Query 003461
Match_columns 818
No_of_seqs 442 out of 2758
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 02:01:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003461.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003461hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v53_A RNA-binding protein 25; 100.0 1.5E-37 5.1E-42 286.8 10.3 106 708-813 13-118 (119)
2 1mp1_A Ser/Arg-related nuclear 99.9 4.3E-22 1.5E-26 182.3 8.4 92 718-814 5-98 (111)
3 1x4q_A U4/U6 small nuclear rib 99.8 4.2E-19 1.4E-23 158.3 7.6 67 739-805 15-81 (92)
4 3pgw_S U1-70K; protein-RNA com 99.7 1.5E-17 5.1E-22 188.6 14.3 83 98-180 99-181 (437)
5 4fxv_A ELAV-like protein 1; RN 99.7 3.7E-17 1.3E-21 148.0 10.5 81 100-180 18-98 (99)
6 3s8s_A Histone-lysine N-methyl 99.7 2.4E-16 8.3E-21 145.5 12.5 85 100-184 5-89 (110)
7 3n9u_C Cleavage and polyadenyl 99.7 4.9E-16 1.7E-20 152.3 12.3 89 100-190 54-144 (156)
8 2khc_A Testis-specific RNP-typ 99.6 1.3E-15 4.4E-20 141.1 13.6 80 99-178 38-117 (118)
9 3ns6_A Eukaryotic translation 99.6 2.5E-16 8.6E-21 142.4 7.3 86 100-185 5-97 (100)
10 2lxi_A RNA-binding protein 10; 99.6 8.4E-17 2.9E-21 143.3 3.3 81 101-181 1-83 (91)
11 3mdf_A Peptidyl-prolyl CIS-tra 99.6 1.7E-15 6E-20 131.6 10.2 80 99-178 5-84 (85)
12 3bs9_A Nucleolysin TIA-1 isofo 99.6 2E-15 6.7E-20 131.9 10.5 81 100-180 5-85 (87)
13 2la6_A RNA-binding protein FUS 99.6 1.7E-15 5.8E-20 136.1 10.3 79 100-178 12-98 (99)
14 3md1_A Nuclear and cytoplasmic 99.6 2.1E-15 7.2E-20 130.5 10.3 80 101-180 1-80 (83)
15 2e5h_A Zinc finger CCHC-type a 99.6 4.1E-15 1.4E-19 131.8 12.4 79 100-178 15-93 (94)
16 2lkz_A RNA-binding protein 5; 99.6 6.3E-16 2.2E-20 139.2 7.2 81 100-180 8-94 (95)
17 2x1f_A MRNA 3'-END-processing 99.6 2.1E-15 7.3E-20 134.7 10.6 82 100-181 1-82 (96)
18 1u6f_A Tcubp1, RNA-binding pro 99.6 5.5E-15 1.9E-19 140.8 14.0 83 98-180 39-121 (139)
19 2cq4_A RNA binding motif prote 99.6 2.4E-15 8.1E-20 138.6 10.4 83 98-181 22-104 (114)
20 2cqc_A Arginine/serine-rich sp 99.6 4.1E-15 1.4E-19 131.9 11.6 81 99-179 13-93 (95)
21 3p5t_L Cleavage and polyadenyl 99.6 8.2E-16 2.8E-20 136.0 6.2 80 102-181 2-83 (90)
22 1x5u_A Splicing factor 3B subu 99.6 3.4E-15 1.2E-19 135.3 10.5 82 99-180 13-94 (105)
23 2cpz_A CUG triplet repeat RNA- 99.6 5.1E-15 1.7E-19 136.6 11.8 82 99-180 23-104 (115)
24 1whw_A Hypothetical protein ri 99.6 4.3E-15 1.5E-19 133.2 10.9 82 99-180 6-87 (99)
25 1oo0_B CG8781-PA, drosophila Y 99.6 3.9E-15 1.3E-19 136.2 10.6 82 99-180 24-105 (110)
26 2dgs_A DAZ-associated protein 99.6 3.8E-15 1.3E-19 133.6 10.3 81 99-180 8-88 (99)
27 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.7E-15 1.3E-19 134.3 10.2 82 99-180 10-91 (102)
28 2dnz_A Probable RNA-binding pr 99.6 3.4E-15 1.2E-19 132.7 9.7 81 100-180 4-84 (95)
29 4f25_A Polyadenylate-binding p 99.6 3.1E-15 1.1E-19 138.6 9.7 78 101-180 5-82 (115)
30 2cq0_A Eukaryotic translation 99.6 3.8E-15 1.3E-19 134.6 9.8 82 99-180 13-94 (103)
31 1x5t_A Splicing factor 3B subu 99.6 3.3E-15 1.1E-19 133.0 9.3 81 100-180 4-85 (96)
32 1p27_B RNA-binding protein 8A; 99.6 3.3E-15 1.1E-19 135.6 9.4 81 100-180 22-102 (106)
33 2dgo_A Cytotoxic granule-assoc 99.6 7.4E-15 2.5E-19 135.4 11.9 82 99-180 13-94 (115)
34 2jrs_A RNA-binding protein 39; 99.6 3.5E-15 1.2E-19 136.9 9.6 82 99-180 24-105 (108)
35 2dnm_A SRP46 splicing factor; 99.6 3.2E-15 1.1E-19 135.1 8.9 82 99-180 11-92 (103)
36 2do4_A Squamous cell carcinoma 99.6 8.6E-15 3E-19 131.6 11.5 81 99-180 15-95 (100)
37 1x4h_A RNA-binding protein 28; 99.6 6.7E-15 2.3E-19 134.5 10.9 81 100-180 14-100 (111)
38 2dgp_A Bruno-like 4, RNA bindi 99.6 4.4E-15 1.5E-19 134.7 9.4 82 99-180 11-95 (106)
39 2cph_A RNA binding motif prote 99.6 7.1E-15 2.4E-19 133.5 10.7 83 98-180 12-96 (107)
40 3ulh_A THO complex subunit 4; 99.6 8.2E-15 2.8E-19 133.2 10.9 79 100-179 28-106 (107)
41 3s7r_A Heterogeneous nuclear r 99.6 8E-15 2.7E-19 128.3 10.3 79 99-178 9-87 (87)
42 2cpe_A RNA-binding protein EWS 99.6 6.8E-15 2.3E-19 135.2 10.3 82 99-180 13-102 (113)
43 1x5s_A Cold-inducible RNA-bind 99.6 5.8E-15 2E-19 133.0 9.5 82 99-180 10-91 (102)
44 2div_A TRNA selenocysteine ass 99.6 5.1E-15 1.7E-19 132.7 9.0 82 99-180 7-93 (99)
45 2j76_E EIF-4B, EIF4B, eukaryot 99.6 1.8E-15 6.2E-20 136.5 6.0 79 100-180 18-97 (100)
46 2ywk_A Putative RNA-binding pr 99.6 7.1E-15 2.4E-19 130.6 9.6 80 99-179 14-93 (95)
47 2cpf_A RNA binding motif prote 99.6 5.4E-15 1.8E-19 132.3 8.9 81 100-180 4-87 (98)
48 2nlw_A Eukaryotic translation 99.6 2.6E-15 8.8E-20 136.8 6.8 83 99-183 13-102 (105)
49 2dnh_A Bruno-like 5, RNA bindi 99.6 1E-14 3.5E-19 132.1 10.5 81 99-180 13-96 (105)
50 4a8x_A RNA-binding protein wit 99.6 7.1E-15 2.4E-19 128.4 9.1 81 100-180 3-84 (88)
51 2err_A Ataxin-2-binding protei 99.6 7.5E-15 2.6E-19 134.8 9.6 80 99-180 27-106 (109)
52 1s79_A Lupus LA protein; RRM, 99.6 5.4E-15 1.8E-19 134.9 8.2 79 99-179 9-87 (103)
53 2kxn_B Transformer-2 protein h 99.6 7.6E-15 2.6E-19 139.2 9.5 82 99-180 44-125 (129)
54 2dng_A Eukaryotic translation 99.6 1.3E-14 4.5E-19 131.2 10.5 80 99-180 13-92 (103)
55 3ucg_A Polyadenylate-binding p 99.6 1.1E-14 3.8E-19 127.6 9.7 80 100-180 5-84 (89)
56 2rs2_A Musashi-1, RNA-binding 99.6 1E-14 3.5E-19 133.9 9.9 82 98-180 22-103 (109)
57 2cqi_A Nucleolysin TIAR; RNA r 99.6 2.6E-14 8.9E-19 129.1 12.4 81 98-180 12-92 (103)
58 3ex7_B RNA-binding protein 8A; 99.5 8E-15 2.7E-19 137.3 9.2 81 100-180 21-101 (126)
59 1p1t_A Cleavage stimulation fa 99.5 3.5E-15 1.2E-19 134.8 6.3 83 99-181 6-88 (104)
60 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 4.7E-14 1.6E-18 133.9 14.4 80 99-178 61-140 (140)
61 2cqp_A RNA-binding protein 12; 99.5 9.5E-15 3.2E-19 130.7 8.9 80 100-179 14-93 (98)
62 1wi8_A EIF-4B, eukaryotic tran 99.5 1.5E-14 5E-19 131.1 10.3 79 100-180 14-93 (104)
63 2d9p_A Polyadenylate-binding p 99.5 1.5E-14 5E-19 130.7 10.0 80 99-180 13-92 (103)
64 2fy1_A RNA-binding motif prote 99.5 1.1E-14 3.7E-19 135.4 9.3 81 99-180 5-85 (116)
65 1x4b_A Heterogeneous nuclear r 99.5 1.5E-14 5E-19 133.7 9.9 81 99-180 25-105 (116)
66 2kt5_A RNA and export factor-b 99.5 7.6E-14 2.6E-18 130.5 14.9 81 99-180 33-113 (124)
67 2mss_A Protein (musashi1); RNA 99.5 6.1E-15 2.1E-19 125.4 6.6 75 103-178 1-75 (75)
68 2dgv_A HnRNP M, heterogeneous 99.5 1.4E-14 4.7E-19 128.0 9.1 80 99-180 6-85 (92)
69 2cqd_A RNA-binding region cont 99.5 3.4E-14 1.2E-18 131.3 11.9 82 98-180 14-95 (116)
70 2m2b_A RNA-binding protein 10; 99.5 5.3E-15 1.8E-19 140.1 6.6 81 99-180 21-107 (131)
71 2cq3_A RNA-binding protein 9; 99.5 4.8E-14 1.6E-18 127.4 12.5 80 99-180 13-92 (103)
72 2ek1_A RNA-binding protein 12; 99.5 8.4E-15 2.9E-19 130.1 7.3 80 100-179 14-93 (95)
73 2do0_A HnRNP M, heterogeneous 99.5 3.3E-14 1.1E-18 130.7 11.5 81 99-180 13-93 (114)
74 2dhg_A TRNA selenocysteine ass 99.5 1.1E-14 3.6E-19 131.8 8.0 81 99-180 7-89 (104)
75 1x4e_A RNA binding motif, sing 99.5 3.3E-15 1.1E-19 130.1 4.3 79 100-178 4-82 (85)
76 2cqg_A TDP-43, TAR DNA-binding 99.5 4.8E-14 1.6E-18 127.4 12.1 81 98-180 12-92 (103)
77 2dh8_A DAZ-associated protein 99.5 2.1E-14 7.2E-19 130.2 9.7 82 98-180 13-94 (105)
78 2dgx_A KIAA0430 protein; RRM d 99.5 3E-14 1E-18 127.5 10.6 78 100-180 8-89 (96)
79 1rk8_A CG8781-PA, CG8781-PA pr 99.5 2.4E-14 8.3E-19 140.8 10.9 81 100-180 71-151 (165)
80 2jwn_A Embryonic polyadenylate 99.5 1.4E-14 4.7E-19 135.3 8.7 80 100-180 35-114 (124)
81 1uaw_A Mouse-musashi-1; RNP-ty 99.5 6.9E-15 2.4E-19 125.4 5.9 76 102-178 1-76 (77)
82 1h2v_Z 20 kDa nuclear CAP bind 99.5 3.6E-14 1.2E-18 138.0 11.5 82 99-180 37-118 (156)
83 2kn4_A Immunoglobulin G-bindin 99.5 3.5E-14 1.2E-18 138.0 11.3 81 100-180 69-149 (158)
84 2dgw_A Probable RNA-binding pr 99.5 4.9E-14 1.7E-18 124.4 11.0 79 99-180 8-86 (91)
85 2cpy_A RNA-binding protein 12; 99.5 3.2E-14 1.1E-18 131.5 9.9 80 99-180 13-93 (114)
86 2ki2_A SS-DNA binding protein 99.5 5.2E-15 1.8E-19 130.3 4.2 79 102-181 2-80 (90)
87 2a3j_A U1 small nuclear ribonu 99.5 2.7E-14 9.4E-19 135.3 9.4 80 100-182 28-111 (127)
88 1fj7_A Nucleolin RBD1, protein 99.5 6E-15 2.1E-19 132.8 4.5 80 99-180 15-94 (101)
89 2db1_A Heterogeneous nuclear r 99.5 4.2E-14 1.4E-18 131.8 10.3 80 99-180 15-97 (118)
90 1x4a_A Splicing factor, argini 99.5 1.1E-13 3.7E-18 126.4 12.5 78 100-180 21-98 (109)
91 2dis_A Unnamed protein product 99.5 2.6E-14 8.9E-19 130.3 8.2 81 100-180 7-91 (109)
92 3pgw_A U1-A; protein-RNA compl 99.5 4.9E-13 1.7E-17 141.5 19.2 77 98-179 204-281 (282)
93 2j8a_A Histone-lysine N-methyl 99.5 5.7E-14 1.9E-18 132.4 10.5 90 101-190 2-107 (136)
94 2la4_A Nuclear and cytoplasmic 99.5 1.3E-14 4.4E-19 130.6 5.8 75 100-180 26-100 (101)
95 2wbr_A GW182, gawky, LD47780P; 99.5 7E-14 2.4E-18 123.7 10.0 74 100-179 6-79 (89)
96 1wel_A RNA-binding protein 12; 99.5 4.3E-14 1.5E-18 132.5 9.2 81 100-181 24-104 (124)
97 1x5o_A RNA binding motif, sing 99.5 1.1E-13 3.7E-18 127.3 11.7 81 99-180 23-111 (114)
98 2cpi_A CCR4-NOT transcription 99.5 4E-14 1.4E-18 130.2 8.7 81 100-180 14-100 (111)
99 2krb_A Eukaryotic translation 99.5 1.5E-14 5.1E-19 125.2 5.3 73 101-175 1-80 (81)
100 1nu4_A U1A RNA binding domain; 99.5 3.1E-14 1.1E-18 126.9 7.1 80 99-181 6-89 (97)
101 3lqv_A PRE-mRNA branch site pr 99.5 7E-14 2.4E-18 128.8 9.7 80 100-182 7-86 (115)
102 1iqt_A AUF1, heterogeneous nuc 99.5 1.9E-14 6.6E-19 122.1 5.2 75 103-178 1-75 (75)
103 1sjq_A Polypyrimidine tract-bi 99.5 5E-14 1.7E-18 129.1 8.3 75 100-180 15-91 (105)
104 2lea_A Serine/arginine-rich sp 99.5 3E-14 1E-18 136.1 6.8 82 99-180 45-126 (135)
105 2cq1_A PTB-like protein L; RRM 99.5 1.6E-13 5.6E-18 124.8 11.2 76 99-180 13-90 (101)
106 3q2s_C Cleavage and polyadenyl 99.5 3.6E-14 1.2E-18 147.5 7.7 82 100-181 67-150 (229)
107 2fc9_A NCL protein; structure 99.5 1.3E-13 4.6E-18 123.9 10.5 79 98-180 12-90 (101)
108 1wg5_A Heterogeneous nuclear r 99.5 9.4E-14 3.2E-18 126.2 9.3 79 99-179 13-92 (104)
109 2cpx_A Hypothetical protein FL 99.5 4.5E-14 1.6E-18 129.9 7.3 81 100-180 24-104 (115)
110 2fc8_A NCL protein; structure 99.5 1.5E-13 5.3E-18 123.6 10.6 79 99-180 13-91 (102)
111 2xnq_A Nuclear polyadenylated 99.5 1.5E-13 5E-18 123.5 10.4 73 100-180 21-94 (97)
112 2lmi_A GRSF-1, G-rich sequence 99.5 3.4E-14 1.1E-18 129.9 6.2 80 99-180 9-91 (107)
113 4f02_A Polyadenylate-binding p 99.5 1.2E-13 4.2E-18 140.9 10.7 82 100-181 14-95 (213)
114 1wez_A HnRNP H', FTP-3, hetero 99.5 7.1E-14 2.4E-18 127.0 7.2 78 100-180 14-91 (102)
115 2hgl_A HNRPF protein, heteroge 99.5 9.3E-14 3.2E-18 133.2 8.3 79 100-180 43-124 (136)
116 1x4c_A Splicing factor, argini 99.5 2.3E-13 7.8E-18 124.4 10.4 74 100-180 14-92 (108)
117 2jvo_A Nucleolar protein 3; nu 99.5 1.7E-13 5.8E-18 125.7 9.5 75 99-181 29-103 (108)
118 3r27_A HnRNP L, heterogeneous 99.4 1.8E-13 6.2E-18 124.3 9.4 76 99-180 19-96 (100)
119 1fjc_A Nucleolin RBD2, protein 99.4 7.8E-14 2.7E-18 124.2 6.9 78 98-180 13-90 (96)
120 2ytc_A PRE-mRNA-splicing facto 99.4 2.9E-13 9.9E-18 117.6 10.2 74 99-178 10-84 (85)
121 2jvr_A Nucleolar protein 3; RN 99.4 1.9E-13 6.6E-18 126.5 9.6 77 100-180 27-104 (111)
122 2xs2_A Deleted in azoospermia- 99.4 6.9E-14 2.4E-18 126.1 6.3 79 100-181 8-86 (102)
123 3egn_A RNA-binding protein 40; 99.4 3.7E-14 1.3E-18 135.9 4.7 83 99-181 43-130 (143)
