Query 003462
Match_columns 818
No_of_seqs 345 out of 1476
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 23:52:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003462.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003462hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0906 Phosphatidylinositol 3 100.0 3E-201 6E-206 1649.1 65.4 794 1-818 1-843 (843)
2 KOG0904 Phosphatidylinositol 3 100.0 3E-148 7E-153 1257.3 47.7 690 12-813 339-1075(1076)
3 KOG0905 Phosphoinositide 3-kin 100.0 4E-133 8E-138 1152.7 48.6 661 50-816 653-1348(1639)
4 cd00896 PI3Kc_III Phosphoinosi 100.0 3.1E-91 6.7E-96 765.4 39.3 346 472-817 2-350 (350)
5 cd00895 PI3Kc_C2_beta Phosphoi 100.0 1.4E-90 3.1E-95 753.8 37.3 335 472-815 2-354 (354)
6 cd05176 PI3Kc_C2_alpha Phospho 100.0 2.6E-88 5.7E-93 735.9 36.0 335 471-815 1-353 (353)
7 cd05177 PI3Kc_C2_gamma Phospho 100.0 8.1E-88 1.7E-92 735.2 36.2 335 472-815 2-354 (354)
8 cd05165 PI3Kc_I Phosphoinositi 100.0 1.5E-86 3.2E-91 728.1 34.2 336 472-815 2-366 (366)
9 cd05175 PI3Kc_IA_alpha Phospho 100.0 1.6E-86 3.5E-91 722.8 34.1 335 472-815 2-366 (366)
10 cd05174 PI3Kc_IA_delta Phospho 100.0 1.2E-85 2.6E-90 717.9 36.1 333 472-815 2-361 (361)
11 cd00894 PI3Kc_IB_gamma Phospho 100.0 9.1E-86 2E-90 719.8 34.5 335 472-814 2-364 (365)
12 cd05173 PI3Kc_IA_beta Phosphoi 100.0 3.6E-85 7.8E-90 716.3 36.8 334 472-815 2-361 (362)
13 cd05166 PI3Kc_II Phosphoinosit 100.0 1.3E-84 2.8E-89 713.2 37.5 334 472-815 2-353 (353)
14 cd00891 PI3Kc Phosphoinositide 100.0 2.9E-84 6.4E-89 711.5 36.7 334 472-815 2-352 (352)
15 cd05167 PI4Kc_III_alpha Phosph 100.0 3.6E-78 7.9E-83 650.6 32.4 287 524-815 1-308 (311)
16 KOG0902 Phosphatidylinositol 4 100.0 9.2E-76 2E-80 689.3 42.3 482 311-815 1293-1799(1803)
17 cd00893 PI4Kc_III Phosphoinosi 100.0 4.3E-71 9.4E-76 591.5 27.1 275 536-815 3-286 (289)
18 cd05168 PI4Kc_III_beta Phospho 100.0 1E-68 2.2E-73 574.2 27.0 265 547-815 15-290 (293)
19 cd05172 PIKKc_DNA-PK DNA-depen 100.0 7.9E-57 1.7E-61 471.3 21.3 224 533-764 1-234 (235)
20 cd00892 PIKKc_ATR ATR (Ataxia 100.0 1.2E-56 2.6E-61 470.7 22.2 224 534-764 2-236 (237)
21 COG5032 TEL1 Phosphatidylinosi 100.0 4.1E-54 8.9E-59 556.0 34.5 522 279-816 1486-2098(2105)
22 cd05169 PIKKc_TOR TOR (Target 100.0 6.7E-55 1.4E-59 469.2 20.6 225 533-764 1-279 (280)
23 cd00142 PI3Kc_like Phosphoinos 100.0 2.5E-54 5.5E-59 448.9 21.9 210 537-758 4-219 (219)
24 cd05164 PIKKc Phosphoinositide 100.0 1.1E-53 2.4E-58 444.4 21.3 212 534-758 2-222 (222)
25 cd05171 PIKKc_ATM Ataxia telan 100.0 1.9E-53 4.2E-58 456.9 21.1 223 535-764 3-278 (279)
26 KOG0903 Phosphatidylinositol 4 100.0 7.4E-53 1.6E-57 476.4 24.9 250 562-815 587-844 (847)
27 cd05170 PIKKc_SMG1 Suppressor 100.0 3.4E-51 7.3E-56 444.7 22.4 224 534-764 2-306 (307)
28 smart00146 PI3Kc Phosphoinosit 100.0 1.2E-50 2.6E-55 416.5 19.3 191 564-766 1-200 (202)
29 cd00872 PI3Ka_I Phosphoinositi 100.0 1.1E-49 2.3E-54 395.9 18.6 167 287-457 2-168 (171)
30 cd00870 PI3Ka_III Phosphoinosi 100.0 9.8E-50 2.1E-54 395.3 17.6 159 279-437 1-166 (166)
31 KOG0890 Protein kinase of the 100.0 1E-47 2.2E-52 473.7 35.8 440 350-817 1858-2382(2382)
32 cd05163 TRRAP TRansformation/t 100.0 1.2E-46 2.6E-51 398.6 20.8 225 534-764 2-252 (253)
33 PF00613 PI3Ka: Phosphoinositi 100.0 1.3E-46 2.8E-51 380.2 17.8 176 280-459 1-176 (184)
34 cd00869 PI3Ka_II Phosphoinosit 100.0 1.9E-46 4.1E-51 370.5 18.1 164 287-455 2-166 (169)
35 smart00145 PI3Ka Phosphoinosit 100.0 1.4E-45 3E-50 371.7 19.3 169 285-457 4-173 (184)
36 PF00454 PI3_PI4_kinase: Phosp 100.0 9.7E-46 2.1E-50 387.7 17.8 199 562-764 1-234 (235)
37 PTZ00303 phosphatidylinositol 100.0 1.2E-44 2.6E-49 405.2 19.5 267 519-801 934-1326(1374)
38 cd00864 PI3Ka Phosphoinositide 100.0 4.2E-42 9.1E-47 337.0 16.3 151 287-437 2-152 (152)
39 KOG0892 Protein kinase ATM/Tel 100.0 6.9E-41 1.5E-45 415.1 31.1 420 325-774 2241-2732(2806)
40 cd08397 C2_PI3K_class_III C2 d 100.0 3.4E-38 7.4E-43 311.6 15.1 145 33-183 15-159 (159)
41 cd00871 PI4Ka Phosphoinositide 100.0 9E-35 1.9E-39 288.8 15.4 142 292-439 10-152 (175)
42 cd08398 C2_PI3K_class_I_alpha 100.0 4.8E-31 1E-35 260.1 15.9 117 12-148 4-124 (158)
43 PF00792 PI3K_C2: Phosphoinosi 100.0 1.5E-31 3.2E-36 260.3 5.5 132 53-195 2-142 (142)
44 cd08399 C2_PI3K_class_I_gamma 100.0 1.5E-29 3.3E-34 253.1 16.0 120 10-147 4-139 (178)
45 cd08693 C2_PI3K_class_I_beta_d 100.0 1.6E-29 3.4E-34 253.5 16.1 121 11-149 3-139 (173)
46 cd04012 C2A_PI3K_class_II C2 d 100.0 4.5E-29 9.8E-34 250.2 15.0 156 11-230 3-171 (171)
47 cd08380 C2_PI3K_like C2 domain 100.0 1.8E-28 4E-33 242.2 15.5 125 11-152 3-129 (156)
48 KOG0891 DNA-dependent protein 99.9 7.3E-27 1.6E-31 297.8 4.2 236 528-766 1954-2238(2341)
49 smart00142 PI3K_C2 Phosphoinos 99.8 4.8E-20 1E-24 169.1 7.9 64 53-116 32-95 (100)
50 KOG0889 Histone acetyltransfer 99.4 5.2E-13 1.1E-17 172.3 14.7 230 529-764 3190-3481(3550)
51 cd08409 C2B_Synaptotagmin-15 C 97.1 0.0036 7.8E-08 60.7 10.6 77 51-129 33-109 (137)
52 cd08410 C2B_Synaptotagmin-17 C 97.1 0.0043 9.3E-08 59.9 10.7 79 52-132 34-112 (135)
53 cd08381 C2B_PI3K_class_II C2 d 97.0 0.0083 1.8E-07 57.0 11.4 105 5-129 3-108 (122)
54 cd08392 C2A_SLP-3 C2 domain fi 96.9 0.0092 2E-07 57.3 11.5 111 1-129 1-111 (128)
55 cd08680 C2_Kibra C2 domain fou 96.9 0.01 2.3E-07 56.8 11.7 79 51-130 33-111 (124)
56 cd08407 C2B_Synaptotagmin-13 C 96.9 0.0071 1.5E-07 59.0 10.5 74 53-128 38-111 (138)
57 cd08393 C2A_SLP-1_2 C2 domain 96.9 0.01 2.2E-07 56.5 11.4 77 52-130 36-112 (125)
58 cd04029 C2A_SLP-4_5 C2 domain 96.9 0.012 2.6E-07 56.2 11.4 76 52-129 36-111 (125)
59 smart00239 C2 Protein kinase C 96.8 0.0096 2.1E-07 52.2 10.0 74 52-131 20-93 (101)
60 cd08692 C2B_Tac2-N C2 domain s 96.8 0.0033 7.1E-08 61.1 7.1 74 53-129 35-109 (135)
61 cd08405 C2B_Synaptotagmin-7 C2 96.7 0.017 3.6E-07 55.7 11.2 76 52-129 35-110 (136)
62 cd08677 C2A_Synaptotagmin-13 C 96.6 0.021 4.5E-07 54.3 11.0 101 6-128 3-104 (118)
63 cd08402 C2B_Synaptotagmin-1 C2 96.6 0.029 6.2E-07 54.0 12.1 75 52-128 35-109 (136)
64 cd08685 C2_RGS-like C2 domain 96.6 0.019 4.1E-07 54.4 10.6 102 5-129 4-106 (119)
65 cd08406 C2B_Synaptotagmin-12 C 96.6 0.021 4.5E-07 55.6 11.1 77 51-129 34-110 (136)
66 cd08408 C2B_Synaptotagmin-14_1 96.6 0.02 4.3E-07 55.8 11.0 76 52-129 35-111 (138)
67 cd08388 C2A_Synaptotagmin-4-11 96.5 0.022 4.9E-07 54.5 10.7 118 5-145 6-124 (128)
68 cd00276 C2B_Synaptotagmin C2 d 96.5 0.024 5.1E-07 53.9 10.8 76 52-129 34-109 (134)
69 cd08696 C2_Dock-C C2 domains f 96.5 0.032 6.9E-07 56.8 11.9 66 80-147 64-135 (179)
70 cd08385 C2A_Synaptotagmin-1-5- 96.5 0.03 6.6E-07 52.8 11.1 94 16-129 16-109 (124)
71 cd08387 C2A_Synaptotagmin-8 C2 96.4 0.038 8.3E-07 52.1 11.6 74 52-129 36-109 (124)
72 cd08384 C2B_Rabphilin_Doc2 C2 96.4 0.035 7.5E-07 53.1 11.3 74 52-127 33-106 (133)
73 cd08395 C2C_Munc13 C2 domain t 96.4 0.012 2.7E-07 56.0 8.1 90 52-146 19-109 (120)
74 cd08404 C2B_Synaptotagmin-4 C2 96.4 0.033 7.1E-07 53.7 11.0 76 52-129 35-110 (136)
75 PF13575 DUF4135: Domain of un 96.3 0.04 8.7E-07 62.3 12.6 135 532-700 44-178 (370)
76 cd04031 C2A_RIM1alpha C2 domai 96.2 0.051 1.1E-06 51.1 11.1 76 52-129 36-112 (125)
77 cd08386 C2A_Synaptotagmin-7 C2 96.2 0.046 1E-06 51.5 10.7 104 6-129 5-110 (125)
78 cd04041 C2A_fungal C2 domain f 96.2 0.03 6.5E-07 52.0 9.2 75 52-129 22-96 (111)
79 cd08403 C2B_Synaptotagmin-3-5- 96.2 0.053 1.1E-06 52.0 11.1 75 52-128 34-108 (134)
80 cd04030 C2C_KIAA1228 C2 domain 96.1 0.066 1.4E-06 50.6 11.4 106 6-129 5-113 (127)
81 cd08688 C2_KIAA0528-like C2 do 96.1 0.036 7.8E-07 51.4 9.2 71 52-129 20-91 (110)
82 cd04028 C2B_RIM1alpha C2 domai 96.1 0.021 4.5E-07 56.4 7.8 72 52-128 50-122 (146)
83 PF00168 C2: C2 domain; Inter 96.1 0.056 1.2E-06 46.3 9.7 67 52-124 19-85 (85)
84 cd08694 C2_Dock-A C2 domains f 96.0 0.026 5.7E-07 58.0 8.7 67 80-147 63-134 (196)
85 cd08390 C2A_Synaptotagmin-15-1 96.0 0.044 9.5E-07 51.5 9.7 74 52-129 35-108 (123)
86 cd04009 C2B_Munc13-like C2 dom 96.0 0.092 2E-06 50.4 11.9 76 52-127 36-113 (133)
87 cd08521 C2A_SLP C2 domain firs 96.0 0.081 1.7E-06 49.6 11.2 76 52-129 35-110 (123)
88 cd08389 C2A_Synaptotagmin-14_1 96.0 0.07 1.5E-06 50.8 10.7 94 16-130 16-110 (124)
89 cd04032 C2_Perforin C2 domain 95.9 0.068 1.5E-06 51.4 10.4 69 52-128 47-115 (127)
90 cd04037 C2E_Ferlin C2 domain f 95.9 0.065 1.4E-06 50.9 10.1 70 52-128 20-89 (124)
91 PF14429 DOCK-C2: C2 domain in 95.8 0.048 1E-06 55.6 9.3 65 80-146 69-137 (184)
92 cd08682 C2_Rab11-FIP_classI C2 95.7 0.067 1.4E-06 50.8 9.6 71 52-128 19-91 (126)
93 PLN02952 phosphoinositide phos 95.7 0.057 1.2E-06 64.3 10.9 85 51-144 495-580 (599)
94 PLN02222 phosphoinositide phos 95.7 0.058 1.2E-06 64.1 10.7 86 51-145 477-563 (581)
95 cd00030 C2 C2 domain. The C2 d 95.6 0.098 2.1E-06 45.2 9.5 73 51-131 18-90 (102)
96 cd00275 C2_PLC_like C2 domain 95.6 0.19 4.2E-06 47.2 12.1 84 52-143 24-108 (128)
97 cd04036 C2_cPLA2 C2 domain pre 95.5 0.082 1.8E-06 49.6 9.3 70 52-128 20-89 (119)
98 cd08679 C2_DOCK180_related C2 95.3 0.098 2.1E-06 53.2 9.7 74 74-148 56-135 (178)
99 cd04044 C2A_Tricalbin-like C2 95.3 0.052 1.1E-06 50.8 7.0 69 53-129 24-92 (124)
100 cd04035 C2A_Rabphilin_Doc2 C2 95.2 0.26 5.5E-06 46.4 11.5 73 52-127 35-108 (123)
101 PLN02230 phosphoinositide phos 95.1 0.098 2.1E-06 62.3 10.1 86 51-145 494-580 (598)
102 cd04051 C2_SRC2_like C2 domain 95.1 0.13 2.9E-06 48.4 9.2 73 52-129 20-94 (125)
103 cd04019 C2C_MCTP_PRT_plant C2 95.1 0.17 3.6E-06 50.1 10.2 70 51-129 19-89 (150)
104 cd04050 C2B_Synaptotagmin-like 95.0 0.15 3.2E-06 46.8 9.2 67 51-129 19-85 (105)
105 cd08382 C2_Smurf-like C2 domai 95.0 0.18 3.9E-06 47.7 10.0 69 52-130 20-90 (123)
106 cd04045 C2C_Tricalbin-like C2 95.0 0.16 3.4E-06 48.2 9.5 81 52-141 21-101 (120)
107 cd04033 C2_NEDD4_NEDD4L C2 dom 95.0 0.19 4E-06 47.9 10.0 73 52-129 20-94 (133)
108 cd04022 C2A_MCTP_PRT_plant C2 94.9 0.13 2.9E-06 48.8 8.8 71 52-128 20-91 (127)
109 cd04018 C2C_Ferlin C2 domain t 94.9 0.094 2E-06 52.0 7.9 70 52-129 34-103 (151)
110 cd04020 C2B_SLP_1-2-3-4 C2 dom 94.9 0.31 6.7E-06 48.8 11.6 74 52-127 47-121 (162)
111 cd04039 C2_PSD C2 domain prese 94.9 0.093 2E-06 48.9 7.3 68 53-128 26-93 (108)
112 cd04042 C2A_MCTP_PRT C2 domain 94.9 0.19 4.2E-06 47.2 9.6 68 52-128 20-87 (121)
113 cd04021 C2_E3_ubiquitin_ligase 94.8 0.24 5.1E-06 47.2 10.1 66 52-127 21-86 (125)
114 cd08375 C2_Intersectin C2 doma 94.7 0.24 5.2E-06 48.0 10.2 69 52-129 35-103 (136)
115 PLN02223 phosphoinositide phos 94.7 0.18 3.8E-06 59.3 10.5 86 51-145 433-519 (537)
116 cd04026 C2_PKC_alpha_gamma C2 94.6 0.4 8.6E-06 45.6 11.2 73 52-127 33-105 (131)
117 cd08376 C2B_MCTP_PRT C2 domain 94.6 0.3 6.6E-06 45.3 10.2 69 52-129 20-88 (116)
118 cd04025 C2B_RasA1_RasA4 C2 dom 94.5 0.35 7.6E-06 45.5 10.3 68 53-129 21-88 (123)
119 cd04040 C2D_Tricalbin-like C2 94.4 0.31 6.6E-06 45.2 9.8 69 53-129 20-88 (115)
120 cd04011 C2B_Ferlin C2 domain s 94.3 0.17 3.7E-06 46.9 7.7 72 52-129 20-92 (111)
121 cd08400 C2_Ras_p21A1 C2 domain 94.2 0.36 7.7E-06 46.0 9.9 70 52-130 21-90 (126)
122 cd08678 C2_C21orf25-like C2 do 94.2 0.31 6.7E-06 46.3 9.4 70 52-129 17-86 (126)
123 cd08379 C2D_MCTP_PRT_plant C2 94.1 0.4 8.6E-06 46.1 9.9 68 51-128 22-95 (126)
124 cd08690 C2_Freud-1 C2 domain f 94.0 0.49 1.1E-05 47.2 10.7 77 51-129 23-106 (155)
125 cd08697 C2_Dock-D C2 domains f 94.0 0.25 5.4E-06 50.7 8.7 66 79-145 65-139 (185)
126 cd08373 C2A_Ferlin C2 domain f 93.9 0.45 9.7E-06 45.1 9.9 69 52-127 14-82 (127)
127 cd04014 C2_PKC_epsilon C2 doma 93.9 0.2 4.4E-06 47.8 7.6 68 52-129 34-101 (132)
128 cd04043 C2_Munc13_fungal C2 do 93.8 0.48 1E-05 44.6 10.0 70 52-127 21-90 (126)
129 cd04024 C2A_Synaptotagmin-like 93.7 0.48 1E-05 44.6 9.6 68 53-129 24-91 (128)
130 cd04048 C2A_Copine C2 domain f 93.6 0.19 4E-06 47.3 6.7 75 52-129 20-99 (120)
131 cd08681 C2_fungal_Inn1p-like C 93.5 0.52 1.1E-05 43.9 9.4 68 52-129 21-89 (118)
132 cd04038 C2_ArfGAP C2 domain pr 93.4 0.58 1.3E-05 46.1 10.0 66 52-127 21-86 (145)
133 cd04049 C2_putative_Elicitor-r 93.2 0.71 1.5E-05 43.5 9.9 72 52-129 21-93 (124)
134 PLN02228 Phosphoinositide phos 93.0 0.6 1.3E-05 55.6 11.0 85 51-144 456-542 (567)
135 cd08695 C2_Dock-B C2 domains f 93.0 0.24 5.2E-06 50.9 6.8 67 80-147 63-132 (189)
136 cd08378 C2B_MCTP_PRT_plant C2 92.9 0.74 1.6E-05 43.6 9.6 68 52-129 16-83 (121)
137 cd08377 C2C_MCTP_PRT C2 domain 92.8 0.95 2.1E-05 42.1 10.1 68 52-129 21-88 (119)
138 cd04010 C2B_RasA3 C2 domain se 92.8 0.35 7.6E-06 47.8 7.4 77 52-129 18-106 (148)
139 cd04052 C2B_Tricalbin-like C2 92.8 0.39 8.5E-06 44.6 7.4 67 53-128 13-79 (111)
140 KOG0169 Phosphoinositide-speci 92.8 0.35 7.6E-06 58.2 8.6 107 18-145 618-726 (746)
141 cd08374 C2F_Ferlin C2 domain s 92.7 0.32 7E-06 47.3 6.9 77 51-128 23-119 (133)
142 cd04047 C2B_Copine C2 domain s 92.5 0.42 9.1E-06 44.0 7.1 74 52-129 20-97 (110)
143 cd04016 C2_Tollip C2 domain pr 92.4 0.46 9.9E-06 45.4 7.4 67 52-128 21-88 (121)
144 cd08391 C2A_C2C_Synaptotagmin_ 92.3 0.53 1.1E-05 43.8 7.6 68 52-129 27-94 (121)
145 cd08675 C2B_RasGAP C2 domain s 92.2 0.47 1E-05 46.0 7.4 75 52-128 18-104 (137)
146 cd08676 C2A_Munc13-like C2 dom 92.0 1 2.2E-05 44.9 9.6 51 72-129 91-141 (153)
147 cd04054 C2A_Rasal1_RasA4 C2 do 91.9 1.3 2.7E-05 41.8 9.8 68 52-128 20-87 (121)
148 cd04015 C2_plant_PLD C2 domain 91.7 0.64 1.4E-05 46.3 7.8 68 50-127 55-122 (158)
149 cd08686 C2_ABR C2 domain in th 91.6 1.2 2.6E-05 42.5 9.1 69 53-127 15-90 (118)
150 KOG1028 Ca2+-dependent phospho 90.7 0.52 1.1E-05 54.4 6.9 76 49-126 315-390 (421)
151 cd04792 LanM-like LanM-like pr 90.6 1.9 4E-05 54.0 12.3 120 544-700 99-218 (825)
152 cd08691 C2_NEDL1-like C2 domai 90.6 0.96 2.1E-05 44.1 7.7 73 52-129 20-103 (137)
153 PF14186 Aida_C2: Cytoskeletal 90.5 1.8 3.8E-05 42.8 9.3 89 53-145 31-123 (147)
154 cd04046 C2_Calpain C2 domain p 89.9 2.4 5.2E-05 40.3 9.7 67 52-129 23-89 (126)
155 cd04017 C2D_Ferlin C2 domain f 89.5 1.7 3.7E-05 41.8 8.4 69 52-126 21-95 (135)
156 cd04027 C2B_Munc13 C2 domain s 88.6 3.2 6.9E-05 39.4 9.5 66 53-128 22-98 (127)
157 cd08383 C2A_RasGAP C2 domain ( 88.3 4.4 9.6E-05 37.3 10.1 71 52-129 17-87 (117)
158 cd08401 C2A_RasA2_RasA3 C2 dom 87.8 1.9 4E-05 40.9 7.3 68 52-128 21-88 (121)
159 cd04013 C2_SynGAP_like C2 doma 86.0 3.9 8.4E-05 40.5 8.6 67 54-129 28-98 (146)
160 PLN03008 Phospholipase D delta 83.8 2.3 4.9E-05 52.6 6.9 80 51-145 75-154 (868)
161 TIGR03724 arch_bud32 Kae1-asso 83.0 5.6 0.00012 40.0 8.6 73 600-697 60-136 (199)
162 TIGR03843 conserved hypothetic 82.8 1.1 2.3E-05 47.8 3.2 112 592-706 63-180 (253)
163 COG0661 AarF Predicted unusual 82.6 2.7 5.8E-05 49.9 6.8 86 596-697 225-312 (517)
164 cd08394 C2A_Munc13 C2 domain f 81.8 4.4 9.5E-05 39.2 6.8 62 56-129 23-84 (127)
165 KOG1030 Predicted Ca2+-depende 79.4 4.1 8.9E-05 41.1 5.9 66 53-128 27-92 (168)
166 cd05603 STKc_SGK2 Catalytic do 74.0 30 0.00065 37.6 11.5 24 674-697 120-143 (321)
167 COG5038 Ca2+-dependent lipid-b 72.8 11 0.00024 47.9 8.3 88 18-128 438-525 (1227)
168 cd05088 PTKc_Tie2 Catalytic do 72.7 69 0.0015 34.4 13.8 46 654-699 126-173 (303)
169 KOG1028 Ca2+-dependent phospho 72.2 24 0.00052 41.0 10.5 77 52-132 187-263 (421)
170 cd05590 STKc_nPKC_eta Catalyti 72.1 31 0.00066 37.6 11.0 25 674-698 120-144 (320)
171 PRK14879 serine/threonine prot 70.4 34 0.00073 34.6 10.2 77 599-697 61-141 (211)
172 cd06625 STKc_MEKK3_like Cataly 70.1 1E+02 0.0022 31.8 14.0 24 674-697 128-151 (263)
173 PF06293 Kdo: Lipopolysacchari 69.5 35 0.00075 35.2 10.1 98 578-697 57-168 (206)
174 cd08684 C2A_Tac2-N C2 domain f 69.4 7.9 0.00017 35.2 4.4 72 51-128 19-90 (103)
175 KOG0608 Warts/lats-like serine 68.6 7.2 0.00016 46.8 5.2 35 665-699 740-778 (1034)
176 cd05602 STKc_SGK1 Catalytic do 67.5 53 0.0011 35.8 11.6 28 670-697 114-143 (325)
177 cd05053 PTKc_FGFR Catalytic do 67.3 89 0.0019 33.0 13.1 25 674-698 156-180 (293)
178 cd05627 STKc_NDR2 Catalytic do 67.1 42 0.00091 37.2 10.9 28 671-698 120-149 (360)
179 cd05604 STKc_SGK3 Catalytic do 66.9 59 0.0013 35.4 11.9 45 654-698 98-144 (325)
180 cd08689 C2_fungal_Pkc1p C2 dom 64.4 20 0.00043 33.8 6.2 49 81-135 43-91 (109)
181 cd05575 STKc_SGK Catalytic dom 63.6 73 0.0016 34.6 11.8 25 674-698 120-144 (323)
182 KOG0662 Cyclin-dependent kinas 62.9 19 0.00042 37.0 6.3 60 631-697 86-148 (292)
183 PRK04750 ubiB putative ubiquin 62.4 4.5 9.7E-05 48.3 2.1 24 674-697 284-311 (537)
184 PRK10359 lipopolysaccharide co 61.9 5.2 0.00011 42.6 2.2 23 674-697 159-181 (232)
185 KOG0696 Serine/threonine prote 61.7 9.1 0.0002 43.8 4.1 73 52-127 200-272 (683)
186 cd05587 STKc_cPKC Catalytic do 60.7 95 0.0021 33.8 12.0 27 671-697 120-148 (324)
187 cd05626 STKc_LATS2 Catalytic d 60.5 71 0.0015 35.8 11.2 44 654-697 103-148 (381)
188 cd05628 STKc_NDR1 Catalytic do 60.5 68 0.0015 35.6 11.0 27 671-697 120-148 (363)
189 cd05151 ChoK Choline Kinase (C 60.0 7 0.00015 38.0 2.7 27 671-698 109-135 (170)
190 TIGR01982 UbiB 2-polyprenylphe 60.0 6.5 0.00014 45.7 2.8 24 674-697 281-304 (437)
191 cd05616 STKc_cPKC_beta Catalyt 59.6 84 0.0018 34.2 11.4 25 674-698 125-149 (323)
192 cd05581 STKc_PDK1 Catalytic do 59.3 67 0.0014 33.4 10.2 25 674-698 126-150 (280)
193 cd05617 STKc_aPKC_zeta Catalyt 59.3 1E+02 0.0022 33.7 11.9 25 674-698 120-144 (327)
194 cd05145 RIO1_like RIO kinase f 59.1 6.6 0.00014 39.8 2.4 27 671-698 137-165 (190)
195 cd05586 STKc_Sck1_like Catalyt 58.2 94 0.002 33.8 11.5 27 671-697 115-143 (330)
196 KOG0594 Protein kinase PCTAIRE 57.9 20 0.00043 40.0 6.0 77 631-715 102-181 (323)
197 cd05147 RIO1_euk RIO kinase fa 57.2 6.6 0.00014 40.1 2.0 28 671-699 137-166 (190)
198 cd05573 STKc_ROCK_NDR_like Cat 57.1 63 0.0014 35.3 9.9 25 674-698 125-149 (350)
199 cd05598 STKc_LATS Catalytic do 56.7 78 0.0017 35.2 10.7 44 654-697 103-148 (376)
200 KOG0667 Dual-specificity tyros 54.9 41 0.00089 40.4 8.2 115 566-696 218-337 (586)
201 cd05588 STKc_aPKC Catalytic do 54.4 1.3E+02 0.0028 32.8 11.8 45 654-698 98-144 (329)
202 cd05122 PKc_STE Catalytic doma 53.9 2.4E+02 0.0053 28.2 13.3 49 671-719 119-172 (253)
203 cd05601 STKc_CRIK Catalytic do 53.6 1.7E+02 0.0036 31.8 12.5 24 674-697 126-149 (330)
204 PLN03200 cellulose synthase-in 53.4 23 0.00049 48.5 6.4 82 52-141 1998-2080(2102)
