Query 003461
Match_columns 818
No_of_seqs 442 out of 2758
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 23:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003461.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003461hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2253 U1 snRNP complex, subu 100.0 4.9E-68 1.1E-72 594.6 31.1 609 100-813 39-668 (668)
2 KOG4661 Hsp27-ERE-TATA-binding 99.7 1.4E-17 3.1E-22 184.0 16.3 80 99-178 403-482 (940)
3 PF01480 PWI: PWI domain; Int 99.7 1.5E-18 3.2E-23 151.7 6.0 68 740-807 2-74 (77)
4 smart00311 PWI PWI, domain in 99.7 2.2E-17 4.9E-22 143.2 8.2 71 736-806 3-73 (74)
5 KOG2146 Splicing coactivator S 99.6 2.5E-16 5.4E-21 162.8 3.1 91 720-814 27-120 (354)
6 PLN03134 glycine-rich RNA-bind 99.5 1.5E-13 3.3E-18 134.3 12.4 82 99-180 32-113 (144)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 4.2E-13 9E-18 148.7 16.6 82 99-180 267-348 (352)
8 KOG0121 Nuclear cap-binding pr 99.4 2.4E-13 5.3E-18 126.6 6.7 83 99-181 34-116 (153)
9 TIGR01659 sex-lethal sex-letha 99.4 6.2E-12 1.3E-16 139.6 18.3 83 98-180 104-186 (346)
10 KOG0125 Ataxin 2-binding prote 99.4 2.5E-12 5.4E-17 136.2 12.9 82 98-181 93-174 (376)
11 PF00076 RRM_1: RNA recognitio 99.4 2.6E-12 5.7E-17 108.0 9.3 70 104-174 1-70 (70)
12 KOG0146 RNA-binding protein ET 99.4 1E-12 2.2E-17 135.3 7.6 88 91-178 275-362 (371)
13 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 2.4E-12 5.3E-17 142.6 10.5 81 100-180 2-82 (352)
14 KOG0113 U1 small nuclear ribon 99.3 4.6E-12 9.9E-17 132.8 9.8 85 95-179 95-179 (335)
15 KOG0122 Translation initiation 99.3 3.1E-11 6.8E-16 123.7 12.7 83 98-180 186-268 (270)
16 KOG0149 Predicted RNA-binding 99.2 9E-12 2E-16 127.2 6.5 81 98-179 9-89 (247)
17 TIGR01645 half-pint poly-U bin 99.2 2.6E-11 5.6E-16 142.0 10.6 81 100-180 203-283 (612)
18 PF14259 RRM_6: RNA recognitio 99.2 4.6E-11 9.9E-16 101.4 9.1 70 104-174 1-70 (70)
19 TIGR01645 half-pint poly-U bin 99.2 2.6E-11 5.6E-16 141.9 9.4 79 99-177 105-183 (612)
20 PLN03213 repressor of silencin 99.2 6.2E-11 1.3E-15 130.5 10.7 89 99-193 8-98 (759)
21 KOG0145 RNA-binding protein EL 99.2 1.6E-10 3.5E-15 118.9 13.1 80 100-179 277-356 (360)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1.3E-10 2.8E-15 135.3 13.9 82 99-180 293-374 (509)
23 PLN03120 nucleic acid binding 99.2 5.9E-11 1.3E-15 124.9 9.9 75 101-179 4-78 (260)
24 KOG0145 RNA-binding protein EL 99.2 1.2E-10 2.6E-15 119.9 10.7 89 97-185 37-125 (360)
25 TIGR01659 sex-lethal sex-letha 99.2 7.9E-11 1.7E-15 130.8 10.2 81 100-180 192-274 (346)
26 KOG0117 Heterogeneous nuclear 99.2 1.1E-10 2.4E-15 128.1 10.2 81 100-180 82-163 (506)
27 KOG0108 mRNA cleavage and poly 99.1 5.5E-11 1.2E-15 134.3 7.8 81 102-182 19-99 (435)
28 smart00362 RRM_2 RNA recogniti 99.1 2.5E-10 5.3E-15 94.7 9.5 72 103-176 1-72 (72)
29 TIGR01622 SF-CC1 splicing fact 99.1 1.3E-10 2.9E-15 133.5 10.6 79 101-179 186-264 (457)
30 KOG0126 Predicted RNA-binding 99.1 1E-11 2.3E-16 122.0 -0.2 79 99-177 33-111 (219)
31 TIGR01628 PABP-1234 polyadenyl 99.1 2.9E-10 6.4E-15 134.3 11.9 84 100-184 284-367 (562)
32 KOG0127 Nucleolar protein fibr 99.1 3E-10 6.5E-15 126.9 10.6 88 98-186 114-201 (678)
33 smart00360 RRM RNA recognition 99.1 5.8E-10 1.2E-14 92.0 9.2 70 106-175 1-70 (71)
34 KOG0148 Apoptosis-promoting RN 99.1 1.8E-10 3.9E-15 119.5 7.4 81 101-181 62-142 (321)
35 KOG0107 Alternative splicing f 99.1 2.3E-10 4.9E-15 112.3 7.3 76 100-180 9-84 (195)
36 KOG4207 Predicted splicing fac 99.1 1.8E-10 3.9E-15 115.4 6.7 81 100-180 12-92 (256)
37 TIGR01628 PABP-1234 polyadenyl 99.1 3.8E-10 8.2E-15 133.4 10.4 77 103-179 2-78 (562)
38 COG0724 RNA-binding proteins ( 99.1 4.6E-10 1E-14 116.3 9.7 80 101-180 115-194 (306)
39 KOG0124 Polypyrimidine tract-b 99.1 1E-10 2.2E-15 124.9 4.4 78 100-177 112-189 (544)
40 TIGR01648 hnRNP-R-Q heterogene 99.1 4.6E-10 9.9E-15 131.3 10.2 79 100-179 57-136 (578)
41 PLN03121 nucleic acid binding 99.0 6.1E-10 1.3E-14 115.7 9.5 76 100-179 4-79 (243)
42 TIGR01622 SF-CC1 splicing fact 99.0 6.5E-10 1.4E-14 127.8 10.7 81 98-179 86-166 (457)
43 KOG0131 Splicing factor 3b, su 99.0 2.1E-10 4.5E-15 113.2 5.3 81 99-179 7-87 (203)
44 KOG4676 Splicing factor, argin 99.0 6.9E-11 1.5E-15 127.5 1.9 145 1-169 70-214 (479)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.0 2.4E-09 5.3E-14 124.3 14.3 78 98-180 272-350 (481)
46 KOG0148 Apoptosis-promoting RN 99.0 1.1E-09 2.4E-14 113.8 8.8 76 98-179 161-236 (321)
47 cd00590 RRM RRM (RNA recogniti 99.0 3.7E-09 8.1E-14 88.0 10.0 74 103-177 1-74 (74)
48 KOG0111 Cyclophilin-type pepti 98.9 3.5E-10 7.5E-15 114.1 3.3 83 100-182 9-91 (298)
49 KOG0130 RNA-binding protein RB 98.9 1.1E-09 2.4E-14 103.2 6.3 80 100-179 71-150 (170)
50 KOG0144 RNA-binding protein CU 98.9 5.2E-09 1.1E-13 114.6 10.4 87 98-184 31-120 (510)
51 KOG0114 Predicted RNA-binding 98.9 1.4E-08 3E-13 92.0 10.8 81 100-183 17-97 (124)
52 KOG0415 Predicted peptidyl pro 98.9 2.1E-09 4.6E-14 114.8 6.4 86 98-183 236-321 (479)
53 KOG0147 Transcriptional coacti 98.9 2.4E-09 5.3E-14 120.5 7.2 80 100-179 277-356 (549)
54 TIGR01642 U2AF_lg U2 snRNP aux 98.9 1E-08 2.3E-13 119.4 11.4 75 96-177 170-256 (509)
55 KOG0226 RNA-binding proteins [ 98.8 1.8E-08 4E-13 104.1 11.4 92 99-190 188-279 (290)
56 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.8 8.9E-09 1.9E-13 119.7 9.8 75 100-180 1-77 (481)
57 KOG0127 Nucleolar protein fibr 98.8 1.5E-08 3.3E-13 113.6 10.3 84 100-183 291-380 (678)
58 TIGR01648 hnRNP-R-Q heterogene 98.8 1.2E-08 2.6E-13 119.5 9.8 73 100-180 232-306 (578)
59 smart00361 RRM_1 RNA recogniti 98.8 1.9E-08 4.2E-13 86.1 8.6 61 115-175 2-69 (70)
60 KOG0144 RNA-binding protein CU 98.8 5.2E-09 1.1E-13 114.6 6.2 81 100-181 123-206 (510)
61 KOG0105 Alternative splicing f 98.8 8.3E-09 1.8E-13 102.0 6.2 78 100-180 5-82 (241)
62 KOG0109 RNA-binding protein LA 98.8 7.3E-09 1.6E-13 108.7 6.1 70 102-179 3-72 (346)
63 PF13893 RRM_5: RNA recognitio 98.8 3.8E-08 8.3E-13 80.2 8.7 56 118-178 1-56 (56)
64 KOG0124 Polypyrimidine tract-b 98.8 1.1E-08 2.4E-13 109.7 6.6 95 84-178 186-287 (544)
65 KOG0117 Heterogeneous nuclear 98.7 3.1E-08 6.7E-13 109.1 7.4 76 98-181 256-331 (506)
66 KOG0109 RNA-binding protein LA 98.6 2.7E-08 5.9E-13 104.5 5.2 80 94-181 71-150 (346)
67 KOG4208 Nucleolar RNA-binding 98.6 8.2E-08 1.8E-12 97.0 7.9 83 99-181 47-130 (214)
68 KOG0131 Splicing factor 3b, su 98.6 7.3E-08 1.6E-12 95.5 5.9 81 99-179 94-175 (203)
69 KOG0146 RNA-binding protein ET 98.5 2.1E-07 4.6E-12 96.6 7.7 81 100-181 18-101 (371)
70 KOG0123 Polyadenylate-binding 98.5 2.5E-07 5.5E-12 103.7 8.7 74 104-180 79-152 (369)
71 KOG4212 RNA-binding protein hn 98.5 3E-07 6.4E-12 100.9 8.6 78 100-178 43-121 (608)
72 KOG4206 Spliceosomal protein s 98.5 2.5E-07 5.4E-12 94.8 6.9 84 101-187 9-96 (221)
73 KOG0110 RNA-binding protein (R 98.4 7.5E-07 1.6E-11 103.3 8.6 78 101-179 515-596 (725)
74 KOG0110 RNA-binding protein (R 98.4 3.3E-07 7.1E-12 106.2 5.7 91 100-191 612-702 (725)
75 KOG0132 RNA polymerase II C-te 98.4 6E-07 1.3E-11 104.6 7.2 75 100-180 420-494 (894)
76 KOG1457 RNA binding protein (c 98.3 3.3E-06 7.1E-11 86.2 11.1 82 99-180 32-117 (284)
77 KOG0151 Predicted splicing reg 98.3 2E-06 4.3E-11 99.4 8.9 84 98-181 171-257 (877)
78 KOG1548 Transcription elongati 98.2 2.4E-06 5.3E-11 92.0 8.3 80 99-179 132-219 (382)
79 KOG4212 RNA-binding protein hn 98.2 1.4E-06 3E-11 95.8 6.5 76 98-178 533-608 (608)
80 KOG0123 Polyadenylate-binding 98.2 2.2E-06 4.8E-11 96.2 7.6 73 102-180 2-74 (369)
81 KOG0153 Predicted RNA-binding 98.2 2.5E-06 5.5E-11 91.9 7.6 80 95-180 222-302 (377)
82 KOG4205 RNA-binding protein mu 98.2 8.2E-07 1.8E-11 96.9 3.9 81 100-181 5-85 (311)
83 KOG0120 Splicing factor U2AF, 98.2 2.9E-06 6.3E-11 97.1 7.0 83 98-180 286-368 (500)
84 KOG0533 RRM motif-containing p 98.1 7.7E-06 1.7E-10 86.3 8.4 81 98-179 80-160 (243)
85 KOG0116 RasGAP SH3 binding pro 98.1 4.5E-06 9.8E-11 94.4 7.0 75 101-176 288-362 (419)
86 KOG4209 Splicing factor RNPS1, 98.1 4.1E-06 8.8E-11 88.3 5.6 80 98-178 98-177 (231)
87 KOG1924 RhoA GTPase effector D 98.0 1.8E-05 3.9E-10 92.5 10.2 10 17-26 522-531 (1102)
88 KOG4454 RNA binding protein (R 98.0 3.7E-06 8E-11 85.6 3.6 79 100-180 8-86 (267)
89 KOG4205 RNA-binding protein mu 98.0 5.3E-06 1.2E-10 90.6 5.1 81 100-181 96-176 (311)
90 KOG4849 mRNA cleavage factor I 97.8 0.00036 7.7E-09 75.4 14.3 77 104-192 348-425 (498)
91 KOG2253 U1 snRNP complex, subu 97.8 0.00063 1.4E-08 79.3 16.9 33 577-610 515-547 (668)
92 KOG2416 Acinus (induces apopto 97.8 5.8E-05 1.3E-09 86.2 8.3 78 97-180 440-521 (718)
93 KOG4660 Protein Mei2, essentia 97.8 2.6E-05 5.7E-10 88.8 5.6 73 97-174 71-143 (549)
94 KOG0106 Alternative splicing f 97.8 2.1E-05 4.6E-10 81.4 4.1 71 102-180 2-72 (216)
95 PF04059 RRM_2: RNA recognitio 97.7 0.00019 4.1E-09 65.7 9.4 78 102-179 2-85 (97)
96 KOG1190 Polypyrimidine tract-b 97.4 0.00093 2E-08 73.8 10.4 75 101-180 297-372 (492)
97 KOG1457 RNA binding protein (c 97.3 0.00077 1.7E-08 69.3 8.7 65 100-168 209-273 (284)
98 KOG1995 Conserved Zn-finger pr 97.2 0.00025 5.3E-09 77.5 4.0 83 99-181 64-154 (351)
99 KOG0147 Transcriptional coacti 97.2 0.00025 5.5E-09 80.9 4.2 83 98-181 176-258 (549)
100 KOG1456 Heterogeneous nuclear 97.2 0.0072 1.6E-07 66.3 14.3 77 98-179 284-361 (494)
101 PF11608 Limkain-b1: Limkain b 97.0 0.0016 3.5E-08 57.6 6.2 69 102-180 3-76 (90)
102 KOG4307 RNA binding protein RB 97.0 0.014 2.9E-07 68.5 15.3 76 101-177 867-943 (944)
103 KOG4849 mRNA cleavage factor I 97.0 0.0011 2.3E-08 71.9 6.0 80 99-178 78-159 (498)
104 KOG3152 TBP-binding protein, a 96.9 0.00047 1E-08 72.1 2.3 87 100-186 73-172 (278)
105 KOG4210 Nuclear localization s 96.6 0.0011 2.3E-08 72.3 2.4 82 99-181 182-264 (285)
106 KOG4211 Splicing factor hnRNP- 96.6 0.0051 1.1E-07 69.7 7.6 75 101-179 10-84 (510)
107 KOG2314 Translation initiation 96.5 0.0082 1.8E-07 68.9 8.7 76 100-176 57-139 (698)
108 KOG4307 RNA binding protein RB 96.4 0.011 2.3E-07 69.3 9.2 77 101-178 434-511 (944)
109 PF08777 RRM_3: RNA binding mo 96.3 0.0087 1.9E-07 55.7 6.4 85 102-192 2-93 (105)
110 COG5175 MOT2 Transcriptional r 96.3 0.011 2.3E-07 64.1 7.4 88 101-190 114-210 (480)
111 KOG4206 Spliceosomal protein s 96.2 0.019 4.1E-07 59.6 8.5 77 98-179 143-220 (221)
112 KOG0129 Predicted RNA-binding 96.0 0.015 3.3E-07 66.5 7.6 64 99-162 368-432 (520)
113 KOG0106 Alternative splicing f 96.0 0.0039 8.4E-08 64.9 2.4 68 100-175 98-165 (216)
114 KOG1855 Predicted RNA-binding 95.9 0.006 1.3E-07 68.0 3.5 80 88-167 218-310 (484)
115 KOG4211 Splicing factor hnRNP- 95.6 0.03 6.5E-07 63.7 7.5 75 100-176 102-177 (510)
116 PF08952 DUF1866: Domain of un 95.4 0.054 1.2E-06 53.1 7.8 72 98-178 24-104 (146)
117 KOG1190 Polypyrimidine tract-b 95.2 0.034 7.4E-07 61.9 6.2 78 99-180 412-490 (492)
118 PF05172 Nup35_RRM: Nup53/35/4 95.1 0.06 1.3E-06 49.8 6.5 79 101-181 6-92 (100)
119 KOG1548 Transcription elongati 94.8 0.076 1.7E-06 58.2 7.3 79 99-181 263-352 (382)
120 KOG1365 RNA-binding protein Fu 94.5 0.078 1.7E-06 58.6 6.6 77 101-178 280-359 (508)
121 KOG0128 RNA-binding protein SA 94.1 0.021 4.4E-07 68.7 1.2 80 100-180 735-814 (881)
122 KOG0112 Large RNA-binding prot 94.0 0.095 2.1E-06 63.5 6.6 82 97-184 451-534 (975)
123 KOG4676 Splicing factor, argin 94.0 0.082 1.8E-06 58.7 5.5 81 101-182 7-91 (479)
124 KOG0120 Splicing factor U2AF, 93.7 0.16 3.4E-06 59.2 7.3 63 118-180 426-491 (500)
125 KOG0129 Predicted RNA-binding 93.7 0.54 1.2E-05 54.3 11.4 79 99-180 257-340 (520)
126 PF14605 Nup35_RRM_2: Nup53/35 93.4 0.15 3.2E-06 41.6 4.8 52 102-160 2-53 (53)
127 KOG0128 RNA-binding protein SA 93.3 0.015 3.3E-07 69.7 -1.5 70 100-169 666-735 (881)
128 KOG2193 IGF-II mRNA-binding pr 92.5 0.18 3.9E-06 56.5 5.3 77 102-185 2-80 (584)
129 KOG0105 Alternative splicing f 91.1 0.88 1.9E-05 46.2 7.9 63 100-169 114-176 (241)
130 KOG0112 Large RNA-binding prot 91.1 0.19 4E-06 61.1 3.8 78 100-178 371-448 (975)
131 KOG0115 RNA-binding protein p5 90.8 0.21 4.6E-06 52.9 3.5 63 101-164 31-93 (275)
132 PTZ00121 MAEBL; Provisional 90.8 11 0.00023 48.9 18.2 14 149-162 939-952 (2084)
133 KOG1996 mRNA splicing factor [ 90.0 0.87 1.9E-05 49.1 7.2 63 117-179 302-365 (378)
134 PTZ00266 NIMA-related protein 89.7 3.4 7.4E-05 52.6 13.3 21 716-736 874-894 (1021)
135 KOG1456 Heterogeneous nuclear 89.6 0.84 1.8E-05 50.7 6.9 70 107-181 128-199 (494)
136 KOG1365 RNA-binding protein Fu 89.1 0.34 7.5E-06 53.8 3.5 79 101-193 161-243 (508)
137 KOG4285 Mitotic phosphoprotein 88.9 5 0.00011 43.8 11.9 65 104-176 200-265 (350)
138 KOG2068 MOT2 transcription fac 87.5 0.26 5.6E-06 54.2 1.4 87 101-190 77-170 (327)
139 KOG4574 RNA-binding protein (c 87.3 1.7 3.6E-05 53.0 7.8 77 99-181 296-374 (1007)
140 PF15023 DUF4523: Protein of u 86.0 2.4 5.2E-05 41.5 6.9 74 98-179 83-160 (166)
141 KOG2202 U2 snRNP splicing fact 83.3 0.7 1.5E-05 49.1 2.1 57 124-181 92-148 (260)
142 PF08675 RNA_bind: RNA binding 82.5 3.4 7.3E-05 37.1 5.7 54 103-164 10-63 (87)
143 PF10309 DUF2414: Protein of u 82.2 4.8 0.0001 34.1 6.3 55 101-163 5-62 (62)
144 PF04847 Calcipressin: Calcipr 81.6 3.5 7.7E-05 42.3 6.4 61 115-181 9-71 (184)