124 1x4d_A Matrin 3; structural ge 99.4 8.5E-14 2.9E-18 127.0 6.7 75 100-180 14-91 (102)
125 2dnq_A RNA-binding protein 4B; 99.4 2.1E-13 7.3E-18 120.2 9.1 74 99-180 6-79 (90)
126 1x4g_A Nucleolysin TIAR; struc 99.4 2.5E-13 8.6E-18 124.1 9.8 76 99-180 23-98 (109)
127 2e5j_A Methenyltetrahydrofolat 99.4 2E-13 6.7E-18 122.2 8.8 76 100-180 18-93 (97)
128 2dnn_A RNA-binding protein 12; 99.4 3.4E-13 1.2E-17 124.3 10.6 78 100-180 15-92 (109)
129 3md3_A Nuclear and cytoplasmic 99.4 4.5E-13 1.5E-17 129.2 11.8 80 100-179 86-165 (166)
130 2f3j_A RNA and export factor b 99.4 2.2E-13 7.6E-18 136.1 9.7 82 99-181 86-167 (177)
131 1why_A Hypothetical protein ri 99.4 3.6E-13 1.2E-17 120.3 10.1 75 100-180 16-92 (97)
132 2ad9_A Polypyrimidine tract-bi 99.4 2.1E-13 7.3E-18 127.7 8.3 75 100-180 30-106 (119)
133 2dgt_A RNA-binding protein 30; 99.4 6.1E-13 2.1E-17 117.7 10.8 74 99-180 8-81 (92)
134 2lcw_A RNA-binding protein FUS 99.1 1.5E-14 5E-19 133.8 0.0 82 99-180 5-94 (116)
135 1fxl_A Paraneoplastic encephal 99.4 4.9E-13 1.7E-17 129.0 10.7 80 101-180 2-81 (167)
136 2dnp_A RNA-binding protein 14; 99.4 6.8E-13 2.3E-17 116.9 10.1 74 99-180 7-80 (90)
137 1wf1_A RNA-binding protein RAL 99.4 1.1E-12 3.6E-17 120.1 11.6 73 100-180 26-99 (110)
138 2hvz_A Splicing factor, argini 99.4 1.9E-13 6.5E-18 122.9 6.5 74 102-180 1-74 (101)
139 2cpj_A Non-POU domain-containi 99.4 4.6E-13 1.6E-17 120.1 8.8 76 99-180 13-88 (99)
140 2g4b_A Splicing factor U2AF 65 99.4 6.6E-13 2.3E-17 129.3 10.7 79 100-178 93-171 (172)
141 1b7f_A Protein (SXL-lethal pro 99.4 5E-13 1.7E-17 129.5 9.7 81 100-180 2-82 (168)
142 2dgu_A Heterogeneous nuclear r 99.4 9.5E-13 3.2E-17 119.0 10.6 74 99-180 9-82 (103)
143 2i2y_A Fusion protein consists 99.4 5.6E-13 1.9E-17 128.7 9.6 77 99-180 71-147 (150)
144 2e44_A Insulin-like growth fac 99.4 6.2E-13 2.1E-17 118.3 8.8 77 100-180 14-91 (96)
145 1whx_A Hypothetical protein ri 99.4 3.2E-13 1.1E-17 124.4 7.1 75 100-180 9-83 (111)
146 1wex_A Hypothetical protein (r 99.4 6E-13 2E-17 121.7 8.0 75 100-180 14-90 (104)
147 2kvi_A Nuclear polyadenylated 99.4 4.8E-13 1.7E-17 119.5 7.1 74 99-180 8-82 (96)
148 1l3k_A Heterogeneous nuclear r 99.4 1.1E-12 3.7E-17 130.6 10.3 81 99-180 11-91 (196)
149 2e5g_A U6 snRNA-specific termi 99.4 8.6E-13 2.9E-17 117.3 8.5 74 100-179 7-80 (94)
150 2cqh_A IGF-II mRNA-binding pro 99.4 1E-12 3.5E-17 116.3 8.7 75 99-180 6-82 (93)
151 2cpd_A Apobec-1 stimulating pr 99.4 2.9E-12 1E-16 114.8 11.5 74 99-180 13-88 (99)
152 1x4f_A Matrin 3; structural ge 99.4 8.5E-13 2.9E-17 122.3 8.1 76 99-180 23-101 (112)
153 1wg1_A KIAA1579 protein, homol 99.4 1.2E-12 4.2E-17 115.0 8.5 74 100-180 4-77 (88)
154 2dha_A FLJ20171 protein; RRM d 99.4 6.2E-13 2.1E-17 125.3 7.0 79 100-180 22-104 (123)
155 2dnl_A Cytoplasmic polyadenyla 99.4 9.1E-13 3.1E-17 121.7 7.9 78 99-179 6-86 (114)
156 4f02_A Polyadenylate-binding p 99.4 1.9E-12 6.6E-17 132.1 11.0 80 100-181 102-181 (213)
157 2yh0_A Splicing factor U2AF 65 99.4 3.3E-12 1.1E-16 127.3 12.3 82 99-180 112-193 (198)
158 2qfj_A FBP-interacting repress 99.4 1.4E-12 4.8E-17 131.7 9.5 82 99-180 123-204 (216)
159 1x5p_A Negative elongation fac 99.3 3.6E-12 1.2E-16 113.9 11.0 73 100-180 14-86 (97)
160 2cjk_A Nuclear polyadenylated 99.3 8E-13 2.8E-17 128.1 7.2 80 100-180 86-165 (167)
161 2hgm_A HNRPF protein, heteroge 99.3 9.6E-13 3.3E-17 124.5 7.0 78 100-180 41-120 (126)
162 3d2w_A TAR DNA-binding protein 99.3 2.3E-12 7.8E-17 114.1 9.0 74 99-181 9-84 (89)
163 2hgn_A Heterogeneous nuclear r 99.3 3.8E-13 1.3E-17 129.4 4.0 78 100-180 45-122 (139)
164 1l3k_A Heterogeneous nuclear r 99.3 2.6E-12 9E-17 127.7 10.1 81 100-181 103-183 (196)
165 2cq2_A Hypothetical protein LO 99.3 2.4E-12 8.1E-17 119.7 8.9 76 99-180 23-105 (114)
166 1b7f_A Protein (SXL-lethal pro 99.3 3.4E-12 1.2E-16 123.6 10.3 79 100-178 88-168 (168)
167 3md3_A Nuclear and cytoplasmic 99.3 2.9E-12 9.8E-17 123.5 9.7 78 102-180 1-78 (166)
168 2hzc_A Splicing factor U2AF 65 99.3 3.3E-12 1.1E-16 111.3 8.7 71 99-176 4-85 (87)
169 3beg_B Splicing factor, argini 99.3 1.6E-12 5.6E-17 120.3 7.2 73 100-179 15-92 (115)
170 2qfj_A FBP-interacting repress 99.3 2.9E-12 1E-16 129.4 8.9 82 100-181 27-108 (216)
171 1fxl_A Paraneoplastic encephal 99.3 4.5E-12 1.5E-16 122.2 9.8 79 100-178 87-167 (167)
172 3tyt_A Heterogeneous nuclear r 99.3 4.1E-12 1.4E-16 129.6 9.9 77 99-180 2-79 (205)
173 2diu_A KIAA0430 protein; struc 99.3 2.9E-12 9.9E-17 114.5 7.5 70 101-180 8-83 (96)
174 3nmr_A Cugbp ELAV-like family 99.3 3.7E-12 1.3E-16 123.9 8.9 79 100-179 94-175 (175)
175 2pe8_A Splicing factor 45; RRM 99.3 1.2E-11 4E-16 113.3 11.0 82 99-180 6-93 (105)
176 2cjk_A Nuclear polyadenylated 99.3 4.9E-12 1.7E-16 122.5 8.4 79 100-180 2-80 (167)
177 3zzy_A Polypyrimidine tract-bi 99.3 1.3E-11 4.6E-16 117.2 9.9 76 100-180 27-105 (130)
178 1sjr_A Polypyrimidine tract-bi 99.3 9.6E-12 3.3E-16 122.5 9.2 76 101-180 46-123 (164)
179 3pgw_A U1-A; protein-RNA compl 99.3 1.3E-11 4.3E-16 130.6 10.9 82 98-182 6-91 (282)
180 2voo_A Lupus LA protein; RNA-b 99.3 1E-11 3.6E-16 125.6 9.7 79 100-180 108-186 (193)
181 3nmr_A Cugbp ELAV-like family 99.3 9.5E-12 3.3E-16 121.0 8.9 80 100-179 2-86 (175)
182 1fje_B Nucleolin RBD12, protei 99.3 1.3E-11 4.5E-16 120.8 9.8 77 99-180 97-173 (175)
183 2bz2_A Negative elongation fac 99.2 9.4E-12 3.2E-16 116.6 8.2 73 100-180 38-110 (121)
184 1wf0_A TDP-43, TAR DNA-binding 99.2 6.6E-12 2.3E-16 110.0 5.5 74 100-180 4-77 (88)
185 2e5i_A Heterogeneous nuclear r 99.2 2.9E-11 9.9E-16 114.0 9.9 74 101-180 25-101 (124)
186 2ghp_A U4/U6 snRNA-associated 99.2 2.1E-11 7E-16 129.6 9.7 82 98-180 207-290 (292)
187 3smz_A Protein raver-1, ribonu 99.2 3.7E-11 1.3E-15 127.1 11.1 81 100-180 94-174 (284)
188 2adc_A Polypyrimidine tract-bi 99.2 2.2E-11 7.4E-16 125.6 8.5 76 100-180 33-109 (229)
189 3smz_A Protein raver-1, ribonu 99.2 4.4E-11 1.5E-15 126.6 10.1 82 99-181 182-264 (284)
190 1fje_B Nucleolin RBD12, protei 99.2 1.1E-11 3.9E-16 121.2 4.8 80 99-180 11-90 (175)
191 3tyt_A Heterogeneous nuclear r 99.2 3.4E-11 1.2E-15 122.8 8.5 77 100-178 122-204 (205)
192 3v4m_A Splicing factor U2AF 65 99.1 1.4E-10 4.8E-15 106.0 9.7 82 99-180 3-96 (105)
193 3u1l_A PRE-mRNA-splicing facto 99.1 4.3E-11 1.5E-15 125.0 7.0 78 98-181 131-229 (240)
194 2dit_A HIV TAT specific factor 99.1 1.1E-10 3.9E-15 107.3 8.8 78 100-181 14-102 (112)
195 3sde_A Paraspeckle component 1 99.1 1.5E-10 5.1E-15 121.8 10.8 76 99-180 20-95 (261)
196 1qm9_A Polypyrimidine tract-bi 99.1 4.8E-11 1.7E-15 119.4 6.5 75 101-180 3-78 (198)
197 1jmt_A Splicing factor U2AF 35 99.1 5.2E-11 1.8E-15 108.7 5.3 72 106-178 20-103 (104)
198 2ghp_A U4/U6 snRNA-associated 99.1 1.4E-10 4.7E-15 123.3 9.1 81 100-181 116-197 (292)
199 2yh0_A Splicing factor U2AF 65 99.1 2.4E-11 8.2E-16 120.9 3.1 74 100-180 3-87 (198)
200 1qm9_A Polypyrimidine tract-bi 99.1 2.2E-10 7.5E-15 114.6 9.4 77 99-180 118-196 (198)
201 3sde_A Paraspeckle component 1 99.1 2.1E-10 7.1E-15 120.7 9.3 80 100-180 95-178 (261)
202 3ue2_A Poly(U)-binding-splicin 99.0 4E-10 1.4E-14 105.3 8.8 81 100-180 19-108 (118)
203 2adc_A Polypyrimidine tract-bi 99.0 3.4E-10 1.2E-14 116.7 8.8 77 99-180 149-227 (229)
204 2g4b_A Splicing factor U2AF 65 99.0 5.2E-10 1.8E-14 108.7 8.6 73 100-179 3-86 (172)
205 3tht_A Alkylated DNA repair pr 98.9 1.8E-09 6.1E-14 118.4 9.5 76 98-179 15-97 (345)
206 2d9o_A DNAJ (HSP40) homolog, s 98.8 1.5E-08 5.2E-13 91.8 9.3 63 111-180 27-89 (100)
207 3s6e_A RNA-binding protein 39; 98.8 2.1E-08 7.1E-13 93.1 10.2 83 100-187 6-98 (114)
208 2dnr_A Synaptojanin-1; RRM dom 98.7 4.7E-08 1.6E-12 86.6 8.3 73 98-179 4-84 (91)
209 1owx_A Lupus LA protein, SS-B, 98.6 9.3E-08 3.2E-12 89.5 9.4 86 99-190 16-107 (121)
210 1ufw_A Synaptojanin 2; RNP dom 98.5 3.5E-07 1.2E-11 81.5 8.1 71 98-177 12-91 (95)
211 3dxb_A Thioredoxin N-terminall 98.3 9.7E-07 3.3E-11 90.3 8.0 68 113-180 141-212 (222)
212 2l9w_A U4/U6 snRNA-associated- 97.7 0.0002 6.8E-09 65.3 10.6 73 100-178 20-97 (117)
213 1wey_A Calcipressin 1; structu 96.6 0.0034 1.1E-07 56.8 6.5 75 100-180 4-83 (104)
214 1uw4_A UPF3X; nonsense mediate 95.0 0.064 2.2E-06 47.4 7.8 68 102-169 2-71 (91)
215 1whv_A Poly(A)-specific ribonu 94.2 0.14 4.7E-06 45.8 7.7 53 103-163 17-69 (100)
216 2dhx_A Poly (ADP-ribose) polym 93.8 0.18 6.1E-06 45.5 7.9 69 100-177 7-80 (104)
217 1wwh_A Nucleoporin 35, nucleop 92.4 0.35 1.2E-05 44.8 7.8 71 100-178 23-94 (119)
218 3ctr_A Poly(A)-specific ribonu 92.4 0.12 3.9E-06 46.4 4.4 53 104-164 8-60 (101)
219 3p3d_A Nucleoporin 53; structu 91.4 0.29 1E-05 46.0 6.1 88 101-192 7-108 (132)
220 2kn4_A Immunoglobulin G-bindin 91.3 0.15 5.1E-06 48.5 4.3 36 130-167 2-37 (158)
221 2i2y_A Fusion protein consists 90.4 0.14 4.8E-06 48.4 3.1 46 131-179 3-49 (150)
222 2l08_A Regulator of nonsense t 87.0 0.64 2.2E-05 41.5 4.7 69 101-169 9-79 (97)
223 3pq1_A Poly(A) RNA polymerase; 80.9 0.84 2.9E-05 51.7 3.5 65 100-171 52-116 (464)
224 3m91_B Prokaryotic ubiquitin-l 61.5 2.9 9.9E-05 31.5 1.2 24 774-797 15-38 (44)
225 3d45_A Poly(A)-specific ribonu 58.7 18 0.0006 41.4 7.8 55 101-164 440-494 (507)
226 2v75_A Nuclear polyadenylated 54.9 31 0.0011 30.4 6.8 61 738-798 6-72 (104)
227 3qks_C DNA double-strand break 36.0 17 0.00057 25.7 1.7 25 746-770 7-31 (34)
228 3m9d_G Prokaryotic ubiquitin-l 31.2 7.4 0.00025 32.0 -0.8 24 774-797 39-62 (68)
229 2g0c_A ATP-dependent RNA helic 21.3 1.2E+02 0.0041 24.7 4.9 58 112-178 12-74 (76)
No 1
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=286.76 Aligned_cols=106 Identities=44% Similarity=0.889 Sum_probs=101.3
Q ss_pred HHHhhhhcCCCCchhhhcccccccccchhhHhhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhh
Q 003461 708 DAKQLIDMIPKTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILD 787 (818)
Q Consensus 708 ~~~~l~~~ip~~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~l~~~l~~~ld 787 (818)
++++|+++||++|++||+|+|+|++||.++|.++|||||++||+||||++|++||+||+++|.+|.+|+.|+++|++|||
T Consensus 13 ~~k~li~~IP~~Ke~Lf~~~i~W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd~LVdfI~~~L~~~~~pk~l~~~L~~~LD 92 (119)
T 3v53_A 13 HIKSLIEKIPTAKPELFAYPLDWSIVDSILMERRIRPWINKKIIEYIGEEEATLVDFVCSKVMAHSSPQSILDDVAMVLD 92 (119)
T ss_dssp SSHHHHHHSCSSHHHHHHSCCCTTTSCHHHHHHTHHHHHHHHHHHHTC---CHHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHhcccCChhhhhHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccc
Q 003461 788 DEAEMFVLKMWRMLIFEIKKVETGLA 813 (818)
Q Consensus 788 e~a~~fv~~lWr~life~~~~~~gl~ 813 (818)
++|+.||.+||||||||+++++.||+
T Consensus 93 eeA~~FV~kLWrlLIfe~ea~~~Gl~ 118 (119)
T 3v53_A 93 EEAEVFIVKMWRLLIYETEAKKIGLV 118 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999999996
No 2
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=99.86 E-value=4.3e-22 Score=182.34 Aligned_cols=92 Identities=21% Similarity=0.435 Sum_probs=83.9
Q ss_pred CCchhhhcccccccccchhhHhhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhc-cCCHHHHHHHHHHhhh-HHHHHHHH
Q 003461 718 KTKEELFSYEINWAVYDKHELHERMRPWISKKITEFLGEEETTLVDYIVSSTQD-HVKASQMLELLQTILD-DEAEMFVL 795 (818)
Q Consensus 718 ~~k~~lf~~~i~w~~~~~~~~~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~-~~~~~~l~~~l~~~ld-e~a~~fv~ 795 (818)
+.++.+|+++|||..|+-. .|||||++||++|||++|++|||||+++|.. +.+|+.|+++|++||| ++|..||.