205 cd05144 RIO2_C RIO kinase fami 52.6 13 0.00028 37.7 3.3 28 674-701 149-176 (198)
206 KOG0616 cAMP-dependent protein 52.5 8.6 0.00019 42.4 2.0 58 663-720 153-217 (355)
207 cd05625 STKc_LATS1 Catalytic d 52.3 1.2E+02 0.0027 33.8 11.4 45 653-697 102-148 (382)
208 cd05571 STKc_PKB Catalytic dom 52.2 1.3E+02 0.0027 32.8 11.2 24 674-697 119-142 (323)
209 PF10358 NT-C2: N-terminal C2 52.0 92 0.002 29.8 9.0 93 17-132 8-106 (143)
210 cd05591 STKc_nPKC_epsilon Cata 51.9 1.6E+02 0.0034 31.9 11.9 24 674-697 120-143 (321)
211 cd05069 PTKc_Yes Catalytic dom 51.8 1.5E+02 0.0032 30.7 11.3 24 674-697 126-149 (260)
212 cd05618 STKc_aPKC_iota Catalyt 51.5 1.9E+02 0.0041 31.6 12.5 25 674-698 120-144 (329)
213 PRK12274 serine/threonine prot 51.1 24 0.00053 37.3 5.0 31 668-698 107-140 (218)
214 PF03130 HEAT_PBS: PBS lyase H 51.0 26 0.00056 24.3 3.6 26 372-400 1-26 (27)
215 cd05574 STKc_phototropin_like 49.8 3.5E+02 0.0076 28.9 15.0 27 673-699 126-152 (316)
216 cd05101 PTKc_FGFR2 Catalytic d 49.5 2.6E+02 0.0056 29.8 13.0 25 674-698 161-185 (304)
217 cd05597 STKc_DMPK_like Catalyt 49.3 2.5E+02 0.0055 30.6 13.1 66 654-719 104-178 (331)
218 PRK10271 thiK thiamine kinase; 49.1 14 0.00031 38.1 2.9 35 668-703 76-110 (188)
219 cd05042 PTKc_Aatyk Catalytic d 49.1 38 0.00081 35.4 6.2 45 655-699 103-149 (269)
220 cd06631 STKc_YSK4 Catalytic do 48.5 1.3E+02 0.0028 31.1 10.2 26 673-698 125-150 (265)
221 cd05594 STKc_PKB_alpha Catalyt 48.2 1.9E+02 0.0042 31.3 11.9 27 671-697 115-143 (325)
222 cd05099 PTKc_FGFR4 Catalytic d 47.7 2.6E+02 0.0057 30.0 12.8 26 674-699 158-183 (314)
223 cd06607 STKc_TAO Catalytic dom 47.5 1.9E+02 0.004 31.0 11.5 44 674-717 139-184 (307)
224 KOG0612 Rho-associated, coiled 47.5 29 0.00063 44.5 5.6 49 674-722 199-254 (1317)
225 PTZ00426 cAMP-dependent protei 46.8 40 0.00086 37.3 6.3 65 654-718 133-202 (340)
226 TIGR02172 Fb_sc_TIGR02172 Fibr 46.0 14 0.00031 38.8 2.5 25 672-697 156-180 (226)
227 cd05600 STKc_Sid2p_Dbf2p Catal 45.9 1.7E+02 0.0037 31.8 11.0 25 674-698 125-149 (333)
228 cd05085 PTKc_Fer Catalytic dom 45.8 3.4E+02 0.0074 27.6 12.9 25 674-698 117-141 (250)
229 cd05630 STKc_GRK6 Catalytic do 45.7 3.3E+02 0.0072 28.8 13.0 46 653-698 103-150 (285)
230 PRK05231 homoserine kinase; Pr 45.1 43 0.00094 36.5 6.2 71 670-745 188-258 (319)
231 cd05580 STKc_PKA Catalytic dom 44.9 3.6E+02 0.0078 28.5 13.1 45 673-717 124-171 (290)
232 cd05119 RIO RIO kinase family, 44.6 16 0.00034 36.3 2.4 27 673-700 138-164 (187)
233 KOG3087 Serine/threonine prote 44.6 2.8E+02 0.0062 29.2 11.2 104 577-700 55-166 (229)
234 cd05100 PTKc_FGFR3 Catalytic d 44.5 2.2E+02 0.0047 31.0 11.6 25 674-698 158-182 (334)
235 PF06702 DUF1193: Protein of u 44.1 53 0.0011 34.8 6.1 108 658-779 89-199 (221)
236 PRK01723 3-deoxy-D-manno-octul 43.6 18 0.00039 38.4 2.8 37 661-697 151-189 (239)
237 cd05615 STKc_cPKC_alpha Cataly 43.1 2.1E+02 0.0046 31.1 11.2 25 674-698 125-149 (323)
238 cd05156 ChoK_euk Choline Kinas 42.6 19 0.00042 39.0 2.9 35 667-701 177-215 (302)
239 cd05592 STKc_nPKC_theta_delta 42.5 2.2E+02 0.0047 30.9 11.1 24 674-697 120-143 (316)
240 PRK15123 lipopolysaccharide co 42.1 86 0.0019 34.1 7.7 70 613-697 113-192 (268)
241 KOG0598 Ribosomal protein S6 k 42.1 13 0.00029 41.7 1.6 25 674-698 149-173 (357)
242 cd05593 STKc_PKB_gamma Catalyt 42.1 2.2E+02 0.0047 31.1 11.1 43 655-697 98-142 (328)
243 cd06614 STKc_PAK Catalytic dom 41.8 2.8E+02 0.0061 29.1 11.7 30 669-698 133-164 (286)
244 cd05609 STKc_MAST Catalytic do 41.6 3.7E+02 0.0081 28.6 12.7 25 673-697 124-148 (305)
245 PF07162 B9-C2: Ciliary basal 41.5 1.8E+02 0.0039 29.2 9.5 90 51-145 15-116 (168)
246 cd05610 STKc_MASTL Catalytic d 41.0 2.5E+02 0.0055 34.5 12.4 24 674-697 128-151 (669)
247 PHA00451 protein kinase 41.0 59 0.0013 35.5 6.0 64 624-693 147-212 (362)
248 PF01636 APH: Phosphotransfera 40.8 16 0.00035 36.9 1.9 30 668-697 165-195 (239)
249 cd05577 STKc_GRK Catalytic dom 40.5 4.5E+02 0.0097 27.4 13.1 25 674-698 119-143 (277)
250 cd05070 PTKc_Fyn_Yrk Catalytic 40.4 2.6E+02 0.0056 28.8 11.0 25 674-698 126-150 (260)
251 cd05614 STKc_MSK2_N N-terminal 40.1 62 0.0014 35.2 6.4 24 674-697 129-152 (332)
252 PLN03224 probable serine/threo 39.9 1E+02 0.0022 36.7 8.6 86 613-698 263-357 (507)
253 cd06656 STKc_PAK3 Catalytic do 39.9 4.9E+02 0.011 27.7 16.1 44 674-717 139-188 (297)
254 cd05585 STKc_YPK1_like Catalyt 39.5 2.5E+02 0.0054 30.2 11.0 24 674-697 117-140 (312)
255 cd05595 STKc_PKB_beta Catalyti 39.0 2.2E+02 0.0048 30.9 10.6 25 674-698 119-143 (323)
256 smart00090 RIO RIO-like kinase 38.7 49 0.0011 35.1 5.1 43 655-698 151-196 (237)
257 TIGR00938 thrB_alt homoserine 38.7 71 0.0015 34.8 6.6 29 669-697 187-215 (307)
258 cd05621 STKc_ROCK2 Catalytic d 38.3 1.2E+02 0.0025 34.1 8.4 51 670-720 160-219 (370)
259 cd05607 STKc_GRK7 Catalytic do 38.2 4.4E+02 0.0095 27.7 12.4 30 669-698 112-143 (277)
260 cd05154 ACAD10_11_like Acyl-Co 37.3 25 0.00054 35.5 2.6 30 668-697 173-204 (223)
261 cd05570 STKc_PKC Catalytic dom 36.9 2.9E+02 0.0064 29.8 11.1 24 674-697 120-143 (318)
262 cd05116 PTKc_Syk Catalytic dom 36.7 4.9E+02 0.011 26.7 12.8 45 654-698 97-143 (257)
263 cd07871 STKc_PCTAIRE3 Catalyti 36.4 66 0.0014 34.2 5.8 45 654-698 105-151 (288)
264 cd05033 PTKc_EphR Catalytic do 36.3 5E+02 0.011 26.8 13.1 25 674-698 130-154 (266)
265 cd05579 STKc_MAST_like Catalyt 36.1 3.1E+02 0.0068 27.9 10.7 26 674-699 117-142 (265)
266 cd05044 PTKc_c-ros Catalytic d 35.7 92 0.002 32.3 6.6 24 674-697 130-158 (269)
267 cd05153 HomoserineK_II Homoser 35.6 57 0.0012 35.1 5.2 29 669-697 175-203 (296)
268 cd06638 STKc_myosinIIIA Cataly 35.6 86 0.0019 32.9 6.5 43 674-716 148-196 (286)
269 PF07035 Mic1: Colon cancer-as 35.6 71 0.0015 32.4 5.4 76 356-431 61-146 (167)
270 cd05059 PTKc_Tec_like Catalyti 35.1 80 0.0017 32.7 6.0 24 674-697 124-147 (256)
271 KOG0690 Serine/threonine prote 34.9 1E+02 0.0023 34.6 6.8 44 674-717 292-341 (516)
272 cd08215 STKc_Nek Catalytic dom 34.8 4.7E+02 0.01 26.4 11.7 27 673-699 126-152 (258)
273 PF13646 HEAT_2: HEAT repeats; 33.5 38 0.00082 29.2 2.8 32 368-402 43-74 (88)
274 cd05049 PTKc_Trk Catalytic dom 33.3 5.2E+02 0.011 26.8 12.0 96 599-697 71-169 (280)
275 cd05624 STKc_MRCK_beta Catalyt 33.2 99 0.0022 33.8 6.7 46 674-719 126-178 (331)
276 cd06634 STKc_TAO2 Catalytic do 33.1 2E+02 0.0043 30.9 8.9 46 674-719 139-186 (308)
277 cd05629 STKc_NDR_like_fungal C 33.1 4.4E+02 0.0095 29.3 11.9 24 674-697 125-148 (377)
278 cd05096 PTKc_DDR1 Catalytic do 33.0 95 0.0021 33.2 6.4 43 655-697 141-185 (304)
279 cd07873 STKc_PCTAIRE1 Catalyti 32.8 80 0.0017 33.7 5.8 25 674-698 128-152 (301)
280 PF10366 Vps39_1: Vacuolar sor 32.6 64 0.0014 30.2 4.3 75 315-389 6-98 (108)
281 cd05596 STKc_ROCK Catalytic do 32.5 4.1E+02 0.0088 29.7 11.6 48 671-718 161-217 (370)
282 PRK11768 serine/threonine prot 32.4 83 0.0018 34.9 5.9 29 667-697 194-222 (325)
283 cd06635 STKc_TAO1 Catalytic do 32.3 2.4E+02 0.0053 30.4 9.5 45 674-718 149-195 (317)
284 PF06176 WaaY: Lipopolysacchar 32.3 35 0.00077 36.3 2.8 125 542-697 37-181 (229)
285 cd05084 PTKc_Fes Catalytic dom 32.1 1.1E+02 0.0023 31.6 6.3 25 674-698 118-142 (252)
286 cd05120 APH_ChoK_like Aminogly 32.1 40 0.00087 31.0 2.9 25 674-698 113-137 (155)
287 cd05066 PTKc_EphR_A Catalytic 32.0 5.4E+02 0.012 26.6 11.8 25 674-698 130-154 (267)
288 KOG0603 Ribosomal protein S6 k 32.0 31 0.00067 41.5 2.5 28 673-700 438-466 (612)
289 PF03701 UPF0181: Uncharacteri 31.7 73 0.0016 25.9 3.7 42 758-799 3-45 (51)
290 cd05623 STKc_MRCK_alpha Cataly 31.4 1.1E+02 0.0023 33.5 6.6 46 674-719 126-178 (332)
291 cd07869 STKc_PFTAIRE1 Catalyti 31.3 2.5E+02 0.0054 29.9 9.3 25 674-698 127-151 (303)
292 cd06637 STKc_TNIK Catalytic do 30.9 6.1E+02 0.013 26.1 17.7 44 674-717 135-184 (272)
293 cd07839 STKc_CDK5 Catalytic do 30.9 3.1E+02 0.0068 28.6 9.8 44 654-697 101-146 (284)
294 cd05083 PTKc_Chk Catalytic dom 30.7 1.2E+02 0.0027 31.1 6.6 25 674-698 124-148 (254)
295 cd05155 APH_ChoK_like_1 Unchar 30.5 38 0.00082 35.4 2.7 30 668-697 163-192 (235)
296 cd05599 STKc_NDR_like Catalyti 30.4 3.6E+02 0.0078 29.6 10.6 45 654-698 103-149 (364)
297 PHA03390 pk1 serine/threonine- 30.4 3.3E+02 0.0072 28.5 9.9 65 654-718 111-180 (267)
298 cd05109 PTKc_HER2 Catalytic do 30.0 1.1E+02 0.0024 32.1 6.2 24 674-697 133-156 (279)
299 cd05075 PTKc_Axl Catalytic dom 29.4 1.3E+02 0.0028 31.2 6.6 25 674-698 136-160 (272)
300 cd05582 STKc_RSK_N N-terminal 29.3 1.2E+02 0.0026 32.8 6.4 25 674-698 122-146 (318)
301 cd05087 PTKc_Aatyk1_Aatyk3 Cat 29.2 1.3E+02 0.0028 31.4 6.5 25 674-698 124-148 (269)
302 cd06636 STKc_MAP4K4_6 Catalyti 29.2 1.7E+02 0.0038 30.6 7.5 25 674-698 145-169 (282)
303 COG0510 ycfN Thiamine kinase a 29.1 43 0.00094 36.4 2.9 34 669-702 153-186 (269)
304 COG3140 Uncharacterized protei 29.1 73 0.0016 26.3 3.3 44 757-800 2-46 (60)
305 cd07861 STKc_CDK1_euk Catalyti 28.7 1E+02 0.0022 32.2 5.7 24 674-697 125-148 (285)
306 KOG1328 Synaptic vesicle prote 28.6 1.1E+02 0.0025 37.5 6.2 107 74-189 181-340 (1103)
307 cd05572 STKc_cGK_PKG Catalytic 28.5 6.6E+02 0.014 25.7 13.8 28 671-698 114-141 (262)
308 cd05576 STKc_RPK118_like Catal 28.5 1.2E+02 0.0027 31.1 6.1 24 674-697 109-132 (237)
309 cd05111 PTK_HER3 Pseudokinase 28.4 1.3E+02 0.0029 31.7 6.4 24 674-697 133-156 (279)
310 cd06608 STKc_myosinIII_like Ca 28.3 75 0.0016 32.8 4.5 25 674-698 137-161 (275)
311 cd05039 PTKc_Csk_like Catalyti 28.3 6.5E+02 0.014 25.6 12.8 47 653-699 103-151 (256)
312 cd07837 STKc_CdkB_plant Cataly 28.3 4.9E+02 0.011 27.3 10.8 24 674-697 134-158 (295)
313 cd05097 PTKc_DDR_like Catalyti 27.9 7.4E+02 0.016 26.1 12.5 25 673-697 152-176 (295)
314 cd06628 STKc_MAPKKK_Byr2_like 27.7 3.8E+02 0.0083 27.6 9.7 25 674-698 130-154 (267)
315 cd05157 ETNK_euk Ethanolamine 27.6 50 0.0011 34.2 3.0 33 669-701 170-203 (235)
316 cd05108 PTKc_EGFR Catalytic do 27.5 6.9E+02 0.015 26.7 12.0 29 670-698 127-157 (316)
317 cd05048 PTKc_Ror Catalytic Dom 27.4 1.6E+02 0.0035 30.8 6.8 24 674-697 148-171 (283)
318 PRK10345 hypothetical protein; 27.2 1.4E+02 0.0031 31.1 6.2 23 673-695 128-154 (210)
319 cd05038 PTKc_Jak_rpt2 Catalyti 27.1 1.7E+02 0.0036 30.5 6.9 25 674-698 133-157 (284)
320 cd05608 STKc_GRK1 Catalytic do 27.1 7.5E+02 0.016 25.9 12.0 25 674-698 121-145 (280)
321 cd08224 STKc_Nek6_Nek7 Catalyt 27.0 6.9E+02 0.015 25.5 14.4 24 674-697 130-153 (267)
322 cd05071 PTKc_Src Catalytic dom 26.9 7.2E+02 0.016 25.7 12.7 25 674-698 126-150 (262)
323 KOG0694 Serine/threonine prote 26.9 1.2E+02 0.0027 37.0 6.2 116 559-697 392-515 (694)
324 cd06657 STKc_PAK4 Catalytic do 26.9 83 0.0018 33.7 4.6 44 655-698 119-164 (292)
325 cd05622 STKc_ROCK1 Catalytic d 26.8 1.4E+02 0.003 33.5 6.5 47 674-720 166-219 (371)
326 cd05118 STKc_CMGC Catalytic do 26.6 1.1E+02 0.0024 31.8 5.4 45 674-718 122-172 (283)
327 cd08219 STKc_Nek3 Catalytic do 26.4 1.8E+02 0.004 29.8 7.0 25 674-698 124-148 (255)
328 PRK05114 hypothetical protein; 26.3 97 0.0021 25.9 3.6 44 758-801 3-47 (59)
329 PF00069 Pkinase: Protein kina 26.2 34 0.00073 35.2 1.4 44 674-717 122-171 (260)
330 cd05041 PTKc_Fes_like Catalyti 26.0 7E+02 0.015 25.3 12.1 26 673-698 116-141 (251)
331 cd06649 PKc_MEK2 Catalytic dom 25.8 6.6E+02 0.014 27.2 11.6 24 674-697 128-151 (331)
332 cd05086 PTKc_Aatyk2 Catalytic 25.4 1.8E+02 0.004 30.3 6.8 25 674-698 123-147 (268)
333 cd05619 STKc_nPKC_theta Cataly 25.4 1.4E+02 0.003 32.4 6.1 25 674-698 120-144 (316)
334 cd06654 STKc_PAK1 Catalytic do 25.4 8.3E+02 0.018 25.9 12.9 26 674-699 140-165 (296)
335 PF01163 RIO1: RIO1 family; I 25.3 51 0.0011 33.9 2.5 83 599-701 70-157 (188)
336 KOG2171 Karyopherin (importin) 24.9 6.2E+02 0.014 32.9 11.9 32 366-397 442-477 (1075)
337 cd07847 STKc_CDKL1_4 Catalytic 24.6 3.9E+02 0.0085 27.8 9.2 26 674-699 124-149 (286)
338 cd07863 STKc_CDK4 Catalytic do 24.5 1E+02 0.0023 32.3 4.8 25 674-698 132-156 (288)
339 cd05611 STKc_Rim15_like Cataly 24.2 7.8E+02 0.017 25.1 13.4 26 673-698 120-145 (260)
340 KOG0592 3-phosphoinositide-dep 24.1 48 0.001 39.4 2.2 34 666-699 186-225 (604)
341 cd05047 PTKc_Tie Catalytic dom 24.0 8.1E+02 0.018 25.3 14.1 26 674-699 136-161 (270)
342 cd07875 STKc_JNK1 Catalytic do 23.9 1E+02 0.0022 34.2 4.7 25 674-698 150-174 (364)
343 cd06627 STKc_Cdc7_like Catalyt 23.8 7.6E+02 0.016 24.8 13.3 27 673-699 122-148 (254)
344 cd06632 STKc_MEKK1_plant Catal 23.7 7.7E+02 0.017 24.9 13.4 25 674-698 126-150 (258)
345 cd05113 PTKc_Btk_Bmx Catalytic 23.6 1.9E+02 0.0041 30.0 6.4 24 674-697 124-147 (256)
346 PHA03212 serine/threonine kina 23.6 1.3E+02 0.0029 34.0 5.7 44 654-697 184-229 (391)
347 TIGR02721 ycfN_thiK thiamine k 23.5 59 0.0013 34.3 2.6 32 670-702 147-178 (256)
348 PF01633 Choline_kinase: Choli 23.3 51 0.0011 33.8 2.1 29 669-697 143-172 (211)
349 cd05061 PTKc_InsR Catalytic do 22.7 2.2E+02 0.0048 30.1 6.9 24 674-697 143-166 (288)
350 PF13646 HEAT_2: HEAT repeats; 22.6 1.1E+02 0.0023 26.3 3.7 30 368-400 12-41 (88)
351 KOG0610 Putative serine/threon 22.6 70 0.0015 37.0 3.0 88 596-700 137-229 (459)
352 KOG1013 Synaptic vesicle prote 22.5 84 0.0018 35.2 3.5 77 50-128 251-327 (362)
353 PF12755 Vac14_Fab1_bd: Vacuol 22.4 98 0.0021 28.4 3.5 32 369-400 40-74 (97)
354 TIGR01767 MTRK 5-methylthiorib 22.3 3.4E+02 0.0074 31.1 8.4 28 670-698 193-220 (370)
355 KOG4158 BRPK/PTEN-induced prot 22.0 81 0.0017 36.5 3.3 30 674-703 365-398 (598)
356 cd05152 MPH2' Macrolide 2'-Pho 22.0 64 0.0014 35.0 2.6 30 669-698 185-215 (276)
357 cd05094 PTKc_TrkC Catalytic do 22.0 2.1E+02 0.0046 30.2 6.6 25 674-698 147-171 (291)
358 cd05092 PTKc_TrkA Catalytic do 22.0 9.1E+02 0.02 25.1 12.2 24 674-697 146-169 (280)
359 COG3642 Mn2+-dependent serine/ 22.0 1.9E+02 0.0041 30.3 5.7 126 598-752 60-190 (204)
360 cd06644 STKc_STK10_LOK Catalyt 21.9 1.4E+02 0.0031 31.5 5.2 25 674-698 134-158 (292)
361 cd05150 APH Aminoglycoside 3'- 21.9 70 0.0015 33.4 2.8 28 670-697 164-191 (244)
362 cd07862 STKc_CDK6 Catalytic do 21.9 47 0.001 35.1 1.5 45 653-697 111-157 (290)
363 KOG0984 Mitogen-activated prot 21.8 70 0.0015 34.0 2.6 43 674-716 173-225 (282)
364 PHA03209 serine/threonine kina 21.7 1.8E+02 0.004 32.2 6.2 44 654-697 159-204 (357)
365 KOG0696 Serine/threonine prote 21.7 59 0.0013 37.5 2.2 24 674-697 474-497 (683)
366 PLN03225 Serine/threonine-prot 21.5 2.4E+02 0.0052 34.0 7.5 83 613-697 213-303 (566)
367 cd05095 PTKc_DDR2 Catalytic do 21.5 2.4E+02 0.0052 29.9 6.9 24 674-697 154-177 (296)
368 cd06640 STKc_MST4 Catalytic do 21.4 58 0.0012 34.3 2.0 24 674-697 125-148 (277)
369 PHA03207 serine/threonine kina 21.3 1.2E+02 0.0027 34.1 4.8 24 674-697 209-232 (392)
370 TIGR02906 spore_CotS spore coa 21.2 69 0.0015 34.6 2.6 28 669-697 187-214 (313)
371 cd07848 STKc_CDKL5 Catalytic d 21.1 1.5E+02 0.0032 31.2 5.1 46 653-698 101-148 (287)
372 cd05060 PTKc_Syk_like Catalyti 21.1 8.9E+02 0.019 24.7 12.5 24 674-697 119-142 (257)
373 COG5096 Vesicle coat complex, 21.0 1.5E+02 0.0032 37.0 5.6 80 323-403 54-140 (757)
374 PF10707 YrbL-PhoP_reg: PhoP r 21.0 2.4E+02 0.0051 29.4 6.4 75 600-694 81-166 (199)
375 PLN00034 mitogen-activated pro 21.0 49 0.0011 36.5 1.4 24 674-697 192-215 (353)
376 cd07853 STKc_NLK Catalytic dom 21.0 1.4E+02 0.003 33.3 5.0 46 653-698 104-151 (372)
377 KOG1235 Predicted unusual prot 20.9 2.8E+02 0.0061 33.4 7.7 26 674-699 325-354 (538)
378 KOG1242 Protein containing ada 20.8 6.9E+02 0.015 30.3 10.7 108 334-441 267-409 (569)
379 cd05589 STKc_PKN Catalytic dom 20.7 1.3E+02 0.0027 32.8 4.6 28 671-698 120-149 (324)
380 cd05612 STKc_PRKX_like Catalyt 20.7 60 0.0013 34.7 2.0 44 674-717 125-171 (291)
381 cd00180 PKc Catalytic domain o 20.7 7.3E+02 0.016 23.5 16.3 28 671-698 113-141 (215)
382 cd07878 STKc_p38beta_MAPK11 Ca 20.6 1.5E+02 0.0032 32.4 5.1 46 654-699 120-167 (343)
383 cd07877 STKc_p38alpha_MAPK14 C 20.5 4.8E+02 0.01 28.6 9.2 49 669-717 137-190 (345)
384 smart00220 S_TKc Serine/Threon 20.5 8.2E+02 0.018 24.0 11.0 28 673-700 110-137 (244)
385 cd05632 STKc_GRK5 Catalytic do 20.3 1E+03 0.022 25.0 13.4 45 654-698 104-150 (285)
386 cd05089 PTKc_Tie1 Catalytic do 20.2 1E+03 0.022 25.1 13.6 26 674-699 143-168 (297)
387 PTZ00263 protein kinase A cata 20.2 60 0.0013 35.5 1.9 46 673-718 141-189 (329)
No 1
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-201 Score=1649.11 Aligned_cols=794 Identities=54% Similarity=0.894 Sum_probs=744.6
Q ss_pred CCCCeEEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCC
Q 003462 1 MSGNEFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMG 80 (818)
Q Consensus 1 ~~~~~~~~~~s~~~~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~ 80 (818)
|+-+.|+||+||||+.||++||++|||..+ +.+|.+.. .++++.+.+++||+||+|..|+|.+.|+.|+|++|+
T Consensus 1 M~~~~f~f~~Scdl~~~v~vKi~~leg~~~-~~~p~~~~-----~~l~~e~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~ 74 (843)
T KOG0906|consen 1 MGAEKFSFCYSCDLDINVQVKIGSLEGKRP-LLNPMLKL-----IGLFQETSSDLYVTCQVFAEGKPFALPVRTSYKAFS 74 (843)
T ss_pred CCcceeEEEeeccCCcceEEEEEeeccccc-ccChHHHH-----HhhhcccchhhhheeeeeccCCcccCCccccccccC
Confidence 788999999999999999999999999988 56888776 889999999999999999999999999999999999
Q ss_pred CCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecccccccccceeEEeecCCCCCCCCCCCCCCC
Q 003462 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGK 160 (818)
Q Consensus 81 ~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp~~~~d~~~~~~~p~~ 160 (818)
+.++|||||+|||+|+||+++|+|++|||++++++...+||+++.+||+++|.||+|.++|.+|+++++||+.+++.+
T Consensus 75 ~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~k~~~lk~G~~~l~~~~~~e~d~~~pt~~~-- 152 (843)
T KOG0906|consen 75 KRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFGKYGMLKQGMQDLKLWPSVEADGSVPTSSS-- 152 (843)
T ss_pred CccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeecccchHhhhhhhccccccccCCCccCCCcc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999886522
Q ss_pred CCCCchhhHHHHHHHHhhhhcccccccchhhhhhHHHHHHHHhhhhccCCC--CceEEEEEeCCCCceeEeecCCCCCCC
Q 003462 161 VPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGN--SYLYLVVDFGRLEHRVVFQDSGANFLL 238 (818)
Q Consensus 161 ~~~~~~~~~~rl~~l~~~~~~g~~~~~~wld~~~~~~i~~~~~~~~~~~~~--~~~~L~Iefp~f~~pVvy~~~~~~~~~ 238 (818)
..++||+||+|+++||++|++++|+|||++||++|++|++. .+..+ +-.++.|+|-. .+||+|.+.. ..
