----CVE 71 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC-------CCHHHHHHHHHHH-HCTTHHHHH----HHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcC----CChhHHHHHHHHHHhh-CCHHHHHHH----HHH
Confidence 47899999999999999999 8899999999998875321110 1111222222222111 011110000 000
Q ss_pred cCCCcceeeecCCcEEEEEecccch--HhhhhcC---CEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhh
Q 003460 598 RSGFKELEVSEDCGVIIFEGVYALH--PEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQ 672 (818)
Q Consensus 598 r~~~~~~~~~~~~~vvIvEG~~~~~--~~l~~~~---D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~ 672 (818)
... ....+.+|++|..... ..+...+ +..||+++|.++++.|...|+....+.+.+. +.........
T Consensus 72 -----~l~-~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~--~~~r~~~~~~ 143 (179)
T 3lw7_A 72 -----ELG-TSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISE--LIRRDREELK 143 (179)
T ss_dssp -----HHC-SCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHH--HHHHHHHHHH
T ss_pred -----HHH-hcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHH--HHHHHHhhhc
Confidence 000 1234689999973222 3344443 4899999999999999998874332233222 1111100001
Q ss_pred hhccccCCcccEEEeCCC
Q 003460 673 QHIEPHLVHAHLKIRNDF 690 (818)
Q Consensus 673 ~~I~p~~~~ADivI~n~~ 690 (818)
.-+.++...||++|+|+-
T Consensus 144 ~~~~~~~~~ad~vId~~~ 161 (179)
T 3lw7_A 144 LGIGEVIAMADYIITNDS 161 (179)
T ss_dssp HTHHHHHHTCSEEEECCS
T ss_pred cChHhHHHhCCEEEECCC
Confidence 112334567999999763
No 61
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.96 E-value=1.1e-09 Score=111.83 Aligned_cols=155 Identities=14% Similarity=0.239 Sum_probs=87.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc----ccCCCCCcccHHHHHHHHHh---------------hh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV----DEGNDLDSIDFDALVQNLQD---------------LT 122 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~----~~~~~~~~~d~~~l~~~L~~---------------l~ 122 (818)
+.+|+|+|++||||||+++.|++.+|+.++++|.+++.. ...+... . +.+.... +.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~--~---i~~~~~~~~~~f~~~~~~g~~i~~ 77 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTE--D---FAKLVDQTTLDLTYKADKGQCVIL 77 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCS--C---HHHHHHTCCEEEEECTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhH--H---HHHHHHhccccccccccccceEEe
Confidence 457999999999999999999999999999999997742 1111100 0 1111000 00
Q ss_pred cCCcc-----------------ccccchhhhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHH
Q 003460 123 EGKDT-----------------LIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLIS 185 (818)
Q Consensus 123 ~~~~i-----------------~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~R 185 (818)
.|... .+|.......... ..+ .....+|++|..+ ...+.+.+|++|||+++.+++++|
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~--~~~--~~~~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e~~~~R 152 (219)
T 2h92_A 78 DNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQ--KEL--AAEKGIVMDGRDI-GTVVLPDADLKVYMIASVEERAER 152 (219)
T ss_dssp TTEECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHH--HHH--HTTCCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHH
T ss_pred CCccchhhcCcHHHHHHHHHhccCHHHHHHHHHHH--HHh--ccCCcEEEEcCCc-cceecCCCCEEEEEECCHHHHHHH
Confidence 11100 0111100000000 001 1223578888744 223445679999999999999999
Q ss_pred HHHhcc--CCCcCHHHHHHhh----chhhhhccCCccccCc-EEEECC
Q 003460 186 KVQYDI--GDSCSLDSLIDSI----FPLFRKHIEPDLHHAQ-IRINNR 226 (818)
Q Consensus 186 ri~Rd~--~~~~s~e~~~~~~----~p~~~~~Iep~~~~AD-iII~N~ 226 (818)
++.+.. ....+.+++.+.+ .+...+.+.|....|| ++|+|+
T Consensus 153 ~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~ 200 (219)
T 2h92_A 153 RYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTT 200 (219)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECT
T ss_pred HHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECC
Confidence 865311 1112444444332 2444445556666677 999987
No 62
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.95 E-value=1.1e-09 Score=112.08 Aligned_cols=166 Identities=14% Similarity=0.118 Sum_probs=82.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----hcccCCCcccccHHHHHHHHHHH------------
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDI------------ 580 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----~~~~~d~p~t~D~~ll~~~L~~L------------ 580 (818)
+.+|+|+|++||||||+++.|+..+|+.+++.|++++.... ...+.++ -..+.+....+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVAS-----EDALVPLASHLDVRFVSTNGNLE 79 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTC-----HHHHHHHHHTCCEEEEEETTEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccC-----HHHHHHHHHhCceeeeccCCCce
Confidence 46899999999999999999999999999999999985321 1111111 01111111100
Q ss_pred --hcCCceeccccccc---------ccccCCC--cc-eeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHH
Q 003460 581 --RNGRRTKVPIFDLE---------TGARSGF--KE-LEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646 (818)
Q Consensus 581 --~~g~~v~~P~yD~~---------~~~r~~~--~~-~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr 646 (818)
..|..+.-+..+.. .+..... .. .........+++||..... .+...+|.+||++++.++++.|+
T Consensus 80 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~-~~~~~~d~~i~l~~~~e~~~~R~ 158 (227)
T 1cke_A 80 VILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGT-VVFPDAPVKIFLDASSEERAHRR 158 (227)
T ss_dssp EEETTEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCC-CCCTTCSEEEEEECCHHHHHHHH
T ss_pred EEECCeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccc-eEecCCCEEEEEeCCHHHHHHHH
Confidence 00110000000000 0000000 00 0001224678999985443 33456899999999999999997
Q ss_pred HhcCccccCcc--cch--hhHHHhhcchhhhhccccCCc-ccEEEeCC
Q 003460 647 VQRDKSRMGCF--MSQ--NDIMMTVFPMFQQHIEPHLVH-AHLKIRND 689 (818)
Q Consensus 647 i~Rd~~~rg~~--~~~--~~~~~~v~p~~~~~I~p~~~~-ADivI~n~ 689 (818)
..+ ...+|.. .+. .++...+.+.+..+++|.... ++++|+++
T Consensus 159 ~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~ 205 (227)
T 1cke_A 159 MLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDST 205 (227)
T ss_dssp HHH-HHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETT
T ss_pred HHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCC
Confidence 643 2234542 221 122222233455555665443 45888876
No 63
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.93 E-value=2e-09 Score=106.77 Aligned_cols=120 Identities=13% Similarity=0.086 Sum_probs=72.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (818)
.+.+|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+. .+... + +.......
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~--~--~~~~~~~l 74 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSK---DGEMIATMIK---NGEIV--P--SIVTVKLL 74 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCT---THHHHHHHHH---TTCCC--C--HHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCH---HHHHHHHHHH---CCCCC--C--HHHHHHHH
Confidence 3578999999999999999999999999999999976533211111 1122222221 12110 0 00001111
Q ss_pred cccccccCCccEEEEEecccch---hhh----hc--CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 141 GSKVIKGASSGVVIVDGTYALD---ARL----RS--LLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~---~~l----~~--~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
.. .+.......+|+||..... ..+ .. .+|++|||++|.+++++|...|+.
T Consensus 75 ~~-~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 75 KN-AIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp HH-HHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred HH-HHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence 00 0111134578999854322 112 22 568999999999999999988864
No 64
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.92 E-value=1.8e-09 Score=105.46 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=34.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (818)
..+.+|+|+|++||||||+|+.|++.||++++++|.+...
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~ 44 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISE 44 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 4577899999999999999999999999999999998664
No 65
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.92 E-value=1.6e-09 Score=108.42 Aligned_cols=121 Identities=14% Similarity=0.027 Sum_probs=73.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (818)
+.+|+|+|++||||||+|+.|++.+|+.++++|++++.....+.+ ....+.+.+. .|...............+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~~~~~~~~~~~~~i~ 85 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESE---RSKLIRDIME---RGDLVPSGIVLELLKEAMV 85 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCH---HHHHHHHHHH---TTCCCCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCH---HHHHHHHHHH---cCCcCCHHHHHHHHHHHHh
Confidence 568999999999999999999999999999999986633211110 0011112221 2222110000000111110
Q ss_pred ccccccCCccEEEEEecccch---hhhhc---CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 142 SKVIKGASSGVVIVDGTYALD---ARLRS---LLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l~~---~~l~~---~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
. .......+|+||..... ..+.. .+|++|||++|.+++.+|...|+.
T Consensus 86 ~---~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 86 A---SLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp H---HTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred c---ccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 0 01234579999875432 12222 579999999999999999988864
No 66
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.91 E-value=3.5e-09 Score=103.13 Aligned_cols=147 Identities=14% Similarity=0.170 Sum_probs=81.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (818)
|.+|+|+|++||||||+|+.|++.+|+.+++.|.+..... ....+.+....+..+..+....+... ..
T Consensus 1 M~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~--------~~~~~~~~~~~l~~~~~vi~dr~~~~---~~- 68 (173)
T 3kb2_A 1 MTLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS--------GNEKLFEHFNKLADEDNVIIDRFVYS---NL- 68 (173)
T ss_dssp -CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT--------CHHHHHHHHHHHTTCCSEEEESCHHH---HH-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh--------HHHHHHHHHHHHHhCCCeEEeeeecc---hH-
Confidence 3579999999999999999999999999999998865332 12223233334444433322111110 00
Q ss_pred ccccccC--CccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhccCCccccC
Q 003460 142 SKVIKGA--SSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHIEPDLHHA 219 (818)
Q Consensus 142 ~~~~~~~--~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~Iep~~~~A 219 (818)
..... .... +...............|..||++++.++..+|...|.. .... .+..+.+...|+.....+ ..+
T Consensus 69 --v~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r-~~~~-~~~~~~~~~~~~~~~~~~-~~~ 142 (173)
T 3kb2_A 69 --VYAKKFKDYSI-LTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGD-EYIE-GKDIDSILELYREVMSNA-GLH 142 (173)
T ss_dssp --HHTTTBTTCCC-CCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSC-SCCC-HHHHHHHHHHHHHHHHTC-SSC
T ss_pred --HHHHHHHHhhH-hhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC-cchh-hhHHHHHHHHHHHHHhhc-CCC
Confidence 00000 0000 00000000011112468999999999999999888732 1122 234444545555433333 368
Q ss_pred cEEEECC
Q 003460 220 QIRINNR 226 (818)
Q Consensus 220 DiII~N~ 226 (818)
+++|+++
T Consensus 143 ~~~id~~ 149 (173)
T 3kb2_A 143 TYSWDTG 149 (173)
T ss_dssp EEEEETT
T ss_pred EEEEECC
Confidence 8999887
No 67
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.90 E-value=3e-10 Score=112.67 Aligned_cols=144 Identities=13% Similarity=0.112 Sum_probs=77.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccccc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~ 142 (818)
.+|+|+|++||||||+|+.|++.+|+.++++|++++...... ...+ +.. .|.. .+.........
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~------~~~~---~~~--~g~~----~~~~~~~~~~~- 66 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRS------IADI---FAT--DGEQ----EFRRIEEDVVR- 66 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSC------HHHH---HHH--HCHH----HHHHHHHHHHH-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCC------HHHH---HHH--hChH----HHHHHHHHHHH-
Confidence 369999999999999999999999999999999866432111 0000 000 0000 00000000000
Q ss_pred cccccCCccEEEEEeccc-chhhhhcC--CCEEEEEEcCHHHHHHHHHHhccCC---CcCHHHHHHhhchhhhhccCCcc
Q 003460 143 KVIKGASSGVVIVDGTYA-LDARLRSL--LDIRVAVVGGVHFSLISKVQYDIGD---SCSLDSLIDSIFPLFRKHIEPDL 216 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l-~~~~l~~~--~D~~I~Vda~~e~~l~Rri~Rd~~~---~~s~e~~~~~~~p~~~~~Iep~~ 216 (818)
.... ....|+..|... +.+..++. ++..|||++|.+++++|...|+... ..+..+.++.++.... ..+.
T Consensus 67 ~~~~--~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~---~~~~ 141 (184)
T 2iyv_A 67 AALA--DHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRA---PLYR 141 (184)
T ss_dssp HHHH--HCCSEEECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHH---HHHH
T ss_pred HHHh--cCCeEEecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHH---HHHh
Confidence 0001 112344545433 22222211 6899999999999999887765321 1233333433321111 1123
Q ss_pred ccCcEEEECCC
Q 003460 217 HHAQIRINNRF 227 (818)
Q Consensus 217 ~~ADiII~N~~ 227 (818)
..+|++|+|+.
T Consensus 142 ~~~~~~Idt~~ 152 (184)
T 2iyv_A 142 RVATMRVDTNR 152 (184)
T ss_dssp HHCSEEEECSS
T ss_pred ccCCEEEECCC
Confidence 56899999883
No 68
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.89 E-value=2.4e-09 Score=111.09 Aligned_cols=169 Identities=15% Similarity=0.199 Sum_probs=93.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh--cccCCCcccccHHHHHHHHHHHh-------cCCce
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYDDFSSLDLSLLSKNISDIR-------NGRRT 586 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~--~~~~d~p~t~D~~ll~~~L~~L~-------~g~~v 586 (818)
.|++|+|.||+||||||+++.|++.+|..+++.|++|+..... ..+.+ .-|.+.+.+.+..+. .+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~---~~d~~~~~~~~~~~~~~~~~~~~~~~v 84 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGAD---LTDPAAIEKAAADAEIGVGSDPDVDAA 84 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCC---TTCHHHHHHHHHTCCEEECCCTTSCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCC---chhhHHHHHHHHhCCEEEeecCCCcEE
Confidence 5789999999999999999999999999999999999863311 11111 123333444333221 00111
Q ss_pred ecccccccccccCCC-------------------c-ceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHH
Q 003460 587 KVPIFDLETGARSGF-------------------K-ELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISR 646 (818)
Q Consensus 587 ~~P~yD~~~~~r~~~-------------------~-~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rr 646 (818)
.+.--|-...-|.+. . .........-+|+||-..+.--+.+ .+++||++++.+.|..|+
T Consensus 85 ~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pd-a~lkifl~A~~e~Ra~Rr 163 (233)
T 3r20_A 85 FLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPD-ADVKIFLTASAEERARRR 163 (233)
T ss_dssp EETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTT-CSEEEEEECCHHHHHHHH
T ss_pred EECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCC-CCEEEEEECCHHHHHHHH
Confidence 111101100001000 0 0000111156888998665422222 579999999999999999
Q ss_pred HhcCccccCcccc--h--hhHHHhhcchhhhhccccCCccc-EEEeCC
Q 003460 647 VQRDKSRMGCFMS--Q--NDIMMTVFPMFQQHIEPHLVHAH-LKIRND 689 (818)
Q Consensus 647 i~Rd~~~rg~~~~--~--~~~~~~v~p~~~~~I~p~~~~AD-ivI~n~ 689 (818)
..+-. ..|.... . .+....-......++.|.+..+| ++|+++
T Consensus 164 ~~~l~-~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs 210 (233)
T 3r20_A 164 NAQNV-ANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTS 210 (233)
T ss_dssp HHHHH-HTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECT
T ss_pred HHHHH-hccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECC
Confidence 86432 2233322 2 12222222233456778776666 787765
No 69
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.88 E-value=1.2e-08 Score=100.11 Aligned_cols=142 Identities=13% Similarity=0.104 Sum_probs=80.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc--c--cCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV--D--EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~--~--~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~ 135 (818)
..+.+|+|+|++||||||+++.|+..+|..+++.|++.... . ..+. .+........+..+ .
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~-----------~-- 70 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGE--PLNDDDRKPWLQAL-----------N-- 70 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTC--CCCHHHHHHHHHHH-----------H--
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCc--CCCccccccHHHHH-----------H--
Confidence 34578999999999999999999999999999999975320 0 0000 01101111111100 0
Q ss_pred hhccccccccccCCccEEEEEecccch---hhhhcCC-C-EEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhh
Q 003460 136 QKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLL-D-IRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (818)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~-D-~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~ 210 (818)
... ..... ....+|++..+... ..+.... | ..|||++|.+++++|...|+... .. ...++.+...++
T Consensus 71 --~~~-~~~~~--~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~-~~-~~~~~~~~~~~~- 142 (175)
T 1knq_A 71 --DAA-FAMQR--TNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF-FK-TQMLVTQFETLQ- 142 (175)
T ss_dssp --HHH-HHHHH--HCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCC-CC-HHHHHHHHHHCC-
T ss_pred --HHH-HHHHh--cCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCC-Cc-hHHHHHHHHhhh-
Confidence 000 00000 12246676544433 2344433 6 78999999999999988876322 12 233333322221
Q ss_pred ccCC-ccccCcEEEECC
Q 003460 211 HIEP-DLHHAQIRINNR 226 (818)
Q Consensus 211 ~Iep-~~~~ADiII~N~ 226 (818)
.+ +...||++|+|+
T Consensus 143 --~~~~~~~~~~~Id~~ 157 (175)
T 1knq_A 143 --EPGADETDVLVVDID 157 (175)
T ss_dssp --CCCTTCTTEEEEECS
T ss_pred --CcccCCCCeEEEeCC
Confidence 23 456789999988
No 70
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.88 E-value=8.3e-09 Score=103.98 Aligned_cols=141 Identities=14% Similarity=0.128 Sum_probs=82.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~ 595 (818)
.+.+|+|+|++||||||+|+.|++.+|..+++.|+++..........+.+ +........+..+.+. +
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~--~~~~~~~~~~~~l~~~--~--------- 83 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIP--LTDDDRWPWLAAIGER--L--------- 83 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCC--CCHHHHHHHHHHHHHH--H---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCC--CCchhhHHHHHHHHHH--H---------
Confidence 46789999999999999999999999999999999986522111111110 1111111122221110 0
Q ss_pred cccCCCcceeeecCCcEEEEEecccch---HhhhhcC---CEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcc
Q 003460 596 GARSGFKELEVSEDCGVIIFEGVYALH---PEIRKSL---DLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFP 669 (818)
Q Consensus 596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~~~---D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p 669 (818)
.....+|+++..... ..+.... +..||++++.++++.|...|+..... . .... .
T Consensus 84 ------------~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~---~--~~~~---~ 143 (202)
T 3t61_A 84 ------------ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMP---S--SLLQ---T 143 (202)
T ss_dssp ------------TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCC---H--HHHH---H
T ss_pred ------------hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCC---H--HHHH---H
Confidence 112345666665432 2344433 58999999999999999887632111 1 1111 1
Q ss_pred hhhhhccccCCcccEEEeCC
Q 003460 670 MFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 670 ~~~~~I~p~~~~ADivI~n~ 689 (818)
.+..+-.+....++++|+++
T Consensus 144 ~~~~~~~~~~~~~~~~Id~~ 163 (202)
T 3t61_A 144 QLETLEDPRGEVRTVAVDVA 163 (202)
T ss_dssp HHHHCCCCTTSTTEEEEESS
T ss_pred HHHhcCCCCCCCCeEEEeCC
Confidence 22233234556689999987
No 71
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=3.5e-09 Score=106.74 Aligned_cols=149 Identities=19% Similarity=0.126 Sum_probs=78.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (818)
.++.+|+|+|++||||||+++.|++.+|..++++|++........ ...+...- +. +.+.... ..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~------i~~~~~~~-----~~----~~~~~~e-~~ 86 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKT------VGELFTER-----GE----AGFRELE-RN 86 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSC------HHHHHHHH-----HH----HHHHHHH-HH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCc------HHHHHHhc-----Ch----HHHHHHH-HH
Confidence 345689999999999999999999999999999999754322111 00000000 00 0000000 00
Q ss_pred ccccccccCCccEEEEEecccch-hh---hhcCCCEEEEEEcCHHHHHHHHH-HhccC---CCcCHHHHHHhhchhhhhc
Q 003460 140 IGSKVIKGASSGVVIVDGTYALD-AR---LRSLLDIRVAVVGGVHFSLISKV-QYDIG---DSCSLDSLIDSIFPLFRKH 211 (818)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~-~~---l~~~~D~~I~Vda~~e~~l~Rri-~Rd~~---~~~s~e~~~~~~~p~~~~~ 211 (818)
..... .....+||..|..... .. .....+.+||+++|.++..+|.. .|... ...+.+++.+.+...+...
T Consensus 87 ~l~~l--~~~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r 164 (199)
T 3vaa_A 87 MLHEV--AEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQALEKR 164 (199)
T ss_dssp HHHHH--TTCSSEEEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHH--hhcCCcEEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHHHHH
Confidence 00000 1123355554543332 21 11225899999999999988876 33211 1234433333332333322
Q ss_pred cCCccccCcEEEECCC
Q 003460 212 IEPDLHHAQIRINNRF 227 (818)
Q Consensus 212 Iep~~~~ADiII~N~~ 227 (818)
...+.. ||++|+++.
T Consensus 165 ~~~y~~-ad~~Idt~~ 179 (199)
T 3vaa_A 165 APFYTQ-AQYIFNADE 179 (199)
T ss_dssp HHHHTT-SSEEEECCC
T ss_pred HHHHhh-CCEEEECCC
Confidence 111223 999999884
No 72
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.87 E-value=3.8e-09 Score=104.97 Aligned_cols=126 Identities=16% Similarity=0.176 Sum_probs=73.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~ 595 (818)
.|.+|+|.|++||||||+|+.|++.+|..++++|++.+..... +++.--..+.+.+ ..|............
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~------~~~~~~~~~~~~~---~~g~~~~~~~~~~~l 72 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKN------PDSQYGELIEKYI---KEGKIVPVEITISLL 72 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHC------TTSTTHHHHHHHH---HTTCCCCHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhc------cCChHHHHHHHHH---HCCCcCCHHHHHHHH
Confidence 3788999999999999999999999999999999997642110 0010011112211 123221111000000
Q ss_pred cccCCCcceeeecCCcEEEEEecccchH---hhhh------cCCEEEEEEcChhHHHHHHHhcCc
Q 003460 596 GARSGFKELEVSEDCGVIIFEGVYALHP---EIRK------SLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 596 ~~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~~------~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
..... ...........+|+||...... .+.. ..|..||+++|.++++.|...|+.
T Consensus 73 ~~~~~-~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 136 (196)
T 1tev_A 73 KREMD-QTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGK 136 (196)
T ss_dssp HHHHH-HHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccc
Confidence 00000 0000112346889999876432 2222 367899999999999999988863
No 73
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.87 E-value=6.5e-09 Score=107.70 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=94.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhh----hcccCCCcccccHHHHHHHHHHHhc-------
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQV----KDFKYDDFSSLDLSLLSKNISDIRN------- 582 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~----~~~~~d~p~t~D~~ll~~~L~~L~~------- 582 (818)
...+.+|+|+|++||||||+++.|+..+|+.+++.|++++.... ....+++ .+.+.+.+..+..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~f~~~~~ 87 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEE-----VEALLALLDQHPISFGRSET 87 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTC-----HHHHHHHHHHSCCEEEEETT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCccc-----HHHHHHHHHhccccccccCC
Confidence 34678999999999999999999999999999999999975221 1112222 2223333322110
Q ss_pred -CCceeccc--ccccccc--------------cC--CC-cceeeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHH
Q 003460 583 -GRRTKVPI--FDLETGA--------------RS--GF-KELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSH 642 (818)
Q Consensus 583 -g~~v~~P~--yD~~~~~--------------r~--~~-~~~~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~r 642 (818)
|..+..-- ++..... .. .. ...........+|+||.....+ +...+|++||++++.+++
T Consensus 88 ~~~~i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~-~l~~~d~vi~L~a~~e~~ 166 (236)
T 1q3t_A 88 GDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTV-VLPQAELKIFLVASVDER 166 (236)
T ss_dssp TEEEEEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSS-SGGGCSEEEEEECCHHHH
T ss_pred ccceEeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhh-hccCCCEEEEEECCHHHH
Confidence 01110000 0000000 00 00 0000112335678899876532 334579999999999999
Q ss_pred HHHHHhcCccccCc--ccch--hhHHHhhcchhhhhccccCCccc-EEEeCC
Q 003460 643 LISRVQRDKSRMGC--FMSQ--NDIMMTVFPMFQQHIEPHLVHAH-LKIRND 689 (818)
Q Consensus 643 l~Rri~Rd~~~rg~--~~~~--~~~~~~v~p~~~~~I~p~~~~AD-ivI~n~ 689 (818)
+.|++.|. ..||. +.+. ..+.....+....++.|....+| ++|+|+
T Consensus 167 ~~R~~~~~-~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~ 217 (236)
T 1q3t_A 167 AERRYKEN-IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTT 217 (236)
T ss_dssp HHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECS
T ss_pred HHHHHHHH-HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCC
Confidence 99986553 23343 2222 12322244555556677666666 888876
No 74
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.85 E-value=2.7e-09 Score=107.52 Aligned_cols=123 Identities=15% Similarity=0.068 Sum_probs=71.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccccc-CCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE-GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~-~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (818)
.++.+|+|+|++||||||+|+.|++.+|..++++|++++.... .+.. + -+.+.+.+. .|..............
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~--~-~~~i~~~~~---~g~~~~~~~~~~~l~~ 86 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQ--Y-GELIKNCIK---EGQIVPQEITLALLRN 86 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCS--C-HHHHHHHHH---TTCCCCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCH--H-HHHHHHHHH---cCCcCCHHHHHHHHHH
Confidence 4578999999999999999999999999999999998664321 1111 1 112222221 2221100000000000
Q ss_pred cccccccccCCccEEEEEecccch------hhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALD------ARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~------~~l~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.+. .... .....+|++|..... .......|++|||++|.+++++|...|+
T Consensus 87 ~i~-~~l~-~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 87 AIS-DNVK-ANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp HHH-HHHH-TTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHH-hhhc-cCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence 010 0111 112467788863211 1122337999999999999999998886
No 75
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.84 E-value=2.2e-09 Score=104.92 Aligned_cols=145 Identities=11% Similarity=0.084 Sum_probs=77.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIG 141 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~ 141 (818)
+.+|+|+|++||||||+|+.|++.+|+.++++|++++..... + ...+.... +.. .+..... ...