T Consensus 5 ~kfp~~f~~kVD~~kV~l~----~ikpWI~kki~e~LG~EDdvlid~i~~~L~~~~~dpk~lqi~L~gFL~~e~a~~Fv~ 80 (111)
T 1mp1_A 5 LKFAECLEKKVDMSKVNLE----VIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNGKNAREFMG 80 (111)
T ss_dssp CCCCSGGGGCCCTTTSCSG----GGHHHHHHHHHHHHSSCCSHHHHHHHHHTTSSSCCHHHHHHHHTTTSCSHHHHHHHH
T ss_pred ccCCHHHhccccHHHhhHH----HHHHHHHHHHHHHcCCccHHHHHHHHHHhhccCCCHHHHHHHHHHHhCcccHHHHHH
Confidence 3467899999999999865 4699999999999999999999999999987 6899999999999999 99999999
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 003461 796 KMWRMLIFEIKKVETGLAL 814 (818)
Q Consensus 796 ~lWr~life~~~~~~gl~~ 814 (818)
+||+||||- .+...||..
T Consensus 81 eLW~LLi~a-q~~~~GIP~ 98 (111)
T 1mp1_A 81 ELWPLLLSA-QENIAGIPS 98 (111)
T ss_dssp HHHHHHHHH-TTSSSSCCH
T ss_pred HHHHHHHHh-hcCCcCcCH
Confidence 999999964 788888864
No 3
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.2e-19 Score=158.30 Aligned_cols=67 Identities=24% Similarity=0.410 Sum_probs=64.3
Q ss_pred hhhhhhhHHHHHHhhhCCchhHHHHHHHHhhhccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 003461 739 HERMRPWISKKITEFLGEEETTLVDYIVSSTQDHVKASQMLELLQTILDDEAEMFVLKMWRMLIFEI 805 (818)
Q Consensus 739 ~~~~~pwi~kki~e~lG~ee~~lv~~i~~~l~~~~~~~~l~~~l~~~lde~a~~fv~~lWr~life~ 805 (818)
.+.|||||++||++|||++|++||+||+++|..+.+|+.|+++|++|||++|+.||.+||+|||+-.
T Consensus 15 l~~lkpWI~kkv~e~LG~eD~~lVd~i~~~l~~~~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~aq 81 (92)
T 1x4q_A 15 LDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGR 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHTTCCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999999999755
No 4
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.73 E-value=1.5e-17 Score=188.56 Aligned_cols=83 Identities=18% Similarity=0.398 Sum_probs=79.0
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.++|||+|||+.|++.+|..+|..||.|..|.|+.++.+|+++|||||+|.+.++|..||..|||+.|+|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 179 a~~ 181 (437)
T 3pgw_S 179 ERG 181 (437)
T ss_pred eCC
Confidence 864
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.70 E-value=3.7e-17 Score=147.97 Aligned_cols=81 Identities=21% Similarity=0.341 Sum_probs=78.1
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
.+++|||+|||+.+++++|+.+|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.67 E-value=2.4e-16 Score=145.46 Aligned_cols=85 Identities=15% Similarity=0.243 Sum_probs=80.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.||+++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57899999999999999999999999999999999999899999999999999999999999999999999999999997
Q ss_pred hhHHH
Q 003461 180 ATREY 184 (818)
Q Consensus 180 ~~kk~ 184 (818)
.....
T Consensus 85 ~~~~~ 89 (110)
T 3s8s_A 85 KGQQR 89 (110)
T ss_dssp TTHHH
T ss_pred CCcHH
Confidence 65443
No 7
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=152.26 Aligned_cols=89 Identities=22% Similarity=0.344 Sum_probs=80.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G--~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..++|||||||+.+++++|+.+|+.|| .|..|.++.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 578999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHHHHHHHHH
Q 003461 178 DQATREYLERYVD 190 (818)
Q Consensus 178 a~~~kk~le~~k~ 190 (818)
+... .+..|..
T Consensus 134 a~~~--~~~~~e~ 144 (156)
T 3n9u_C 134 ATRQ--NLSQFEA 144 (156)
T ss_dssp CCHH--HHHHHHH
T ss_pred cCCC--cchhhhh
Confidence 8753 3444443
No 8
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=1.3e-15 Score=141.14 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=77.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999986
No 9
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.63 E-value=2.5e-16 Score=142.40 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=81.2
Q ss_pred CCccceeccCCC------CCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-eE
Q 003461 100 PQTKVYVGKIAP------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QE 172 (818)
Q Consensus 100 ~~~tLfVgNLp~------~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G-r~ 172 (818)
..++|||+|||+ .+++.+|+.+|+.||.|.++.|+.++.||+++|||||+|.+.++|.+||..|||..|+| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 478999999999 99999999999999999999999998889999999999999999999999999999999 99
Q ss_pred EEEEeehhhHHHH
Q 003461 173 LMLKVDQATREYL 185 (818)
Q Consensus 173 L~V~~a~~~kk~l 185 (818)
|.|.++....+|.
T Consensus 85 l~V~~a~~~~~~~ 97 (100)
T 3ns6_A 85 LFLYTMKDVERYN 97 (100)
T ss_dssp CEEEESHHHHHHH
T ss_pred EEEEECchhhhhh
Confidence 9999998876553
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.62 E-value=8.4e-17 Score=143.25 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=75.6
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEee
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVD 178 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G-~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~L-ng~~i~Gr~L~V~~a 178 (818)
+++|||+|||+.+++++|+.+|+.|| .|.+|.++.++.+|.++|||||+|.+.++|.+||..| |++.|+|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 7999999999999999999999999999999999876 577899999999998
Q ss_pred hhh
Q 003461 179 QAT 181 (818)
Q Consensus 179 ~~~ 181 (818)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 754
No 11
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.61 E-value=1.7e-15 Score=131.61 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=77.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35899999999999999999999999999999999999889999999999999999999999999999999999999987
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=131.86 Aligned_cols=81 Identities=16% Similarity=0.328 Sum_probs=76.9
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 4
No 13
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=136.09 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=76.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 171 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~--------~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr 171 (818)
+.++|||+|||+.+++++|+.+|+.||.|.. +.++.++.+|.++|||||+|.+.++|..||..|||..|+|+
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 5899999999999999999999999999999 99999988999999999999999999999999999999999
Q ss_pred EEEEEee
Q 003461 172 ELMLKVD 178 (818)
Q Consensus 172 ~L~V~~a 178 (818)
.|.|.++
T Consensus 92 ~l~V~~A 98 (99)
T 2la6_A 92 PIKVSFA 98 (99)
T ss_dssp BCEEEEC
T ss_pred EEEEEec
Confidence 9999987
No 14
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.61 E-value=2.1e-15 Score=130.49 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=76.8
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999865
No 15
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=4.1e-15 Score=131.84 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=76.6
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 5889999999999999999999999999999999999888999999999999999999999999999999999999987
No 16
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.61 E-value=6.3e-16 Score=139.19 Aligned_cols=81 Identities=20% Similarity=0.375 Sum_probs=75.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCc--eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc----eeCCeEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGT--VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQEL 173 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~--V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~----~i~Gr~L 173 (818)
.-.||||+|||+.+|+++|+++|+.||. |..|+++.++.+|.++|||||+|.+.++|.+||..|||. .|+|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4679999999999999999999999995 679999999999999999999999999999999999996 5999999
Q ss_pred EEEeehh
Q 003461 174 MLKVDQA 180 (818)
Q Consensus 174 ~V~~a~~ 180 (818)
.|.|+..
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 17
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.61 E-value=2.1e-15 Score=134.67 Aligned_cols=82 Identities=27% Similarity=0.427 Sum_probs=78.6
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
|.++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred hh
Q 003461 180 AT 181 (818)
Q Consensus 180 ~~ 181 (818)
..
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 18
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.61 E-value=5.5e-15 Score=140.79 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=78.8
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34588999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 119 a~~ 121 (139)
T 1u6f_A 119 AAS 121 (139)
T ss_dssp SSC
T ss_pred CCC
Confidence 864
No 19
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.4e-15 Score=138.62 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=78.1
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
....++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+|| .|||+.|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 345789999999999999999999999999999999999888999999999999999999999 8999999999999999
Q ss_pred ehhh
Q 003461 178 DQAT 181 (818)
Q Consensus 178 a~~~ 181 (818)
+...
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8653
No 20
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.1e-15 Score=131.94 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=77.7
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 35889999999999999999999999999999999999888999999999999999999999999999999999999987
Q ss_pred h
Q 003461 179 Q 179 (818)
Q Consensus 179 ~ 179 (818)
.
T Consensus 93 ~ 93 (95)
T 2cqc_A 93 S 93 (95)
T ss_dssp S
T ss_pred C
Confidence 5
No 21
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.59 E-value=8.2e-16 Score=135.99 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=72.6
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G--~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
.+|||||||+.+++++|+.+|+.|| .|.++.++.++.+|+++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999999886
Q ss_pred hh
Q 003461 180 AT 181 (818)
Q Consensus 180 ~~ 181 (818)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 53
No 22
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=135.28 Aligned_cols=82 Identities=21% Similarity=0.404 Sum_probs=78.4
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||+.|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35899999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 93 ~~ 94 (105)
T 1x5u_A 93 SA 94 (105)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 23
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.59 E-value=5.1e-15 Score=136.58 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=78.2
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 103 ~~ 104 (115)
T 2cpz_A 103 RS 104 (115)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 24
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.3e-15 Score=133.16 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=78.4
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45899999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 86 ~~ 87 (99)
T 1whw_A 86 TI 87 (99)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 25
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.59 E-value=3.9e-15 Score=136.15 Aligned_cols=82 Identities=22% Similarity=0.237 Sum_probs=78.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 64
No 26
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.8e-15 Score=133.61 Aligned_cols=81 Identities=23% Similarity=0.388 Sum_probs=77.4
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 468999999999999999999999999999999999998899999999999999999999999 8999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 87 ~~ 88 (99)
T 2dgs_A 87 EP 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 27
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.7e-15 Score=134.31 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=78.5
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35899999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 90 ~~ 91 (102)
T 2cqb_A 90 KP 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 28
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=132.67 Aligned_cols=81 Identities=23% Similarity=0.436 Sum_probs=77.9
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
++++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||+.|+|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 58899999999999999999999999999999999998899999999999999999999999999999999999999885
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 84 ~ 84 (95)
T 2dnz_A 84 E 84 (95)
T ss_dssp C
T ss_pred c
Confidence 4
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.58 E-value=3.1e-15 Score=138.59 Aligned_cols=78 Identities=18% Similarity=0.378 Sum_probs=73.5
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
.++|||||||+.+++++|+.+|+.||.|.+|+|+.+. +.++|||||+|.+.++|.+||..|||+.|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 6789999999999999999999999999999999983 56899999999999999999999999999999999998754
No 30
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.8e-15 Score=134.62 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=78.6
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||+.|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45899999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 93 ~~ 94 (103)
T 2cq0_A 93 KP 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 31
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.3e-15 Score=133.03 Aligned_cols=81 Identities=17% Similarity=0.374 Sum_probs=77.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~-ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
+.++|||+|||+.+++++|..+|+.||.|..+ .++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 58999999999999999999999999999999 99999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 84 ~~ 85 (96)
T 1x5t_A 84 FK 85 (96)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 32
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=3.3e-15 Score=135.60 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=77.9
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++.+|..+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 102 ~ 102 (106)
T 1p27_B 102 V 102 (106)
T ss_dssp E
T ss_pred C
Confidence 4
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.58 E-value=7.4e-15 Score=135.36 Aligned_cols=82 Identities=16% Similarity=0.319 Sum_probs=78.5
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 45899999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 93 ~~ 94 (115)
T 2dgo_A 93 TR 94 (115)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 34
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=136.93 Aligned_cols=82 Identities=23% Similarity=0.436 Sum_probs=78.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.++++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 35899999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 104 ~~ 105 (108)
T 2jrs_A 104 TE 105 (108)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 35
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.2e-15 Score=135.10 Aligned_cols=82 Identities=21% Similarity=0.337 Sum_probs=78.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 35899999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 91 ~~ 92 (103)
T 2dnm_A 91 RY 92 (103)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 36
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8.6e-15 Score=131.55 Aligned_cols=81 Identities=17% Similarity=0.361 Sum_probs=77.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 357899999999999999999999999999999999996 9999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 94 ~~ 95 (100)
T 2do4_A 94 NS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 37
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=6.7e-15 Score=134.52 Aligned_cols=81 Identities=19% Similarity=0.363 Sum_probs=78.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC------CceeCCeEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN------KFNIDGQEL 173 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln------g~~i~Gr~L 173 (818)
+.++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||..|| |+.|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l 93 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL 93 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEE
Confidence 58899999999999999999999999999999999998899999999999999999999999999 999999999
Q ss_pred EEEeehh
Q 003461 174 MLKVDQA 180 (818)
Q Consensus 174 ~V~~a~~ 180 (818)
.|.++..
T Consensus 94 ~v~~a~~ 100 (111)
T 1x4h_A 94 KVDLAVT 100 (111)
T ss_dssp EEECCCC
T ss_pred EEEECCC
Confidence 9998864
No 38
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.57 E-value=4.4e-15 Score=134.75 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=78.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee---CCeEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQELML 175 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i---~Gr~L~V 175 (818)
.+.++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|..||..|||..+ +|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3588999999999999999999999999999999999988999999999999999999999999999988 8999999
Q ss_pred Eeehh
Q 003461 176 KVDQA 180 (818)
Q Consensus 176 ~~a~~ 180 (818)
.++..
T Consensus 91 ~~a~~ 95 (106)
T 2dgp_A 91 KPADS 95 (106)
T ss_dssp EECCC
T ss_pred EECCc
Confidence 99864
No 39
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=7.1e-15 Score=133.47 Aligned_cols=83 Identities=20% Similarity=0.417 Sum_probs=78.5
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeec-CCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELML 175 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d-~~tGk~kGfgFVeF~s~esA~~Al~~L-ng~~i~Gr~L~V 175 (818)
..+.++|||+|||+.+++++|+.+|..||.|..|.++.+ +.+|.++|||||+|.+.++|.+||..| ||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346899999999999999999999999999999999998 679999999999999999999999999 999999999999
Q ss_pred Eeehh
Q 003461 176 KVDQA 180 (818)
Q Consensus 176 ~~a~~ 180 (818)
.|+..
T Consensus 92 ~~a~~ 96 (107)
T 2cph_A 92 EWADS 96 (107)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99864
No 40
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.57 E-value=8.2e-15 Score=133.20 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=76.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|..+|..||.|..+.++.++ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 58999999999999999999999999999999999997 99999999999999999999999999999999999999874
No 41
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.57 E-value=8e-15 Score=128.25 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=74.8
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||.. ++..|+|+.|.|.++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence 4689999999999999999999999999999999999988999999999999999999999974 889999999999875
No 42
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.8e-15 Score=135.18 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=77.8
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCcee--------EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 170 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~--------~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G 170 (818)
.+.++|||+|||+.+++++|+.+|..||.|. .+.++.++.+|.++|||||+|.+.++|..||..|||+.|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4589999999999999999999999999999 69999998899999999999999999999999999999999
Q ss_pred eEEEEEeehh
Q 003461 171 QELMLKVDQA 180 (818)
Q Consensus 171 r~L~V~~a~~ 180 (818)
+.|.|.++..