T Consensus 153 ---~~~~ei~rl~kl~~k~~~G~v~~v~WLD~~t~~~i~~i~~~--~k~~Sm~~l~~v~id~~~-~~~v~~~~~~---~~ 223 (843)
T KOG0906|consen 153 ---TSEDEINRLAKLLNKYRQGHVVSVDWLDRLTFRKIEMINES--WKHSSMLELPCVKIDFKE-YGPVYYEKSM---DV 223 (843)
T ss_pred ---chhhHHHHHHHHHHHHhcCCCccCcccchhhhhhhHhhhhc--ccccceeEEeEEEeeccc-ceeeEEecCc---cc
Confidence 37899999999999999999999999999999999999733 33333 22355566554 6788888761 12
Q ss_pred CCCccCCCcceeecCCCCCCCCcchHHHHHHHhhhccCCcccCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHh
Q 003462 239 PAPITSTNELVIVWDPEVGKINPSEHKQLKLARSLTRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFS 318 (818)
Q Consensus 239 ~~~~~~~~~~~~~~d~e~~~~n~~e~k~~~l~rs~~~~~~d~d~kp~~~~~~~l~~i~~~~p~~~L~~~ek~llW~~R~~ 318 (818)
.+|+.....+++++|||+..+||+|.||++|+||+|+|++|||+||+.+.||+|+.|++|||+++||-|||+++||||||
T Consensus 224 ~~p~~~~~~~v~v~Dpel~l~~p~E~Kh~~l~Rs~r~g~~drdlKP~~~~rd~L~~Iv~yPps~~lt~eerdlvWkfR~y 303 (843)
T KOG0906|consen 224 STPINNGVEIVSVADPELLLESPAEVKHRRLARSLRNGPLDRDLKPNKKARDRLETIVNYPPSQVLTREERDLVWKFRYY 303 (843)
T ss_pred ccccCCCceEEEecCcccccCChHHHHHHHHHHHhhcCccccccCcchHHHHHHHHHhcCCCccccchhhhhhhhhhhHH
Confidence 34555667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 003462 319 LMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQA 398 (818)
Q Consensus 319 l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~~~~~~aLeLL~~~f~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQa 398 (818)
|+++++||+|||+||+|.+++|++||++||.+|++|+++|||||||+.|.++.||+|||++|++|+|++|++||+|||||
T Consensus 304 L~~~kKALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss~f~~~sVrayavsrl~~a~deelllYL~qlvqa 383 (843)
T KOG0906|consen 304 LTNNKKALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSSYFTHPSVRAYAVSRLKGADDEELLLYLLQLVQA 383 (843)
T ss_pred HhhCHHHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccccccCHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhccc----c----------c-------------------------------hhhHHHHHHHHhhcCchhhhHHHhhhhh
Q 003462 399 LRFER----S----------D-------------------------------KSRLSQFLVQRSSHNIELASFLRWYVSV 433 (818)
Q Consensus 399 LkyE~----~----------~-------------------------------~s~L~~fLi~ra~~n~~i~~~l~W~L~~ 433 (818)
||||. . . .|+||+|||+||+.|+++|++||||+++
T Consensus 384 l~ye~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~ 463 (843)
T KOG0906|consen 384 LKYENGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKV 463 (843)
T ss_pred HHHHhhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEE
Confidence 99997 1 1 2479999999999999999999999999
Q ss_pred hccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhhh
Q 003462 434 EFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLL 513 (818)
Q Consensus 434 e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~ 513 (818)
|++|..+.+||..++..+++.+.+ . ..+..++..|..|+.|++.|..|++.+++.++++.+|+++|+.+|++..
T Consensus 464 e~Ed~~~~kry~si~~~f~~~l~K----~--~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e~L~~lL~~~~ 537 (843)
T KOG0906|consen 464 EIEDTPYSKRYLSIMSSFLEALSK----R--PDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIERLRGLLGDHK 537 (843)
T ss_pred EecCChHHHHHHHHHHHHHHHhcc----C--cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHhccc
Confidence 999999888887766666666553 1 2233688999999999999999999999999999999999999998744
Q ss_pred -cccccCCCCcccCCCCcEEEEEEecCcceeeccccceEEEEEEeCCCC-eEEEEEEeCCCcchhHHHHHHHHHHHHHHh
Q 003462 514 -SELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPLRLTFRTASGG-TCKMIFKKGDDIRQDQLVVQMVSLMDRLLK 591 (818)
Q Consensus 514 -~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~-~~~~i~K~gDDLRqD~lvlQli~lmd~ll~ 591 (818)
.++..+ .++++|++|++.|+||+|+.+++|+|++.|++|+|++.+|. .|++|||+||||||||+|+|++++||++++
T Consensus 538 ~~~l~~~-~~i~lpldp~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~GDDLrQDqlV~Qii~lMd~LLk 616 (843)
T KOG0906|consen 538 HMNLLDV-RLIALPLDPDVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKGDDLRQDQLVLQIIRLMDRLLK 616 (843)
T ss_pred ccccccc-eeeccCCCCCceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecCcchhHHHHHHHHHHHHHHHhc
Confidence 234445 48999999999999999999999999999999999999988 999999999999999999999999999999
Q ss_pred hcCCCccccccEEEEeeCCCCeeeeecCccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHh
Q 003462 592 LENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYIL 671 (818)
Q Consensus 592 ~~~ldL~l~~Y~Vlp~~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiL 671 (818)
++++||+++||+|+|||+..|+||+||+.+++.|+.++++|..|+++.+|++++++|+++++++||++|||||||+||||
T Consensus 617 kenlDLkLtpYkVLatg~~eG~vefI~s~~la~Ils~~~~I~~ylke~~p~e~ap~gi~~~v~dnfVkScaGYsVitYIL 696 (843)
T KOG0906|consen 617 KENLDLKLTPYKVLATGPKEGFVEFIPSKPLARILSEYHSILMYLKEDRPDENAPFGISPEVMDNFVKSCAGYSVITYIL 696 (843)
T ss_pred cccccccceeeEEeccCCCcccEEeecCCcHHHHHHHHHHHHHHHHhhCCCcCCCCCCChhHHHHHHHhhccceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceeEcCCCCEEEEeeccccCCCCCCCCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHH
Q 003462 672 GIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNL 751 (818)
Q Consensus 672 GIGDRH~dNIli~~~G~lfHIDFG~ilg~~p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l 751 (818)
||||||+||+|++++||+||||||||||+|||||||||+|+++||++|||.+++.|++|+.+|+.||.+||+++++|+||
T Consensus 697 GvGDRhldNLllT~dGk~FHiDFgyIlGRDPKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnL 776 (843)
T KOG0906|consen 697 GVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNL 776 (843)
T ss_pred cccCCCcCceEEccCCcEEEEeeeeeccCCCCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCCCCcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhhcC
Q 003462 752 FHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQYWR 818 (818)
Q Consensus 752 ~~lm~~~~ip~~~~~~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq~~r 818 (818)
|++|++++||+++.+++++|.++++||+++||||+|.+||+++|++|++|++|.+.|.||+||||||
T Consensus 777 f~LM~~~~IPDia~dp~k~I~kvqeRfrLdmSde~A~~~fq~lI~~SV~AL~~~v~d~ih~~aqy~R 843 (843)
T KOG0906|consen 777 FSLMADANIPDIAFDPNKAILKVQERFRLDMSDEAATKHFQKLINESVNALFPQVVDLIHRLAQYWR 843 (843)
T ss_pred HHHHhcCCCCceeeCcchhhHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-148 Score=1257.33 Aligned_cols=690 Identities=30% Similarity=0.524 Sum_probs=592.2
Q ss_pred CCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEe
Q 003462 12 CDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITL 91 (818)
Q Consensus 12 ~~~~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~f 91 (818)
=|++.|++|||.+..+ ..++......++|+++||||+++||..++|+.+++.+...||+|+.|
T Consensus 339 Wd~~~~frI~l~~is~-----------------~n~~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leF 401 (1076)
T KOG0904|consen 339 WDLDRPFRIKLVGISK-----------------VNLPETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEF 401 (1076)
T ss_pred HcCCCceEEEEeeccc-----------------cCCCcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEe
Confidence 3778888888887776 23333445889999999999999999999999999999999999999
Q ss_pred cccccCcCccCceEEEEEeecC----------------CCCceeEeEEEEeeecccccccccceeEEeecCCCCCCCCCC
Q 003462 92 STKYRDLTAHSQLALTVWDVSC----------------GKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPT 155 (818)
Q Consensus 92 pI~~~dLPr~a~L~~ti~~~~~----------------~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp~~~~d~~~~~ 155 (818)
+|+++||||+|+|||.||++.. ++++.|+||+|+.|||+++.||+|.+.|++||....+ .
T Consensus 402 DI~i~DLPr~ArLc~~i~~v~~~~~s~~~s~~~~~kk~k~~~~plaWvN~~lfD~kd~LrtG~~~Lh~W~~~p~~-~--- 477 (1076)
T KOG0904|consen 402 DIYIKDLPRMARLCLAIYAVKAKAKSKKNSAESTKKKSKKEHCPLAWVNLMLFDHKDQLRTGEYVLHMWPSVPDE-L--- 477 (1076)
T ss_pred eeecCCCChhhhheeeeeEeechhccccccchhhhhccccccCceEEEeeeeeechhhhhcCceEEEecCCCCch-h---
Confidence 9999999999999999999841 2345699999999999999999999999999963322 1
Q ss_pred CCCCCCCCCchhhHHHHHHHHhhhhcccccccchhhhhhHHHHHHHHhhhhccCCCCceEEEEEeCCCC-ceeEeecCCC
Q 003462 156 STPGKVPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGNSYLYLVVDFGRLE-HRVVFQDSGA 234 (818)
Q Consensus 156 ~~p~~~~~~~~~~~~rl~~l~~~~~~g~~~~~~wld~~~~~~i~~~~~~~~~~~~~~~~~L~Iefp~f~-~pVvy~~~~~ 234 (818)
+.+++ ..|.+.. ++++.+++.+.|.||... +||.|+..+.
T Consensus 478 -----------------~e~l~--p~Gt~~~--------------------Np~ke~~~~~~i~f~~~~~~~~~yp~~~k 518 (1076)
T KOG0904|consen 478 -----------------GELLN--PKGTVRT--------------------NPNKENAASLSIKFPEYCPHPVYYPKLEK 518 (1076)
T ss_pred -----------------hhhcC--CCCcccC--------------------CCCcccchheeeeccccCCCCccCCchhh
Confidence 11122 1233222 344556788999999985 8888876421
Q ss_pred CCCCCCCccCCCcceeecCCCCCCCCcchHHHHHHHhhhccCCcccCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHH
Q 003462 235 NFLLPAPITSTNELVIVWDPEVGKINPSEHKQLKLARSLTRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWK 314 (818)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~d~e~~~~n~~e~k~~~l~rs~~~~~~d~d~kp~~~~~~~l~~i~~~~p~~~L~~~ek~llW~ 314 (818)
+.++... -++ ....|++.--..+.+++|++|+..+|+.+|+++||++||.
T Consensus 519 ----------------~~~~~~~-----------~~~---~~~~~~~~~~~e~~~kqLk~i~~~d~l~el~e~ekd~lW~ 568 (1076)
T KOG0904|consen 519 ----------------ILEPAAD-----------RER---VNRLDRESCGREKLRKQLKEILARDPLSELTEQEKDLLWH 568 (1076)
T ss_pred ----------------ccchhhh-----------hhh---hccchhhhcccchhHHHHHHHHhcCCcccchHHHHHHHHH
Confidence 1111110 011 1122333333346789999999999999999999999999
Q ss_pred hhHhhhc-cchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHH
Q 003462 315 FRFSLMS-EKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLL 393 (818)
Q Consensus 315 ~R~~l~~-~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~~~~~~aLeLL~~~f~~~~VR~yAv~~L~~~~d~~l~~yL~ 393 (818)
+|+++.. .|++|||+|.||.|+++++|+|++.||..|++++|+.||||||.+|+|+.||+|||+||++++||+|.+||+
T Consensus 569 ~R~~~~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~l~v~~aleLLd~nypD~~VR~fAV~~L~~Lsdd~l~~YLL 648 (1076)
T KOG0904|consen 569 LRHEILKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPPLSVELALELLDCNYPDPNVRAFAVRCLEQLSDDDLLQYLL 648 (1076)
T ss_pred HHHHHHHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCCCCHHHHHHHhcCCCCcHHHHHHHHHHHHhcChhHHHHHHH
Confidence 9999965 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccchhhHHHHHHHHhhcCchhhhHHHhhhhhhccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHH
Q 003462 394 QLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQS 473 (818)
Q Consensus 394 QLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 473 (818)
|||||||||+|+||.|++||++||++|.+|||+|||+|++|++.+....|| +.+++++++ |+. .+.+.
T Consensus 649 qLVQalKyEpylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~~~~~Rf----gllLEaYlR----Gc~----~hlk~ 716 (1076)
T KOG0904|consen 649 QLVQALKYEPYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQPSVQQRF----GLLLEAYLR----GCT----HHLKV 716 (1076)
T ss_pred HHHHHHhccchhHhHHHHHHHHHHhhccccchhhhhhHHHHhccHHHHHHH----HHHHHHHHh----ccH----HHHHH
Confidence 999999999999999999999999999999999999999999999877776 667787774 332 67889
Q ss_pred HHHHHHHHHHHHHHHHhhccC--CCChhHHHHHHHHHHHhh--hcccccCCCCcccCCCCcEEEEEEecCcceeeccccc
Q 003462 474 LVRQTELTAQLCSIMRDVGNV--RGNTQKKIEKLRQLLSGL--LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALH 549 (818)
Q Consensus 474 l~~Q~~~~~~L~~i~~~vk~~--~~~~~~k~e~L~~~L~~~--~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~ 549 (818)
|.+|++++++|.+++..+|.. +..+++-++.|+..+++. +..+ +.+..|+||+.++.++.+++|+||+||++
T Consensus 717 l~kQve~l~kLk~lt~~iK~~~~K~~~~~~~~~l~~~lr~~~~~~~l----q~l~sPLdP~~~lgel~iekckvM~Skkr 792 (1076)
T KOG0904|consen 717 LTKQVEALEKLKKLTDLIKLSAEKEDVSQVKEQLKLCLRQLANSEAL----QNLQSPLDPSLKLGELIIEKCKVMDSKKR 792 (1076)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHHHHHHHhHHHHHHH----HhccCCCChhhhhcchhhhhhhhhhccCC
Confidence 999999999999999999942 222333356666666542 2333 36789999999999999999999999999
Q ss_pred eEEEEEEeCCC---CeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccHHHH
Q 003462 550 PLRLTFRTASG---GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQI 625 (818)
Q Consensus 550 P~~l~f~~~dg---~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I 625 (818)
|+||.|.+.+- ....+|||+|||||||||++||+++||.||+.+|+|++|.||.|+|||...||||+|+ +.|+++|
T Consensus 793 PLwl~~~Np~~~s~~~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~glDlrm~PYgcls~Gd~iGlIEVV~~s~TIa~I 872 (1076)
T KOG0904|consen 793 PLWLVFENPDAGSNLSVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEGLDLRMLPYGCLSTGDRIGLIEVVRNSETIANI 872 (1076)
T ss_pred ceEEEecCCCcccCCceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcCCCeeccccccccccceeeeEEEecCchhhhhh
Confidence 99999987652 2678999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred Hhhh-----------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEee
Q 003462 626 LSEH-----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDF 694 (818)
Q Consensus 626 ~~~~-----------~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDF 694 (818)
+.+. ..+.+|++.+||.+.. ..+|.+.|+.||||||||||||||||||+|||||.+||++|||||
T Consensus 873 Q~~~g~~~at~afn~~~L~~WLKekNp~e~k----ld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvke~GqlFHIDF 948 (1076)
T KOG0904|consen 873 QLNTGNMAATAAFNKDALLNWLKEKNPGEDK----LDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVKETGQLFHIDF 948 (1076)
T ss_pred hhccccceeeccCCHHHHHHHHhhcCchHHH----HHHHHHHHHHhhccceeeeeeecccccccCceEEeccCcEEEEEh
Confidence 9763 3689999999987642 257899999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCC-----CCCccccHHHHHHhC--C-CCccc-cchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcC
Q 003462 695 GYILGRDPKPF-----PPPMKLCKEMVEAMG--G-AESQY-YTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIAS 765 (818)
Q Consensus 695 G~ilg~~p~pf-----~~PFrLT~~mv~~mG--g-~~s~~-~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~ 765 (818)
|||||+.+..| .|||.||.+|+.+|+ + .+++. |++|+++|++||.+||+|+++|++||++|+.+|+|++++
T Consensus 949 GHiLGh~KsKlGi~RERvPFvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELss 1028 (1076)
T KOG0904|consen 949 GHILGHFKSKLGINRERVPFVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELSS 1028 (1076)
T ss_pred hhhhccchhhcCcccccCceEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCcccc
Confidence 99999997654 589999999999995 2 23344 999999999999999999999999999999999999998
Q ss_pred CchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-chhHHHHHHHHHH
Q 003462 766 DPEKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRW 813 (818)
Q Consensus 766 ~~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~-s~~t~~~d~~H~~ 813 (818)
..| |+|+++.|.++.|||||.+||...+++|++ +|.|+++..+|++
T Consensus 1029 ~~D--i~ylrdtL~l~ktEEeA~k~F~~k~~eA~~~sWtTk~NW~~H~v 1075 (1076)
T KOG0904|consen 1029 KKD--IDYLRDTLALGKTEEEALKYFRDKFEEALRGSWTTKVNWLFHNV 1075 (1076)
T ss_pred HHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhcCceeeehhhhhhc
Confidence 774 889999999999999999999999999996 6889999999985
No 3
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-133 Score=1152.72 Aligned_cols=661 Identities=31% Similarity=0.497 Sum_probs=581.4
Q ss_pred CCCCceEEEEEEEeCCcccccceeccccc----CCCCccccccEEecccccCcCccCceEEEEEeecCCC----------
Q 003462 50 ERRPELYVECALYIDGAPFGLPMRTRLES----MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK---------- 115 (818)
Q Consensus 50 ~~~~~l~V~~~l~~~~~~l~~p~~T~~~~----~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~---------- 115 (818)
+..+|+|..|+|+|||+.|+.|++|.... |..+..|++||+||+.+|+|||+|+|++|+|++....
T Consensus 653 s~yedfyl~~~l~hg~k~l~~p~~t~k~~~~~~~F~ri~~d~~i~Fp~~i~~lPREt~L~~tL~G~~~~s~gan~d~n~e 732 (1639)
T KOG0905|consen 653 SQYEDFYLSCSLSHGTKDLDKPNQTPKTITSKHFFPRIPWDLYIKFPRQICQLPRETRLTVTLFGIVRASAGANADQNKE 732 (1639)
T ss_pred hhhhhheEEEeeecCceeccccccccccccccccccccchhhhhcchHHHhhCChhheEEEEEeeeecCCCCCCchhccc
Confidence 45689999999999999999999886544 4455789999999999999999999999999985321
Q ss_pred --CceeEeEEEEeeecccccccccceeEEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhcccccccchhhhh
Q 003462 116 --DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQIQRVDWLDRL 193 (818)
Q Consensus 116 --~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp~~~~d~~~~~~~p~~~~~~~~~~~~rl~~l~~~~~~g~~~~~~wld~~ 193 (818)
....+||++++|||++..+++|+.-|.+||........+..+++ .
T Consensus 733 rr~~~~LGw~slpLfdf~~~m~cG~~ll~lw~~~~~~~l~~~~~~~---~------------------------------ 779 (1639)
T KOG0905|consen 733 RRVPEALGWCSLPLFDFRRFMTCGPLLLPLWPSKKQNMLKPFGAYP---Y------------------------------ 779 (1639)
T ss_pred ccchhhhheeeccccchhhhhcccchhhccccCCCCcCCCCCCCCC---c------------------------------
Confidence 12479999999999999999999999999976654332222111 0
Q ss_pred hHHHHHHHHhhhhccCCCCceEEEEEeCCCCceeEeecCCCCCCCCCCccCCCcceeecCCCCCCCCcchHHHHHHHhhh
Q 003462 194 TFKALEKIKEQENFRNGNSYLYLVVDFGRLEHRVVFQDSGANFLLPAPITSTNELVIVWDPEVGKINPSEHKQLKLARSL 273 (818)
Q Consensus 194 ~~~~i~~~~~~~~~~~~~~~~~L~Iefp~f~~pVvy~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~n~~e~k~~~l~rs~ 273 (818)
...+.+.|.|+||...+.|.|+++..+- +...-|| +
T Consensus 780 ---------------~qp~~~iLqidfp~~~~ei~fp~~~~d~----------~~~p~~d---------------f---- 815 (1639)
T KOG0905|consen 780 ---------------HQPDDPILQIDFPIWGFEIYFPNPQEDR----------QCIPHYD---------------F---- 815 (1639)
T ss_pred ---------------cCCCCceEEEecCCCCceEecCCccccc----------ccccccc---------------h----
Confidence 0123589999999999999999874321 1111111 1
Q ss_pred ccCCcccCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccc-cCCCHHHHHHHHHHhcCCC
Q 003462 274 TRGIIDRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSV-EWSDVQEAKQALELMGRWE 352 (818)
Q Consensus 274 ~~~~~d~d~kp~~~~~~~l~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV-~W~~~~e~~~a~~lL~~W~ 352 (818)
+ .+..+..+.|..|+.+..+..|+.|+|+++|.+|+||.++|.|||++|.|. +|+... +.+.|+||++|+
T Consensus 816 --~------tl~~e~q~~Lldl~qkq~~~~ls~edk~~lWekR~yc~~~p~aLPlVL~Sap~W~~~~-l~~~y~lL~~Wa 886 (1639)
T KOG0905|consen 816 --A------TLDIETQEKLLDLIQKQSTLTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDWGN-LMDVYQLLHQWA 886 (1639)
T ss_pred --h------hhhHHHHHHHHHHHhhccccccchhhHHHHHHHhhhhcCCCchhHHHHhcCCCCchhh-HHHHHHHHHhcc
Confidence 1 234567888999999999999999999999999999999999999999877 677765 667799999999
Q ss_pred CCCHhhHhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcCchhhhHHHhhhh
Q 003462 353 MIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVS 432 (818)
Q Consensus 353 ~~~~~~aLeLL~~~f~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~ 432 (818)
++.|.+|||||.++|+|.+||+.||++|.+++||||..||||||||||||-|.+|+|++||++||+.|.+++|+|||.|+
T Consensus 887 ~l~Pl~ALelL~~kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk 966 (1639)
T KOG0905|consen 887 PLRPLIALELLLPKFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQFAHELYWLLK 966 (1639)
T ss_pred ccCHHHHHHhhcccCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhh
Q 003462 433 VEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGL 512 (818)
Q Consensus 433 ~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~ 512 (818)
--++|.++. .+|+.++.+++.. +|..+++++.+|.++++.|.+|++.||+.+++. +...|+.-|+.+
T Consensus 967 ~~l~d~qfs----~rYq~ll~aLl~~-------~gk~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~--Rq~vL~~~l~~v 1033 (1639)
T KOG0905|consen 967 DALDDSQFS----LRYQNLLAALLDC-------CGKNLREEFKKQHKLVNELGSIAEDVRSASGSA--RQHVLRTGLGRV 1033 (1639)
T ss_pred hccccceee----hHHHHHHHHHHHH-------hCHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--HHHHHHHhHHHH
Confidence 999987754 4468888888752 234789999999999999999999999987753 556677777665
Q ss_pred hcccccCCCCcccCCCCcEEEEEEecCcceeeccccceEEEEEEe--CCCCeEEEEEEeCCCcchhHHHHHHHHHHHHHH
Q 003462 513 LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPLRLTFRT--ASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLL 590 (818)
Q Consensus 513 ~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~--~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll 590 (818)
.+.+..- ..++||+.|+..++||.++.|++|.|+..|++|+|+| .+|+.+++|||+||||||||++||||++||+||
T Consensus 1034 ~~ff~~n-~tcrLPL~Pal~vkGv~i~~CSyFnSNA~PLKitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIW 1112 (1639)
T KOG0905|consen 1034 DSFFLQN-NTCRLPLCPALDVKGVRIRECSYFNSNALPLKITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIW 1112 (1639)
T ss_pred HHHHHhC-CceecccCchheeccccccccccccCCCcceEEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHH
Confidence 5544432 3789999999999999999999999999999999999 559999999999999999999999999999999
Q ss_pred hhcCCCccccccEEEEeeCCCCeeeeec-CccHHHHHhhhh--------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Q 003462 591 KLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHR--------SIISYLQKFHPDEHGPFGITATCLETFIKSC 661 (818)
Q Consensus 591 ~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~~~~--------~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~ 661 (818)
.++|||++|.+|+|+|||.+.||||.|| +.||++|+.++| .|.+||.++||++.+. ++|.+||++||
T Consensus 1113 l~egLDlrMViFrc~stG~~rgMvElVp~a~TLrKIQve~GltGsfkD~pla~WL~KhNp~e~eY----ekA~eNFiySC 1188 (1639)
T KOG0905|consen 1113 LQEGLDLRMVIFRCLSTGYDRGMVELVPNAETLRKIQVEEGLTGSFKDRPLAKWLMKHNPSEFEY----EKAVENFIYSC 1188 (1639)
T ss_pred HhcCCceeEEEEEeecccccccceeecccHHHHHHHHHHhccccccccchHHHHHHhcCCCHHHH----HHHHHHHHHhc
Confidence 9999999999999999999999999999 999999999854 6899999999987542 68999999999
Q ss_pred HHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccccCCCC-----CCCCCCccccHHHHHHh--CCCCccccchHHHHH
Q 003462 662 AGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDP-----KPFPPPMKLCKEMVEAM--GGAESQYYTRFKSYC 734 (818)
Q Consensus 662 Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~~p-----~pf~~PFrLT~~mv~~m--Gg~~s~~~~~F~~~c 734 (818)
|||||+|||||||||||||||++++||+||||||-+||... |.-.+||.+|.+|.+++ |+..+..|+.|.++|
T Consensus 1189 AG~cVaTYVLGIcDRHNDNIMl~~sGHmFHIDFGKFLGhaQMfg~fKRDRaPFVfTSdMayvINgG~kpt~~fq~FVDlC 1268 (1639)
T KOG0905|consen 1189 AGWCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLC 1268 (1639)
T ss_pred ccceeeeEeeecccccCCceEEeccCcEEEEehhhhcchHHHhcccccccCCeEEeccchhhhcCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999652 23358999999999998 456788999999999
Q ss_pred HHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Q 003462 735 CEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWA 814 (818)
Q Consensus 735 ~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~a 814 (818)
|+||+++|||+++++||+.+|+.+|||++++-. +++||++.|+++.||.||..+|.++|++|+++++|++|+++|++|
T Consensus 1269 CrAyNiiRK~t~lllnlL~lM~~agiPeln~i~--dLkYV~~aL~pq~td~eAT~~FTkmIqsSLgs~~tklNffiHnLA 1346 (1639)
T KOG0905|consen 1269 CRAYNIIRKNTNLLLNLLRLMACAGIPELNSIQ--DLKYVYNALRPQDTDAEATVQFTKMIQSSLGSAFTKLNFFIHNLA 1346 (1639)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCccchh--hHHHHHhhcCcccCChhHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999855 489999999999999999999999999999999999999999999
Q ss_pred hh
Q 003462 815 QY 816 (818)
Q Consensus 815 q~ 816 (818)
|+
T Consensus 1347 Qm 1348 (1639)
T KOG0905|consen 1347 QM 1348 (1639)
T ss_pred HH
Confidence 97
No 4
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=100.00 E-value=3.1e-91 Score=765.39 Aligned_cols=346 Identities=66% Similarity=1.104 Sum_probs=334.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceeeccccceE
Q 003462 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (818)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~P~ 551 (818)
+.|.+|.+|+++|.+|++.++..++++++|.+.|++.|++....+..++.+++||+||++.|.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~L~~i~~~~k~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~lP~dp~~~i~~i~~~~~~v~~S~~~P~ 81 (350)
T cd00896 2 QTLSRQIEFVDRLRKLLKELRSSKIDRPKKIEKLKQLLSSIEYELLLDFEPIPLPLDPSIEITGIIPEESSVFKSALMPL 81 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHhccccccccCCCCCcCCCCCCeEEEEEecCceEEeccccCce
Confidence 46999999999999999999998888889999999999886555455667999999999999999999999999999999
Q ss_pred EEEEEeCCC---CeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeecCccHHHHHhh
Q 003462 552 RLTFRTASG---GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQILSE 628 (818)
Q Consensus 552 ~l~f~~~dg---~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~s~tl~~I~~~ 628 (818)
+|+|+++|| +.|.+|||.|||||||++++|++++||.+|+++++|++++||+|+|||+++||||||++.|+++|+++
T Consensus 82 ~l~f~~~dg~~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~ldl~l~~Y~Vip~~~~~GlIE~V~s~tl~~i~~~ 161 (350)
T cd00896 82 KLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKENLDLKLTPYKVLATSPTDGLVEFIPSVTLASILKK 161 (350)
T ss_pred EEEEEeCCCCCCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCCcceEEEecccHHHHHHH
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccccCCCCCCCCCC
Q 003462 629 HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPPP 708 (818)
Q Consensus 629 ~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~~p~pf~~P 708 (818)
++.+.+|++++++++..+.+++.++++||++|||||||+||||||||||+|||||+++||+|||||||+||++|+||++|
T Consensus 162 ~~~l~~~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~~~G~~~HIDFG~ilg~~p~~~~~P 241 (350)
T cd00896 162 YGGILNYLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLTKDGKLFHIDFGYILGRDPKPFPPP 241 (350)
T ss_pred HHHHHHHHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEcCCCCEEEEEhHHhhCCCCCCCCCC
Confidence 99999999999999888777778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchHHHHHHHHHcCCCCCHHHHH
Q 003462 709 MKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACV 788 (818)
Q Consensus 709 FrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~~l~l~lsdeeA~ 788 (818)
||||++|+++|||.+++.|+.|+.+|+.||.+||+|+++|++++++|+++++||++.+++.++.++++||++++||+||.