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g~--~----~~~~~~~~-----~~~----~~~~~~~-~~~ 65 (173)
T 1e6c_A 2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGM--T----VADVVAAE-----GWP----GFRRRES-EAL 65 (173)
T ss_dssp CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCS--C----HHHHHHHH-----HHH----HHHHHHH-HHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhCC--C----HHHHHHHc-----CHH----HHHHHHH-HHH
Confidence 357999999999999999999999999999999986543111 0 11110000 000 0000000 000
Q ss_pred ccccccCCccEEEEEeccc-chhhhh---cCCCEEEEEEcCHHHHHHHHH--Hhcc-CCCcCHHHHHHhhchhhhhccCC
Q 003460 142 SKVIKGASSGVVIVDGTYA-LDARLR---SLLDIRVAVVGGVHFSLISKV--QYDI-GDSCSLDSLIDSIFPLFRKHIEP 214 (818)
Q Consensus 142 ~~~~~~~~~~vVIvEG~~l-~~~~l~---~~~D~~I~Vda~~e~~l~Rri--~Rd~-~~~~s~e~~~~~~~p~~~~~Iep 214 (818)
.. +. ...+||..|... +.+... ...|..|||++|.+++++|.. .|.. ......+...+.+...+......
T Consensus 66 ~~-l~--~~~~vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~ 142 (173)
T 1e6c_A 66 QA-VA--TPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL 142 (173)
T ss_dssp HH-HC--CSSEEEECCTTGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred HH-hh--cCCeEEECCCcEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHH
Confidence 00 11 234566655322 222111 125899999999999999887 6621 11122222222222222221111
Q ss_pred ccccCcEEEECC
Q 003460 215 DLHHAQIRINNR 226 (818)
Q Consensus 215 ~~~~ADiII~N~ 226 (818)
+.. +|++|+|+
T Consensus 143 ~~~-~~~~Id~~ 153 (173)
T 1e6c_A 143 YQD-VAHYVVDA 153 (173)
T ss_dssp HHH-HCSEEEET
T ss_pred HHh-CcEEEECC
Confidence 223 89999987
No 76
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.83 E-value=1.6e-09 Score=107.46 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=34.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (818)
+..|.|+|++||||||+|+.|++.+|+.++++|++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 45789999999999999999999999999999998653
No 77
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.83 E-value=1.3e-08 Score=106.24 Aligned_cols=129 Identities=14% Similarity=-0.083 Sum_probs=77.7
Q ss_pred HHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCcccccc
Q 003460 52 IQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPM 131 (818)
Q Consensus 52 i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~ 131 (818)
.......+.++++|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ ....+.+.+ ..+..+....
T Consensus 19 ~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~---~g~~i~~~~---~~g~~~~~~~ 92 (243)
T 3tlx_A 19 KRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTE---LGLKIKNII---NEGKLVDDQM 92 (243)
T ss_dssp HHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSH---HHHHHHHHH---HTTCCCCHHH
T ss_pred HHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccch---HHHHHHHHH---hcCCCCcHHH
Confidence 3333445567899999999999999999999999999999999987653322111 111112211 2222111111
Q ss_pred chhhhhccccccccccCCccEEEEEecccch---hhhh-------cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 132 FDYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 132 ~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~-------~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
......... ........+|+||..... ..+. ...|.+|++++|.++.++|...|.
T Consensus 93 ~~~~~~~~l----~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 93 VLSLVDEKL----KTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp HHHHHHHHT----TSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHHHHHH----hcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 111111111 111223468899943222 1111 347999999999999999999886
No 78
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.82 E-value=6.6e-09 Score=109.06 Aligned_cols=172 Identities=13% Similarity=0.140 Sum_probs=83.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh--cccCCCcccccHHHHHHHHHHHh--cCC--ceecc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK--DFKYDDFSSLDLSLLSKNISDIR--NGR--RTKVP 589 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~--~~~~d~p~t~D~~ll~~~L~~L~--~g~--~v~~P 589 (818)
...+|+|+||+||||||+++.|++.||...++.|.+|+..... ..+.+..+......+.+.+.-.. .+. .+.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 105 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILE 105 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEEC
Confidence 4568999999999999999999999999999999998542110 00111111111222211110000 000 00000
Q ss_pred cccccccccCC-----------C-------cce-eeecCCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460 590 IFDLETGARSG-----------F-------KEL-EVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 590 ~yD~~~~~r~~-----------~-------~~~-~~~~~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
..+....-+.. . ..+ .......-+|+||-....- +.+..|++||++++.+.|..|+..+.
T Consensus 106 ~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e~r~~R~~~~l 184 (252)
T 4e22_A 106 GEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI-VFPDAPVKIFLDASSQERAHRRMLQL 184 (252)
T ss_dssp TEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC-CSTTCSEEEEEECCHHHHHHHHHHHH
T ss_pred CeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee-ecCCCCEEEEEECCHHHHHHHHHHHH
Confidence 00000000000 0 000 0011234578899766532 22336899999999999999987632
Q ss_pred ccccCcccch----hhHHHhhcchhhhhccccCCccc-EEEeCC
Q 003460 651 KSRMGCFMSQ----NDIMMTVFPMFQQHIEPHLVHAH-LKIRND 689 (818)
Q Consensus 651 ~~~rg~~~~~----~~~~~~v~p~~~~~I~p~~~~AD-ivI~n~ 689 (818)
..+|..... .++...........+.|....|| ++|+++
T Consensus 185 -~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts 227 (252)
T 4e22_A 185 -QERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDST 227 (252)
T ss_dssp -HHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECS
T ss_pred -HhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECc
Confidence 122222221 11112222233455678877888 888876
No 79
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.81 E-value=1.3e-08 Score=102.65 Aligned_cols=141 Identities=18% Similarity=0.076 Sum_probs=78.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccc-----ccCCCCCcccHHHHHHHHHhhhcCCccccccchhh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGV-----DEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQ 135 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~-----~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~ 135 (818)
...+|+|+|++||||||+++.|+..+|..+++.|++.... .....+. .......+..+ ...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~-----------~~~ 93 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLT---DEDRWPWLRSL-----------AEW 93 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCC---HHHHHHHHHHH-----------HHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCC---CcccccHHHHH-----------HHH
Confidence 4578999999999999999999999999999999975321 0011111 11111111100 000
Q ss_pred hhccccccccccCCccEEEEEecccchh---hhhcCC--CEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhh
Q 003460 136 QKNRIGSKVIKGASSGVVIVDGTYALDA---RLRSLL--DIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRK 210 (818)
Q Consensus 136 ~~~~~~~~~~~~~~~~vVIvEG~~l~~~---~l~~~~--D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~ 210 (818)
. ..... . ...+|+++..+... .+.... ...||++++.+++++|...|..... . .+.++. .+..
T Consensus 94 ----~-~~~~~-~-g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~~-~-~~~l~~---~~~~ 161 (200)
T 4eun_A 94 ----M-DARAD-A-GVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHFM-P-ASLLQS---QLAT 161 (200)
T ss_dssp ----H-HHHHH-T-TCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCSS-C-GGGHHH---HHHH
T ss_pred ----H-HHHHh-c-CCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCCC-C-HHHHHH---HHHH
Confidence 0 00001 1 12355565544332 222221 3679999999999888877764322 1 122222 2333
Q ss_pred ccCCccccCcEEEECCC
Q 003460 211 HIEPDLHHAQIRINNRF 227 (818)
Q Consensus 211 ~Iep~~~~ADiII~N~~ 227 (818)
+..++...|+++|+|+.
T Consensus 162 ~~~~~~~~~~~~Id~~~ 178 (200)
T 4eun_A 162 LEALEPDESGIVLDLRQ 178 (200)
T ss_dssp CCCCCTTSCEEEEETTS
T ss_pred hCCCCCCCCeEEEECCC
Confidence 33345556999999973
No 80
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.80 E-value=1.1e-09 Score=106.76 Aligned_cols=108 Identities=13% Similarity=0.091 Sum_probs=63.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (818)
+|+|+|++||||||+|+.|++.+|+.++++|++....... ....+. .. .+.. .++... .....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~------~~~~~~---~~--~~~~----~~~~~~-~~~l~- 64 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGL------SIPQIF---EK--KGEA----YFRKLE-FEVLK- 64 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTS------CHHHHH---HH--SCHH----HHHHHH-HHHHH-
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCC------CHHHHH---HH--hChH----HHHHHH-HHHHH-
Confidence 6999999999999999999999999999999986543211 000000 00 0000 000000 00000
Q ss_pred ccccCCccEEEEEec--ccchh---hhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 144 VIKGASSGVVIVDGT--YALDA---RLRSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 144 ~~~~~~~~vVIvEG~--~l~~~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.+. ....+||.+|. .+... .+. .+|..|||++|.+.+++|...|.
T Consensus 65 ~l~-~~~~~Vi~~g~~~~~~~~~~~~l~-~~~~~i~l~~~~e~~~~R~~~r~ 114 (168)
T 2pt5_A 65 DLS-EKENVVISTGGGLGANEEALNFMK-SRGTTVFIDIPFEVFLERCKDSK 114 (168)
T ss_dssp HHT-TSSSEEEECCHHHHTCHHHHHHHH-TTSEEEEEECCHHHHHHHCBCTT
T ss_pred HHh-ccCCeEEECCCCEeCCHHHHHHHH-cCCEEEEEECCHHHHHHHHhCCC
Confidence 011 12346666443 33322 222 27999999999999998877653
No 81
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.78 E-value=1.2e-08 Score=102.70 Aligned_cols=155 Identities=18% Similarity=0.142 Sum_probs=82.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (818)
..+++|+|+|++||||||+|+.|++.+|..++++|++.+.....+.+ ....+.+.+. .+..............+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~---~g~~i~~~~~---~g~~~~~~~~~~~~~~~ 91 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTK---LGVEAKRYLD---AGDLVPSDLTNELVDDR 91 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCH---HHHHHHHHHH---HTCCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCCh---HHHHHHHHHH---cCCcccHHHHHHHHHHH
Confidence 45678999999999999999999999999999999976532111110 0011111111 12111000000001111
Q ss_pred ccccccccCCccEEEEEecccch-------hhhh---cCCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhchhhh
Q 003460 140 IGSKVIKGASSGVVIVDGTYALD-------ARLR---SLLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (818)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~-------~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~ 209 (818)
... ......+|++|...-. ..+. ..+|..||+++|.+++++|...|.... .+.+.+.+++ ..|.
T Consensus 92 ~~~----~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~~-~~~e~~~~r~-~~~~ 165 (201)
T 2cdn_A 92 LNN----PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRAD-DTDDVILNRM-KVYR 165 (201)
T ss_dssp TTS----GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCTT-CSHHHHHHHH-HHHH
T ss_pred Hhc----ccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCCC-CCHHHHHHHH-HHHH
Confidence 100 0112347889853211 1122 247899999999999999988885321 2333333222 1111
Q ss_pred hccCC---ccccCcEEEECC
Q 003460 210 KHIEP---DLHHAQIRINNR 226 (818)
Q Consensus 210 ~~Iep---~~~~ADiII~N~ 226 (818)
....| ....++++|+|+
T Consensus 166 ~~~~~~~~~~~~~~~~Id~~ 185 (201)
T 2cdn_A 166 DETAPLLEYYRDQLKTVDAV 185 (201)
T ss_dssp HHTTTHHHHTTTTEEEEECC
T ss_pred HhhHHHHHHhcCcEEEEeCC
Confidence 11111 014578888886
No 82
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.76 E-value=1.8e-08 Score=99.81 Aligned_cols=121 Identities=15% Similarity=0.158 Sum_probs=70.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~ 594 (818)
..+.+|+|+|++||||||+|+.|++.+|..++++|++.+..... +.+ ....+.+.+ ..|.... +..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~----~~~---~~~~i~~~~---~~g~~~~----~~~ 69 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQS----GSK---DGEMIATMI---KNGEIVP----SIV 69 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT----TCT---THHHHHHHH---HTTCCCC----HHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhc----CCH---HHHHHHHHH---HCCCCCC----HHH
Confidence 35679999999999999999999999999999999987642110 000 011111111 1121100 000
Q ss_pred ccccCCCcceeeecCCcEEEEEecccch---Hhh----hh--cCCEEEEEEcChhHHHHHHHhcCc
Q 003460 595 TGARSGFKELEVSEDCGVIIFEGVYALH---PEI----RK--SLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l----~~--~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
...... .... ......+|++|..... ..+ .. ..|..||+++|.++++.|...|+.
T Consensus 70 ~~~~l~-~~i~-~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 70 TVKLLK-NAID-ANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp HHHHHH-HHHH-TSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHH-hcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence 000000 0000 0024578899854332 112 22 468899999999999999988853
No 83
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.76 E-value=5.9e-09 Score=106.05 Aligned_cols=116 Identities=14% Similarity=-0.001 Sum_probs=68.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (818)
.|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ -...+.+.+. .+..+.............
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~---~~~~~~~~~~---~g~~~~~~~~~~~~~~~l--- 72 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTE---LGLKAKSFMD---QGNLVPDEVTIGIVHERL--- 72 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCH---HHHHHHHHHH---HTCCCCHHHHHHHHHHHH---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCH---HHHHHHHHHH---CCCCCCHHHHHHHHHHHH---
Confidence 5899999999999999999999999999999987643322211 0111111111 121111001111111111
Q ss_pred ccccCCccEEEEEecccch---hhhh-------cCCCEEEEEEcCHHHHHHHHHHh
Q 003460 144 VIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQY 189 (818)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~---~~l~-------~~~D~~I~Vda~~e~~l~Rri~R 189 (818)
........+|++|..... ..+. ..+|.+||+++|.+++++|...|
T Consensus 73 -~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 73 -SKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp -TSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred -hcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 111113458889853322 1121 23799999999999999999988
No 84
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.75 E-value=1.5e-08 Score=98.67 Aligned_cols=145 Identities=9% Similarity=0.082 Sum_probs=83.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGA 597 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~ 597 (818)
.+|+|+|++||||||+++.|++.++..+++.|.|..... ....+.+....+..|..+..-++-.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~------------~~~~~~~~~~~l~~~~~vi~dr~~~~--- 66 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKS------------GNEKLFEHFNKLADEDNVIIDRFVYS--- 66 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTT------------CHHHHHHHHHHHTTCCSEEEESCHHH---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchh------------HHHHHHHHHHHHHhCCCeEEeeeecc---
Confidence 378999999999999999999999999999998876422 12333344455656655422221111
Q ss_pred cCCCcceeeec---CCcEEEEEecccchHhhhhcCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhh
Q 003460 598 RSGFKELEVSE---DCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQH 674 (818)
Q Consensus 598 r~~~~~~~~~~---~~~vvIvEG~~~~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~ 674 (818)
...... .... +...+...........|..||++++.++.+.|...|. +......+...+...|...
T Consensus 67 -----~~v~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~-----r~~~~~~~~~~~~~~~~~~ 135 (173)
T 3kb2_A 67 -----NLVYAKKFKDYSI-LTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRG-----DEYIEGKDIDSILELYREV 135 (173)
T ss_dssp -----HHHHTTTBTTCCC-CCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHS-----CSCCCHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHhhH-hhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC-----CcchhhhHHHHHHHHHHHH
Confidence 000000 0000 0001110001111236789999999999999987762 1222223444455555554
Q ss_pred ccccCCcccEEEeCC
Q 003460 675 IEPHLVHAHLKIRND 689 (818)
Q Consensus 675 I~p~~~~ADivI~n~ 689 (818)
...+ ..++++|+++
T Consensus 136 ~~~~-~~~~~~id~~ 149 (173)
T 3kb2_A 136 MSNA-GLHTYSWDTG 149 (173)
T ss_dssp HHTC-SSCEEEEETT
T ss_pred Hhhc-CCCEEEEECC
Confidence 3333 3688898875
No 85
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.73 E-value=2.2e-08 Score=99.69 Aligned_cols=124 Identities=15% Similarity=0.048 Sum_probs=73.9
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (818)
..++.+|+|+|++||||||+|+.|++.+|..++++|++++.....+.. ....+.+.+ ..|..+...........
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~---~~g~~~~~~~~~~~~~~ 79 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSA---RGKKLSEIM---EKGQLVPLETVLDMLRD 79 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCH---HHHHHHHHH---HTTCCCCHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCCh---HHHHHHHHH---HcCCcCCHHHHHHHHHH
Confidence 345678999999999999999999999999999999986643221111 111122222 12322111000000111
Q ss_pred cccccccccCCccEEEEEecccchh------hhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALDA------RLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~~------~l~~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
.+.. . ......+|+||...... ......|.+||+++|.+++.+|...|..
T Consensus 80 ~i~~-~--~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 135 (196)
T 2c95_A 80 AMVA-K--VNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGE 135 (196)
T ss_dssp HHHH-H--TTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHT
T ss_pred HHHh-c--cccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCC
Confidence 1100 0 11345789998432211 1124579999999999999999888863
No 86
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.72 E-value=8.9e-09 Score=104.80 Aligned_cols=115 Identities=15% Similarity=0.082 Sum_probs=68.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~~~~ 142 (818)
.|+|+|++||||||+|+.|++.+|+.++++|++.+.....+.+ +...+... ..+..+.............
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~l-- 72 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETP-------LGLEAKSYIDKGELVPDEVTIGIVKERL-- 72 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCH-------HHHHHHHHHTTTCCCCHHHHHHHHHHHH--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCH-------HHHHHHHHHHCCCCCCHHHHHHHHHHHH--
Confidence 5899999999999999999999999999999987643322211 11111111 1121111001111111111
Q ss_pred cccccCCccEEEEEecccch---hhhh-------cCCCEEEEEEcCHHHHHHHHHHh
Q 003460 143 KVIKGASSGVVIVDGTYALD---ARLR-------SLLDIRVAVVGGVHFSLISKVQY 189 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~---~~l~-------~~~D~~I~Vda~~e~~l~Rri~R 189 (818)
........+|++|.-... ..+. ..+|.+||+++|.+++++|...|
T Consensus 73 --~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 73 --GKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp --TSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred --hcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 111113458889852222 1121 23799999999999999999988
No 87
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.72 E-value=2.1e-08 Score=99.86 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=35.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH-hCCeEEeccceecc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASV-IGCTLISMENYRVG 99 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~-Lg~~vI~~D~~~~~ 99 (818)
.++.+|+|+|++||||||+++.|++. +|+.++++|++.+.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~ 48 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence 34568999999999999999999998 79999999998653
No 88
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.69 E-value=4.1e-08 Score=99.98 Aligned_cols=38 Identities=18% Similarity=0.497 Sum_probs=35.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
|.+|+|+|++||||||+++.|++.+|..++++|++++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 56899999999999999999999999999999999874
No 89
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.67 E-value=2.7e-08 Score=100.96 Aligned_cols=162 Identities=15% Similarity=0.046 Sum_probs=78.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHH----HHhhhcCC--c-cccccchh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQN----LQDLTEGK--D-TLIPMFDY 134 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~----L~~l~~~~--~-i~~p~~d~ 134 (818)
.++|+|+|++||||||+++.||+.||+++++ +++++..........-+++.+.+. +..+..+. . ...+.+..
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIAI 84 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------CHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHHH
Confidence 3589999999999999999999999999999 666543322211111111111111 00000000 0 00000000
Q ss_pred hhhccccccccccCCccEEEEEecccchhhhhcC-CCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHH----Hhhchhhh
Q 003460 135 QQKNRIGSKVIKGASSGVVIVDGTYALDARLRSL-LDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLI----DSIFPLFR 209 (818)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~-~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~----~~~~p~~~ 209 (818)
.... +..+....... -+|++|..+.. -+.+. ..++|||+||.+.+.+|+..+.........+.+ +...+.|+
T Consensus 85 ~~~~-~i~~la~~~~~-~~Vi~Gr~g~~-vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~ 161 (201)
T 3fdi_A 85 RQFN-FIRKKANEEKE-SFVIVGRCAEE-ILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHN 161 (201)
T ss_dssp HHHH-HHHHHHHTSCC-CEEEESTTHHH-HTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHhhcCC-CEEEEECCcch-hcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00011100122 35666543321 12222 358999999999999999887533221121112 12234444
Q ss_pred hcc---CCccccCcEEEECCC
Q 003460 210 KHI---EPDLHHAQIRINNRF 227 (818)
Q Consensus 210 ~~I---ep~~~~ADiII~N~~ 227 (818)
.+. ......+|++|+++.
T Consensus 162 ~~~~~~~~~~~~~dl~Idt~~ 182 (201)
T 3fdi_A 162 FYCESKWGDSRTYDICIKIGK 182 (201)
T ss_dssp HHCSSCTTBGGGCSEEEEESS
T ss_pred HHhCCCCCCcccCCEEEECCC
Confidence 432 233556899998873
No 90
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.66 E-value=2.1e-09 Score=105.32 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=33.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (818)
+.+|+|+|++||||||+++.|+..+|..++++|.+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHH
Confidence 3579999999999999999999999999999998755
No 91
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.65 E-value=5.3e-08 Score=96.72 Aligned_cols=151 Identities=15% Similarity=0.184 Sum_probs=81.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNR 139 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~ 139 (818)
+.+.+|.|+|++||||||+++.|++.+|..+++.|.+...+...... .+.. ....+... .+... ...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~--~~~~-~~~~~~~~---------~~~~~-~~~ 69 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGW--SDRE-WSRRVGAT---------AIMML-YHT 69 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCC--CSHH-HHHHHHHH---------HHHHH-HHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCc--cchH-HHHHhhHH---------HHHHH-HHH
Confidence 35678999999999999999999999999999999975432211000 0111 11111100 00000 000
Q ss_pred ccccccccCCccEEEEEecccch---hh---hh---cCCCEEEEEEcCHHHHHHHHHHhccC-CCc--C-HHHHHH--hh
Q 003460 140 IGSKVIKGASSGVVIVDGTYALD---AR---LR---SLLDIRVAVVGGVHFSLISKVQYDIG-DSC--S-LDSLID--SI 204 (818)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~~---~~---l~---~~~D~~I~Vda~~e~~l~Rri~Rd~~-~~~--s-~e~~~~--~~ 204 (818)
. ...+ .....+|+|+.+... .. +. ...+..||+++|.++.++|...|... .+. . ...... +.
T Consensus 70 ~-~~~l--~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~ 146 (193)
T 2rhm_A 70 A-ATIL--QSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLEL 146 (193)
T ss_dssp H-HHHH--HTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHH
T ss_pred H-HHHH--hCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhh
Confidence 0 0001 112357888887321 11 22 22458899999999999998877642 121 0 111111 11
Q ss_pred chhhhhccCCcc-ccCcEEEECCC
Q 003460 205 FPLFRKHIEPDL-HHAQIRINNRF 227 (818)
Q Consensus 205 ~p~~~~~Iep~~-~~ADiII~N~~ 227 (818)
...+.. .+|.. ..++++|+++.
T Consensus 147 ~~~~~~-~~~~~~~~~~~~Idt~~ 169 (193)
T 2rhm_A 147 VRSRGD-IPPLPLGGPLLTVDTTF 169 (193)
T ss_dssp HHHSCC-CCCCCCCSCEEEEECSS
T ss_pred HHHHhc-CCCccCCCCEEEEeCCC
Confidence 223333 23333 36889998874
No 92
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.64 E-value=5.7e-08 Score=96.11 Aligned_cols=115 Identities=20% Similarity=0.034 Sum_probs=67.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (818)
...+|+|+|++||||||+|+.|++.+|..++++|++.+.....+.+ ....+.+.+. .+... .+.......
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~---~~~~i~~~~~---~g~~~----~~~~~~~~~ 72 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTP---LGERVRPIME---RGDLV----PDDLILELI 72 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCH---HHHHHHHHHH---TTCCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCCh---HHHHHHHHHH---cCCcC----CHHHHHHHH
Confidence 3568999999999999999999999999999999876532111111 0011122221 12111 111111111
Q ss_pred cccccccCCccEEEEEecccchh-------hhhc---CCCEEEEEEcCHHHHHHHHHHhc
Q 003460 141 GSKVIKGASSGVVIVDGTYALDA-------RLRS---LLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~~-------~l~~---~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.. .+. . -+|++|...... .+.. .+|.+||+++|.+.+++|...|.
T Consensus 73 ~~-~l~--~--~~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 73 RE-ELA--E--RVIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp HH-HCC--S--EEEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HH-Hhc--C--CEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 11 111 1 178888643211 1111 26899999999999999988885
No 93
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.64 E-value=1.4e-07 Score=99.37 Aligned_cols=137 Identities=16% Similarity=0.207 Sum_probs=80.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHH---hCCeEE--eccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASV---IGCTLI--SMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~---Lg~~vI--~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~ 134 (818)
.++.+|.|+|++||||||+|+.|++. +|..++ +.|.+...+..+. . . .+.....+.
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~-~--~-~e~~~~~~~--------------- 62 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWK-E--K-YEEFIKKST--------------- 62 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCC-G--G-GHHHHHHHH---------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhh-H--H-HHHHHHHHH---------------
Confidence 35789999999999999999999997 687776 8888765433210 0 0 111111000
Q ss_pred hhhccccccccccCCccEEEEEecccch---hhhhc------CCCEEEEEEcCHHHHHHHHHHhccCCCcCHHHHHHhhc
Q 003460 135 QQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRS------LLDIRVAVVGGVHFSLISKVQYDIGDSCSLDSLIDSIF 205 (818)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~------~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~~~~~~~ 205 (818)
...+. ... .. ..+|+||..... ..+.. ..+..||+++|.+++++|...|.. ..+. +.++..
T Consensus 63 --~~~i~-~~l--~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~--~~~~-~~l~~~- 132 (260)
T 3a4m_A 63 --YRLID-SAL--KN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE--KIPN-EVIKKM- 132 (260)
T ss_dssp --HHHHH-HHH--TT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC--SSCH-HHHHHH-
T ss_pred --HHHHH-HHh--hC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC--CCCH-HHHHHH-
Confidence 00000 011 12 578889866543 12222 237899999999999999888752 1222 333332
Q ss_pred hhhhhccCCcc----ccCcEEEECCC
Q 003460 206 PLFRKHIEPDL----HHAQIRINNRF 227 (818)
Q Consensus 206 p~~~~~Iep~~----~~ADiII~N~~ 227 (818)
+..|-+|.. ..++++|+++.
T Consensus 133 --~~~~e~~~~~~~~~~~~~~Id~~~ 156 (260)
T 3a4m_A 133 --YEKFDEPGKKYKWDEPFLIIDTTK 156 (260)
T ss_dssp --HHHCCCTTSSCGGGCCSEEEETTS
T ss_pred --HHHhcCccccCCCCCCEEEEeCCC
Confidence 333333332 35889998875
No 94
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.63 E-value=1.1e-07 Score=99.18 Aligned_cols=125 Identities=13% Similarity=-0.041 Sum_probs=75.2
Q ss_pred HHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccc
Q 003460 511 LENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 590 (818)
Q Consensus 511 ~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~ 590 (818)
.....+|++|+|+||+||||||+|+.|++.+|..++|.|+..+..... ++ +...+.-..+.+|..+.-..