145 KOG2135 Proteins containing th 79.9 1.6 3.4E-05 50.1 3.4 75 100-181 371-446 (526)
146 PF03467 Smg4_UPF3: Smg-4/UPF3 79.5 2.3 5.1E-05 43.3 4.3 81 100-180 6-97 (176)
147 KOG4660 Protein Mei2, essentia 79.3 4.8 0.0001 47.2 7.1 66 125-190 413-484 (549)
148 KOG4661 Hsp27-ERE-TATA-binding 78.8 15 0.00034 43.1 10.8 38 274-311 548-585 (940)
149 TIGR03687 pupylate_cterm ubiqu 77.8 3.2 6.9E-05 30.3 3.3 24 774-797 4-27 (33)
150 KOG1923 Rac1 GTPase effector F 77.0 6.9 0.00015 47.5 7.7 6 118-123 406-411 (830)
151 PF03880 DbpA: DbpA RNA bindin 76.9 8.7 0.00019 33.3 6.5 59 111-178 11-74 (74)
152 KOG4210 Nuclear localization s 76.4 2.1 4.5E-05 47.0 3.1 82 99-180 86-167 (285)
153 PF07576 BRAP2: BRCA1-associat 71.6 25 0.00053 33.2 8.6 67 101-169 13-80 (110)
154 COG5178 PRP8 U5 snRNP spliceos 71.1 4 8.7E-05 51.1 3.9 33 99-131 70-102 (2365)
155 PF11517 Nab2: Nuclear abundan 70.6 22 0.00048 32.8 7.5 74 738-811 8-83 (107)
156 KOG0226 RNA-binding proteins [ 65.5 15 0.00033 39.4 6.3 72 100-172 95-169 (290)
157 PF03276 Gag_spuma: Spumavirus 64.7 19 0.00042 42.4 7.5 42 118-160 294-337 (582)
158 KOG4364 Chromatin assembly fac 58.9 1.6E+02 0.0035 35.8 13.6 7 154-160 83-89 (811)
159 KOG1925 Rac1 GTPase effector F 57.8 45 0.00098 38.9 8.7 25 100-124 305-329 (817)
160 KOG2591 c-Mpl binding protein, 55.5 20 0.00043 42.3 5.5 69 100-175 174-246 (684)
161 KOG3702 Nuclear polyadenylated 50.6 18 0.00039 43.4 4.4 63 740-802 22-84 (681)
162 KOG2318 Uncharacterized conser 49.3 55 0.0012 39.0 7.8 78 98-175 171-300 (650)
163 PF05639 Pup: Pup-like protein 48.1 7.1 0.00015 33.7 0.4 24 773-796 39-62 (69)
164 KOG0804 Cytoplasmic Zn-finger 46.3 50 0.0011 38.2 6.8 67 101-169 74-141 (493)
165 PF11600 CAF-1_p150: Chromatin 43.3 4.1E+02 0.009 27.8 15.9 9 490-498 179-187 (216)
166 PF11767 SET_assoc: Histone ly 37.9 1.1E+02 0.0023 26.4 6.0 55 112-175 11-65 (66)
167 KOG0905 Phosphoinositide 3-kin 36.4 1.4E+02 0.0031 38.7 9.0 44 702-745 841-885 (1639)
168 cd07354 HN_L-delphilin-R1_like 36.3 69 0.0015 28.5 4.7 48 747-795 9-59 (80)
169 KOG2135 Proteins containing th 35.2 41 0.0009 39.0 4.0 61 741-801 8-72 (526)
170 KOG3671 Actin regulatory prote 35.2 2E+02 0.0043 34.0 9.3 12 18-29 347-358 (569)
171 KOG2295 C2H2 Zn-finger protein 34.9 9.8 0.00021 44.7 -0.9 71 99-169 229-299 (648)
172 KOG1881 Anion exchanger adapto 34.6 1.3E+02 0.0029 36.9 8.2 46 104-150 179-224 (793)
173 KOG4454 RNA binding protein (R 34.2 10 0.00023 39.7 -0.8 75 100-175 79-157 (267)
174 KOG0917 Uncharacterized conser 33.7 2.9E+02 0.0062 30.3 9.6 6 148-153 314-319 (338)
175 KOG4410 5-formyltetrahydrofola 32.2 2E+02 0.0044 31.5 8.3 49 100-154 329-378 (396)
176 KOG3938 RGS-GAIP interacting p 31.7 56 0.0012 35.4 4.0 57 745-801 263-322 (334)
177 PF09707 Cas_Cas2CT1978: CRISP 31.4 76 0.0016 28.7 4.3 50 100-152 24-73 (86)
178 KOG4246 Predicted DNA-binding 30.9 23 0.0005 43.5 1.2 7 143-149 158-164 (1194)
179 KOG2888 Putative RNA binding p 29.5 32 0.0007 38.1 1.9 19 172-190 162-180 (453)
180 PF13797 Post_transc_reg: Post 29.1 1.3E+02 0.0028 27.2 5.4 58 738-795 5-67 (87)
181 KOG3671 Actin regulatory prote 29.1 5.2E+02 0.011 30.7 11.3 27 103-129 483-509 (569)
182 KOG4019 Calcineurin-mediated s 26.3 49 0.0011 34.0 2.4 75 100-180 9-89 (193)
183 KOG4246 Predicted DNA-binding 26.0 25 0.00054 43.2 0.3 12 99-110 143-154 (1194)
184 PF02607 B12-binding_2: B12 bi 25.3 1.9E+02 0.0042 24.7 5.8 51 744-799 3-54 (79)
185 KOG4840 Predicted hydrolases o 24.9 1.1E+02 0.0024 32.7 4.7 88 101-188 37-125 (299)
186 KOG2193 IGF-II mRNA-binding pr 24.8 5.6 0.00012 45.1 -4.9 78 98-178 77-154 (584)
187 PF15473 PCNP: PEST, proteolyt 24.8 27 0.00059 34.5 0.3 18 577-594 88-105 (150)
188 PRK11558 putative ssRNA endonu 24.0 97 0.0021 28.7 3.7 50 101-153 27-76 (97)
189 TIGR01795 CM_mono_cladeE monof 23.3 2.7E+02 0.0058 25.5 6.4 38 777-814 52-91 (94)
190 PF15208 Rab15_effector: Rab15 23.2 72 0.0016 33.3 3.0 25 730-760 21-45 (236)
191 KOG1984 Vesicle coat complex C 22.4 2.9E+02 0.0064 34.8 8.2 7 603-609 702-708 (1007)
192 PF03468 XS: XS domain; Inter 22.3 1.3E+02 0.0029 28.6 4.5 58 102-162 9-76 (116)
193 PRK15313 autotransport protein 22.0 1.7E+02 0.0036 37.3 6.3 9 103-111 651-659 (955)
194 cd07347 harmonin_N_like N-term 21.1 2.9E+02 0.0062 24.6 5.9 60 743-802 5-64 (78)
195 COG0724 RNA-binding proteins ( 20.8 1.1E+02 0.0024 31.1 3.9 65 98-162 222-286 (306)
No 1
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=100.00 E-value=4.9e-68 Score=594.62 Aligned_cols=609 Identities=31% Similarity=0.478 Sum_probs=363.1
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+..+||||||...|....+..++..||.|.+|+++. ||||.|.++....+|++.|+-..++|..|.++++.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 577899999999999999999999999999998744 99999999999999999999999999999998772
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhccccCCcccccccccccCCCCCCCc---------ccccccCCCCCCCCCCcCCCCch
Q 003461 180 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE---------NLKDNETGNKESHDPTNFGVVTE 250 (818)
Q Consensus 180 ~~kk~le~~k~kk~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~e---------~~~dgd~~~~~~~ev~~~~~~~e 250 (818)
.+ -++.+.++... ......|.++.+ ....++-..+..+.+++...++.
T Consensus 110 q~-----------~~n~~k~~~~~------------~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~is~s~~s~~ 166 (668)
T KOG2253|consen 110 QT-----------IENADKEKSIA------------NKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQISSSAASRR 166 (668)
T ss_pred hh-----------hcCccccccch------------hhhhcccCCchhHHHHHhhccccchhHHHHHHHHhccchhhhhh
Confidence 21 11111111000 111111222111 00011111222233344444444
Q ss_pred hhHhhhHHHHHHHHHHHHHhhhCCCCCCCCCCCCCCCCCCCCCcCCcccCCCCCcccccchhhhhhcccccccccccccc
Q 003461 251 EDRKADQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASD 330 (818)
Q Consensus 251 ed~~~D~~~~ekie~~~eer~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~re 330 (818)
....+|...++.+...+++.... +..+.+..+ +.....++....+.++ + +.+ +
T Consensus 167 ~~~e~d~h~~e~~~~~~~s~~~~----~~~~~~~~~-~~e~~~~s~~~~s~td---------s----------~~~---~ 219 (668)
T KOG2253|consen 167 QIAEADDHCLELEKTETESNSAL----SKEAESKKS-PFEDTKDSKRSFSSTD---------S----------GSE---S 219 (668)
T ss_pred hhHHHHHHHHHHHHhhccccccc----CcccccccC-chhhhchhhhhhcccC---------c----------ccc---c
Confidence 44444544444444443332221 111111000 0000000000000000 0 000 0
Q ss_pred CCCCCCCCCCcccccc-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHH
Q 003461 331 HDRPETSSPDRSRVHD-RRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREK 409 (818)
Q Consensus 331 ~dr~~~~~~~rsr~r~-rr~r~rer~~~r~~~re~~r~~r~reRer~r~~R~~~~r~~e~E~~y~eR~r~we~RER~r~~ 409 (818)
.++ . . +|+++. .+++.+...+.|...+.+++.+.....+..|++|...++..++|+||+.||+.|+.|||.+++
T Consensus 220 d~~-~--~--~s~~~n~~rd~sr~~~r~R~~~r~Re~~e~~ed~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~K 294 (668)
T KOG2253|consen 220 DSA-E--V--NSSSLNYCRDRSRFDRRSRNDRRIRERLEKNEDSDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKEK 294 (668)
T ss_pred hhh-h--h--cccccccchhhccchhhhHHHHHHHHHhhhccchHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0 001111 111111111222222222221111122456667888889999999999999999999999965
Q ss_pred HHHHHHHHHHHHH------HHHHHHHhhcccchhhhhhhhhhhhHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHH
Q 003461 410 ERQYEKEKEKERE------RKRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAEE 483 (818)
Q Consensus 410 ~r~~ekerere~e------r~r~~e~~~d~dddr~d~rk~~r~~~~~~R~~~r~rE~e~d~~dr~~E~eE~~e~~~r~~e 483 (818)
.+++++.+++.+. .+++++|++||||+++| .+||++++|+.|++++.+|+|+|.+||.+|++|++|+|++..+
T Consensus 295 e~eke~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~~ 373 (668)
T KOG2253|consen 295 EREKERLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQERLRDREREAEADRRDRHQEQEELEEIKRRHSE 373 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 5555444444432 45889999999999776 6999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHHhhhhcccccCCCcc----ccccccccCCcccccCCCCcccccCCCCCCCCCCCCCCCCCCCccccccccc
Q 003461 484 EQLQQQQRDALKLLSDNAVNGSLA----EESAVESKGMDVEHDYHDDSIRENHMAGDPSSQNGNGDESTNVPIAASDMRQ 559 (818)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 559 (818)
+..+.....+...+.+......+. ....++.........+.+.+++..|+.... .+..+-++ ..+-....
T Consensus 374 ~~~~~~~~e~~r~~~~~~~~~~~~~~~a~~ke~e~~~~~~~~q~~~e~a~~~~~~~ee--e~~s~r~~----~~~d~~~~ 447 (668)
T KOG2253|consen 374 EEAEDPSAEEERNMEEEEALDEEEDDEAVRKEPEERDLEESHQRLGESANQEHSNDEE--EIKSQRDD----YKPDENDH 447 (668)
T ss_pred hcccccchHHHHHHhhhhhhcchhhHHHHhhCcccccCccccchHHhhhhhccccchh--hcccchhh----hhhhhhhh
Confidence 765444433333333322222111 111222222222233334444444411110 00000000 00000112
Q ss_pred CCCCCccccCCCcCCCCCccccCCcCCCCCCcchhcccCCCCcccCCCChHHHhhhcCCCCCCCCCchHHHHHHHHHhhc
Q 003461 560 SGNVPARKLGFGLVGSGKRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTEELQAAQPHVSGANPPNLAAAAEFAKRISN 639 (818)
Q Consensus 560 ~~~~~~~k~~~~~~~~~kr~~v~~vf~~~dde~~~~~~~kr~Lvpl~y~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 639 (818)
-.++|...+++|+++++.+..+..+|-.-+...++....+...+||.|+.....+ .|+.++.+..++. -+-.
T Consensus 448 i~~~ps~~~~s~~~~~n~~~~~~~~~~~~~e~~~~es~n~~~n~p~~~~~~~q~~-----~g~sa~~~~i~~k---k~~~ 519 (668)
T KOG2253|consen 448 ISHAPSASLASGLVDANDRDSSPRGFKERHEREDDESLNKKINRPILASIQNQDE-----IGPSASPIPIAKK---KLPE 519 (668)
T ss_pred hhcCchhhhhhhccCCCCCCcccccccccccCcchhhhccccccccccccccccc-----ccCCCCccccccc---cCCC
Confidence 3456777888899999888889988876544444566667889999987743222 2222222111111 0111
Q ss_pred cCcchhhchHHHHhhhhhccccchhhccccccccchhhh-hhhhhhcccccccccccccccCcchhhhhHHHhhhhcCCC
Q 003461 640 VNSKEEKSDAERERSRRLHDRSSQREKDRSDEDNNRTRD-EHKEKILDRDRDREHGLDKVKTPDNKKLLDAKQLIDMIPK 718 (818)
Q Consensus 640 ~~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ip~ 718 (818)
|+. .+.+ .++|.+-..+ ++.+.--++.+++.|+.. +.+ -|..++++||.+||+
T Consensus 520 ~~v--------------------~~~~--~d~Dk~v~~~kk~vp~dyd~n~~~~~~~~---~nd-eK~~~~ksLI~tIP~ 573 (668)
T KOG2253|consen 520 TGV--------------------FRED--DDEDKNVHEKKKLVPLDYDRNQARAHSGE---SND-EKRKRIKSLIETIPT 573 (668)
T ss_pred ccc--------------------cccc--CCcccccchhhhcccccCChhhcccccCC---cch-hHHHHHHhhcccCCc
Confidence 100 0000 1122111111 122211222223333332 222 234479999999999
Q ss_pred CchhhhcccccccccchhhHhhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHH
Q 003461 719 TKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMW 798 (818)
Q Consensus 719 ~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~l~~~l~~~lde~a~~fv~~lW 798 (818)
+|++||+|+|+|+.||..+|+.+|+|||+|||+||||++|++||||||++|..|..|++||++|.++||++|++||+|||
T Consensus 574 ~keeLf~~pidw~~ld~~lm~~rirpwV~KKIiEflGeeE~tLVdFI~s~i~~h~~~q~iL~dl~~ilDEdAE~FV~KmW 653 (668)
T KOG2253|consen 574 EKEELFAYPIDWDELDSILMNERIRPWVNKKIIEFLGEEEDTLVDFICSNIRQHSSPQQILDDLAMILDEDAEVFVVKMW 653 (668)
T ss_pred chHHHhhCcccHHHHhhHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCHHHHHHHHHHHHhcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccc
Q 003461 799 RMLIFEIKKVETGLA 813 (818)
Q Consensus 799 r~life~~~~~~gl~ 813 (818)
||||||+.+++.||+
T Consensus 654 RlLiyel~ar~~g~~ 668 (668)
T KOG2253|consen 654 RLLIYELGARKLGLT 668 (668)
T ss_pred HHHHHHhhhhhccCC
Confidence 999999999999985
No 2
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.75 E-value=1.4e-17 Score=183.98 Aligned_cols=80 Identities=11% Similarity=0.253 Sum_probs=75.1
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
...++|||.+|+..+...+|+.||++||+|+..+|+++..+...+|||||++.+...|.+||..||.++|+|+.|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 35789999999999999999999999999999999999878888999999999999999999999999999999999744
No 3
>PF01480 PWI: PWI domain; InterPro: IPR002483 The PWI domain, named after a highly conserved PWI tri-peptide located within its N-terminal region, is a ~80 amino acid module, which is found either at the N terminus or at the C terminus of eukaryotic proteins involved in pre-mRNA processing []. It is generally found in association with other domains such as RRM and RS. The PWI domain is a RNA/DNA-binding domain that has an equal preference for single- and double-stranded nucleic acids and is likely to have multiple important functions in pre-mRNA processing []. Proteins containing this domain include the SR-related nuclear matrix protein of 160kDa (SRm160) splicing and 3'-end cleavage-stimulatory factor, and the mammalian splicing factor PRP3. The PWI domain is a soluble, globular and independently folded domain which consists of a four-helix bundle, with structured N- and C-terminal elements [].; GO: 0006397 mRNA processing; PDB: 1MP1_A 1X4Q_A.
Probab=99.74 E-value=1.5e-18 Score=151.72 Aligned_cols=68 Identities=46% Similarity=0.808 Sum_probs=61.1
Q ss_pred hhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccC-----CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 003461 740 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHV-----KASQMLELLQTILDDEAEMFVLKMWRMLIFEIKK 807 (818)
Q Consensus 740 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~-----~~~~l~~~l~~~lde~a~~fv~~lWr~life~~~ 807 (818)
++|||||.+||++|||++|++||+||+++|..+. +|+.|+++|++||+++|..||.+||++||+.+..