T Consensus 242 FrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~rf~l~~s~~ea~ 321 (350)
T cd00896 242 MKLCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALDPDKAILKVQEKFRLDLSDEEAI 321 (350)
T ss_pred eeccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccCHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHhhc
Q 003462 789 HFFQDLINESVSALFPQMVETIHRWAQYW 817 (818)
Q Consensus 789 ~~f~~lI~~s~~s~~t~~~d~~H~~aq~~ 817 (818)
++|+++|++|+++++|+++|++|+|||||
T Consensus 322 ~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 322 KHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999
No 5
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=100.00 E-value=1.4e-90 Score=753.85 Aligned_cols=335 Identities=33% Similarity=0.617 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceeeccccceE
Q 003462 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (818)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~P~ 551 (818)
+++.+|++++++|.++++.||+.+. .++.+.|++.|++.. .+..++.+++||+||++.|++|.+++|+||+|+++|+
T Consensus 2 ~~~~~Q~~~~~~L~~i~~~vk~~~~--~~r~~~l~~~L~~~~-~~~~~~~~~~lPldP~~~v~~i~~~~~~v~~S~~~Pl 78 (354)
T cd00895 2 EEFDRQCWLVNVLAKLAQQVREAAP--SARQGILREGLEEVK-QFFSINGSCRLPLSPSLLVKGIVPRDCSYFNSNAVPL 78 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHhhh-hhccCCCCCcCCCCCCeEEEEEEcCceEEecccCCCe
Confidence 5799999999999999999998863 467789999998865 5545667899999999999999999999999999999
Q ss_pred EEEEEeCC--CCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccHHHHHhh
Q 003462 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (818)
Q Consensus 552 ~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~~ 628 (818)
+|+|++.| |..|.+|||.|||||||++++|+|++||+||+++|+|++++||+|+|||+++|+||+|| +.|+++|+++
T Consensus 79 ~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~ 158 (354)
T cd00895 79 KLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEGLDMRMVIFRCFSTGRGRGMVEMIPNAETLRKIQVE 158 (354)
T ss_pred EEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChhhHHHHHHH
Confidence 99999998 88999999999999999999999999999999999999999999999999999999999 8999999986
Q ss_pred hh--------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccccCC
Q 003462 629 HR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGR 700 (818)
Q Consensus 629 ~~--------~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~ 700 (818)
++ +|.+||+++++++.. +.+|++||++|||||||+||||||||||||||||+++||+||||||||||+
T Consensus 159 ~g~~g~~~~~~l~~~l~~~~~~~~~----~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~~~GhlfHIDFG~iLg~ 234 (354)
T cd00895 159 HGVTGSFKDRPLADWLQKHNPTEDE----YEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLKTTGHMFHIDFGRFLGH 234 (354)
T ss_pred hCcCcccccchHHHHHHHhCCChHH----HHHHHHHHHHHHHHHHHHHHHccccccCCCceeEcCCCCEEEEeeHHhcCC
Confidence 54 789999999887543 267999999999999999999999999999999999999999999999998
Q ss_pred CCC-----CCCCCccccHHHHHHhCC--CCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchHHHHH
Q 003462 701 DPK-----PFPPPMKLCKEMVEAMGG--AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILK 773 (818)
Q Consensus 701 ~p~-----pf~~PFrLT~~mv~~mGg--~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~ 773 (818)
+|+ ++++||+||+||+++||| .+|+.|..|+++|++||++||+|+++|++||++|+++||||++..+ ++.+
T Consensus 235 ~~~~g~~~re~~PF~Lt~emv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~~~--~i~~ 312 (354)
T cd00895 235 AQMFGNIKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSDLE--DLKY 312 (354)
T ss_pred CcccCCCCcCCCCccccHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCcch--HHHH
Confidence 863 578999999999999964 5688999999999999999999999999999999999999999754 6899
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003462 774 LQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 815 (818)
Q Consensus 774 l~~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq 815 (818)
+++||++++||+||.+||+++|++|+++++|+++|++|++||
T Consensus 313 l~~rf~l~~se~eA~~~f~~lI~~s~~s~~t~~~~~~H~~aq 354 (354)
T cd00895 313 VYDALRPQDTEADATTYFTRLIESSLGSVATKLNFFIHNLAQ 354 (354)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhhhHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998
No 6
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=2.6e-88 Score=735.88 Aligned_cols=335 Identities=34% Similarity=0.595 Sum_probs=307.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceeeccccce
Q 003462 471 WQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHP 550 (818)
Q Consensus 471 ~~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~P 550 (818)
|++|.+|.++++.|.+++++||..++++. .+.|++.++...+.+. +.+++||+||++.+.++.+++|+||+|+++|
T Consensus 1 r~~l~~Q~~~~~~L~~i~~~vk~~~~~~~--~~~l~~~~~~l~~~~~--~~~~~lPl~p~~~~~~~~~~~c~v~~S~~~P 76 (353)
T cd05176 1 REELEKQTRLVQLLGAVAEKVRQASSSTR--QVVLQEGMERVQSFFQ--KNKCRLPLSPSLVAKELNIKVCSFFSSNAVP 76 (353)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHhhcC--CCCCCCCCCcceeEccEehheeEEecccCCc
Confidence 35799999999999999999998765533 3456666655433332 2479999999999999999999999999999
Q ss_pred EEEEEEeCC--CCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccHHHHHh
Q 003462 551 LRLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILS 627 (818)
Q Consensus 551 ~~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~ 627 (818)
++|+|+++| |+.|++|||.|||||||++++|+|++||++|+++|+||+++||+|+|||+++|+||||| +.|+++|++
T Consensus 77 l~l~f~~~d~~g~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~ 156 (353)
T cd05176 77 LKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQEGLDLRMVIFKCLSTGKDRGMVELVPASETLRKIQV 156 (353)
T ss_pred eEEEEEccCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEcCCCceEEEEeCCcHhHHHHHH
Confidence 999999999 89999999999999999999999999999999999999999999999999999999999 899999998
Q ss_pred hhh--------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccccC
Q 003462 628 EHR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 628 ~~~--------~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
+++ .+.+|++++++++.. +.+|++||++|||||||+||||||||||+|||||+++||+|||||||+||
T Consensus 157 ~~~~~~~~~~~~l~~~l~~~~~~~~~----~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~~~Ghl~HIDFG~ilg 232 (353)
T cd05176 157 EYGVTGSFKDKPLAEWLRKYNPAEEE----YEKASENFIYSCAGCCVATYVLGICDRHNDNIMLRSTGHMFHIDFGKFLG 232 (353)
T ss_pred HhCcCCccccchHHHHHHHhCCChHH----HHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEcCCCCEEEEeeHHhcC
Confidence 753 688999999886543 26799999999999999999999999999999999999999999999999
Q ss_pred CCC-----CCCCCCccccHHHHHHhCCCC--ccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchHHHH
Q 003462 700 RDP-----KPFPPPMKLCKEMVEAMGGAE--SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGIL 772 (818)
Q Consensus 700 ~~p-----~pf~~PFrLT~~mv~~mGg~~--s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~ 772 (818)
++| +++++|||||+||+++|||.+ ++.|+.|+++|++||++||+|+++|++||++|+++||||++..+ ++.
T Consensus 233 ~~~~~g~~~~e~~PFkLT~emv~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~~~--~i~ 310 (353)
T cd05176 233 HAQMFGSFKRDRAPFVLTSDMAYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTGVQ--DLK 310 (353)
T ss_pred CCccccCCCCCCCCeeecHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCCch--HHH
Confidence 886 467899999999999998754 35799999999999999999999999999999999999999766 589
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003462 773 KLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 815 (818)
Q Consensus 773 ~l~~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq 815 (818)
++++||++++||+||..||+++|++|+++++|+++|++|++||
T Consensus 311 ~l~~r~~l~~sd~ea~~~f~~lI~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05176 311 YVYDALQPQTTDAEATIFFTRLIESSLGSVATKFNFFIHNLAQ 353 (353)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHhHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998
No 7
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=100.00 E-value=8.1e-88 Score=735.24 Aligned_cols=335 Identities=32% Similarity=0.557 Sum_probs=308.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceeeccccceE
Q 003462 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (818)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~P~ 551 (818)
++|.+|++++++|.+++++||..++.+ +.+.|++.|++....+. .+.+++||+||++.|++|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~L~~~~~~vk~~~~~~--~~~~l~~~l~~~~~~~~-~~~~~~lPl~P~~~i~~i~~~~~~v~~S~~~Pl 78 (354)
T cd05177 2 KEFSKETKLISILIDAAEKVKTASDTR--RKEVLKREASRLEDFFQ-DVVSCCLPLNPALRVKGIDADACSYFTSNAAPL 78 (354)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcChhH--HHHHHHHHHHHhhhhcc-CCCCCccCCCCCeEEEEEecCccEEehhhcCCC
Confidence 479999999999999999999986543 33458888877433222 235899999999999999999999999999999
Q ss_pred EEEEEeCC--CCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccHHHHHhh
Q 003462 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (818)
Q Consensus 552 ~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~~ 628 (818)
+|+|+++| |+.|++|||.|||||||++++|++++||++|+++|+|++++||+|+|||+++|+||||| +.|+++|+++
T Consensus 79 ~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~ldl~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~ 158 (354)
T cd05177 79 KISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEGLDMQMIIYRCLSTGKTQGLVQMVPDAVTLAKIHRE 158 (354)
T ss_pred EEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCCceEEEEeCChHhHHHHHHh
Confidence 99999999 88999999999999999999999999999999999999999999999999999999999 8999999987
Q ss_pred h--------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccccCC
Q 003462 629 H--------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGR 700 (818)
Q Consensus 629 ~--------~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~ 700 (818)
. .++.+|++.+++++.. +.+|++||++|||||||+||||||||||||||||+++||+|||||||+||+
T Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~----~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~~~G~~~HIDFG~ilg~ 234 (354)
T cd05177 159 SGLIGPLKENTIEKWFHMHNKLKED----YDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLTHSGHMFHIDFGKFLGH 234 (354)
T ss_pred hCCCcccchhhHHHHHHHhCCChHH----HHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEcCCCCEEEEehHHhcCC
Confidence 4 4789999998877543 267899999999999999999999999999999999999999999999999
Q ss_pred CCC-----CCCCCccccHHHHHH--hCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchHHHHH
Q 003462 701 DPK-----PFPPPMKLCKEMVEA--MGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILK 773 (818)
Q Consensus 701 ~p~-----pf~~PFrLT~~mv~~--mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~ 773 (818)
+|+ ++++|||||++|+++ |||.+++.|+.|+++|++||++||+|+++|+++|++|++++|||++..+ ++.+
T Consensus 235 ~~~~~~~~~E~~PF~LT~emv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~~--~i~~ 312 (354)
T cd05177 235 AQTFGSIKRDRAPFIFTSEMEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDIQ--DLKY 312 (354)
T ss_pred CccccCCCcCCCCeeccHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcch--HHHH
Confidence 874 578999999999865 5899999999999999999999999999999999999999999999765 4899
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003462 774 LQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 815 (818)
Q Consensus 774 l~~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq 815 (818)
+++||++++||+||.+||+++|++|++++.|++++++|++||
T Consensus 313 l~~~~~l~~sd~eA~~~f~~lI~~s~~~~~~~~~~~~H~~aq 354 (354)
T cd05177 313 VYNNLRPQDTDLEATSYFTKKIKESLECFPVKLNNLIHTLAQ 354 (354)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998
No 8
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=100.00 E-value=1.5e-86 Score=728.11 Aligned_cols=336 Identities=32% Similarity=0.575 Sum_probs=310.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC---CChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceeecccc
Q 003462 472 QSLVRQTELTAQLCSIMRDVGNVR---GNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSAL 548 (818)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~---~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~ 548 (818)
+.|.+|++++++|.++++.||..+ +++++|.+.|++.|++... .++++++++|+||++.|.+|.+++|+||+|++
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~ik~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~lPl~P~~~v~~i~~~~~~v~~Sk~ 79 (366)
T cd05165 2 KDLSKQVEALNKLKKLTDIIKSLSAKYDVKEQVKSQLEQVLRQLAN--LDLLQSFQSPLNPSLKLGELRIEKCKVMDSKK 79 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHcccch--hcccccCCCCCCCceeEeeeecCceEEehhhc
Confidence 469999999999999999999876 5677889999999977432 23446899999999999999999999999999
Q ss_pred ceEEEEEEeCC-----CCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccH
Q 003462 549 HPLRLTFRTAS-----GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSL 622 (818)
Q Consensus 549 ~P~~l~f~~~d-----g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl 622 (818)
+|++|+|+++| |+.|.+|||.|||||||++++|+|++||.||+++++|++++||+|+|||+++|+||||+ +.|+
T Consensus 80 ~P~~l~f~~~d~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~~ldL~l~pY~vl~t~~~~GlIE~V~ns~tl 159 (366)
T cd05165 80 KPLWLVFENADPTALSNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEEGLDLRMLPYGCLSTGDKIGLIEVVRDSTTI 159 (366)
T ss_pred CCcEEEEEccCcccccCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEecCCceEEEEeCCchhH
Confidence 99999999998 68999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHhhhh----------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEE
Q 003462 623 AQILSEHR----------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHV 692 (818)
Q Consensus 623 ~~I~~~~~----------~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHI 692 (818)
++|+++++ .+.+|++++++++.. +.+|++||++|||||||+||||||||||+|||||+++||+|||
T Consensus 160 ~~I~~~~~~~~~~~f~~~~l~~wl~~~~~~~~~----~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~~G~l~HI 235 (366)
T cd05165 160 ANIQQETGGNATAAFKKEALLHWLKEKNPTEEK----LDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKETGQLFHI 235 (366)
T ss_pred HHHHHhcccccccccCcHHHHHHHHhhCCCHHH----HHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcCCCCEEEE
Confidence 99998753 588999999875432 3678999999999999999999999999999999999999999
Q ss_pred eeccccCCCCCC-----CCCCccccHHHHHHhCC----CCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCC
Q 003462 693 DFGYILGRDPKP-----FPPPMKLCKEMVEAMGG----AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDI 763 (818)
Q Consensus 693 DFG~ilg~~p~p-----f~~PFrLT~~mv~~mGg----~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~ 763 (818)
||||+||++|++ +.||||||++|+++||+ .+++.|+.|+.+|+.||.+||+|+++|++||++|+++++||+
T Consensus 236 DFG~ilg~~~~~~~i~~E~~PFkLT~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~ 315 (366)
T cd05165 236 DFGHILGNYKSKFGINRERVPFVLTPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPEL 315 (366)
T ss_pred ehHHhhccCCccCCCCCCCCCeeecHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCccc
Confidence 999999998864 45899999999999984 468899999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHh
Q 003462 764 ASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 815 (818)
Q Consensus 764 ~~~~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~-s~~t~~~d~~H~~aq 815 (818)
+..+ +|.++++||++++||+||.++|+++|++|++ +|.|++++++|++|+
T Consensus 316 ~~~~--~i~~lr~rf~l~~se~eA~~~f~~~I~~s~~~~~~t~~~~~~H~~~~ 366 (366)
T cd05165 316 TSKE--DIEYLRDTLALGKSEEEALKYFLDKFNEALDGSWTTKFNWFSHLVLK 366 (366)
T ss_pred Cchh--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCceeeeHHHHHHhcC
Confidence 9764 6999999999999999999999999999997 688999999999985
No 9
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.6e-86 Score=722.83 Aligned_cols=335 Identities=30% Similarity=0.563 Sum_probs=303.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC-CChhHH-HHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceeeccccc
Q 003462 472 QSLVRQTELTAQLCSIMRDVGNVR-GNTQKK-IEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALH 549 (818)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~-~~~~~k-~e~L~~~L~~~~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~ 549 (818)
+.|.+|++++++|.++++.||..+ +.++++ .+.+++.|++. ++.+...++++|+||++.+.+|.+++|+||+|+++
T Consensus 2 ~~l~~Q~~~~~~L~~~~~~ik~~~~~~~~k~~~~~l~~~l~~~--~~~~~~~~~~lPl~P~~~~~~i~~e~c~v~~S~~~ 79 (366)
T cd05175 2 KHLSRQVEAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRP--DFMDALQGFTSPLNPAHQLGNLRLEECRIMSSAKR 79 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhcCc--hhhhccCCCCCCCCCceEEEEEEeccceeechhcC
Confidence 368999999999999999999876 444344 66788888653 22223248999999999999999999999999999
Q ss_pred eEEEEEEeCCC------CeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccH
Q 003462 550 PLRLTFRTASG------GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSL 622 (818)
Q Consensus 550 P~~l~f~~~dg------~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl 622 (818)
|+||+|+++|+ ..|.+|||+|||||||++++|+|++||+||+++|+||+++||+|+|||+++|+||||+ +.|+
T Consensus 80 Pl~l~f~~~d~~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vl~tg~~~GlIE~V~ns~tl 159 (366)
T cd05175 80 PLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQGLDLRMLPYGCLSIGDCVGLIEVVRNSHTI 159 (366)
T ss_pred CeEEEEEcCCcccccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEEEecCCceEEEEcCCchhH
Confidence 99999999987 4689999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHhhh----------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEE
Q 003462 623 AQILSEH----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHV 692 (818)
Q Consensus 623 ~~I~~~~----------~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHI 692 (818)
++|++++ .++.+|++++++++ ...+|++||++|||||||+||||||||||||||||+++||+|||
T Consensus 160 ~~I~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~~~G~l~HI 234 (366)
T cd05175 160 MQIQCKGGLKGALQFNSHTLHQWLKDKNKGE-----MYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVKDDGQLFHI 234 (366)
T ss_pred HHHHhccccccccccCchhHHHHHhhcCCcH-----HHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEcCCCCEEEE
Confidence 9998753 36889999887653 23679999999999999999999999999999999999999999
Q ss_pred eeccccCCCCCCC-----CCCccccHHHHHHhCC-----CCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCC
Q 003462 693 DFGYILGRDPKPF-----PPPMKLCKEMVEAMGG-----AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPD 762 (818)
Q Consensus 693 DFG~ilg~~p~pf-----~~PFrLT~~mv~~mGg-----~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~ 762 (818)
||||+||++|+++ .+|||||+||+++||| .+++.|+.|+.+|++||++||+|+++|++||++|+++||||
T Consensus 235 DFG~iLg~~p~~~~~~~E~~PFkLT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~ 314 (366)
T cd05175 235 DFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPE 314 (366)
T ss_pred ehHHhhcCCCccCCCCCCCCCeEecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 9999999998754 5899999999999974 36789999999999999999999999999999999999999
Q ss_pred CcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHh
Q 003462 763 IASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 815 (818)
Q Consensus 763 ~~~~~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~-s~~t~~~d~~H~~aq 815 (818)
++..++ +.++++||++++||+||.++|.++|++|++ +|.|++++++|++||
T Consensus 315 l~~~~~--i~~lr~rf~l~~sd~eA~~~f~~~I~~s~~~~w~t~~n~~~H~~~~ 366 (366)
T cd05175 315 LQSFDD--IAYIRKTLALDKTEQEALEYFMKQMNDAHHGGWTTKMDWIFHTIKQ 366 (366)
T ss_pred cCCccH--HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcCceeeehHHHHhhcC
Confidence 998764 789999999999999999999999999997 688899999999998
No 10
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=1.2e-85 Score=717.89 Aligned_cols=333 Identities=33% Similarity=0.625 Sum_probs=307.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC--CCChhHHHHHHHHHHHhh--hcccccCCCCcccCCCCcEEEEEEecCcceeeccc
Q 003462 472 QSLVRQTELTAQLCSIMRDVGNV--RGNTQKKIEKLRQLLSGL--LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSA 547 (818)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~--~~~~~~k~e~L~~~L~~~--~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~ 547 (818)
+.|.+|.+++++|..|++.||.. +++++++.+.|++.|++. ...+ ..+++|+||++.+.++.+++|+||+|+
T Consensus 2 ~~l~~q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~lPl~p~~~~~~~~~~~~~v~~Sk 77 (361)
T cd05174 2 KVLMKQGEALSKMKALNDFVKLSSQKATKPQTKEDMHVCMKQETYLEAL----SHLQSPLSPSIILCEVCVDQCTFMDSK 77 (361)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCchhhhhh----ccCCCCCCCceEEEEEEcCcEEEEecc
Confidence 46999999999999999999987 466778899999999874 3333 268999999999999999999999999
Q ss_pred cceEEEEEEeCC--CCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccHHH
Q 003462 548 LHPLRLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQ 624 (818)
Q Consensus 548 ~~P~~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~ 624 (818)
++|++|+|++.| |+.|++|||+|||||||++++|+|++||.+|+++|+||+++||+|+|||+++||||||+ +.|+++
T Consensus 78 ~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~Tl~~ 157 (361)
T cd05174 78 MKPLWIMYKNEEAGGGSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEGLDLRMTPYGCLSTGDKTGLIEVVKNSDTIAN 157 (361)
T ss_pred CCceEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEecCCceEEEEeCCchhHHH
Confidence 999999999976 99999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred HHhhh-----------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEe
Q 003462 625 ILSEH-----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVD 693 (818)
Q Consensus 625 I~~~~-----------~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHID 693 (818)
|+++. ..+.+|++++++++ + ..+|++||++|||||||+||||||||||||||||+++||+||||
T Consensus 158 I~~~~~~~~~~~~f~~~~l~~~l~~~~~~~--~---~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~~~G~l~HID 232 (361)
T cd05174 158 IQLNKSNMAATAAFNKDALLNWLKSKNPGD--A---LDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHID 232 (361)
T ss_pred HHHhhcccchhccccchHHHHHHHhcCCcH--H---HHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEcCCCCEEEEe
Confidence 98642 36889999988763 2 25789999999999999999999999999999999999999999
Q ss_pred eccccCCCCC-----CCCCCccccHHHHHHhC---CCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcC
Q 003462 694 FGYILGRDPK-----PFPPPMKLCKEMVEAMG---GAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIAS 765 (818)
Q Consensus 694 FG~ilg~~p~-----pf~~PFrLT~~mv~~mG---g~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~ 765 (818)
|||+||+.|+ |+++|||||++|+++|| |.+++.|+.|+.+|+.||++||+|+++|+++|++|+++||||++.
T Consensus 233 FG~ilg~~~~~~~~~~E~vPFkLT~e~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~ 312 (361)
T cd05174 233 FGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNC 312 (361)
T ss_pred hHHhhcCCcccCCCCCCCCCeeccHHHHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCc
Confidence 9999998764 46799999999999996 246788999999999999999999999999999999999999987
Q ss_pred CchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHh
Q 003462 766 DPEKGILKLQEKFRLDLDDEACVHFFQDLINESV-SALFPQMVETIHRWAQ 815 (818)
Q Consensus 766 ~~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~-~s~~t~~~d~~H~~aq 815 (818)
. .++.++++||+|++||+||.++|+++|++|+ ++|.|++++++|++|+
T Consensus 313 ~--~~i~~l~~~~~l~~se~ea~~~f~~~i~~s~~~~~~~~~n~~~H~~a~ 361 (361)
T cd05174 313 S--KDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTKVNWLAHNVSK 361 (361)
T ss_pred h--hHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCchhhhHHHHHhhcC
Confidence 5 3699999999999999999999999999999 5889999999999985
No 11
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=100.00 E-value=9.1e-86 Score=719.80 Aligned_cols=335 Identities=30% Similarity=0.546 Sum_probs=307.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC----ChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceeeccc
Q 003462 472 QSLVRQTELTAQLCSIMRDVGNVRG----NTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSA 547 (818)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~----~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~ 547 (818)
++|.+|++++++|.+|+..||..+. .+.++.+.|++.|++... + .++.++++|+||++.+.+|.+++|+||+|+
T Consensus 2 ~~~~~q~~~~~~l~~i~~~vk~~~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~~~~~lPl~P~~~~~~i~~~~~~v~~S~ 79 (365)
T cd00894 2 HDFTQQVQVIEMLQKVTLDIKSLSAEKYDVSSQVISQLKQKLENLQN-L-NLPESFRVPYDPGLRAGALVIEKCKVMASK 79 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhh-c-cCCCCCCCCCCCceEEEEEEcCceEEEccc
Confidence 4699999999999999999998753 345667788888876442 2 456799999999999999999999999999
Q ss_pred cceEEEEEEeCCC-----CeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-Ccc
Q 003462 548 LHPLRLTFRTASG-----GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRS 621 (818)
Q Consensus 548 ~~P~~l~f~~~dg-----~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~t 621 (818)
++|++|+|++.|+ ..+.+|||.|||||||++++|+|++||++|+++|+||+++||+|+|||+++||||||+ +.|
T Consensus 80 ~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~ldL~l~pY~vi~tg~~~GlIE~V~ns~t 159 (365)
T cd00894 80 KKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATT 159 (365)
T ss_pred CCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHcCCCeEEEEEEEEEecCCceEEEEcCCchh
Confidence 9999999999886 5799999999999999999999999999999999999999999999999999999999 899
Q ss_pred HHHHHhhh---------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEE
Q 003462 622 LAQILSEH---------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHV 692 (818)
Q Consensus 622 l~~I~~~~---------~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHI 692 (818)
+++|+++. ..+.+|++++++++.. +..|++||++|||||||+||||||||||+|||||+++||+|||
T Consensus 160 l~~I~~~~~~~~~~~k~~~l~~~l~~~~~~~~~----~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~~~G~lfHI 235 (365)
T cd00894 160 IAKIQQSTVGNTGAFKDEVLSHWLKEKCPIEEK----FQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMITETGNLFHI 235 (365)
T ss_pred HHHHHHhcccccccccchhHHHHHHHhCCCHHH----HHHHHHHHHHHhHHHHHHHHhccccCccccceeEcCCCCEEEE
Confidence 99998753 3588999999876543 2578999999999999999999999999999999999999999
Q ss_pred eeccccCCCCC-----CCCCCccccHHHHHHhC---CCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003462 693 DFGYILGRDPK-----PFPPPMKLCKEMVEAMG---GAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 764 (818)
Q Consensus 693 DFG~ilg~~p~-----pf~~PFrLT~~mv~~mG---g~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 764 (818)
||||+||++|. |+.+|||||++|+++|| |.+|+.|+.|+++|++||++||+|+++|++||++|+++||||++
T Consensus 236 DFG~ilg~~~~~~gi~~E~~PFkLT~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~ 315 (365)
T cd00894 236 DFGHILGNYKSFLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLT 315 (365)
T ss_pred eeHHhhCCCCccCCCCCCCCCeeecHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccC
Confidence 99999999864 56799999999999998 66788999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHH
Q 003462 765 SDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSA-LFPQMVETIHRWA 814 (818)
Q Consensus 765 ~~~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~s-~~t~~~d~~H~~a 814 (818)
..+ ++.++++||++++||+||.++|.++|++|+++ +.|++++++|++|
T Consensus 316 ~~~--~i~~l~~~~~l~~se~eA~~~f~~~I~~s~~~~~~~~~n~~~h~~~ 364 (365)
T cd00894 316 SKE--DIEYIRDALTVGKSEEDAKKHFLDQIEVCRDKGWTVQFNWFLHLVL 364 (365)
T ss_pred cch--HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCeeeeHHHHHHhc
Confidence 765 48999999999999999999999999999975 6889999999997
No 12
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=100.00 E-value=3.6e-85 Score=716.28 Aligned_cols=334 Identities=32% Similarity=0.588 Sum_probs=305.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC--ChhHHHHHHHHHHHhh-hcccccCCCCcccCCCCcEEEEEEecCcceeecccc
Q 003462 472 QSLVRQTELTAQLCSIMRDVGNVRG--NTQKKIEKLRQLLSGL-LSELTYFEEPIRSPLAPNILITGIVPSESSIFKSAL 548 (818)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~--~~~~k~e~L~~~L~~~-~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~ 548 (818)
+.|.+|++++++|.++++.||..++ +++++.+.|+..|++. ..+.. .+++||+||++.|.+|.+++|+||+|++
T Consensus 2 ~~l~~Q~~~~~~l~~~~~~~k~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~lPldP~~~v~~i~~~~~~v~~S~~ 78 (362)
T cd05173 2 KVLSKQVEALNKLKTLNSLIKLNAVKLSKAKGKEAMHTCLRQSAYREAL---SDLQSPLNPSIILSELNVEKCKYMDSKM 78 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhcccchhcc---cCCCCCCCCceEEEEEEcCceEEecccC
Confidence 4699999999999999999998654 6778899999999875 23332 4899999999999999999999999999
Q ss_pred ceEEEEEEeC--CCCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccHHHH
Q 003462 549 HPLRLTFRTA--SGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQI 625 (818)
Q Consensus 549 ~P~~l~f~~~--dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I 625 (818)
+|++|+|.+. +|..|.+|||+|||||||++++|+|++||+||+++|+||+++||+|+|||+++|+||||+ +.|+++|
T Consensus 79 ~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~~ldL~l~pY~vi~t~~~~GlIE~V~ns~tl~~I 158 (362)
T cd05173 79 KPLWIVYNNKLFGGDSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEAGLDLRIVPYGCLATGDRSGLIEVVSSAETIADI 158 (362)
T ss_pred CCeEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCchhHHHH
Confidence 9999999885 688999999999999999999999999999999999999999999999999999999999 8999999
Q ss_pred Hhhh-----------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEee
Q 003462 626 LSEH-----------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDF 694 (818)
Q Consensus 626 ~~~~-----------~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDF 694 (818)
+.+. ..+.+|++++++++ . ..+|++||++|||||||+||||||||||+|||||+++||+|||||
T Consensus 159 ~~~~~~~~~~~~f~~~~l~~~l~~~~~~~--~---~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~~~G~l~HIDF 233 (362)
T cd05173 159 QLNSSNVAAAAAFNKDALLNWLKEYNSGD--D---LERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVRKNGQLFHIDF 233 (362)
T ss_pred HHhccccchhcccChhHHHHHHHhcCCcH--H---HHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCEEEEeh
Confidence 8542 36889999877653 2 267899999999999999999999999999999999999999999
Q ss_pred ccccCCCCC-----CCCCCccccHHHHHHhC-CC--CccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCC
Q 003462 695 GYILGRDPK-----PFPPPMKLCKEMVEAMG-GA--ESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 766 (818)
Q Consensus 695 G~ilg~~p~-----pf~~PFrLT~~mv~~mG-g~--~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~ 766 (818)
||+||+.|+ |+++|||||++|+++|| |. +++.|+.|+.+|+.||.+||+|+++|+++|++|+++|+||++..