T Consensus 23 ~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~-------~~---~~g~~i~~~~~~g~~~~~~~ 92 (243)
T 3tlx_A 23 ACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEK-------KT---ELGLKIKNIINEGKLVDDQM 92 (243)
T ss_dssp HHHTSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTS-------SS---HHHHHHHHHHHTTCCCCHHH
T ss_pred HhccCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhc-------cc---hHHHHHHHHHhcCCCCcHHH
Confidence 334567899999999999999999999999999999999998752110 11 01111111222333221111
Q ss_pred ccccccccCCCcceeeecCCcEEEEEecccchH---hhh-------hcCCEEEEEEcChhHHHHHHHhcC
Q 003460 591 FDLETGARSGFKELEVSEDCGVIIFEGVYALHP---EIR-------KSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 591 yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~---~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
.......+.. ......-+|++|...... .+. ...|..|++++|.++.+.|...|.
T Consensus 93 ~~~~~~~~l~-----~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 93 VLSLVDEKLK-----TPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp HHHHHHHHTT-----SGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHHHHHHh-----cccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 1111111110 001134578899433321 222 237899999999999999998885
No 95
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.63 E-value=4e-08 Score=98.13 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=72.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~ 595 (818)
.+.+|+|+|++||||||+|+.|++.+|..++++|+++...... +.+ ....+.+.+ ..|..+.. ...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~----~~~---~~~~i~~~~---~~g~~~~~----~~~ 76 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELAS----ESE---RSKLIRDIM---ERGDLVPS----GIV 76 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHH----TCH---HHHHHHHHH---HTTCCCCH----HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHh----CCH---HHHHHHHHH---HcCCcCCH----HHH
Confidence 3678999999999999999999999999999999998753210 000 001111111 12221100 000
Q ss_pred cccCCCcce-eeecCCcEEEEEecccch---Hhhhh---cCCEEEEEEcChhHHHHHHHhcCc
Q 003460 596 GARSGFKEL-EVSEDCGVIIFEGVYALH---PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 596 ~~r~~~~~~-~~~~~~~vvIvEG~~~~~---~~l~~---~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
+.... ... ........+|+||..... ..+.. ..|..||++++.++++.|...|+.
T Consensus 77 ~~~~~-~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 77 LELLK-EAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp HHHHH-HHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred HHHHH-HHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 00000 000 001134678999976542 22333 578999999999999999888863
No 96
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.62 E-value=2.9e-08 Score=96.61 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=33.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+|+|+|++||||||+|+.|++.+|..++++|++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~ 37 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQK 37 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHH
Confidence 689999999999999999999999999999999764
No 97
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.61 E-value=1e-07 Score=95.89 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=36.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+.+.+|+|+|++||||||+|+.|++.+|..++++|++++.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~ 52 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRA 52 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHH
Confidence 4678999999999999999999999999999999998764
No 98
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.60 E-value=1.4e-08 Score=100.02 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=34.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (818)
|.+|.|+|++||||||+|+.|++.+|+.++++|++++.
T Consensus 4 m~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~ 41 (175)
T 1via_A 4 AKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQ 41 (175)
T ss_dssp -CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHH
Confidence 34699999999999999999999999999999998653
No 99
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.60 E-value=2.4e-08 Score=98.92 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=33.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+|+|+|++||||||+|+.|++.+|+.++++|+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~ 39 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQ 39 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHH
Confidence 589999999999999999999999999999998764
No 100
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.58 E-value=2.3e-07 Score=93.45 Aligned_cols=40 Identities=33% Similarity=0.442 Sum_probs=35.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
..+.+|+|+|++||||||+++.|+..+|..+++.|++...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~ 66 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSP 66 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccH
Confidence 4567899999999999999999999999999999998754
No 101
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=8.5e-08 Score=96.54 Aligned_cols=39 Identities=26% Similarity=0.399 Sum_probs=35.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+..+|+|.|++||||||+++.|++.+|..++++|++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~ 62 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE 62 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH
Confidence 345789999999999999999999999999999998754
No 102
>2fbl_A Hypothetical protein NE1496; APC5855, PSI, protein structure initiative, MCSG, midwest center for structural genomics; 1.90A {Nitrosomonas europaea} SCOP: d.63.1.2
Probab=98.57 E-value=1.1e-07 Score=92.03 Aligned_cols=94 Identities=9% Similarity=0.106 Sum_probs=70.8
Q ss_pred ccccceeeccCCCCCcchhhh-ccCCeeeEeeeCCEEEEEEcceeecCCCcccCceeEEEEec---cHHHHHHhcCCcee
Q 003460 257 EAQTDNFIEMYLRPPSATEEA-RINDWIKMRQSGIRYYLSIGDQRIVDKNFIIRPKAEFEVGR---MTLGGLLDLGYSVV 332 (818)
Q Consensus 257 ~~~~d~y~~~~~r~~~~~dea-~~~~~lRiR~~~~~~~lt~Kg~~~~~~~~~~k~r~E~ev~v---~~~~~L~~LGf~~~ 332 (818)
....+.|++++ ++++ + |||..+++++|||||+. + .+|.|+|..| .+.++|..+ ..
T Consensus 23 ~~i~QgYl~~~------~~~~~v-----RvR~~g~~~~lT~Kg~~----g---~~R~E~E~~I~~~~~~~ll~~~---~~ 81 (153)
T 2fbl_A 23 VPLRQGYLTTP------TDSIEL-----RLRQQGTEYFMTLKSEG----G---LSRQEYEIQIDVTQFEMLWPAT---EG 81 (153)
T ss_dssp EEEEEEESSCT------TSSSEE-----EEEEETTEEEEEEEC-------------CEEEEEECHHHHHHHGGGG---TT
T ss_pred eEEEEEEecCC------CCceEE-----EEEEeCCEEEEEEEcCC----C---ceeEEEEEECCHHHHHHHHhhC---CC
Confidence 44667888853 4556 6 99999999999999887 5 6899999999 566666544 36
Q ss_pred EEEEEEEEEEEeCC-EEEEEeccCC-CC-CCeEEEEecCHHH
Q 003460 333 ASYKRASTYVVYGN-LSVSFETIDT-LD-ETFMVLRGTNRKT 371 (818)
Q Consensus 333 ~~~~K~R~~~~~~~-~~i~lD~v~~-lg-~~fvEiE~~~~~~ 371 (818)
..++|.|..|.+++ ..++||.++| ++ -.++|||..++++
T Consensus 82 ~~I~K~Ry~~~~~~~~~~evD~f~g~~~gL~~aEvE~~~e~e 123 (153)
T 2fbl_A 82 RRVEKTRYSGKLPDGQLFELDVFAGHLSPLMLVEVEFLSEDA 123 (153)
T ss_dssp SEEEEEEEEEECTTCCEEEEEEECGGGTTCEEEEEEESSHHH
T ss_pred CEEEEEEEEEEcCCcEEEEEEEECCcCCCeEEEEEEecCccc
Confidence 78999999999999 9999999986 33 3489999877654
No 103
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.57 E-value=1.4e-07 Score=93.58 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=29.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN 95 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~ 95 (818)
+|+|+|++||||||+|+.|++.+ |+.++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 69999999999999999999988 999999874
No 104
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.57 E-value=3.7e-07 Score=91.55 Aligned_cols=155 Identities=15% Similarity=0.129 Sum_probs=79.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceeccccc----CCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDE----GNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~----~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~ 136 (818)
...+|||+||+||||||+++.|+..+....++.....+.... +-..-..+...+..... .+.-.....+....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 82 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK---EGAFLEHATIYERH 82 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH---HTCEEEEEEETTEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHh---cCcEEeeeeeeccc
Confidence 345899999999999999999998765333333333221110 00011112222222111 11101100000000
Q ss_pred ----hccccccccccCCccEEEEEecccchhhhhcCCC--EEEEEEc-CHHHHHHHHHHhccCCCcCHHHHHHhhchhhh
Q 003460 137 ----KNRIGSKVIKGASSGVVIVDGTYALDARLRSLLD--IRVAVVG-GVHFSLISKVQYDIGDSCSLDSLIDSIFPLFR 209 (818)
Q Consensus 137 ----~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D--~~I~Vda-~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~ 209 (818)
...+. .. ......+++++.......+...++ ..||+.. +.+...+|...|+..........++.+.+...
T Consensus 83 ~~~~~~~i~-~~--l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~ 159 (205)
T 3tr0_A 83 YGTEKDWVL-RQ--LKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMA 159 (205)
T ss_dssp EEEEHHHHH-HH--HHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHT
T ss_pred ccchHHHHH-HH--HHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 00010 11 122447888865333333333333 5577766 47888888888875554566666666655544
Q ss_pred hccCCccccCcEEEECC
Q 003460 210 KHIEPDLHHAQIRINNR 226 (818)
Q Consensus 210 ~~Iep~~~~ADiII~N~ 226 (818)
. .+.||+||.|+
T Consensus 160 ~-----~~~~d~vi~n~ 171 (205)
T 3tr0_A 160 H-----YKEFDYLVVND 171 (205)
T ss_dssp T-----GGGCSEEEECS
T ss_pred c-----ccCCCEEEECC
Confidence 3 47899999998
No 105
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.56 E-value=1.3e-07 Score=97.60 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=34.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (818)
.+++|+|+|++||||||+|+.||+.||+.+++.|.+..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~ 50 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKL 50 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHH
Confidence 46799999999999999999999999999999776644
No 106
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.54 E-value=5.1e-08 Score=96.49 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=34.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+.+|.|+|++||||||+|+.|++.+|..+++.|++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 45688999999999999999999999999999998664
No 107
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.54 E-value=1.7e-07 Score=93.36 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=28.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN 95 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~ 95 (818)
+|+|+|++||||||+++.|++.+ |..++.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 69999999999999999999999 998887654
No 108
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.54 E-value=9e-08 Score=100.38 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=35.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD 101 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~ 101 (818)
..+|+|+|++||||||+++.|++.+|..++++|.+++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~ 87 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM 87 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh
Confidence 3579999999999999999999999999999999876443
No 109
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.53 E-value=2.2e-07 Score=93.46 Aligned_cols=41 Identities=32% Similarity=0.484 Sum_probs=37.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
...|.+|+|+|++||||||+|+.|++.+|..++++|++.+.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~ 57 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRR 57 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHH
Confidence 45678999999999999999999999999999999998764
No 110
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.53 E-value=5.2e-07 Score=88.41 Aligned_cols=40 Identities=23% Similarity=0.210 Sum_probs=35.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
....+|+|+|++||||||+++.|+..+|..+++.|++...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~ 45 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR 45 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccch
Confidence 3457899999999999999999999999999999998753
No 111
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.52 E-value=1e-07 Score=94.03 Aligned_cols=103 Identities=22% Similarity=0.204 Sum_probs=62.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccc------cCCCCCcccHHHHHHHHHhhhcCCccccccchh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVD------EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDY 134 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~------~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~ 134 (818)
.+.+|.|+|++||||||+++.|++.+|+.++++|++.+... ........+.+.+.+.+....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 77 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQM------------ 77 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHH------------
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHH------------
Confidence 34578899999999999999999999999999999754221 111111122222332222110
Q ss_pred hhhccccccccccCCccEEEEEecccchhhhhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 135 QQKNRIGSKVIKGASSGVVIVDGTYALDARLRSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 135 ~~~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.. .. +|+++..... .-....|.+||++++.++.++|...|.
T Consensus 78 -----------~~--g~-~vv~~~~~~~-~~~~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 78 -----------RE--GG-VIVDYHGCDF-FPERWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp -----------HH--CC-EEEECSCCTT-SCGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred -----------hc--CC-EEEEechhhh-cchhcCCEEEEEECCHHHHHHHHHHcC
Confidence 00 11 2233322110 001237899999999999999988885
No 112
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.52 E-value=1.9e-07 Score=93.33 Aligned_cols=61 Identities=3% Similarity=0.049 Sum_probs=38.7
Q ss_pred cCCCEEEEEEcCHHHHHHHHHHhccCCC-cCHHHHHHhhchhhhhccCCcc-ccCcEEEECCC
Q 003460 167 SLLDIRVAVVGGVHFSLISKVQYDIGDS-CSLDSLIDSIFPLFRKHIEPDL-HHAQIRINNRF 227 (818)
Q Consensus 167 ~~~D~~I~Vda~~e~~l~Rri~Rd~~~~-~s~e~~~~~~~p~~~~~Iep~~-~~ADiII~N~~ 227 (818)
...|.+|||++|.+++++|...|..... .......+.+...|..+.+++. ..++++|+|+.
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~ 185 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL 185 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence 4578999999999999999877631100 0001333444455554444444 67899999884
No 113
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.52 E-value=5.9e-08 Score=96.07 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=33.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV 98 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~ 98 (818)
+.+|.|+|++||||||+++.|++.+| ..++++|++.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r 44 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF 44 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHH
Confidence 35899999999999999999999998 89999998755
No 114
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.51 E-value=6.4e-08 Score=94.38 Aligned_cols=39 Identities=26% Similarity=0.257 Sum_probs=34.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
..-+|+|+|++||||||+|+.|++.+|..++++|++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~ 44 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISE 44 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH
Confidence 345899999999999999999999999999999998764
No 115
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.50 E-value=1.5e-07 Score=95.46 Aligned_cols=116 Identities=11% Similarity=0.033 Sum_probs=66.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
.|+|+|++||||||+|+.|++.+|..++++|++.+...... +.-...+.+ .+..|..+.-.........+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~-------~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~ 71 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNG-------TELGLKAKS---FMDQGNLVPDEVTIGIVHER 71 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTT-------CHHHHHHHH---HHHHTCCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcC-------CHHHHHHHH---HHHCCCCCCHHHHHHHHHHH
Confidence 58899999999999999999999999999999987531110 000001111 11112111100000000000
Q ss_pred CCCcceeeecCCcEEEEEecccch---Hhhhh-------cCCEEEEEEcChhHHHHHHHhc
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALH---PEIRK-------SLDLWIAVVGGVHSHLISRVQR 649 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~-------~~D~~I~v~~~~d~rl~Rri~R 649 (818)
. ........+|++|..... ..+.. .+|..|++++|.++.+.|...|
T Consensus 72 l-----~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 72 L-----SKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp H-----TSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred H-----hcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 0 000112457888853322 12222 2789999999999999999888
No 116
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.50 E-value=1.1e-06 Score=86.23 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeE--Eeccceec
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTL--ISMENYRV 98 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~v--I~~D~~~~ 98 (818)
.+|.|+|++||||||+|+.|++.++... ++.|.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 5799999999999999999999998654 46887754
No 117
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.50 E-value=2.2e-07 Score=92.38 Aligned_cols=120 Identities=17% Similarity=0.136 Sum_probs=71.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET 595 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~ 595 (818)
++.+|+|+|++||||||+|+.|++.+|..++++|+++...... ++.....+.+. +..|+.+.. ...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~-------~~~~~~~i~~~---~~~g~~~~~----~~~ 73 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSS-------GSARGKKLSEI---MEKGQLVPL----ETV 73 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT-------TCHHHHHHHHH---HHTTCCCCH----HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHc-------CChHHHHHHHH---HHcCCcCCH----HHH
Confidence 5678999999999999999999999999999999988753211 00001111111 122322110 000
Q ss_pred cccCCCcce-eeecCCcEEEEEecccchHh---h---hhcCCEEEEEEcChhHHHHHHHhcC
Q 003460 596 GARSGFKEL-EVSEDCGVIIFEGVYALHPE---I---RKSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 596 ~~r~~~~~~-~~~~~~~vvIvEG~~~~~~~---l---~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
+.... ... ........+|+||....... + ....|..||++++.++++.|...|.
T Consensus 74 ~~~~~-~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 74 LDMLR-DAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp HHHHH-HHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccC
Confidence 00000 000 00112367899984332211 1 2456899999999999999988775
No 118
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.50 E-value=6.2e-08 Score=94.57 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=34.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.+|+|+|++||||||+|+.|++.+|..++++|+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~ 39 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQH 39 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHH
Confidence 3689999999999999999999999999999998764
No 119
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.50 E-value=8.4e-08 Score=94.00 Aligned_cols=114 Identities=14% Similarity=0.044 Sum_probs=67.5
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHH-HhCCeEEeccceecccccCCCC--CcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLAS-VIGCTLISMENYRVGVDEGNDL--DSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~-~Lg~~vI~~D~~~~~~~~~~~~--~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (818)
+.+|.|+|++||||||+|+.|++ .+|+.++++|.++......... ..++.+. ...+..+ ...
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~ 66 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKK-EGIVTGM--------------QFD 66 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHH-HHHHHHH--------------HHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhh-hhHHHHH--------------HHH
Confidence 46899999999999999999998 6899999999876543221000 1122111 0000000 000
Q ss_pred cccccccc-cCCccEEEEEecccch---hhhhc------CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 139 RIGSKVIK-GASSGVVIVDGTYALD---ARLRS------LLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 139 ~~~~~~~~-~~~~~vVIvEG~~l~~---~~l~~------~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
.+. ..+. ......+|+||..... ..+.. .-...||++++.+++++|...|..
T Consensus 67 ~~~-~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 128 (181)
T 1ly1_A 67 TAK-SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (181)
T ss_dssp HHH-HHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred HHH-HHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc
Confidence 000 0000 0234578999876532 22221 123689999999999999888764
No 120
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.48 E-value=2.4e-08 Score=99.92 Aligned_cols=59 Identities=10% Similarity=0.131 Sum_probs=40.3
Q ss_pred hcCCEEEEEEcChhHHHHHHHhcCccccCcccch---hhHHHhhcchhhhhccccC-CcccEEEeCCC
Q 003460 627 KSLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ---NDIMMTVFPMFQQHIEPHL-VHAHLKIRNDF 690 (818)
Q Consensus 627 ~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~---~~~~~~v~p~~~~~I~p~~-~~ADivI~n~~ 690 (818)
...|..||++++.++++.|...| |+..+. .++...+...|..+..++. ..+|++|+++-
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R-----~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~ 185 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKR-----GRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAEL 185 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHH-----TCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHc-----CChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCC
Confidence 45789999999999999997665 333221 1344555666666555555 67899998764
No 121
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.47 E-value=3e-07 Score=90.88 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=34.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccch
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKS 554 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~ 554 (818)
+.+|.|+|++||||||+++.|++.++ ..++++|++++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~ 45 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE 45 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHH
Confidence 45799999999999999999999998 889999988764
No 122
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.47 E-value=1.6e-07 Score=94.28 Aligned_cols=157 Identities=12% Similarity=0.028 Sum_probs=62.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCC-eEEeccceecccc----cCCCCCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~-~vI~~D~~~~~~~----~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~ 136 (818)
..+|+|+|++||||||+++.|+..+.. .-+......+... ++...-..+...+... ...+..+..+.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 82 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEAL---IKDDQFIEYAEYVGNY 82 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHH---HHcCCeEEEEeECCee
Confidence 458999999999999999999987621 1111111111000 0000000122222221 1222323333322211
Q ss_pred hcccccccc-ccCCccEEEEEecccchhhhhcCC-C-EEEEEE-cCHHHHHHHHHHhccCCCcCHHHHHHhhchhhhhcc
Q 003460 137 KNRIGSKVI-KGASSGVVIVDGTYALDARLRSLL-D-IRVAVV-GGVHFSLISKVQYDIGDSCSLDSLIDSIFPLFRKHI 212 (818)
Q Consensus 137 ~~~~~~~~~-~~~~~~vVIvEG~~l~~~~l~~~~-D-~~I~Vd-a~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p~~~~~I 212 (818)
......... .......+|+|+.+.....+...+ | ..+|+. ++.+...+|...|+..........+..+.+...
T Consensus 83 ~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~--- 159 (207)
T 2j41_A 83 YGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVE--- 159 (207)
T ss_dssp EEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------CGGG---
T ss_pred cCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh---
Confidence 000000000 012246899999887766666555 7 445554 346677777777753221222222232333222
Q ss_pred CCccccCcEEEECC
Q 003460 213 EPDLHHAQIRINNR 226 (818)
Q Consensus 213 ep~~~~ADiII~N~ 226 (818)
....||++|+|+
T Consensus 160 --~~~~~d~vI~n~ 171 (207)
T 2j41_A 160 --MMNLYDYVVVND 171 (207)
T ss_dssp --GGGGCSEEEECS
T ss_pred --ccccCCEEEECC
Confidence 246789999987
No 123
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.47 E-value=3.9e-07 Score=92.01 Aligned_cols=162 Identities=17% Similarity=0.146 Sum_probs=79.7
Q ss_pred hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-eEEeccceecccc----cCCCCCcccHHHHHHHHHhhhcCCccccccc
Q 003460 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRVGVD----EGNDLDSIDFDALVQNLQDLTEGKDTLIPMF 132 (818)
Q Consensus 58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~-~vI~~D~~~~~~~----~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~ 132 (818)
......+|+|+|+|||||||+++.|++.++. ...+....-+... ++....-.+.+.+...+. .+.-+....+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK---EGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHH---TTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHH---cCCCEEeHHh
Confidence 3456678999999999999999999998753 2222222111110 110111123333333322 2222222212
Q ss_pred hhhhhcccc-ccccccCCccEEEEEecccchhhhhcCC---C-EEEEEE-cCHHHHHHHHHHhccCCCcCHHHHHHhhch
Q 003460 133 DYQQKNRIG-SKVIKGASSGVVIVDGTYALDARLRSLL---D-IRVAVV-GGVHFSLISKVQYDIGDSCSLDSLIDSIFP 206 (818)
Q Consensus 133 d~~~~~~~~-~~~~~~~~~~vVIvEG~~l~~~~l~~~~---D-~~I~Vd-a~~e~~l~Rri~Rd~~~~~s~e~~~~~~~p 206 (818)
......... ...........+|+++.......+...+ + ..|||+ ++.+...+|...|.. .+.+.+.++...
T Consensus 85 ~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~---~~~~~i~~rl~~ 161 (204)
T 2qor_A 85 ANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT---EKPEEINKRMQE 161 (204)
T ss_dssp TTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT---SCHHHHHHHHHH
T ss_pred CCCeecCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC---CCHHHHHHHHHH
Confidence 111110000 0000112356788886544333444443 3 889998 898888887766642 233333332211
Q ss_pred hhhhccCC-ccccCcEEEECC
Q 003460 207 LFRKHIEP-DLHHAQIRINNR 226 (818)
Q Consensus 207 ~~~~~Iep-~~~~ADiII~N~ 226 (818)
.... +.+ ....+|++|.|+
T Consensus 162 ~~~~-~~~~~~~~~d~vi~n~ 181 (204)
T 2qor_A 162 LTRE-MDEADKVGFNYFIVND 181 (204)
T ss_dssp HHHH-HHHHHHHTCSEEEECS
T ss_pred HHHH-HHHhhhccCcEEEECc
Confidence 1111 111 346789999987
No 124
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.46 E-value=4.6e-07 Score=89.61 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=32.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceec
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRV 98 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~ 98 (818)
|.+|.|+|++||||||+|+.|++.++ +.+++.|++..
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 46899999999999999999999997 77888777643
No 125
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.46 E-value=2.6e-07 Score=94.31 Aligned_cols=120 Identities=13% Similarity=-0.033 Sum_probs=69.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (818)
+++.|.|.|++||||||+|+.|++.+|..++++|++.+.....+.+. . ..+.+.+.. |..+. +......+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~--g-~~i~~~~~~---g~~~~----~~~~~~~i 73 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKI--G-LEAKSIIES---GNFVG----DEIVLGLV 73 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--C--C-HHHHHHHHH---TCCCC----HHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHH--H-HHHHHHHHC---CCcCC----HHHHHHHH
Confidence 34679999999999999999999999999999999866432222111 1 111222211 21110 00000000
Q ss_pred cccccccCCccEEEEEecccch---hh----h---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 141 GSKVIKGASSGVVIVDGTYALD---AR----L---RSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~---~~----l---~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
............+|++|...-. .. + ....|.+||++++.++.++|...|.
T Consensus 74 ~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 74 KEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp HHHHHTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHhccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 0000011123457889842210 11 1 1246899999999999999988775
No 126
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.45 E-value=2.9e-07 Score=93.96 Aligned_cols=121 Identities=12% Similarity=0.037 Sum_probs=68.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRI 140 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~ 140 (818)
+++.|+|.|++||||||+|+.|++.+|..++++|++.+.....+.+ . -..+.+.+. .|................
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~--~-g~~i~~~~~---~g~~~~~~~~~~~l~~~l 76 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQ--L-GLEAKKIMD---QGGLVSDDIMVNMIKDEL 76 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCH--H-HHHHHHHHH---TTCCCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCCh--H-HHHHHHHHH---CCCcCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999986643221111 0 011111111 121110000000001110
Q ss_pred cccccccCCccEEEEEecccch---h----h---hhcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 141 GSKVIKGASSGVVIVDGTYALD---A----R---LRSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 141 ~~~~~~~~~~~vVIvEG~~l~~---~----~---l~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.. .......+|++|..... . . ....+|.+||++++.+..++|...|.
T Consensus 77 ~~---~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 77 TN---NPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp HH---CGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred Hh---ccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence 00 00112357889832111 1 1 12357899999999999999988775
No 127
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.44 E-value=2.9e-07 Score=93.51 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=33.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.|+|+|++||||||+|+.|++.+|+.++++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~ 37 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 588999999999999999999999999999999875
No 128
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.42 E-value=3.7e-07 Score=92.49 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=32.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
..+|+|+|++||||||+++.|++.||..+++ ++.+.
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~ 41 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLD 41 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHH
Confidence 4589999999999999999999999999998 66654
No 129
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.41 E-value=2.6e-07 Score=94.81 Aligned_cols=119 Identities=11% Similarity=0.019 Sum_probs=68.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~ 138 (818)
.++.+|+|.|++||||||+|+.|++.+|..++++|++.+.....+.+ +...+..+ ..|..+...........
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~-------~g~~i~~~~~~g~~~~~~~~~~~~~~ 77 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTE-------IGVLAKAFIDQGKLIPDDVMTRLALH 77 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCH-------HHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCCh-------HHHHHHHHHHcCCcCCHHHHHHHHHH
Confidence 34678999999999999999999999999999999986642211110 11111111 11211110000000111
Q ss_pred cccccccccCCccEEEEEecccch---hhhh--cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALD---ARLR--SLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~---~~l~--~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
+.. .+....+|+||..... ..+. ...|.+||++++.+.+++|...|.