T Consensus 2 ~~lk~WI~~kl~e~lG~edd~lvdyI~~~l~~~~~~~~~~~~~l~~~L~~fL~~~a~~Fv~~Lw~~l~~~q~~ 74 (77)
T PF01480_consen 2 EKLKPWISKKLEEILGFEDDVLVDYIVALLKSHKSSNEPDPKELQEQLEDFLDEEAEEFVDELWRLLISAQSS 74 (77)
T ss_dssp HHHHHHHHHHHHHHHSS--CHHHHHHHHHCCTT--SSS--HHHHHHHHTTTTGHHCHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999999999999999999887 9999999999999999999999999999988654
No 4
>smart00311 PWI PWI, domain in splicing factors.
Probab=99.71 E-value=2.2e-17 Score=143.19 Aligned_cols=71 Identities=42% Similarity=0.718 Sum_probs=67.6
Q ss_pred hhHhhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 003461 736 HELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIK 806 (818)
Q Consensus 736 ~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~l~~~l~~~lde~a~~fv~~lWr~life~~ 806 (818)
.+..++|+|||+++|++|||++|++||+||+++|++|.+|+.++.+|..+++.+|+.||.+||+||||++.
T Consensus 3 kv~~~~lk~WI~~kv~e~LG~~d~~vvd~i~~~l~~~~~~~~l~~~L~~~~f~da~~Fv~~Lw~~l~~~~~ 73 (74)
T smart00311 3 KLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQHKGPQAKLLQINLTGFEDAEEFVDKLWRLLIFELK 73 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCChHHHHHHHHhhcchhHHHHHHHHHHHHHHhhc
Confidence 45667899999999999999999999999999999999999999999999999999999999999999875
No 5
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=99.60 E-value=2.5e-16 Score=162.77 Aligned_cols=91 Identities=21% Similarity=0.496 Sum_probs=77.9
Q ss_pred chhhhcccccccccchhhHhhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhc--cCCHHHHHHHHHHhhh-HHHHHHHHH
Q 003461 720 KEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD--HVKASQMLELLQTILD-DEAEMFVLK 796 (818)
Q Consensus 720 k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~--~~~~~~l~~~l~~~ld-e~a~~fv~~ 796 (818)
..+-+.-.||...|+ .+.|+|||+++|+|+||+||++||+||+++|.+ ..+|+.||++|++||. .+|..||-.
T Consensus 27 F~~~lekkVDmsKvn----leVlkPWItkrvneilgfEDdVViefvynqLee~k~ldpkkmQiNlTGFLngrnAreFmge 102 (354)
T KOG2146|consen 27 FPACLEKKVDMSKVN----LEVLKPWITKRVNEILGFEDDVVIEFVYNQLEEAKNLDPKKMQINLTGFLNGRNAREFMGE 102 (354)
T ss_pred cHHHHhhhcchhhcc----hhhhhHHHHHHHHHhhccccchhHHHHHHHHhhhcCCCchheeeeeehhcccccHHHHHHH
Confidence 345555666666664 456799999999999999999999999999975 6799999999999999 999999999
Q ss_pred HHHHHHHHHHhhhhcccc
Q 003461 797 MWRMLIFEIKKVETGLAL 814 (818)
Q Consensus 797 lWr~life~~~~~~gl~~ 814 (818)
||-|||-+.-+..+||..
T Consensus 103 LW~LliS~a~~s~~giP~ 120 (354)
T KOG2146|consen 103 LWSLLISEASQSQYGIPA 120 (354)
T ss_pred HHHHHHhhccccccCCch
Confidence 999999877777777753
No 6
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.50 E-value=1.5e-13 Score=134.35 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=78.1
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
...++|||+|||+.+++++|+.+|..||.|.++.++.++.+|+++|||||+|.+.++|..||..||+..|+|+.|.|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 53
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.49 E-value=4.2e-13 Score=148.67 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=77.8
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
..+.+|||+|||+.+++++|..+|+.||.|.+++|+.++.||.++|||||+|.+.++|..||..|||+.|+|+.|.|.|.
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34568999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 347 ~~ 348 (352)
T TIGR01661 347 TN 348 (352)
T ss_pred cC
Confidence 64
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=2.4e-13 Score=126.58 Aligned_cols=83 Identities=22% Similarity=0.391 Sum_probs=79.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
..++|||||||++.+++++|.+||++||.|..+-+-.++.+-.++|||||+|.+.++|..||+.|||+.++.+.|.|+|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35899999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred hhh
Q 003461 179 QAT 181 (818)
Q Consensus 179 ~~~ 181 (818)
..-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 763
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.41 E-value=6.2e-12 Score=139.57 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=78.8
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
....++|||+|||+.+++++|+.+|..||.|.+|+|+.++.+|+++|||||+|.+.++|.+||..|||+.|.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34688999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 184 a~p 186 (346)
T TIGR01659 184 ARP 186 (346)
T ss_pred ccc
Confidence 754
No 10
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=2.5e-12 Score=136.15 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=77.0
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
...+++|+|.|||+...+.+|+.+|.+||.|.+|.|+.+ ...+||||||+|+++++|.+|-..|||..|.||+|.|+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 446889999999999999999999999999999999998 677899999999999999999999999999999999998
Q ss_pred ehhh
Q 003461 178 DQAT 181 (818)
Q Consensus 178 a~~~ 181 (818)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 8765
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.37 E-value=2.6e-12 Score=108.02 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.5
Q ss_pred ceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003461 104 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 174 (818)
Q Consensus 104 LfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~ 174 (818)
|||+|||..+++.+|..+|..||.|..+.+..+ .+|..+|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6899999999999999999999999999999999985
No 12
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=1e-12 Score=135.29 Aligned_cols=88 Identities=17% Similarity=0.292 Sum_probs=81.4
Q ss_pred CCCCCCCCCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 003461 91 LPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 170 (818)
Q Consensus 91 ~P~~~~~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G 170 (818)
+++....++.+|+|||-.||...++.+|.++|-.||.|++.++..|+.|+.+++||||.|.++.++..||..|||+.|+.
T Consensus 275 ~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGM 354 (371)
T KOG0146|consen 275 LPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGM 354 (371)
T ss_pred hhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhh
Confidence 34445557789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEee
Q 003461 171 QELMLKVD 178 (818)
Q Consensus 171 r~L~V~~a 178 (818)
+.|+|.+-
T Consensus 355 KRLKVQLK 362 (371)
T KOG0146|consen 355 KRLKVQLK 362 (371)
T ss_pred hhhhhhhc
Confidence 99999654
No 13
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.35 E-value=2.4e-12 Score=142.56 Aligned_cols=81 Identities=19% Similarity=0.355 Sum_probs=77.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++.+|+.+|..||.|.+|+|+.++.+|+++|||||+|.+.++|.+||..|||..|.|+.|.|.|+.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999875
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 82 ~ 82 (352)
T TIGR01661 82 P 82 (352)
T ss_pred c
Confidence 4
No 14
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=4.6e-12 Score=132.81 Aligned_cols=85 Identities=18% Similarity=0.395 Sum_probs=80.6
Q ss_pred CCCCCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003461 95 TPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 174 (818)
Q Consensus 95 ~~~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~ 174 (818)
...+.|-+||||+-|++.+++..|+..|..||.|..+.||.+..||+++|||||+|.+.-+...|....+|..|+|+.|.
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeh
Q 003461 175 LKVDQ 179 (818)
Q Consensus 175 V~~a~ 179 (818)
|++.-
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 98764
No 15
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=3.1e-11 Score=123.69 Aligned_cols=83 Identities=23% Similarity=0.337 Sum_probs=79.4
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
....++|-|.|||..+++++|+.||.+||.|.++.+.++..||.++|||||+|.+.++|.+||..|||+-++.-.|.|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+.+
T Consensus 266 skP 268 (270)
T KOG0122|consen 266 SKP 268 (270)
T ss_pred cCC
Confidence 865
No 16
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.24 E-value=9e-12 Score=127.23 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=74.7
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
+..-++||||+|+|.++.+.|+..|..||.|+...|+.|+.+|+++|||||+|.+.++|.+|+.. -.-.|+||+..|++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34578999999999999999999999999999999999999999999999999999999999986 55789999999987
Q ss_pred eh
Q 003461 178 DQ 179 (818)
Q Consensus 178 a~ 179 (818)
+-
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 63
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.23 E-value=2.6e-11 Score=141.97 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=77.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+||++.+++++|+.+|+.||.|.+|.++.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 46799999999999999999999999999999999998899999999999999999999999999999999999999876
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 283 ~ 283 (612)
T TIGR01645 283 T 283 (612)
T ss_pred C
Confidence 3
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.22 E-value=4.6e-11 Score=101.43 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=64.8
Q ss_pred ceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003461 104 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 174 (818)
Q Consensus 104 LfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~ 174 (818)
|||+|||++++.++|..+|+.||.|..+.+..+.. |.++|+|||+|.+.++|.+|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999865 99999999999999999999999999999999884
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.21 E-value=2.6e-11 Score=141.94 Aligned_cols=79 Identities=28% Similarity=0.422 Sum_probs=75.8
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
...++|||||||+.+++++|+.+|..||.|.+|.++.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999999974
No 20
>PLN03213 repressor of silencing 3; Provisional
Probab=99.19 E-value=6.2e-11 Score=130.55 Aligned_cols=89 Identities=19% Similarity=0.355 Sum_probs=78.8
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~--esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
....+||||||++.+++++|..+|..||.|.++.|++ .+| +|||||+|.+. .++.+||..|||..++|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 3467999999999999999999999999999999994 578 89999999987 78999999999999999999998
Q ss_pred eehhhHHHHHHHHHhhh
Q 003461 177 VDQATREYLERYVDKKT 193 (818)
Q Consensus 177 ~a~~~kk~le~~k~kk~ 193 (818)
.+. ..||..++..++
T Consensus 84 KAK--P~YLeRLkrERe 98 (759)
T PLN03213 84 KAK--EHYLARLKREWE 98 (759)
T ss_pred ecc--HHHHHHHHHHHH
Confidence 764 568877776443
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=1.6e-10 Score=118.91 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=76.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
....|||-||.+.+++..|-++|..||.|..+++++|..|++.+|||||++.+.++|..||..|||+.++++.|.|.|-.
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 47889999999999999999999999999999999999889999999999999999999999999999999999998864
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.19 E-value=1.3e-10 Score=135.32 Aligned_cols=82 Identities=20% Similarity=0.399 Sum_probs=77.7
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
...++|||||||+.+++++|..+|..||.|..+.++.+..+|.++|||||+|.+.+.|..||..|||+.|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 53
No 23
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.19 E-value=5.9e-11 Score=124.92 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=69.5
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
.++|||||||+.+++.+|+.+|+.||.|.+|.|+.+. ..+|||||+|.++++|..||. |||..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 5799999999999999999999999999999998874 356999999999999999995 89999999999998764
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=1.2e-10 Score=119.89 Aligned_cols=89 Identities=16% Similarity=0.344 Sum_probs=83.1
Q ss_pred CCCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 97 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 97 ~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
.+...++|+|..||.++|.++|+.+|...|.|.+|++++|+.+|.+.|||||.|.++.+|++||..|||+.+..+.|+|.
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 35568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhHHHH
Q 003461 177 VDQATREYL 185 (818)
Q Consensus 177 ~a~~~kk~l 185 (818)
++.+....|
T Consensus 117 yARPSs~~I 125 (360)
T KOG0145|consen 117 YARPSSDSI 125 (360)
T ss_pred eccCChhhh
Confidence 998764433
No 25
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.17 E-value=7.9e-11 Score=130.79 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=75.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G--r~L~V~~ 177 (818)
..++|||+|||+.+++++|+++|..||.|..|.|+.+..+|+++|||||+|.+.++|..||..||++.|.| +.|.|.|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998899999999999999999999999999999876 7899988
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 864
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=1.1e-10 Score=128.06 Aligned_cols=81 Identities=26% Similarity=0.425 Sum_probs=77.5
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~-Gr~L~V~~a 178 (818)
..|.||||.||..+.+++|.-||.+.|.|-.++++.++.+|.++|||||+|++.+.|..||..||+++|. |+.|.|+++
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999999999999996 999999887
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 162 va 163 (506)
T KOG0117|consen 162 VA 163 (506)
T ss_pred ee
Confidence 54
No 27
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.15 E-value=5.5e-11 Score=134.29 Aligned_cols=81 Identities=33% Similarity=0.598 Sum_probs=78.6
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehhh
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 181 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~~ 181 (818)
+.|||||||+.++++.|..+|+..|.|.+++++.|+.||+++|||||+|.+.+.|..|++.|||..++|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred H
Q 003461 182 R 182 (818)
Q Consensus 182 k 182 (818)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.14 E-value=2.5e-10 Score=94.70 Aligned_cols=72 Identities=29% Similarity=0.537 Sum_probs=67.7
Q ss_pred cceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 103 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 103 tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
+|||+|||..++..+|..+|..||.|..+.+..+. |.+.|+|||+|.+...|..|+..|+|..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998874 8899999999999999999999999999999999873
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.14 E-value=1.3e-10 Score=133.52 Aligned_cols=79 Identities=27% Similarity=0.496 Sum_probs=76.6
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
.++|||+|||..+++++|..+|..||.|..|.++.++.+|+++|||||+|.+.+.|..||..|||+.|.|+.|.|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999998889999999999999999999999999999999999999976
No 30
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1e-11 Score=122.03 Aligned_cols=79 Identities=22% Similarity=0.360 Sum_probs=75.4
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.-|||||||+..|+.+|..+|+.||.|+.+.+++|..||+++||||..|++..+..-|+-.|||+.|.|+.|+|+-
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999999973
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.11 E-value=2.9e-10 Score=134.29 Aligned_cols=84 Identities=23% Similarity=0.400 Sum_probs=78.9
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+||+..+++++|+.+|+.||.|.+|+++.+ .+|.++|||||.|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 4678999999999999999999999999999999999 699999999999999999999999999999999999999998
Q ss_pred hhHHH
Q 003461 180 ATREY 184 (818)
Q Consensus 180 ~~kk~ 184 (818)
.....
T Consensus 363 ~k~~~ 367 (562)
T TIGR01628 363 RKEQR 367 (562)
T ss_pred CcHHH
Confidence 65443
No 32
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=3e-10 Score=126.94 Aligned_cols=88 Identities=18% Similarity=0.317 Sum_probs=81.1
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+...|+|.||||.|...+|..+|+.||.|..+.|++. ..|+.+|||||.|.....|..||..|||..|+|++|.|+|
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 445789999999999999999999999999999999977 5889999999999999999999999999999999999999
Q ss_pred ehhhHHHHH
Q 003461 178 DQATREYLE 186 (818)
Q Consensus 178 a~~~kk~le 186 (818)
+.....|-.
T Consensus 193 AV~Kd~ye~ 201 (678)
T KOG0127|consen 193 AVDKDTYED 201 (678)
T ss_pred ecccccccc
Confidence 988765543
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.08 E-value=5.8e-10 Score=92.01 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=66.7
Q ss_pred eccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 106 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 106 VgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
|+|||..++.++|..+|..||.|..+.+..++.++.++|||||+|.+.+.|..|+..|++..++|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999988778999999999999999999999999999999999987
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.8e-10 Score=119.50 Aligned_cols=81 Identities=21% Similarity=0.360 Sum_probs=78.0
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
..-||||.|+..++.+.|++.|.+||.|..++|++|..|+|++|||||.|.+.++|++||..|||.-|++|.|+-+|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 003461 181 T 181 (818)
Q Consensus 181 ~ 181 (818)
+
T Consensus 142 K 142 (321)
T KOG0148|consen 142 K 142 (321)
T ss_pred C
Confidence 3
No 35
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=2.3e-10 Score=112.34 Aligned_cols=76 Identities=29% Similarity=0.455 Sum_probs=69.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..+.||||||+..++..+|..+|..||.|.++-|..+ +.|||||+|+++.+|..|+..|+|..|.|..|.|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4789999999999999999999999999988766554 46999999999999999999999999999999998875
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 3
No 36
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.07 E-value=1.8e-10 Score=115.40 Aligned_cols=81 Identities=20% Similarity=0.276 Sum_probs=77.2
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
.-++|-|-||.+.++.++|+.+|.+||.|..|.|.+++.|+.++|||||-|.+..+|+.|+.+|+|..|+|+.|.|.+|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999998775
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 3
No 37
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.07 E-value=3.8e-10 Score=133.36 Aligned_cols=77 Identities=22% Similarity=0.408 Sum_probs=74.6
Q ss_pred cceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 103 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 103 tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+|||||||+.+++.+|..+|+.||.|.+|+|+++..|++++|||||+|.+.++|.+||..||+..|.|+.|.|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 69999999999999999999999999999999998899999999999999999999999999999999999999874
No 38
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.06 E-value=4.6e-10 Score=116.25 Aligned_cols=80 Identities=26% Similarity=0.457 Sum_probs=76.8
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
.++|||||||..+++++|..+|..||.|..+.+..++.+|.++|||||.|.+.+.|..|+..|+|..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999998653
No 39
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=1e-10 Score=124.91 Aligned_cols=78 Identities=28% Similarity=0.429 Sum_probs=75.6
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
--|+||||.|++.+.++.|+..|..||.|.++.+.+|+.||+++||+||+|+-++.|.-|++.|||..++|+.|+|..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999999974
No 40
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.05 E-value=4.6e-10 Score=131.33 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.5
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~-Gr~L~V~~a 178 (818)
..++|||+|||+.+++++|..+|..||.|..++|+.+ .+|+++|||||+|.+.++|..||..||+..|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 3689999999999999999999999999999999999 79999999999999999999999999999985 788877655
Q ss_pred h
Q 003461 179 Q 179 (818)
Q Consensus 179 ~ 179 (818)
.
T Consensus 136 ~ 136 (578)
T TIGR01648 136 V 136 (578)
T ss_pred c
Confidence 3
No 41
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.04 E-value=6.1e-10 Score=115.68 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=69.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
.+.+|||+||++.+++.+|+.+|+.||.|.+|.|+.+ +...|||||+|.++..+..||. |||..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999887 4556899999999999999995 89999999999987543
No 42
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.04 E-value=6.5e-10 Score=127.83 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=76.1
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
....++|||+|||..+++.+|..+|..||.|..|.++.++.+|+++|||||+|.+.++|.+||. |||..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3457899999999999999999999999999999999998899999999999999999999997 799999999999986
Q ss_pred eh
Q 003461 178 DQ 179 (818)
Q Consensus 178 a~ 179 (818)
+.