T Consensus 234 G~ilg~~~~~~~~~~E~vPFkLT~emv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~~ 313 (362)
T cd05173 234 GHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTSV 313 (362)
T ss_pred HHhhccCCcccCCCCCCCCeeecHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccch
Confidence 999998653 57899999999999996 43 46789999999999999999999999999999999999999975
Q ss_pred chHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHh
Q 003462 767 PEKGILKLQEKFRLDLDDEACVHFFQDLINESVS-ALFPQMVETIHRWAQ 815 (818)
Q Consensus 767 ~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~-s~~t~~~d~~H~~aq 815 (818)
. +|.++++||++++||+||.++|+++|++|++ ++.|++++++|++|+
T Consensus 314 ~--~i~~l~~r~~l~~se~eA~~~f~~~i~~s~~~~~~t~~n~~~H~~~~ 361 (362)
T cd05173 314 K--DIQYLKDSLALGKSEEEALKQFRQKFDEALRESWTTKVNWMAHTVRK 361 (362)
T ss_pred h--HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 4 6999999999999999999999999999995 789999999999986
No 13
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=100.00 E-value=1.3e-84 Score=713.15 Aligned_cols=334 Identities=37% Similarity=0.631 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceeeccccceE
Q 003462 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (818)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~P~ 551 (818)
++|.+|++++++|.+|+..||..++ .++.+.|++.|++..+.. .+.++++|++|++.+.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~l~~i~~~vk~~~~--~~~~~~l~~~l~~~~~~~--~~~~~~lP~~p~~~~~~i~~~~~~v~~S~~~P~ 77 (353)
T cd05166 2 EEFKKQHKLVNKLGSIAEDVKSASE--SARQHVLRTGLGRVDSFL--LQNKCRLPLNPALDVKGIDVRECSYFNSNALPL 77 (353)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCch--HHHHHHHHHHHHhhhhhc--cCCCCccCCCCceEEEeEEcCceEEeccccCce
Confidence 4799999999999999999998863 467788999988754432 235899999999999999999999999999999
Q ss_pred EEEEEeCC--CCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccHHHHHhh
Q 003462 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (818)
Q Consensus 552 ~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~~ 628 (818)
+|+|+++| |+.|.+|||.|||||||+++||++++||++|+++|+|++++||+|+|||+++||||||+ +.|+++|+++
T Consensus 78 ~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~ldL~l~~Y~vip~~~~~GlIE~V~ns~tl~~I~~~ 157 (353)
T cd05166 78 KISFVNADPMGENISVIFKAGDDLRQDMLVLQMINIMDKIWLQEGLDLRMITFRCLSTGYDRGMVELVPDAETLRKIQVE 157 (353)
T ss_pred EEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCCCCceeEEEEEEEcCCCcceEEEeCCchhHHHHHHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999 8999999987
Q ss_pred hh--------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccccCC
Q 003462 629 HR--------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGR 700 (818)
Q Consensus 629 ~~--------~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~ 700 (818)
++ .+.+||.++++++.. +.+|++||++|||||||+||||||||||+|||||+++||+|||||||+||+
T Consensus 158 ~g~~~~~~~~~l~~~l~~~~~~~~~----~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~~~G~l~HIDFG~~lg~ 233 (353)
T cd05166 158 EGLTGSFKDRPIAKWLMKHNPSELE----YEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLTKSGHMFHIDFGKFLGH 233 (353)
T ss_pred hCccccccchhHHHHHHHhCCChHH----HHHHHHHHHhHHHHHHHHHHHhhccccCCCceEECCCCCEEEEeeHHhccc
Confidence 54 689999999887543 357899999999999999999999999999999999999999999999998
Q ss_pred CC-----CCCCCCccccHHHHHHhCCC--CccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchHHHHH
Q 003462 701 DP-----KPFPPPMKLCKEMVEAMGGA--ESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILK 773 (818)
Q Consensus 701 ~p-----~pf~~PFrLT~~mv~~mGg~--~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~ 773 (818)
.+ +++++|||||++|+++|||. +++.|+.|+.+|+.||.+||+|+++|++++++|+.+++|||+..+ ++.+
T Consensus 234 ~~~~~~~~~E~~PFrLT~emv~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~~~--~i~~ 311 (353)
T cd05166 234 AQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKIQ--DLKY 311 (353)
T ss_pred ccccccCCCCCCCccccHHHHHHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCchh--HHHH
Confidence 76 36789999999999999754 678899999999999999999999999999999999999999654 6899
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003462 774 LQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 815 (818)
Q Consensus 774 l~~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq 815 (818)
+++||++++||+||.++|.++|++|+++++|++++++|++||
T Consensus 312 l~~r~~l~~s~~ea~~~~~~~I~~s~~s~~t~~~~~~H~~aq 353 (353)
T cd05166 312 VRDALRPQLTDAEATIQFTKMIQSSLGSAFTKLNFFIHNLAQ 353 (353)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999998
No 14
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=100.00 E-value=2.9e-84 Score=711.50 Aligned_cols=334 Identities=39% Similarity=0.702 Sum_probs=313.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceeeccccceE
Q 003462 472 QSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKSALHPL 551 (818)
Q Consensus 472 ~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S~~~P~ 551 (818)
++|.+|++|+++|.+|+..+|.. ++++++.+.|++.|++... .++.++++|++|++.|.+|.+++|+||+|+++|+
T Consensus 2 ~~l~~q~~~~~~l~~i~~~ik~~-~~~~~~~~~l~~~L~~~~~---~~~~~~~lP~~p~~~i~~i~~~~~~v~~S~~~P~ 77 (352)
T cd00891 2 SELLKQVEVINELKTLAKKVKRE-KSKSQRKELLREELKKLEN---NLPQEFTLPLDPRLEIKGLIIEKCKVMDSKKKPL 77 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHHhhhhc---cCCCCccCCCCCceEEEEEeccceEEeccccCCc
Confidence 47999999999999999999987 4567788899999987543 2456899999999999999999999999999999
Q ss_pred EEEEEeCC--CCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccHHHHHhh
Q 003462 552 RLTFRTAS--GGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE 628 (818)
Q Consensus 552 ~l~f~~~d--g~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~~ 628 (818)
+|+|+++| |+.|.+|||.|||||||++++|++++||.+|+++++|++++||+|+|||+++||||||+ +.|+++|+++
T Consensus 78 ~l~f~~~d~~g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~ldl~l~~Y~Vip~~~~~GlIE~V~ns~tl~~I~~~ 157 (352)
T cd00891 78 WLVFKNADPSGEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEGLDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKK 157 (352)
T ss_pred EEEEEecCCCCCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHCCCCeeeEEEEEEEccCCceEEEEeCCCccHHHHHHh
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999 9999999987
Q ss_pred hh---------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccccC
Q 003462 629 HR---------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 629 ~~---------~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
++ .+.+|+.+.++++.. +.+|++||++|||||||+||||||||||+|||||+++||+||||||++||
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~~~G~~~HIDFG~ilg 233 (352)
T cd00891 158 AGGVGGAFKDNPLMNWLKKKNKGEED----YEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLTKTGHLFHIDFGHFLG 233 (352)
T ss_pred cCccccccccchHHHHHHHhCCCHHH----HHHHHHHHhhhHHHHHHHHHHccccccCCCceEECCCCCEEEEehHHhhc
Confidence 53 588999999887543 35799999999999999999999999999999999999999999999999
Q ss_pred CCCCCC-----CCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchHHHHHH
Q 003462 700 RDPKPF-----PPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKL 774 (818)
Q Consensus 700 ~~p~pf-----~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l 774 (818)
++|+++ .+|||||++|+++|||.+++.|+.|+.+|+.||.+||+|++.|++++++|+.+++||++.. .++.++
T Consensus 234 ~~~~~~~~~~E~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~~--~~i~~l 311 (352)
T cd00891 234 NFKKKFGIKRERAPFVLTPDMAYVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQSI--EDIEYL 311 (352)
T ss_pred cCCccCCCCCCCCCeeecHHHHHHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCcH--HHHHHH
Confidence 887654 5899999999999999999999999999999999999999999999999999999999954 468999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003462 775 QEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 815 (818)
Q Consensus 775 ~~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq 815 (818)
++||++++||+||..+|.++|++|+++++|+++|++|+|||
T Consensus 312 ~~r~~l~~s~~~a~~~~~~lI~~s~~~~~~~~~~~~h~~~~ 352 (352)
T cd00891 312 RDALALDKSDEEATEYFRKLIHESLNSKTTKVNNFIHNLAH 352 (352)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHhcchHhHHHHHHHhhC
Confidence 99999999999999999999999999999999999999997
No 15
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=100.00 E-value=3.6e-78 Score=650.64 Aligned_cols=287 Identities=33% Similarity=0.551 Sum_probs=269.4
Q ss_pred ccCCCCcEEEEEEecCcceeeccc-cceEEEEEEeCCCC-------------eEEEEEEeCCCcchhHHHHHHHHHHHHH
Q 003462 524 RSPLAPNILITGIVPSESSIFKSA-LHPLRLTFRTASGG-------------TCKMIFKKGDDIRQDQLVVQMVSLMDRL 589 (818)
Q Consensus 524 ~lPl~p~~~i~~i~~~~~~v~~S~-~~P~~l~f~~~dg~-------------~~~~i~K~gDDLRqD~lvlQli~lmd~l 589 (818)
+||+||++.|++|.+++|+||+|+ ++|++++|++.|+. .+++|||.|||||||++++|+|++||+|
T Consensus 1 ylP~~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i 80 (311)
T cd05167 1 YLPSNPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNI 80 (311)
T ss_pred CCCCCCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHH
Confidence 589999999999999999999997 78999999998754 4899999999999999999999999999
Q ss_pred HhhcCCCccccccEEEEeeCCCCeeeeec-CccHHHHHhh-hhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHH
Q 003462 590 LKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE-HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVI 667 (818)
Q Consensus 590 l~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~~-~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~ 667 (818)
|+++++||+++||+|+|||+++||||||+ +.|+++|.+. .+.+.+||.++++++... .+.+|++||++|||||||+
T Consensus 81 ~~~~~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~~~~~l~~~f~~~~~~~~~~--~~~~a~~nF~~S~Agysv~ 158 (311)
T cd05167 81 FQSAGLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRTTDNGLYEYFTSKYGDESSL--AFQKARENFIRSMAAYSLI 158 (311)
T ss_pred HHHCCCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhhcccHHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 9999999876 468999999988654321 1357899999999999999
Q ss_pred HHHhccCCCCCCceeEcCCCCEEEEeeccccCCCCCC----CCCCccccHHHHHHhCCCC-ccccchHHHHHHHHHHHHH
Q 003462 668 TYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP----FPPPMKLCKEMVEAMGGAE-SQYYTRFKSYCCEAYNILR 742 (818)
Q Consensus 668 tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~~p~p----f~~PFrLT~~mv~~mGg~~-s~~~~~F~~~c~~a~~~LR 742 (818)
||||||||||+|||||+++||+|||||||+||++|++ +.+|||||++|+++|||.+ ++.|+.|+++|++||++||
T Consensus 159 tYiLgigDRHn~NILid~~G~l~HIDFG~il~~~p~~~~~~E~~PFkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR 238 (311)
T cd05167 159 SYLLQIKDRHNGNIMIDDDGHIIHIDFGFIFEISPGGNLKFESAPFKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAVR 238 (311)
T ss_pred HHHhhccccCccceEEcCCCCEEEEeeHHhhccCCCCCCCcCCCCEeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999865 5799999999999999998 8889999999999999999
Q ss_pred cCchHHHHHHHHHccCCCCCCcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003462 743 KSSNLILNLFHLMAGSNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 815 (818)
Q Consensus 743 k~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq 815 (818)
+|+++|++++++|+++++||++ ..++.++++||++++||+||.++|.++|++|+++++|+++|.+|.+.|
T Consensus 239 ~~~~~il~l~~lm~~s~lp~~~---~~~i~~l~~rf~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~ 308 (311)
T cd05167 239 PYMDEIVSLVELMLDSGLPCFR---GDTIKNLRQRFAPEKSEREAAEFMLSLIAESYEKFRTKGYDQFQYYQN 308 (311)
T ss_pred cCHHHHHHHHHHHHcCCchhhh---HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhc
Confidence 9999999999999999999998 447999999999999999999999999999999999999999999976
No 16
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-76 Score=689.28 Aligned_cols=482 Identities=27% Similarity=0.434 Sum_probs=416.5
Q ss_pred HHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhcCCCC-CCCHHHHHHHHHHHhcCCchHHH
Q 003462 311 LLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV-FESEEVRAYAVCILERADDDELQ 389 (818)
Q Consensus 311 llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~~~~~~aLeLL~~~-f~~~~VR~yAv~~L~~~~d~~l~ 389 (818)
++-..-.-+...|+||+.|+. |....+-+--..-+..|+|.+|..+|.+|.+. +.||.+-+||+++|+..+.++.+
T Consensus 1293 ~v~~~~~~~~~i~~al~~~~~---~~~~~~~~~dl~~~l~Wa~~~~~~~l~~l~p~~~~~p~~~~~~~~~l~s~~~~~~~ 1369 (1803)
T KOG0902|consen 1293 LVRFDPADLVHIPEALKLFVT---QKTTEESRSDLSHTLYWAPVSPLGVLDLLTPIRKPHPRLMQYAVRVLRSYSPNEML 1369 (1803)
T ss_pred HhhcChhhhhccHHHHHHHhc---cCcccccccchhheeeccccCcccchhhcccccCCCcHHHHHHHHHHHhCChhhhh
Confidence 444455567788999988874 53333322223445579999999999999964 47999999999999999999999
Q ss_pred HHHHHHHHHHhccccchhhHHHHHHHHhhcCchhhhHHHhhhhhhccCch--hh-hhhHHHHHHHHHHHHhhCCCCCCCc
Q 003462 390 CYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV--HA-KRFYSTHEILEESMMKLTPGVDGED 466 (818)
Q Consensus 390 ~yL~QLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~--~~-~~~~~~~~~l~~~~~~~l~~~~~~~ 466 (818)
+|.||+||+|||+.. ...+.++|+-|-++.-+||+|.|++++++.... .. ..+..++..+.+.++..+++
T Consensus 1370 fyvPQiVq~lryDkm--~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~~~~~~~~~~~~l~~~~e~i~~~~s~----- 1442 (1803)
T KOG0902|consen 1370 FYVPQIVQALRYDKM--GYVEEYILWAAGKSQLFAHQLIWNMKANLYVDEEAIVKADIGEILDRVREEITGSLSG----- 1442 (1803)
T ss_pred hhhHHHHHHHhhcch--hHHHHHHHHHhhhhHHHHHHHHHHhhhhhccccccccchhHHHHHHHHHHHHHhcCCc-----
Confidence 999999999999986 678889999999999999999999999984222 22 35666777788888876654
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHHHHHhhhcccccCCCCcccCCCCcEEEEEEecCcceeecc
Q 003462 467 GYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQLLSGLLSELTYFEEPIRSPLAPNILITGIVPSESSIFKS 546 (818)
Q Consensus 467 ~~~~~~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~~L~~~~~~l~~~~~~~~lPl~p~~~i~~i~~~~~~v~~S 546 (818)
..++.+.|+++|++++++|+..++..... ++|..++.+.|++++ + ...++||.+|+..|.+|+.+..+.+.|
T Consensus 1443 --~a~df~~rEf~ff~~vT~ISg~l~P~~k~-~erk~~i~~~l~kik--~---~~~~YlPs~P~~~v~~i~~~Sg~plQS 1514 (1803)
T KOG0902|consen 1443 --PARDFYEREFDFFNKVTSISGKLKPYPKG-DERKKAILEELSKIK--V---QPGCYLPSNPDAVVLDIDYKSGTPLQS 1514 (1803)
T ss_pred --hhhHHHHHHhHHHHHhhhccceeecCCCc-HHHHHHHHHHHHhhc--c---cCceecCCCCCceEEEeecCCCccchh
Confidence 34567999999999999999999987543 445556666666542 2 248999999999999999999999999
Q ss_pred -ccceEEEEEEe----CCCCe----E------EEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCC
Q 003462 547 -ALHPLRLTFRT----ASGGT----C------KMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDE 611 (818)
Q Consensus 547 -~~~P~~l~f~~----~dg~~----~------~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~ 611 (818)
++.|...+|+. .||.. - ..|||.|||+|||++++|+|.+|..||+..|+|+++-||+|+||++.|
T Consensus 1515 ~aK~PfmatF~vkr~~~~g~~~~~k~~~~~WQa~IFKvGDDcRQD~LaLQiislf~~if~~~gLd~~lfPYrV~aT~pGc 1594 (1803)
T KOG0902|consen 1515 AAKAPFMATFKVKRLEKDGLQCRSKSQKISWQAAIFKVGDDCRQDMLALQIISLFKNIFQLVGLDLYLFPYRVVATAPGC 1594 (1803)
T ss_pred hccCCeeEEEeeeeccCCcccccccccchhhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHcCCceEEeeeeeeccCCCC
Confidence 58999999998 45532 1 489999999999999999999999999999999999999999999999
Q ss_pred Ceeeeec-CccHHHHHhh-hhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCE
Q 003462 612 GLLEFIP-SRSLAQILSE-HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRL 689 (818)
Q Consensus 612 GlIE~V~-s~tl~~I~~~-~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~l 689 (818)
|+||+|| +.|-+++-++ .+++++||..++++++. .+ .++||.||++|+|||||++|+|+++||||+|||||+.||+
T Consensus 1595 GVIEviPn~~SRdqlGr~t~~glyeyF~~~~G~~~s-~~-fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~Dd~G~~ 1672 (1803)
T KOG0902|consen 1595 GVIEVIPNSKSRDQLGRETDNGLYEYFTRKYGDESS-EA-FQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMIDDQGHI 1672 (1803)
T ss_pred ceEEeCCCCccHHHhcccccccHHHHHHHhcCccch-HH-HHHHHHHHHHHHHHHHHHHHHcccccccCCceeEccCCCE
Confidence 9999999 7777666654 47899999999988653 22 3689999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCCCC---CCCCccccHHHHHHhCCCC-ccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcC
Q 003462 690 FHVDFGYILGRDPKP---FPPPMKLCKEMVEAMGGAE-SQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIAS 765 (818)
Q Consensus 690 fHIDFG~ilg~~p~p---f~~PFrLT~~mv~~mGg~~-s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~ 765 (818)
+||||||+|...|+. |.+|||||+||+..|||.. +..|..|.++|++||.+.|.|++.|+.++++|+++|+||++.
T Consensus 1673 iHIDFGf~~e~sPGgnl~fE~~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfrg 1752 (1803)
T KOG0902|consen 1673 IHIDFGFMFESSPGGNLGFEPPFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFRG 1752 (1803)
T ss_pred EEEeeeeEEecCCCCccCcCCCccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccCc
Confidence 999999999999875 7789999999999999965 788999999999999999999999999999999999999975
Q ss_pred CchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003462 766 DPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 815 (818)
Q Consensus 766 ~~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq 815 (818)
+ +|.+++.||++++||.||..++..+|.+|.++++|..||.++.+.+
T Consensus 1753 ~---~i~nl~~RF~pemsereAa~fm~~vi~~~~~~~rt~~YD~~Q~~~n 1799 (1803)
T KOG0902|consen 1753 Q---TIGNLRARFAPEMSEREAALFMLSVITDSYLKIRTKMYDQIQYLQN 1799 (1803)
T ss_pred c---hHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 6999999999999999999999999999999999999999988765
No 17
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=100.00 E-value=4.3e-71 Score=591.49 Aligned_cols=275 Identities=31% Similarity=0.543 Sum_probs=256.9
Q ss_pred EecCcceeeccc-cceEEEEEEeCCCC--eEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCC
Q 003462 536 IVPSESSIFKSA-LHPLRLTFRTASGG--TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEG 612 (818)
Q Consensus 536 i~~~~~~v~~S~-~~P~~l~f~~~dg~--~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~G 612 (818)
+.+-.+++++|+ +.|.++.|...||. .+++|||.|||||||++++|++++||.+|+++++|++++||+|+|||+++|
T Consensus 3 ~~~~~~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~l~l~l~~Y~vi~~s~~~G 82 (289)
T cd00893 3 KIYISPKILQSALKIPYLELKKLTDSTLINSEFIVKCGDDLRQDILATQIITELQKIFELMFLDLWLNPYLVLPVSKTGG 82 (289)
T ss_pred cccccchHHHHhhcCchhhccCccCCCCeeEEEEEECCCcccHHHHHHHHHHHHHHHHHHcCCCceeEEEEEEECCCCce
Confidence 556778999998 57999999988775 899999999999999999999999999999999999999999999999999
Q ss_pred eeeeec-CccHHHHHhhh-hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEE
Q 003462 613 LLEFIP-SRSLAQILSEH-RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLF 690 (818)
Q Consensus 613 lIE~V~-s~tl~~I~~~~-~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lf 690 (818)
+||||+ +.|+++|++++ +++.+|+.+.++++... .+.++++||++|||||||+||||||||||+|||||+++||+|
T Consensus 83 lIE~V~ns~tl~~i~~~~~~~l~~~~~~~~~~~~~~--~~~~a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~~G~li 160 (289)
T cd00893 83 IIEFIPNSISIHEIKKQQINSLYDYFLELYGSYTTE--AFLQARYNFIESMAGYSLLCYLLQIKDRHNGNILLDSDGHII 160 (289)
T ss_pred eEEEeCCchhHHHHHHhccccHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEECCCCCEE
Confidence 999999 89999999875 57899998888764322 135789999999999999999999999999999999999999
Q ss_pred EEeeccccCCCCCC----CCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCC
Q 003462 691 HVDFGYILGRDPKP----FPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 766 (818)
Q Consensus 691 HIDFG~ilg~~p~p----f~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~ 766 (818)
|||||++||.+|++ +.+|||||++|+++|||.+++.|+.|+..|+.||.+||+|++.|++++++|+.+++||++
T Consensus 161 HIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~-- 238 (289)
T cd00893 161 HIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFR-- 238 (289)
T ss_pred EEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhHHHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccC--
Confidence 99999999999876 679999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003462 767 PEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 815 (818)
Q Consensus 767 ~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq 815 (818)
..++.++++||++++||++|.++|.++|++|+++++|+++|.+|.+.|
T Consensus 239 -~~~i~~l~~r~~l~~s~~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~ 286 (289)
T cd00893 239 -GSTIKKLKERLCLNMSEKEAINTVMKKIDSSYNSITTKLYDKVQYYQN 286 (289)
T ss_pred -HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHC
Confidence 346899999999999999999999999999999999999999999876
No 18
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=100.00 E-value=1e-68 Score=574.21 Aligned_cols=265 Identities=31% Similarity=0.551 Sum_probs=244.9
Q ss_pred ccceEEEEEEeCCC--CeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccHH
Q 003462 547 ALHPLRLTFRTASG--GTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLA 623 (818)
Q Consensus 547 ~~~P~~l~f~~~dg--~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~ 623 (818)
+.+|+..+.-+..+ ..+.+|||.|||||||+++||++++||.+|+++++|++++||+|+|||+++||||||+ +.|++
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~~l~l~l~~Y~vip~~~~~GlIE~V~ns~tl~ 94 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEEGLPLWLRPYEILVTSSNSGLIETIPDTVSID 94 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCCCCceeeeEEEEEccCCceeEEEeCCchhHH
Confidence 44566665555544 4799999999999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHhhhh----hHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccccC
Q 003462 624 QILSEHR----SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 624 ~I~~~~~----~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
+|+++++ ++.+||.+.++++... +.++++||++|||||||+||||||||||+|||||+++||+||||||++||
T Consensus 95 ~i~k~~~~~~~~l~~~f~~~~~~~~~~---~~~a~~nF~~S~A~ySvv~YvLGigDRH~~NILi~~~G~liHIDFG~~fg 171 (293)
T cd05168 95 SLKKKLTSKFKSLLDFFKKTFGDPSER---FREAQKNFIESLAGYSLICYLLQIKDRHNGNILIDNDGHIIHIDFGFMLS 171 (293)
T ss_pred HHHHHhccCCchHHHHHHHHcCCCcHH---HHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEcCCCCEEEEehHHhhc
Confidence 9998864 7999999988775322 35789999999999999999999999999999999999999999999999
Q ss_pred CCCCC---CCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccC-CCCCCcCCchHHHHHHH
Q 003462 700 RDPKP---FPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGS-NIPDIASDPEKGILKLQ 775 (818)
Q Consensus 700 ~~p~p---f~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~-~ip~~~~~~~~~i~~l~ 775 (818)
.+|++ +.||||||++|+++|||.+++.|+.|+..|+.||.+||+|++.|++++++|+.+ ++||++. +..++.+++
T Consensus 172 ~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~ll~~m~~~~~lp~f~~-~~~~i~~l~ 250 (293)
T cd05168 172 NSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFLKGFMALRKHVDRIILLVEIMQSDSKLPCFKA-GEFTIQQLR 250 (293)
T ss_pred ccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHHHHHHHHHhchHHHHHHHHHHccCCCCccccC-chHHHHHHH
Confidence 98874 579999999999999999999999999999999999999999999999999998 9999996 556799999
Q ss_pred HHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Q 003462 776 EKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQ 815 (818)
Q Consensus 776 ~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq 815 (818)
+||++++||++|.++|+++|++|+++++|+++|.+|.+.|
T Consensus 251 ~r~~l~~se~~a~~~~~~lI~~s~~~~~t~~yD~~q~~~~ 290 (293)
T cd05168 251 DRFMLNLTEEQLEVFVDELINQSLDNWRTRLYDKFQYLTN 290 (293)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999986
No 19
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=100.00 E-value=7.9e-57 Score=471.28 Aligned_cols=224 Identities=27% Similarity=0.459 Sum_probs=209.2
Q ss_pred EEEEecCcceeeccccceEEEEEEeCCCCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEee
Q 003462 533 ITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATG 608 (818)
Q Consensus 533 i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~----~ldL~l~~Y~Vlp~~ 608 (818)
|.+|.+ .++|++|+++|++|+|+++||+.|.+|+|.|||||||+++||++++||.+|+++ ++++.+++|+|+|+|
T Consensus 1 i~~~~~-~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls 79 (235)
T cd05172 1 IVGFDE-RVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMT 79 (235)
T ss_pred CCCcCC-ceEEeccCCCCEEEEEECCCCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeC
Confidence 346665 699999999999999999999999999999999999999999999999999975 689999999999999
Q ss_pred CCCCeeeeec-CccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEc-CC
Q 003462 609 QDEGLLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DD 686 (818)
Q Consensus 609 ~~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~-~~ 686 (818)
+++|+||||+ +.|+.+|+++ ..+.+|+.+.++++..|+ .++++|++|||+||++||||||||||++||||+ +|
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~-~~l~~~~~~~~~~~~~~~----~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~t 154 (235)
T cd05172 80 PRFGLIEWLENTTPLKEILKN-DLLRRALVEMSASPEAFL----SLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLET 154 (235)
T ss_pred CCCceEEEcCCchhHHHHHhh-HHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCC
Confidence 9999999999 8999999985 678899998888766543 579999999999999999999999999999999 69
Q ss_pred CCEEEEeeccccCCCCC----CCCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCC
Q 003462 687 GRLFHVDFGYILGRDPK----PFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPD 762 (818)
Q Consensus 687 G~lfHIDFG~ilg~~p~----pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~ 762 (818)
|+++|||||++||++++ |+.||||||++|+++||+.+.+ |.|+..|+.++.+||+|++.|++++++++.+++-+
T Consensus 155 G~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~--G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~ 232 (235)
T cd05172 155 GGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKAD--GLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLD 232 (235)
T ss_pred CcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCC--ChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhh
Confidence 99999999999998865 6789999999999999999988 99999999999999999999999999999999988
Q ss_pred Cc
Q 003462 763 IA 764 (818)
Q Consensus 763 ~~ 764 (818)
|+
T Consensus 233 w~ 234 (235)
T cd05172 233 WK 234 (235)
T ss_pred hc
Confidence 75
No 20
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=100.00 E-value=1.2e-56 Score=470.68 Aligned_cols=224 Identities=26% Similarity=0.504 Sum_probs=210.0
Q ss_pred EEEecCcceeeccccceEEEEEEeCCCCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEeeC
Q 003462 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQ 609 (818)
Q Consensus 534 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~----~ldL~l~~Y~Vlp~~~ 609 (818)
.+|. ++++|++|+++|++|+|.++||+.|.+|+|.|||||||++++|++++||.+|+++ ++++.++||+|+|+|+
T Consensus 2 ~~~~-~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~ 80 (237)
T cd00892 2 SGFE-DEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNE 80 (237)
T ss_pred cccc-CeEEEEeccCCceEEEEEcCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCC
Confidence 3455 4699999999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred CCCeeeeec-CccHHHHHhhh--hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcC-
Q 003462 610 DEGLLEFIP-SRSLAQILSEH--RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD- 685 (818)
Q Consensus 610 ~~GlIE~V~-s~tl~~I~~~~--~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~- 685 (818)
++||||||+ +.|+.+|++++ ..+.+|+.+.++++..+ -.++++|+.|||+|||+||||||||||++||||++
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~ 156 (237)
T cd00892 81 ECGIIEWVPNTATLRSILLEIYPPVFHEWFLENFPDPSAW----LKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSN 156 (237)
T ss_pred CCceEEECCCCccHHHHHHHhCCHHHHHHHHHHCcCHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcC
Confidence 999999999 89999999875 47889999999886554 35799999999999999999999999999999996
Q ss_pred CCCEEEEeeccccCCC---CCCCCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCC
Q 003462 686 DGRLFHVDFGYILGRD---PKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPD 762 (818)
Q Consensus 686 ~G~lfHIDFG~ilg~~---p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~ 762 (818)
+|+++|||||++||.+ ++|++||||||++|+++||+.+++ |.|+..|+.++.+||+|++.|++++++|+.+++-+
T Consensus 157 tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~--g~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~ 234 (237)
T cd00892 157 TGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVE--GLFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVE 234 (237)
T ss_pred CCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCC--CchHHHHHHHHHHHHhCHHHHHHHHHHHhhccchh
Confidence 9999999999999987 457899999999999999999988 99999999999999999999999999999999988
Q ss_pred Cc
Q 003462 763 IA 764 (818)
Q Consensus 763 ~~ 764 (818)
|+
T Consensus 235 w~ 236 (237)
T cd00892 235 WS 236 (237)
T ss_pred cc
Confidence 86
No 21
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.1e-54 Score=555.96 Aligned_cols=522 Identities=25% Similarity=0.354 Sum_probs=373.4
Q ss_pred ccCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCC--HHHHHHHHHHhcCCCCCCH
Q 003462 279 DRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSD--VQEAKQALELMGRWEMIDV 356 (818)
Q Consensus 279 d~d~kp~~~~~~~l~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~--~~e~~~a~~lL~~W~~~~~ 356 (818)
.+.+...+.....++.+...+.+..-+...+...|...-.......+.......+.+.+ .....+..+++..+...+.