T Consensus 78 ~l~-----~~~~~~~vid~~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~~~R~~~R~ 129 (227)
T 1zd8_A 78 ELK-----NLTQYSWLLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW 129 (227)
T ss_dssp HHH-----TCTTSCEEEESCCCSHHHHHHHHTTSCCCEEEEEECCHHHHHHHHTCEE
T ss_pred HHh-----cccCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHcCc
Confidence 110 0012347789854321 1122 347899999999999999987763
No 130
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.41 E-value=3.6e-07 Score=90.61 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=35.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
..+.+|.|+|++||||||+++.|++.+|..+++.|++..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~ 41 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKE 41 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHH
Confidence 357889999999999999999999999999999998754
No 131
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.40 E-value=1e-06 Score=92.46 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=33.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (818)
|.+|+|+|++||||||+|+.|++.+|+.++++|++
T Consensus 1 M~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 1 MLLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred CeEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 46899999999999999999999999999999996
No 132
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.39 E-value=3.8e-07 Score=93.58 Aligned_cols=124 Identities=12% Similarity=-0.015 Sum_probs=73.6
Q ss_pred hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhh
Q 003460 58 KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQ 136 (818)
Q Consensus 58 ~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~ 136 (818)
+..++.+|.|.||+||||||.|+.|++.+|+.+|+++++.+.....+.+ +-..+.. +..|+-+.-.......
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~-------lg~~~~~~~~~G~lVpde~~~~lv 97 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSP-------KGKELKAMMERGELVPLEVVLALL 97 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCH-------HHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCc-------hHHHHHHHHhcCCCCCHHHHHHHH
Confidence 4466789999999999999999999999999999999987743322211 1111222 2223322111111111
Q ss_pred hccccccccccCCccEEEEEecccch---h---hhhcCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 137 KNRIGSKVIKGASSGVVIVDGTYALD---A---RLRSLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~---~---~l~~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
..+... ......-+|+||.---. . ......|.+|+++++.++...|...|..
T Consensus 98 ~~~l~~---~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~ 155 (217)
T 3umf_A 98 KEAMIK---LVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAE 155 (217)
T ss_dssp HHHHHH---HTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC--
T ss_pred HHHHhh---ccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccc
Confidence 111100 01223468999952111 1 1223468999999999999988877753
No 133
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.38 E-value=5.2e-07 Score=92.58 Aligned_cols=116 Identities=13% Similarity=0.053 Sum_probs=68.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (818)
+|+|.|++||||||+|+.|++.+|..++++|++.+.....+.+ + -..+.+.+ ..|..+ | +......+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~--~-g~~i~~~~---~~g~~~--~--~~~~~~~i~~~ 71 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTE--L-GKKAKEFI---DRGDLV--P--DDITIPMVLET 71 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCH--H-HHHHHHHH---TTTCCC--C--HHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCH--H-HHHHHHHH---HcCCcC--c--HHHHHHHHHHH
Confidence 6899999999999999999999999999999986643211111 0 01112221 122211 0 01111111110
Q ss_pred ccccCCccEEEEEecccc-h--hhh-------hcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 144 VIKGASSGVVIVDGTYAL-D--ARL-------RSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~-~--~~l-------~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
..... ...+|+||.... . ..+ ....|.+||+++|.+..++|...|.
T Consensus 72 l~~~~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 72 LESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp HHHHC-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred Hhccc-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 10111 346889984321 1 111 1347899999999999999988875
No 134
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.38 E-value=5.7e-07 Score=90.79 Aligned_cols=132 Identities=16% Similarity=0.127 Sum_probs=67.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC-cccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDL 593 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~-~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~ 593 (818)
..+.+|+|+|||||||||+++.|++.++. ...+..+.-+.....+.+-.+..-.+.+.+.+ .+.+|.-+....+..
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 86 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER---KLKEGQFLEFDKYAN 86 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHH---HHHTTCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHH---HHHcCCCEEeHHhCC
Confidence 45678899999999999999999998752 22222221111111111100111122333332 233455555444432
Q ss_pred cccccCCCcceeeecCCcEEEEEecccchHhhhhcC---C-EEEEEE-cChhHHHHHHHhc
Q 003460 594 ETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSL---D-LWIAVV-GGVHSHLISRVQR 649 (818)
Q Consensus 594 ~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~---D-~~I~v~-~~~d~rl~Rri~R 649 (818)
...................+|+++.......++..+ + ..||++ ++.+....|...|
T Consensus 87 ~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R 147 (204)
T 2qor_A 87 NFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNR 147 (204)
T ss_dssp EEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTC
T ss_pred CeecCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHc
Confidence 211110000001123457889987554444555554 3 789998 7777777766554
No 135
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.37 E-value=4.4e-07 Score=92.24 Aligned_cols=117 Identities=14% Similarity=0.032 Sum_probs=65.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCccccccchhhhhcccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKNRIGSK 143 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~~~~~~ 143 (818)
.|+|+|++||||||+|+.|++.+|..++++|++.+.....+.+..-. +.+.+. .+..+....+.........
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~---i~~~~~---~g~~~~~~~~~~~i~~~l~-- 73 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQ---AKDIMD---AGKLVTDELVIALVKERIA-- 73 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGG---GHHHHH---HTCCCCHHHHHHHHHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHH---HHHHHH---CCCcCCHHHHHHHHHHHHh--
Confidence 58999999999999999999999999999999866421111111000 111111 1111000000000000000
Q ss_pred ccccCCccEEEEEecccch---hhhh---cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 144 VIKGASSGVVIVDGTYALD---ARLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 144 ~~~~~~~~vVIvEG~~l~~---~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
.......+|++|.-... ..+. ...|.+||++++.+.+++|...|.
T Consensus 74 --~~~~~~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 74 --QEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp --SGGGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred --ccccCCCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 00112347788842111 1222 246999999999999999988775
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.35 E-value=7.7e-07 Score=87.52 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=24.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI 91 (818)
++.+|.|+|++||||||+|+.|++.+|..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4578999999999999999999999998887
No 137
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.34 E-value=2.6e-06 Score=85.60 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=35.5
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHh---CCe--EEeccceeccc
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVI---GCT--LISMENYRVGV 100 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~L---g~~--vI~~D~~~~~~ 100 (818)
.....+|+|+|++||||||+++.|+..+ |.. .++.|++...+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~ 68 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGL 68 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHh
Confidence 4567899999999999999999999988 655 78888876544
No 138
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.32 E-value=5.1e-07 Score=91.03 Aligned_cols=36 Identities=14% Similarity=0.148 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (818)
.+.+|+|+|++||||||+|+.|++.++...++.|.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 44 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL 44 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 457899999999999999999999987665666443
No 139
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.32 E-value=4.5e-08 Score=101.09 Aligned_cols=169 Identities=15% Similarity=0.070 Sum_probs=91.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-Ccccccccccch----hhhhcccCCCcccc----cHHHHHHHHHHH-----
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-CEVVSLESYFKS----EQVKDFKYDDFSSL----DLSLLSKNISDI----- 580 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-~~vis~Ddfy~~----~~~~~~~~d~p~t~----D~~ll~~~L~~L----- 580 (818)
.+..+|+|.|++||||||+++.|+..-| +.+...+..... .......+..+..+ ....+...+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~i 97 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTN 97 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhccCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHHHHHHHHhccc
Confidence 4568999999999999999999987622 112222211100 00000000111110 011111122222
Q ss_pred ----hcCCceecccccccccccCCCcceeeecCCcEEEEEecccch-HhhhhcCCEEEEEEcChhHHHHHHHhcCccccC
Q 003460 581 ----RNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH-PEIRKSLDLWIAVVGGVHSHLISRVQRDKSRMG 655 (818)
Q Consensus 581 ----~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~-~~l~~~~D~~I~v~~~~d~rl~Rri~Rd~~~rg 655 (818)
..|..+..++|.++...+... ...+..+.++++|+.+. +......|++||+++|.++++.|...|+...
T Consensus 98 ~~~l~~~r~v~~dry~~s~~ayq~~----~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~-- 171 (230)
T 2vp4_A 98 KKLKIMERSIFSARYCFVENMRRNG----SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSE-- 171 (230)
T ss_dssp SSEEEEESCHHHHHHTHHHHHHHHT----SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHHHHCCGG--
T ss_pred cCceeecCCccccHHHHHHHHHHcC----CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHHHcCCcc--
Confidence 223455666677765332210 01233566777777643 3345568999999999999999987764210
Q ss_pred cccchhhHHHhhcchhhhhcccc--CCccc-EEEeCC
Q 003460 656 CFMSQNDIMMTVFPMFQQHIEPH--LVHAH-LKIRND 689 (818)
Q Consensus 656 ~~~~~~~~~~~v~p~~~~~I~p~--~~~AD-ivI~n~ 689 (818)
...+..+|...++..|.++...+ ...++ ++|+++
T Consensus 172 e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~ 208 (230)
T 2vp4_A 172 ESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD 208 (230)
T ss_dssp GTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred cccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence 11111256777888888876433 33444 677765
No 140
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.31 E-value=1.1e-06 Score=87.15 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=35.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHH-hCCcccccccccch
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANI-VGCEVVSLESYFKS 554 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~-lg~~vis~Ddfy~~ 554 (818)
.++.+|+|+|++||||||+++.|++. +|+.++++|++...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~ 48 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence 34568999999999999999999999 79999999998765
No 141
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.30 E-value=9.8e-07 Score=91.04 Aligned_cols=120 Identities=17% Similarity=0.088 Sum_probs=68.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhhh-cCCccccccchhhhhc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLT-EGKDTLIPMFDYQQKN 138 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~-~~~~i~~p~~d~~~~~ 138 (818)
..+..|.|.|++||||||+|+.|++.+|+.++++|++.+.....+.+ +.+.+..+. .+..+.-.........
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~-------~g~~i~~~~~~g~~~~~~~~~~~i~~ 86 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSE-------LGKKLKATMDAGKLVSDEMVLELIEK 86 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCH-------HHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCh-------hHHHHHHHHHCCCcCCHHHHHHHHHH
Confidence 45678999999999999999999999999999999876532111100 111111111 1211100000000111
Q ss_pred cccccccccCCccEEEEEeccc-c------hhhhh---cCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 139 RIGSKVIKGASSGVVIVDGTYA-L------DARLR---SLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l-~------~~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
... .......+|++|... . ...+. ...|.+||++++.+..+.|...|.
T Consensus 87 ~l~----~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 87 NLE----TPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144 (233)
T ss_dssp HHT----SGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred HHh----cccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 110 001123478898321 1 11111 247999999999999999988774
No 142
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.30 E-value=2.1e-07 Score=95.98 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=33.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
...+|+|+|++||||||+++.|++.+|+.+++.|.+..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~ 50 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKL 50 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHH
Confidence 46799999999999999999999999999999666544
No 143
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.30 E-value=1.3e-06 Score=89.15 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=36.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+++.+|.|.|++||||||+|+.|++.++..++++|++.+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 41 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRS 41 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHH
Confidence 3567899999999999999999999999999999999875
No 144
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.29 E-value=1.1e-06 Score=88.03 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=57.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC-cccccccccchhhh-----hcccCCCcccccHHHHHHHHHHHhcCCceecc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQV-----KDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP 589 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~-~vis~Ddfy~~~~~-----~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P 589 (818)
...+|+|.||+||||||+++.|+..+.. .-++..+..+.... ..+.+. +.+.+.. ....|..+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~---~~~~~~~~~~~ 76 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFK-----TRDAFEA---LIKDDQFIEYA 76 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEEC-----CHHHHHH---HHHTTCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEc-----CHHHHHH---HHHcCCeEEEE
Confidence 4568999999999999999999986621 11111111111000 011111 1222222 13445555555
Q ss_pred cccccccccCCCcceeeecCCcEEEEEecccchHhhhhcC-C-EEEEEE-cChhHHHHHHHhcC
Q 003460 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALHPEIRKSL-D-LWIAVV-GGVHSHLISRVQRD 650 (818)
Q Consensus 590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~~-D-~~I~v~-~~~d~rl~Rri~Rd 650 (818)
.+.....................+|+|+.+.+...+...+ | ..+++. ++.+....|...|+
T Consensus 77 ~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~ 140 (207)
T 2j41_A 77 EYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRG 140 (207)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC------------
T ss_pred eECCeecCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcC
Confidence 5543211100000011122357899999887766676666 7 455554 34567777776664
No 145
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.29 E-value=1.4e-06 Score=86.34 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=29.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES 550 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l---g~~vis~Dd 550 (818)
+|+|+|++||||||+|+.|++.+ |..++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 68999999999999999999988 888998875
No 146
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.29 E-value=1e-06 Score=91.01 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=71.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHhh-hcCCccccccchhhhhcc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL-TEGKDTLIPMFDYQQKNR 139 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l-~~~~~i~~p~~d~~~~~~ 139 (818)
..+.+||.|++||||||+|+.|++.+|+.+|+++++.+.....+.+ +-+.+..+ ..|..+.-.........+
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~-------lG~~i~~~~~~G~lvpdei~~~ll~~~ 79 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTP-------LGVEAKTYMDEGKLVPDSLIIGLVKER 79 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCH-------HHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCCh-------HHHHHHHHHhhccccccHHHHHHHHHH
Confidence 3467899999999999999999999999999999987643222111 11222221 123221111111111111
Q ss_pred ccccccccCCccEEEEEecccc-h--hhhh---cCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 140 IGSKVIKGASSGVVIVDGTYAL-D--ARLR---SLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 140 ~~~~~~~~~~~~vVIvEG~~l~-~--~~l~---~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
... .....-+|+||.--- . ..+. ...|.+|++++|.++.+.|...|..
T Consensus 80 l~~----~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~ 133 (230)
T 3gmt_A 80 LKE----ADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT 133 (230)
T ss_dssp HHS----GGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred HhC----cccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence 111 111224788996221 1 2222 2479999999999999999998863
No 147
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.28 E-value=2.4e-07 Score=94.66 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=36.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVG 99 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~ 99 (818)
+.+.+|.|.|++||||||+|+.|++.+|..++++|++.+.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~ 42 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRA 42 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 3567899999999999999999999999999999998664
No 148
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.27 E-value=2.9e-06 Score=83.46 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=29.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh---CCeEEeccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISMEN 95 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D~ 95 (818)
+..+|+|+|++||||||+++.|++.+ |.+++++|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 35689999999999999999999988 877775543
No 149
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.27 E-value=1.9e-06 Score=85.38 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=32.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVG 99 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~ 99 (818)
....+|+|+|++||||||+++.|++.++ +.+++.|.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~ 55 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTT 55 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHH
Confidence 3468899999999999999999999884 356787877443
No 150
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.27 E-value=1.3e-06 Score=86.12 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=35.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.+.+|+|+|++||||||+++.|++.+|..++++|++.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~ 41 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRD 41 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 456899999999999999999999999999999988764
No 151
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.26 E-value=1.3e-06 Score=86.93 Aligned_cols=25 Identities=40% Similarity=0.606 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
.+|+|+||+||||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998653
No 152
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.26 E-value=1.2e-07 Score=101.72 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=89.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccCCC-CCcccHHHHHHHHHhhhcCCccccccchhhh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEGND-LDSIDFDALVQNLQDLTEGKDTLIPMFDYQQ 136 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~~~-~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~ 136 (818)
..+.+|.|+||+||||||||..|++.++..+|+.|++ |+++.-... |..-+.+....+|-+...-.+ .+..-++..
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e-~~s~~~f~~ 86 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQ-AYSAADFRR 86 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTS-CCCHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccc-cccHHHHHH
Confidence 3467899999999999999999999999999999995 887654432 221121111111111111111 001111211
Q ss_pred hccccccccccCCccEEEEEecccchhhhhcCC-CEEEEEEcCHHHHHHHHHHhccCCC--cCHHHHHHhhchhhhhccC
Q 003460 137 KNRIGSKVIKGASSGVVIVDGTYALDARLRSLL-DIRVAVVGGVHFSLISKVQYDIGDS--CSLDSLIDSIFPLFRKHIE 213 (818)
Q Consensus 137 ~~~~~~~~~~~~~~~vVIvEG~~l~~~~l~~~~-D~~I~Vda~~e~~l~Rri~Rd~~~~--~s~e~~~~~~~p~~~~~Ie 213 (818)
........+......+|+|.|.+++...+..-+ +.. .++.+.+ ..+....... ..+.+.+..+.|.....
T Consensus 87 ~a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p---~~~~~~R--~~l~~~~~~~g~~~l~~~L~~~DP~~A~r-- 159 (316)
T 3foz_A 87 DALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLP---SADPEVR--ARIEQQAAEQGWESLHRQLQEVDPVAAAR-- 159 (316)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCC---CCCHHHH--HHHHHHHHHHHHHHHHHHHHHHCHHHHHH--
T ss_pred HHHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCC---CCCHHHH--HHHHHHHHhcCHHHHHHHHHHhCHHHHhh--
Confidence 111111112233445689999999876655322 221 2344432 2221111000 12223333445554443
Q ss_pred CccccCcEEEECCCCCChhhhhhcccCccc-CCccccccccc
Q 003460 214 PDLHHAQIRINNRFVSSFREAIYKLKCRSE-APGACSISAFQ 254 (818)
Q Consensus 214 p~~~~ADiII~N~~~~~~~~~~~~l~~~~~-~l~~~~~~~~~ 254 (818)
|-.|| ++.++++++. ..+|+..+.+.
T Consensus 160 --------i~pnd-------~~Ri~RALEV~~~TG~~~S~~~ 186 (316)
T 3foz_A 160 --------IHPND-------PQRLSRALEVFFISGKTLTELT 186 (316)
T ss_dssp --------SCTTC-------HHHHHHHHHHHHHHSSCHHHHH
T ss_pred --------CCCcc-------HHHHHHHHHHHHHHCCCHHHHh
Confidence 33467 7888999887 66676655543
No 153
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.26 E-value=5.9e-07 Score=87.89 Aligned_cols=114 Identities=12% Similarity=0.010 Sum_probs=65.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHH-HhCCcccccccccchhhhhcccCCCcccccH---HHHHHHHHHHhcCCceeccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMAN-IVGCEVVSLESYFKSEQVKDFKYDDFSSLDL---SLLSKNISDIRNGRRTKVPIFD 592 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~-~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~---~ll~~~L~~L~~g~~v~~P~yD 592 (818)
|.+|.|.|++||||||+|+.|++ .++..++++|.+..........+ ...++. ..+.+.+..+.. +
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~--- 70 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERD--EYKYTKKKEGIVTGMQFDTAK------S--- 70 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGG--GCCCCHHHHHHHHHHHHHHHH------H---
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccc--hhhhchhhhhHHHHHHHHHHH------H---
Confidence 57899999999999999999999 68889999987654311100010 001111 111111111100 0
Q ss_pred ccccccCCCcceeeecCCcEEEEEecccch---Hhhhhc-----CC-EEEEEEcChhHHHHHHHhcCc
Q 003460 593 LETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKS-----LD-LWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 593 ~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~~-----~D-~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
..........+|++|..... ..+.+. .+ ..||++++.++.+.|...|..
T Consensus 71 ----------~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 128 (181)
T 1ly1_A 71 ----------ILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (181)
T ss_dssp ----------HHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred ----------HHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc
Confidence 00000223578888876532 223221 22 689999999999999887753
No 154
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.26 E-value=7.1e-08 Score=103.66 Aligned_cols=42 Identities=33% Similarity=0.394 Sum_probs=37.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccccC
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDEG 103 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~~ 103 (818)
+.+|+|+||+||||||||..|++.++..+|++|++ |+++.-.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~ig 46 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIG 46 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeec
Confidence 46899999999999999999999999999999997 8876543
No 155
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.26 E-value=2.1e-06 Score=84.84 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=31.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~ 553 (818)
.+|.|.|++||||||+|+.|++.++ +.+++.|++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 4789999999999999999999987 66777777764
No 156
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.24 E-value=4.1e-06 Score=83.83 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
..+|||.||+||||||+++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45899999999999999999998764
No 157
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.24 E-value=3.6e-07 Score=99.30 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=37.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--eccccc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVDE 102 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~~ 102 (818)
.++.+|.|+||+||||||||..||+.+|..+||+|++ |+++.-
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdI 82 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDI 82 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTT
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceee
Confidence 3456899999999999999999999999999999996 776543
No 158
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.24 E-value=1.6e-06 Score=93.80 Aligned_cols=40 Identities=38% Similarity=0.579 Sum_probs=35.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--ecccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGVD 101 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~~ 101 (818)
+.+|.|+||+||||||+|..|++.+|+.+|++|++ |+++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~ 46 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMD 46 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCC
Confidence 35899999999999999999999999999999996 65544
No 159
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.23 E-value=3e-06 Score=85.08 Aligned_cols=27 Identities=37% Similarity=0.372 Sum_probs=25.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGC 88 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~ 88 (818)
+.+|+|.|++||||||+|+.|++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999876
No 160
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.23 E-value=1.9e-06 Score=88.33 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=35.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.++.+|.|.|++||||||+|+.|++.+|..++++|+++..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 44 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRD 44 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHH
Confidence 3567899999999999999999999999999999998875
No 161
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.23 E-value=2.3e-06 Score=86.80 Aligned_cols=42 Identities=29% Similarity=0.351 Sum_probs=34.4
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhC------CeEEeccceeccc
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGV 100 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~ 100 (818)
.....+|.|.|++||||||+++.|++.++ +.+++.|.+...+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l 69 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL 69 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhh
Confidence 34567899999999999999999999886 6778877775433
No 162
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.21 E-value=2.4e-06 Score=91.19 Aligned_cols=114 Identities=15% Similarity=0.047 Sum_probs=67.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccceecccccC--CCCCcccHHHHHHHHHhhhcCCccccccchhhhhc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMENYRVGVDEG--NDLDSIDFDALVQNLQDLTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~~~~~~~~~--~~~~~~d~~~l~~~L~~l~~~~~i~~p~~d~~~~~ 138 (818)
+.+|.|+|++||||||+|+.|++.+ |+.+|++|.++..+... +....++... ...+..+ ...
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~~~~~~~~~-~~~~~~~--------------~~~ 66 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKK-EGIVTGM--------------QFD 66 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC---CCHHH-HHHHHHH--------------HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCcccccccchhh-hhHHHHH--------------HHH
Confidence 3689999999999999999999874 89999999775533221 1001122110 0000000 000
Q ss_pred cccccccc-cCCccEEEEEecccch---hhhhc------CCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 139 RIGSKVIK-GASSGVVIVDGTYALD---ARLRS------LLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 139 ~~~~~~~~-~~~~~vVIvEG~~l~~---~~l~~------~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
... ..+. ......+|+||..... ..+.. .-+..||++++.++.++|...|..
T Consensus 67 ~~~-~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 128 (301)
T 1ltq_A 67 TAK-SILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (301)
T ss_dssp HHH-HHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred HHH-HHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence 000 0010 0234578999977543 22221 123789999999999999988864
No 163
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.21 E-value=2.3e-06 Score=87.20 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=35.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchh
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSE 555 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~ 555 (818)
+...|.|.|++||||||+|+.|++.+|..++++|++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~ 43 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREA 43 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHH
Confidence 3467899999999999999999999999999999988753
No 164
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.18 E-value=7.2e-07 Score=91.97 Aligned_cols=62 Identities=5% Similarity=0.044 Sum_probs=41.1
Q ss_pred hhcCCCEEEEEEcCHHHHHHHHHHhccCCCc-CHHHHHHhhchhhhhccCCc--cccCc-EEEECC
Q 003460 165 LRSLLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDSIFPLFRKHIEPD--LHHAQ-IRINNR 226 (818)
Q Consensus 165 l~~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~-s~e~~~~~~~p~~~~~Iep~--~~~AD-iII~N~ 226 (818)
.....|++|||++|++++++|...|+..... ...++.+++...|..+++.+ ...++ ++|+++
T Consensus 143 ~~~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~ 208 (230)
T 2vp4_A 143 IHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD 208 (230)
T ss_dssp BCCCCSEEEEEECCHHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred hcCCCCEEEEEeCCHHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence 3456899999999999999998887532111 11245666667777765332 34454 777776
No 165
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.18 E-value=4.5e-06 Score=87.72 Aligned_cols=105 Identities=11% Similarity=0.140 Sum_probs=63.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH---hCCccc--ccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANI---VGCEVV--SLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPI 590 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~---lg~~vi--s~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~ 590 (818)
++.+|.|+|++||||||+|+.|++. .|..++ +.|.+.... . +|+..+ ...+........
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l--~--~~~~~~---e~~~~~~~~~~i--------- 66 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF--P--VWKEKY---EEFIKKSTYRLI--------- 66 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTS--S--SCCGGG---HHHHHHHHHHHH---------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHH--h--hhhHHH---HHHHHHHHHHHH---------
Confidence 4678999999999999999999997 577666 777764321 0 121111 111111111000
Q ss_pred ccccccccCCCcceeeecCCcEEEEEecccch---Hhhhhc------CCEEEEEEcChhHHHHHHHhcC
Q 003460 591 FDLETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKS------LDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 591 yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~~------~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
...... ..+|++|..... ..+... .+..||++++.++++.|...|.
T Consensus 67 -------------~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 67 -------------DSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp -------------HHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred -------------HHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 000112 578888855432 223222 3689999999999999987764
No 166
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.17 E-value=3.8e-06 Score=86.07 Aligned_cols=116 Identities=15% Similarity=0.044 Sum_probs=66.3
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
+|.|.|++||||||+|+.|++.+|..++++|++.+..-.. +.+ .-..+.+. +..|+.+ |. ......
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~----~~~---~g~~i~~~---~~~g~~~--~~--~~~~~~ 67 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGG----GTE---LGKKAKEF---IDRGDLV--PD--DITIPM 67 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTT----TCH---HHHHHHHH---HTTTCCC--CH--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHc----CCH---HHHHHHHH---HHcCCcC--cH--HHHHHH
Confidence 6889999999999999999999999999999988752100 000 00111111 1122211 00 000000
Q ss_pred CCCcceeeecCCcEEEEEecccch---Hhhh-------hcCCEEEEEEcChhHHHHHHHhcC
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALH---PEIR-------KSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~---~~l~-------~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
.. ....... ...+|++|.-... ..+. ...|..||++++.+..+.|...|.