T Consensus 93 ~~l~V~~a~~ 102 (113)
T 2cpe_A 93 SKLKVSLARK 102 (113)
T ss_dssp EECEEECSSC
T ss_pred CEEEEEECCC
Confidence 9999998864
No 43
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=5.8e-15 Score=133.02 Aligned_cols=82 Identities=18% Similarity=0.361 Sum_probs=78.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35889999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 90 ~~ 91 (102)
T 1x5s_A 90 GK 91 (102)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 44
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.1e-15 Score=132.68 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=78.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCcee-EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE----L 173 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~-~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~----L 173 (818)
.+.++|||+|||+.+++++|+.+|..||.|. .+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3589999999999999999999999999999 9999999889999999999999999999999999999999999 9
Q ss_pred EEEeehh
Q 003461 174 MLKVDQA 180 (818)
Q Consensus 174 ~V~~a~~ 180 (818)
.|.|+..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9998754
No 45
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.56 E-value=1.8e-15 Score=136.50 Aligned_cols=79 Identities=20% Similarity=0.429 Sum_probs=74.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~-~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
..++|||||||+.+++++|+.+|+.|| |..+.++.++ .+|+++|||||+|.+.++|.+|| .|||..|+|+.|.|.++
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a 95 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVA 95 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEec
Confidence 589999999999999999999999999 9999999987 58999999999999999999999 89999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 96 ~~ 97 (100)
T 2j76_E 96 DQ 97 (100)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 46
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.56 E-value=7.1e-15 Score=130.56 Aligned_cols=80 Identities=23% Similarity=0.435 Sum_probs=76.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++ +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 357899999999999999999999999999999999996 5999999999999999999999999999999999999987
Q ss_pred h
Q 003461 179 Q 179 (818)
Q Consensus 179 ~ 179 (818)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=5.4e-15 Score=132.25 Aligned_cols=81 Identities=20% Similarity=0.409 Sum_probs=76.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCC---CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~---tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.++. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 578999999999999999999999999999999998865 56899999999999999999999999999999999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
++..
T Consensus 84 ~a~~ 87 (98)
T 2cpf_A 84 ISER 87 (98)
T ss_dssp CSSC
T ss_pred EccC
Confidence 8864
No 48
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.56 E-value=2.6e-15 Score=136.82 Aligned_cols=83 Identities=13% Similarity=0.266 Sum_probs=75.8
Q ss_pred CCCccceeccCCCCC------CHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-
Q 003461 99 KPQTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ- 171 (818)
Q Consensus 99 ~~~~tLfVgNLp~~v------te~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr- 171 (818)
...++|||||||+.+ ++.+|+.+|+.||.|..|.++. .+|.++|||||+|.+.++|..||..|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 347899999999999 6789999999999999999883 5899999999999999999999999999999998
Q ss_pred EEEEEeehhhHH
Q 003461 172 ELMLKVDQATRE 183 (818)
Q Consensus 172 ~L~V~~a~~~kk 183 (818)
.|.|.++....+
T Consensus 91 ~l~V~~a~~~~k 102 (105)
T 2nlw_A 91 TFRVNLFTDFDK 102 (105)
T ss_dssp EEEEECSCCCCC
T ss_pred eEEEEEcchHhh
Confidence 999999875543
No 49
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.56 E-value=1e-14 Score=132.14 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=77.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC---eEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG---QELML 175 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G---r~L~V 175 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|.+||..|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 358999999999999999999999999999999999996 89999999999999999999999999999998 99999
Q ss_pred Eeehh
Q 003461 176 KVDQA 180 (818)
Q Consensus 176 ~~a~~ 180 (818)
.|+..
T Consensus 92 ~~a~~ 96 (105)
T 2dnh_A 92 KFADT 96 (105)
T ss_dssp EESCS
T ss_pred EECcc
Confidence 99865
No 50
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.56 E-value=7.1e-15 Score=128.43 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=76.1
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCC-CccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk-~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+++|||+|||+.+++++|..+|+.||.|..+.++.+..++. ++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 478999999999999999999999999999999999876665 8999999999999999999999999999999999988
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 51
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.5e-15 Score=134.76 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=74.9
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||..+++++|+.+|+.||.|..+.++.+. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 358999999999999999999999999999999999883 558999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 105 ~~ 106 (109)
T 2err_A 105 TA 106 (109)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 52
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=5.4e-15 Score=134.91 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=75.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
...++|||||||+.+++++|+.+|+.||.|.+|.++.++. |.++|||||+|.+.++|..||. +||+.|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3578999999999999999999999999999999999975 9999999999999999999999 8999999999999987
Q ss_pred h
Q 003461 179 Q 179 (818)
Q Consensus 179 ~ 179 (818)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 5
No 53
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.55 E-value=7.6e-15 Score=139.16 Aligned_cols=82 Identities=16% Similarity=0.225 Sum_probs=78.4
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 124 ~~ 125 (129)
T 2kxn_B 124 IT 125 (129)
T ss_dssp SS
T ss_pred cC
Confidence 65
No 54
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=1.3e-14 Score=131.20 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=76.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..|| |..|.++.++.+|.++|||||+|.+.++|.+|| .|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3589999999999999999999999998 999999999889999999999999999999999 89999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 91 ~~ 92 (103)
T 2dng_A 91 EG 92 (103)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 55
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.55 E-value=1.1e-14 Score=127.58 Aligned_cols=80 Identities=24% Similarity=0.409 Sum_probs=76.2
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 3689999999999999999999999999999999999889999999999999999999999 899999999999999875
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 56
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.55 E-value=1e-14 Score=133.92 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=74.6
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|.+||..+ |..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 346899999999999999999999999999999999999889999999999999999999999975 5999999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 864
No 57
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.6e-14 Score=129.09 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=75.1
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.++|||+|||+.+++++|+.+|+.||.|..|.++.++ +.++|||||+|.+.++|.+||..|||..|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3458999999999999999999999999999999999984 34789999999999999999999999999999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 90 a~~ 92 (103)
T 2cqi_A 90 ATT 92 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 58
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.55 E-value=8e-15 Score=137.34 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=77.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|..+|..||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 101 ~ 101 (126)
T 3ex7_B 101 V 101 (126)
T ss_dssp E
T ss_pred C
Confidence 4
No 59
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.5e-15 Score=134.82 Aligned_cols=83 Identities=29% Similarity=0.536 Sum_probs=79.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hhh
Q 003461 179 QAT 181 (818)
Q Consensus 179 ~~~ 181 (818)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 764
No 60
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=4.7e-14 Score=133.86 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=76.2
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35899999999999999999999999999999999999889999999999999999999999999999999999999875
No 61
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=9.5e-15 Score=130.66 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=76.2
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 57899999999999999999999999999988888888899999999999999999999999999999999999999875
No 62
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=131.10 Aligned_cols=79 Identities=23% Similarity=0.454 Sum_probs=75.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCC-CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~t-Gk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
+.++|||+|||+.+++++|+.+|..|| |..|.|+.++.+ |.++|||||+|.+.++|.+|| .|||..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 579999999999999999999999999 999999999877 999999999999999999999 89999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 92 ~~ 93 (104)
T 1wi8_A 92 DQ 93 (104)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 63
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.5e-14 Score=130.75 Aligned_cols=80 Identities=25% Similarity=0.343 Sum_probs=76.5
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..|.++.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 36899999999999999999999999999999999987 8999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 91 ~~ 92 (103)
T 2d9p_A 91 QR 92 (103)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 64
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.54 E-value=1.1e-14 Score=135.37 Aligned_cols=81 Identities=15% Similarity=0.322 Sum_probs=77.2
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.+. +|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 357899999999999999999999999999999999996 9999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 65
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.5e-14 Score=133.70 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=77.1
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|..||.. ||+.|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 4578999999999999999999999999999999999988999999999999999999999997 999999999999988
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 104 ~~ 105 (116)
T 1x4b_A 104 VA 105 (116)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 66
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.54 E-value=7.6e-14 Score=130.52 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=77.6
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..|.++.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 358899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 112 ~~ 113 (124)
T 2kt5_A 112 AS 113 (124)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 67
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.54 E-value=6.1e-15 Score=125.40 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=72.0
Q ss_pred cceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 103 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 103 tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
+|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+. |||..|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998899999999999999999999998 8999999999999875
No 68
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.54 E-value=1.4e-14 Score=127.97 Aligned_cols=80 Identities=25% Similarity=0.423 Sum_probs=75.7
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35899999999999999999999999999999999884 8999999999999999999999999999999999999988
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 84 ~~ 85 (92)
T 2dgv_A 84 RN 85 (92)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 69
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.4e-14 Score=131.25 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=77.5
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|.+||..||+ .|+|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34689999999999999999999999999999999999988999999999999999999999999998 89999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 93 a~~ 95 (116)
T 2cqd_A 93 AYL 95 (116)
T ss_dssp STT
T ss_pred ccc
Confidence 853
No 70
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.53 E-value=5.3e-15 Score=140.09 Aligned_cols=81 Identities=16% Similarity=0.358 Sum_probs=76.9
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeE--EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc----eeCCeE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQE 172 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~--~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~----~i~Gr~ 172 (818)
.+.++|||||||+.+++++|+.+|..||.|.. |.|+.++.+|+++|||||+|.+. +|.+||..|||. .|+|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45789999999999999999999999999977 99999988999999999999999 999999999999 999999
Q ss_pred EEEEeehh
Q 003461 173 LMLKVDQA 180 (818)
Q Consensus 173 L~V~~a~~ 180 (818)
|.|.++..
T Consensus 100 l~V~~a~~ 107 (131)
T 2m2b_A 100 INVEFAKG 107 (131)
T ss_dssp CCCEECCC
T ss_pred EEEEECCC
Confidence 99999865
No 71
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.8e-14 Score=127.36 Aligned_cols=80 Identities=19% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..|.++.+. +.++|||||+|.+.++|.+||..|||+.|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 458999999999999999999999999999999999884 348999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 91 ~~ 92 (103)
T 2cq3_A 91 TA 92 (103)
T ss_dssp CS
T ss_pred cc
Confidence 64
No 72
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.53 E-value=8.4e-15 Score=130.11 Aligned_cols=80 Identities=21% Similarity=0.217 Sum_probs=75.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999888888899999999999999999999999999999999999999874
No 73
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=3.3e-14 Score=130.66 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=76.7
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||+.|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 358899999999999999999999999999999999996 7999999999999999999999999999999999999987
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 74
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=131.78 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=77.1
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhh-cCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELMLK 176 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~-~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~-i~Gr~L~V~ 176 (818)
.+.++|||+|||+.+++++|+.+|.. ||.|..+.++.++ +|.++|||||+|.+.++|..||..|||.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 35789999999999999999999999 9999999999997 99999999999999999999999999999 999999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
++..
T Consensus 86 ~a~~ 89 (104)
T 2dhg_A 86 VAIP 89 (104)
T ss_dssp BCCC
T ss_pred EccC
Confidence 8854
No 75
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3.3e-15 Score=130.12 Aligned_cols=79 Identities=18% Similarity=0.295 Sum_probs=75.5
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|+|.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 5889999999999999999999999999999999999889999999999999999999999999999999999988764
No 76
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.8e-14 Score=127.35 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=75.9
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|..||. +++.|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 3458899999999999999999999999999999999998899999999999999999999998 57899999999998
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 90 a~~ 92 (103)
T 2cqg_A 90 PNS 92 (103)
T ss_dssp CCT
T ss_pred cCC
Confidence 864
No 77
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-14 Score=130.16 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=77.6
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||.. ||+.|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34689999999999999999999999999999999999988999999999999999999999998 99999999999998
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 92 a~~ 94 (105)
T 2dh8_A 92 CTP 94 (105)
T ss_dssp SCC
T ss_pred ccC
Confidence 754
No 78
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=3e-14 Score=127.51 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=73.1
Q ss_pred CCccceeccCCCCCCHHHHH----HHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~----~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
..++|||+|||+.+++++|+ .+|+.||.|..|.++.++.+ +|||||+|.+.++|.+||..|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 47899999999999999999 99999999999999988644 899999999999999999999999999999999
Q ss_pred Eeehh
Q 003461 176 KVDQA 180 (818)
Q Consensus 176 ~~a~~ 180 (818)
.++..
T Consensus 85 ~~a~~ 89 (96)
T 2dgx_A 85 SLATG 89 (96)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99864
No 79
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.53 E-value=2.4e-14 Score=140.84 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=77.6
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++.+|..+|+.||.|..|.|+.++.+|.++|||||+|.+.+.|..||..|||+.|+|+.|.|.|+.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 151 ~ 151 (165)
T 1rk8_A 151 V 151 (165)
T ss_dssp E
T ss_pred C
Confidence 5
No 80
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.53 E-value=1.4e-14 Score=135.31 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=76.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4789999999999999999999999999999999999889999999999999999999999 799999999999999875
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 81
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=6.9e-15 Score=125.41 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=73.3
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..+| ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998899999999999999999999999999 9999999999886
No 82
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.52 E-value=3.6e-14 Score=137.99 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=78.7
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||+.|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35899999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 83
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.52 E-value=3.5e-14 Score=137.99 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=78.1
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 149 ~ 149 (158)
T 2kn4_A 149 Y 149 (158)
T ss_dssp C
T ss_pred C
Confidence 4
No 84
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=4.9e-14 Score=124.37 Aligned_cols=79 Identities=16% Similarity=0.232 Sum_probs=75.1
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
...++|||+|||+.+++++|+.+|..| .|..+.++.+ .+|+++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 357899999999999999999999999 9999999999 799999999999999999999999 9999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 85 ~~ 86 (91)
T 2dgw_A 85 KS 86 (91)
T ss_dssp SS
T ss_pred Cc
Confidence 64
No 85
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.2e-14 Score=131.50 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=75.9
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCce-eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V-~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
.+.++|||+|||+.+++++|+.+|..||.| ..|.|+.++ +|+++|||||+|.+.++|.+||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 357899999999999999999999999999 899999997 999999999999999999999997 99999999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 91 a~~ 93 (114)
T 2cpy_A 91 VTL 93 (114)
T ss_dssp ECH
T ss_pred CCH
Confidence 865
No 86
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.51 E-value=5.2e-15 Score=130.27 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=74.0
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehhh
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 181 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~~ 181 (818)
++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.+ |..|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999999999999999998753
No 87
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.7e-14 Score=135.27 Aligned_cols=80 Identities=13% Similarity=0.267 Sum_probs=72.6
Q ss_pred CCccceeccCCCCCCHHHHH----HHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~----~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
+.++|||||||+.+++++|+ .+|+.||.|..|.+. .+|+++|||||+|.+.++|..||..|||..|.|+.|.|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 47899999999999998765 799999999998774 37899999999999999999999999999999999999
Q ss_pred EeehhhH
Q 003461 176 KVDQATR 182 (818)
Q Consensus 176 ~~a~~~k 182 (818)
.|+....
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9997653
No 88
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.51 E-value=6e-15 Score=132.81 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=74.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|.. .++.+..+|.++|||||+|.+.++|.+||. |||..|+|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999988 666776789999999999999999999999 9999999999999988
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 89
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.51 E-value=4.2e-14 Score=131.76 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=75.2
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCc---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~---V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
...++|||+|||+.+++++|+.+|..||. |..|.|+.++ .|+++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~-~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR-EGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS-SSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC-CCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 35789999999999999999999999999 8999999996 49999999999999999999999 8999999999999
Q ss_pred Eeehh
Q 003461 176 KVDQA 180 (818)
Q Consensus 176 ~~a~~ 180 (818)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98864
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.1e-13 Score=126.45 Aligned_cols=78 Identities=19% Similarity=0.366 Sum_probs=72.9
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|+.+|..||.|..|.+.. ++.++|||||+|.+.++|..||..||+..|+|+.|.|.|+.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 578999999999999999999999999999999855 46789999999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 98 ~ 98 (109)
T 1x4a_A 98 S 98 (109)
T ss_dssp C
T ss_pred c
Confidence 4
No 91
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.6e-14 Score=130.30 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=76.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCc-eeEEEEe-ecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELML 175 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~-V~~~ki~-~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln--g~~i~Gr~L~V 175 (818)
+.++|||+|||+.+++++|+.+|..||. |..+.++ .+..+|.++|||||+|.+.++|..||..|| ++.|+|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5789999999999999999999999998 9999998 777889999999999999999999999996 59999999999
Q ss_pred Eeehh
Q 003461 176 KVDQA 180 (818)
Q Consensus 176 ~~a~~ 180 (818)
.|+..
T Consensus 87 ~~a~~ 91 (109)
T 2dis_A 87 DWAEP 91 (109)
T ss_dssp EESCS
T ss_pred EEcCC
Confidence 99864
No 92
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.50 E-value=4.9e-13 Score=141.53 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=71.4
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 176 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~-Gr~L~V~ 176 (818)
..+.++|||+|||..+++++|+.+|+.||.|..|.++.+. +|||||+|.+.++|.+||..|||..|+ |+.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4467899999999999999999999999999999998652 589999999999999999999999999 9999999
Q ss_pred eeh
Q 003461 177 VDQ 179 (818)
Q Consensus 177 ~a~ 179 (818)
|+.