T Consensus 1486 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 1565 (2105)
T COG5032 1486 LKLLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLLSAKDAAGSYYKNFHIFDLEISVIPFIPQLLSSLSLLDL 1565 (2105)
T ss_pred hHHhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhhhHHHHHHhhhhhcccccccccccchhhhhhhhcchhHH
Confidence 34444445555666666666666555666677777776665555566666665554433 3335666788888988888
Q ss_pred hhHhhcCCC-CCCCHHHHHHHHH---------HHhcCCchHHHHHHHHHH-----H-------------HHhccccchhh
Q 003462 357 CDALELLSP-VFESEEVRAYAVC---------ILERADDDELQCYLLQLV-----Q-------------ALRFERSDKSR 408 (818)
Q Consensus 357 ~~aLeLL~~-~f~~~~VR~yAv~---------~L~~~~d~~l~~yL~QLV-----Q-------------aLkyE~~~~s~ 408 (818)
.+|.+++.. .+.++.-+.|..+ .-..+. ++....-... | +|..+.. ..-
T Consensus 1566 ~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~e~~~~--~~~~~~~~~~~~~v~~~~~~~~E~~~~~~~l~~~~~-~~~ 1642 (2105)
T COG5032 1566 NSAQSLLSKIGKEHPQALVFTLRSAIESTALSKESVAL--SLENKSRTHDPSLVKEALELSDENIRIAYPLLHLLF-EPI 1642 (2105)
T ss_pred HHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhhHhHHH--HHhhhhhcCChhhHhHHHhhhhhhhhhhhhhhhhhH-HHH
Confidence 889998887 5555443333322 211110 0111111111 1 1111110 123
Q ss_pred HHHHHHHHhhcCc--hhhhHHHhhhhhhccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 003462 409 LSQFLVQRSSHNI--ELASFLRWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCS 486 (818)
Q Consensus 409 L~~fLi~ra~~n~--~i~~~l~W~L~~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~ 486 (818)
|.+++-+++..+. .++.-..|.+..+..+-................+.+.. +...++.+..+....+.-.+
T Consensus 1643 l~q~~~r~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~ 1715 (2105)
T COG5032 1643 LAQLLSRLSSENNKISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKS-------PRKIRKKFKIDISLLNLSRK 1715 (2105)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhh-------HHHHHHHHHhhhhhhhhhHH
Confidence 7778888888887 58888888888777654321000000111122222211 01233445555555555555
Q ss_pred HH-HhhccCCCChhHHHHHHHHHHHhh---hcccccCCCCcccCCC-CcEEEEEEecCcceeeccccceEEEEEEeCCCC
Q 003462 487 IM-RDVGNVRGNTQKKIEKLRQLLSGL---LSELTYFEEPIRSPLA-PNILITGIVPSESSIFKSALHPLRLTFRTASGG 561 (818)
Q Consensus 487 i~-~~vk~~~~~~~~k~e~L~~~L~~~---~~~l~~~~~~~~lPl~-p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~ 561 (818)
+. ..++..++..++..+......... .++......|...+.+ |.+.|.++.|+...+.++.++|++++++|+||+
T Consensus 1716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~P~~~~~~k~~v~I~~f~p~~~~~~~~~~~p~rl~~rgsdG~ 1795 (2105)
T COG5032 1716 LYISVLRSIRKRLKRLLELRLKKVSPKLLLFHAFLEIKLPGQYLLDKPFVLIERFEPEVSVVKSHLQRPRRLTIRGSDGK 1795 (2105)
T ss_pred HHHHHHHHHHHHhHHHHHHHhcccCHHHHhccccccccCCcccccCCCCceEEEecCceeeeecccccceEEEEEecCCc
Confidence 55 444443322222222111110000 0111111124445555 899999999986655555999999999999999
Q ss_pred eEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCC----CccccccEEEEeeCCCCeeeeec-CccHHHHHhhhh------
Q 003462 562 TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENL----DLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHR------ 630 (818)
Q Consensus 562 ~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~l----dL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~~~~------ 630 (818)
.|++++|+|||+|||+++||++++||++|++++. |+++++|+|+|||+++|+||||| +.|+++|.+++.
T Consensus 1796 ~y~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vipls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~ 1875 (2105)
T COG5032 1796 LYSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIPLSPGSGIIEWVPNSDTLHSILREYHKRKNIS 1875 (2105)
T ss_pred EEEEEeecCccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeEeccCCcceEEEecCcchHHHHHHHHhhhcCCC
Confidence 9999999999999999999999999999999975 99999999999999999999999 799999987632
Q ss_pred --------------------------------hHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 003462 631 --------------------------------SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHL 678 (818)
Q Consensus 631 --------------------------------~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~ 678 (818)
.+++||-..++++.+| ..+|+||++|||+|||+|||||+|||||
T Consensus 1876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~~~~~w----~~aR~Ny~~SlA~ySvigYiLglgDRH~ 1951 (2105)
T COG5032 1876 IDQEKKLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFPNPEDW----LTARTNFARSLAVYSVIGYILGLGDRHP 1951 (2105)
T ss_pred hhHHhhhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcCChhhH----HHHHHHHHHHHHHHHHHHHHccCCCcCC
Confidence 2345666666665544 4689999999999999999999999999
Q ss_pred CceeEcC-CCCEEEEeeccccCCCCC----CCCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHH
Q 003462 679 DNLLLRD-DGRLFHVDFGYILGRDPK----PFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFH 753 (818)
Q Consensus 679 dNIli~~-~G~lfHIDFG~ilg~~p~----pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~ 753 (818)
+|||||+ +||++|||||++++..|+ |+.||||||++|+++||+.+.| |.|+.+|+.+|.+||+|++.|+++++
T Consensus 1952 ~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg~~g~E--G~Fr~~c~~~~~~LRk~~~~L~~~le 2029 (2105)
T COG5032 1952 GNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVE--GSFRELCETAFRALRKNADSLMNVLE 2029 (2105)
T ss_pred ceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcCccchh--hHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999997 999999999999998876 4568999999999999999999 88999999999999999999999999
Q ss_pred HHccC------CCCCCcCCchHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhh
Q 003462 754 LMAGS------NIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQDLINESVSALFPQMVETIHRWAQY 816 (818)
Q Consensus 754 lm~~~------~ip~~~~~~~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq~ 816 (818)
+|+++ +.||....+..++.++.+||++++++.++..++.-+|++++.++.|..+|-.|..++|
T Consensus 2030 ~f~~d~l~~W~~~p~~~~~~~~~~~~v~~rf~~kl~~~~~~~~~~l~I~~sv~~li~~a~d~~~L~~~y 2098 (2105)
T COG5032 2030 LFVRDPLIEWRRLPCFREIQNNEIVNVLERFRLKLSEKDAEKFVDLLINKSVESLITQATDPFQLATMY 2098 (2105)
T ss_pred HHhcCcchhhhcCccccchHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHcCHHHHHhhc
Confidence 99999 8999886666778899999999999999999999999999999999999999999988
No 22
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=100.00 E-value=6.7e-55 Score=469.15 Aligned_cols=225 Identities=26% Similarity=0.488 Sum_probs=201.5
Q ss_pred EEEEecCcceeeccccceEEEEEEeCCCCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcC----CCccccccEEEEee
Q 003462 533 ITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATG 608 (818)
Q Consensus 533 i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~----ldL~l~~Y~Vlp~~ 608 (818)
|.+|.+ ++.|++|+++|++|+|+|+||+.|++|+|.|||||||++++|++++||.+|++++ +++.++||.|+|+|
T Consensus 1 I~~f~~-~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls 79 (280)
T cd05169 1 ISSFDP-VLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLS 79 (280)
T ss_pred CccccC-eEEEEeCCCCCeEEEEECCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecC
Confidence 345664 6999999999999999999999999999999999999999999999999999975 89999999999999
Q ss_pred CCCCeeeeec-CccHHHHHhhhh--------------------------------------------hHHHHHHHhCCCC
Q 003462 609 QDEGLLEFIP-SRSLAQILSEHR--------------------------------------------SIISYLQKFHPDE 643 (818)
Q Consensus 609 ~~~GlIE~V~-s~tl~~I~~~~~--------------------------------------------~l~~~l~~~~~~~ 643 (818)
+++||||||+ +.|+.+|+++++ .+.+|+...++++
T Consensus 80 ~~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~i~~~~~~~~l~~~~~~~~~~~ 159 (280)
T cd05169 80 PNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKSAPDYDNLTLIQKLEVFEYALNNTPGDDLRKILWLKSPSS 159 (280)
T ss_pred CCcceEEeCCCCchHHHHHHHHHHHcCCChhHHHHHHHHHhhhhhhhCCHHHHHHHHHHHHHhCCHHHHHHHHHHhCCCH
Confidence 9999999999 899999986532 1233444444443
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcC-CCCEEEEeeccccCCCC----CCCCCCccccHHHHHH
Q 003462 644 HGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-DGRLFHVDFGYILGRDP----KPFPPPMKLCKEMVEA 718 (818)
Q Consensus 644 ~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~-~G~lfHIDFG~ilg~~p----~pf~~PFrLT~~mv~~ 718 (818)
.. +..++++|++|||+|||+||||||||||++||||+. ||+++|||||++||.++ .|+.||||||++|+++
T Consensus 160 ~~----w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~ 235 (280)
T cd05169 160 EA----WLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNA 235 (280)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHH
Confidence 33 245799999999999999999999999999999996 99999999999998764 4678999999999999
Q ss_pred hCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003462 719 MGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 764 (818)
Q Consensus 719 mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 764 (818)
||+.+++ |.|+..|+.++.+||+|++.|++++++|+.+++-+|+
T Consensus 236 lG~~g~~--G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~ 279 (280)
T cd05169 236 LGVSGIE--GTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWR 279 (280)
T ss_pred hCCCCCC--CchHHHHHHHHHHHhcChHHHHHHHHHHHhCcccccc
Confidence 9999988 9999999999999999999999999999999999886
No 23
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=100.00 E-value=2.5e-54 Score=448.92 Aligned_cols=210 Identities=41% Similarity=0.709 Sum_probs=197.5
Q ss_pred ecCcceeeccccceEEEEEEeCCCCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhc-CCCccccccEEEEeeCCCCeee
Q 003462 537 VPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE-NLDLHLTPYNVLATGQDEGLLE 615 (818)
Q Consensus 537 ~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~-~ldL~l~~Y~Vlp~~~~~GlIE 615 (818)
..+.++|++|+++|++|+|+++||+.|.+|+|.|||||||++++|++++||.+|+++ ++++++++|.|+|+|+++|+||
T Consensus 4 ~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~~~~l~~~~y~vipls~~~GlIE 83 (219)
T cd00142 4 DVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKELGLDLFLTTYSVIPLSPRSGLIE 83 (219)
T ss_pred cCCceEEEcccCCCEEEEEEccCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCCCCCceEEeEEEEEecCCceEEE
Confidence 346899999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred eec-CccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcC-CCCEEEEe
Q 003462 616 FIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-DGRLFHVD 693 (818)
Q Consensus 616 ~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~-~G~lfHID 693 (818)
||+ +.|+. ..+.+|+...++++..+ .+++++|+.|||+||++||||||||||++||||++ +|+++|||
T Consensus 84 ~v~~~~sl~------~~l~~~~~~~~~~~~~~----~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hID 153 (219)
T cd00142 84 VVPGSVTLE------DDLSKWLKRKSPDEDEW----QEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHID 153 (219)
T ss_pred EeCCCchhH------HHHHHHHHHHCcCHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEe
Confidence 999 89998 56778999998886544 46899999999999999999999999999999997 99999999
Q ss_pred eccccCCCCC---CCCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccC
Q 003462 694 FGYILGRDPK---PFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGS 758 (818)
Q Consensus 694 FG~ilg~~p~---pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~ 758 (818)
||++||++|+ |+++|||||++|+++|||.+.+ |.|+..|++++.+||+|++.|++++++|+++
T Consensus 154 fg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~--g~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 154 FGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVF--GPFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred eHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchh--hhHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 9999999987 4789999999999999998755 9999999999999999999999999999864
No 24
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=100.00 E-value=1.1e-53 Score=444.36 Aligned_cols=212 Identities=26% Similarity=0.540 Sum_probs=196.8
Q ss_pred EEEecCcceeeccccceEEEEEEeCCCCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcC----CCccccccEEEEeeC
Q 003462 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQ 609 (818)
Q Consensus 534 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~----ldL~l~~Y~Vlp~~~ 609 (818)
.+|.+ .+.|++|+++|++|+|+++||+.|.+|+|.|||||||++++|++++||.+|++++ +++.++||.|+|+|+
T Consensus 2 ~~~~~-~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls~ 80 (222)
T cd05164 2 ASFDD-AVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLNS 80 (222)
T ss_pred ccccC-eeEEecccCCCEEEEEECCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcCC
Confidence 45664 6899999999999999999999999999999999999999999999999999987 999999999999999
Q ss_pred CCCeeeeec-CccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcC-CC
Q 003462 610 DEGLLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRD-DG 687 (818)
Q Consensus 610 ~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~-~G 687 (818)
++||||||+ +.|+..+ +.+|+.+.++++..++ .++++|+.|+|+||++||||||||||++||||+. +|
T Consensus 81 ~~GliE~v~~~~sl~~~------l~~~~~~~~~~~~~~~----~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG 150 (222)
T cd05164 81 RSGLIEWVEGTTTLKPV------LKKWFWLQFPDPEQWF----AARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETG 150 (222)
T ss_pred CCceEEEcCCcchHHHH------HHHHHHHHCcCHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCC
Confidence 999999999 8999855 5578888888876553 5799999999999999999999999999999996 99
Q ss_pred CEEEEeeccccCCCCC---CCCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccC
Q 003462 688 RLFHVDFGYILGRDPK---PFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGS 758 (818)
Q Consensus 688 ~lfHIDFG~ilg~~p~---pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~ 758 (818)
+++|||||++||.+++ |++||||||++|+++||+.+++ |.|+..|+.++.+||+|++.|++++++++.+
T Consensus 151 ~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~--G~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 151 EVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVE--GLFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred cEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcC--ChHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 9999999999998854 7889999999999999999887 9999999999999999999999999999753
No 25
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=100.00 E-value=1.9e-53 Score=456.89 Aligned_cols=223 Identities=23% Similarity=0.409 Sum_probs=201.9
Q ss_pred EEecCcceeeccccceEEEEEEeCCCCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEeeCC
Q 003462 535 GIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQD 610 (818)
Q Consensus 535 ~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~----~ldL~l~~Y~Vlp~~~~ 610 (818)
+|.+ ++.|+.|+++|++|+++|+||+.|.+|+|.|||||||+++||++++||.+|+++ ++++.+++|.|+|+|++
T Consensus 3 ~f~~-~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~~ 81 (279)
T cd05171 3 KFKD-VFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSPR 81 (279)
T ss_pred CccC-eEEEecCCCCCEEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCCC
Confidence 4554 588999999999999999999999999999999999999999999999999987 69999999999999999
Q ss_pred CCeeeeec-CccHHHHHhhhh--------------------------------------------hHHHHHHHhCCCCCC
Q 003462 611 EGLLEFIP-SRSLAQILSEHR--------------------------------------------SIISYLQKFHPDEHG 645 (818)
Q Consensus 611 ~GlIE~V~-s~tl~~I~~~~~--------------------------------------------~l~~~l~~~~~~~~~ 645 (818)
+||||||+ +.|+.+|++++. .+.+||.+.++++..
T Consensus 82 ~GLIe~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~f~~i~~~~~p~l~~~f~~~~~~~~~ 161 (279)
T cd05171 82 AGILEWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRKAMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFLDPQD 161 (279)
T ss_pred ceEEEECCCChhHHHHHHHhhhcccccCccchhHHHHHHHHHHhhcCCHHHHHHHHHHHHHhCcHHHHHHHHHHCcCHHH
Confidence 99999999 899999976531 123455555655443
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEc-CCCCEEEEeeccccCCCC---CCCCCCccccHHHHHHhCC
Q 003462 646 PFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDFGYILGRDP---KPFPPPMKLCKEMVEAMGG 721 (818)
Q Consensus 646 ~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~-~~G~lfHIDFG~ilg~~p---~pf~~PFrLT~~mv~~mGg 721 (818)
| -.+++||++|||+||++||||||||||++||||+ .||+++|||||++||.++ .|+.||||||++|+++||+
T Consensus 162 ~----~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg~ 237 (279)
T cd05171 162 W----FERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMGI 237 (279)
T ss_pred H----HHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhCC
Confidence 3 3579999999999999999999999999999999 599999999999999874 5788999999999999999
Q ss_pred CCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003462 722 AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 764 (818)
Q Consensus 722 ~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 764 (818)
.+++ |.|+..|+.++.+||++++.|++++++|+.+++-+|+
T Consensus 238 ~g~~--g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 238 TGVE--GVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred CCCc--chHHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 9998 9999999999999999999999999999999998886
No 26
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.4e-53 Score=476.44 Aligned_cols=250 Identities=30% Similarity=0.585 Sum_probs=230.4
Q ss_pred eEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccHHHHHhhhh---hHHHHHH
Q 003462 562 TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHR---SIISYLQ 637 (818)
Q Consensus 562 ~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~~~~---~l~~~l~ 637 (818)
..++|+|.||||||+.++.|+|..|..||.++|.++|++||+|+.||.+.||||.|+ ++|+++|.+... .+..||.
T Consensus 587 L~SVIVKtGdDLrQE~fA~Qli~~f~~IW~EegvplWlRpykIlvtss~sGLIEtI~da~SIHsIKk~l~~~~~l~~F~~ 666 (847)
T KOG0903|consen 587 LRSVIVKTGDDLRQELFAYQLISAFKDIWQEEGVPLWLRPYKILVTSSDSGLIETIVDAMSIHSIKKRLPNLASLRHFFA 666 (847)
T ss_pred eEEEeeecCchHHHHHHHHHHHHHHHHHHHHcCCcceeeeEEEEEEecCccceeeccchhhHHHHHHhcchhhhHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999 999999998743 3555666
Q ss_pred HhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccccCCCCCC---CCCCccccHH
Q 003462 638 KFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP---FPPPMKLCKE 714 (818)
Q Consensus 638 ~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~~p~p---f~~PFrLT~~ 714 (818)
.+.+-.+..| ..|++||+.||||||++||+|+|+||||+|||||..||++||||||+|++.|.. +.+|||||.|
T Consensus 667 ~~g~~NS~~y---k~AQrNFvqSlagYSLvcYlLQvKDRHNGNILiD~EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~E 743 (847)
T KOG0903|consen 667 AFGKPNSEKY---KSAQRNFVQSLAGYSLVCYLLQVKDRHNGNILIDEEGHIIHIDFGFMLSNSPGNVGFESAPFKLTTE 743 (847)
T ss_pred HhCCCCcHHH---HHHHHHHHHHHHHHHHHHHhhhcccccCCceEecCCCCEEEEeeeeEecCCCCCcccccCchhhHHH
Confidence 5543322222 568999999999999999999999999999999999999999999999999974 4689999999
Q ss_pred HHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHcc-CCCCCCcCCchHHHHHHHHHcCCCCCHHHHHHHHHH
Q 003462 715 MVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAG-SNIPDIASDPEKGILKLQEKFRLDLDDEACVHFFQD 793 (818)
Q Consensus 715 mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~-~~ip~~~~~~~~~i~~l~~~l~l~lsdeeA~~~f~~ 793 (818)
++++|||.+++.|..|+.+|.++|.++|||++-|+.|+++|.+ +++||+...+ .+++++++||++++||||+..++..
T Consensus 744 ylEvmgG~~~d~FdyfK~L~l~gf~a~RKhadrIv~lvEiMq~~S~~pCF~aG~-~Ti~nL~~RFhLslTEeq~~~lV~~ 822 (847)
T KOG0903|consen 744 YLEVMGGLDSDMFDYFKSLMLQGFMALRKHADRIVLLVEIMQDGSGMPCFRAGE-RTIQNLRQRFHLSLTEEQCQDLVLS 822 (847)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccCh-HHHHHHHHHhcccccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987 8999999764 4899999999999999999999999
Q ss_pred HHHHHHhchhHHHHHHHHHHHh
Q 003462 794 LINESVSALFPQMVETIHRWAQ 815 (818)
Q Consensus 794 lI~~s~~s~~t~~~d~~H~~aq 815 (818)
||+.|+++++|++||.++.+.+
T Consensus 823 LI~kS~~S~~TrlYD~fQyitn 844 (847)
T KOG0903|consen 823 LISKSLDSITTRLYDSFQYITN 844 (847)
T ss_pred HHhhcccchhhhhhHHHHHHhc
Confidence 9999999999999999988764
No 27
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=100.00 E-value=3.4e-51 Score=444.70 Aligned_cols=224 Identities=21% Similarity=0.435 Sum_probs=196.0
Q ss_pred EEEecCcceeeccccceEEEEEEeCCCCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEeeC
Q 003462 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQ 609 (818)
Q Consensus 534 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~----~ldL~l~~Y~Vlp~~~ 609 (818)
.+|.+ ++.|++|+++|++|+|.|+||+.|.||+|.|||||||+++||++++||.+|+++ ++++.++||.|+|+++
T Consensus 2 ~~f~~-~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~ 80 (307)
T cd05170 2 ESVGS-TVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGP 80 (307)
T ss_pred ccccC-eEEEEecCCCceEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCC
Confidence 45554 688999999999999999999999999999999999999999999999999986 4799999999999999
Q ss_pred CCCeeeeec-CccHHHHHhhhh---------------------------------hHHHHHHHh----------------
Q 003462 610 DEGLLEFIP-SRSLAQILSEHR---------------------------------SIISYLQKF---------------- 639 (818)
Q Consensus 610 ~~GlIE~V~-s~tl~~I~~~~~---------------------------------~l~~~l~~~---------------- 639 (818)
++||||||+ +.|+.+|++++. .+...+.+.
T Consensus 81 ~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 160 (307)
T cd05170 81 RSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSVL 160 (307)
T ss_pred CcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHHH
Confidence 999999999 899999876421 011111111
Q ss_pred -----------------------CCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEc-CCCCEEEEeec
Q 003462 640 -----------------------HPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDFG 695 (818)
Q Consensus 640 -----------------------~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~-~~G~lfHIDFG 695 (818)
++++.. +-.++++|++|||+||++||||||||||++||||+ .||+++|||||
T Consensus 161 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~----w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~ 236 (307)
T cd05170 161 RQVLDELMQETPKDLLARELWCSSTTSSE----WWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYN 236 (307)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCCHHH----HHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeH
Confidence 111111 22468999999999999999999999999999999 69999999999
Q ss_pred cccCCCC---CCCCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003462 696 YILGRDP---KPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 764 (818)
Q Consensus 696 ~ilg~~p---~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 764 (818)
++||.++ .|+.||||||++|+++||+.+.+ |.|+..|+.++.+||++++.|+++++.++.+++-+|+
T Consensus 237 ~~f~~~~~l~~pE~VPFRLT~~~~~~lg~~g~~--G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~ 306 (307)
T cd05170 237 VCFEKGKSLRIPEKVPFRMTQNIETALGLTGVE--GVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWT 306 (307)
T ss_pred hhhcccCCCCCCCCCCeeeCHHHHHHhCCCCCc--hhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCcccccc
Confidence 9998763 57889999999999999999987 9999999999999999999999999999999999986
No 28
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=100.00 E-value=1.2e-50 Score=416.52 Aligned_cols=191 Identities=48% Similarity=0.835 Sum_probs=179.9
Q ss_pred EEEEEeCCCcchhHHHHHHHHHHHHHHhhcC----CCccccccEEEEeeCCCCeeeeec-CccHHHHHhhhhhHHHHHHH
Q 003462 564 KMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEHRSIISYLQK 638 (818)
Q Consensus 564 ~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~----ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~~~~~l~~~l~~ 638 (818)
.+|+|.|||||||++++|++++||.+|++++ +++.++||+|+|+|+++|+||||+ +.|+.+| +.+|+.+
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------l~~~~~~ 74 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------LYDWFKK 74 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH------HHHHHHH
Confidence 3799999999999999999999999999997 999999999999999999999999 8999999 8899999
Q ss_pred hCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccccCCCCCC----CCCCccccHH
Q 003462 639 FHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP----FPPPMKLCKE 714 (818)
Q Consensus 639 ~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~~p~p----f~~PFrLT~~ 714 (818)
.++++..+ .+++++|++|||+||++||||||||||++||||+++|+++|||||++||++|+. ++||||||++
T Consensus 75 ~~~~~~~~----~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~ 150 (202)
T smart00146 75 KFPDPEDY----FEARKNFTRSCAGYSVITYILGLGDRHNDNIMLDKTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPE 150 (202)
T ss_pred HCcCHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEeCCCCEEEEechhhhCccccCCCCCCCCCeecCHH
Confidence 99887643 468999999999999999999999999999999999999999999999999763 7789999999
Q ss_pred HHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCC
Q 003462 715 MVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 766 (818)
Q Consensus 715 mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~ 766 (818)
|+++||+.+.+ |.|+..|+.++.+||+|++.|++++++|+.+++|+|...
T Consensus 151 ~~~~lg~~~~~--g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~d~l~~~~~~ 200 (202)
T smart00146 151 MVDVMGDSGYF--GLFRSLCERALRALRKNSNLIMSLLELMLYDGLPDWRSG 200 (202)
T ss_pred HHHHhCCCccc--chHHHHHHHHHHHHHcCHHHHHHHHHHHcCCCChhhcCC
Confidence 99999976654 999999999999999999999999999999999999864
No 29
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=100.00 E-value=1.1e-49 Score=395.86 Aligned_cols=167 Identities=38% Similarity=0.662 Sum_probs=160.4
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhcCCCC
Q 003462 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV 366 (818)
Q Consensus 287 ~~~~~l~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~~~~~~aLeLL~~~ 366 (818)
++|++|+.|+.+||++.||++||++||+||++|.++|+||||||+||+|+++.++++|+++|.+|++++|+|||||||+.