T Consensus 165 ~~ 166 (457)
T TIGR01622 165 SQ 166 (457)
T ss_pred cc
Confidence 54
No 43
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.03 E-value=2.1e-10 Score=113.21 Aligned_cols=81 Identities=19% Similarity=0.415 Sum_probs=76.9
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
....|||||||+..+++..|.++|-.+|+|+.+++..++.+.+++|||||+|.+.++|.-||..||.+.|-|+.|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999855
Q ss_pred h
Q 003461 179 Q 179 (818)
Q Consensus 179 ~ 179 (818)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 3
No 44
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.03 E-value=6.9e-11 Score=127.49 Aligned_cols=145 Identities=15% Similarity=0.105 Sum_probs=93.1
Q ss_pred CCccccccccceeeeecCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 003461 1 MIMNSTLFSRCFLQVICSAGDSCHACGAISIMLLMCGLPRYPAPYPSMVRPAFPPRPPGPVGVLPSVARPPVPGIPGVRP 80 (818)
Q Consensus 1 ~~~n~~~isral~~vp~s~G~~P~~~~a~svp~~~Pg~p~~P~P~p~~~~p~~pp~p~~~~g~~P~~~~p~~~g~p~~pp 80 (818)
.|+||||||+||||+|...+++|... |+.+.+....+|.+.+|..-+ + ++.|..+.+..|.. +-.+ |
T Consensus 70 hLtntvfvdraliv~p~~~~~~p~r~-af~~l~~~navprll~pdg~L-p---~~~~lt~~nh~p~a-------ilkt-P 136 (479)
T KOG4676|consen 70 HLTNTVFVDRALIVRPYGDEVIPDRF-AFVELADQNAVPRLLPPDGVL-P---GDRPLTKINHSPNA-------ILKT-P 136 (479)
T ss_pred hhccceeeeeeEEEEecCCCCCccHH-HHHhcCcccccccccCCCCcc-C---CCCccccccCCccc-------eecC-C
Confidence 38999999999999999999999997 665444444444433222111 0 01111111222210 0001 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHH
Q 003461 81 IMPPVVRPVPLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 160 (818)
Q Consensus 81 ~~p~~~~p~~~P~~~~~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al 160 (818)
.+++.+.. .......+|++|++|+..+...++..+|..+|.|....+ ..|-...+|.++|....+...|+
T Consensus 137 ~Lp~~~~A------~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~----ask~~s~~c~~sf~~qts~~hal 206 (479)
T KOG4676|consen 137 ELPPQAAA------KKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHT----ASKSRSSSCSHSFRKQTSSKHAL 206 (479)
T ss_pred CCChHhhh------hhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhh----hccCCCcchhhhHhhhhhHHHHH
Confidence 11222221 222333589999999999999999999999999987765 45556678889999999999999
Q ss_pred HHhCCceeC
Q 003461 161 RLLNKFNID 169 (818)
Q Consensus 161 ~~Lng~~i~ 169 (818)
+. +|..+.
T Consensus 207 r~-~gre~k 214 (479)
T KOG4676|consen 207 RS-HGRERK 214 (479)
T ss_pred Hh-cchhhh
Confidence 85 766653
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.02 E-value=2.4e-09 Score=124.34 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=71.6
Q ss_pred CCCCccceeccCCC-CCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 98 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 98 ~~~~~tLfVgNLp~-~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
..+.++|||+||++ .+++++|..+|+.||.|.+|+++.+. +|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 44678999999998 69999999999999999999998862 5899999999999999999999999999999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
++..
T Consensus 347 ~s~~ 350 (481)
T TIGR01649 347 PSKQ 350 (481)
T ss_pred Eccc
Confidence 8743
No 46
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.1e-09 Score=113.76 Aligned_cols=76 Identities=25% Similarity=0.402 Sum_probs=71.7
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
.+..|+||||||+..++++.|++.|+.||.|..+++..+. ||+||.|.+.++|.+||..+||.+|+|..+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q------GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ------GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc------ceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 4579999999999999999999999999999999998774 9999999999999999999999999999999998
Q ss_pred eh
Q 003461 178 DQ 179 (818)
Q Consensus 178 a~ 179 (818)
..
T Consensus 235 GK 236 (321)
T KOG0148|consen 235 GK 236 (321)
T ss_pred cc
Confidence 74
No 47
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.97 E-value=3.7e-09 Score=88.02 Aligned_cols=74 Identities=27% Similarity=0.486 Sum_probs=68.7
Q ss_pred cceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 103 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 103 tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
+|||+|||..++..+|..+|..||.|..+.+..++ .+.+.|+|||+|.+.+.|..|+..+++..++|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~-~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDK-DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999998875 447889999999999999999999999999999999864
No 48
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.5e-10 Score=114.12 Aligned_cols=83 Identities=22% Similarity=0.396 Sum_probs=79.2
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..+|||||+|...+++..|...|-.||.|..+.++.|-.+++++|||||+|...++|..||..||+.+|-|+.|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 47899999999999999999999999999999999998999999999999999999999999999999999999999887
Q ss_pred hhH
Q 003461 180 ATR 182 (818)
Q Consensus 180 ~~k 182 (818)
+.+
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 653
No 49
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.95 E-value=1.1e-09 Score=103.20 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=77.5
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
....|||.++...+++++|...|+-||.|..+.+..++.||-.+||++|+|++...|..||..|||..|.|.+|.|+|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999984
No 50
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=5.2e-09 Score=114.57 Aligned_cols=87 Identities=21% Similarity=0.311 Sum_probs=77.3
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce-eC--CeEEE
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-ID--GQELM 174 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~-i~--Gr~L~ 174 (818)
+...-++|||.||.++++.+|+.+|.+||.|..|.|++|+.||.++|||||.|.+.++|.+|+.+||+.. |- ...|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 4557799999999999999999999999999999999999999999999999999999999999998764 33 46788
Q ss_pred EEeehhhHHH
Q 003461 175 LKVDQATREY 184 (818)
Q Consensus 175 V~~a~~~kk~ 184 (818)
|++++.-+..
T Consensus 111 vk~Ad~E~er 120 (510)
T KOG0144|consen 111 VKYADGERER 120 (510)
T ss_pred ecccchhhhc
Confidence 8888765444
No 51
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.89 E-value=1.4e-08 Score=91.95 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=72.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..+.|||.|||+.+|.+.+..+|.+||.|..+.|-.. -..+|-|||.|++..+|.+|+..|+|+.+.++.|.|-+-+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4678999999999999999999999999999988554 4557999999999999999999999999999999998876
Q ss_pred hhHH
Q 003461 180 ATRE 183 (818)
Q Consensus 180 ~~kk 183 (818)
..++
T Consensus 94 ~~~~ 97 (124)
T KOG0114|consen 94 PEDA 97 (124)
T ss_pred HHHH
Confidence 6544
No 52
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.1e-09 Score=114.81 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=82.1
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
.+|...|||..|++-+++++|.-||+.||+|.+|.++++..||.+..|+||+|.+.+++++|.-.|.++.|+.+.|.|+|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHH
Q 003461 178 DQATRE 183 (818)
Q Consensus 178 a~~~kk 183 (818)
++...+
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 998766
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.88 E-value=2.4e-09 Score=120.52 Aligned_cols=80 Identities=26% Similarity=0.517 Sum_probs=74.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
|...||||||.+++++.+|+.+|..||.|..+.+..+..||.++|||||+|.+.+.|.+|+..|||++|.|+.|+|..-.
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 34449999999999999999999999999999999997799999999999999999999999999999999999987543
No 54
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.85 E-value=1e-08 Score=119.44 Aligned_cols=75 Identities=24% Similarity=0.320 Sum_probs=61.9
Q ss_pred CCCCCCccceeccCCCCCCHHHHHHHHhhcC------------ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 003461 96 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCG------------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 163 (818)
Q Consensus 96 ~~~~~~~tLfVgNLp~~vte~~L~~lF~~~G------------~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~L 163 (818)
......++|||||||+.+++.+|..+|..|+ .|..+. .++.+|||||+|.+.++|..||. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHHHHhhhhc-C
Confidence 3455688999999999999999999999752 222222 34567999999999999999995 8
Q ss_pred CCceeCCeEEEEEe
Q 003461 164 NKFNIDGQELMLKV 177 (818)
Q Consensus 164 ng~~i~Gr~L~V~~ 177 (818)
||+.|.|+.|.|..
T Consensus 243 ~g~~~~g~~l~v~r 256 (509)
T TIGR01642 243 DSIIYSNVFLKIRR 256 (509)
T ss_pred CCeEeeCceeEecC
Confidence 99999999999863
No 55
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.84 E-value=1.8e-08 Score=104.09 Aligned_cols=92 Identities=17% Similarity=0.349 Sum_probs=80.5
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.....||+|.|...++++.|-..|.+|-.....+++++..||+++|||||.|.++.++.+|++.|||..++.+.|.+.-+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999988655
Q ss_pred hhhHHHHHHHHH
Q 003461 179 QATREYLERYVD 190 (818)
Q Consensus 179 ~~~kk~le~~k~ 190 (818)
......++..+.
T Consensus 268 ~wkeRn~dvv~k 279 (290)
T KOG0226|consen 268 EWKERNLDVVKK 279 (290)
T ss_pred hHHhhhhHHHhH
Confidence 544444444333
No 56
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.83 E-value=8.9e-09 Score=119.69 Aligned_cols=75 Identities=19% Similarity=0.185 Sum_probs=68.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~L--ng~~i~Gr~L~V~~ 177 (818)
|+++|||+|||+.+++.+|..+|+.||.|.+|.++.+ +|||||+|.+.++|..||..| |+..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 4789999999999999999999999999999998754 489999999999999999864 78999999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 75 s~~ 77 (481)
T TIGR01649 75 STS 77 (481)
T ss_pred cCC
Confidence 864
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.81 E-value=1.5e-08 Score=113.59 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=77.2
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-----CC-ceeCCeEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-----NK-FNIDGQEL 173 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~L-----ng-~~i~Gr~L 173 (818)
-..||||.|||+.++++.|...|+.||.|.++.++.++.||.++|.|||.|.+...|..||..- .| +.|+|+.|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~L 370 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLL 370 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEE
Confidence 4689999999999999999999999999999999999999999999999999999999999765 34 78999999
Q ss_pred EEEeehhhHH
Q 003461 174 MLKVDQATRE 183 (818)
Q Consensus 174 ~V~~a~~~kk 183 (818)
.|..+...+.
T Consensus 371 kv~~Av~Rke 380 (678)
T KOG0127|consen 371 KVTLAVTRKE 380 (678)
T ss_pred eeeeccchHH
Confidence 9998876543
No 58
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.80 E-value=1.2e-08 Score=119.54 Aligned_cols=73 Identities=21% Similarity=0.421 Sum_probs=68.1
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhc--CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~--G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..++|||+||++.+++++|+++|+.| |.|..|.++. +||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 9999998754 5999999999999999999999999999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+.+
T Consensus 304 Akp 306 (578)
T TIGR01648 304 AKP 306 (578)
T ss_pred ccC
Confidence 965
No 59
>smart00361 RRM_1 RNA recognition motif.
Probab=98.80 E-value=1.9e-08 Score=86.15 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=54.7
Q ss_pred HHHHHHHHh----hcCceeEEE-EeecCCC--CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 115 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 115 e~~L~~lF~----~~G~V~~~k-i~~d~~t--Gk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
+++|..+|. .||.|.++. ++.++.+ |.++|||||.|.+.++|..|+..|||..++|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 457888888 999999995 6666555 999999999999999999999999999999999986
No 60
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=5.2e-09 Score=114.58 Aligned_cols=81 Identities=20% Similarity=0.382 Sum_probs=74.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee-C--CeEEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-D--GQELMLK 176 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i-~--Gr~L~V~ 176 (818)
..++||||-|+..+++.+++.+|++||.|..|.|.++ ..|.++|||||.|.+.+.|..||..|||..- . ..+|+|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 3778999999999999999999999999999999999 5999999999999999999999999999753 3 5789999
Q ss_pred eehhh
Q 003461 177 VDQAT 181 (818)
Q Consensus 177 ~a~~~ 181 (818)
|++..
T Consensus 202 FADtq 206 (510)
T KOG0144|consen 202 FADTQ 206 (510)
T ss_pred ecccC
Confidence 99865
No 61
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=8.3e-09 Score=102.00 Aligned_cols=78 Identities=18% Similarity=0.340 Sum_probs=70.6
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||||||..+.+.+|..||.+||.|..|.+... ..+.+||||+|+++.+|..||..-+|+.++|..|.|.|..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4789999999999999999999999999999987443 3456899999999999999999999999999999999875
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 82 g 82 (241)
T KOG0105|consen 82 G 82 (241)
T ss_pred C
Confidence 4
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.78 E-value=7.3e-09 Score=108.70 Aligned_cols=70 Identities=19% Similarity=0.407 Sum_probs=66.5
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..|||||||..+++..|+.+|..||+|..|.|+.+ ||||..++...+..||+.|||+.|+|..|+|.-+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecc
Confidence 47999999999999999999999999999999987 99999999999999999999999999999997553
No 63
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.76 E-value=3.8e-08 Score=80.25 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=50.5
Q ss_pred HHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 118 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 118 L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
|..+|++||.|..+.+.... .++|||+|.+.++|..|+..|||..++|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999886652 689999999999999999999999999999999986
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=1.1e-08 Score=109.66 Aligned_cols=95 Identities=26% Similarity=0.468 Sum_probs=84.8
Q ss_pred CCCCCCCCCCCCCC-------CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHH
Q 003461 84 PVVRPVPLPTVTPA-------EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGV 156 (818)
Q Consensus 84 ~~~~p~~~P~~~~~-------~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA 156 (818)
.+++|++.|+..+. ...-.+|||..+.+..++++|+.+|..||.|++|.+.+++..+.++||||++|.+..+-
T Consensus 186 KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 186 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 44566666666554 34578999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEee
Q 003461 157 LRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 157 ~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
..||..||-+.++|..|+|.-+
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HHHhhhcchhhcccceEecccc
Confidence 9999999999999999999744
No 65
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=3.1e-08 Score=109.12 Aligned_cols=76 Identities=16% Similarity=0.346 Sum_probs=71.4
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
......|||.||+.++|++.|+.+|+.||.|..|+.++| ||||.|.+.++|.+|+..+||++|+|..|.|.+
T Consensus 256 ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 256 MSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred hhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 345778999999999999999999999999999998876 999999999999999999999999999999999
Q ss_pred ehhh
Q 003461 178 DQAT 181 (818)
Q Consensus 178 a~~~ 181 (818)
+.+.
T Consensus 328 AKP~ 331 (506)
T KOG0117|consen 328 AKPV 331 (506)
T ss_pred cCCh
Confidence 9875
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.64 E-value=2.7e-08 Score=104.49 Aligned_cols=80 Identities=23% Similarity=0.407 Sum_probs=73.7
Q ss_pred CCCCCCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003461 94 VTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 173 (818)
Q Consensus 94 ~~~~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L 173 (818)
+.......++||||||++.|+..+|+..|.+||.|..|+|+.+ |+||.|.-.++|..||+.|||.+|.|+.+
T Consensus 71 SksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 71 SKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred ccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccccccee
Confidence 3444567899999999999999999999999999999999987 99999999999999999999999999999
Q ss_pred EEEeehhh
Q 003461 174 MLKVDQAT 181 (818)
Q Consensus 174 ~V~~a~~~ 181 (818)
+|.++...
T Consensus 143 ~vq~stsr 150 (346)
T KOG0109|consen 143 HVQLSTSR 150 (346)
T ss_pred eeeeeccc
Confidence 99988653
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.62 E-value=8.2e-08 Score=96.95 Aligned_cols=83 Identities=25% Similarity=0.331 Sum_probs=75.8
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhc-CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~-G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
....-+||+.||..+.+.++..+|..| |.|..+.+.+++.||.++|||||+|++.+-|.-|-..||++-|+|+.|.|.|
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 346789999999999999999999988 7788888889999999999999999999999999999999999999999988
Q ss_pred ehhh
Q 003461 178 DQAT 181 (818)
Q Consensus 178 a~~~ 181 (818)
=.+-
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6654
No 68
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.57 E-value=7.3e-08 Score=95.50 Aligned_cols=81 Identities=23% Similarity=0.421 Sum_probs=74.6
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~-ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.+||||||.+.+++..|..+|+.||.+... ++++++.||.++|||||.|.+.+.+.+||..|||..++.+++.|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 346899999999999999999999999988664 6788888999999999999999999999999999999999999998
Q ss_pred eh
Q 003461 178 DQ 179 (818)
Q Consensus 178 a~ 179 (818)
+-
T Consensus 174 a~ 175 (203)
T KOG0131|consen 174 AF 175 (203)
T ss_pred EE
Confidence 74
No 69
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=2.1e-07 Score=96.61 Aligned_cols=81 Identities=21% Similarity=0.356 Sum_probs=74.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 176 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~---Gr~L~V~ 176 (818)
..++||||-|...-++++++.+|..||.|.+|.+.+.+ .|.++||+||.|.+..+|..||..|||-.-. ...|+|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 58899999999999999999999999999999999994 9999999999999999999999999997543 4679999
Q ss_pred eehhh
Q 003461 177 VDQAT 181 (818)
Q Consensus 177 ~a~~~ 181 (818)
|++..
T Consensus 97 ~ADTd 101 (371)
T KOG0146|consen 97 FADTD 101 (371)
T ss_pred eccch
Confidence 98864
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.50 E-value=2.5e-07 Score=103.74 Aligned_cols=74 Identities=26% Similarity=0.478 Sum_probs=70.2
Q ss_pred ceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 104 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 104 LfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
|||.||++.++...|..+|+.||.|++|++..+ ..| ++|| ||.|.+.++|.+||..|||..+.|++|.|.....
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~-~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATD-ENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEc-CCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 999999999999999999999999999999999 466 9999 9999999999999999999999999999986654
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.49 E-value=3e-07 Score=100.94 Aligned_cols=78 Identities=26% Similarity=0.417 Sum_probs=73.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHh-hcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~-~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
-.+.+||.|||+.+...+|+.||. +.|.|..|.+..| .+||++|||.|+|.+++.+.+|++.||.+.+.|+.|+|+=+
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 356699999999999999999996 8899999999999 69999999999999999999999999999999999999743
No 72
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.47 E-value=2.5e-07 Score=94.82 Aligned_cols=84 Identities=15% Similarity=0.319 Sum_probs=74.5
Q ss_pred CccceeccCCCCCCHHHHHH----HHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 101 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~----lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
..||||.||+..+..++|+. +|+.||.|..|.... +.+.+|-|||.|.+.+.|..|+..|+|+.+-|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999998877 999999999886643 78999999999999999999999999999999999999
Q ss_pred eehhhHHHHHH
Q 003461 177 VDQATREYLER 187 (818)
Q Consensus 177 ~a~~~kk~le~ 187 (818)
++......+..