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 984
No 93
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.50 E-value=5.7e-14 Score=132.37 Aligned_cols=90 Identities=12% Similarity=0.220 Sum_probs=78.0
Q ss_pred CccceeccC----CCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCC----HHH----HHHHHH--HhCCc
Q 003461 101 QTKVYVGKI----APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES----AEG----VLRALR--LLNKF 166 (818)
Q Consensus 101 ~~tLfVgNL----p~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s----~es----A~~Al~--~Lng~ 166 (818)
++.|||||| |+.+++..|+.+|+.||.|.+|.++.|+.||.++|||||+|.+ +.. |.+|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 478999999 9999999999999999999999999999999999999999996 433 788888 78999
Q ss_pred eeCCeEEEEEeehhh--HHHHHHHHH
Q 003461 167 NIDGQELMLKVDQAT--REYLERYVD 190 (818)
Q Consensus 167 ~i~Gr~L~V~~a~~~--kk~le~~k~ 190 (818)
.|+|+.|+|.++... .+.++....
T Consensus 82 ~I~Gr~irV~ln~~g~~~~~~~~~i~ 107 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSILNNIISKFVE 107 (136)
T ss_dssp EETTEEEEEEECCTTHHHHHHHHHHH
T ss_pred eecCcEEEEEECcccHHHHHHHHHHH
Confidence 999999999998644 445555554
No 94
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.3e-14 Score=130.63 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=70.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||||||..+++++|+.+|+.||.|..+.++ .++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 47899999999999999999999999999999986 356999999999999999999999999999999999875
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 95
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.49 E-value=7e-14 Score=123.67 Aligned_cols=74 Identities=12% Similarity=0.235 Sum_probs=69.9
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
.+.-||||||++.++++.|+.+|..||+|.+++++. ++|||||+|.+.++|..|+..|||..|+|+.|.|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 57999999999999999999999999999999999984
No 96
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.3e-14 Score=132.48 Aligned_cols=81 Identities=21% Similarity=0.245 Sum_probs=74.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|+.+|..||.|..+.++.+..+|+++|||||+|.+.++|.+||. |||..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 57899999999999999999999999999886666666799999999999999999999999 99999999999999986
Q ss_pred hh
Q 003461 180 AT 181 (818)
Q Consensus 180 ~~ 181 (818)
..
T Consensus 103 ~~ 104 (124)
T 1wel_A 103 KK 104 (124)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 97
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=1.1e-13 Score=127.33 Aligned_cols=81 Identities=25% Similarity=0.346 Sum_probs=76.2
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee--------CC
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--------DG 170 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i--------~G 170 (818)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.++ +|.++|||||+|.+.++|..||..|||..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 457899999999999999999999999999999999997 999999999999999999999999999999 57
Q ss_pred eEEEEEeehh
Q 003461 171 QELMLKVDQA 180 (818)
Q Consensus 171 r~L~V~~a~~ 180 (818)
+.|.|.|+.+
T Consensus 102 ~~l~v~~a~p 111 (114)
T 1x5o_A 102 EPLLCKFSGP 111 (114)
T ss_dssp SCBEEEECCC
T ss_pred CceeEEccCC
Confidence 8899999864
No 98
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=4e-14 Score=130.23 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=74.8
Q ss_pred CCccceeccCCCCCCHHHHH---HHHhhcCceeEEEEeecCCCC---CCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003461 100 PQTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPSNG---TPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 173 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~---~lF~~~G~V~~~ki~~d~~tG---k~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L 173 (818)
..++|||+|||+.+++++|. .+|..||.|..+.++.+..+| .++|||||+|.+.++|.+||..|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 47899999999999999999 999999999999999886544 566999999999999999999999999999999
Q ss_pred EEEeehh
Q 003461 174 MLKVDQA 180 (818)
Q Consensus 174 ~V~~a~~ 180 (818)
.|.|+..
T Consensus 94 ~V~~a~~ 100 (111)
T 2cpi_A 94 KASLGTT 100 (111)
T ss_dssp EEESCCC
T ss_pred EEEeccc
Confidence 9998864
No 99
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.49 E-value=1.5e-14 Score=125.23 Aligned_cols=73 Identities=15% Similarity=0.334 Sum_probs=68.1
Q ss_pred CccceeccCCCCC------CHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 003461 101 QTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 173 (818)
Q Consensus 101 ~~tLfVgNLp~~v------te~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr-~L 173 (818)
.++|||||||+.+ ++++|+.+|+.||.|..+.++. .+|+++|||||+|.+.++|..||..|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 6799999999999999999873 5899999999999999999999999999999999 88
Q ss_pred EE
Q 003461 174 ML 175 (818)
Q Consensus 174 ~V 175 (818)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 100
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.48 E-value=3.1e-14 Score=126.90 Aligned_cols=80 Identities=14% Similarity=0.308 Sum_probs=74.3
Q ss_pred CCCccceeccCCCCCCHHHHH----HHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 174 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~----~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~ 174 (818)
.+.++|||+|||+.+++++|+ .+|+.||.|..+.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 358899999999999999999 9999999999998863 578899999999999999999999999999999999
Q ss_pred EEeehhh
Q 003461 175 LKVDQAT 181 (818)
Q Consensus 175 V~~a~~~ 181 (818)
|.++...
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9998764
No 101
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.48 E-value=7e-14 Score=128.77 Aligned_cols=80 Identities=14% Similarity=0.269 Sum_probs=74.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|..+|+.||.|..+.++.+ +.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 4789999999999999999999999999999999864 5669999999999999999999999999999999999997
Q ss_pred hhH
Q 003461 180 ATR 182 (818)
Q Consensus 180 ~~k 182 (818)
...
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 653
No 102
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.48 E-value=1.9e-14 Score=122.11 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=71.7
Q ss_pred cceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 103 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 103 tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
+|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||.. ++..|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999988999999999999999999999995 999999999999875
No 103
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5e-14 Score=129.12 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=69.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln--g~~i~Gr~L~V~~ 177 (818)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.+ +|||||+|.+.++|..||..|+ +..|+|+.|.|.|
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 5899999999999999999999999999999999875 5999999999999999999886 4799999999998
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 89 A~~ 91 (105)
T 1sjq_A 89 SNH 91 (105)
T ss_dssp CSS
T ss_pred cCC
Confidence 854
No 104
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.48 E-value=3e-14 Score=136.07 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=78.2
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 125 ~~ 126 (135)
T 2lea_A 125 RY 126 (135)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 105
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-13 Score=124.78 Aligned_cols=76 Identities=13% Similarity=0.173 Sum_probs=69.5
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLK 176 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~L--ng~~i~Gr~L~V~ 176 (818)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.+ +|||||+|.+.++|..||..| ++..|+|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 45889999999999999999999999999999988764 699999999999999999976 5788999999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
|+..
T Consensus 87 ~a~~ 90 (101)
T 2cq1_A 87 YSNH 90 (101)
T ss_dssp ECSC
T ss_pred EcCc
Confidence 9864
No 106
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.47 E-value=3.6e-14 Score=147.48 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=77.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G--~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..++|||+||++.+++++|+.+|..|| .|..|.|+.++.+|+++|||||+|.+.++|.+||..|||+.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 578999999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ehhh
Q 003461 178 DQAT 181 (818)
Q Consensus 178 a~~~ 181 (818)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8754
No 107
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=123.93 Aligned_cols=79 Identities=25% Similarity=0.391 Sum_probs=72.7
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.++|||+|||+.+++++|+.+|..||.| .++.+ .+|.++|||||+|.+.++|.+||..|||+.|+|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3458999999999999999999999999987 56666 6899999999999999999999999999999999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 88 a~~ 90 (101)
T 2fc9_A 88 QGP 90 (101)
T ss_dssp CSS
T ss_pred cCC
Confidence 864
No 108
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.4e-14 Score=126.22 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=74.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~-~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
...++|||+|||+.+++++|+.+|..||.|.. |.|+.+ .+|+++|||||+|.+.++|.+||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 35789999999999999999999999999987 888888 7999999999999999999999997 99999999999987
Q ss_pred eh
Q 003461 178 DQ 179 (818)
Q Consensus 178 a~ 179 (818)
+.
T Consensus 91 ~~ 92 (104)
T 1wg5_A 91 SS 92 (104)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 109
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.5e-14 Score=129.92 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=71.5
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|..+|..||.|..+.+..+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 103 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGK 103 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEcc
Confidence 57899999999999999999999999999443322222378999999999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 104 ~ 104 (115)
T 2cpx_A 104 N 104 (115)
T ss_dssp C
T ss_pred C
Confidence 4
No 110
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.5e-13 Score=123.65 Aligned_cols=79 Identities=20% Similarity=0.359 Sum_probs=72.9
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..|+ .+.++.++.+|.++|||||+|.+.++|..||..|||+.|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4589999999999999999999999774 6778888789999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 90 ~~ 91 (102)
T 2fc8_A 90 KP 91 (102)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 111
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.47 E-value=1.5e-13 Score=123.54 Aligned_cols=73 Identities=16% Similarity=0.393 Sum_probs=68.9
Q ss_pred CCccceeccCCC-CCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~-~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
+.++|||||||+ .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 589999999998 99999999999999999999883 589999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 93 ~~ 94 (97)
T 2xnq_A 93 SS 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 112
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.47 E-value=3.4e-14 Score=129.86 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=75.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCc---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~---V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
...++|||+|||+.+++++|+.+|..||. |..|.|+.++. |+++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 45889999999999999999999999998 89999999965 9999999999999999999999 8999999999999
Q ss_pred Eeehh
Q 003461 176 KVDQA 180 (818)
Q Consensus 176 ~~a~~ 180 (818)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 98865
No 113
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.46 E-value=1.2e-13 Score=140.92 Aligned_cols=82 Identities=20% Similarity=0.349 Sum_probs=77.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.+||||||||+.+++++|+.+|+.||.|.+|.|+.++.+|+++|||||+|.+.++|..||..||+..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 47899999999999999999999999999999999998999999999999999999999999999999999999999876
Q ss_pred hh
Q 003461 180 AT 181 (818)
Q Consensus 180 ~~ 181 (818)
..
T Consensus 94 ~~ 95 (213)
T 4f02_A 94 RD 95 (213)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 114
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=7.1e-14 Score=127.05 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=72.5
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|+++|..|| +..|.|+.++ +|+++|||||+|.+.++|.+||. +|+..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 478999999999999999999999999 4599999996 99999999999999999999995 79999999999998775
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 91 ~ 91 (102)
T 1wez_A 91 T 91 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 115
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.45 E-value=9.3e-14 Score=133.16 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=74.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCc---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~---V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
..++|||+|||+.+|+++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. |||..|+|+.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 5789999999999999999999999999 89999999965 9999999999999999999999 99999999999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8754
No 116
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=2.3e-13 Score=124.39 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=70.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-----eEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-----QELM 174 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G-----r~L~ 174 (818)
..++|||+|||+.+++++|+.+|..||.|..|.|+.+ |||||+|.+.++|..||..|||..|+| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 4789999999999999999999999999999999876 899999999999999999999999999 9999
Q ss_pred EEeehh
Q 003461 175 LKVDQA 180 (818)
Q Consensus 175 V~~a~~ 180 (818)
|.++..
T Consensus 87 V~~a~~ 92 (108)
T 1x4c_A 87 VKVDGP 92 (108)
T ss_dssp EEESSC
T ss_pred EEeCCC
Confidence 998865
No 117
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.45 E-value=1.7e-13 Score=125.74 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=70.5
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||||||+.+++++|+.+|+.||.|..+.++ +|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 358999999999999999999999999999999987 589999999999999999999999999999999998
Q ss_pred hhh
Q 003461 179 QAT 181 (818)
Q Consensus 179 ~~~ 181 (818)
...
T Consensus 101 ~~~ 103 (108)
T 2jvo_A 101 KLP 103 (108)
T ss_dssp SCC
T ss_pred cCC
Confidence 653
No 118
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=124.29 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=69.7
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMLK 176 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~--i~Gr~L~V~ 176 (818)
.|+++|||+|||+.+++++|..+|+.||.|.++.++. .+|||||+|.+.++|..||..|||.. |+|+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 3688999999999999999999999999999999875 35899999999999999999999875 889999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
|+..
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 9864
No 119
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.45 E-value=7.8e-14 Score=124.18 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=71.5
Q ss_pred CCCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 98 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..+.++|||+|||+.+++++|+.+|..||.|..+ ..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3468999999999999999999999999988766 24789999999999999999999999999999999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 854
No 120
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=2.9e-13 Score=117.63 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=69.6
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEe
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKV 177 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~L-ng~~i~Gr~L~V~~ 177 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..| ||..|+|+.|.|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45789999999999999999999999999999999864 589999999999999999988 99999999999998
Q ss_pred e
Q 003461 178 D 178 (818)
Q Consensus 178 a 178 (818)
+
T Consensus 84 a 84 (85)
T 2ytc_A 84 G 84 (85)
T ss_dssp C
T ss_pred c
Confidence 6
No 121
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.45 E-value=1.9e-13 Score=126.47 Aligned_cols=77 Identities=16% Similarity=0.172 Sum_probs=70.9
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G-~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
..++|||+|||+.+++++|+.+|..|| .|..+.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 478999999999999999999999999 899988853 357899999999999999999999999999999999987
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 103 ~~ 104 (111)
T 2jvr_A 103 DN 104 (111)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 122
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.44 E-value=6.9e-14 Score=126.08 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=75.3
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.++ +|.++|||||+|.+.++|..||. ||+.|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 57899999999999999999999999999999999997 99999999999999999999999 9999999999999887
Q ss_pred hh
Q 003461 180 AT 181 (818)
Q Consensus 180 ~~ 181 (818)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 123
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.44 E-value=3.7e-14 Score=135.92 Aligned_cols=83 Identities=16% Similarity=0.259 Sum_probs=72.5
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEE--Eee---cCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK--RAQ---YPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 173 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~k--i~~---d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L 173 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..+. ++. ...+|.++|||||+|.+.++|..||..|||+.|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 3578999999999999999999999999998751 111 12479999999999999999999999999999999999
Q ss_pred EEEeehhh
Q 003461 174 MLKVDQAT 181 (818)
Q Consensus 174 ~V~~a~~~ 181 (818)
.|.++...
T Consensus 123 ~V~~a~~~ 130 (143)
T 3egn_A 123 VVQFARSA 130 (143)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998653
No 124
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=8.5e-14 Score=126.98 Aligned_cols=75 Identities=12% Similarity=0.110 Sum_probs=69.3
Q ss_pred CCccceeccCCC-CCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 003461 100 PQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELMLK 176 (818)
Q Consensus 100 ~~~tLfVgNLp~-~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng--~~i~Gr~L~V~ 176 (818)
+.++|||+|||+ .+++++|+.+|..||.|.++.|+.+ +|||||+|.+.++|..||..||+ ..|+|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 588999999999 9999999999999999999999765 38999999999999999998886 46999999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
++..
T Consensus 88 ~a~~ 91 (102)
T 1x4d_A 88 LSQK 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9874
No 125
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=120.16 Aligned_cols=74 Identities=19% Similarity=0.399 Sum_probs=69.7
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++ +|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 468999999999999999999999999999999986 479999999999999999999999999999999988
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 78 ~~ 79 (90)
T 2dnq_A 78 KN 79 (90)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 126
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.5e-13 Score=124.12 Aligned_cols=76 Identities=20% Similarity=0.315 Sum_probs=71.5
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||..+++++|+.+|..||.|..|.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 35889999999999999999999999999999999875 689999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 97 ~~ 98 (109)
T 1x4g_A 97 KE 98 (109)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 127
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2e-13 Score=122.19 Aligned_cols=76 Identities=17% Similarity=0.291 Sum_probs=69.9
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|+.+|..||.|. +.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 478999999999999999999999999996 66654 4788999999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 93 ~ 93 (97)
T 2e5j_A 93 Q 93 (97)
T ss_dssp C
T ss_pred C
Confidence 5
No 128
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=3.4e-13 Score=124.32 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=72.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|+.+|..| .|..|.|+.++ +|+++|||||+|.+.++|.+|| .|||..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 36799999999999999999999999 89999999996 5999999999999999999999 589999999999998875
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 129
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.43 E-value=4.5e-13 Score=129.16 Aligned_cols=80 Identities=18% Similarity=0.324 Sum_probs=77.2
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999985
No 130
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.43 E-value=2.2e-13 Score=136.06 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=78.0
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||+.|+|+.|.|.|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 458899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred hhh
Q 003461 179 QAT 181 (818)
Q Consensus 179 ~~~ 181 (818)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 654
No 131
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=3.6e-13 Score=120.35 Aligned_cols=75 Identities=16% Similarity=0.397 Sum_probs=70.2
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~--Gr~L~V~~ 177 (818)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..||..|||..|+ |+.|.|.|
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 5789999999999999999999999999999988654 689999999999999999999999999 99999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 90 a~~ 92 (97)
T 1why_A 90 AKS 92 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 132
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.1e-13 Score=127.74 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=69.6
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln--g~~i~Gr~L~V~~ 177 (818)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..||..|+ +..|+|+.|.|.|
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 5789999999999999999999999999999999875 5999999999999999999887 4689999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 104 a~~ 106 (119)
T 2ad9_A 104 SNH 106 (119)
T ss_dssp CSS
T ss_pred ccC
Confidence 854
No 133
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=6.1e-13 Score=117.70 Aligned_cols=74 Identities=24% Similarity=0.435 Sum_probs=69.5
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++. +||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4589999999999999999999999999999999874 49999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 80 ~~ 81 (92)
T 2dgt_A 80 TS 81 (92)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 134
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=1.5e-14 Score=133.82 Aligned_cols=82 Identities=13% Similarity=0.220 Sum_probs=77.5
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 170 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~--------~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G 170 (818)
.+.++|||+|||+.+++++|+.+|+.||.|.. +.++.++.+|.++|||||+|.+.++|..||..|||..|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35789999999999999999999999999998 8899988889999999999999999999999999999999
Q ss_pred eEEEEEeehh
Q 003461 171 QELMLKVDQA 180 (818)
Q Consensus 171 r~L~V~~a~~ 180 (818)
+.|.|.++..