T Consensus 68 i~-~~l~~~~-g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 68 VL-ETLESKG-KDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp HH-HHHHHHC-TTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred HH-HHHhccc-CCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 00 0000001 3578889843321 1121 236899999999999999988875
No 167
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.17 E-value=3.5e-06 Score=84.85 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=30.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf 551 (818)
++.+|+|+|++||||||+++.|++.++...++.|.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~ 44 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL 44 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 567899999999999999999999988767777543
No 168
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.17 E-value=2.2e-06 Score=84.37 Aligned_cols=105 Identities=16% Similarity=0.230 Sum_probs=64.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhh-cccCCCc-ccccHHHHHHHHHH-HhcCCceeccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVK-DFKYDDF-SSLDLSLLSKNISD-IRNGRRTKVPIFD 592 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~-~~~~d~p-~t~D~~ll~~~L~~-L~~g~~v~~P~yD 592 (818)
.+.+|.|+|++||||||+++.|++.+|..++++|++....... .+..... ...+.+.+.+.+.. +..|..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v------ 83 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVI------ 83 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCCEE------
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCCEE------
Confidence 3456789999999999999999999999999999987653211 1110000 11233334443332 2222211
Q ss_pred ccccccCCCcceeeecCCcEEEEEeccc-chHhhhhcCCEEEEEEcChhHHHHHHHhcC
Q 003460 593 LETGARSGFKELEVSEDCGVIIFEGVYA-LHPEIRKSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 593 ~~~~~r~~~~~~~~~~~~~vvIvEG~~~-~~~~l~~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
+++... +.+ ....|..||++++.++.+.|...|.
T Consensus 84 ----------------------v~~~~~~~~~--~~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 84 ----------------------VDYHGCDFFP--ERWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp ----------------------EECSCCTTSC--GGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred ----------------------EEechhhhcc--hhcCCEEEEEECCHHHHHHHHHHcC
Confidence 121111 111 1236899999999999999988774
No 169
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.17 E-value=3e-06 Score=87.11 Aligned_cols=27 Identities=37% Similarity=0.457 Sum_probs=16.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH-HHhCC
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLA-SVIGC 88 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La-~~Lg~ 88 (818)
..+|||+||+||||||+++.|+ ..+..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----C
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4589999999999999999999 76643
No 170
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.15 E-value=8.2e-07 Score=87.13 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=33.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+|.|+|++||||||+|+.|++.+|+.+++.|+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~ 41 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQ 41 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHH
Confidence 588999999999999999999999999999998764
No 171
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.15 E-value=4.7e-06 Score=83.97 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=25.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~ 88 (818)
++.+|+|+|++||||||+|+.|++.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999998753
No 172
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.14 E-value=4.9e-06 Score=93.60 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=64.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKN 138 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~ 138 (818)
..+.+|.|+|++||||||+|+.|++.+|+.+|+.|.+. .+..+.+.+.. +..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------~~~~~~~~~~~~l~~--------------- 308 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG------------SWQRCVSSCQAALRQ--------------- 308 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC------------SHHHHHHHHHHHHHT---------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH------------HHHHHHHHHHHHHhc---------------
Confidence 45688999999999999999999999999999999972 11222222111 111
Q ss_pred cccccccccCCccEEEEEecccch---hhhh------cCCCEEEEEEcCHHHHHHHHHHhcc
Q 003460 139 RIGSKVIKGASSGVVIVDGTYALD---ARLR------SLLDIRVAVVGGVHFSLISKVQYDI 191 (818)
Q Consensus 139 ~~~~~~~~~~~~~vVIvEG~~l~~---~~l~------~~~D~~I~Vda~~e~~l~Rri~Rd~ 191 (818)
...+|+|+..... ..+. ...-..||++++.+++++|...|..
T Consensus 309 -----------g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 309 -----------GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp -----------TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred -----------CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 1236777775433 1111 1223679999999999999988875
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.14 E-value=1.6e-06 Score=88.01 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
++..+|+|+||+||||||+++.|+..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4457899999999999999999998775
No 174
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.14 E-value=5.4e-06 Score=82.31 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=27.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES 550 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l---g~~vis~Dd 550 (818)
+|+|+|++||||||+++.|++.+ |..++.++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 69999999999999999999998 888876654
No 175
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.12 E-value=4.7e-06 Score=84.57 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=33.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.|+|.|++||||||+|+.|++.+|..++++|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~ 37 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRA 37 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence 478999999999999999999999999999998875
No 176
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.11 E-value=2.2e-06 Score=87.14 Aligned_cols=113 Identities=18% Similarity=0.102 Sum_probs=67.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceecccccCCCCCcccHHHHHHHHHh-hhcCCccccccchhhhhccccc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRVGVDEGNDLDSIDFDALVQNLQD-LTEGKDTLIPMFDYQQKNRIGS 142 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~-l~~~~~i~~p~~d~~~~~~~~~ 142 (818)
+|.|.||+||||+|.|+.|++.+|+++|+++++.+.......+ +-..+.. +..|+-+.-.........+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~-------lg~~~~~~~~~G~lvpd~iv~~lv~~~l-- 72 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTP-------LGKKAKEYMERGELVPDDLIIALIEEVF-- 72 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCH-------HHHHHHHHHHHTCCCCHHHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcCh-------hhhhHHHHHhcCCcCCHHHHHHHHHHhh--
Confidence 6789999999999999999999999999999987642211110 1111111 12232211111111111111
Q ss_pred cccccCCccEEEEEecccch-------hhh---hcCCCEEEEEEcCHHHHHHHHHHhc
Q 003460 143 KVIKGASSGVVIVDGTYALD-------ARL---RSLLDIRVAVVGGVHFSLISKVQYD 190 (818)
Q Consensus 143 ~~~~~~~~~vVIvEG~~l~~-------~~l---~~~~D~~I~Vda~~e~~l~Rri~Rd 190 (818)
....-+|+||.=--. ..+ .-..|.+|+++++.++.+.|...|.
T Consensus 73 -----~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 73 -----PKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp -----CSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred -----ccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 112248899962211 111 1246899999999999999998885
No 177
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.10 E-value=9.3e-06 Score=85.03 Aligned_cols=35 Identities=37% Similarity=0.478 Sum_probs=32.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy 552 (818)
.+|.|+||+||||||+|+.|+..++..++++|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 47899999999999999999999999999999974
No 178
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.08 E-value=1.7e-06 Score=88.40 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=36.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.++.+|.|.|++||||||+++.|++.++...+++|++++.
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~ 42 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRA 42 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 3567889999999999999999999999999999998875
No 179
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.08 E-value=2.4e-06 Score=99.36 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=69.2
Q ss_pred HHHHHHHHHH-hcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceecccccCCCCCcccHHHHHHHHHhh
Q 003460 48 LVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDL 121 (818)
Q Consensus 48 l~~~i~~~~~-~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l 121 (818)
+.+.+..... +...+.+|.++|++||||||+|+.|++.++ +.+++.|.+.+.+.... .|....-...+..+
T Consensus 357 V~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~---~f~~~er~~~l~~i 433 (546)
T 2gks_A 357 VAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGL---GFSKEDRITNILRV 433 (546)
T ss_dssp HHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTC---CSSHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccc---cccHHHHHHHHHHH
Confidence 4444444332 223468899999999999999999999886 47888888755442211 11111111111111
Q ss_pred hcCCccccccchhhhhccccccccccCCccEEEEEecccch---hhhhcCC---C-EEEEEEcCHHHHHHHH
Q 003460 122 TEGKDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD---ARLRSLL---D-IRVAVVGGVHFSLISK 186 (818)
Q Consensus 122 ~~~~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~---~~l~~~~---D-~~I~Vda~~e~~l~Rr 186 (818)
.. ...... .....||+++..++. ..++..+ | ..|||+++.+++.+|.
T Consensus 434 ~~----------------~~~~~l--~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl 487 (546)
T 2gks_A 434 GF----------------VASEIV--KHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERD 487 (546)
T ss_dssp HH----------------HHHHHH--HTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHC
T ss_pred HH----------------HHHHHH--hCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHh
Confidence 00 000011 123478899877654 2334443 7 8899999999987774
No 180
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.06 E-value=4.5e-06 Score=89.21 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=35.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh--CCeEEeccceecc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI--GCTLISMENYRVG 99 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L--g~~vI~~D~~~~~ 99 (818)
..+.+|.|+|+|||||||+|+.|++.+ +..+||+|.++..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~ 72 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 72 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHh
Confidence 457899999999999999999999988 7889999988653
No 181
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.06 E-value=1.1e-05 Score=82.70 Aligned_cols=124 Identities=10% Similarity=0.026 Sum_probs=72.2
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccc
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFD 592 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD 592 (818)
+..++.||.|.||+||||||.|+.|++.+|...||+.|.++.+-... + ++..+.-.-+.+|+-+.--...
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~-------t---~lg~~~~~~~~~G~lVpde~~~ 94 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSG-------S---PKGKELKAMMERGELVPLEVVL 94 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTC-------C---HHHHHHHHHHHHTCCCCHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcC-------C---chHHHHHHHHhcCCCCCHHHHH
Confidence 44678899999999999999999999999999999999987532110 0 0111111112233322111100
Q ss_pred ccccccCCCcceeeecCCcEEEEEecccch---Hhhh---hcCCEEEEEEcChhHHHHHHHhcC
Q 003460 593 LETGARSGFKELEVSEDCGVIIFEGVYALH---PEIR---KSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 593 ~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~---~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
....++. ........-+|++|.=--. ..+. ...|..|+++++.++...|...|.
T Consensus 95 ~lv~~~l----~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~ 154 (217)
T 3umf_A 95 ALLKEAM----IKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRA 154 (217)
T ss_dssp HHHHHHH----HHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC-
T ss_pred HHHHHHH----hhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhccc
Confidence 0000000 0001122457888853211 1122 236799999999999998887774
No 182
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.05 E-value=5.4e-06 Score=82.36 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.+|+|.||+||||||+++.|...+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999998753
No 183
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.03 E-value=8.4e-06 Score=83.98 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=36.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
..+..|.|.|++||||||+|+.|++.+++.++++|++.+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~ 53 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRA 53 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 3567899999999999999999999999999999998764
No 184
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.03 E-value=4.7e-06 Score=87.31 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=33.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.+|+|+|++||||||+++.|+..+|..++++|+++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~ 85 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQ 85 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHH
Confidence 3688999999999999999999999999999998764
No 185
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.02 E-value=8.6e-06 Score=85.12 Aligned_cols=40 Identities=23% Similarity=0.397 Sum_probs=34.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC--CeEEeccceecc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVG 99 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~~~~~ 99 (818)
..+.+|.|+|++||||||+|+.|++.++ +.+++.|.+...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQ 71 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHh
Confidence 4578999999999999999999999986 678899988653
No 186
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.00 E-value=2.2e-05 Score=79.02 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=29.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf 551 (818)
.++.+|+|+|++||||||+++.|++.++...++.|.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 3577899999999999999999999886555555443
No 187
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.00 E-value=7e-06 Score=87.61 Aligned_cols=114 Identities=12% Similarity=-0.021 Sum_probs=65.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh-CCcccccccccchhhhhcccCCCcccccH--HH-HHHHHHHHhcCCceeccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLESYFKSEQVKDFKYDDFSSLDL--SL-LSKNISDIRNGRRTKVPIFD 592 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Ddfy~~~~~~~~~~d~p~t~D~--~l-l~~~L~~L~~g~~v~~P~yD 592 (818)
|.+|.|+|++||||||+|+.|++.+ |..++++|.+.........++ .+.++. +. ..+.+..+.. +
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~------~--- 70 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERD--EYKYTKKKEGIVTGMQFDTAK------S--- 70 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC-----CCHHHHHHHHHHHHHHHH------H---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCccc--ccccchhhhhHHHHHHHHHHH------H---
Confidence 5689999999999999999999975 889999996643211100011 001111 11 1111111000 0
Q ss_pred ccccccCCCcceeeecCCcEEEEEecccch---Hhhhhc-----C-CEEEEEEcChhHHHHHHHhcCc
Q 003460 593 LETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKS-----L-DLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 593 ~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~~-----~-D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
..........+|++|..... ..+.+. . +..||++++.++.+.|...|..
T Consensus 71 ----------~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 128 (301)
T 1ltq_A 71 ----------ILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (301)
T ss_dssp ----------HTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred ----------HHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence 00000223578899877542 223221 2 3789999999999999888763
No 188
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.00 E-value=1.1e-05 Score=83.19 Aligned_cols=120 Identities=12% Similarity=0.133 Sum_probs=68.4
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHH-HhcCCceeccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISD-IRNGRRTKVPIFDLE 594 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~-L~~g~~v~~P~yD~~ 594 (818)
...-.||.|++||||||+|+.|++.+|+.+||+||..+..-... + ++ -+.+.. +.+|+.+.-......
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~-------t---~l-G~~i~~~~~~G~lvpdei~~~l 75 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAG-------T---PL-GVEAKTYMDEGKLVPDSLIIGL 75 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTT-------C---HH-HHHHHHHHTTTCCCCHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCC-------C---hH-HHHHHHHHhhccccccHHHHHH
Confidence 34568999999999999999999999999999999987531100 0 00 011111 112221111000000
Q ss_pred ccccCCCcceeeecCCcEEEEEecccch---Hhhhh---cCCEEEEEEcChhHHHHHHHhcCc
Q 003460 595 TGARSGFKELEVSEDCGVIIFEGVYALH---PEIRK---SLDLWIAVVGGVHSHLISRVQRDK 651 (818)
Q Consensus 595 ~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~---~~D~~I~v~~~~d~rl~Rri~Rd~ 651 (818)
..++.. ......-+|++|.---. ..+.+ ..|..|+++++.++.+.|...|..
T Consensus 76 l~~~l~-----~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~~ 133 (230)
T 3gmt_A 76 VKERLK-----EADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRRT 133 (230)
T ss_dssp HHHHHH-----SGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEEE
T ss_pred HHHHHh-----CcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCCc
Confidence 000000 00001236788853221 22332 368999999999999999998864
No 189
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.97 E-value=1.4e-05 Score=78.18 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=30.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccc--ccccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVV--SLESYFK 553 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vi--s~Ddfy~ 553 (818)
+.+|.|+|+|||||||+++.|++.++...+ +.|++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 457889999999999999999999976544 5787754
No 190
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.96 E-value=1.6e-05 Score=78.08 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=30.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---CCccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLES 550 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l---g~~vis~Dd 550 (818)
+..+|+|+|++||||||+++.|+..+ |..++.+|.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 45789999999999999999999988 877776653
No 191
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.96 E-value=2.4e-05 Score=78.32 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=25.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~ 543 (818)
++.+|.|.|++||||||+|+.|++.++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 3578999999999999999999999875
No 192
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.94 E-value=6.3e-05 Score=75.40 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=32.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh---CCc--ccccccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV---GCE--VVSLESYFK 553 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l---g~~--vis~Ddfy~ 553 (818)
..++.+|+|.|++||||||+++.|+..+ |.. .++.|++..
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 4567899999999999999999999988 544 566666643
No 193
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.93 E-value=1.3e-05 Score=81.43 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=67.8
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLETGAR 598 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~~~r 598 (818)
+|.|.||+||||||.|+.|++.+|...||+.|.++.+-... + ++..+.-.-+.+|+-+.--........+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~-------t---~lg~~~~~~~~~G~lvpd~iv~~lv~~~ 71 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKG-------T---PLGKKAKEYMERGELVPDDLIIALIEEV 71 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHT-------C---HHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhc-------C---hhhhhHHHHHhcCCcCCHHHHHHHHHHh
Confidence 57789999999999999999999999999999988532110 0 0111111112233322111100000111
Q ss_pred CCCcceeeecCCcEEEEEecccch---H----hhh---hcCCEEEEEEcChhHHHHHHHhcC
Q 003460 599 SGFKELEVSEDCGVIIFEGVYALH---P----EIR---KSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 599 ~~~~~~~~~~~~~vvIvEG~~~~~---~----~l~---~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
. ...+-+|++|.=--. . .+. -..|..|+++++.+..+.|...|.
T Consensus 72 l--------~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 72 F--------PKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp C--------CSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred h--------ccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 1 112337888864321 1 111 236899999999999999988885
No 194
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.91 E-value=3.1e-06 Score=93.99 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=37.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc--eeccccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN--YRVGVDE 102 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~--~~~~~~~ 102 (818)
+.+|+|+||+||||||||..|++.++..+|++|+ +|+++.-
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i 44 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPI 44 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceeccccc
Confidence 4689999999999999999999999999999999 6887653
No 195
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.90 E-value=5.9e-05 Score=77.72 Aligned_cols=154 Identities=12% Similarity=0.138 Sum_probs=76.8
Q ss_pred cCCcEEEEEeCCCCCcHHHHHHHHHHHhC--CeEEeccceecccccCCCCCcccHHHHHHHHHhhhcCCcccccc-----
Q 003460 59 KGGIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMENYRVGVDEGNDLDSIDFDALVQNLQDLTEGKDTLIPM----- 131 (818)
Q Consensus 59 ~~~~~iIgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~~~~~~~~~~~~~~~d~~~l~~~L~~l~~~~~i~~p~----- 131 (818)
.....+|+|.|++||||||+++.|++.++ ..++.+.. |..- .+.+.+..+........+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~----------p~~~---~~g~~i~~~~~~~~~~~~~~~~ll 89 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE----------PGGV---PTGEEIRKIVLEGNDMDIRTEAML 89 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECT----------TTTC---HHHHHHHHHTTC---CCHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecC----------CCCC---chHHHHHHHHhCCCCCCHHHHHHH
Confidence 34568899999999999999999999986 34443321 1100 0112222211111100000
Q ss_pred chhhhhcccccccc-ccCCccEEEEE----------ecc--cchh---h---h---hcCCCEEEEEEcCHHHHHHHHHHh
Q 003460 132 FDYQQKNRIGSKVI-KGASSGVVIVD----------GTY--ALDA---R---L---RSLLDIRVAVVGGVHFSLISKVQY 189 (818)
Q Consensus 132 ~d~~~~~~~~~~~~-~~~~~~vVIvE----------G~~--l~~~---~---l---~~~~D~~I~Vda~~e~~l~Rri~R 189 (818)
+............. ......+||+| |.. +-.. . + ....|++||+++|.++.+.|...|
T Consensus 90 ~~a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~~~R 169 (229)
T 4eaq_A 90 FAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN 169 (229)
T ss_dssp HHHHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 00000000000000 01134578888 541 1111 1 1 125699999999999999998888
Q ss_pred ccC-CCc--CHHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460 190 DIG-DSC--SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 190 d~~-~~~--s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
... .+. ....+.+++...|....+.. ...-++|+++
T Consensus 170 ~~~~dr~e~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~ 208 (229)
T 4eaq_A 170 SRDQNRLDQEDLKFHEKVIEGYQEIIHNE-SQRFKSVNAD 208 (229)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHTTTC-TTTEEEEETT
T ss_pred CCCccchhhhhHHHHHHHHHHHHHHHHhC-CCCEEEEeCC
Confidence 532 222 23455566666666644322 1234566765
No 196
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.90 E-value=1e-05 Score=81.94 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.++.+|+|.||+||||||+++.|+..++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3466899999999999999999998765
No 197
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.83 E-value=2.2e-05 Score=80.49 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=16.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHH-HHhC
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMA-NIVG 542 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~-~~lg 542 (818)
..+|||+||+||||||+++.|+ ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4589999999999999999999 7664
No 198
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.82 E-value=2e-05 Score=77.79 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=22.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.+|+|+||||||||||++.|...+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999998653
No 199
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.77 E-value=3.9e-05 Score=75.19 Aligned_cols=31 Identities=35% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVV 546 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vi 546 (818)
++.+|.|+|++||||||+|+.|++.++..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999999999997776
No 200
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.77 E-value=4.8e-05 Score=88.90 Aligned_cols=41 Identities=22% Similarity=0.253 Sum_probs=34.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC------CeEEeccceeccc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRVGV 100 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~~~ 100 (818)
..+.+|.|+|.+||||||+|+.|++.|+ +.+++.|.+++++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l 440 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL 440 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh
Confidence 3468999999999999999999999886 3567788876654
No 201
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.77 E-value=3.9e-05 Score=90.06 Aligned_cols=34 Identities=29% Similarity=0.422 Sum_probs=30.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh---CCeEEecc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI---GCTLISME 94 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~D 94 (818)
++.+|.|+|.+||||||+|+.|++.| |..++++|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 56899999999999999999999999 87776665
No 202
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.75 E-value=7.8e-05 Score=75.19 Aligned_cols=146 Identities=14% Similarity=0.130 Sum_probs=78.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC---CeEEeccceec-ccccCCC--CCcc---------cHHHHHHHHHhhhcC
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG---CTLISMENYRV-GVDEGND--LDSI---------DFDALVQNLQDLTEG 124 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg---~~vI~~D~~~~-~~~~~~~--~~~~---------d~~~l~~~L~~l~~~ 124 (818)
..+.+|+|+|.+||||+|+|+.|.+.+| +.++++.+--+ .+..... .+.+ -...+...-..++..
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~ 88 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQA 88 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999999885 77889877433 2211111 1110 001111111111111
Q ss_pred CccccccchhhhhccccccccccCCccEEEEEecccch--hhhhcCCC---EEEEEEcCHHHHHHHHHHhccCCCcCHHH
Q 003460 125 KDTLIPMFDYQQKNRIGSKVIKGASSGVVIVDGTYALD--ARLRSLLD---IRVAVVGGVHFSLISKVQYDIGDSCSLDS 199 (818)
Q Consensus 125 ~~i~~p~~d~~~~~~~~~~~~~~~~~~vVIvEG~~l~~--~~l~~~~D---~~I~Vda~~e~~l~Rri~Rd~~~~~s~e~ 199 (818)
++- .+-... .......++||+|.--.. ..++..+. ..|.|.++.++|.+|...+... ..+
T Consensus 89 d~~---~~~~~~--------~~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~~~-~Dd--- 153 (202)
T 3ch4_B 89 DPG---FFCRKI--------VEGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPG-VDD--- 153 (202)
T ss_dssp CTT---TTHHHH--------SBTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCCTT-TTT---
T ss_pred Cch---HHHHHH--------HHhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhcccc-ccc---
Confidence 110 000000 011123489999997765 34444332 3689999999998884221110 111
Q ss_pred HHHhhchhhhhccCCccccCcEEEECCC
Q 003460 200 LIDSIFPLFRKHIEPDLHHAQIRINNRF 227 (818)
Q Consensus 200 ~~~~~~p~~~~~Iep~~~~ADiII~N~~ 227 (818)
..-+.-+... ..+|++|.|+-
T Consensus 154 ------~esE~gL~~~-~~~D~vI~Ndg 174 (202)
T 3ch4_B 154 ------AESECGLDNF-GDFDWVIENHG 174 (202)
T ss_dssp ------SHHHHTTTTC-CCCSEEEEECS
T ss_pred ------cccccCCCCC-CcCCEEEEeCC
Confidence 1112333344 68999999985
No 203
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.74 E-value=0.00021 Score=73.49 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=25.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
....+|.|.|++||||||+++.|++.++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3568899999999999999999999986
No 204
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.73 E-value=5.8e-05 Score=84.79 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=34.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf 551 (818)
..|.+|.|+|++||||||+|+.|++.+++.+++.|++
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 4577899999999999999999999999999999987
No 205
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.72 E-value=9.7e-05 Score=73.76 Aligned_cols=22 Identities=45% Similarity=0.741 Sum_probs=20.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q 003460 65 VGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 65 IgI~G~sGSGKSTlA~~La~~L 86 (818)
|.|+||||||||||++.|.+.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7799999999999999998765
No 206
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.67 E-value=6.2e-05 Score=78.56 Aligned_cols=40 Identities=23% Similarity=0.400 Sum_probs=33.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC--Ccccccccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLESYFK 553 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg--~~vis~Ddfy~ 553 (818)
...|.+|.|+|++||||||+|+.|+..++ ..+++.|.+..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRS 70 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHH
Confidence 44678999999999999999999999986 56677887743
No 207
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.65 E-value=1.4e-05 Score=78.90 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
.+|+|+||||||||||++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5899999999999999999988653
No 208
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.65 E-value=8.3e-05 Score=73.54 Aligned_cols=37 Identities=24% Similarity=0.303 Sum_probs=31.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCC-eEEeccceecc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGC-TLISMENYRVG 99 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~-~vI~~D~~~~~ 99 (818)
.+|+|+|++||||||+++.|+..++. ..++.|++...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~ 40 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHM 40 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhh
Confidence 47999999999999999999987765 77898887653
No 209
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.61 E-value=1.3e-05 Score=82.96 Aligned_cols=48 Identities=10% Similarity=-0.000 Sum_probs=33.8
Q ss_pred cCCEEEEEEcChhHHHHHHHhcCccccCcccchhhHHHhhcchhhhhccc
Q 003460 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQNDIMMTVFPMFQQHIEP 677 (818)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~~~~~~~v~p~~~~~I~p 677 (818)
..|+.||++++.+..+.|...|.... .......+...+...|..+..+
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~--e~~~~~~~~~~v~~~y~~~~~~ 196 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREE--EKGIELAYLEQLHGQHEAWLIH 196 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTT--TTTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcc--cccCCHHHHHHHHHHHHHHHhh
Confidence 57999999999999999987664211 1111135677788888887664
No 210
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.61 E-value=1.7e-05 Score=77.18 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=33.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
+.+|+|+|++||||||+++.|+..++..+++.|++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHH
Confidence 3579999999999999999999999999999888765
No 211
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.60 E-value=0.00016 Score=72.13 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=63.0
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCC-cccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecccccccc-cc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLET-GA 597 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~-~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~~-~~ 597 (818)
|.|+||||||||||++.|.+.+.- ..++.=.--++...++.+-.+-.-.+.+.+. ..+.+|+-++.-.|.-.. |.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~---~~i~~g~flE~~~~~g~~YGt 80 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFK---SMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH---HHHHTTCEEEEEEETTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHH---HHHHcCCEEEEEEEcCceeee
Confidence 446999999999999999876531 1111111111111111111111112222222 334556656554443211 11
Q ss_pred cCCCcce-eeecCCcEEEEEecccchHhhhhcC---CEEEEEEcChhHHHHHHHhc
Q 003460 598 RSGFKEL-EVSEDCGVIIFEGVYALHPEIRKSL---DLWIAVVGGVHSHLISRVQR 649 (818)
Q Consensus 598 r~~~~~~-~~~~~~~vvIvEG~~~~~~~l~~~~---D~~I~v~~~~d~rl~Rri~R 649 (818)
.. ... ........+|+++-..+...++..+ -..||+..|.-..|.+|+..