T Consensus 86 yA~s~sdii~~ 96 (221)
T KOG4206|consen 86 YAKSDSDIIAQ 96 (221)
T ss_pred cccCccchhhc
Confidence 98776555543
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=7.5e-07 Score=103.29 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=70.4
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCC----CCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG----TPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tG----k~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
.++|||.||++.++...|..+|...|.|.++.|...+ .+ .+.|||||+|.++++|.+|++.|+|+.|+|+.|.|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkk-d~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKK-DPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccc-cccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 4459999999999999999999999999999887764 33 245999999999999999999999999999999999
Q ss_pred eeh
Q 003461 177 VDQ 179 (818)
Q Consensus 177 ~a~ 179 (818)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 886
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=3.3e-07 Score=106.19 Aligned_cols=91 Identities=23% Similarity=0.371 Sum_probs=79.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..+.|+|.|||+.++-..++.||..||.|.+|.|+.-...+.++|||||+|-++.+|.+|+.+|.++.|-|+.|++.|+.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 46799999999999999999999999999999987764567789999999999999999999999999999999999986
Q ss_pred hhHHHHHHHHHh
Q 003461 180 ATREYLERYVDK 191 (818)
Q Consensus 180 ~~kk~le~~k~k 191 (818)
.-.. ++....+
T Consensus 692 ~d~~-~e~~r~r 702 (725)
T KOG0110|consen 692 SDNT-MEALRER 702 (725)
T ss_pred cchH-HHHHHHH
Confidence 5433 5555443
No 75
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.36 E-value=6e-07 Score=104.61 Aligned_cols=75 Identities=13% Similarity=0.237 Sum_probs=70.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
-++|||||+|+..+++.+|..+|..||.|.++.++.. +|||||.+....+|.+||..|+.+.+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3789999999999999999999999999999988765 4899999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 494 g 494 (894)
T KOG0132|consen 494 G 494 (894)
T ss_pred c
Confidence 4
No 76
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.34 E-value=3.3e-06 Score=86.17 Aligned_cols=82 Identities=15% Similarity=0.208 Sum_probs=67.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeec-CCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 174 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d-~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~---Gr~L~ 174 (818)
...+||||.+||..+..-+|..+|..|-.-..+.+-.. ....-.+-+|||+|.+...|..|+..|||+.|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34899999999999999999999999876666555332 111123479999999999999999999999998 88999
Q ss_pred EEeehh
Q 003461 175 LKVDQA 180 (818)
Q Consensus 175 V~~a~~ 180 (818)
+.++..
T Consensus 112 iElAKS 117 (284)
T KOG1457|consen 112 IELAKS 117 (284)
T ss_pred eeehhc
Confidence 998864
No 77
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.28 E-value=2e-06 Score=99.42 Aligned_cols=84 Identities=25% Similarity=0.373 Sum_probs=75.1
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecC---CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 174 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~---~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~ 174 (818)
++..++||||||++.+++.+|...|..||+|.+++|++.+ .......||||.|.+..+|.+|+..|+|..|.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4557899999999999999999999999999999998875 2245668999999999999999999999999999999
Q ss_pred EEeehhh
Q 003461 175 LKVDQAT 181 (818)
Q Consensus 175 V~~a~~~ 181 (818)
+.|+.+.
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9998543
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.25 E-value=2.4e-06 Score=92.00 Aligned_cols=80 Identities=25% Similarity=0.392 Sum_probs=73.4
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCcee--------EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 170 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~--------~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G 170 (818)
...+.|||.|||..+|.+.+..+|++||.|. .|++..+ ..|+.+|-|.|.|.-.+++.-||.+|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 3467799999999999999999999999886 3788888 579999999999999999999999999999999
Q ss_pred eEEEEEeeh
Q 003461 171 QELMLKVDQ 179 (818)
Q Consensus 171 r~L~V~~a~ 179 (818)
+.|+|..|.
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999998665
No 79
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.25 E-value=1.4e-06 Score=95.78 Aligned_cols=76 Identities=20% Similarity=0.263 Sum_probs=69.5
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
....|+|||.|||+++|...|+.-|..||.|.++.|+- .|+++| .|.|.+++.|++|+.+|||..|+|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34689999999999999999999999999999998843 688887 8999999999999999999999999999986
Q ss_pred e
Q 003461 178 D 178 (818)
Q Consensus 178 a 178 (818)
+
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 80
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=2.2e-06 Score=96.22 Aligned_cols=73 Identities=21% Similarity=0.388 Sum_probs=68.7
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
..|||| +.+|+.+|..+|+.+|.|++++++++. | +.|||||.|.++.+|.+||..||...|.|+.++|.|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 358999 899999999999999999999999995 4 999999999999999999999999999999999998864
No 81
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.22 E-value=2.5e-06 Score=91.94 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=71.3
Q ss_pred CCCCCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHH-HHhCCceeCCeEE
Q 003461 95 TPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL-RLLNKFNIDGQEL 173 (818)
Q Consensus 95 ~~~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al-~~Lng~~i~Gr~L 173 (818)
.+.+..-++||||+|...+++.+|+..|.+||.|.++.++... ++|||+|.+..+|+.|. +.+|.+.|+|+.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 3446668899999999999999999999999999999887653 69999999999999888 5778899999999
Q ss_pred EEEeehh
Q 003461 174 MLKVDQA 180 (818)
Q Consensus 174 ~V~~a~~ 180 (818)
.|.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999876
No 82
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.21 E-value=8.2e-07 Score=96.90 Aligned_cols=81 Identities=23% Similarity=0.420 Sum_probs=73.2
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++||||+|++.++++.|+..|..||.|..|.++.++.+|.++|||||+|.++..+..+|.. .-+.|+|+.|.++-+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 588999999999999999999999999999999999999999999999999999999988874 5677889888887665
Q ss_pred hh
Q 003461 180 AT 181 (818)
Q Consensus 180 ~~ 181 (818)
+.
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 43
No 83
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=2.9e-06 Score=97.11 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=77.7
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
...++.+|||+||..+++..+.+++..||.+....++.+..+|-++||+|++|.++.-...|+..|||..+++++|+|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 44588999999999999999999999999999999999988999999999999999999999999999999999999986
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+-.
T Consensus 366 A~~ 368 (500)
T KOG0120|consen 366 AIV 368 (500)
T ss_pred hhc
Confidence 643
No 84
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.11 E-value=7.7e-06 Score=86.27 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=74.4
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
...+++|+|.||++.|.+.+|+++|..||.+..+-+.++ .+|.+.|.|-|.|...++|.+|+..|||+.++|+.+.+.+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344689999999999999999999999999999999898 4999999999999999999999999999999999998875
Q ss_pred eh
Q 003461 178 DQ 179 (818)
Q Consensus 178 a~ 179 (818)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 53
No 85
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.10 E-value=4.5e-06 Score=94.40 Aligned_cols=75 Identities=27% Similarity=0.427 Sum_probs=66.3
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
..+|||+|||++++..+|.++|..||.|....|..-.-.+++.+||||+|.+..++..||.+ +-+.|++++|.|.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEE
Confidence 55699999999999999999999999999888765423466669999999999999999997 7899999999995
No 86
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.08 E-value=4.1e-06 Score=88.26 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=74.8
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.+.+||||+.+.++.+.+...|..||.|..+.+..+...|.++||+||+|.+...+..|+. |||..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4568899999999999999999999999999999999998888999999999999999999999 899999999999964
Q ss_pred e
Q 003461 178 D 178 (818)
Q Consensus 178 a 178 (818)
-
T Consensus 177 ~ 177 (231)
T KOG4209|consen 177 K 177 (231)
T ss_pred e
Confidence 3
No 87
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.04 E-value=1.8e-05 Score=92.46 Aligned_cols=10 Identities=10% Similarity=-0.240 Sum_probs=3.9
Q ss_pred cCCCCCCCcc
Q 003461 17 CSAGDSCHAC 26 (818)
Q Consensus 17 ~s~G~~P~~~ 26 (818)
...|.+|..+
T Consensus 522 ~~~~~iP~PP 531 (1102)
T KOG1924|consen 522 PIDGGIPPPP 531 (1102)
T ss_pred CCCCCCCCCC
Confidence 3334444333
No 88
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.01 E-value=3.7e-06 Score=85.65 Aligned_cols=79 Identities=14% Similarity=0.141 Sum_probs=72.1
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
-.+||||+|+...|+++.|.++|-..|.|..+.|..+ ..++.+ |+||.|.+.-++.-|+.+|||..+.+..|.|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3789999999999999999999999999999999888 467777 99999999999999999999999999999887644
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 86 G 86 (267)
T KOG4454|consen 86 G 86 (267)
T ss_pred C
Confidence 3
No 89
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.01 E-value=5.3e-06 Score=90.62 Aligned_cols=81 Identities=20% Similarity=0.372 Sum_probs=75.1
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
....||||+||..+++.+|+..|.+||.|..+.++.+..+..++|||||+|.+.+++.+++. .+.+.|+|+.+.|+.+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 46699999999999999999999999999999999999999999999999999999999887 48899999999998776
Q ss_pred hh
Q 003461 180 AT 181 (818)
Q Consensus 180 ~~ 181 (818)
+.
T Consensus 175 pk 176 (311)
T KOG4205|consen 175 PK 176 (311)
T ss_pred ch
Confidence 53
No 90
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.80 E-value=0.00036 Score=75.41 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=59.4
Q ss_pred ceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCH-HHHHHHHHHhCCceeCCeEEEEEeehhhH
Q 003461 104 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA-EGVLRALRLLNKFNIDGQELMLKVDQATR 182 (818)
Q Consensus 104 LfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~-esA~~Al~~Lng~~i~Gr~L~V~~a~~~k 182 (818)
+.|+--.+.+++.++..++.+.-.|.+..|.+. .++.+.| .|.+. +....||.++. +-+|.-++.|+
T Consensus 348 r~~~p~~~plSeAEFEdiM~RNraiSSSAIsrA-vsdASaG----Dy~~AiETllTAI~lIK-------qSrv~~DdRCr 415 (498)
T KOG4849|consen 348 RHVNPQMFPLSEAEFEDIMTRNRAISSSAISRA-VSDASAG----DYKGAIETLLTAIQLIK-------QSRVGHDDRCR 415 (498)
T ss_pred ccCCCCCccchHHHHHHHHhhcchhhHHHHHHH-hcccccc----cchhHHHHHHHHHHHHH-------hhccccchHHH
Confidence 445555667889999999999999988877665 5777777 77776 67778888764 55677788888
Q ss_pred HHHHHHHHhh
Q 003461 183 EYLERYVDKK 192 (818)
Q Consensus 183 k~le~~k~kk 192 (818)
.++..++.+.
T Consensus 416 vLissL~dcL 425 (498)
T KOG4849|consen 416 VLISSLEDCL 425 (498)
T ss_pred HHHHHHHHHH
Confidence 8888887766
No 91
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.79 E-value=0.00063 Score=79.27 Aligned_cols=33 Identities=36% Similarity=0.672 Sum_probs=26.2
Q ss_pred CccccCCcCCCCCCcchhcccCCCCcccCCCChH
Q 003461 577 KRTAVPSVFHVEDDDDADKDKKMRPLVPIDYSTE 610 (818)
Q Consensus 577 kr~~v~~vf~~~dde~~~~~~~kr~Lvpl~y~~e 610 (818)
+.+.+.+||+.++|.|.+--.++ +||||+|+..
T Consensus 515 kk~~~~~v~~~~~d~Dk~v~~~k-k~vp~dyd~n 547 (668)
T KOG2253|consen 515 KKLPETGVFREDDDEDKNVHEKK-KLVPLDYDRN 547 (668)
T ss_pred ccCCCcccccccCCcccccchhh-hcccccCChh
Confidence 45789999999988874544444 9999999985
No 92
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.78 E-value=5.8e-05 Score=86.23 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=65.4
Q ss_pred CCCCCccceeccCCCCCCHHHHHHHHh-hcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 003461 97 AEKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQE 172 (818)
Q Consensus 97 ~~~~~~tLfVgNLp~~vte~~L~~lF~-~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i---~Gr~ 172 (818)
.....+.|||.||-.-+|.-+|+.+|. .||.|..+ +.| +.+..|||.|.+.++|...+.+|||+.+ +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 345688999999999999999999999 56666665 344 4667999999999999999999999975 5888
Q ss_pred EEEEeehh
Q 003461 173 LMLKVDQA 180 (818)
Q Consensus 173 L~V~~a~~ 180 (818)
|.|.|+..
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 99988754
No 93
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=2.6e-05 Score=88.82 Aligned_cols=73 Identities=22% Similarity=0.392 Sum_probs=65.2
Q ss_pred CCCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003461 97 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 174 (818)
Q Consensus 97 ~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~ 174 (818)
...+..+|+|-|||..|+.+.|..+|+.||.|..+.. |-...|.+||+|.+.-.|.+|+..||+..|.|+.|.
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456889999999999999999999999999998654 445568999999999999999999999999988877
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.76 E-value=2.1e-05 Score=81.40 Aligned_cols=71 Identities=25% Similarity=0.421 Sum_probs=64.9
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
..||||+||+.+.+.+|..||..||.|..+.+.. |||||.|.+..+|..||..|||.+|.|-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 4689999999999999999999999999987744 6999999999999999999999999999988887753
No 95
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.73 E-value=0.00019 Score=65.71 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=67.1
Q ss_pred ccceeccCCCCCCHHHHHHHHhh--cCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELML 175 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~--~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~----Gr~L~V 175 (818)
+||-|.|||...+..+|.+++.. .|...-+.++.|..++-+.|||||.|.++..|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988864 366677778888888999999999999999999999999999875 566677
Q ss_pred Eeeh
Q 003461 176 KVDQ 179 (818)
Q Consensus 176 ~~a~ 179 (818)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7663
No 96
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.38 E-value=0.00093 Score=73.83 Aligned_cols=75 Identities=15% Similarity=0.253 Sum_probs=67.6
Q ss_pred CccceeccCCC-CCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 101 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 101 ~~tLfVgNLp~-~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
.+.|.|.||.. .+|.+.|..+|+.||.|.+++|..+. +--|.|.|.+...|.-|+.+|+|+.|.|+.|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 67889999876 68999999999999999999998873 1579999999999999999999999999999998875
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
-
T Consensus 372 H 372 (492)
T KOG1190|consen 372 H 372 (492)
T ss_pred C
Confidence 3
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.35 E-value=0.00077 Score=69.28 Aligned_cols=65 Identities=17% Similarity=0.261 Sum_probs=54.6
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 168 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i 168 (818)
-+.||||.||...|+++.|+.+|+.|.....++|... .| -+.+|++|++.+.|..|+..|.|..|
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 4669999999999999999999999987766665221 23 35899999999999999999998776
No 98
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.23 E-value=0.00025 Score=77.50 Aligned_cols=83 Identities=14% Similarity=0.229 Sum_probs=74.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 170 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~--------~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G 170 (818)
...-+|||-+||..++...|..+|.+||.|.. +.|.+++.|++++|=|.|+|.++..|+.||..+++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 35779999999999999999999999998853 5577888999999999999999999999999999999999
Q ss_pred eEEEEEeehhh
Q 003461 171 QELMLKVDQAT 181 (818)
Q Consensus 171 r~L~V~~a~~~ 181 (818)
..|+|.++..+
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99988766543
No 99
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.23 E-value=0.00025 Score=80.89 Aligned_cols=83 Identities=18% Similarity=0.296 Sum_probs=77.1
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
....+|||+--|+..++.-+|..||+.+|+|..+.++.+..++.++|.|||+|.+.+++..||. |.|..+.|..|.|..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 4458899999999999999999999999999999999999999999999999999999999996 799999999999987
Q ss_pred ehhh
Q 003461 178 DQAT 181 (818)
Q Consensus 178 a~~~ 181 (818)
..+-
T Consensus 255 sEae 258 (549)
T KOG0147|consen 255 SEAE 258 (549)
T ss_pred cHHH
Confidence 7653
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.17 E-value=0.0072 Score=66.30 Aligned_cols=77 Identities=22% Similarity=0.257 Sum_probs=67.7
Q ss_pred CCCCccceeccCCCC-CCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 98 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~-vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
..+.+.+.|-+|... +.-+.|..+|..||.|..+++++.. .|-|.|++.+...+++||..||+..+-|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 446888999999874 5667999999999999999998863 2689999999999999999999999999999998
Q ss_pred eeh
Q 003461 177 VDQ 179 (818)
Q Consensus 177 ~a~ 179 (818)
++.
T Consensus 359 ~Sk 361 (494)
T KOG1456|consen 359 VSK 361 (494)
T ss_pred ecc
Confidence 764
No 101
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.02 E-value=0.0016 Score=57.63 Aligned_cols=69 Identities=19% Similarity=0.296 Sum_probs=48.3
Q ss_pred ccceeccCCCCCCHH----HHHHHHhhcC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 102 TKVYVGKIAPTADSD----FVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 102 ~tLfVgNLp~~vte~----~L~~lF~~~G-~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
..|||.|||...+.. -|++|+..|| +|..+ + .+-|++-|.+.+.|.+|..-|+|-.+-|.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999998876 5567777887 66665 1 2689999999999999999999999999999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8754
No 102
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.01 E-value=0.014 Score=68.51 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=66.2
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCce-eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V-~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
++.|-|.|+|+.++-++|..+|.-|-.+ -+|.+-++ ..|++.|-|.|-|++.++|.+|..-|++..|..+.+.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4478899999999999999999998755 34555455 7899999999999999999999999999999999988864
No 103
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.00 E-value=0.0011 Score=71.89 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=70.2
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G--~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
.....+|||||.|++|+.+|.+.+...| .+..+++.-++.+|.++||++|...+..++...+.+|....|+|..-+|-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456899999999999999999998888 56778888888999999999999999999999999999999999887664
Q ss_pred ee
Q 003461 177 VD 178 (818)
Q Consensus 177 ~a 178 (818)
-+
T Consensus 158 ~~ 159 (498)
T KOG4849|consen 158 SY 159 (498)
T ss_pred cc
Confidence 33
No 104
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.90 E-value=0.00047 Score=72.15 Aligned_cols=87 Identities=25% Similarity=0.274 Sum_probs=66.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCC--------CCCcc----EEEEEeCCHHHHHHHHHHhCCce
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKG----FGFCEFESAEGVLRALRLLNKFN 167 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~t--------Gk~kG----fgFVeF~s~esA~~Al~~Lng~~ 167 (818)
....||+++||+.+....|++||+.||.|-++.+.....+ |.+.+ =|.|+|.+...|.++...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3568999999999999999999999999999987654333 33332 27899999999999999999999
Q ss_pred eCCeEEE-EEeehhhHHHHH
Q 003461 168 IDGQELM-LKVDQATREYLE 186 (818)
Q Consensus 168 i~Gr~L~-V~~a~~~kk~le 186 (818)
|+|++-. +..+....+||-
T Consensus 153 Iggkk~S~~~~dlWNmKYLp 172 (278)
T KOG3152|consen 153 IGGKKKSPFRDDLWNMKYLP 172 (278)
T ss_pred cCCCCCCchHHhhhhhhhcc
Confidence 9987643 222333344543
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.60 E-value=0.0011 Score=72.33 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=73.4
Q ss_pred CCCccce-eccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 99 KPQTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 99 ~~~~tLf-VgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
.+..++| |+|+++.++.++|...|..||.|..+++..++.+|.++|||||.|........++.. ....+.++.+.|..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 3456666 999999999999999999999999999999999999999999999999999999887 78889999999976
Q ss_pred ehhh
Q 003461 178 DQAT 181 (818)
Q Consensus 178 a~~~ 181 (818)
+...