T Consensus 2 ~~~~~l~~i~~~~pl~~L~~eek~llW~~R~~~~~~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLeLL~~~ 81 (171)
T cd00872 2 EEREQLEAIIARDPLSELTEEDKELLWKLRHECRKKPQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALELLDCN 81 (171)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcCchhhhHHHhhhhhhccCchhhhhhHH
Q 003462 367 FESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFYS 446 (818)
Q Consensus 367 f~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~~ 446 (818)
|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.+..||
T Consensus 82 f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~ds~La~FLl~Ral~n~~igh~lfW~L~~E~~~~~~~~R~-- 159 (171)
T cd00872 82 FPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLKYEPYHDSDLVRFLLKRALRNQRIGHFFFWHLRSEMHNPSVSQRF-- 159 (171)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccCCHHHHHHHHHHhcCHHHHHHHHHHHHHhhcChHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999876665
Q ss_pred HHHHHHHHHHh
Q 003462 447 THEILEESMMK 457 (818)
Q Consensus 447 ~~~~l~~~~~~ 457 (818)
+.+++.++.
T Consensus 160 --~~~le~~l~ 168 (171)
T cd00872 160 --GLLLEAYLR 168 (171)
T ss_pred --HHHHHHHHh
Confidence 666776664
No 30
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=100.00 E-value=9.8e-50 Score=395.30 Aligned_cols=159 Identities=58% Similarity=0.953 Sum_probs=156.9
Q ss_pred ccCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhh
Q 003462 279 DRDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCD 358 (818)
Q Consensus 279 d~d~kp~~~~~~~l~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~~~~~~ 358 (818)
|+++||+++++++|+.|+.+||++.||++||++||+||+++.++|+|||+||+||+|+++.++++|+++|.+|++++|++
T Consensus 1 ~~~~~P~~~~~~~L~~i~~~~p~~~L~~~ek~llW~~R~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~ 80 (166)
T cd00870 1 DKDLKPNSKERKELNKILKYPPTTKLTDEEKDLIWKFRFYLTNNKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIED 80 (166)
T ss_pred CCCCCcCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhHHHHhhCcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcccc-------chhhHHHHHHHHhhcCchhhhHHHhhh
Q 003462 359 ALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERS-------DKSRLSQFLVQRSSHNIELASFLRWYV 431 (818)
Q Consensus 359 aLeLL~~~f~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~~-------~~s~L~~fLi~ra~~n~~i~~~l~W~L 431 (818)
|||||++.|+|+.||+|||++|++++|++|.+||||||||||||++ ++|+|++|||+||++|++|||+|||+|
T Consensus 81 aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLKyE~~~~~~~~~~~s~La~fLl~Ral~s~~ig~~lfW~L 160 (166)
T cd00870 81 ALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALKYENLDLSPLPRLDSPLADFLIERALKNPKLANFLYWYL 160 (166)
T ss_pred HHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred hhhccC
Q 003462 432 SVEFHD 437 (818)
Q Consensus 432 ~~e~~~ 437 (818)
++|++|
T Consensus 161 k~E~~d 166 (166)
T cd00870 161 KVELED 166 (166)
T ss_pred hhhccC
Confidence 999986
No 31
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1e-47 Score=473.71 Aligned_cols=440 Identities=19% Similarity=0.329 Sum_probs=325.0
Q ss_pred CCCCCCHhhHhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcCc--hhhhHH
Q 003462 350 RWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNI--ELASFL 427 (818)
Q Consensus 350 ~W~~~~~~~aLeLL~~~f~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~~~~s~L~~fLi~ra~~n~--~i~~~l 427 (818)
.|++....|-... .-..+-+.--+++..++...+..-+.||+-.+.+-.. +.++-| ++-+.+- ...++-
T Consensus 1858 ~~ek~~r~ei~s~-----~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRicH~~~---dV~~vl-~~II~~l~~~YPqq~ 1928 (2382)
T KOG0890|consen 1858 SVEKAPRGEIVSK-----NLKLINSLIEEALEHLPTYQFYTAYSQLLSRICHPNQ---DVARVL-KHIIAKLVLAYPQQT 1928 (2382)
T ss_pred ccccCChhhhhhh-----hHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcCCch---HHHHHH-HHHHHHHHHhCchHH
Confidence 4555555555444 1123455556688999999999999999999998754 333322 2222222 578889
Q ss_pred HhhhhhhccCchhhhhhHHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhccCCCChhHHHHHHHH
Q 003462 428 RWYVSVEFHDPVHAKRFYSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQTELTAQLCSIMRDVGNVRGNTQKKIEKLRQ 507 (818)
Q Consensus 428 ~W~L~~e~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~~~~~~L~~i~~~vk~~~~~~~~k~e~L~~ 507 (818)
.|++.+-++.....++ .++..+++..+. .+. ..-+.+..+..+.++|.+++..=...+.....-...+++
T Consensus 1929 lW~~~a~~kS~~p~R~--~R~keIL~k~~~----~~~----~~~~l~~da~~lTe~L~~lcn~~v~~ss~~~sl~t~F~k 1998 (2382)
T KOG0890|consen 1929 LWQSAALSKSNVPSRV--ERCKEILTKSRR----QKP----DYKKLLSDAYDLTEKLTNLCNKKVNSSSKVLSLKTDFRK 1998 (2382)
T ss_pred HHHHHHHHhcccHHHH--HHHHHHHHHHHh----cCc----cHHHHHHHHHHHHHHHHHHhcCCCCcccccccHHHHHHH
Confidence 9999887765442221 223444443331 111 122345577889999999976432221111000112332
Q ss_pred HHH-----hhhcccc--------cCCC--CcccCCCCcE----EEEEEecCcceeeccccceEEEEEEeCCCCeEEEEEE
Q 003462 508 LLS-----GLLSELT--------YFEE--PIRSPLAPNI----LITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFK 568 (818)
Q Consensus 508 ~L~-----~~~~~l~--------~~~~--~~~lPl~p~~----~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K 568 (818)
+.. +..-.+. .++. .=..|..|-. .|.||. ++++|+.|.++|++|+++|+||+.|.+|+|
T Consensus 1999 l~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~~~~~~IsgF~-d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCK 2077 (2382)
T KOG0890|consen 1999 LVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQSHLPYISGFS-DEVKILNSLQKPKKIKLRGSDGKIYPFLCK 2077 (2382)
T ss_pred hccccChhhhhhhHhhhcccccccccCcccccCCCCCCCCcchhhhcch-HHHHHHHhccCCeEEEEEcCCCCEeEEEeC
Confidence 211 1100000 0000 0011222222 478887 689999999999999999999999999999
Q ss_pred eCCCcchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEeeCCCCeeeeec-CccHHHHHhh-h-------------
Q 003462 569 KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSE-H------------- 629 (818)
Q Consensus 569 ~gDDLRqD~lvlQli~lmd~ll~~~----~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~~-~------------- 629 (818)
..||||+|.+.|++-.+||++|+|+ .+.|+++||.|+|++.+||+||||| ..++++|+.+ |
T Consensus 2078 pKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLneeCGiIEWv~nt~slR~IL~klY~~rg~~~~~~~l~ 2157 (2382)
T KOG0890|consen 2078 PKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNEECGIIEWVPNTASLREILDKLYMTRGKWMIKKQLR 2157 (2382)
T ss_pred chhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCCccceEEecCCcchHHHHHHHHHHhccccchhhHHH
Confidence 9999999999999999999999996 4789999999999999999999999 7789988754 1
Q ss_pred --------------------------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeE
Q 003462 630 --------------------------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLL 683 (818)
Q Consensus 630 --------------------------~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli 683 (818)
...++||...+|+|.+|| .+|.+|++|.|++|++|||||+||||.+|||+
T Consensus 2158 ~~~~~~~~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW~----~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILF 2233 (2382)
T KOG0890|consen 2158 SVHLKKQMAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSWF----ASRNNYARTTAVMSMVGYILGLGDRHGENILF 2233 (2382)
T ss_pred HhcCcHhhcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHHH----HHHHHHHHHHHHHHHHHHHhcCccccccceee
Confidence 135789999999998886 57999999999999999999999999999999
Q ss_pred c-CCCCEEEEeeccccCCC---CCCCCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCC
Q 003462 684 R-DDGRLFHVDFGYILGRD---PKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSN 759 (818)
Q Consensus 684 ~-~~G~lfHIDFG~ilg~~---p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ 759 (818)
| .||..+|+||.++|+++ ++|+.||||||+|||+|||+.|.| |.|+..|+.+++.+|+|.+.++++++-++.++
T Consensus 2234 Ds~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~E--G~Frk~cEiTLrLlR~n~e~LMSiL~tF~~DP 2311 (2382)
T KOG0890|consen 2234 DSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLE--GSFRKVCEITLRLLRKNRETLMSILETFVYDP 2311 (2382)
T ss_pred ecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccc--hhHHHHHHHHHHHHHhcchhHHHHHHHHHhCc
Confidence 9 69999999999999987 679999999999999999999999 99999999999999999999999999999999
Q ss_pred CCCCcCCc-----------hHHHHHHHHHcCCCC----CHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhhc
Q 003462 760 IPDIASDP-----------EKGILKLQEKFRLDL----DDEACVHFFQDLINESVSALFPQMVETIHRWAQYW 817 (818)
Q Consensus 760 ip~~~~~~-----------~~~i~~l~~~l~l~l----sdeeA~~~f~~lI~~s~~s~~t~~~d~~H~~aq~~ 817 (818)
+-+|+..- ...|..++.|++--+ -.=....+...||++|++- -++-.|.=.|+.||
T Consensus 2312 lvew~~~~k~~s~~~i~e~~~~i~~i~~rlqG~~~~~glPLSveGq~~~LI~eATse--enL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2312 LVEWNRPSKGRSPKKINEDRLVIGRIRGRLQGAMKVDGLPLSVEGQASSLIEEATSE--ENLSEMYIGWMPFL 2382 (2382)
T ss_pred hhhccCcccCCCcCcccchHHHHhHHHHHHhccCcCCCCccchhhHHHHHHHHhcCH--HHHHHHHhhhhccC
Confidence 88887432 234666777877411 1112334668999999886 56777888888876
No 32
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=100.00 E-value=1.2e-46 Score=398.56 Aligned_cols=225 Identities=19% Similarity=0.265 Sum_probs=204.7
Q ss_pred EEEecCcceeeccccceEEEEEEeCCCCeEEEEEE--eCCCcchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEe
Q 003462 534 TGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFK--KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLAT 607 (818)
Q Consensus 534 ~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K--~gDDLRqD~lvlQli~lmd~ll~~~----~ldL~l~~Y~Vlp~ 607 (818)
.++.|+-..|.+|+++|++|++.|+||+.|.+++| .++|+|+|++++|++++||.+|+++ ++++.+++|.|+|+
T Consensus 2 ~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viPL 81 (253)
T cd05163 2 ERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVPL 81 (253)
T ss_pred cccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEEc
Confidence 45667656678899999999999999999999999 5689999999999999999999865 47899999999999
Q ss_pred eCCCCeeeeec-CccHHHHHhh--------------hhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc
Q 003462 608 GQDEGLLEFIP-SRSLAQILSE--------------HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILG 672 (818)
Q Consensus 608 ~~~~GlIE~V~-s~tl~~I~~~--------------~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLG 672 (818)
++++|||||++ ..|+.+|+.. ...+.+|+.+.++++..|| .++++|++|+|++|+++||||
T Consensus 82 s~~~gLie~~~~~~tl~~i~~~~~~~~~~i~~~~~p~~~l~~~~~~~~~~~~~~~----~~r~~ft~s~A~~s~~gYilg 157 (253)
T cd05163 82 SPQIRLVEDDPSYISLQEIYEDKLEIYNEIQKDMVPDTILKNYILSTFPTYQDYW----LFRKQFTYQLALLSFMTYILS 157 (253)
T ss_pred CCccceEEECCCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999 8999988852 1247889999888876654 468999999999999999999
Q ss_pred cCCCCCCceeEc-CCCCEEEEeeccccCCC----CCCCCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchH
Q 003462 673 IGDRHLDNLLLR-DDGRLFHVDFGYILGRD----PKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNL 747 (818)
Q Consensus 673 IGDRH~dNIli~-~~G~lfHIDFG~ilg~~----p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~ 747 (818)
+||||++||||+ .||+++|||||+.|++. +.|++||||||++|+++||..+.+ |.|+..|+.++.+||++...
T Consensus 158 lgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g~~g~e--G~f~~~~~~~~~~Lr~~~~~ 235 (253)
T cd05163 158 INNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIGPIGLE--GILTSSMMAIARCLTEPEFD 235 (253)
T ss_pred CCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhCCcCcC--CcHHHHHHHHHHHHhcCHHH
Confidence 999999999999 59999999999999875 468899999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHccCCCCCCc
Q 003462 748 ILNLFHLMAGSNIPDIA 764 (818)
Q Consensus 748 il~l~~lm~~~~ip~~~ 764 (818)
++++++.++.+++-+|.
T Consensus 236 l~~~L~~fi~Dpl~~W~ 252 (253)
T cd05163 236 LENALQLFIRDELIAWH 252 (253)
T ss_pred HHHHHHHHHcChhhhhc
Confidence 99999999999998875
No 33
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=100.00 E-value=1.3e-46 Score=380.15 Aligned_cols=176 Identities=43% Similarity=0.727 Sum_probs=157.1
Q ss_pred cCCCCChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhH
Q 003462 280 RDLKPSNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDA 359 (818)
Q Consensus 280 ~d~kp~~~~~~~l~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~~~~~~a 359 (818)
+|+||+.+++++|++|+++||+..|+++||+++|++|+++.++|+|||+||+||+|+++.++++++++|..|++++|++|
T Consensus 1 ~~~~p~~~~~~~L~~i~~~~p~~~L~~~ek~~lW~~R~~l~~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A 80 (184)
T PF00613_consen 1 KDLKPNEEERDQLEAIINKDPLQELTEEEKELLWKYRYYLMNNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA 80 (184)
T ss_dssp -TS---HHHHHHHHHHHTS-TTSSS-HHHHHHHHHTHHHHTTSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH
T ss_pred CCCCcCHHHHHHHHHHHhcCCCccCCHHHHHHHHHCCHHhhhCchHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcCchhhhHHHhhhhhhccCch
Q 003462 360 LELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV 439 (818)
Q Consensus 360 LeLL~~~f~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~ 439 (818)
|+||+++|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.
T Consensus 81 L~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr~e~~~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~~~~~ 160 (184)
T PF00613_consen 81 LELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQALRYEPYHDSPLARFLLRRALKSPRIAHQLFWYLKAELHDPE 160 (184)
T ss_dssp HHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGGGSSSSS-HHHHHHHHHHHHSHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHheeccccccHHHHHHHHHHHhCHHHHHHHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHhhC
Q 003462 440 HAKRFYSTHEILEESMMKLT 459 (818)
Q Consensus 440 ~~~~~~~~~~~l~~~~~~~l 459 (818)
+..++ ..+++.++..+
T Consensus 161 ~~~r~----~~~~~~~l~~~ 176 (184)
T PF00613_consen 161 YSERY----QLLLEAFLDGC 176 (184)
T ss_dssp HHHHH----HHHHHHHHHHS
T ss_pred HHHHH----HHHHHHHHHHH
Confidence 76665 55666666543
No 34
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=100.00 E-value=1.9e-46 Score=370.48 Aligned_cols=164 Identities=35% Similarity=0.479 Sum_probs=153.6
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccc-cCCCHHHHHHHHHHhcCCCCCCHhhHhhcCCC
Q 003462 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSV-EWSDVQEAKQALELMGRWEMIDVCDALELLSP 365 (818)
Q Consensus 287 ~~~~~l~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV-~W~~~~e~~~a~~lL~~W~~~~~~~aLeLL~~ 365 (818)
+++++|+.|+.+||+..||++||++||++|++|.++|+|||+||+|| +|++ .++.+++++|..|+|++|++|||||++
T Consensus 2 ~~~~~L~~i~~~~p~~~l~~~ek~llW~~R~~~~~~p~aLp~~L~s~~~w~~-~~~~e~~~LL~~W~p~~p~~ALeLL~~ 80 (169)
T cd00869 2 ETQEKLLDLIQKQSTYTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDW-ANLMDVYQLLHQWAPLRPLIALELLLP 80 (169)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHHhcccCcH-HHHHHHHHHHhCCCCCCHHHHHHHcCC
Confidence 46889999999999999999999999999999999999999999987 5764 679999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcCchhhhHHHhhhhhhccCchhhhhhH
Q 003462 366 VFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKRFY 445 (818)
Q Consensus 366 ~f~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~~~ 445 (818)
.|+|+.||+|||++|++++||+|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.+..+
T Consensus 81 ~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLkyE~~~~s~L~~FLl~RAl~n~~i~h~lfW~Lk~e~~~~~~~~~-- 158 (169)
T cd00869 81 KFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALKFELYLKSALVRFLLSRSLVSLRFAHELYWLLKDALDDCYFSSA-- 158 (169)
T ss_pred cCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccccCcChHHHHHHHHHhcCHHHHHHHHHHhHHHccCchHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986544
Q ss_pred HHHHHHHHHH
Q 003462 446 STHEILEESM 455 (818)
Q Consensus 446 ~~~~~l~~~~ 455 (818)
|+.+.+.+
T Consensus 159 --~~~l~~a~ 166 (169)
T cd00869 159 --YQDLGAAL 166 (169)
T ss_pred --HHHHHHHH
Confidence 45555544
No 35
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=100.00 E-value=1.4e-45 Score=371.71 Aligned_cols=169 Identities=47% Similarity=0.753 Sum_probs=160.0
Q ss_pred ChHHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhh-hccchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhcC
Q 003462 285 SNAERKSIQRILKYPPTRTLSGDEKQLLWKFRFSL-MSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELL 363 (818)
Q Consensus 285 ~~~~~~~l~~i~~~~p~~~L~~~ek~llW~~R~~l-~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~~~~~~aLeLL 363 (818)
+.+++++|+.|+++||+..|+++||+++|++|+++ .++|+||||||+||+|+++.|+++++++|..|++++|++|||||
T Consensus 4 ~~~~~~~l~~i~~~~p~~~l~~eek~llW~~R~~~l~~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~LL 83 (184)
T smart00145 4 NIEERDRLEAILKLDPTYELTAEEKDLIWKFRHYYLTNNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALELL 83 (184)
T ss_pred CHHHHHHHHHHHhCCCcccCCHHHHHHHHHChHHHHhcChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 67889999999999999999999999999999776 58999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcCchhhhHHHhhhhhhccCchhhhh
Q 003462 364 SPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPVHAKR 443 (818)
Q Consensus 364 ~~~f~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~~~~~ 443 (818)
++.|+|+.||+|||++|++++||+|.+||||||||||||++++|+|++|||+||++|++|||+|||+|++|++++.+..|
T Consensus 84 ~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr~E~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~~~~~~r 163 (184)
T smart00145 84 SPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALKYEPYLDSALARFLLERALKNQRLGHFFYWYLKSELEDPHYSIR 163 (184)
T ss_pred CccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHccCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887666
Q ss_pred hHHHHHHHHHHHHh
Q 003462 444 FYSTHEILEESMMK 457 (818)
Q Consensus 444 ~~~~~~~l~~~~~~ 457 (818)
| ..+++.++.
T Consensus 164 ~----~~~le~~l~ 173 (184)
T smart00145 164 F----GLLLEAYLR 173 (184)
T ss_pred H----HHHHHHHHH
Confidence 5 556666664
No 36
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=100.00 E-value=9.7e-46 Score=387.71 Aligned_cols=199 Identities=35% Similarity=0.636 Sum_probs=162.9
Q ss_pred eEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeec-CccHHHHHhhh-----------
Q 003462 562 TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIP-SRSLAQILSEH----------- 629 (818)
Q Consensus 562 ~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~tl~~I~~~~----------- 629 (818)
.|++|||.|||||||++++|++++||.+|++++...++++|.|+|+++++|+||||+ +.|+.+|..++
T Consensus 1 ~y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~ 80 (235)
T PF00454_consen 1 EYSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNP 80 (235)
T ss_dssp -EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC-
T ss_pred CceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhcccccccccccccc
Confidence 489999999999999999999999999999999999999999999999999999999 78999999874
Q ss_pred ------------------hhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEc-CCCCEE
Q 003462 630 ------------------RSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLF 690 (818)
Q Consensus 630 ------------------~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~-~~G~lf 690 (818)
..+.+||...+++...+ .+++++|++|+|+||+++||||+||||++||||+ ++|+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~----~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~~g~~~ 156 (235)
T PF00454_consen 81 SRKYKAKLFEKQSSKVPKDGLRQYFLKSFPSAEEW----FEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKKTGELI 156 (235)
T ss_dssp -----------------TTHHHHHHHHHSCTTHHH----HHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ETTSEEE
T ss_pred ccccccccccccccccccchHHHHHHhcCCChhhh----HhhhHhhHHHHHHHhhceEEEeecCCCchhheeccccceee
Confidence 24678888888776433 3579999999999999999999999999999995 899999
Q ss_pred EEeeccccC--CCCCCCCCCccccHHHHHHhCC--CCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003462 691 HVDFGYILG--RDPKPFPPPMKLCKEMVEAMGG--AESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 764 (818)
Q Consensus 691 HIDFG~ilg--~~p~pf~~PFrLT~~mv~~mGg--~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 764 (818)
|||||++|| ..++|+.||||||++|+++||| .....+|.|+..|+.++.+||+|.+.|++++++|+.+++++|+
T Consensus 157 hIDfg~~f~~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll~~~~~d~l~~w~ 234 (235)
T PF00454_consen 157 HIDFGFIFGGKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLLELFLRDPLIDWR 234 (235)
T ss_dssp E--HSSCTTHHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTSCSTTSS
T ss_pred eEEeHHhhhccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHHHHHHhCCCCCCC
Confidence 999999999 6678999999999999999955 4444569999999999999999999999999999999999997
No 37
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=100.00 E-value=1.2e-44 Score=405.22 Aligned_cols=267 Identities=24% Similarity=0.405 Sum_probs=215.0
Q ss_pred CCCCcccCCCCcEEEEEEecCcceeeccc-cceEEEEEEe----------------------------------------
Q 003462 519 FEEPIRSPLAPNILITGIVPSESSIFKSA-LHPLRLTFRT---------------------------------------- 557 (818)
Q Consensus 519 ~~~~~~lPl~p~~~i~~i~~~~~~v~~S~-~~P~~l~f~~---------------------------------------- 557 (818)
.+.|+..|++|++.++.|+...++|+.|+ .+|-|+.|.+
T Consensus 934 ~~~pil~pf~~~ivl~~i~l~gikv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1374)
T PTZ00303 934 LPHPILNPFKPYIVLKSIRLSGVKVAPNAASKPTWLAFSTWSAAEHLERDTMTAANNFGAHTLPTGESHAERSGEGREKG 1013 (1374)
T ss_pred CCcccccCCCcceeEEeeeccCeEeccccccCcchhhccchhhhhhhhhhcccccccccccccccccchhhhcccccccc
Confidence 34688999999999999999999999997 7788777643
Q ss_pred ----------------------CCCC-----------eEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEE
Q 003462 558 ----------------------ASGG-----------TCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNV 604 (818)
Q Consensus 558 ----------------------~dg~-----------~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~V 604 (818)
.+|. .|.+|||+| ||||||+++|||++||+||+++++||+|+||+|
T Consensus 1014 ~~~~~~~~~~~~~~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~g-DLRQDQLVLQmIrLMDrLLKkEnLDLKLTPYRV 1092 (1374)
T PTZ00303 1014 TGAAKTYTSTKTSAPVTSPVTAVNGVSPESLHDSLPQECMFLYKRE-NVERDQLMCISSRLLQMLLSSEIGNAEMLDYSV 1092 (1374)
T ss_pred cCCCccccccccccceeeeeeccCCcCccccccccchheeEEEecC-cHHHHHHHHHHHHHHHHHHHhcCCCccccceEE
Confidence 1232 389999995 999999999999999999999999999999999
Q ss_pred EEeeCCCCeeeeecCccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEc
Q 003462 605 LATGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR 684 (818)
Q Consensus 605 lp~~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~ 684 (818)
+|||.+.||||+|++.++++|.+ ..|.+||+..+ ...++||++|||||||+||||||||||+|||||+
T Consensus 1093 LATG~dsGLIEfVps~tLAsI~~--~~Il~YLr~~~----------t~~~~NFi~S~AGYsViTYILgIgDRHngNILId 1160 (1374)
T PTZ00303 1093 LPLSCDSGLIEKAEGRELSNLDN--MDIASYVLYRG----------TRSCINFLASAKLFLLLNYIFSIGDRHKGNVLIG 1160 (1374)
T ss_pred EeccCCcccEEEecchHHHHhhh--hHHHHHHHhcC----------cHHHHHHHHHHHHHHHHHHHhccCcccCCceeEc
Confidence 99999999999999889999975 45999998421 1246899999999999999999999999999999
Q ss_pred CCCCEEEEeeccccCCCC---CCCCCCccccHHHHHHhCCCC-----------------------------------c--
Q 003462 685 DDGRLFHVDFGYILGRDP---KPFPPPMKLCKEMVEAMGGAE-----------------------------------S-- 724 (818)
Q Consensus 685 ~~G~lfHIDFG~ilg~~p---~pf~~PFrLT~~mv~~mGg~~-----------------------------------s-- 724 (818)
++||+||||||||||.++ |.-++|+|+...|++++|+.. +
T Consensus 1161 ~dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~~q~~~~~~~~~~~~~~~~~~~~g~~s~~~~s~~~~~~~pa 1240 (1374)
T PTZ00303 1161 TNGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQCQQRQCSCFAGPSPAATSSRARGCASPPGSSGSGGCGSPA 1240 (1374)
T ss_pred CCCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHHHHhhhcccccCCCCccccccccCCCCCCCCCCCCCcCCCC
Confidence 999999999999999886 566789999999977644211 1
Q ss_pred -----------cccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchHHHHHHHH-HcCCCCCHHHHHHHHH
Q 003462 725 -----------QYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKLQE-KFRLDLDDEACVHFFQ 792 (818)
Q Consensus 725 -----------~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l~~-~l~l~lsdeeA~~~f~ 792 (818)
+.-..|......-|...|-++..+..|+.-.+...--+.+ +..+..+.+ -|.-+.+++.+...|.
T Consensus 1241 ~p~~~~e~ss~~~~~~f~~~aa~wf~~vrp~a~i~~~l~~~~v~r~~~~~~---~~e~~~~~nt~f~r~as~~s~~~~f~ 1317 (1374)
T PTZ00303 1241 SPTKAPEPSSAEIREAFFSSAAEWFVHVRPFAAVFYELWLYAVHRHTVPYN---DAEMLNMLNTLFDRHASQTSSASKFS 1317 (1374)
T ss_pred CcccCCCCcchHHHHHHHHHHhhHheeechHHHHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 1234677778888888999998888887766644332222 222333333 3455667777777777
Q ss_pred HHHHHHHhc
Q 003462 793 DLINESVSA 801 (818)
Q Consensus 793 ~lI~~s~~s 801 (818)
.-+++|++-
T Consensus 1318 ~~~k~s~~~ 1326 (1374)
T PTZ00303 1318 TTMKESVNV 1326 (1374)
T ss_pred HHHHHhcCc
Confidence 777777664
No 38
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=100.00 E-value=4.2e-42 Score=337.03 Aligned_cols=151 Identities=46% Similarity=0.746 Sum_probs=147.9
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhcCCCC
Q 003462 287 AERKSIQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPV 366 (818)
Q Consensus 287 ~~~~~l~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~~~~~~aLeLL~~~ 366 (818)
.+++.+..|+.++|+++|+++||+++|++|+++.++|++||+||+||+|+++.++.+++++|..|++++|++||+||++.