T Consensus 85 ~~l~V~~a~~ 94 (116)
T 2lcw_A 85 NPIKVSFATR 94 (116)
Confidence 9999998864
No 135
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.42 E-value=4.9e-13 Score=129.01 Aligned_cols=80 Identities=16% Similarity=0.320 Sum_probs=77.0
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
.++|||+|||+.+++++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 68999999999999999999999999999999999988999999999999999999999999999999999999998864
No 136
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=6.8e-13 Score=116.91 Aligned_cols=74 Identities=18% Similarity=0.325 Sum_probs=69.4
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++. +||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4588999999999999999999999999999999874 49999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 79 ~~ 80 (90)
T 2dnp_A 79 TK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 137
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.41 E-value=1.1e-12 Score=120.14 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=68.6
Q ss_pred CCccceeccCCCC-CCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~-vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
..++|||+|||+. +++++|+.+|..||.|..|.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4689999999999 999999999999999999988 4689999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 98 ~~ 99 (110)
T 1wf1_A 98 GE 99 (110)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 138
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=1.9e-13 Score=122.94 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=70.2
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
++|||+|||+.+++++|+.+|+.||.|..+.++.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 58999999999999999999999999999999876 779999999999999999999999999999999999865
No 139
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=4.6e-13 Score=120.14 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=70.9
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..+.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 35789999999999999999999999999999998754 589999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 87 ~~ 88 (99)
T 2cpj_A 87 CH 88 (99)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 140
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.40 E-value=6.6e-13 Score=129.31 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=76.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
..++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|+
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3789999999999999999999999999999999999889999999999999999999999999999999999999987
No 141
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.40 E-value=5e-13 Score=129.48 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=77.6
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 82 ~ 82 (168)
T 1b7f_A 82 P 82 (168)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.40 E-value=9.5e-13 Score=119.03 Aligned_cols=74 Identities=15% Similarity=0.404 Sum_probs=69.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.|..|.++. |||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 3578999999999999999999999999999998863 59999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 81 ~~ 82 (103)
T 2dgu_A 81 KP 82 (103)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 143
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.40 E-value=5.6e-13 Score=128.72 Aligned_cols=77 Identities=25% Similarity=0.399 Sum_probs=72.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||||||+.+++++|+.+|+.||.|.++.++.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35899999999999999999999999999999999775 5799999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 146 ~~ 147 (150)
T 2i2y_A 146 NG 147 (150)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=6.2e-13 Score=118.34 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=70.3
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~-ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
..++|||+|||+.+++++|+.+|..||.|..+ .++.++.+| .|||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 47899999999999999999999999999999 477775443 4999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 90 ~~ 91 (96)
T 2e44_A 90 PD 91 (96)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.39 E-value=3.2e-13 Score=124.40 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=70.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|+.+|+.||.|..|.++. ++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 478999999999999999999999999999998864 46899999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 146
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=6e-13 Score=121.67 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=68.2
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng--~~i~Gr~L~V~~ 177 (818)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..||..||+ ..|+|+.|.|.|
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 5789999999999999999999999999999988653 69999999999999999998865 459999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 88 a~~ 90 (104)
T 1wex_A 88 STS 90 (104)
T ss_dssp CSS
T ss_pred ccC
Confidence 864
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=4.8e-13 Score=119.53 Aligned_cols=74 Identities=18% Similarity=0.425 Sum_probs=69.1
Q ss_pred CCCccceeccCCC-CCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 99 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 99 ~~~~tLfVgNLp~-~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
.+.++|||+|||+ .+++++|+.+|+.||.|..+.+. +|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4589999999999 99999999999999999999884 58999999999999999999999999999999999
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 80 a~~ 82 (96)
T 2kvi_A 80 SSS 82 (96)
T ss_dssp EEC
T ss_pred cCc
Confidence 864
No 148
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.37 E-value=1.1e-12 Score=130.56 Aligned_cols=81 Identities=20% Similarity=0.360 Sum_probs=76.9
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
...++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..||.. ++..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecc
Confidence 4588999999999999999999999999999999999988999999999999999999999986 999999999999988
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 90 ~~ 91 (196)
T 1l3k_A 90 VS 91 (196)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=8.6e-13 Score=117.32 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=67.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|+.+|..||.|..| +.++.+|. ||||+|.+.++|..||. |||+.|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46899999999999999999999999999987 55555666 99999999999999999 99999999999998664
No 150
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1e-12 Score=116.33 Aligned_cols=75 Identities=15% Similarity=0.332 Sum_probs=67.4
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCc-eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMLK 176 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~-V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng-~~i~Gr~L~V~ 176 (818)
.+.++|||+|||+.+++++|+.+|..||. |..+.+. ++|||||+|.+.++|..||..||| +.|+|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 35789999999999999999999999999 5555552 368999999999999999999999 99999999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
++..
T Consensus 79 ~a~~ 82 (93)
T 2cqh_A 79 YSVS 82 (93)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9864
No 151
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=2.9e-12 Score=114.83 Aligned_cols=74 Identities=18% Similarity=0.388 Sum_probs=68.7
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhc--CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 176 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~--G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~ 176 (818)
.+.++|||+|||+.+++++|+.+|+.| |.|..+.++ +|||||+|.+.++|..||..|||..|+|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 358899999999999999999999999 999998774 4699999999999999999999999999999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
++..
T Consensus 85 ~a~~ 88 (99)
T 2cpd_A 85 LAKP 88 (99)
T ss_dssp CCCC
T ss_pred ECCC
Confidence 8864
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=8.5e-13 Score=122.35 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=68.8
Q ss_pred CCCccceeccCCCC-CCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEE
Q 003461 99 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELML 175 (818)
Q Consensus 99 ~~~~tLfVgNLp~~-vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln--g~~i~Gr~L~V 175 (818)
.+.++|||+|||+. +++++|+.+|..||.|.++.++. ++|||||+|.+.++|..||..|| +..|+|+.|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 35889999999998 99999999999999999999864 36999999999999999999885 56699999999
Q ss_pred Eeehh
Q 003461 176 KVDQA 180 (818)
Q Consensus 176 ~~a~~ 180 (818)
.++..
T Consensus 97 ~~a~~ 101 (112)
T 1x4f_A 97 DLSEK 101 (112)
T ss_dssp EEECS
T ss_pred EECcc
Confidence 99864
No 153
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.36 E-value=1.2e-12 Score=115.02 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=69.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|+.+|..| .|..+.+. +++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 47899999999999999999999999 99999884 578999999999999999999999999999999999875
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 154
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=6.2e-13 Score=125.27 Aligned_cols=79 Identities=23% Similarity=0.217 Sum_probs=73.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCce----eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTV----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V----~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
..++|||+|||+.+++++|+.+|+.||.| ..|.|+.+ .+|+++|||||+|.+.++|.+||.. |+..|+|+.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 57899999999999999999999999875 68999998 5999999999999999999999996 999999999999
Q ss_pred Eeehh
Q 003461 176 KVDQA 180 (818)
Q Consensus 176 ~~a~~ 180 (818)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87753
No 155
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=9.1e-13 Score=121.67 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=69.6
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~t---Gk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
...++|||||||+.+++++|+.+|+.||.|. +.++.+..+ |+++|||||+|.+.++|.+||..|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3579999999999999999999999999999 888887666 8999999999999999999999985 488988888
Q ss_pred Eeeh
Q 003461 176 KVDQ 179 (818)
Q Consensus 176 ~~a~ 179 (818)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 6543
No 156
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.36 E-value=1.9e-12 Score=132.07 Aligned_cols=80 Identities=18% Similarity=0.360 Sum_probs=75.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.+ .+.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d--~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc--CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 4678999999999999999999999999999999998 45689999999999999999999999999999999999997
Q ss_pred hh
Q 003461 180 AT 181 (818)
Q Consensus 180 ~~ 181 (818)
..
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.35 E-value=3.3e-12 Score=127.25 Aligned_cols=82 Identities=21% Similarity=0.443 Sum_probs=78.3
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35799999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 192 ~~ 193 (198)
T 2yh0_A 192 SV 193 (198)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 158
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.35 E-value=1.4e-12 Score=131.75 Aligned_cols=82 Identities=29% Similarity=0.497 Sum_probs=78.1
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
...++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 203 ~~ 204 (216)
T 2qfj_A 203 VT 204 (216)
T ss_dssp SS
T ss_pred cC
Confidence 64
No 159
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=3.6e-12 Score=113.92 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=67.6
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|| .+++++|+.+|..||.|..|.+. .++|||||+|.+.++|.+||..|||..|+|+.|.|.|+.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 5789999996 89999999999999999999883 567999999999999999999999999999999999886
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 86 ~ 86 (97)
T 1x5p_A 86 K 86 (97)
T ss_dssp S
T ss_pred C
Confidence 4
No 160
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.35 E-value=8e-13 Score=128.09 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=76.4
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+. +||..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999998899999999999999999999999 89999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 161
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.34 E-value=9.6e-13 Score=124.53 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=71.3
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCcee--EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~--~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
..++|||+|||+.+++++|+.+|+.| .|. .|.|+.++. |+++|||||+|.+.++|.+||.. ++..|+|+.|.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 47889999999999999999999999 566 899999965 99999999999999999999995 88999999999988
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 162
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.34 E-value=2.3e-12 Score=114.06 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=62.7
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMLK 176 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~--i~Gr~L~V~ 176 (818)
.+.++|||||||+.+++++|+.+|+.||.|.+|.++.+ ++|||||+|.+.++|.. |+|.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 35899999999999999999999999999999999774 78999999999999883 45554 569999999
Q ss_pred eehhh
Q 003461 177 VDQAT 181 (818)
Q Consensus 177 ~a~~~ 181 (818)
++...
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 98754
No 163
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.33 E-value=3.8e-13 Score=129.39 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=72.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|+++|..|| |..|.|+.++ +|+++|||||+|.+.++|.+|| .+|+..|+|+.|.|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 478999999999999999999999999 7799999996 5999999999999999999999 689999999999998775
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 122 ~ 122 (139)
T 2hgn_A 122 T 122 (139)
T ss_dssp C
T ss_pred C
Confidence 4
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.33 E-value=2.6e-12 Score=127.73 Aligned_cols=81 Identities=15% Similarity=0.343 Sum_probs=75.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999999988999999999999999999999986 8999999999999987
Q ss_pred hh
Q 003461 180 AT 181 (818)
Q Consensus 180 ~~ 181 (818)
..
T Consensus 182 ~k 183 (196)
T 1l3k_A 182 SK 183 (196)
T ss_dssp --
T ss_pred Ch
Confidence 64
No 165
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2.4e-12 Score=119.67 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=68.6
Q ss_pred CCCcccee--ccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee-----CCe
Q 003461 99 KPQTKVYV--GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-----DGQ 171 (818)
Q Consensus 99 ~~~~tLfV--gNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i-----~Gr 171 (818)
.+.++||| |||++.+++++|+.+|+.||.|..+.++.+ +|||||+|.+.++|..|+..|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 35788999 889999999999999999999999887542 68999999999999999999999998 799
Q ss_pred EEEEEeehh
Q 003461 172 ELMLKVDQA 180 (818)
Q Consensus 172 ~L~V~~a~~ 180 (818)
.|.|.++..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999998864
No 166
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.33 E-value=3.4e-12 Score=123.56 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=75.5
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G--r~L~V~~ 177 (818)
+.++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+| +.|.|.|
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 57899999999999999999999999999999999997799999999999999999999999999999988 9999988
Q ss_pred e
Q 003461 178 D 178 (818)
Q Consensus 178 a 178 (818)
|
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 5
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.9e-12 Score=123.47 Aligned_cols=78 Identities=19% Similarity=0.290 Sum_probs=73.1
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
++|||+|||+.+++++|..+|+.||.|.++.++.++ +|+++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 589999999999999999999999999999999985 788999999999999999999999999999999999998753
No 168
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.32 E-value=3.3e-12 Score=111.27 Aligned_cols=71 Identities=24% Similarity=0.418 Sum_probs=65.9
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhc----C-------ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 167 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~----G-------~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~ 167 (818)
.+.++|||+|||+.+++++|+.+|+.| | .|.++.+..+ +|||||+|.+.++|..|| .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 358899999999999999999999999 8 8999888654 699999999999999999 999999
Q ss_pred eCCeEEEEE
Q 003461 168 IDGQELMLK 176 (818)
Q Consensus 168 i~Gr~L~V~ 176 (818)
|+|+.|.|.
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999986
No 169
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.32 E-value=1.6e-12 Score=120.34 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=65.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE-----EE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE-----LM 174 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~-----L~ 174 (818)
..++|||+|||+.+++++|+.+|..||.|..|.|+.+ |||||+|.+.++|..||..|||..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4789999999999999999999999999999999765 89999999999999999999999999988 66
Q ss_pred EEeeh
Q 003461 175 LKVDQ 179 (818)
Q Consensus 175 V~~a~ 179 (818)
|..+.
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 65543
No 170
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.31 E-value=2.9e-12 Score=129.36 Aligned_cols=82 Identities=24% Similarity=0.336 Sum_probs=74.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred hh
Q 003461 180 AT 181 (818)
Q Consensus 180 ~~ 181 (818)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.31 E-value=4.5e-12 Score=122.24 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=74.2
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE--EEEEe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE--LMLKV 177 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~--L~V~~ 177 (818)
..++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|||..|+|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4788999999999999999999999999999999999889999999999999999999999999999999975 77776
Q ss_pred e
Q 003461 178 D 178 (818)
Q Consensus 178 a 178 (818)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 172
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.30 E-value=4.1e-12 Score=129.64 Aligned_cols=77 Identities=22% Similarity=0.235 Sum_probs=71.4
Q ss_pred CCCccceeccCC-CCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 99 KPQTKVYVGKIA-PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 99 ~~~~tLfVgNLp-~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
.+.++|||+||| +.+++++|+.+|+.||.|.+|+++.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 358899999999 89999999999999999999999765 369999999999999999999999999999999998
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 77 s~~ 79 (205)
T 3tyt_A 77 SKQ 79 (205)
T ss_dssp CSC
T ss_pred ccC
Confidence 853
No 173
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=2.9e-12 Score=114.51 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=63.4
Q ss_pred Ccc-ceeccCCCCCCHHH----HHHHHhhc-CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003461 101 QTK-VYVGKIAPTADSDF----VLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 174 (818)
Q Consensus 101 ~~t-LfVgNLp~~vte~~----L~~lF~~~-G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~ 174 (818)
..| |||+|||+.++.+. |+++|+.| |.|..+ +| |||||.|.+.++|.+|+..|||..|.|+.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 455 99999999999987 66899999 599987 34 9999999999999999999999999999999
Q ss_pred EEeehh
Q 003461 175 LKVDQA 180 (818)
Q Consensus 175 V~~a~~ 180 (818)
|.++..