T Consensus 261 ~~~~ 264 (285)
T KOG4210|consen 261 DEPR 264 (285)
T ss_pred CCCC
Confidence 6543
No 106
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.59 E-value=0.0051 Score=69.74 Aligned_cols=75 Identities=21% Similarity=0.367 Sum_probs=63.4
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..-|-+.+|||.||+.+|..+|+.|+ |..+.+.+ .+|+..|=|||+|.+.+++..||.. +...++.+-|.|--+.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 45566789999999999999999996 55655544 5899999999999999999999995 8888888999986543
No 107
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.0082 Score=68.89 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=62.1
Q ss_pred CCccceeccCCCCCCH------HHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeE
Q 003461 100 PQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQE 172 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte------~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~-Gr~ 172 (818)
-...|+|-|+|---.. .-|..+|+++|+|+...++.+. .|+.+||.|++|.+..+|..|+..|||+.|+ .+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e-~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE-EGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc-cCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4667888888853221 2456889999999999998884 5669999999999999999999999999997 566
Q ss_pred EEEE
Q 003461 173 LMLK 176 (818)
Q Consensus 173 L~V~ 176 (818)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6665
No 108
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.44 E-value=0.011 Score=69.28 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=67.0
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~-~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
...|||-.||..++...+..+|...-.|.. |.|.+.+ +++..+-|||.|..+..+..|+..-+.+.++.+.|.|.-.
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 678999999999999999999988777776 6666664 8999999999999999999999877888999999999743
No 109
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.34 E-value=0.0087 Score=55.73 Aligned_cols=85 Identities=19% Similarity=0.349 Sum_probs=52.3
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC-----CceeCCeEEEEE
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-----KFNIDGQELMLK 176 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln-----g~~i~Gr~L~V~ 176 (818)
+.|+|.+++..++-.+|+.+|+.||.|..|.+..+- .-|||-|.+++.|..|+..+. ++.|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 568899999999999999999999999999886542 489999999999999997663 446667666666
Q ss_pred e--ehhhHHHHHHHHHhh
Q 003461 177 V--DQATREYLERYVDKK 192 (818)
Q Consensus 177 ~--a~~~kk~le~~k~kk 192 (818)
+ ...-+.|++...+.+
T Consensus 76 vLeGeeE~~Yw~ki~e~~ 93 (105)
T PF08777_consen 76 VLEGEEEEEYWKKIIEDR 93 (105)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHH
Confidence 5 334456666666533
No 110
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.26 E-value=0.011 Score=64.13 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=67.2
Q ss_pred CccceeccCCCCCCHHH----H--HHHHhhcCceeEEEEeecC-CCCCCcc-E-EEEEeCCHHHHHHHHHHhCCceeCCe
Q 003461 101 QTKVYVGKIAPTADSDF----V--LSVLKVCGTVKSWKRAQYP-SNGTPKG-F-GFCEFESAEGVLRALRLLNKFNIDGQ 171 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~----L--~~lF~~~G~V~~~ki~~d~-~tGk~kG-f-gFVeF~s~esA~~Al~~Lng~~i~Gr 171 (818)
..-+||-+||+.+..+. | .++|..||+|..+.+-... ......+ + .||+|.+.++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 55689999999887664 2 4799999999988765432 1111123 3 39999999999999999999999999
Q ss_pred EEEEEeehhhHHHHHHHHH
Q 003461 172 ELMLKVDQATREYLERYVD 190 (818)
Q Consensus 172 ~L~V~~a~~~kk~le~~k~ 190 (818)
.|+..+. +-+|...|-.
T Consensus 194 ~lkatYG--TTKYCtsYLR 210 (480)
T COG5175 194 VLKATYG--TTKYCTSYLR 210 (480)
T ss_pred eEeeecC--chHHHHHHHc
Confidence 9998765 4567777764
No 111
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.19 E-value=0.019 Score=59.61 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=66.8
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 176 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~-Gr~L~V~ 176 (818)
.++..++|+.|||..++.+.|..+|..|+....+.++... .+.+||+|.+...+..|...|.|..|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4568899999999999999999999999999998887652 379999999999999999999999887 7777777
Q ss_pred eeh
Q 003461 177 VDQ 179 (818)
Q Consensus 177 ~a~ 179 (818)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 653
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.015 Score=66.46 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=59.6
Q ss_pred CCCccceeccCCCCCCHHHHHHHHh-hcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 162 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~-~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~ 162 (818)
.+.+|||||+||.-++...|..||. .||.|..+.|=+|+.=+-++|-|-|+|.+..+..+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4688999999999999999999998 899999999988877788999999999999999999974
No 113
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=95.99 E-value=0.0039 Score=64.91 Aligned_cols=68 Identities=19% Similarity=0.325 Sum_probs=61.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
..+.++|-|++..+...+|...|..+|.+....+ ..+|+||.|...+++.+||..|+|..+.|+.|.|
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 4788999999999999999999999999944322 3479999999999999999999999999999999
No 114
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.89 E-value=0.006 Score=68.03 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeec---CCC--CCC--------ccEEEEEeCCHH
Q 003461 88 PVPLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PSN--GTP--------KGFGFCEFESAE 154 (818)
Q Consensus 88 p~~~P~~~~~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d---~~t--Gk~--------kGfgFVeF~s~e 154 (818)
..++|......-+.+||.+-|||..-.-+.|..||+.||.|..|.|+.. +.+ |.+ +-|+||+|...+
T Consensus 218 isPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~ 297 (484)
T KOG1855|consen 218 ISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVE 297 (484)
T ss_pred cCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhH
Confidence 3345555555668999999999999888999999999999999998765 322 222 457999999999
Q ss_pred HHHHHHHHhCCce
Q 003461 155 GVLRALRLLNKFN 167 (818)
Q Consensus 155 sA~~Al~~Lng~~ 167 (818)
.|.+|..+||...
T Consensus 298 ~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 298 AARKARELLNPEQ 310 (484)
T ss_pred HHHHHHHhhchhh
Confidence 9999999886544
No 115
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.57 E-value=0.03 Score=63.71 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=62.5
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~-~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
+...|=+.+||+.|++.+|.++|+-.-.|.. +.++.+ ..|++.|=+||.|++.+.|+.||.. |...|+.+-|.|.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence 4667888999999999999999987655544 445555 4788999999999999999999986 7788888888886
No 116
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.43 E-value=0.054 Score=53.10 Aligned_cols=72 Identities=19% Similarity=0.299 Sum_probs=52.2
Q ss_pred CCCCccceeccCC------CCCCHH---HHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 003461 98 EKPQTKVYVGKIA------PTADSD---FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 168 (818)
Q Consensus 98 ~~~~~tLfVgNLp------~~vte~---~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i 168 (818)
+++..||.|.-+. ....+. .|.+.|..||.|.-++++.+ .-+|+|.+-.+|.+|+. |+|..|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEE
Confidence 3456677776655 123332 66777888999988777554 67999999999999999 699999
Q ss_pred CCeEEEEEee
Q 003461 169 DGQELMLKVD 178 (818)
Q Consensus 169 ~Gr~L~V~~a 178 (818)
+|+.|.|.+-
T Consensus 95 ~g~~l~i~LK 104 (146)
T PF08952_consen 95 NGRTLKIRLK 104 (146)
T ss_dssp TTEEEEEEE-
T ss_pred CCEEEEEEeC
Confidence 9999999754
No 117
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.20 E-value=0.034 Score=61.91 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=66.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEe
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMLKV 177 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr-~L~V~~ 177 (818)
+|+.+|...|||..+++++|+.+|...|..+..... -++.+.++++.+.+.+.|..|+-.+|.+.+++. .|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 567799999999999999999999998877554432 245567999999999999999999999999855 899999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 864
No 118
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.07 E-value=0.06 Score=49.77 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=51.8
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecC-------CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-------SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-E 172 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~-------~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr-~ 172 (818)
.+-|.|=+.|+. .-..+...|++||.|....-+... .......+-.|.|.++.+|.+||+. ||..|+|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 445777788877 445777889999999877411110 0112336899999999999999995 99999885 5
Q ss_pred EEEEeehhh
Q 003461 173 LMLKVDQAT 181 (818)
Q Consensus 173 L~V~~a~~~ 181 (818)
+-|.+++..
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 557777543
No 119
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=94.78 E-value=0.076 Score=58.18 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=61.7
Q ss_pred CCCccceeccCCC----CCC-------HHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 003461 99 KPQTKVYVGKIAP----TAD-------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 167 (818)
Q Consensus 99 ~~~~tLfVgNLp~----~vt-------e~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~ 167 (818)
...+||.+.|+=. ..+ .++|.+-..+||.|.++.|.-. -+.|.+-|.|.+.+.|..||+.|+|-.
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3478899988743 222 1245555789999999987533 356899999999999999999999999
Q ss_pred eCCeEEEEEeehhh
Q 003461 168 IDGQELMLKVDQAT 181 (818)
Q Consensus 168 i~Gr~L~V~~a~~~ 181 (818)
|+|++|...+....
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999998876654
No 120
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.47 E-value=0.078 Score=58.64 Aligned_cols=77 Identities=17% Similarity=0.135 Sum_probs=65.2
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCc-eeE--EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGT-VKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~-V~~--~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
...|-+.+||+.++-++|..+|..|-. |.. +.++.+ ..|.+.|-+||.|.+.+.|..|....|.....++.|.|.-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 556788999999999999999998864 333 678787 6899999999999999999999988888777788888854
Q ss_pred e
Q 003461 178 D 178 (818)
Q Consensus 178 a 178 (818)
+
T Consensus 359 ~ 359 (508)
T KOG1365|consen 359 C 359 (508)
T ss_pred c
Confidence 4
No 121
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=94.07 E-value=0.021 Score=68.68 Aligned_cols=80 Identities=14% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
....|||.|.|+.+|.+.|+.++..+|.+.+..++.. ..|+++|.+||.|.+..++.+++....+..+.-+.+.|.+++
T Consensus 735 gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 735 GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 3668999999999999999999999999999998888 589999999999999999999998888887877777887766
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
+
T Consensus 814 p 814 (881)
T KOG0128|consen 814 P 814 (881)
T ss_pred C
Confidence 5
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.02 E-value=0.095 Score=63.52 Aligned_cols=82 Identities=13% Similarity=0.264 Sum_probs=69.5
Q ss_pred CCCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEE
Q 003461 97 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELM 174 (818)
Q Consensus 97 ~~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G--r~L~ 174 (818)
...+.+.+|||+|..++....|...|..||.|..+.+-. | ..|++|.|++...+..|+..|-|..|+| +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g--q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G--QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C--CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345688999999999999999999999999999876532 2 3599999999999999999999999984 7799
Q ss_pred EEeehhhHHH
Q 003461 175 LKVDQATREY 184 (818)
Q Consensus 175 V~~a~~~kk~ 184 (818)
|.|+...-++
T Consensus 525 vdla~~~~~~ 534 (975)
T KOG0112|consen 525 VDLASPPGAT 534 (975)
T ss_pred cccccCCCCC
Confidence 9988655333
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=93.96 E-value=0.082 Score=58.66 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=60.4
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCC---CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE-EEE
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL-MLK 176 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~---tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L-~V~ 176 (818)
...|-|.||.+.++.++++.||...|.|..+.++-+.. -....-.|||.|.+..++..|-. |.++.|-++.| ++-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 34788999999999999999999999999998876431 23345689999999999988766 45555445554 444
Q ss_pred eehhhH
Q 003461 177 VDQATR 182 (818)
Q Consensus 177 ~a~~~k 182 (818)
+.+.+.
T Consensus 86 ~~~~~~ 91 (479)
T KOG4676|consen 86 YGDEVI 91 (479)
T ss_pred cCCCCC
Confidence 555443
No 124
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=93.67 E-value=0.16 Score=59.17 Aligned_cols=63 Identities=21% Similarity=0.212 Sum_probs=51.2
Q ss_pred HHHHHhhcCceeEEEEeec-C--CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 118 VLSVLKVCGTVKSWKRAQY-P--SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 118 L~~lF~~~G~V~~~ki~~d-~--~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
++.-+++||.|.+|.+.+. . ...-..|--||+|.+.+++.+|+..|+|..|+|+.++..+-..
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 3344567899999998776 2 2334557789999999999999999999999999999887654
No 125
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.66 E-value=0.54 Score=54.25 Aligned_cols=79 Identities=22% Similarity=0.333 Sum_probs=54.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCce-eEEEEeecCCC-CCCcc---EEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSN-GTPKG---FGFCEFESAEGVLRALRLLNKFNIDGQEL 173 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V-~~~ki~~d~~t-Gk~kG---fgFVeF~s~esA~~Al~~Lng~~i~Gr~L 173 (818)
.-.+.||||+||+.+++..|...|..||.+ +.|-.-..... --++| |.|..|++..++...|.... .+...+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EGEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hcccce
Confidence 347899999999999999999999999976 45542111001 12345 99999999988877664432 244455
Q ss_pred EEEeehh
Q 003461 174 MLKVDQA 180 (818)
Q Consensus 174 ~V~~a~~ 180 (818)
.++++..
T Consensus 334 yf~vss~ 340 (520)
T KOG0129|consen 334 YFKVSSP 340 (520)
T ss_pred EEEEecC
Confidence 5554443
No 126
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=93.37 E-value=0.15 Score=41.56 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=40.7
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHH
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 160 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al 160 (818)
+.|-|.+.+....+..| ..|..||.|....+. ....+.|+.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 56778888877665444 478889999998774 22359999999999999985
No 127
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=93.32 E-value=0.015 Score=69.74 Aligned_cols=70 Identities=14% Similarity=0.203 Sum_probs=60.3
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 169 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~ 169 (818)
..+++||.||+..+...+|...|..+|.+..+.+......|..+|+||+.|.+++.+.+||....+..++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 4678999999999999999999999998887777655578999999999999999999999865555444
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=92.46 E-value=0.18 Score=56.50 Aligned_cols=77 Identities=16% Similarity=0.245 Sum_probs=59.6
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEeeh
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-NIDGQELMLKVDQ 179 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~-ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~-~i~Gr~L~V~~a~ 179 (818)
..+|+|||++.++..+|..+|...-...+- .++.. ||+||.+.+..-|.+|++.|+|. ++.|+.+.|..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~-------gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS-------GYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec-------ceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 468999999999999999999754211111 12222 89999999999999999999985 6889999998776
Q ss_pred hhHHHH
Q 003461 180 ATREYL 185 (818)
Q Consensus 180 ~~kk~l 185 (818)
..+...
T Consensus 75 ~kkqrs 80 (584)
T KOG2193|consen 75 PKKQRS 80 (584)
T ss_pred hHHHHh
Confidence 654433
No 129
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=91.05 E-value=0.88 Score=46.19 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=57.1
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 169 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~ 169 (818)
....|.|.+||+..+..+|+..+...|.|....+.++ |+|.|+|-..++..-||+.|....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 4678999999999999999999999999999999888 69999999999999999998876554
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=91.05 E-value=0.19 Score=61.10 Aligned_cols=78 Identities=9% Similarity=0.075 Sum_probs=65.5
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
...|||+|||...+++..|+..|..+|.|..+.|-+. .-+.-..||||.|.+...+..|+..+.+..|....+.+.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP-~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP-HIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccC-CCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 4789999999999999999999999999999887554 24555579999999999999999888888877556655554
No 131
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=90.79 E-value=0.21 Score=52.86 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=57.1
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 164 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln 164 (818)
...|||.||+..++.+.|.+-|+.||.|....++.| ..|++.+=|+|.|...-.+..|++.++
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhc
Confidence 378999999999999999999999999988877777 689999999999999999999998773
No 132
>PTZ00121 MAEBL; Provisional
Probab=90.77 E-value=11 Score=48.86 Aligned_cols=14 Identities=7% Similarity=-0.137 Sum_probs=6.2
Q ss_pred EeCCHHHHHHHHHH
Q 003461 149 EFESAEGVLRALRL 162 (818)
Q Consensus 149 eF~s~esA~~Al~~ 162 (818)
.+.+..+...|++.
T Consensus 939 ~~~~~~~f~eC~e~ 952 (2084)
T PTZ00121 939 NEVGINKFGGCLEY 952 (2084)
T ss_pred ccccchhHHHHHHH
Confidence 33344444455543
No 133
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.02 E-value=0.87 Score=49.13 Aligned_cols=63 Identities=21% Similarity=0.112 Sum_probs=50.6
Q ss_pred HHHHHHhhcCceeEEEEeecCCCCCC-ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 117 FVLSVLKVCGTVKSWKRAQYPSNGTP-KGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 117 ~L~~lF~~~G~V~~~ki~~d~~tGk~-kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
.+..-..+||.|..|-|.-.+..-.. .---||+|...++|.+|+--|||..|+|+.+...|-+
T Consensus 302 e~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 302 ETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 56677789999999987766422222 2347999999999999999999999999999887764
No 134
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=89.68 E-value=3.4 Score=52.55 Aligned_cols=21 Identities=14% Similarity=0.242 Sum_probs=10.7
Q ss_pred CCCCchhhhcccccccccchh
Q 003461 716 IPKTKEELFSYEINWAVYDKH 736 (818)
Q Consensus 716 ip~~k~~lf~~~i~w~~~~~~ 736 (818)
|..-|..++.-.++=..|.+.
T Consensus 874 ~~~~~~~~~~~~~~~~~~~~~ 894 (1021)
T PTZ00266 874 INAKKASIYNNTCDEGTLSKK 894 (1021)
T ss_pred hhhhhhhhhhhcccccccccc
Confidence 444555555555555555443
No 135
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=89.55 E-value=0.84 Score=50.68 Aligned_cols=70 Identities=23% Similarity=0.162 Sum_probs=57.8
Q ss_pred ccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEeehhh
Q 003461 107 GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKVDQAT 181 (818)
Q Consensus 107 gNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G--r~L~V~~a~~~ 181 (818)
-|--+.+|-+-|..+...+|+|.++.|... +| --|.|+|++.+.|.+|...|||..|-. -.|+|.++.++
T Consensus 128 lNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 128 LNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred ecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 344567899999999999999999988764 44 379999999999999999999998753 56777777665
No 136
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=89.10 E-value=0.34 Score=53.76 Aligned_cols=79 Identities=23% Similarity=0.252 Sum_probs=59.9
Q ss_pred CccceeccCCCCCCHHHHHHHHhhc----CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVC----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~----G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
...|-+.+||++|+..++..+|..- |.+..+-+++. .+|+..|-+||.|...+.|..||.. |...|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~i-------- 230 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNI-------- 230 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHH--------
Confidence 3456678999999999999999621 24445666665 4899999999999999999999975 43332
Q ss_pred eehhhHHHHHHHHHhhh
Q 003461 177 VDQATREYLERYVDKKT 193 (818)
Q Consensus 177 ~a~~~kk~le~~k~kk~ 193 (818)
-+.||+-|+....