T Consensus 81 ~~--~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~ 134 (186)
T 1ex7_A 81 TV--ASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEG 134 (186)
T ss_dssp EH--HHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHH
T ss_pred ec--ceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHh
Confidence 00 001 1122357888888766666666543 26789988887777777654
No 212
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.58 E-value=1.2e-05 Score=80.93 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=22.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
+|+|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999884
No 213
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=97.57 E-value=0.00017 Score=72.71 Aligned_cols=118 Identities=13% Similarity=0.119 Sum_probs=68.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC---CcccccccccchhhhhcccCCCc---------ccccHHHHHHHHHHHhc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG---CEVVSLESYFKSEQVKDFKYDDF---------SSLDLSLLSKNISDIRN 582 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg---~~vis~Ddfy~~~~~~~~~~d~p---------~t~D~~ll~~~L~~L~~ 582 (818)
.++.||+|+|.+||||+|+|+.|.+.+| +.+++|-|--+.......+.+.. +.+ ...+...-..+++
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~-R~~m~~~g~~~R~ 87 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAF-RKDMIRWGEEKRQ 87 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSH-HHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHH-HHHHHHHHHHHHh
Confidence 4678999999999999999999999885 67888888665322222111100 011 1112211122221
Q ss_pred -CCceecccccccccccCCCcceeeecCCcEEEEEecccch--HhhhhcCC---EEEEEEcChhHHHHHH
Q 003460 583 -GRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYALH--PEIRKSLD---LWIAVVGGVHSHLISR 646 (818)
Q Consensus 583 -g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~--~~l~~~~D---~~I~v~~~~d~rl~Rr 646 (818)
+..+ |-..... ....+++||+|+--.+ ..++..+. ..|.|.++.++|.+|.
T Consensus 88 ~d~~~----~~~~~~~---------~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 88 ADPGF----FCRKIVE---------GISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp HCTTT----THHHHSB---------TCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTT
T ss_pred cCchH----HHHHHHH---------hcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHh
Confidence 1110 0000000 0123689999999876 34555442 4689999999999984
No 214
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.49 E-value=0.00013 Score=73.74 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhC------Cccccccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVG------CEVVSLESYF 552 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg------~~vis~Ddfy 552 (818)
...+.+|.|.|++||||||+++.|+..++ +.+++.|++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 34577899999999999999999999875 5566656553
No 215
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.43 E-value=0.00038 Score=80.39 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=34.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccceeccc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENYRVGV 100 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~~~~~ 100 (818)
..+.+|.++|.+||||||+|+.|++.|+ +.+++.|++....
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~ 78 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREA 78 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHh
Confidence 4568899999999999999999999884 4568999976543
No 216
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.42 E-value=0.00018 Score=83.50 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=61.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----CcccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceecc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVP 589 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P 589 (818)
..+.+|.++|++||||||+|+.|++.++ +.+++.|.+...- .+...|.. -+.. ..+..+.. +..
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l-~~~~~f~~---~er~---~~l~~i~~---~~~- 438 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHL-SRGLGFSK---EDRI---TNILRVGF---VAS- 438 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHT-CTTCCSSH---HHHH---HHHHHHHH---HHH-
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhh-cccccccH---HHHH---HHHHHHHH---HHH-
Confidence 4578999999999999999999999875 3566666542210 01111111 1111 11111110 000
Q ss_pred cccccccccCCCcceeeecCCcEEEEEecccch---HhhhhcC---C-EEEEEEcChhHHHHHHH
Q 003460 590 IFDLETGARSGFKELEVSEDCGVIIFEGVYALH---PEIRKSL---D-LWIAVVGGVHSHLISRV 647 (818)
Q Consensus 590 ~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~~~---~~l~~~~---D-~~I~v~~~~d~rl~Rri 647 (818)
. .......+|+++..++. ..+++.+ | ..||++++.++++.|..
T Consensus 439 -------------~--~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 439 -------------E--IVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp -------------H--HHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCGGGHHHHCC
T ss_pred -------------H--HHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCHHHHHHHhh
Confidence 0 01123578888766543 2344444 6 89999999999988853
No 217
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.41 E-value=0.00014 Score=77.44 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=35.4
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh--CCcccccccccch
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV--GCEVVSLESYFKS 554 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l--g~~vis~Ddfy~~ 554 (818)
...|.+|.|+|+|||||||+|+.|++.+ +..+||.|.|...
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~ 72 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 72 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHh
Confidence 3467899999999999999999999988 6788899888643
No 218
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.41 E-value=0.00025 Score=69.94 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=29.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESY 551 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddf 551 (818)
.++.+|.|.|++||||||+++.|+..++ +.+++.|.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 3568899999999999999999999874 234555554
No 219
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.35 E-value=0.001 Score=67.99 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=24.4
Q ss_pred HHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 54 ELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 54 ~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
.+....+...+++|.||+|||||||.+.|+..+.
T Consensus 8 ~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 8 HHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cccccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3334456667999999999999999999988764
No 220
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.34 E-value=0.00019 Score=83.28 Aligned_cols=39 Identities=36% Similarity=0.345 Sum_probs=32.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhC------CeEEeccceec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIG------CTLISMENYRV 98 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg------~~vI~~D~~~~ 98 (818)
.+..+|+|+|++||||||+++.|+..++ +.+++.|++..
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 4568899999999999999999999884 34588888754
No 221
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.34 E-value=9.1e-05 Score=79.63 Aligned_cols=38 Identities=32% Similarity=0.473 Sum_probs=34.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cch
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf--y~~ 554 (818)
+.+|.|+||+||||||||..|++.++..+||.|.+ |+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~ 42 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRG 42 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceee
Confidence 56789999999999999999999999999999998 764
No 222
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.29 E-value=0.0014 Score=67.45 Aligned_cols=47 Identities=6% Similarity=-0.076 Sum_probs=33.8
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCCc-CHHHHHHhhchhhhhccCC
Q 003460 168 LLDIRVAVVGGVHFSLISKVQYDIGDSC-SLDSLIDSIFPLFRKHIEP 214 (818)
Q Consensus 168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~~-s~e~~~~~~~p~~~~~Iep 214 (818)
..|.+||++++.++++.|...|...... ...++..++...|..++.+
T Consensus 149 ~pd~~i~l~~~~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~ 196 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIH 196 (241)
T ss_dssp CCCEEEEEECCHHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCHHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhh
Confidence 5799999999999999998877643222 1245566677777776654
No 223
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.27 E-value=0.00012 Score=73.08 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=29.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEeccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI-GCTLISMEN 95 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~~D~ 95 (818)
++.+|+|+|++||||||+++.|++.+ |..+++++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 35689999999999999999999998 577777654
No 224
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.27 E-value=0.00014 Score=74.94 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=36.0
Q ss_pred cCCCEEEEEEcCHHHHHHHHHHhccCCCcC--HHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460 167 SLLDIRVAVVGGVHFSLISKVQYDIGDSCS--LDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 167 ~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s--~e~~~~~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
...|++||+++|+++.+.|...|....+.. ..++.+++...|..+.+.. ...-++|+.+
T Consensus 150 ~~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~ 210 (227)
T 3v9p_A 150 FQPDLTVLFDVPPQIASARRGAVRMPDKFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSS 210 (227)
T ss_dssp CCCSEEEEEECCSSCGGGTTTCCCCC---CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCC
Confidence 347999999999999988887775323322 2456666666666644211 1224566655
No 225
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.25 E-value=0.00015 Score=77.79 Aligned_cols=40 Identities=38% Similarity=0.625 Sum_probs=35.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc--cch
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY--FKS 554 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf--y~~ 554 (818)
..|.+|.|+||+||||||||..|++.++..+||.|++ |+.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~ 49 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKG 49 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccccc
Confidence 4567899999999999999999999999999999985 654
No 226
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.24 E-value=0.00014 Score=80.87 Aligned_cols=38 Identities=29% Similarity=0.515 Sum_probs=34.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccccc--ccch
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLES--YFKS 554 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Dd--fy~~ 554 (818)
+.+|+|+||+||||||||..|++.++..+||+|+ +|+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~ 41 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKD 41 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSS
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecc
Confidence 4678999999999999999999999999999999 6765
No 227
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.22 E-value=0.00014 Score=78.64 Aligned_cols=35 Identities=37% Similarity=0.672 Sum_probs=33.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf 551 (818)
+.+|.|+||+||||||+|..|++.++..++++|++
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 46899999999999999999999999999999997
No 228
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.21 E-value=0.00055 Score=80.31 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=30.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---CCcccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV---GCEVVSLE 549 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l---g~~vis~D 549 (818)
++.+|.|+|.+||||||+|+.|++.| |..++.+|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 67899999999999999999999998 87777776
No 229
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.15 E-value=0.00077 Score=67.69 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=25.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh---CCeEEec
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI---GCTLISM 93 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L---g~~vI~~ 93 (818)
.|.|-|+-||||||.++.|++.| |..++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 58899999999999999999987 5666543
No 230
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.15 E-value=0.00047 Score=70.74 Aligned_cols=29 Identities=31% Similarity=0.408 Sum_probs=25.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~ 88 (818)
.+..+|.|.|++||||||+++.|++.|+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45688999999999999999999997753
No 231
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.13 E-value=0.00068 Score=70.20 Aligned_cols=57 Identities=11% Similarity=-0.052 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCCc--CHHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460 168 LLDIRVAVVGGVHFSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~~--s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
..|++||+++|+++.++|...|....+. ...++.+++...|..+.+... . .++|+++
T Consensus 154 ~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~la~~~~-~-~~vIDa~ 212 (236)
T 3lv8_A 154 KPDLTLYLDIDPKLGLERARGRGELDRIEKMDISFFERARERYLELANSDD-S-VVMIDAA 212 (236)
T ss_dssp CCSEEEEEECCHHHHHHC-----CCCTTTTSCHHHHHHHHHHHHHHHHHCT-T-EEEEETT
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHHHCC-C-EEEEeCC
Confidence 5799999999999999998888543331 123555555555555432111 1 5677766
No 232
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.12 E-value=0.00017 Score=78.27 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESY 551 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddf 551 (818)
++.+|.|+||+|||||||+..|++.++..+||.|.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 456889999999999999999999999999999988
No 233
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.11 E-value=0.0002 Score=74.19 Aligned_cols=38 Identities=26% Similarity=0.460 Sum_probs=34.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccceec
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENYRV 98 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~~~ 98 (818)
++.+|+|.|++||||||+++.|++.+|...++.|++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~ 63 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLR 63 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHH
Confidence 46789999999999999999999999998888888644
No 234
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.11 E-value=0.002 Score=65.48 Aligned_cols=59 Identities=7% Similarity=-0.008 Sum_probs=36.4
Q ss_pred cCCCEEEEEEcCHHHHHHHHHHhccCCCcC--HHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460 167 SLLDIRVAVVGGVHFSLISKVQYDIGDSCS--LDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 167 ~~~D~~I~Vda~~e~~l~Rri~Rd~~~~~s--~e~~~~~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
...|++||+++|+++.+.|...|....+.. ..++.+++...|....+.. ...-++|+.+
T Consensus 130 ~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~ 190 (213)
T 4edh_A 130 LRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAG 190 (213)
T ss_dssp CCCSEEEEEECCHHHHHHHHCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHhcCCcCcccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 347999999999999999988775323321 2345555555565543211 1234666665
No 235
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.08 E-value=0.00022 Score=70.28 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=31.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC--eEEeccceec
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGC--TLISMENYRV 98 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~--~vI~~D~~~~ 98 (818)
...+|+|.|++||||||+++.|+..++. ..++.|++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 4578999999999999999999987653 4678887644
No 236
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.07 E-value=0.0002 Score=74.11 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=34.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
+|.+|+|.|++||||||+++.|++.+|...++.|++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 477999999999999999999999999888888877654
No 237
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.03 E-value=0.0038 Score=63.51 Aligned_cols=57 Identities=9% Similarity=-0.044 Sum_probs=36.8
Q ss_pred CCCEEEEEEcCHHHHHHHHHHhccCCCc--CHHHHHHhhchhhhhccCCccccCcEEEECC
Q 003460 168 LLDIRVAVVGGVHFSLISKVQYDIGDSC--SLDSLIDSIFPLFRKHIEPDLHHAQIRINNR 226 (818)
Q Consensus 168 ~~D~~I~Vda~~e~~l~Rri~Rd~~~~~--s~e~~~~~~~p~~~~~Iep~~~~ADiII~N~ 226 (818)
..|++||+++|+++.+.|...|....+. ...++.+++...|..+.+.. ..-++|+.+
T Consensus 132 ~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~~~~~f~~rv~~~y~~la~~~--~~~~vIDa~ 190 (213)
T 4tmk_A 132 RPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQD--KSIHTIDAT 190 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHSSCCTTTTSCHHHHHHHHHHHHHHHHTC--TTEEEEETT
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHC--CcEEEECCC
Confidence 5699999999999999999888543331 12345666666666654221 123555554
No 238
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.03 E-value=0.00023 Score=70.94 Aligned_cols=35 Identities=17% Similarity=0.206 Sum_probs=29.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-CCccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVSLES 550 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis~Dd 550 (818)
++.+|+|.|++||||||+++.|++.+ |..+++++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 45689999999999999999999988 566776654
No 239
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.95 E-value=0.0024 Score=64.56 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=24.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh--CCeEE
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI--GCTLI 91 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L--g~~vI 91 (818)
..|.|-|+.||||||.++.|++.| |..++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~ 33 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVI 33 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 468999999999999999999988 44444
No 240
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.92 E-value=0.00043 Score=71.08 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=70.5
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCC----cccc-c---ccccchhhhhcccCCCcccccHH------------HH
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGC----EVVS-L---ESYFKSEQVKDFKYDDFSSLDLS------------LL 573 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~----~vis-~---Ddfy~~~~~~~~~~d~p~t~D~~------------ll 573 (818)
..++.+|.+.|++||||||+++.|++.++. .++. + ++--..+..+++-.+... ++.. .+
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~-~~~~~e~llf~a~R~~~~ 96 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQG-LDSLSELLFFIAMRREHF 96 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSS-CCHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999998753 3322 1 000000001111001111 2211 11
Q ss_pred HHHHH-HHhcCCceecccccccccccCCCcceeeecCCcEEEEEeccc-chHhhh-hcCCEEEEEEcChhHHHHHHHhcC
Q 003460 574 SKNIS-DIRNGRRTKVPIFDLETGARSGFKELEVSEDCGVIIFEGVYA-LHPEIR-KSLDLWIAVVGGVHSHLISRVQRD 650 (818)
Q Consensus 574 ~~~L~-~L~~g~~v~~P~yD~~~~~r~~~~~~~~~~~~~vvIvEG~~~-~~~~l~-~~~D~~I~v~~~~d~rl~Rri~Rd 650 (818)
.+.+. .|.+|..|-.-+|-.+.--..+.. ...+ ..|+. ++.... ...|++||++++.++.+.|. .||
T Consensus 97 ~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~-----~g~~----~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri-~rd 166 (223)
T 3ld9_A 97 VKIIKPSLMQKKIVICDRFIDSTIAYQGYG-----QGID----CSLIDQLNDLVIDVYPDITFIIDVDINESLSRS-CKN 166 (223)
T ss_dssp HHTHHHHHHTTCEEEEESCHHHHHHHHTTT-----TCCC----HHHHHHHHHHHCSSCCSEEEEEECC------------
T ss_pred HHHHHHHHhcCCeEEEccchhhHHHhcccc-----CCcc----HHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHh-ccC
Confidence 12121 345666665555554431110000 0000 00111 111111 35799999999999999987 444
Q ss_pred ccccCcccchhhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 651 KSRMGCFMSQNDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 651 ~~~rg~~~~~~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
.-+. +...|...++..|..+.... ....++|+++
T Consensus 167 r~E~----~~~e~~~rv~~~y~~la~~~-~~~~~vIDa~ 200 (223)
T 3ld9_A 167 GYEF----ADMEFYYRVRDGFYDIAKKN-PHRCHVITDK 200 (223)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHC-TTTEEEEESS
T ss_pred cccc----chHHHHHHHHHHHHHHHHHC-CCCEEEEcCC
Confidence 2211 11356677777777765433 2356788875
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.91 E-value=0.00032 Score=69.15 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=30.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCC--ccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGC--EVVSLESYF 552 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~--~vis~Ddfy 552 (818)
....+|+|.|++||||||+++.|+..++. ..++.|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 34578999999999999999999886543 356667664
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.91 E-value=0.0027 Score=63.50 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=22.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
.+++|.||+|||||||.+.|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4789999999999999999988653
No 243
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.91 E-value=0.00092 Score=69.20 Aligned_cols=57 Identities=9% Similarity=-0.074 Sum_probs=33.7
Q ss_pred cCCEEEEEEcChhHHHHHHHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
..|++||+++|.++.+.|...|... ...+. ..|...++..|..+..... . .++|+++
T Consensus 154 ~PDlvi~Ldv~~e~~~~Ri~~R~~~---dr~E~~~~~~~~rv~~~y~~la~~~~-~-~~vIDa~ 212 (236)
T 3lv8_A 154 KPDLTLYLDIDPKLGLERARGRGEL---DRIEKMDISFFERARERYLELANSDD-S-VVMIDAA 212 (236)
T ss_dssp CCSEEEEEECCHHHHHHC-----CC---CTTTTSCHHHHHHHHHHHHHHHHHCT-T-EEEEETT
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCc---chhhhhHHHHHHHHHHHHHHHHHHCC-C-EEEEeCC
Confidence 4799999999999999998877421 11221 3566677777776654221 2 5677764
No 244
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.90 E-value=0.00049 Score=71.45 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=31.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
|.+|||+|++||||||+|+.|++.+|+.+++..+
T Consensus 1 m~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~ 34 (241)
T 1dek_A 1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAG 34 (241)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCeEEecCh
Confidence 4789999999999999999999989999988765
No 245
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.79 E-value=0.00048 Score=67.98 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=29.9
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC-cccccccccc
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFK 553 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~-~vis~Ddfy~ 553 (818)
.+|+|.|++||||||+++.|+..++. ..++.|++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 47899999999999999999987754 5677777754
No 246
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.76 E-value=0.0011 Score=77.52 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=30.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC----C--cccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG----C--EVVSLESYFK 553 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg----~--~vis~Ddfy~ 553 (818)
..+.+|.|+|.+||||||+|+.|++.|+ . .+++.|.+..
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 4578999999999999999999999875 2 4555565443
No 247
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.71 E-value=0.0025 Score=64.05 Aligned_cols=120 Identities=9% Similarity=0.091 Sum_probs=58.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC-cccccccccchhhhhcccCCCcccccHHHHHHHHHHHhcCCceeccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC-EVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNISDIRNGRRTKVPIFDLE 594 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~-~vis~Ddfy~~~~~~~~~~d~p~t~D~~ll~~~L~~L~~g~~v~~P~yD~~ 594 (818)
...+|+|+||||||||||++.|...+.. ...+.-.--++...++.+-.+..-.+.+.+.+.+ ..+.-+..-.|.-.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i---~~~~fle~~~~~~n 94 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNI---SANEFLEFGSYQGN 94 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHH---HTTCEEEEEEETTE
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhh---hhhhhhhhhhhhce
Confidence 3457889999999999999999987641 1111110001011111111111223444444433 34443433322111
Q ss_pred c-cccCCCcceeeecCCcEEEEEecccchHhhhhc-CC-EEEEEEcCh
Q 003460 595 T-GARSGFKELEVSEDCGVIIFEGVYALHPEIRKS-LD-LWIAVVGGV 639 (818)
Q Consensus 595 ~-~~r~~~~~~~~~~~~~vvIvEG~~~~~~~l~~~-~D-~~I~v~~~~ 639 (818)
. +.... ..........++|+|.-.-+-..++.. .+ ..|||..|.
T Consensus 95 ~YGt~~~-~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps 141 (197)
T 3ney_A 95 MFGTKFE-TVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTD 141 (197)
T ss_dssp EEEEEHH-HHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECC
T ss_pred ecccchh-hHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCC
Confidence 1 11000 001123456889999866665555543 23 788998664
No 248
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.65 E-value=0.0016 Score=74.82 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=36.0
Q ss_pred HHHHHHHHHH-hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC-------eEEeccc
Q 003460 48 LVKSIQELRE-KKGGIVTVGIGGPSGSGKTSLAEKLASVIGC-------TLISMEN 95 (818)
Q Consensus 48 l~~~i~~~~~-~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~-------~vI~~D~ 95 (818)
+.+.+..... +.....+|.++|.+||||||+|+.|++.|+. .+++.|.
T Consensus 380 V~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 380 VVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp HHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred hHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 4444444432 2335589999999999999999999999985 5677776
No 249
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.55 E-value=0.0071 Score=68.76 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=27.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
..+.+|.++|.+||||||+++.|++.++...+++|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~ 72 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTRE 72 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceE
Confidence 456899999999999999999999987633333333
No 250
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.49 E-value=0.0032 Score=67.23 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=29.5
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D 94 (818)
..+..|.|.|++|+||||+|+.++..++..++..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 34567899999999999999999999987776544
No 251
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.45 E-value=0.0018 Score=64.99 Aligned_cols=38 Identities=29% Similarity=0.176 Sum_probs=32.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce--eccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY--RVGV 100 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~--~~~~ 100 (818)
...|.|+|++||||||+|..|++..+ .+|+.|.. |+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~ 73 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQD 73 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecC
Confidence 35689999999999999999998766 99999985 5543
No 252
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.44 E-value=0.0037 Score=63.16 Aligned_cols=46 Identities=13% Similarity=0.081 Sum_probs=29.8
Q ss_pred CCEEEEEEcChhHHHHHHHhcCccccCcccc--hhhHHHhhcchhhhhcc
Q 003460 629 LDLWIAVVGGVHSHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIE 676 (818)
Q Consensus 629 ~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~--~~~~~~~v~p~~~~~I~ 676 (818)
-|++||+++|+++.+.|...|.... + ..+ ...|...++..|.++..
T Consensus 125 PDl~i~Ld~~~e~~~~Ri~~r~~~~-d-r~e~~~~~f~~~v~~~Y~~l~~ 172 (205)
T 4hlc_A 125 PDLTIYLNVSAEVGRERIIKNSRDQ-N-RLDQEDLKFHEKVIEGYQEIIH 172 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEeeeCCCHHHHHHHHHhcCCcc-c-chhccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999987664211 1 122 13566777778877654
No 253
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.37 E-value=0.0016 Score=67.47 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=32.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCCcccccccccch
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKS 554 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~~ 554 (818)
.+|||+|++||||||+|+.|++.+|+.++++.+-.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~ 38 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKD 38 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHH
Confidence 5899999999999999999999899888887665443
No 254
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.35 E-value=0.0043 Score=64.03 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=26.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~ 92 (818)
+.-|.|.|++|+|||++|+.++..++..++.
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4558899999999999999999999876543
No 255
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.34 E-value=0.0043 Score=64.25 Aligned_cols=32 Identities=31% Similarity=0.436 Sum_probs=27.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
+.-|.|.|++|+||||+|+.++..++.+++..