T Consensus 78 v~~A~~ 83 (96)
T 2diu_A 78 VSFTPK 83 (96)
T ss_dssp EESSCC
T ss_pred EEecCC
Confidence 999864
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.30 E-value=3.7e-12 Score=123.94 Aligned_cols=79 Identities=14% Similarity=0.344 Sum_probs=73.9
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 176 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~---Gr~L~V~ 176 (818)
..++|||+|||+.+++++|+.+|+.||.|..+.++.+. +|.++|||||+|.+.++|.+||..|||..+. |+.|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 57899999999999999999999999999999999984 7999999999999999999999999998776 4999999
Q ss_pred eeh
Q 003461 177 VDQ 179 (818)
Q Consensus 177 ~a~ 179 (818)
|++
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 175
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.29 E-value=1.2e-11 Score=113.27 Aligned_cols=82 Identities=17% Similarity=0.083 Sum_probs=72.8
Q ss_pred CCCccceeccCCC-----CCCHHHHHHHHhhcCceeEEEEeecCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 003461 99 KPQTKVYVGKIAP-----TADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 172 (818)
Q Consensus 99 ~~~~tLfVgNLp~-----~vte~~L~~lF~~~G~V~~~ki~~d~~-tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~ 172 (818)
.++++|+|.||.. .-++++|+.+|++||.|.++.|+.++. +|.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3588999999973 235789999999999999999998864 4789999999999999999999999999999999
Q ss_pred EEEEeehh
Q 003461 173 LMLKVDQA 180 (818)
Q Consensus 173 L~V~~a~~ 180 (818)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999875
No 176
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.28 E-value=4.9e-12 Score=122.52 Aligned_cols=79 Identities=24% Similarity=0.408 Sum_probs=74.3
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 47899999999999999999999999999999999998899999999999999999999998 4679999999999876
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 80 ~ 80 (167)
T 2cjk_A 80 P 80 (167)
T ss_dssp C
T ss_pred c
Confidence 5
No 177
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.26 E-value=1.3e-11 Score=117.17 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLK 176 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGf-gFVeF~s~esA~~Al~~Lng~~i~G--r~L~V~ 176 (818)
....|||+||++.+++++|+.+|+.||.|.++.++.. .+|| |||+|.+.++|..|+..|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3567899999999999999999999999999988764 2588 9999999999999999999999988 899999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
|+..
T Consensus 102 ~ak~ 105 (130)
T 3zzy_A 102 FSKL 105 (130)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 8864
No 178
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.26 E-value=9.6e-12 Score=122.53 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=69.2
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEee
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKVD 178 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G--r~L~V~~a 178 (818)
..+|||+||++.+++++|+.+|+.||.|.++.+... .++|||||+|.+.++|..|+..|||..|.| +.|+|.|+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 568999999999999999999999999999998653 357899999999999999999999999965 99999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 122 k~ 123 (164)
T 1sjr_A 122 KL 123 (164)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 179
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.26 E-value=1.3e-11 Score=130.61 Aligned_cols=82 Identities=13% Similarity=0.301 Sum_probs=75.0
Q ss_pred CCCCccceeccCCCCCCHHHHH----HHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003461 98 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 173 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~vte~~L~----~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L 173 (818)
..+.++|||+|||+.+++++|+ .+|..||.|..|.++. +|+++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 3468999999999999999966 8999999999998875 78999999999999999999999999999999999
Q ss_pred EEEeehhhH
Q 003461 174 MLKVDQATR 182 (818)
Q Consensus 174 ~V~~a~~~k 182 (818)
.|.|+....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999986543
No 180
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.26 E-value=1e-11 Score=125.56 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=72.6
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.++.++|+.+|+.||.|..+.++.+. +|.++|||||+|.+.++|..||..+ +..|+|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 46899999999999999999999999999999999984 7999999999999999999999865 469999999999864
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 3
No 181
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.25 E-value=9.5e-12 Score=121.04 Aligned_cols=80 Identities=19% Similarity=0.274 Sum_probs=72.9
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCC--CCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 174 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tG--k~kGfgFVeF~s~esA~~Al~~Lng~~i~---Gr~L~ 174 (818)
..++|||+|||+.+++++|+.+|+.||.|.++.++.++.+| .++|||||+|.+.++|..|+..|||..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 47899999999999999999999999999999999997776 89999999999999999999999998876 67777
Q ss_pred EEeeh
Q 003461 175 LKVDQ 179 (818)
Q Consensus 175 V~~a~ 179 (818)
|.++.
T Consensus 82 ~~~~~ 86 (175)
T 3nmr_A 82 MKPAD 86 (175)
T ss_dssp EEECG
T ss_pred Ecccc
Confidence 77664
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.25 E-value=1.3e-11 Score=120.75 Aligned_cols=77 Identities=17% Similarity=0.260 Sum_probs=71.4
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 171 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 171 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEEC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEec
Confidence 357899999999999999999999999988766 368999999999999999999999999999999999999998
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 172 ~~ 173 (175)
T 1fje_B 172 GE 173 (175)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.25 E-value=9.4e-12 Score=116.59 Aligned_cols=73 Identities=15% Similarity=0.276 Sum_probs=67.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||||+ .+++++|+.+|+.||.|..|.+. .++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 5789999996 69999999999999999999885 567999999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 110 ~ 110 (121)
T 2bz2_A 110 K 110 (121)
T ss_dssp S
T ss_pred C
Confidence 5
No 184
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=6.6e-12 Score=110.05 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=63.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ ++|||||+|.+.++|.+|+. .++.++|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 5799999999999999999999999999999998764 67999999999999975432 2355689999999875
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 77 ~ 77 (88)
T 1wf0_A 77 P 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 185
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.22 E-value=2.9e-11 Score=114.04 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=66.2
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEe
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 177 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGf-gFVeF~s~esA~~Al~~Lng~~i~G--r~L~V~~ 177 (818)
...|||+||++.++++.|+.+|+.||.|..+.++.. .|| |||+|.+.++|..|+..|||..|.| +.|.|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999998652 286 9999999999999999999999987 6899998
Q ss_pred ehh
Q 003461 178 DQA 180 (818)
Q Consensus 178 a~~ 180 (818)
+..
T Consensus 99 Ak~ 101 (124)
T 2e5i_A 99 ARP 101 (124)
T ss_dssp CSC
T ss_pred ecC
Confidence 854
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.21 E-value=2.1e-11 Score=129.64 Aligned_cols=82 Identities=12% Similarity=0.235 Sum_probs=75.2
Q ss_pred CCCCccceeccCCCC-CCHHHHHHHHhhcCceeEEEEeecCC-CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 003461 98 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPS-NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 175 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~-vte~~L~~lF~~~G~V~~~ki~~d~~-tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V 175 (818)
..+.++|||+|||+. +++++|+.+|+.||.|..+.++.+.. ||.++|||||+|.+.++|.+|| .|||..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345789999999999 99999999999999999999999864 5999999999999999999999 99999999999999
Q ss_pred Eeehh
Q 003461 176 KVDQA 180 (818)
Q Consensus 176 ~~a~~ 180 (818)
.|+..
T Consensus 286 ~~a~~ 290 (292)
T 2ghp_A 286 SLADK 290 (292)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99865
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.20 E-value=3.7e-11 Score=127.14 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=77.5
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
..++|||+|||+.+++++|..+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 174 ~ 174 (284)
T 3smz_A 174 A 174 (284)
T ss_dssp G
T ss_pred C
Confidence 4
No 188
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.20 E-value=2.2e-11 Score=125.65 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=71.6
Q ss_pred CCccceeccCCC-CCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~-~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
+.++|||+|||+ .+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a 107 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 107 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 589999999999 99999999999999999999998873 789999999999999999999999999999999988
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 108 ~~ 109 (229)
T 2adc_A 108 KH 109 (229)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.18 E-value=4.4e-11 Score=126.57 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=77.3
Q ss_pred CCCccceeccCCCCC-CHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEe
Q 003461 99 KPQTKVYVGKIAPTA-DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 177 (818)
Q Consensus 99 ~~~~tLfVgNLp~~v-te~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~ 177 (818)
.+.++|||+|||+.+ ++++|+.+|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.|
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 457899999999995 899999999999999999999985 899999999999999999999999999999999999999
Q ss_pred ehhh
Q 003461 178 DQAT 181 (818)
Q Consensus 178 a~~~ 181 (818)
+...
T Consensus 261 a~~~ 264 (284)
T 3smz_A 261 CAPG 264 (284)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 9764
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.17 E-value=1.1e-11 Score=121.19 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=71.6
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|..||.+.. .++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 46899999999999999999999999998876 334444689999999999999999999995 9999999999999988
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 89 ~~ 90 (175)
T 1fje_B 89 KG 90 (175)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 191
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.17 E-value=3.4e-11 Score=122.82 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=69.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCce--eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe----EE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTV--KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ----EL 173 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V--~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr----~L 173 (818)
+.++|||+|||+.+++++|+.+|+.||.| .+++++.+. |..+|||||+|.+.++|..||..|||+.|+|. ++
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 57899999999999999999999999999 899988773 66779999999999999999999999999987 57
Q ss_pred EEEee
Q 003461 174 MLKVD 178 (818)
Q Consensus 174 ~V~~a 178 (818)
.|+|+
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 77765
No 192
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.13 E-value=1.4e-10 Score=106.03 Aligned_cols=82 Identities=17% Similarity=0.085 Sum_probs=70.4
Q ss_pred CCCccceeccCC--CCCC--------HHHHHHHHhhcCceeEEEEeecCCC--CCCccEEEEEeCCHHHHHHHHHHhCCc
Q 003461 99 KPQTKVYVGKIA--PTAD--------SDFVLSVLKVCGTVKSWKRAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKF 166 (818)
Q Consensus 99 ~~~~tLfVgNLp--~~vt--------e~~L~~lF~~~G~V~~~ki~~d~~t--Gk~kGfgFVeF~s~esA~~Al~~Lng~ 166 (818)
.|++.|++.|+- ..+. .++|+..|++||.|.++.|+.++.+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 357788999983 2332 2589999999999999999988644 468999999999999999999999999
Q ss_pred eeCCeEEEEEeehh
Q 003461 167 NIDGQELMLKVDQA 180 (818)
Q Consensus 167 ~i~Gr~L~V~~a~~ 180 (818)
.++|+.|.|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999865
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.13 E-value=4.3e-11 Score=124.99 Aligned_cols=78 Identities=19% Similarity=0.291 Sum_probs=70.8
Q ss_pred CCCCccceeccCCCCC---------CHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 003461 98 EKPQTKVYVGKIAPTA---------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 168 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~v---------te~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i 168 (818)
....++||||||+..+ +++.|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..|+..|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4468999999999998 79999999999999999999864 69999999999999999999999999
Q ss_pred ------------CCeEEEEEeehhh
Q 003461 169 ------------DGQELMLKVDQAT 181 (818)
Q Consensus 169 ------------~Gr~L~V~~a~~~ 181 (818)
+|+.|.|.|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999653
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.1e-10 Score=107.30 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=67.6
Q ss_pred CCccceeccCCCCCC-----------HHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 003461 100 PQTKVYVGKIAPTAD-----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 168 (818)
Q Consensus 100 ~~~tLfVgNLp~~vt-----------e~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i 168 (818)
+.++|+|.||..... +++|+.+|++||.|..|.| .+. .++|||||+|.+.++|.+||..|||..|
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 588999999954432 4799999999999999955 442 3799999999999999999999999999
Q ss_pred CCeEEEEEeehhh
Q 003461 169 DGQELMLKVDQAT 181 (818)
Q Consensus 169 ~Gr~L~V~~a~~~ 181 (818)
+|+.|.|.++...
T Consensus 90 ~gr~l~v~~a~~~ 102 (112)
T 2dit_A 90 GGRQITAQAWDGT 102 (112)
T ss_dssp TTEECEEEECCSC
T ss_pred CCcEEEEEEeCCC
Confidence 9999999998653
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.12 E-value=1.5e-10 Score=121.76 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=70.4
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+.++|||+|||+.+++++|+.+|+.||.|..|.+..+ +|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 35789999999999999999999999999999988543 699999999999999999999999999999999987
Q ss_pred hh
Q 003461 179 QA 180 (818)
Q Consensus 179 ~~ 180 (818)
..
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.12 E-value=4.8e-11 Score=119.37 Aligned_cols=75 Identities=15% Similarity=0.256 Sum_probs=70.8
Q ss_pred CccceeccCCC-CCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeeh
Q 003461 101 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 179 (818)
Q Consensus 101 ~~tLfVgNLp~-~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~ 179 (818)
.++|||+|||+ .+++++|+.+|+.||.|..|.++.++ +|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999998863 7899999999999999999999999999999999986
Q ss_pred h
Q 003461 180 A 180 (818)
Q Consensus 180 ~ 180 (818)
.
T Consensus 78 ~ 78 (198)
T 1qm9_A 78 H 78 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 197
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.10 E-value=5.2e-11 Score=108.67 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=65.0
Q ss_pred eccCCCCCCHHHHHHHH------------hhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 003461 106 VGKIAPTADSDFVLSVL------------KVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 173 (818)
Q Consensus 106 VgNLp~~vte~~L~~lF------------~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L 173 (818)
+.||++.+++.+|+..| ++||.|.++.++.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67788888888777766 999999999999884 68999999999999999999999999999999999
Q ss_pred EEEee
Q 003461 174 MLKVD 178 (818)
Q Consensus 174 ~V~~a 178 (818)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.09 E-value=1.4e-10 Score=123.27 Aligned_cols=81 Identities=17% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G-~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
..++|||+|||+.+++.+|..+|..|| .|..+.++.+. .|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 588999999999999999999999999 99999999885 5899999999999999999999999999999999999998
Q ss_pred hhh
Q 003461 179 QAT 181 (818)
Q Consensus 179 ~~~ 181 (818)
...
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.09 E-value=2.4e-11 Score=120.95 Aligned_cols=74 Identities=20% Similarity=0.340 Sum_probs=64.5
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcC-----------ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCG-----------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 168 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G-----------~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i 168 (818)
..++|||+|||+.+++++|..+|+.|| .|..+.+ +.++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 478999999999999999999999995 4444433 566899999999999999999 7999999
Q ss_pred CCeEEEEEeehh
Q 003461 169 DGQELMLKVDQA 180 (818)
Q Consensus 169 ~Gr~L~V~~a~~ 180 (818)
+|+.|.|.++..
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999987754
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.08 E-value=2.2e-10 Score=114.57 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=71.1
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 176 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G-~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~-Gr~L~V~ 176 (818)
.+.++|||+|||..+++++|+.+|+.|| .|..+.++.+ .+|||||+|.+.++|.+|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3589999999999999999999999999 9999998664 2689999999999999999999999999 9999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
|+..
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9864
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.07 E-value=2.1e-10 Score=120.67 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=73.3
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeC---CeEEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNID---GQELML 175 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~L-ng~~i~---Gr~L~V 175 (818)
+.++|||+|||+.+++++|+.+|+.||.|..+.++.+ .+|.++|||||+|.+.++|.+||..| +|..+. |+.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 5789999999999999999999999999999999999 59999999999999999999999999 455555 999999
Q ss_pred Eeehh
Q 003461 176 KVDQA 180 (818)
Q Consensus 176 ~~a~~ 180 (818)
.++..
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98763
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.04 E-value=4e-10 Score=105.31 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=70.7
Q ss_pred CCccceeccCCCC--C---CHHHHHHHHhhcCceeEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 003461 100 PQTKVYVGKIAPT--A---DSDFVLSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 170 (818)
Q Consensus 100 ~~~tLfVgNLp~~--v---te~~L~~lF~~~G~V~~~ki~~d~~----tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G 170 (818)
++++|++.|+-.. + -+++|+..|++||.|.++.|+.++. ++.++||+||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5889999998432 2 2469999999999999999998853 45778999999999999999999999999999
Q ss_pred eEEEEEeehh
Q 003461 171 QELMLKVDQA 180 (818)
Q Consensus 171 r~L~V~~a~~ 180 (818)
+.|.|.+...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 203
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.03 E-value=3.4e-10 Score=116.65 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=70.9
Q ss_pred CCCccceeccCCCCCCHHHHHHHHhhcC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 003461 99 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 176 (818)
Q Consensus 99 ~~~~tLfVgNLp~~vte~~L~~lF~~~G-~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~-Gr~L~V~ 176 (818)
.+.++|||+|||+.+++++|+.+|+.|| .|..+.++.. .+|||||+|.+.++|.+||..|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3579999999999999999999999999 9999998653 3689999999999999999999999999 9999999
Q ss_pred eehh
Q 003461 177 VDQA 180 (818)
Q Consensus 177 ~a~~ 180 (818)
|+..
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9864
No 204
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.01 E-value=5.2e-10 Score=108.67 Aligned_cols=73 Identities=22% Similarity=0.405 Sum_probs=64.7
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhc----C-------ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 168 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~----G-------~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i 168 (818)
+.++|||+|||+.+++++|+.+|+.| | .|..+.+ +.++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 47899999999999999999999999 6 5566554 345799999999999999999 7999999
Q ss_pred CCeEEEEEeeh
Q 003461 169 DGQELMLKVDQ 179 (818)
Q Consensus 169 ~Gr~L~V~~a~ 179 (818)
+|+.|.|.++.
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999998754
No 205
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.92 E-value=1.8e-09 Score=118.43 Aligned_cols=76 Identities=24% Similarity=0.361 Sum_probs=65.5
Q ss_pred CCCCccceecc--CCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---Ce-
Q 003461 98 EKPQTKVYVGK--IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQ- 171 (818)
Q Consensus 98 ~~~~~tLfVgN--Lp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~---Gr- 171 (818)
..+..+||||| |++.+++++|+++|+.||.|.++.+.. ++|||||+|.+.++|.+||..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 44688999999 689999999999999999999887643 4699999999999999999999999883 44
Q ss_pred -EEEEEeeh
Q 003461 172 -ELMLKVDQ 179 (818)
Q Consensus 172 -~L~V~~a~ 179 (818)
.|.|.+..