T Consensus 231 ----GqRYIElFRSTaa 243 (508)
T KOG1365|consen 231 ----GQRYIELFRSTAA 243 (508)
T ss_pred ----hHHHHHHHHHhHH
Confidence 2678888877553
No 137
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.87 E-value=5 Score=43.78 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=48.1
Q ss_pred ceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE-EEE
Q 003461 104 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL-MLK 176 (818)
Q Consensus 104 LfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L-~V~ 176 (818)
|-|-+.|+... ..|..+|.+||.|+.... +....|-+|.|.+.-.|.+||.. ||..|+|..+ -|+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVk 265 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVK 265 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeec------CCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeee
Confidence 44446665543 467788999999987633 33446999999999999999995 9999987543 344
No 138
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.54 E-value=0.26 Score=54.17 Aligned_cols=87 Identities=20% Similarity=0.310 Sum_probs=64.7
Q ss_pred CccceeccCCCCCCHH-HH--HHHHhhcCceeEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003461 101 QTKVYVGKIAPTADSD-FV--LSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 173 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~-~L--~~lF~~~G~V~~~ki~~d~~----tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L 173 (818)
..-+||-+|+..+..+ .| ...|..||.|..+.+..++. .|.. .-++|+|...++|..||...+|+.++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 4568899999877665 34 36888999999998877652 1222 238999999999999999999999999996
Q ss_pred EEEeehhhHHHHHHHHH
Q 003461 174 MLKVDQATREYLERYVD 190 (818)
Q Consensus 174 ~V~~a~~~kk~le~~k~ 190 (818)
+..+ .+-+|-..|..
T Consensus 156 ka~~--gttkycs~~l~ 170 (327)
T KOG2068|consen 156 KASL--GTTKYCSFYLR 170 (327)
T ss_pred HHhh--CCCcchhHHhh
Confidence 5544 34456555554
No 139
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.27 E-value=1.7 Score=52.96 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=63.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLK 176 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~--Gr~L~V~ 176 (818)
+-..+.++.|.+-..+..-|..+|..||.|.+....++- ..+.|+|.+.++|..|+.+|+|.++- |-+.+|.
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 345667778888888999999999999999887655552 58999999999999999999998754 7788888
Q ss_pred eehhh
Q 003461 177 VDQAT 181 (818)
Q Consensus 177 ~a~~~ 181 (818)
++...
T Consensus 370 ~ak~~ 374 (1007)
T KOG4574|consen 370 FAKTL 374 (1007)
T ss_pred ecccc
Confidence 87654
No 140
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.03 E-value=2.4 Score=41.55 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=55.7
Q ss_pred CCCCccceeccCCCCCCHH----HHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003461 98 EKPQTKVYVGKIAPTADSD----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 173 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~----~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L 173 (818)
++|-.||.|.=|..++... .+...++.||.|.++.+. |+ --|.|+|.+..+|-.|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr--qsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR--QSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CC--ceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 4567788888766655432 455667899999998653 22 4789999999999999999876 5568888
Q ss_pred EEEeeh
Q 003461 174 MLKVDQ 179 (818)
Q Consensus 174 ~V~~a~ 179 (818)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 888764
No 141
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=83.33 E-value=0.7 Score=49.11 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=48.9
Q ss_pred hcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehhh
Q 003461 124 VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 181 (818)
Q Consensus 124 ~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~~ 181 (818)
+||.|..+.|..+ ..--..|-.+|.|...++|.+|+..||+-.++|++|...+..-+
T Consensus 92 kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 92 KYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred Hhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 8999999877666 34456788999999999999999999999999999998877543
No 142
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=82.46 E-value=3.4 Score=37.07 Aligned_cols=54 Identities=7% Similarity=0.088 Sum_probs=41.8
Q ss_pred cceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 003461 103 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 164 (818)
Q Consensus 103 tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln 164 (818)
-||--..|......+|.++|+.||.| .+.++.+ .-|||.....+.|..++..++
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I-~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQI-YVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCE-EEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcE-EEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 45555599999999999999999988 5666666 489999999999999998875
No 143
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=82.21 E-value=4.8 Score=34.07 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=44.0
Q ss_pred CccceeccCCCCCCHHHHHHHHhhc---CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 163 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~---G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~L 163 (818)
+..|+|.++. .++-.+|+.+|.-| .....+.++.| .-|-|.|.+...|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD-------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD-------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC-------CcEEEEECCHHHHHHHHHcC
Confidence 5678999986 57778899999888 23557788887 36789999999999999764
No 144
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=81.59 E-value=3.5 Score=42.33 Aligned_cols=61 Identities=20% Similarity=0.139 Sum_probs=45.6
Q ss_pred HHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEeehhh
Q 003461 115 SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKVDQAT 181 (818)
Q Consensus 115 e~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln--g~~i~Gr~L~V~~a~~~ 181 (818)
...|+.+|..|+.+..|.....- +=..|.|.+.+.|..|...|+ +..+.|..|+|-|+..+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 36889999999999998776541 457899999999999999999 99999999999888543
No 145
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=79.91 E-value=1.6 Score=50.09 Aligned_cols=75 Identities=7% Similarity=0.001 Sum_probs=60.5
Q ss_pred CCccceeccCCCCCCH-HHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADS-DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte-~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
..+.|-+.-+|++... ..|...|.+||.|..|.+-.. --.|.|+|.+..+|-.|.. .++..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 3556666667777655 599999999999999987443 2478999999999988877 4999999999999998
Q ss_pred hhh
Q 003461 179 QAT 181 (818)
Q Consensus 179 ~~~ 181 (818)
...
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 753
No 146
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=79.55 E-value=2.3 Score=43.28 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=51.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhh-cCceeEEEEee---cCCCCC--CccEEEEEeCCHHHHHHHHHHhCCceeC---C
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQ---YPSNGT--PKGFGFCEFESAEGVLRALRLLNKFNID---G 170 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~-~G~V~~~ki~~---d~~tGk--~kGfgFVeF~s~esA~~Al~~Lng~~i~---G 170 (818)
....|.|.+||+++|++.+...++. +|....|..+. +..+.+ ..+-|||.|.+.+.+..-+..++|+.|- |
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4668999999999999998887776 66664454433 111112 2356899999999999999999998764 2
Q ss_pred --eEEEEEeehh
Q 003461 171 --QELMLKVDQA 180 (818)
Q Consensus 171 --r~L~V~~a~~ 180 (818)
....|.+|..
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3456777765
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=79.27 E-value=4.8 Score=47.16 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=44.8
Q ss_pred cCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEEEeehh--hHHHHHHHHH
Q 003461 125 CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELMLKVDQA--TREYLERYVD 190 (818)
Q Consensus 125 ~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~----Gr~L~V~~a~~--~kk~le~~k~ 190 (818)
.|.-..+.++.|-.+-.+.|||||.|.+++.+..+.+++||+... .+.+.+.||.- +...+..++.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~~Li~hFqn 484 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKEALIEHFQN 484 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchHHHHHHhhc
Confidence 344445556666555667899999999999999999999998643 34455666532 2334444444
No 148
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=78.80 E-value=15 Score=43.05 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCcCCcccCCCCCcccccch
Q 003461 274 NPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRN 311 (818)
Q Consensus 274 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 311 (818)
+|.++..+..+.+|+.+....+.++.+.++++++++..
T Consensus 548 kpGpsnRsR~tksgsRG~ertvvmDkskg~pviSvKts 585 (940)
T KOG4661|consen 548 KPGPSNRSRSTKSGSRGKERTVVMDKSKGDPVISVKTS 585 (940)
T ss_pred CCCccccccccccCCCccceeeeeccCCCCceeeeccc
Confidence 56667777778888888888888888888887776553
No 149
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=77.81 E-value=3.2 Score=30.32 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 003461 774 KASQMLELLQTILDDEAEMFVLKM 797 (818)
Q Consensus 774 ~~~~l~~~l~~~lde~a~~fv~~l 797 (818)
+-..|++++..+|+.+|+.||...
T Consensus 4 ~~D~lLDeId~vLe~NAe~FV~~f 27 (33)
T TIGR03687 4 GVDDLLDEIDGVLESNAEEFVRGF 27 (33)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 346899999999999999999764
No 150
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=76.95 E-value=6.9 Score=47.53 Aligned_cols=6 Identities=17% Similarity=0.069 Sum_probs=2.3
Q ss_pred HHHHHh
Q 003461 118 VLSVLK 123 (818)
Q Consensus 118 L~~lF~ 123 (818)
+++.|.
T Consensus 406 ~ee~Fk 411 (830)
T KOG1923|consen 406 FEEQFK 411 (830)
T ss_pred HHHHHH
Confidence 333443
No 151
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.92 E-value=8.7 Score=33.28 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHhhcCc-----eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 111 PTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 111 ~~vte~~L~~lF~~~G~-----V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
..++..+|..+|...+. |-.+.+..+ |.||+-... .|..++..|++..+.|+.|.|..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 36777788888876643 445555443 999988764 788899999999999999999754
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=76.38 E-value=2.1 Score=47.01 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=67.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
...+++|||++.+.+.+.+...++..+|.+..+.+........++||+.+.|...+.+..||...-.+.+.+..+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35789999999999999999999999998888877665568899999999999999999999864445666666665555
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 166 ~~ 167 (285)
T KOG4210|consen 166 TR 167 (285)
T ss_pred cc
Confidence 43
No 153
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=71.62 E-value=25 Score=33.23 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=47.5
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 169 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G-~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~ 169 (818)
...+.+...|..++.++|..+.+.+- .|..++|+++ ..-++-...+.|.+...|..-...+||..++
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird--~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRD--GTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeC--CCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 33344444555555567766666554 5667778776 2335667899999999999999999999876
No 154
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=71.12 E-value=4 Score=51.13 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=22.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW 131 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ 131 (818)
....+++|-.+--.+..+.|+.+.+.||...++
T Consensus 70 ~kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~ 102 (2365)
T COG5178 70 NKAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSV 102 (2365)
T ss_pred hhhhheeeeccCCCCCHHHHHhhhCccccchhh
Confidence 345667776666677777787777777755544
No 155
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=70.60 E-value=22 Score=32.78 Aligned_cols=74 Identities=14% Similarity=0.303 Sum_probs=55.2
Q ss_pred HhhhhhhhHHHHHHhhhCCchh--HHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhc
Q 003461 738 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEIKKVETG 811 (818)
Q Consensus 738 ~~~~~~pwi~kki~e~lG~ee~--~lv~~i~~~l~~~~~~~~l~~~l~~~lde~a~~fv~~lWr~life~~~~~~g 811 (818)
+.+.||--|.+|...+=.+-|+ .+-+||+=++....++..++.+|...+|.=...++...-....|...+...|
T Consensus 8 ~~~nLK~iVaEkL~~l~NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF~ale~Lq~G 83 (107)
T PF11517_consen 8 ITENLKVIVAEKLKTLPNFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAFFALEALQQG 83 (107)
T ss_dssp HHHHHHHHHHHHHTTSTT--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999998887555554 4889999999999999999999999999777777777777777777776665
No 156
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=65.52 E-value=15 Score=39.37 Aligned_cols=72 Identities=13% Similarity=0.105 Sum_probs=45.6
Q ss_pred CCccceeccCCCCCCHHH-H--HHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 003461 100 PQTKVYVGKIAPTADSDF-V--LSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 172 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~-L--~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~ 172 (818)
....+|++|+-..+..+- | ...|+-+-.+...+++.+ ..+...+|+|+.|........+-..-++..++-..
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~ 169 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPP 169 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcc
Confidence 344556666655555442 3 667777777777777777 47888899999998766555554433444444333
No 157
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=64.68 E-value=19 Score=42.35 Aligned_cols=42 Identities=17% Similarity=0.100 Sum_probs=18.9
Q ss_pred HHHHHhhcCceeEEEEeecCCCCCCccEEE--EEeCCHHHHHHHH
Q 003461 118 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGF--CEFESAEGVLRAL 160 (818)
Q Consensus 118 L~~lF~~~G~V~~~ki~~d~~tGk~kGfgF--VeF~s~esA~~Al 160 (818)
|.-+|-..-....|.++.. ..|.+.|... ++--+-.+|..||
T Consensus 294 IeGVfP~~tpd~RcRvvNA-Ll~g~~GL~L~p~ec~sW~~avaaL 337 (582)
T PF03276_consen 294 IEGVFPTTTPDLRCRVVNA-LLGGHLGLALTPNECGSWASAVAAL 337 (582)
T ss_pred hcccccCCCccHHHHHHHH-HhcCCCccccCccccccHHHHHHHH
Confidence 3444443344455555444 2344444432 3334445555555
No 158
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=58.91 E-value=1.6e+02 Score=35.81 Aligned_cols=7 Identities=29% Similarity=-0.178 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 003461 154 EGVLRAL 160 (818)
Q Consensus 154 esA~~Al 160 (818)
..++.|+
T Consensus 83 ~~~L~ae 89 (811)
T KOG4364|consen 83 MVALLAE 89 (811)
T ss_pred ccchhhh
Confidence 3344444
No 159
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=57.78 E-value=45 Score=38.92 Aligned_cols=25 Identities=8% Similarity=0.162 Sum_probs=14.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKV 124 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~ 124 (818)
+..++|-.-=+-.++...|..+|..
T Consensus 305 ~~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 305 PCATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred ccchhhhccCcceecHHHHHHHHHH
Confidence 3444544333334666788899964
No 160
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=55.49 E-value=20 Score=42.26 Aligned_cols=69 Identities=23% Similarity=0.290 Sum_probs=55.3
Q ss_pred CCccceeccCCCCCCHHHHHHHHh--hcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLK--VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELML 175 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~--~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln--g~~i~Gr~L~V 175 (818)
.-|.|++.-||.++..+.++.||. .|-++.+|.+..+ .-=||+|++..+|..|...|. -..|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-------~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-------DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-------CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 467889999999999999999997 5889999988766 235899999999999987663 23566666653
No 161
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=50.59 E-value=18 Score=43.42 Aligned_cols=63 Identities=14% Similarity=0.359 Sum_probs=51.5
Q ss_pred hhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003461 740 ERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 802 (818)
Q Consensus 740 ~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~l~~~l~~~lde~a~~fv~~lWr~li 802 (818)
.+++--+.....+|+|-.-+.+++.|+..|........=+.+|.-||.++.+.||..||-.|-
T Consensus 22 ~k~k~~~kddl~~~~g~~t~~~~~~~f~~~~r~~~~~~ea~e~~~~~ed~~~~~~a~~~~~~~ 84 (681)
T KOG3702|consen 22 AKLKEMVKDDLKEYMGDYTDDILVEYFIVLLRNGRRKEEANELKIFLEDDSDSFVAWLWDHLA 84 (681)
T ss_pred hhhhhhhhhhHHhhcCCchhhhhhHHHHHHHhccccccchhhhhhhhhhhhhhhhhhhhhhHH
Confidence 578888999999999998666666666666655555455559999999999999999999887
No 162
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.29 E-value=55 Score=38.99 Aligned_cols=78 Identities=12% Similarity=0.098 Sum_probs=57.3
Q ss_pred CCCCccceeccCCCC-CCHHHHHHHHhhc----CceeEEEEeecC----------CCCC---------------------
Q 003461 98 EKPQTKVYVGKIAPT-ADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 141 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~-vte~~L~~lF~~~----G~V~~~ki~~d~----------~tGk--------------------- 141 (818)
+...++|-|.|+.|. +...+|.-+|+.| |.|.+|+|+..- ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 445889999999995 6667888888866 689998765310 1222
Q ss_pred ---------------C-ccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 142 ---------------P-KGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 142 ---------------~-kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
. .-||.|+|.+...|......+.|+++...-..+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 1 237889999999999999999999988444333
No 163
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=48.07 E-value=7.1 Score=33.69 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=15.0
Q ss_pred CCHHHHHHHHHHhhhHHHHHHHHH
Q 003461 773 VKASQMLELLQTILDDEAEMFVLK 796 (818)
Q Consensus 773 ~~~~~l~~~l~~~lde~a~~fv~~ 796 (818)
.+-..||++|..||+.+|+.||..
T Consensus 39 ~~vD~lLDeID~vLE~NAeeFVr~ 62 (69)
T PF05639_consen 39 DDVDDLLDEIDSVLETNAEEFVRS 62 (69)
T ss_dssp CCHHHHHHHHTTTSSSC-------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999999999999975
No 164
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=46.29 E-value=50 Score=38.18 Aligned_cols=67 Identities=7% Similarity=-0.017 Sum_probs=55.9
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 169 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G-~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~ 169 (818)
.+.|+|-.+|-.++-.+|..|+..|- .|..++++++. --++=...+.|.+..+|..-...+||..|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 88999999999999999998887654 67889999962 223335789999999999999999999876
No 165
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=43.27 E-value=4.1e+02 Score=27.83 Aligned_cols=9 Identities=11% Similarity=0.146 Sum_probs=3.9
Q ss_pred HHHHhhhhc
Q 003461 490 QRDALKLLS 498 (818)
Q Consensus 490 ~~~~~~~~~ 498 (818)
+..+..|..