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 34588999999999999999999998765544
No 256
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.33 E-value=0.0065 Score=68.17 Aligned_cols=60 Identities=23% Similarity=0.335 Sum_probs=43.7
Q ss_pred Ccccccch--hhHHHHHHHHHHHH----------h--cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 36 PVHASFDH--GYYLLVKSIQELRE----------K--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 36 ~~~~s~~~--~~~~l~~~i~~~~~----------~--~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
...++|++ |+....+.+.+... . .+.+.=|.+.||+|+|||++|+++|..+|+.++..+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34578988 66666665544331 1 1345669999999999999999999999988765543
No 257
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.32 E-value=0.0029 Score=72.59 Aligned_cols=59 Identities=5% Similarity=0.109 Sum_probs=41.4
Q ss_pred ccCCCCcchhhhhHHHHHHHHHHHH-cCCCCEEEeeeCCCCccHHHHHHHHHHHhCC-------ccccccc
Q 003460 488 VPMPDSYDFDRGLLLSVQAIQALLE-NKGLPVIVGIGGPSGSGKTSLAHKMANIVGC-------EVVSLES 550 (818)
Q Consensus 488 ~~~~~~~~~~e~~~~~~~~i~~l~~-~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~-------~vis~Dd 550 (818)
...|+++...|.. ..+++... +.....+|.++|.+||||||+|+.|++.|+. .+++.|+
T Consensus 369 ~~~P~~f~rpeV~----~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 369 GEIPEWFSYPEVV----KILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCCCTTTSCHHHH----HHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred CCCCccccChhhH----HHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5567888766552 22333221 2335688999999999999999999999985 4555555
No 258
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.32 E-value=0.0043 Score=65.11 Aligned_cols=34 Identities=32% Similarity=0.430 Sum_probs=28.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
..+.-|.|.|++|+||||+|+.++..++..++..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v 82 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRV 82 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 3455689999999999999999999998776543
No 259
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0075 Score=67.02 Aligned_cols=59 Identities=31% Similarity=0.450 Sum_probs=43.9
Q ss_pred cccccch--hhHHHHHHHHHHHH----------h--cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 37 VHASFDH--GYYLLVKSIQELRE----------K--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 37 ~~~s~~~--~~~~l~~~i~~~~~----------~--~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
..++|++ |+....+.+++... . .+.+.=|.+.||+|+|||++|+++|..+|++++..+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 4588998 66666666644332 1 1345668999999999999999999999988765543
No 260
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.15 E-value=0.0023 Score=63.08 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=22.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.++|.||+|||||||.+.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999886
No 261
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.14 E-value=0.0093 Score=66.64 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=44.7
Q ss_pred Ccccccch--hhHHHHHHHHHHHHh------------cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 36 PVHASFDH--GYYLLVKSIQELREK------------KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 36 ~~~~s~~~--~~~~l~~~i~~~~~~------------~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
...++|++ |+....+.+++...- .+.+.=|.+.||+|+|||++|+++|..+|+.++..+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~ 249 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG 249 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEH
Confidence 45688998 666666666544321 1345679999999999999999999999988765543
No 262
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.008 Score=67.55 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=44.0
Q ss_pred Ccccccch--hhHHHHHHHHHHHH------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 36 PVHASFDH--GYYLLVKSIQELRE------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 36 ~~~~s~~~--~~~~l~~~i~~~~~------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
...++|++ |.....+.+.+... ..+.+.=|.+.||+|+|||++|+++|..+|++++..+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 34678998 66666666544321 11346679999999999999999999999988765543
No 263
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0076 Score=67.80 Aligned_cols=59 Identities=31% Similarity=0.396 Sum_probs=42.9
Q ss_pred Ccccccch--hhHHHHHHHHHHHH------------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460 36 PVHASFDH--GYYLLVKSIQELRE------------KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (818)
Q Consensus 36 ~~~~s~~~--~~~~l~~~i~~~~~------------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D 94 (818)
...++|++ |+....+.+..... .-+.+.=|.+.||+|+|||++|+++|..+|+.++..+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~ 247 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSP 247 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 34678988 56666555544331 1134567999999999999999999999998876543
No 264
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.02 E-value=0.0031 Score=62.21 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=23.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGC 88 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~ 88 (818)
.++|.|++|||||||.+.|+..+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998873
No 265
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.01 E-value=0.0078 Score=63.56 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
.+.-|.|.|++|+||||+|+.++..++..++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 346789999999999999999999998766543
No 266
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.00 E-value=0.0015 Score=65.35 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=22.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
+|+|.|++||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999885
No 267
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.97 E-value=0.0022 Score=66.99 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=28.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEe
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLIS 92 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~ 92 (818)
.++.+|+|.|++||||||+++.|++.+ ++.++.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 467899999999999999999999998 566664
No 268
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.97 E-value=0.0036 Score=61.38 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
.+.+|+|+|++||||||++..|...+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999999876
No 269
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.93 E-value=0.0037 Score=62.76 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
--+++|.||+|||||||++.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35799999999999999999998774
No 270
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.92 E-value=0.0032 Score=63.24 Aligned_cols=36 Identities=22% Similarity=0.162 Sum_probs=30.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
...|.|+||+||||||+|..|++... .+++.|....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 45688999999999999999998766 8999987644
No 271
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.91 E-value=0.0027 Score=61.83 Aligned_cols=34 Identities=32% Similarity=0.344 Sum_probs=27.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (818)
..-+++|.|++||||||+++.+. .|..+++.|.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~ 41 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFC 41 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHH
Confidence 45689999999999999999863 35667777764
No 272
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.90 E-value=0.0041 Score=60.90 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.+.+|+|+|++||||||++..|+..|
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999998876
No 273
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.89 E-value=0.0041 Score=62.43 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
.-+++|.|++||||||+++.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999998774
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.86 E-value=0.0033 Score=62.84 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.+++|.||+|||||||.+.|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4688999999999999999988653
No 275
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.85 E-value=0.01 Score=63.77 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=39.3
Q ss_pred ccccch--hhHHHHHHHHHHHH-----------hcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 38 HASFDH--GYYLLVKSIQELRE-----------KKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 38 ~~s~~~--~~~~l~~~i~~~~~-----------~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
.++|++ +.....+.+..... ....+.-|.|.|++|+|||++|+.++..++..++..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 456776 55555555544331 112245699999999999999999999999876544
No 276
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.84 E-value=0.0041 Score=66.16 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=30.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D 549 (818)
.+.|..+.+.||+|+|||++|+.+++.+|..++.++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 346788999999999999999999999997766544
No 277
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.012 Score=66.27 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=43.4
Q ss_pred cccccch--hhHHHHHHHHHHHH----------h--cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460 37 VHASFDH--GYYLLVKSIQELRE----------K--KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (818)
Q Consensus 37 ~~~s~~~--~~~~l~~~i~~~~~----------~--~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D 94 (818)
..++|++ |+....+.+++... . -+.+.=|.+.||+|+|||++|+++|..+|+.++..+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs 275 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVI 275 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEE
Confidence 3588988 66666666654321 1 145667899999999999999999999998876554
No 278
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.79 E-value=0.0092 Score=61.57 Aligned_cols=29 Identities=38% Similarity=0.518 Sum_probs=25.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 65 VGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
|+|.|++||||||+++.++..++...+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 89999999999999999999887655443
No 279
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.77 E-value=0.0042 Score=60.53 Aligned_cols=32 Identities=38% Similarity=0.414 Sum_probs=23.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D 549 (818)
+.-+++|.|++|||||||++.+. .+..+++.|
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d 39 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSD 39 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCeEEccH
Confidence 45689999999999999999743 234444444
No 280
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.71 E-value=0.0042 Score=63.07 Aligned_cols=26 Identities=38% Similarity=0.427 Sum_probs=22.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
...+++|.||+|||||||++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34578999999999999999999866
No 281
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.71 E-value=0.0052 Score=62.72 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.-.+++|.||||||||||.+.|...+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 445789999999999999999998764
No 282
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.68 E-value=0.0044 Score=62.91 Aligned_cols=26 Identities=42% Similarity=0.597 Sum_probs=23.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
...+++|.||+|||||||++.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34579999999999999999999876
No 283
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.65 E-value=0.0058 Score=61.35 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
..+|+|+||||||||||++.|.+.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988764
No 284
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.64 E-value=0.0053 Score=65.30 Aligned_cols=34 Identities=29% Similarity=0.336 Sum_probs=28.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
+.+..+.+.||+|+|||++|+.+|+.+|..++..
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v 67 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM 67 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4567888999999999999999999999766544
No 285
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.64 E-value=0.015 Score=62.71 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=37.2
Q ss_pred ccccch--hhHHHHHHHHHHHH-----------hcCCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEe
Q 003460 38 HASFDH--GYYLLVKSIQELRE-----------KKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLIS 92 (818)
Q Consensus 38 ~~s~~~--~~~~l~~~i~~~~~-----------~~~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~ 92 (818)
.++|++ +.....+.++.... ....+.-|.|.||+|+|||++|+.++..+ +..++.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 466777 44555555543331 01234568899999999999999999988 665543
No 286
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.62 E-value=0.014 Score=64.35 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=32.1
Q ss_pred HHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460 52 IQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (818)
Q Consensus 52 i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~ 92 (818)
+....-.-+...+|+|.|++||||||+++.|+..++..++.
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 33333344566799999999999999999999988877665
No 287
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.61 E-value=0.0048 Score=71.15 Aligned_cols=39 Identities=21% Similarity=0.428 Sum_probs=31.9
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC-----Ccccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG-----CEVVSLESYFK 553 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg-----~~vis~Ddfy~ 553 (818)
..+.+|.++|.+||||||+|+.|+..++ +.+++.|++-.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 4578899999999999999999999884 34577888543
No 288
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.58 E-value=0.0066 Score=58.67 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=24.1
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
..--+++|.||+|||||||.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445689999999999999999999877
No 289
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.57 E-value=0.016 Score=56.34 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=27.6
Q ss_pred HHHHHHHHHcCC--CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 504 VQAIQALLENKG--LPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 504 ~~~i~~l~~~~~--~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
+..++....+.. ....++|.||+||||||+++.++..+
T Consensus 23 ~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 23 LLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 344444444332 34678999999999999999999866
No 290
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.56 E-value=0.017 Score=55.60 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
+..|.|.|++|+||||+++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4457899999999999999999876
No 291
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.56 E-value=0.0031 Score=65.82 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=27.8
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh-CCcccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIV-GCEVVS 547 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~l-g~~vis 547 (818)
.++.+|.|.|++||||||+++.|++.+ +..+++
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 467899999999999999999999988 555553
No 292
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.53 E-value=0.017 Score=62.13 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=28.2
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
.....|.|.|++|+|||++|+.++..++..++..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 4445689999999999999999999998765543
No 293
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.50 E-value=0.014 Score=64.56 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=31.6
Q ss_pred HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460 507 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (818)
Q Consensus 507 i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis 547 (818)
++.....-....+|+|.||+||||||+++.|+..++..+++
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 33333355566789999999999999999999988755554
No 294
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.49 E-value=0.0089 Score=62.99 Aligned_cols=30 Identities=43% Similarity=0.656 Sum_probs=26.1
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460 65 VGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (818)
Q Consensus 65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~D 94 (818)
|+|.||+||||||+++.|+..++...+..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~ 76 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVK 76 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999999999887655443
No 295
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.47 E-value=0.008 Score=58.09 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=24.3
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
+..-+++|.|+.|||||||.+.|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455789999999999999999999876
No 296
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.45 E-value=0.011 Score=62.99 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=29.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D 549 (818)
..+..|.|.||+|+||||+|+.++..++...++.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 45667889999999999999999999987666544
No 297
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.45 E-value=0.019 Score=60.18 Aligned_cols=29 Identities=38% Similarity=0.518 Sum_probs=25.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 65 VGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 65 IgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
|+|.|++||||||+++.++..++...+..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 89999999999999999999887555443
No 298
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.44 E-value=0.0069 Score=60.32 Aligned_cols=32 Identities=38% Similarity=0.790 Sum_probs=26.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh---CCcccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV---GCEVVSLESYFK 553 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l---g~~vis~Ddfy~ 553 (818)
+|+|.|++||||||+.+.|+..+ | +..|.|+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G---i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG---VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT---CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC---EEEcCEec
Confidence 58999999999999999999876 4 55666554
No 299
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.41 E-value=0.004 Score=61.06 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.+|+|+|++|||||||++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
No 300
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.41 E-value=0.014 Score=62.40 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=40.3
Q ss_pred ccch--hhHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460 40 SFDH--GYYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (818)
Q Consensus 40 s~~~--~~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D 94 (818)
+|++ +....++.+....+....+..+.+.|++|+||||+++.+++.++..++..+
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred CHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 4555 444556666665565555667889999999999999999999987665444
No 301
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.40 E-value=0.018 Score=63.00 Aligned_cols=32 Identities=34% Similarity=0.447 Sum_probs=27.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~ 92 (818)
.+.-|.|.|++|+|||++|+.++..+++.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 45678999999999999999999999877653
No 302
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.40 E-value=0.016 Score=55.83 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
...|.|.|++|+||||+++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4456899999999999999999877
No 303
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.38 E-value=0.02 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
...++|.|++||||||+++.++..+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998866
No 304
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.36 E-value=0.0084 Score=64.31 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=23.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
++-+|+|.||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56799999999999999999999876
No 305
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.36 E-value=0.0078 Score=63.44 Aligned_cols=30 Identities=43% Similarity=0.655 Sum_probs=25.5
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~D 549 (818)
|+|.||+|||||||++.|+..++...+..+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~ 76 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVK 76 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 899999999999999999998876554443
No 306
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.36 E-value=0.019 Score=57.97 Aligned_cols=45 Identities=18% Similarity=0.356 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460 504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (818)
Q Consensus 504 ~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~ 548 (818)
+..++......++..-+.|.||+|+||||+|..|++.++-.+++.
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f 89 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF 89 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE
Confidence 445555555543344588999999999999999999886555543
No 307
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.36 E-value=0.0091 Score=58.70 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.+.+|+|+|++||||||+++.|...+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998765
No 308
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.35 E-value=0.016 Score=62.78 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=26.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCCeE
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGCTL 90 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~~v 90 (818)
.+-.++|.||+|+||||+++.++..+|+.+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 345689999999999999999999998754
No 309
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.34 E-value=0.0092 Score=56.93 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=22.9
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
....++|.|++||||||+++.++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999876
No 310
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.33 E-value=0.025 Score=59.00 Aligned_cols=34 Identities=38% Similarity=0.534 Sum_probs=28.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
..+.-|.|.|++|+|||++|+.++..++.+++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4567899999999999999999999998765543
No 311
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.33 E-value=0.015 Score=62.20 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460 504 VQAIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (818)
Q Consensus 504 ~~~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~ 548 (818)
+..++........|.++.+.||+|+||||+++.+++.++..++.+
T Consensus 35 ~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i 79 (324)
T 3u61_B 35 KETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFV 79 (324)
T ss_dssp HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 344445555556667788899999999999999999987555443
No 312
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.32 E-value=0.022 Score=62.27 Aligned_cols=39 Identities=28% Similarity=0.531 Sum_probs=31.1
Q ss_pred HhcCCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccc
Q 003460 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMEN 95 (818)
Q Consensus 57 ~~~~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~ 95 (818)
...++..+|+|+|.+|+||||++..|+..+ | +.+++.|.
T Consensus 74 ~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 74 PDSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp GGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred hhcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 344677899999999999999999998876 3 45677764
No 313
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.31 E-value=0.018 Score=58.15 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEe
Q 003460 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLIS 92 (818)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~ 92 (818)
.+..++...+..++...+.|.||+|+||||+|..|+..++..+++
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 455555555555555569999999999999999999988655544
No 314
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.30 E-value=0.0055 Score=60.05 Aligned_cols=24 Identities=46% Similarity=0.664 Sum_probs=21.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
.+|+|.|+||||||||++.|...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998876
No 315
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.27 E-value=0.016 Score=62.03 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.+.+|+|.|++||||||+++.|+..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999876
No 316
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.26 E-value=0.011 Score=64.05 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=25.3
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
.+++.+|+|.||+||||||+++.|+..+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999999876
No 317
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.25 E-value=0.016 Score=62.83 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=24.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
+++.+|+|.|++||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999876
No 318
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.24 E-value=0.0071 Score=62.32 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=21.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999987654
No 319
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.24 E-value=0.013 Score=62.72 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=23.6
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
++.+|+|.|++||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999876
No 320
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.24 E-value=0.013 Score=62.82 Aligned_cols=37 Identities=30% Similarity=0.505 Sum_probs=30.0
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEecccee
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (818)
.+.+|+|+|++||||||++..|+..+ | +.+++.|-+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 46799999999999999999999876 3 4556777653
No 321
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.21 E-value=0.01 Score=58.27 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
..+|+|+|++||||||+++.|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998765
No 322
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.21 E-value=0.017 Score=62.18 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=27.7
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D 549 (818)
..+.-|.|.|++|+||||+|+.++..++..++..+
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~ 87 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTA 87 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEec
Confidence 34445788999999999999999999886654433
No 323
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.21 E-value=0.02 Score=57.13 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
.++.+.........+..+.|.|++|+||||+++.+++.++
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444444444444445789999999999999999998774
No 324
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.21 E-value=0.011 Score=61.07 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=26.5
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~ 548 (818)
|.-|.|.||+|+||||+|+.++..++..++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 44578999999999999999999988665443
No 325
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.20 E-value=0.011 Score=63.39 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
+.+.+|+|+|++||||||++..|+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 357899999999999999999999876
No 326
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.20 E-value=0.022 Score=56.75 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 511 LENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 511 ~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
......+..+.|.|++|+||||+++.+++.++
T Consensus 39 l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 39 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444455788999999999999999998775
No 327
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.17 E-value=0.019 Score=56.81 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=21.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
.-|.|.|++|+||||+|+.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999876
No 328
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.15 E-value=0.02 Score=55.07 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.2
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
.+..|.|.|++|+||||+++.+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34456789999999999999999876
No 329
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.15 E-value=0.0065 Score=63.15 Aligned_cols=30 Identities=40% Similarity=0.530 Sum_probs=25.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
-|.|.|++|+|||++|+.++..++.+++..
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 378999999999999999999988665443
No 330
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.14 E-value=0.01 Score=62.15 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
.--+|+|+||+||||||+.+.|...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 44689999999999999999998765
No 331
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.09 E-value=0.0089 Score=61.60 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.-++||.|++|||||||.+.|+..+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3579999999999999999997654
No 332
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.07 E-value=0.019 Score=62.85 Aligned_cols=31 Identities=32% Similarity=0.512 Sum_probs=26.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
.-|.|.|++|+|||++|+.++..++..++..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 4588899999999999999999999876544
No 333
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.05 E-value=0.015 Score=60.98 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
...-+|+|+||+||||||+.+.|+..+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 445689999999999999999998765
No 334
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.05 E-value=0.008 Score=59.45 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeE
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTL 90 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~v 90 (818)
+|.|+|++||||||+|..|+.. |.++
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 3789999999999999999876 6443
No 335
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.04 E-value=0.0058 Score=60.45 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.4
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEV 545 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~v 545 (818)
+|.|+|++||||||+|..|+.. +..+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 3678999999999999999865 5443
No 336
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.03 E-value=0.01 Score=60.48 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHH
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMA 538 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~ 538 (818)
--+++|.||+|||||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999988
No 337
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.03 E-value=0.025 Score=60.66 Aligned_cols=35 Identities=20% Similarity=0.361 Sum_probs=28.1
Q ss_pred HhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (818)
Q Consensus 57 ~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI 91 (818)
-.-++.-+++|.|++|||||||++.|+..+.-.|+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~ 155 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL 155 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence 34456678999999999999999999987754443
No 338
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.01 E-value=0.02 Score=61.86 Aligned_cols=30 Identities=37% Similarity=0.483 Sum_probs=25.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCE 544 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~ 544 (818)
..+-.+++.||+|+||||+++.++..+++.
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~ 78 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTN 78 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 344568899999999999999999998754
No 339
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.01 E-value=0.014 Score=62.59 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=24.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
++-+|+|.|++||||||+++.|+..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999999876
No 340
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.00 E-value=0.02 Score=62.54 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=28.5
Q ss_pred HHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 507 IQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 507 i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
++.+....+++.+|+|+|.+|+||||++..|+..+
T Consensus 69 ~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 69 LLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 33443455678999999999999999999999876
No 341
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.98 E-value=0.011 Score=59.40 Aligned_cols=26 Identities=46% Similarity=0.586 Sum_probs=22.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
.--+++|.||+|||||||++.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998743
No 342
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.97 E-value=0.026 Score=60.42 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
...+.|.|++|+||||+++.++..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4568899999999999999999877
No 343
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.95 E-value=0.0086 Score=61.20 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999987654
No 344
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.95 E-value=0.022 Score=65.45 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=28.6
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D 94 (818)
+..+.|.|++|+||||+|+.+++.+|+.++..+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 357899999999999999999999998776543
No 345
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.95 E-value=0.024 Score=54.41 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.8
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
+.-|.|.|++|+||||+|+.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4456789999999999999999877
No 346
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.94 E-value=0.011 Score=61.03 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998754
No 347
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.93 E-value=0.022 Score=62.39 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=23.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.+.+|+|.|++||||||+++.|+..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 46799999999999999999999876
No 348
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.92 E-value=0.014 Score=65.58 Aligned_cols=38 Identities=34% Similarity=0.475 Sum_probs=31.3
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESYFK 553 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddfy~ 553 (818)
+|.+|.++|++||||||++..|+..+ | +.++++|-|.-
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 58999999999999999999999876 2 45677776543
No 349
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.91 E-value=0.014 Score=65.60 Aligned_cols=36 Identities=42% Similarity=0.643 Sum_probs=29.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh---C--Ccccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV---G--CEVVSLESY 551 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l---g--~~vis~Ddf 551 (818)
+|.+|+++|++||||||++..|+..+ | +.+++.|-|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 58899999999999999999999877 2 445667654
No 350
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.90 E-value=0.013 Score=58.42 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L 86 (818)
+|+|.|++||||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999999876
No 351
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.90 E-value=0.01 Score=56.62 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
.-.++|.|++|||||||++.++..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999876
No 352
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.90 E-value=0.015 Score=59.87 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=26.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis 547 (818)
.+.-|.|.||+|+||||+|+.++..++..++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34557799999999999999999998866543
No 353
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.90 E-value=0.013 Score=60.47 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=24.6
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~ 548 (818)
|+|.||+||||||+++.++..++...+..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~ 80 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITA 80 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 88999999999999999999887554443
No 354
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.88 E-value=0.019 Score=62.97 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-+|+|+||+||||||+.+.|...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 389999999999999999998765
No 355
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.87 E-value=0.01 Score=62.70 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 379999999999999999997655
No 356
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.87 E-value=0.03 Score=55.22 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
..+.+.........+ .+.|.|++|+||||+++.+++.+
T Consensus 25 ~~~~l~~~l~~~~~~-~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 25 VIQRLKGYVERKNIP-HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp HHHHHHHHHHTTCCC-CEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 444444444433322 28999999999999999999876
No 357
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.86 E-value=0.027 Score=56.69 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC-----CeEEeccce
Q 003460 47 LLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG-----CTLISMENY 96 (818)
Q Consensus 47 ~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg-----~~vI~~D~~ 96 (818)
..++.+....... ....|.|.|++|+||||+++.++..++ +..++.+++
T Consensus 38 ~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 38 ELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp HHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred HHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3444554444432 456688999999999999999998764 244555554
No 358
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.86 E-value=0.013 Score=58.89 Aligned_cols=25 Identities=40% Similarity=0.429 Sum_probs=22.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASV 85 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~ 85 (818)
..-+++|.|++|||||||++.|+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999874
No 359
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.85 E-value=0.022 Score=59.60 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=27.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis 547 (818)
..+.-|.|.||+|+||||+|+.++..++..++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 345567889999999999999999999866543
No 360
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.84 E-value=0.011 Score=62.24 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=21.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999997654
No 361
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.83 E-value=0.011 Score=67.23 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=31.0
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhCCccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYF 552 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy 552 (818)
+.+.+|.+.|.+||||||+++.|+..++...++.|.|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 45788999999999999999999998875556666554
No 362
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.83 E-value=0.014 Score=59.59 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCCcHHHHHHHHH
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLA 83 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La 83 (818)
.-+++|.|++|||||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 363
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.82 E-value=0.021 Score=64.32 Aligned_cols=38 Identities=29% Similarity=0.409 Sum_probs=31.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccceec
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYRV 98 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~~ 98 (818)
++.+|+++|++||||||++..|+..+ | +.++++|.|+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 47899999999999999999999866 3 55688887644
No 364
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.81 E-value=0.011 Score=60.51 Aligned_cols=24 Identities=42% Similarity=0.394 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
-++||.|++|||||||.+.|+..+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999997654
No 365
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.80 E-value=0.014 Score=60.35 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
-++||.|++|||||||.+.|+..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998755
No 366
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.78 E-value=0.036 Score=62.51 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=38.7
Q ss_pred cccccch--hhHHHHHHHHHHHH-----------hcCCcEEEEEeCCCCCcHHHHHHHHHHHh-CCeEEe
Q 003460 37 VHASFDH--GYYLLVKSIQELRE-----------KKGGIVTVGIGGPSGSGKTSLAEKLASVI-GCTLIS 92 (818)
Q Consensus 37 ~~~s~~~--~~~~l~~~i~~~~~-----------~~~~~~iIgI~G~sGSGKSTlA~~La~~L-g~~vI~ 92 (818)
..++|++ +.....+.+..... ....+.-|.|.||+|+|||++|+.++..+ +..++.
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~ 198 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 198 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE
Confidence 3567887 55555555544331 12234568899999999999999999988 665543
No 367
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.77 E-value=0.028 Score=59.23 Aligned_cols=35 Identities=29% Similarity=0.523 Sum_probs=28.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEE--eccce
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLI--SMENY 96 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI--~~D~~ 96 (818)
+.-|.|.|++|+|||++|+.+++.++..++ ++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 445779999999999999999999987654 44443
No 368
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.77 E-value=0.035 Score=54.71 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.5
Q ss_pred EeeeCCCCccHHHHHHHHHHHh
Q 003460 520 VGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~l 541 (818)
+.|.|++|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999876
No 369
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.77 E-value=0.012 Score=60.81 Aligned_cols=24 Identities=29% Similarity=0.482 Sum_probs=21.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999987654
No 370
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.77 E-value=0.018 Score=62.96 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=28.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
+.-|.+.||+|+|||++|+.+++.++.+++..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 4568899999999999999999999987765543
No 371
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.74 E-value=0.0081 Score=69.67 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=29.5
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHhC------Ccccccccc
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIVG------CEVVSLESY 551 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~lg------~~vis~Ddf 551 (818)
.+..+|+|+|++||||||+++.|+..++ +.++..|++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 3567899999999999999999999884 224566655
No 372
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.72 E-value=0.019 Score=63.03 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=24.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
++-+|+|.|++||||||+++.|+..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 57899999999999999999999876
No 373
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.71 E-value=0.011 Score=59.74 Aligned_cols=23 Identities=52% Similarity=0.427 Sum_probs=20.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHH
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANI 540 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~ 540 (818)
-+++|.||+|||||||.+.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999875
No 374
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.71 E-value=0.045 Score=57.02 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=28.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~ 548 (818)
...+.-|.|.||+|+|||++|+.++..++..++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34567788999999999999999999988765543
No 375
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.71 E-value=0.017 Score=60.94 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=26.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis 547 (818)
.+.-|.|.||+|+||||+|+.++..++..++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 35568899999999999999999998866543
No 376
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.70 E-value=0.012 Score=61.63 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999987654
No 377
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.70 E-value=0.013 Score=61.90 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
-++||.|++|||||||.+.|+..+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999997755
No 378
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.68 E-value=0.013 Score=61.52 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.-++||.|++|||||||.+.|+..+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3479999999999999999997654
No 379
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.68 E-value=0.015 Score=60.52 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEeeeCCCCccHHHHHHHHHHH
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANI 540 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~ 540 (818)
-++||.|++|||||||.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999864
No 380
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.68 E-value=0.015 Score=58.87 Aligned_cols=23 Identities=48% Similarity=0.364 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHH
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASV 85 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~ 85 (818)
-+++|.|++|||||||.+.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 381
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.68 E-value=0.037 Score=61.04 Aligned_cols=57 Identities=28% Similarity=0.392 Sum_probs=39.6
Q ss_pred ccccch--hhHHHHHHHHHHHHh-----------cCCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460 38 HASFDH--GYYLLVKSIQELREK-----------KGGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (818)
Q Consensus 38 ~~s~~~--~~~~l~~~i~~~~~~-----------~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D 94 (818)
.++|++ +.....+.+...... ...+.-|.|.|++|+|||++|+.++..++..++..+
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 456777 555555555443311 123457899999999999999999999998776443
No 382
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.66 E-value=0.022 Score=64.04 Aligned_cols=37 Identities=38% Similarity=0.475 Sum_probs=30.7
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEecccee
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENYR 97 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~~ 97 (818)
++.+|+++|++||||||++..|+..+ | +.++++|-|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 47899999999999999999999876 3 4567888653
No 383
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.66 E-value=0.026 Score=60.49 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=25.3
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.-++--+|+|.||+|||||||++.|...+.