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67888764
No 206
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.5e-08 Score=91.85 Aligned_cols=63 Identities=16% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 111 PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 111 ~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
..+++++|+.+|+.||.|..|.|+ ++++|||||+|.+.++|..||..+++ +.|+.|.|.|+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 468999999999999999999986 47889999999999999999997655 6799999998754
No 207
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.78 E-value=2.1e-08 Score=93.08 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=66.4
Q ss_pred CCccceeccCCCCCC----------HHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003461 100 PQTKVYVGKIAPTAD----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 169 (818)
Q Consensus 100 ~~~tLfVgNLp~~vt----------e~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~ 169 (818)
+++.|.+.|+-..-. .++|+..|++||.|.++.+..+. ++|||||+|.+.++|.+|+..|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 356677777643221 23789999999999999886652 5899999999999999999999999999
Q ss_pred CeEEEEEeehhhHHHHHH
Q 003461 170 GQELMLKVDQATREYLER 187 (818)
Q Consensus 170 Gr~L~V~~a~~~kk~le~ 187 (818)
|+.|.|.+... ..|...
T Consensus 82 GR~i~v~~~~~-~~y~~~ 98 (114)
T 3s6e_A 82 GKMITAAYVPL-PTYHNL 98 (114)
T ss_dssp TEECEEEEECH-HHHHHH
T ss_pred CEEEEEEEEcH-HHHHHh
Confidence 99999999864 344433
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=4.7e-08 Score=86.64 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=62.2
Q ss_pred CCCCccceeccCCC----CC-CH---HHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003461 98 EKPQTKVYVGKIAP----TA-DS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 169 (818)
Q Consensus 98 ~~~~~tLfVgNLp~----~v-te---~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~ 169 (818)
++|..||+|...+. .. .+ ..|.+.|..||.|..++++.+ .+||+|.+.++|.+||. |||+.|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeC
Confidence 34678999988762 33 32 478899999999999999887 48999999999999999 9999999
Q ss_pred CeEEEEEeeh
Q 003461 170 GQELMLKVDQ 179 (818)
Q Consensus 170 Gr~L~V~~a~ 179 (818)
|+.|+|.++.
T Consensus 75 Gr~LkV~lkt 84 (91)
T 2dnr_A 75 NRTITIALKS 84 (91)
T ss_dssp TEEEEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999999764
No 209
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=9.3e-08 Score=89.54 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=73.9
Q ss_pred CCCccceeccCCCC-CCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCC-HHHHHHHHHHhC--CceeCCeEEE
Q 003461 99 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALRLLN--KFNIDGQELM 174 (818)
Q Consensus 99 ~~~~tLfVgNLp~~-vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s-~esA~~Al~~Ln--g~~i~Gr~L~ 174 (818)
.+++.|||+||++. ++.++|+.+|+.||.|..|.++.+. .+|||.|.+ +.+|..|+..|| |+.|.|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~------~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA------KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC------SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC------CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 46899999999999 9999999999999999999998875 269999999 899999999994 8899998888
Q ss_pred EEeeh--hhHHHHHHHHH
Q 003461 175 LKVDQ--ATREYLERYVD 190 (818)
Q Consensus 175 V~~a~--~~kk~le~~k~ 190 (818)
|.+.. .-+.|+....+
T Consensus 90 ~evL~GeeE~~yw~Ki~e 107 (121)
T 1owx_A 90 WEVLEGEVEKEALKKIIE 107 (121)
T ss_dssp EEECCHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHH
Confidence 87653 44667766654
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=3.5e-07 Score=81.46 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=61.4
Q ss_pred CCCCccceeccCCCC------CCH---HHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 003461 98 EKPQTKVYVGKIAPT------ADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 168 (818)
Q Consensus 98 ~~~~~tLfVgNLp~~------vte---~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i 168 (818)
++|..||+|..++.. ..+ ..|.+.|..||.|..++++.+. +||+|.+.++|.+||. |||+.|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 446889999988743 343 3688999999999999998882 9999999999999999 999999
Q ss_pred CCeEEEEEe
Q 003461 169 DGQELMLKV 177 (818)
Q Consensus 169 ~Gr~L~V~~ 177 (818)
+|+.|+|.+
T Consensus 83 ~Gr~L~V~~ 91 (95)
T 1ufw_A 83 KGRAVKISG 91 (95)
T ss_dssp TTEEEEEEC
T ss_pred CCeEEEEec
Confidence 999999975
No 211
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.30 E-value=9.7e-07 Score=90.25 Aligned_cols=68 Identities=19% Similarity=0.073 Sum_probs=60.8
Q ss_pred CCHHHHHHHHhhcCceeEEEEeecC----CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEeehh
Q 003461 113 ADSDFVLSVLKVCGTVKSWKRAQYP----SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 180 (818)
Q Consensus 113 vte~~L~~lF~~~G~V~~~ki~~d~----~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a~~ 180 (818)
-.+++|...|++||.|.++.++.+. .+|.++||+||+|.+.++|.+|+..|||..++|+.|.|.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3456899999999999999998553 4558999999999999999999999999999999999999864
No 212
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.0002 Score=65.26 Aligned_cols=73 Identities=10% Similarity=0.052 Sum_probs=67.2
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhc-----CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVC-----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 174 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~-----G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~ 174 (818)
..++|-+-|||.++++..|+.|+..+ |.+..+.++.+. +-|+|+|.+...|.+|.-.|+|.+|+|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47889999999999999999999999 999999998874 6799999999999999988999999999999
Q ss_pred EEee
Q 003461 175 LKVD 178 (818)
Q Consensus 175 V~~a 178 (818)
|.--
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 9743
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.60 E-value=0.0034 Score=56.84 Aligned_cols=75 Identities=12% Similarity=0.023 Sum_probs=63.5
Q ss_pred CCccceeccCCCCC-CH----HHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003461 100 PQTKVYVGKIAPTA-DS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 174 (818)
Q Consensus 100 ~~~tLfVgNLp~~v-te----~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~ 174 (818)
.+++|+|.||+..| .. ..++.+|..|+.+.+|.....- .=..|.|.++++|.+|-..||+..++|+.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 47889999998754 22 4779999999999998876541 2468999999999999999999999999999
Q ss_pred EEeehh
Q 003461 175 LKVDQA 180 (818)
Q Consensus 175 V~~a~~ 180 (818)
|-+++.
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999874
No 214
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.03 E-value=0.064 Score=47.45 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=56.8
Q ss_pred ccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCC--ccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003461 102 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTP--KGFGFCEFESAEGVLRALRLLNKFNID 169 (818)
Q Consensus 102 ~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~--kGfgFVeF~s~esA~~Al~~Lng~~i~ 169 (818)
++|.|.+||+++|++.+.+.++..+.+..+..+.+..+.+. -+-|+|.|.+.+++..-...++|+.+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57899999999999999999999988877777666544332 356899999999999999999998773
No 215
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.16 E-value=0.14 Score=45.77 Aligned_cols=53 Identities=11% Similarity=0.084 Sum_probs=45.1
Q ss_pred cceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 003461 103 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 163 (818)
Q Consensus 103 tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~L 163 (818)
.||+-+.|..+.-.+|.++|+.||.| .|.++.| .-|||.|.+++.|..|+..+
T Consensus 17 HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred eEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 34444999999999999999999944 5667777 48999999999999999876
No 216
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.81 E-value=0.18 Score=45.50 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=56.8
Q ss_pred CCccceeccCCCCCCHHHHHHHHhh----c-CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKV----C-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 174 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~----~-G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~ 174 (818)
-..+|.|.|||+.+.++.|.-+|.+ . |.|..|.... +-|+|+|.+...|.+.|.. ..+.|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4789999999999999999999986 2 4777776532 4789999999999999874 47888888888
Q ss_pred EEe
Q 003461 175 LKV 177 (818)
Q Consensus 175 V~~ 177 (818)
|.-
T Consensus 78 V~P 80 (104)
T 2dhx_A 78 LRP 80 (104)
T ss_dssp EEE
T ss_pred EEc
Confidence 853
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=92.43 E-value=0.35 Score=44.80 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=56.1
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEee
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMLKVD 178 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~G-r~L~V~~a 178 (818)
..+-|.|-+.|+.. -..+...|..||.|...... + ...+-.|.|.+..+|.+||.. ||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence 36677788888775 45777889999999987752 1 236999999999999999995 9999985 66777654
No 218
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=92.42 E-value=0.12 Score=46.39 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=45.4
Q ss_pred ceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 003461 104 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 164 (818)
Q Consensus 104 LfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln 164 (818)
||+-+.|..+.-.+|..+|+.||. ..|.++.| .-|||.|.+++.|..|+..++
T Consensus 8 V~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEECCTTCCHHHHHHHTTTSEE-EEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEEeCChhhhhHHHHHHHhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 444499999999999999999994 46777777 489999999999999998764
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=91.39 E-value=0.29 Score=45.98 Aligned_cols=88 Identities=16% Similarity=0.157 Sum_probs=56.5
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEE-EEeec--------CCCC-----CCccEEEEEeCCHHHHHHHHHHhCCc
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQY--------PSNG-----TPKGFGFCEFESAEGVLRALRLLNKF 166 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~-ki~~d--------~~tG-----k~kGfgFVeF~s~esA~~Al~~Lng~ 166 (818)
...|.|-+.|+... ..+...|++||.|..- .+... +.+. ...++-.|+|.++.+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 44566667766554 4666789999998762 11110 0000 1246789999999999999995 999
Q ss_pred eeCCeEEEEEeehhhHHHHHHHHHhh
Q 003461 167 NIDGQELMLKVDQATREYLERYVDKK 192 (818)
Q Consensus 167 ~i~Gr~L~V~~a~~~kk~le~~k~kk 192 (818)
.|+|..|-|... .+..+++...++
T Consensus 85 ii~G~mIGV~Py--~~~~ve~l~~~~ 108 (132)
T 3p3d_A 85 VFNGVLLGVIPY--TKDAVERLQKRK 108 (132)
T ss_dssp EETTEECEEEEC--CHHHHHHHC---
T ss_pred EeCcEEEEEEEC--CHHHHHHHhcCC
Confidence 999987777665 345555554443
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=91.34 E-value=0.15 Score=48.46 Aligned_cols=36 Identities=19% Similarity=0.070 Sum_probs=29.9
Q ss_pred EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 003461 130 SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 167 (818)
Q Consensus 130 ~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~ 167 (818)
+++++.+ ...++|||||+|.+.++|.+|+..+++..
T Consensus 2 ~~kl~ln--~~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEE--CSSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEec--CccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 5677776 34789999999999999999998887643
No 221
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=90.36 E-value=0.14 Score=48.40 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=38.9
Q ss_pred EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEeeh
Q 003461 131 WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVDQ 179 (818)
Q Consensus 131 ~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~L-ng~~i~Gr~L~V~~a~ 179 (818)
+.+..+ ..+.+|+++|+|.+++.|.+|+..| ||..|+| .+.|.++.
T Consensus 3 ~al~l~--g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~ 49 (150)
T 2i2y_A 3 YKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDAT 49 (150)
T ss_dssp EEEEEC--CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTT
T ss_pred eEeeec--cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceeccccc
Confidence 344443 5678999999999999999999999 9999999 88888654
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=87.03 E-value=0.64 Score=41.50 Aligned_cols=69 Identities=9% Similarity=0.096 Sum_probs=50.7
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCC--ccEEEEEeCCHHHHHHHHHHhCCceeC
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTP--KGFGFCEFESAEGVLRALRLLNKFNID 169 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~--kGfgFVeF~s~esA~~Al~~Lng~~i~ 169 (818)
+-+|.|..||+++|++.+.+.++..-.+.....+.+..+-+. -+-|+|.|.+.+++..-...++|+.+-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 568999999999999998888876655432233333222222 256899999999999999999998763
No 223
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=80.94 E-value=0.84 Score=51.68 Aligned_cols=65 Identities=14% Similarity=0.087 Sum_probs=46.1
Q ss_pred CCccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 003461 100 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 171 (818)
Q Consensus 100 ~~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr 171 (818)
..+.|||. .|..+++.+|...|+.||.|.++.+..+ .| .|+.|+|.+.+++..++.. .++.+.+.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~g---~~~~vef~~~~~~~~~~~~-~~~p~~~~ 116 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--FG---LYAVVEFCQKESIGSLQNG-THTPXXXX 116 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--SS---EEEEEECC---CCHHHHSS-CCCCCCBC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--CC---eEEEEEeCCHHHHHHHHhc-cCCCcccc
Confidence 36789997 7999999999999999999999887654 23 7999999999999877653 34444433
No 224
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=61.46 E-value=2.9 Score=31.50 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 003461 774 KASQMLELLQTILDDEAEMFVLKM 797 (818)
Q Consensus 774 ~~~~l~~~l~~~lde~a~~fv~~l 797 (818)
+-..||+++..+|+.+|+.||...
T Consensus 15 ~~D~lLDeId~vLE~NAeeFV~~f 38 (44)
T 3m91_B 15 ETDDLLDEIDDVLEENAEDFVRAY 38 (44)
T ss_dssp HHHHHHHHHHHHHHHTC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345899999999999999999753
No 225
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=58.73 E-value=18 Score=41.38 Aligned_cols=55 Identities=11% Similarity=0.098 Sum_probs=45.0
Q ss_pred CccceeccCCCCCCHHHHHHHHhhcCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 003461 101 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 164 (818)
Q Consensus 101 ~~tLfVgNLp~~vte~~L~~lF~~~G~V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Ln 164 (818)
+..++|+ +|..+...+|.++|+.||.| .+.++.+ ..+||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 3455555 88888999999999999954 6666665 489999999999999999884
No 226
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=54.88 E-value=31 Score=30.41 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=47.4
Q ss_pred HhhhhhhhHHHHHHhhhCCchh--HHHHHHHHhhhccCCHHHHHHHHHHhhhHH-HH---HHHHHHH
Q 003461 738 LHERMRPWISKKITEFLGEEET--TLVDYIVSSTQDHVKASQMLELLQTILDDE-AE---MFVLKMW 798 (818)
Q Consensus 738 ~~~~~~pwi~kki~e~lG~ee~--~lv~~i~~~l~~~~~~~~l~~~l~~~lde~-a~---~fv~~lW 798 (818)
+-+.||--|.+|...+=-+-|+ .+-+||+=++....++..++.+|...+|.= .+ .||.-.+
T Consensus 6 i~~nLK~ivaekL~~~~NF~EDv~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt~F 72 (104)
T 2v75_A 6 YTENLKVIVAEKLAGIPNFNEDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQTAF 72 (104)
T ss_dssp CHHHHHHHHHHHHTTSTTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccCccccHHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 3456788899998888555444 488999999999999999999999999943 33 5665544
No 227
>3qks_C DNA double-strand break repair protein MRE11; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_C* 3qku_C*
Probab=36.04 E-value=17 Score=25.75 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=16.3
Q ss_pred HHHHHHhhhCCchhHHHHHHHHhhh
Q 003461 746 ISKKITEFLGEEETTLVDYIVSSTQ 770 (818)
Q Consensus 746 i~kki~e~lG~ee~~lv~~i~~~l~ 770 (818)
+..||+++||+.+=.=+|+|++.+.
T Consensus 7 ~ElKiI~l~Gek~~e~~d~vi~l~~ 31 (34)
T 3qks_C 7 FELKIIDILGEKDFDDFDYIIKLIT 31 (34)
T ss_dssp HHHHHHHHC------CHHHHHHHTT
T ss_pred HHHHHHHHHccchHHHHHHHHHHHH
Confidence 4689999999988888899998875
No 228
>3m9d_G Prokaryotic ubiquitin-like protein PUP; alpha helix coil COIL, 5 beta-strand barrel, ATP-binding, CH nucleotide-binding, proteasome; 4.50A {Mycobacterium tuberculosis}
Probab=31.22 E-value=7.4 Score=31.97 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHhhhHHHHHHHHHH
Q 003461 774 KASQMLELLQTILDDEAEMFVLKM 797 (818)
Q Consensus 774 ~~~~l~~~l~~~lde~a~~fv~~l 797 (818)
+-..||++|..||+.+|+.||...
T Consensus 39 ~~D~lLDeId~vLe~NAeefV~~f 62 (68)
T 3m9d_G 39 ETDDLLDEIDDVLEENAEDFVRAY 62 (68)
T ss_dssp TTTTHHHHHTTTSSSCC-------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445899999999999999999753
No 229
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=21.28 E-value=1.2e+02 Score=24.69 Aligned_cols=58 Identities=7% Similarity=0.109 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHhhcCc-----eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEee
Q 003461 112 TADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 178 (818)
Q Consensus 112 ~vte~~L~~lF~~~G~-----V~~~ki~~d~~tGk~kGfgFVeF~s~esA~~Al~~Lng~~i~Gr~L~V~~a 178 (818)
.+...+|..++..-|. |-.+.+.. .|.||+-... .+..++..|++..+.|+.+.|..+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 4555677777765543 34445533 3888887654 466788889999999999988765
Done!