T Consensus 179 q~~~~~FF~ 187 (216)
T PF11600_consen 179 QARITSFFK 187 (216)
T ss_pred HHHHHHHhC
Confidence 333445543
No 166
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=37.95 E-value=1.1e+02 Score=26.39 Aligned_cols=55 Identities=9% Similarity=0.007 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 112 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 112 ~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
.++-.+|+..|.+|+-. .|..+ .| | =||.|.+..+|.+|....||..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d-~t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDD-RT----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEec-CC----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 45667899999988622 22233 22 2 379999999999999999999888777654
No 167
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=36.45 E-value=1.4e+02 Score=38.67 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=23.1
Q ss_pred chhhhhHHHhhhh-cCCCCchhhhcccccccccchhhHhhhhhhh
Q 003461 702 DNKKLLDAKQLID-MIPKTKEELFSYEINWAVYDKHELHERMRPW 745 (818)
Q Consensus 702 ~~~~~~~~~~l~~-~ip~~k~~lf~~~i~w~~~~~~~~~~~~~pw 745 (818)
|.|+.+=-|.+.. +=|..=.-+.+---+|++=.-..|..-|+-|
T Consensus 841 edk~~lWekR~yc~~~p~aLPlVL~Sap~W~~~~l~~~y~lL~~W 885 (1639)
T KOG0905|consen 841 EDKDLLWEKRLYCTNEPNALPLVLASAPSWDWGNLMDVYQLLHQW 885 (1639)
T ss_pred hhHHHHHHHhhhhcCCCchhHHHHhcCCCCchhhHHHHHHHHHhc
Confidence 3444444455543 3455555566666677765444444445555
No 168
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=36.25 E-value=69 Score=28.54 Aligned_cols=48 Identities=19% Similarity=0.305 Sum_probs=39.0
Q ss_pred HHHHHhhhCCchhHHHHHHHHhhhccC---CHHHHHHHHHHhhhHHHHHHHH
Q 003461 747 SKKITEFLGEEETTLVDYIVSSTQDHV---KASQMLELLQTILDDEAEMFVL 795 (818)
Q Consensus 747 ~kki~e~lG~ee~~lv~~i~~~l~~~~---~~~~l~~~l~~~lde~a~~fv~ 795 (818)
..||..+|| .|++.-++++..|+... +-..|+..|.++|..++..=..
T Consensus 9 ~~Kvd~iL~-~dp~~Ke~l~~aLk~Ya~~k~vd~l~~aL~~~L~~e~~~~Ll 59 (80)
T cd07354 9 SRKVDAILG-DDPVKKEQVFAALKQYAADKNVDCLVWALCGLLQTEAHKKLL 59 (80)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHhCcHHHHHHH
Confidence 578999999 68999999999997543 6778999999999988765433
No 169
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=35.24 E-value=41 Score=39.04 Aligned_cols=61 Identities=20% Similarity=0.410 Sum_probs=43.3
Q ss_pred hhhhhHHHHHHhhhCCchhHHHHHHHHhhhccC----CHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 003461 741 RMRPWISKKITEFLGEEETTLVDYIVSSTQDHV----KASQMLELLQTILDDEAEMFVLKMWRML 801 (818)
Q Consensus 741 ~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~----~~~~l~~~l~~~lde~a~~fv~~lWr~l 801 (818)
.|+-|...-..=+---.-..|-.||+-.|+... =+..+++.|..||-+++..||.||+..|
T Consensus 8 ~Lk~wlsd~lePi~Dadpsala~yvlal~kkdkse~elk~~~~~ql~vfl~~et~pfv~K~fda~ 72 (526)
T KOG2135|consen 8 ALKDWLSDALEPICDADPSALAKYVLALLKKDKSEKELKALCIEQLDVFLRQETIPFVDKLFDAL 72 (526)
T ss_pred HHHHHHhhhccCcccCChHHHHHHHHHHhhcCCCchhhhhhhHHhcchhhhcccchHHHHHHHhh
Confidence 456666543332222233458899999998654 3466789999999999999999998655
No 170
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=35.17 E-value=2e+02 Score=34.01 Aligned_cols=12 Identities=8% Similarity=-0.036 Sum_probs=4.6
Q ss_pred CCCCCCCccccc
Q 003461 18 SAGDSCHACGAI 29 (818)
Q Consensus 18 s~G~~P~~~~a~ 29 (818)
++|.++-.+...
T Consensus 347 a~g~~~~pa~gR 358 (569)
T KOG3671|consen 347 AGGPIPLPAQGR 358 (569)
T ss_pred CCCCCCCCcccc
Confidence 344333333333
No 171
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=34.88 E-value=9.8 Score=44.66 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=53.9
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 169 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~ 169 (818)
...|+|||.||+++++-..|..++..+-.+..+.+..........-++.|+|.---...-|+.+||+..+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 34789999999999999999999988877777766544333445568899998776666677777777543
No 172
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=34.59 E-value=1.3e+02 Score=36.89 Aligned_cols=46 Identities=13% Similarity=0.227 Sum_probs=22.5
Q ss_pred ceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEe
Q 003461 104 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEF 150 (818)
Q Consensus 104 LfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF 150 (818)
..+|+|+ .|+.....--.++|+.|..++----.....+.|-||..|
T Consensus 179 ~~fgr~~-~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~ 224 (793)
T KOG1881|consen 179 CLFGRLG-GCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIY 224 (793)
T ss_pred EEecccC-CCccccccCcccccceeeeccCCCCCccccCCCCceEEe
Confidence 3456666 555544444456677776654211100112345566666
No 173
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=34.19 E-value=10 Score=39.73 Aligned_cols=75 Identities=16% Similarity=0.348 Sum_probs=62.0
Q ss_pred CCccceecc----CCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 100 PQTKVYVGK----IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 100 ~~~tLfVgN----Lp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
...+++.|| |...++.+.+...|+..|.+..+.+.++ .+|.++.|+|+.|.-....-.++....++.+--+++.+
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 467788888 7788999999999999999999998888 46999999999999888888888877777665544444
No 174
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.73 E-value=2.9e+02 Score=30.28 Aligned_cols=6 Identities=17% Similarity=0.528 Sum_probs=2.5
Q ss_pred EEeCCH
Q 003461 148 CEFESA 153 (818)
Q Consensus 148 VeF~s~ 153 (818)
+.|++.
T Consensus 314 l~yedV 319 (338)
T KOG0917|consen 314 LQYEDV 319 (338)
T ss_pred cchHHH
Confidence 344443
No 175
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=32.19 E-value=2e+02 Score=31.51 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=36.1
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCce-eEEEEeecCCCCCCccEEEEEeCCHH
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAE 154 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V-~~~ki~~d~~tGk~kGfgFVeF~s~e 154 (818)
-.+.|||+|||..+.-.+|+.-+...|.+ .++.+ ..+.|-||..|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 35669999999999999999999887754 33322 123467899997753
No 176
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.68 E-value=56 Score=35.43 Aligned_cols=57 Identities=21% Similarity=0.429 Sum_probs=46.5
Q ss_pred hHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHh-hhHH--HHHHHHHHHHHH
Q 003461 745 WISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTI-LDDE--AEMFVLKMWRML 801 (818)
Q Consensus 745 wi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~l~~~l~~~-lde~--a~~fv~~lWr~l 801 (818)
-|+....-|||+.|+.|..-|.+.-++..+|.++.+.|... |.+= ...||..||-.+
T Consensus 263 kindllesymGirD~eLA~~i~e~~~~~~n~~efaeaideseL~~F~FpDefVfdvWg~I 322 (334)
T KOG3938|consen 263 KINDLLESYMGIRDTELASTIWETGKDKENPDEFAEAIDESELGDFAFPDEFVFDVWGAI 322 (334)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHhccccCCHHHHHHHhhhcccccccCCcceeeehhhhh
Confidence 56777888999999999999999999999998888777665 4432 467999999654
No 177
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.44 E-value=76 Score=28.73 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=35.3
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCC
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES 152 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s 152 (818)
...-|||||++..+.+.-...+...++.-.-+ ++.. ..+ ..||+|.++-+
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~-~~n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAV-MVWS-DNN-EQGFDFRTLGD 73 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEc-cCC-CCCEEEEEeCC
Confidence 35679999999999998888877766544333 3333 233 88999998743
No 178
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=30.92 E-value=23 Score=43.45 Aligned_cols=7 Identities=29% Similarity=0.990 Sum_probs=4.6
Q ss_pred ccEEEEE
Q 003461 143 KGFGFCE 149 (818)
Q Consensus 143 kGfgFVe 149 (818)
--||||.
T Consensus 158 DtygfVD 164 (1194)
T KOG4246|consen 158 DTYGFVD 164 (1194)
T ss_pred ccccccc
Confidence 3578875
No 179
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=29.54 E-value=32 Score=38.10 Aligned_cols=19 Identities=11% Similarity=0.246 Sum_probs=11.6
Q ss_pred EEEEEeehhhHHHHHHHHH
Q 003461 172 ELMLKVDQATREYLERYVD 190 (818)
Q Consensus 172 ~L~V~~a~~~kk~le~~k~ 190 (818)
.+.+.+.++-..+...|..
T Consensus 162 FmYiRYtqpp~dLw~WyEp 180 (453)
T KOG2888|consen 162 FMYIRYTQPPADLWDWYEP 180 (453)
T ss_pred eeEEeecCChhHHHHHhhh
Confidence 4566666666666655544
No 180
>PF13797 Post_transc_reg: Post-transcriptional regulator
Probab=29.12 E-value=1.3e+02 Score=27.21 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=47.7
Q ss_pred HhhhhhhhHHHHHHhh--hCC---chhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHH
Q 003461 738 LHERMRPWISKKITEF--LGE---EETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVL 795 (818)
Q Consensus 738 ~~~~~~pwi~kki~e~--lG~---ee~~lv~~i~~~l~~~~~~~~l~~~l~~~lde~a~~fv~ 795 (818)
..+.|+|||..|+.|| ||. ..+.|=+|+++..-++..|..|-+-+..||-=.+-.||.
T Consensus 5 ~~~~v~p~l~sK~eEf~~lGY~~vt~~dlw~yl~~~~WK~~~~~~l~e~V~DIlsl~~~~~m~ 67 (87)
T PF13797_consen 5 WREQVEPALQSKAEEFHLLGYESVTEEDLWSYLTEKKWKKKKPPRLHELVNDILSLKPNDYMN 67 (87)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcCCHHHHHHHHHHHHhccCCCcCHHHHHHHHHcCCHHHHHH
Confidence 3567899999999986 564 578899999999988888888888888888877777765
No 181
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=29.05 E-value=5.2e+02 Score=30.71 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=10.9
Q ss_pred cceeccCCCCCCHHHHHHHHhhcCcee
Q 003461 103 KVYVGKIAPTADSDFVLSVLKVCGTVK 129 (818)
Q Consensus 103 tLfVgNLp~~vte~~L~~lF~~~G~V~ 129 (818)
.|-...|+..-.-..|..-...-|.+.
T Consensus 483 ~ve~t~~~~~dgR~~LmaqIRqG~~Lk 509 (569)
T KOG3671|consen 483 KVETTALSSGDGRDALMAQIRQGGQLK 509 (569)
T ss_pred ceeeccCcCcccHHHHHHHHHhccccc
Confidence 344444553333344443333334333
No 182
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=26.29 E-value=49 Score=33.96 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=50.5
Q ss_pred CCccceeccCCCCCCHH-----HHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 003461 100 PQTKVYVGKIAPTADSD-----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 173 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~-----~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr-~L 173 (818)
-++++++.+|+..+-.. ....+|..|-......+.+. .++-.|.|.++..|..|.-.+++..|.|+ .|
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 35667788877654322 33455555544444333332 24556899999999999999999999998 77
Q ss_pred EEEeehh
Q 003461 174 MLKVDQA 180 (818)
Q Consensus 174 ~V~~a~~ 180 (818)
..-+++.
T Consensus 83 k~yfaQ~ 89 (193)
T KOG4019|consen 83 KLYFAQP 89 (193)
T ss_pred EEEEccC
Confidence 7766654
No 183
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=25.96 E-value=25 Score=43.24 Aligned_cols=12 Identities=8% Similarity=0.407 Sum_probs=7.4
Q ss_pred CCCccceeccCC
Q 003461 99 KPQTKVYVGKIA 110 (818)
Q Consensus 99 ~~~~tLfVgNLp 110 (818)
..+..+|+|++.
T Consensus 143 ~~~qR~f~gvvt 154 (1194)
T KOG4246|consen 143 NEPQRRFAGVVT 154 (1194)
T ss_pred CCcceeeehhhh
Confidence 346667777654
No 184
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=25.33 E-value=1.9e+02 Score=24.65 Aligned_cols=51 Identities=12% Similarity=0.319 Sum_probs=40.6
Q ss_pred hhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHH-HHHhhhHHHHHHHHHHHH
Q 003461 744 PWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLEL-LQTILDDEAEMFVLKMWR 799 (818)
Q Consensus 744 pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~l~~~-l~~~lde~a~~fv~~lWr 799 (818)
+++..-+.-++....+.+..++-..+....++..++.+ |.++|.+ |-.+|.
T Consensus 3 ~~~~~l~~al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~-----iG~~w~ 54 (79)
T PF02607_consen 3 ELIERLLDALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEE-----IGELWE 54 (79)
T ss_dssp HHHHHHHHHHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-----HHHHHh
Confidence 56677777778888888999999999888899999988 8888886 556665
No 185
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=24.88 E-value=1.1e+02 Score=32.74 Aligned_cols=88 Identities=11% Similarity=0.175 Sum_probs=54.4
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEe-CCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEF-ESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF-~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
...||||+|....--....+.+..+-.-..|.++.-.......|||-... .+.++...+|.++.+..+....+.|.-+.
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhST 116 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHST 116 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEEEecCc
Confidence 66899999987654433333333333333566655433334456774444 56688888888877777766677777777
Q ss_pred hhHHHHHHH
Q 003461 180 ATREYLERY 188 (818)
Q Consensus 180 ~~kk~le~~ 188 (818)
.|+..+=..
T Consensus 117 GcQdi~yYl 125 (299)
T KOG4840|consen 117 GCQDIMYYL 125 (299)
T ss_pred cchHHHHHH
Confidence 776655433
No 186
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=24.83 E-value=5.6 Score=45.11 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=62.3
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
....+.+-|.|||+....+.|..|+..||.|..|..+.. ..-...--|+|...+.+..||..|||..+....+.|.+
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 334677999999999999999999999999998865332 11112334789999999999999999999988888875
Q ss_pred e
Q 003461 178 D 178 (818)
Q Consensus 178 a 178 (818)
-
T Consensus 154 i 154 (584)
T KOG2193|consen 154 I 154 (584)
T ss_pred C
Confidence 4
No 187
>PF15473 PCNP: PEST, proteolytic signal-containing nuclear protein family
Probab=24.78 E-value=27 Score=34.48 Aligned_cols=18 Identities=33% Similarity=0.713 Sum_probs=14.1
Q ss_pred CccccCCcCCCCCCcchh
Q 003461 577 KRTAVPSVFHVEDDDDAD 594 (818)
Q Consensus 577 kr~~v~~vf~~~dde~~~ 594 (818)
+..+|+.|||.+||+|..
T Consensus 88 ~~~~va~~Fn~d~d~e~e 105 (150)
T PF15473_consen 88 KKLSVAAVFNEDDDSEPE 105 (150)
T ss_pred CcchhhhhhccccccChh
Confidence 467899999998777644
No 188
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=23.98 E-value=97 Score=28.70 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=35.0
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCH
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA 153 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~ 153 (818)
..-||||+++..+.+.-...+-..||.- ++-++.. +..-.||+|.++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~--~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWA--TNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEc--CCCCCCcEEEecCCC
Confidence 5679999999999988777777766542 3334342 334449999988754
No 189
>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type. The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.
Probab=23.31 E-value=2.7e+02 Score=25.51 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhhhhcccc
Q 003461 777 QMLELLQTILDDE--AEMFVLKMWRMLIFEIKKVETGLAL 814 (818)
Q Consensus 777 ~l~~~l~~~lde~--a~~fv~~lWr~life~~~~~~gl~~ 814 (818)
+++..+.....+. -..|+..||++||=|+.+.+..+..
T Consensus 52 ~vl~~~~~~a~~~gl~p~~~e~i~~~i~~esir~q~~~~~ 91 (94)
T TIGR01795 52 YQIARLRRLAIDAGLDPEFAEKFLNFIVTEVIKHHERIAD 91 (94)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444443333 4679999999999999998876653
No 190
>PF15208 Rab15_effector: Rab15 effector
Probab=23.24 E-value=72 Score=33.35 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.5
Q ss_pred ccccchhhHhhhhhhhHHHHHHhhhCCchhH
Q 003461 730 WAVYDKHELHERMRPWISKKITEFLGEEETT 760 (818)
Q Consensus 730 w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~ 760 (818)
+++|...++ ..+.|..||||++|+.
T Consensus 21 cev~S~avv------hAsqklkEYLgFedP~ 45 (236)
T PF15208_consen 21 CEVVSQAVV------HASQKLKEYLGFEDPL 45 (236)
T ss_pred HHHHHHHHH------HHHHHHHHHhCccCcH
Confidence 666766666 4577899999999984
No 191
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.39 E-value=2.9e+02 Score=34.84 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=3.4
Q ss_pred ccCCCCh
Q 003461 603 VPIDYST 609 (818)
Q Consensus 603 vpl~y~~ 609 (818)
|-|.|++
T Consensus 702 v~fkhDd 708 (1007)
T KOG1984|consen 702 VEFKHDD 708 (1007)
T ss_pred EEEeccc
Confidence 4455544
No 192
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=22.31 E-value=1.3e+02 Score=28.55 Aligned_cols=58 Identities=22% Similarity=0.232 Sum_probs=32.0
Q ss_pred ccceeccCCC---------CCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCH-HHHHHHHHH
Q 003461 102 TKVYVGKIAP---------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA-EGVLRALRL 162 (818)
Q Consensus 102 ~tLfVgNLp~---------~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~-esA~~Al~~ 162 (818)
.++.|-|++. .++...|...|..|..+. ++.+.+. ..+.||+.|.|.+- .....|+++
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 3556667754 345678999999998774 5555653 36779999999654 666667764
No 193
>PRK15313 autotransport protein MisL; Provisional
Probab=22.04 E-value=1.7e+02 Score=37.27 Aligned_cols=9 Identities=0% Similarity=0.427 Sum_probs=3.9
Q ss_pred cceeccCCC
Q 003461 103 KVYVGKIAP 111 (818)
Q Consensus 103 tLfVgNLp~ 111 (818)
++|+..|..
T Consensus 651 ~LF~~tLhD 659 (955)
T PRK15313 651 TLFMTRLHD 659 (955)
T ss_pred HHhhccHHH
Confidence 444444443
No 194
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=21.13 E-value=2.9e+02 Score=24.64 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=44.1
Q ss_pred hhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 003461 743 RPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLI 802 (818)
Q Consensus 743 ~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~l~~~l~~~lde~a~~fv~~lWr~li 802 (818)
.+=+..++..+|-..|-.-+-+.++....+.+-..|+-.|..+||.-|.--+...=|.||
T Consensus 5 ~r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lI 64 (78)
T cd07347 5 AREFSQQVDHLLTDAEREQVTRALERYHQERNVDDLVRDLYLVLDTPAKLPLLQFLRQVI 64 (78)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCcHhHHHHHHHHHHHc
Confidence 455677888889666655555555666667799999999999999999865555555555
No 195
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=20.83 E-value=1.1e+02 Score=31.10 Aligned_cols=65 Identities=15% Similarity=0.217 Sum_probs=45.9
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 162 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~ 162 (818)
......+++++++..++...+..+|..+|.+....+...........+.|+.+.....+..++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhcc
Confidence 34578899999999999999999999999997776655533333445555555544444444443
Done!