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 444556899999999999999999998774
No 384
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.65 E-value=0.013 Score=60.87 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=21.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999987654
No 385
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.63 E-value=0.014 Score=60.23 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.-+++|.|++|||||||.+.|+..+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999997644
No 386
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.62 E-value=0.013 Score=60.57 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=21.9
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
--+++|.||+|||||||.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998654
No 387
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.59 E-value=0.018 Score=60.68 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
+.|+|.|++|||||||.+.|+...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999998865
No 388
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.59 E-value=0.014 Score=60.37 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999987654
No 389
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.57 E-value=0.014 Score=61.01 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999987654
No 390
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.55 E-value=0.045 Score=62.29 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=26.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
.-|.|.||+|+||||+|+.++..++++++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 3488999999999999999999999876544
No 391
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.55 E-value=0.015 Score=60.94 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
..-++||.|++|||||||.+.|+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999997654
No 392
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.54 E-value=0.018 Score=60.64 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=22.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
+.|||.|++|||||||.+.|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999999865
No 393
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.54 E-value=0.028 Score=60.68 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=29.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh---C--CeEEeccce
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI---G--CTLISMENY 96 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L---g--~~vI~~D~~ 96 (818)
.++.+|+|+|++||||||++..|+..+ | +.+++.|-+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 346799999999999999999999876 3 456677754
No 394
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.53 E-value=0.03 Score=63.77 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
....+|+|.|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 346799999999999999999999876
No 395
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.53 E-value=0.014 Score=61.22 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 479999999999999999987654
No 396
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.52 E-value=0.014 Score=59.75 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-+++|.||+|||||||.+.|+..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999997655
No 397
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.51 E-value=0.029 Score=67.73 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=41.5
Q ss_pred Ccccccch--hhHHHHHHHHHHH----Hhc--------CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 36 PVHASFDH--GYYLLVKSIQELR----EKK--------GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 36 ~~~~s~~~--~~~~l~~~i~~~~----~~~--------~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
...++|++ |+....+.+++.. ..+ ..+.=|.+.||+|+|||++|+.+|..+|+.++..+.
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence 34577887 4444444443322 111 345679999999999999999999999988776543
No 398
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.51 E-value=0.018 Score=59.87 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHH
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASV 85 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~ 85 (818)
-+++|.|++|||||||.+.|+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999764
No 399
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.51 E-value=0.033 Score=56.00 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=22.8
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.+..|.|.||+|+||||+++.++..++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345577899999999999999998764
No 400
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.50 E-value=0.016 Score=60.00 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=23.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
+..-+++|.|++|||||||.+.|+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344689999999999999999998754
No 401
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.50 E-value=0.018 Score=60.34 Aligned_cols=29 Identities=34% Similarity=0.475 Sum_probs=24.7
Q ss_pred EeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460 520 VGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (818)
Q Consensus 520 IgIsG~sGSGKTTla~~L~~~lg~~vis~ 548 (818)
|+|.||+||||||+++.|+..++...+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~ 104 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITA 104 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEe
Confidence 88999999999999999999887554443
No 402
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.50 E-value=0.015 Score=60.27 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
-++||.|++|||||||.+.|+..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999997654
No 403
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.50 E-value=0.016 Score=60.10 Aligned_cols=32 Identities=38% Similarity=0.465 Sum_probs=26.1
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~ 548 (818)
+.-|.|.||+|+||||+|+.++..++..++.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 33377899999999999999999988665543
No 404
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.49 E-value=0.025 Score=55.49 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=28.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccce
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVIGCTLISMENY 96 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~~ 96 (818)
.-|.|+|+||+||||+|..|.+ -|..+++-|..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v 49 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID-RGHQLVCDDVI 49 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEE
Confidence 3489999999999999999987 48888877765
No 405
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.49 E-value=0.012 Score=59.68 Aligned_cols=23 Identities=35% Similarity=0.709 Sum_probs=20.5
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l 541 (818)
+++|.||+|||||||.+.|+..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999987654
No 406
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.48 E-value=0.017 Score=60.66 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.8
Q ss_pred EEEeeeCCCCccHHHHHHHHHHH
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANI 540 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~ 540 (818)
-++||.||+|||||||.+.|+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 407
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.45 E-value=0.015 Score=60.73 Aligned_cols=24 Identities=33% Similarity=0.690 Sum_probs=21.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999997654
No 408
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.42 E-value=0.016 Score=59.74 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.-+++|.|++|||||||.+.|+..+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999997654
No 409
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.40 E-value=0.03 Score=59.91 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
.-+.|.||+|+||||+++.++..+
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 346679999999999999999877
No 410
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.40 E-value=0.016 Score=60.67 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999987644
No 411
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.40 E-value=0.017 Score=60.34 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.-++||.|++|||||||.+.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999997654
No 412
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.39 E-value=0.016 Score=61.06 Aligned_cols=24 Identities=33% Similarity=0.660 Sum_probs=21.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-+++|.||+|||||||.+.|+..+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999987654
No 413
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.39 E-value=0.017 Score=59.13 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
-+++|.|++|||||||.+.|+..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999997654
No 414
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.37 E-value=0.017 Score=60.55 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=22.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
..-++||.|++|||||||.+.|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 34579999999999999999998755
No 415
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.37 E-value=0.045 Score=59.09 Aligned_cols=36 Identities=28% Similarity=0.451 Sum_probs=26.1
Q ss_pred HHHHHHHcCCCCEEEeeeCCCCccHHHHHHHHHHHhC
Q 003460 506 AIQALLENKGLPVIVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 506 ~i~~l~~~~~~p~iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
.+........-|. +.+.||+|+||||+++.++..+.
T Consensus 36 ~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 36 TVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 3333333433344 78899999999999999999764
No 416
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.35 E-value=0.024 Score=60.52 Aligned_cols=36 Identities=28% Similarity=0.428 Sum_probs=29.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh----C--CeEEeccce
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI----G--CTLISMENY 96 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L----g--~~vI~~D~~ 96 (818)
++.+|+++|++||||||++..|+..+ | +.+++.|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 45689999999999999999999765 4 456777765
No 417
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.35 E-value=0.02 Score=60.04 Aligned_cols=25 Identities=40% Similarity=0.503 Sum_probs=21.8
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHH
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASV 85 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~ 85 (818)
..-+++|.|++|||||||.+.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999764
No 418
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.34 E-value=0.026 Score=57.20 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=37.2
Q ss_pred cCCEEEEEEcChhHHHHHHHhcCccccCcccch--hhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMSQ--NDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~~--~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
..|+.||+++|.++.+.|...|... ...+. ..|...++..|..+.... ....++|+.+
T Consensus 131 ~PDlvi~Ld~~~e~~~~Ri~~R~~~---dr~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~ 190 (213)
T 4edh_A 131 RPDLTLVFDLPVEIGLARAAARGRL---DRFEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAG 190 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHCCCSSC---CTTTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCc---CcccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 4699999999999999998877421 11221 356667777777664322 1234666654
No 419
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.34 E-value=0.015 Score=59.04 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
-+++|.|++|||||||.+.|+..+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999997654
No 420
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.34 E-value=0.047 Score=53.95 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
..|.|.|++|+||||+|+.++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999876
No 421
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.31 E-value=0.044 Score=62.64 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=28.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEec
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISM 93 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~ 93 (818)
..+.-|.|.|++|+|||++|+.++..++.+++..
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~v 269 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4456689999999999999999999998776543
No 422
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.31 E-value=0.017 Score=60.64 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999987654
No 423
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.31 E-value=0.023 Score=56.99 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.7
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
--+++|.|++|||||||++.++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998644
No 424
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.30 E-value=0.021 Score=62.55 Aligned_cols=28 Identities=46% Similarity=0.526 Sum_probs=24.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCe
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCT 89 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~ 89 (818)
...++|.|++|||||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4679999999999999999999987654
No 425
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.30 E-value=0.018 Score=60.08 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.-++||.|++|||||||.+.|+..+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999997754
No 426
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.29 E-value=0.025 Score=64.38 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
+.+.+|+|.|++||||||+++.|+..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 357899999999999999999999876
No 427
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.28 E-value=0.017 Score=60.03 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=21.1
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-+++|.||+|||||||.+.|+..+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999987654
No 428
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.25 E-value=0.017 Score=61.03 Aligned_cols=24 Identities=25% Similarity=0.209 Sum_probs=21.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999997654
No 429
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.25 E-value=0.044 Score=58.23 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=26.8
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEE
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLI 91 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI 91 (818)
..+..|.|.|++|+||||+|+.++..++..++
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34456889999999999999999998886553
No 430
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.25 E-value=0.019 Score=60.11 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.-+++|.|++|||||||.+.|+..+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999997654
No 431
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.24 E-value=0.027 Score=63.39 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=29.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEeccc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISMEN 95 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D~ 95 (818)
+.-|.+.||+|+||||+|+.||..+++.++..|.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 3458899999999999999999999988877664
No 432
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.24 E-value=0.02 Score=58.76 Aligned_cols=58 Identities=7% Similarity=-0.034 Sum_probs=36.9
Q ss_pred cCCEEEEEEcChhHHHHHHHhcCccccCcccc--hhhHHHhhcchhhhhccccCCcccEEEeCC
Q 003460 628 SLDLWIAVVGGVHSHLISRVQRDKSRMGCFMS--QNDIMMTVFPMFQQHIEPHLVHAHLKIRND 689 (818)
Q Consensus 628 ~~D~~I~v~~~~d~rl~Rri~Rd~~~rg~~~~--~~~~~~~v~p~~~~~I~p~~~~ADivI~n~ 689 (818)
..|+.||+++|.++.+.|...|.. ....+ ...|...++..|..+.... ...-++|+.+
T Consensus 151 ~PDl~I~Ldv~~e~~~~Ri~~R~~---~dr~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~ 210 (227)
T 3v9p_A 151 QPDLTVLFDVPPQIASARRGAVRM---PDKFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSS 210 (227)
T ss_dssp CCSEEEEEECCSSCGGGTTTCCCC---C---CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETT
T ss_pred CCCEEEEEeCCHHHHHHHHHhccC---ccchhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCC
Confidence 469999999999999988877641 11122 1357777777887765432 1234566654
No 433
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.24 E-value=0.019 Score=60.49 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
..-+++|.|++|||||||.+.|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33579999999999999999997754
No 434
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.24 E-value=0.018 Score=59.98 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998754
No 435
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.22 E-value=0.024 Score=63.52 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=30.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D 549 (818)
...|.=|.+.||+|+|||++|+++|..+++.++.++
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 346777889999999999999999999998766554
No 436
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.21 E-value=0.031 Score=58.83 Aligned_cols=31 Identities=29% Similarity=0.589 Sum_probs=25.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis 547 (818)
+.-|.+.||+|+|||++|+.+++.++..++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~ 80 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3445679999999999999999999865443
No 437
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.20 E-value=0.028 Score=60.61 Aligned_cols=27 Identities=37% Similarity=0.362 Sum_probs=24.4
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
+++.+|+|+|++||||||++..|+..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999876
No 438
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.19 E-value=0.028 Score=61.57 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=28.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D 94 (818)
..-|.+.|++|+||||+|+.|++.++.+++..+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 445889999999999999999999987766544
No 439
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.19 E-value=0.038 Score=67.04 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=29.0
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D 94 (818)
..+..|+|.|++||||||+|+.|+..++..++..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 34557999999999999999999999887765444
No 440
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.18 E-value=0.025 Score=62.00 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=25.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh----CCeEEeccc
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI----GCTLISMEN 95 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L----g~~vI~~D~ 95 (818)
-+|+|+||+||||||+.+.|...+ +..++...+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed 160 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIED 160 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccC
Confidence 399999999999999999998765 344554433
No 441
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.17 E-value=0.062 Score=53.68 Aligned_cols=27 Identities=48% Similarity=0.598 Sum_probs=24.1
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.+..+|+|+|.+||||||++..|+..+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998765
No 442
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.16 E-value=0.026 Score=57.35 Aligned_cols=28 Identities=21% Similarity=0.110 Sum_probs=25.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg~ 88 (818)
+..+|.+.|++||||||+++.|++.++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3568999999999999999999999986
No 443
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.14 E-value=0.056 Score=61.04 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=28.5
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC--CeEEeccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMEN 95 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~ 95 (818)
.+.-|.+.||+|+|||++|+.++..+| +.++..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~ 98 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeH
Confidence 345688999999999999999999998 66655443
No 444
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.13 E-value=0.021 Score=59.40 Aligned_cols=24 Identities=29% Similarity=0.627 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
-+++|.|++|||||||.+.|+..+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999997654
No 445
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.13 E-value=0.025 Score=61.09 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=28.2
Q ss_pred HHHHHHHHHHH-HhcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 46 YLLVKSIQELR-EKKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 46 ~~l~~~i~~~~-~~~~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
...++.+.... +....+. +.|.|++|+||||+++.|+..+
T Consensus 20 ~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 20 EELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp HHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 34445554443 3333344 8999999999999999999854
No 446
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.13 E-value=0.02 Score=60.00 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=22.0
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.-++||.|++|||||||.+.|+..+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3479999999999999999998754
No 447
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.11 E-value=0.021 Score=60.43 Aligned_cols=25 Identities=28% Similarity=0.185 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.-++||.|++|||||||.+.|+..+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3479999999999999999997654
No 448
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.10 E-value=0.028 Score=56.29 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.-+++|.|++|||||||++.++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998644
No 449
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.08 E-value=0.041 Score=59.09 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=27.2
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~ 548 (818)
+.-|.+.||+|+|||++|+.+++.++..++..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~v 82 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANSTFFSV 82 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE
Confidence 45688899999999999999999998765543
No 450
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.08 E-value=0.024 Score=61.83 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=27.3
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D 549 (818)
+.-|.+.||+|+|||++|+.|++.++..++..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 445778999999999999999999987665543
No 451
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.05 E-value=0.043 Score=62.81 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=26.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhCCeEEecc
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIGCTLISME 94 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg~~vI~~D 94 (818)
=|.|.||+|+||||||+.++..++..++..+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~ 96 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITAS 96 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3899999999999999999998886655443
No 452
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.04 E-value=0.043 Score=58.30 Aligned_cols=30 Identities=37% Similarity=0.494 Sum_probs=24.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEV 545 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~v 545 (818)
.+..|.|.|++|+||||+|+.++..++..+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~ 66 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 344567799999999999999999887554
No 453
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.03 E-value=0.03 Score=64.44 Aligned_cols=32 Identities=31% Similarity=0.451 Sum_probs=27.4
Q ss_pred CEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460 517 PVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (818)
Q Consensus 517 p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~ 548 (818)
+..+.|.||+|+||||+|+.+++.+++.++.+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 45778899999999999999999998776544
No 454
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.02 E-value=0.022 Score=59.30 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
-+++|.|++|||||||.+.|+..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998754
No 455
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.01 E-value=0.021 Score=62.52 Aligned_cols=24 Identities=42% Similarity=0.461 Sum_probs=21.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-+++|.||+|||||||.+.|+..+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 378999999999999999998755
No 456
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.00 E-value=0.024 Score=62.26 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|+..+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 479999999999999999998755
No 457
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.99 E-value=0.025 Score=61.90 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=23.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIVGC 543 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~lg~ 543 (818)
-.++|.|++|||||||++.|+..+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999998764
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.97 E-value=0.028 Score=55.09 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=27.6
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhCCcccccccccc
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFK 553 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg~~vis~Ddfy~ 553 (818)
-|.|+|+||+||||+|..|.+ -|..+++-|....
T Consensus 18 gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~i 51 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID-RGHQLVCDDVIDL 51 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEEE
Confidence 477899999999999999988 4777776665544
No 459
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=93.94 E-value=0.054 Score=59.07 Aligned_cols=35 Identities=23% Similarity=0.579 Sum_probs=28.1
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMEN 95 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~ 95 (818)
...+|+|+|++|||||||.+.|...+ .+.|+..|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 36899999999999999999998754 245666554
No 460
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.92 E-value=0.06 Score=56.86 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.7
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
....-|.|.|++|+|||++|+.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344578999999999999999999887
No 461
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.91 E-value=0.045 Score=51.50 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~L 86 (818)
-|.|.|++|+|||++|+.++...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999998864
No 462
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.90 E-value=0.031 Score=62.78 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D 549 (818)
...|.=|.+-||+|+|||++|+++|..+++.+++++
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 345777889999999999999999999998766544
No 463
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.90 E-value=0.048 Score=59.23 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=25.4
Q ss_pred cCCCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 513 NKGLPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 513 ~~~~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
...+..+|||.|++|||||||.+.|...+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45667899999999999999999998765
No 464
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.90 E-value=0.053 Score=59.20 Aligned_cols=32 Identities=31% Similarity=0.435 Sum_probs=27.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCCcccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGCEVVS 547 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis 547 (818)
.+.-|.|.||+|+||||+|+.++..++..++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 45678889999999999999999998866543
No 465
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.90 E-value=0.023 Score=59.62 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=20.7
Q ss_pred EEeeeCCCCccHHHHHHHHHHHh
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~l 541 (818)
+++|.||+|||||||.+.|+..+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999997654
No 466
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.89 E-value=0.055 Score=58.73 Aligned_cols=30 Identities=33% Similarity=0.632 Sum_probs=25.8
Q ss_pred HhcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 57 EKKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 57 ~~~~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
-...+..+|+|.|++|||||||.+.|+..+
T Consensus 50 ~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 50 PQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344667899999999999999999998765
No 467
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.89 E-value=0.031 Score=60.30 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.2
Q ss_pred CCCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 515 GLPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 515 ~~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
..|. +.|.||+|+||||+++.++..+
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 3455 8899999999999999999954
No 468
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.88 E-value=0.019 Score=61.60 Aligned_cols=24 Identities=25% Similarity=0.520 Sum_probs=21.2
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-++||.||+|||||||.+.|...+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 479999999999999999987654
No 469
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.87 E-value=0.057 Score=58.26 Aligned_cols=41 Identities=24% Similarity=0.264 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 46 YLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 46 ~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
..+++.+....+...-+. +.+.||+|+||||+++.++..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 445555555544443333 89999999999999999999763
No 470
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.85 E-value=0.028 Score=56.00 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHH
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMAN 539 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~ 539 (818)
.--+++|.|++|||||||+..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999987
No 471
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.84 E-value=0.032 Score=62.69 Aligned_cols=35 Identities=34% Similarity=0.436 Sum_probs=29.9
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSL 548 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~ 548 (818)
...|.=|.+.||+|+|||++|+++|..+++.++++
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 34677788999999999999999999999876554
No 472
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.84 E-value=0.033 Score=56.69 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=25.1
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhCC
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVGC 543 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg~ 543 (818)
+..+|.+.|++||||||+++.|++.++.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3567889999999999999999999975
No 473
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.83 E-value=0.028 Score=59.89 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=28.5
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh----C--Ccccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV----G--CEVVSLESY 551 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l----g--~~vis~Ddf 551 (818)
++.+|++.|++||||||++..|+..+ | +.++..|-|
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 46799999999999999999999765 3 345666654
No 474
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=93.82 E-value=0.06 Score=58.28 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhCC
Q 003460 48 LVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIGC 88 (818)
Q Consensus 48 l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg~ 88 (818)
.++.+.........+..+.|.|++|+||||+++.+++.+++
T Consensus 24 ~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 24 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp HHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33344333333444457889999999999999999998864
No 475
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.81 E-value=0.074 Score=59.87 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=34.0
Q ss_pred CCcccccchh-----hHHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 35 LPVHASFDHG-----YYLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 35 ~~~~~s~~~~-----~~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
++...+|++- .......+...........-+.|.|++|+||||+++.++..+
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4455677761 122233333333333325568999999999999999999877
No 476
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.80 E-value=0.06 Score=60.84 Aligned_cols=34 Identities=32% Similarity=0.482 Sum_probs=27.6
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHhC--Ccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIVG--CEVVSLE 549 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~lg--~~vis~D 549 (818)
.+.-|.+.||+|+|||++|+.++..++ +.++.++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~ 97 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMV 97 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEe
Confidence 445678899999999999999999998 5555443
No 477
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.79 E-value=0.027 Score=62.13 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.5
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-+++|.||+|||||||.+.|+-.+
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 478999999999999999998755
No 478
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.76 E-value=0.032 Score=61.50 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=23.0
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
..-+|+|+||+||||||+.+.|...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45689999999999999999998765
No 479
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.76 E-value=0.027 Score=59.06 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.-+++|.|++|||||||.+.|+..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999997654
No 480
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.75 E-value=0.027 Score=61.72 Aligned_cols=25 Identities=40% Similarity=0.312 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
--+++|.||+|||||||.+.|+..+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3478999999999999999998755
No 481
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.74 E-value=0.031 Score=61.39 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
.--++||.|++|||||||.+.|+..+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 33579999999999999999998755
No 482
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.73 E-value=0.029 Score=61.41 Aligned_cols=24 Identities=46% Similarity=0.754 Sum_probs=21.4
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
-+++|.||+|||||||.+.|+..+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 378999999999999999998755
No 483
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.72 E-value=0.035 Score=53.89 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 64 TVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 64 iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
+.+|+|++||||||+.++|.-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999988775
No 484
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.71 E-value=0.033 Score=54.08 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=22.1
Q ss_pred EEeeeCCCCccHHHHHHHHHHHhC
Q 003460 519 IVGIGGPSGSGKTSLAHKMANIVG 542 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~~~lg 542 (818)
+.+|.|++||||||+.++|.-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 788999999999999999988775
No 485
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.70 E-value=0.039 Score=60.74 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.6
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
...-+|+|+|++||||||+.+.|+..+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999998865
No 486
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.70 E-value=0.029 Score=61.46 Aligned_cols=20 Identities=45% Similarity=0.660 Sum_probs=0.0
Q ss_pred EEeeeCCCCccHHHHHHHHH
Q 003460 519 IVGIGGPSGSGKTSLAHKMA 538 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~ 538 (818)
+++|.||+|||||||.+.|+
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLA 50 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCchHHHHHHHHH
No 487
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.66 E-value=0.088 Score=52.71 Aligned_cols=27 Identities=44% Similarity=0.598 Sum_probs=23.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
...++|+|.|.+|||||||+..|+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999998765
No 488
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.65 E-value=0.025 Score=63.57 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=30.7
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHHh-----CCccccccccc
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANIV-----GCEVVSLESYF 552 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~l-----g~~vis~Ddfy 552 (818)
.|.+|+|+|++||||||++..|+..+ .+.++++|-|.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 46789999999999999999999876 35677777654
No 489
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.64 E-value=0.032 Score=61.95 Aligned_cols=36 Identities=33% Similarity=0.521 Sum_probs=30.1
Q ss_pred CCCCEEEeeeCCCCccHHHHHHHHHHHhCCcccccc
Q 003460 514 KGLPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLE 549 (818)
Q Consensus 514 ~~~p~iIgIsG~sGSGKTTla~~L~~~lg~~vis~D 549 (818)
...|.=|.+.||+|+|||++|+++|..+++.+++++
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 345667888999999999999999999998776544
No 490
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.64 E-value=0.021 Score=61.25 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.4
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
..-++||.|++|||||||.+.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 34579999999999999999997655
No 491
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=93.63 E-value=0.044 Score=57.89 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=22.3
Q ss_pred EEEeeeCCCCccHHHHHHHHHHHh
Q 003460 518 VIVGIGGPSGSGKTSLAHKMANIV 541 (818)
Q Consensus 518 ~iIgIsG~sGSGKTTla~~L~~~l 541 (818)
..+.+.||+|+||||+|+.|+..+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 478999999999999999999987
No 492
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.62 E-value=0.031 Score=61.39 Aligned_cols=20 Identities=45% Similarity=0.752 Sum_probs=0.0
Q ss_pred EEeeeCCCCccHHHHHHHHH
Q 003460 519 IVGIGGPSGSGKTSLAHKMA 538 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~ 538 (818)
+++|.||+|||||||.+.|+
T Consensus 31 ~~~llGpnGsGKSTLLr~ia 50 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIA 50 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHh
No 493
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.62 E-value=0.037 Score=55.16 Aligned_cols=35 Identities=31% Similarity=0.376 Sum_probs=26.2
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHhC--CeEEeccc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVIG--CTLISMEN 95 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~Lg--~~vI~~D~ 95 (818)
..-+++|.|++|||||||+..++..-| +.+++.+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 345899999999999999999987334 33445443
No 494
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.60 E-value=0.033 Score=61.46 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 62 IVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 62 ~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
--+++|.||+|||||||.+.|+..+
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3579999999999999999998755
No 495
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.59 E-value=0.09 Score=57.13 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=23.9
Q ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 60 GGIVTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 60 ~~~~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
..+..|.|.|++|+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999877
No 496
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.56 E-value=0.083 Score=55.88 Aligned_cols=41 Identities=27% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEeCCCCCcHHHHHHHHHHHhC
Q 003460 46 YLLVKSIQELREKKGGIVTVGIGGPSGSGKTSLAEKLASVIG 87 (818)
Q Consensus 46 ~~l~~~i~~~~~~~~~~~iIgI~G~sGSGKSTlA~~La~~Lg 87 (818)
...++.+.........+. +.|.|++|+||||+|+.+++.++
T Consensus 31 ~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 31 EHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhc
Confidence 334444444444443334 89999999999999999998763
No 497
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.56 E-value=0.026 Score=63.45 Aligned_cols=39 Identities=38% Similarity=0.449 Sum_probs=32.3
Q ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHh-----CCeEEeccceecc
Q 003460 61 GIVTVGIGGPSGSGKTSLAEKLASVI-----GCTLISMENYRVG 99 (818)
Q Consensus 61 ~~~iIgI~G~sGSGKSTlA~~La~~L-----g~~vI~~D~~~~~ 99 (818)
.+.+|+|+|++||||||++..|+..+ .+.++++|.+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~ 141 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 141 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCch
Confidence 35789999999999999999999876 2677898887543
No 498
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.55 E-value=0.032 Score=61.47 Aligned_cols=20 Identities=40% Similarity=0.607 Sum_probs=0.0
Q ss_pred EEeeeCCCCccHHHHHHHHH
Q 003460 519 IVGIGGPSGSGKTSLAHKMA 538 (818)
Q Consensus 519 iIgIsG~sGSGKTTla~~L~ 538 (818)
+++|.||+|||||||.+.|+
T Consensus 39 ~~~llGpnGsGKSTLLr~ia 58 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIA 58 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
No 499
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.52 E-value=0.035 Score=60.78 Aligned_cols=24 Identities=46% Similarity=0.688 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHh
Q 003460 63 VTVGIGGPSGSGKTSLAEKLASVI 86 (818)
Q Consensus 63 ~iIgI~G~sGSGKSTlA~~La~~L 86 (818)
-+++|.||+|||||||.+.|+..+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999998755
No 500
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.52 E-value=0.034 Score=56.31 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=21.9
Q ss_pred CCEEEeeeCCCCccHHHHHHHHHHH
Q 003460 516 LPVIVGIGGPSGSGKTSLAHKMANI 540 (818)
Q Consensus 516 ~p~iIgIsG~sGSGKTTla~~L~~~ 540 (818)
+--+++|.|++|||||||+..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999999874
Done!