T Consensus 2 ~~~~~l~~i~~~~p~~~l~~~ek~llw~~R~~~~~~p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL~LL~~~ 81 (152)
T cd00864 2 WERKPLLAILLYPPFSTLTEEEKELLWKFRYYLLNVPKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDALELLSPK 81 (152)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhChHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHHHHcCCc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcCchhhhHHHhhhhhhccC
Q 003462 367 FESEEVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHD 437 (818)
Q Consensus 367 f~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~ 437 (818)
|+|+.||+|||++|++++|++|.+||||||||||||++++|+|++|||+||++|+.+||+|||+|++|+++
T Consensus 82 ~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLkye~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~ 152 (152)
T cd00864 82 YPDPVVRQYAVRVLESASDDELLLYLPQLVQALKYEPYLDSYLARFLLERALKSQRLGHQLYWNLKSEIHD 152 (152)
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 39
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6.9e-41 Score=415.12 Aligned_cols=420 Identities=21% Similarity=0.306 Sum_probs=293.4
Q ss_pred hHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhcCCCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc-c-
Q 003462 325 ALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFESEEVRAYAVCILERADDDELQCYLLQLVQALRF-E- 402 (818)
Q Consensus 325 aL~k~L~sV~W~~~~e~~~a~~lL~~W~~~~~~~aLeLL~~~f~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQaLky-E- 402 (818)
||+-.+.|..-.+..++.-...+..-|=. ++....|-..--+-+...+-.-+.-..-||.-.|.- |
T Consensus 2241 Alt~Yl~cl~~~~~~D~~~i~R~cslWfs------------ns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~~ 2308 (2806)
T KOG0892|consen 2241 ALTNYLNCLSESDEYDVDLIFRCCSLWFS------------NSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSEN 2308 (2806)
T ss_pred HHHhHHHHHhhcccccHHHHHHHhhhhcc------------ccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhccccC
Confidence 55555555555555555555555555621 122233433334444455555566666666666661 2
Q ss_pred ccchhhHHHHHHHHhhcCc-hhhhHHHhhhhhhccCchhh--hhh-HHHHHHHHHHHHhhCCCCCCCcchHHHHHHHHHH
Q 003462 403 RSDKSRLSQFLVQRSSHNI-ELASFLRWYVSVEFHDPVHA--KRF-YSTHEILEESMMKLTPGVDGEDGYKLWQSLVRQT 478 (818)
Q Consensus 403 ~~~~s~L~~fLi~ra~~n~-~i~~~l~W~L~~e~~~~~~~--~~~-~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~Q~ 478 (818)
..-..+|.+.+-+++..-| --++.++=.+..+-. ++.. .|- ..++..+...+.-. ..+ .++....+|+
T Consensus 2309 ~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd-~e~~n~sr~sl~~~rki~a~l~~~--~v~-----~~~~~~v~~v 2380 (2806)
T KOG0892|consen 2309 NSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRD-NEDENRSRGSIDRDRKIAAELDLC--DVN-----QGAGNMVRQL 2380 (2806)
T ss_pred chHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcC-hhhhhhcccccchhHHHHHHHhhh--Hhh-----ccchhHHHHH
Confidence 2223555655555555555 344444444443331 1111 111 12344444432210 111 1122466776
Q ss_pred H-HHHHHHHHHHhhccCCCChhHHHHHHHH---HHHhhhcccccC-CCCcccCCCCc------EEEEEEecCcceeeccc
Q 003462 479 E-LTAQLCSIMRDVGNVRGNTQKKIEKLRQ---LLSGLLSELTYF-EEPIRSPLAPN------ILITGIVPSESSIFKSA 547 (818)
Q Consensus 479 ~-~~~~L~~i~~~vk~~~~~~~~k~e~L~~---~L~~~~~~l~~~-~~~~~lPl~p~------~~i~~i~~~~~~v~~S~ 547 (818)
+ +++....+|. .+..+-.+..|.-++.. .+... ++... +..+.++.+++ ..|.++. +++.+...-
T Consensus 2381 ~~lc~~yI~lAn-l~~~q~~t~~k~v~~p~~~~~~K~~--nl~~v~~pT~ev~v~~s~~~~~~p~i~s~~-~~v~~~~Gi 2456 (2806)
T KOG0892|consen 2381 ECLCEAYISLAN-LKTSQNDTTSKLVRLPGYQWFLKQL--NLEGVPPPTMNVKVNDSGDYGNIPTVVSFD-DTVTFAGGI 2456 (2806)
T ss_pred HHHHHHHHHHhc-CcccccchhhhhhcCccccHHHhhh--hccCCCCCCCCccccCCcccCCCceEEecc-cceeeecCc
Confidence 5 7788888887 55443222233222211 12111 11111 11233444444 5677777 457777767
Q ss_pred cceEEEEEEeCCCCeEEEEEE-eCCCcchhHHHHHHHHHHHHHHhhc----CCCccccccEEEEeeCCCCeeeeec-Ccc
Q 003462 548 LHPLRLTFRTASGGTCKMIFK-KGDDIRQDQLVVQMVSLMDRLLKLE----NLDLHLTPYNVLATGQDEGLLEFIP-SRS 621 (818)
Q Consensus 548 ~~P~~l~f~~~dg~~~~~i~K-~gDDLRqD~lvlQli~lmd~ll~~~----~ldL~l~~Y~Vlp~~~~~GlIE~V~-s~t 621 (818)
..|+.|++.|+||++|.-++| ++||||||..|.|+|.+.|.+|.+. +++|.++||+|+|+|++.|+||||. +++
T Consensus 2457 naPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~~et~krkL~irTYKVvPls~~sGvlEwv~~tip 2536 (2806)
T KOG0892|consen 2457 NAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQNDRETRKRKLSIRTYKVIPLSPKAGVLEWVTNTIP 2536 (2806)
T ss_pred cCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhccHHHHhcccceeEEeeeecCcccceeecccCCee
Confidence 899999999999999999999 6699999999999999999999986 5899999999999999999999999 899
Q ss_pred HHHHHh-----hhh----------------------------------------hHHHHHHHhCCCCCCCCcccHHHHHH
Q 003462 622 LAQILS-----EHR----------------------------------------SIISYLQKFHPDEHGPFGITATCLET 656 (818)
Q Consensus 622 l~~I~~-----~~~----------------------------------------~l~~~l~~~~~~~~~~~~i~~~~~~~ 656 (818)
+++++. .|+ .+..||.+.+++|..|| +.|.+
T Consensus 2537 lgeyLv~~~~gah~ry~p~d~s~~~crk~m~~~q~k~~E~r~k~y~~vc~n~~PvfryFflEkF~dP~~WF----ekrla 2612 (2806)
T KOG0892|consen 2537 LGEYLVVESGGAHKRYRPNDWSLSKCRKLMSEVQKKSLETRLKAYDKVCRNIRPVFRYFFLEKFPDPADWF----EKRLA 2612 (2806)
T ss_pred hhhhhcccCCccccccCCCCCChHHHHHHHHHHhcccHHHHHHHHHHHHhhchHHHHHHHHHhcCCHHHHH----HHHHH
Confidence 999876 110 23457788899987765 67999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceeEc-CCCCEEEEeeccccCCC---CCCCCCCccccHHHHHHhCCCCccccchHHH
Q 003462 657 FIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDFGYILGRD---PKPFPPPMKLCKEMVEAMGGAESQYYTRFKS 732 (818)
Q Consensus 657 F~~S~Agysv~tYiLGIGDRH~dNIli~-~~G~lfHIDFG~ilg~~---p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~ 732 (818)
||+|.|+.|++|||||+||||..||||| .||+++|||+|..|..+ |.|+.||||||+++|++||-+|++ |.|+.
T Consensus 2613 YTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGItGve--GvFrR 2690 (2806)
T KOG0892|consen 2613 YTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGITGVE--GVFRR 2690 (2806)
T ss_pred HHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCccCch--HHHHH
Confidence 9999999999999999999999999999 59999999999999877 569999999999999999999999 99999
Q ss_pred HHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCCchHHHHHH
Q 003462 733 YCCEAYNILRKSSNLILNLFHLMAGSNIPDIASDPEKGILKL 774 (818)
Q Consensus 733 ~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~~~~~i~~l 774 (818)
.|+.++.+||++.+.++++++.++.+++=.|...|-++..+.
T Consensus 2691 ccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q 2732 (2806)
T KOG0892|consen 2691 CCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQ 2732 (2806)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHH
Confidence 999999999999999999999999999999988876555444
No 40
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=100.00 E-value=3.4e-38 Score=311.60 Aligned_cols=145 Identities=48% Similarity=0.797 Sum_probs=132.8
Q ss_pred CCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeec
Q 003462 33 KSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVS 112 (818)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~ 112 (818)
++|.+++ .+++.++.++|||+|||||||+|||.|++|+|++|++.+.|||||+|||+|+|||++|+||||||++.
T Consensus 15 ~~p~l~~-----~~~~~~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~ 89 (159)
T cd08397 15 EDPVLRF-----SGSNVSPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVS 89 (159)
T ss_pred CCchhhh-----hccccCCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEec
Confidence 4554444 77778889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCceeEeEEEEeeecccccccccceeEEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhccc
Q 003462 113 CGKDERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQ 183 (818)
Q Consensus 113 ~~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp~~~~d~~~~~~~p~~~~~~~~~~~~rl~~l~~~~~~g~ 183 (818)
+++++.+|||+|++|||++|+||+|+++|++||+.++||..+++| ++.++...+||+||||++|||++|+
T Consensus 90 ~~~~~~~vg~~~~~lFd~~g~Lr~G~~~l~lw~~~~~d~~~~t~~-~~~~~~~~~el~rLekl~kkye~G~ 159 (159)
T cd08397 90 GTGKAVPFGGTTLSLFNKDGTLRRGRQKLRVWPDVEADGSIPTST-GKSPDSERDELDRLEKLLKKYERGE 159 (159)
T ss_pred CCCCceEEEEEEEeeECCCCcEecCCEEEEEEeCCCCCCccccCC-CCccCcchhhHHHHHHHHHHhhcCC
Confidence 877789999999999999999999999999999999999988774 4455667899999999999999995
No 41
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=100.00 E-value=9e-35 Score=288.75 Aligned_cols=142 Identities=21% Similarity=0.380 Sum_probs=133.9
Q ss_pred HHHHhcCCCCCCCCHHHHHHHHHhhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcCCCCCCHhhHhhcCCCCCC-CH
Q 003462 292 IQRILKYPPTRTLSGDEKQLLWKFRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRWEMIDVCDALELLSPVFE-SE 370 (818)
Q Consensus 292 l~~i~~~~p~~~L~~~ek~llW~~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W~~~~~~~aLeLL~~~f~-~~ 370 (818)
+..+.++| +..|+.+++++||++|+++.++|+||++|| +|++..++.++++.|..|+|++|++|||||++.|+ |+
T Consensus 10 v~l~~Rfp-~~~l~~e~~~Lv~~~p~~~~~~p~AL~~~l---~~~~~~~~~~~l~~Ll~W~pi~p~~ALell~~~y~~~~ 85 (175)
T cd00871 10 IHLPSRFP-NSKLKSEVTRLVRKHPLAVVKIPEALPFLV---TGKSVDENSPDLKYLLYWAPVSPVQALSLFTPQYPGHP 85 (175)
T ss_pred HHHHHhCC-ChhhhHHHHHHHHHCHHHHhcCHHHHHHHh---CccChhhHHHHHHHHcCCCCCCHHHHHHHhCcccCCCH
Confidence 45666677 889999999999999999999999999997 69999999988888889999999999999999998 79
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccccchhhHHHHHHHHhhcCchhhhHHHhhhhhhccCch
Q 003462 371 EVRAYAVCILERADDDELQCYLLQLVQALRFERSDKSRLSQFLVQRSSHNIELASFLRWYVSVEFHDPV 439 (818)
Q Consensus 371 ~VR~yAv~~L~~~~d~~l~~yL~QLVQaLkyE~~~~s~L~~fLi~ra~~n~~i~~~l~W~L~~e~~~~~ 439 (818)
.||+|||++|+++++|++.+||||||||||||. ++.|++|||+||..|+.+||+|||+|++|+..++
T Consensus 86 ~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~--~~~l~~FLl~~A~~s~~faHql~W~lkae~~~de 152 (175)
T cd00871 86 LVLQYAVRVLESYPVETVFFYIPQIVQALRYDK--MGYVEEYILETAKRSQLFAHQIIWNMQTNCYKDE 152 (175)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc--cchHHHHHHHHHhhhHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999997 5899999999999999999999999999997654
No 42
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=99.97 E-value=4.8e-31 Score=260.07 Aligned_cols=117 Identities=23% Similarity=0.328 Sum_probs=104.5
Q ss_pred CCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEe
Q 003462 12 CDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITL 91 (818)
Q Consensus 12 ~~~~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~f 91 (818)
=|++.|++|||.++++- |..+.+++||+||||||+++||.|++|++++| +.+.|||||+|
T Consensus 4 wd~~~~~~v~i~~~~~~-------------------~~~~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~f 63 (158)
T cd08398 4 WKINSNLRIKILCATYV-------------------NVNDIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDY 63 (158)
T ss_pred eeCCCCeEEEEEeeccC-------------------CCCCcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEc
Confidence 48999999999997772 22356899999999999999999999999998 66789999999
Q ss_pred cccccCcCccCceEEEEEeecCCC----CceeEeEEEEeeecccccccccceeEEeecCCC
Q 003462 92 STKYRDLTAHSQLALTVWDVSCGK----DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKE 148 (818)
Q Consensus 92 pI~~~dLPr~a~L~~ti~~~~~~~----~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp~~~ 148 (818)
||+|+||||+|+||||||++.+.+ +..+|||+|++|||++|.||+|.++|++||..+
T Consensus 64 pI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~~~~ 124 (158)
T cd08398 64 DIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDYTDTLVSGKMALNLWPVPH 124 (158)
T ss_pred ccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECCCChhhCCCEEEEEEcCCc
Confidence 999999999999999999997532 347999999999999999999999999999643
No 43
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=99.97 E-value=1.5e-31 Score=260.29 Aligned_cols=132 Identities=42% Similarity=0.720 Sum_probs=105.6
Q ss_pred CceEEEEEEEeCCcccccce-ecccccCC-CCccccccEEecccccCcCccCceEEEEEeecCCCCc----eeEeEEEEe
Q 003462 53 PELYVECALYIDGAPFGLPM-RTRLESMG-PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDE----RLVGGTTIL 126 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~-~T~~~~~~-~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~----~~vG~~~~~ 126 (818)
++++|+|+|||||++||.|+ .|++++++ ....|||||+|||.||||||+|+|||+||++....+. .+|||++++
T Consensus 2 ~~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 2 SKLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred CeEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 57999999999999999998 89999988 7889999999999999999999999999999876554 899999999
Q ss_pred eecccccccccceeEEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHhhhhcccccc---cchhhhhhH
Q 003462 127 LFNSKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKLINKYEREQIQR---VDWLDRLTF 195 (818)
Q Consensus 127 LFd~~~~Lr~G~~~L~lWp~~~~d~~~~~~~p~~~~~~~~~~~~rl~~l~~~~~~g~~~~---~~wld~~~~ 195 (818)
|||+++.||+|.+.|.+||..++++..++ +|++|+++++++|++|++++ ++|||++||
T Consensus 82 lFd~~~~L~~G~~~L~lW~~~~~~~~~~~-----------~~~~~l~~~~~~~~~g~~~~~~~v~wld~l~~ 142 (142)
T PF00792_consen 82 LFDYRGQLRQGPQKLSLWPDEEPDPSGPT-----------DELNRLEKLLKKYERGEIPHPPIVEWLDFLTF 142 (142)
T ss_dssp SB-TTSBBEEEEEEEE-EET-TTSS---------------SSS-TTSTCSS-S-SSS-EEEEEEE--SSE--
T ss_pred eECCCCcccCCCEEEEEEcCCCCcccccc-----------cccchhhHhhccCcCCCcCCCCCcccccCCCC
Confidence 99999999999999999998877654332 57899999999999999999 999999986
No 44
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=99.96 E-value=1.5e-29 Score=253.11 Aligned_cols=120 Identities=18% Similarity=0.278 Sum_probs=102.7
Q ss_pred eeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccE
Q 003462 10 LSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPI 89 (818)
Q Consensus 10 ~s~~~~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl 89 (818)
..-|++.|++|||.+++- +. .......+++|+|+||||++++|.+ +|+|++|++.+.|||||
T Consensus 4 slwdi~~~friki~~~~~--~~---------------~~~~~~~~l~V~~~Ly~g~~~l~~~-~T~~~~~~~~~~WnEwL 65 (178)
T cd08399 4 SLWDCDRKFRVKILGIDI--PV---------------LPRNTDLTVFVEANIQHGQQVLCQR-RTSPKPFTEEVLWNTWL 65 (178)
T ss_pred eeEecCCCEEEEEEeecc--cC---------------cCCCCceEEEEEEEEEECCeecccc-eeeccCCCCCccccccE
Confidence 346999999999998872 21 1123346899999999998888754 89999999999999999
Q ss_pred EecccccCcCccCceEEEEEeecCCC----------------CceeEeEEEEeeecccccccccceeEEeecCC
Q 003462 90 TLSTKYRDLTAHSQLALTVWDVSCGK----------------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGK 147 (818)
Q Consensus 90 ~fpI~~~dLPr~a~L~~ti~~~~~~~----------------~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp~~ 147 (818)
+|||+|+||||+|+|||+||++.+.+ ++.||||+|++|||++++||+|++.|++||..
T Consensus 66 ~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~W~~~ 139 (178)
T cd08399 66 EFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVLHMWQIS 139 (178)
T ss_pred ECccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEEEEecCC
Confidence 99999999999999999999985421 36799999999999999999999999999954
No 45
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=99.96 E-value=1.6e-29 Score=253.52 Aligned_cols=121 Identities=23% Similarity=0.362 Sum_probs=108.5
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEE
Q 003462 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPIT 90 (818)
Q Consensus 11 s~~~~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~ 90 (818)
+-|++.+++|+|.++++-.- .+...+++|+|+|||||++||.|++|++++|.+.+.|||||+
T Consensus 3 ~w~~~~~f~i~i~~~~~~~~------------------~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~ 64 (173)
T cd08693 3 LWDIEEKFSITLHKISNLNA------------------AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLE 64 (173)
T ss_pred eeccCCCEEEEEEEeccCcc------------------CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEE
Confidence 35899999999999998321 245689999999999999999999999999988899999999
Q ss_pred ecccccCcCccCceEEEEEeecCCC----------------CceeEeEEEEeeecccccccccceeEEeecCCCC
Q 003462 91 LSTKYRDLTAHSQLALTVWDVSCGK----------------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEA 149 (818)
Q Consensus 91 fpI~~~dLPr~a~L~~ti~~~~~~~----------------~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp~~~~ 149 (818)
|||+|+||||+|+|||+||++.... +..+|||+|++|||+++.||+|.+.|++||..+.
T Consensus 65 F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~lW~~~~~ 139 (173)
T cd08693 65 FDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYMWTYAED 139 (173)
T ss_pred cccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEecCCCcc
Confidence 9999999999999999999986422 2579999999999999999999999999997664
No 46
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=99.96 E-value=4.5e-29 Score=250.17 Aligned_cols=156 Identities=23% Similarity=0.409 Sum_probs=130.7
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecc----cccCCCCcccc
Q 003462 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTR----LESMGPMYCWN 86 (818)
Q Consensus 11 s~~~~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~----~~~~~~~~~Wn 86 (818)
+.|++.+++|+|.++.+..+.. .++.+++||+|+||||+++||.|++|+ |++|...+.||
T Consensus 3 ~~~v~~~~~i~v~~~h~~~~~~----------------~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wn 66 (171)
T cd04012 3 ASTVTDLLSVTVSSLHRIPPTW----------------VQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWD 66 (171)
T ss_pred cccccccEEEEEEEeecCChHH----------------hhccccEEEEEEEEECCEECcCceeccccccccCcccccccc
Confidence 5689999999999999964432 234688999999999999999999996 67787788899
Q ss_pred ccEEecccccCcCccCceEEEEEeecCCC---------CceeEeEEEEeeecccccccccceeEEeecCCCCCCCCCCCC
Q 003462 87 EPITLSTKYRDLTAHSQLALTVWDVSCGK---------DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGSLPTST 157 (818)
Q Consensus 87 ewl~fpI~~~dLPr~a~L~~ti~~~~~~~---------~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp~~~~d~~~~~~~ 157 (818)
|||+|||+|+||||+|+|||+||++.... ++.+|||+|++|||+++.||+|.+.|+|||..++++..+.++
T Consensus 67 ewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~~~~~~~~~~~~~ 146 (171)
T cd04012 67 EWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWPPSKDNPLGPAPP 146 (171)
T ss_pred ceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEeccCCccCcCCCCCc
Confidence 99999999999999999999999987653 468999999999999999999999999999887765432210
Q ss_pred CCCCCCCchhhHHHHHHHHhhhhcccccccchhhhhhHHHHHHHHhhhhccCCCCceEEEEEeCCCCceeEee
Q 003462 158 PGKVPKNERGELERLEKLINKYEREQIQRVDWLDRLTFKALEKIKEQENFRNGNSYLYLVVDFGRLEHRVVFQ 230 (818)
Q Consensus 158 p~~~~~~~~~~~~rl~~l~~~~~~g~~~~~~wld~~~~~~i~~~~~~~~~~~~~~~~~L~Iefp~f~~pVvy~ 230 (818)
+ +....++..|.||||.+..+|+|+
T Consensus 147 ~------------------------------------------------~~~~~~~~~l~i~fp~~~~~v~f~ 171 (171)
T cd04012 147 P------------------------------------------------LFEQPDRVILQIDFPSSAFDVIFP 171 (171)
T ss_pred C------------------------------------------------CcCCCCccEEEEeCCCccccccCC
Confidence 0 122335789999999999998874
No 47
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.96 E-value=1.8e-28 Score=242.16 Aligned_cols=125 Identities=29% Similarity=0.493 Sum_probs=108.7
Q ss_pred eCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEE
Q 003462 11 SCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPIT 90 (818)
Q Consensus 11 s~~~~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~ 90 (818)
.-|++.+++|||.+++|... +....++++|+|||||||+++|.+..|...++...+.|||||+
T Consensus 3 l~di~~~~~i~i~~~~~~~~-----------------~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~ 65 (156)
T cd08380 3 LWDINFNLRIKIHGITNINL-----------------LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLT 65 (156)
T ss_pred eeecCCCeEEEEEeeccccc-----------------cCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeE
Confidence 35899999999999999532 3345689999999999999988776665555547788999999
Q ss_pred ecccccCcCccCceEEEEEeecCCC--CceeEeEEEEeeecccccccccceeEEeecCCCCCCC
Q 003462 91 LSTKYRDLTAHSQLALTVWDVSCGK--DERLVGGTTILLFNSKMQLKTGKQKLRLWPGKEADGS 152 (818)
Q Consensus 91 fpI~~~dLPr~a~L~~ti~~~~~~~--~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp~~~~d~~ 152 (818)
|||.|+||||+|+|||+||++.... ++.+|||+|++|||++|.||+|.+.|++||+.++++.
T Consensus 66 F~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~~~~~~~~ 129 (156)
T cd08380 66 FDILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDYKGKLRQGMITLNLWPGKKTDPR 129 (156)
T ss_pred ccchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcccCcEecCCEEEeccCCcccCcc
Confidence 9999999999999999999998654 5789999999999999999999999999998887754
No 48
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=99.93 E-value=7.3e-27 Score=297.75 Aligned_cols=236 Identities=25% Similarity=0.467 Sum_probs=199.7
Q ss_pred CCcEEEEEEecCcceeeccccceEEEEEEeCCCCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcC----CCccccccE
Q 003462 528 APNILITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPYN 603 (818)
Q Consensus 528 ~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~----ldL~l~~Y~ 603 (818)
.|-+.|.+|.+ +..|..|+.+|.++..+++||+.|.++.|.++|+|||+++||++.+||.++..+. +.+.+..|.
T Consensus 1954 ~~~i~i~~f~~-~~~vitskqRprkl~i~gs~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr~L~iq~Y~ 2032 (2341)
T KOG0891|consen 1954 KPIIRIQSFEP-KFNVITSKQRPRKLVIRGSDGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRRNLTIQRYS 2032 (2341)
T ss_pred ceEEehhhccH-HHHHHHHHhhhHHHhhcccchhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHHHHHHHHhh
Confidence 45566666665 5889999999999999999999999999999999999999999999999999875 789999999
Q ss_pred EEEeeCCCCeeeeec-CccHHHHHhhhhhHH-------HHHH-HhCCC--------------------CC----------
Q 003462 604 VLATGQDEGLLEFIP-SRSLAQILSEHRSII-------SYLQ-KFHPD--------------------EH---------- 644 (818)
Q Consensus 604 Vlp~~~~~GlIE~V~-s~tl~~I~~~~~~l~-------~~l~-~~~~~--------------------~~---------- 644 (818)
++|.+++.|+|+||| +.|++..++++.... .+.. +..++ +.
T Consensus 2033 ~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k~i~l~~eh~~~~~~~l~~~~ltl~qk~~vfe~~~~~t~G~dl~~~lwlk 2112 (2341)
T KOG0891|consen 2033 VIPLSPDSGLIGWVPNCDTLHTLIREYREKKKIPLNIEHRVMLQMAPDYDHLTLMQKVEVFEYALSNTQGDDLYKVLWLK 2112 (2341)
T ss_pred hcCCCCCCceeeeecccccHHHHHHHHHHhhccCCcchHHHHHhcCccccchhhhhHHhHhHHHhhcCcHHHHHHHHHHh
Confidence 999999999999999 899998877632110 0000 00000 00
Q ss_pred -CCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEc-CCCCEEEEeeccccC----CCCCCCCCCccccHHHHHH
Q 003462 645 -GPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDFGYILG----RDPKPFPPPMKLCKEMVEA 718 (818)
Q Consensus 645 -~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~-~~G~lfHIDFG~ilg----~~p~pf~~PFrLT~~mv~~ 718 (818)
..-..+-..+.+|++|.|++|+.+|++|+||||+.|+|++ .+|+++|||||..|+ +.++|+.+|||||+.++.+
T Consensus 2113 S~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe~~pfRlTrmli~a 2192 (2341)
T KOG0891|consen 2113 SPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPEKVPFRLTRMLINA 2192 (2341)
T ss_pred CCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccccccHHHHHHHHHh
Confidence 0000123457899999999999999999999999999999 599999999999998 4567888999999999999
Q ss_pred hCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCcCC
Q 003462 719 MGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIASD 766 (818)
Q Consensus 719 mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~~~ 766 (818)
|-..+-+ |.|+..|..+..++|.+.+.+++.++.++-+++-+|+..
T Consensus 2193 mev~gl~--g~~~~t~e~v~~~lr~~~~sl~a~leafvydplinwr~~ 2238 (2341)
T KOG0891|consen 2193 MEVTGIE--GTYRITCEHVMRVLRTNKESLMAVLEAFVYDPLINWRLD 2238 (2341)
T ss_pred HHHHhhh--hHHHHHHHHHHHhhcCChHHHHHHHHhhhcccchhhhcc
Confidence 9877777 999999999999999999999999999999999888876
No 49
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=99.81 E-value=4.8e-20 Score=169.09 Aligned_cols=64 Identities=31% Similarity=0.551 Sum_probs=60.7
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCC
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD 116 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~ 116 (818)
+++||+|||||||++||.|++|++++|.+.+.|||||+|||+|+||||+|+|||+||++.++.+
T Consensus 32 ~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~~~~ 95 (100)
T smart00142 32 SDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKNPSK 95 (100)
T ss_pred ceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeCCcc
Confidence 7999999999999999999999999999999999999999999999999999999999876543
No 50
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=5.2e-13 Score=172.26 Aligned_cols=230 Identities=18% Similarity=0.212 Sum_probs=196.0
Q ss_pred CcEEEEEEecCcceeeccccceEEEEEEeCCCCeEEEEEE--eCCCcchhHHHHHHHHHHHHHHhhcC----CCcccccc
Q 003462 529 PNILITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFK--KGDDIRQDQLVVQMVSLMDRLLKLEN----LDLHLTPY 602 (818)
Q Consensus 529 p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K--~gDDLRqD~lvlQli~lmd~ll~~~~----ldL~l~~Y 602 (818)
.-++|.++.|....|.+..++-+|++.+|+||+.|++.+. .--+-|.++||+|+++++|..+.+.+ +.+.+.+.
T Consensus 3190 ~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p 3269 (3550)
T KOG0889|consen 3190 YFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPGLRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLP 3269 (3550)
T ss_pred hhhhHHHhccchhhhcccceeEEEEEEeccCCeecceeeecccCCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCc
Confidence 4478899999999999999999999999999999965444 44677999999999999999998864 78999999
Q ss_pred EEEEeeCCCCeeeeec-CccHHHHHhhhh--------------------------------------------------h
Q 003462 603 NVLATGQDEGLLEFIP-SRSLAQILSEHR--------------------------------------------------S 631 (818)
Q Consensus 603 ~Vlp~~~~~GlIE~V~-s~tl~~I~~~~~--------------------------------------------------~ 631 (818)
.++|+|+...++|..| +.|+.+|+++++ .
T Consensus 3270 ~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~si 3349 (3550)
T KOG0889|consen 3270 IVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLYFDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSI 3349 (3550)
T ss_pred eeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHH
Confidence 9999999999999999 899999987621 2
Q ss_pred HHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEc-CCCCEEEEeeccccCCCC----CCCC
Q 003462 632 IISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLR-DDGRLFHVDFGYILGRDP----KPFP 706 (818)
Q Consensus 632 l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~-~~G~lfHIDFG~ilg~~p----~pf~ 706 (818)
+.+|+.+.++++...|- .+++|+.++|..++++|++.+|-|-++-++++ .+|.++--||-+-...+. ..++
T Consensus 3350 l~dy~~~tf~~~~d~w~----frk~f~~qla~~~~~~~~lni~~~~p~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~ 3425 (3550)
T KOG0889|consen 3350 LKDYFYKTFTNYSDFWT----FRKQFTDQLAVFSFMEYMLNINGRGPAKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEP 3425 (3550)
T ss_pred HHHHHHHhcCChhhhhh----hHhHHHHHHHHHHHHHHHHhcCCCCccceeeeeccccccchhhccCcccCccccccCCc
Confidence 35678888877554332 48999999999999999999999999999999 599999999876553322 2468
Q ss_pred CCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHHHHHccCCCCCCc
Q 003462 707 PPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLFHLMAGSNIPDIA 764 (818)
Q Consensus 707 ~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~~lm~~~~ip~~~ 764 (818)
|||||||++.+..|..+.+ |.+...++.+..++-++-+.+-..+.+++++.+-.|.
T Consensus 3426 VpFRlTpni~~~i~~~~ve--g~l~~s~~a~ar~l~~p~~~l~~~l~~~~RDE~~~w~ 3481 (3550)
T KOG0889|consen 3426 VPFRLTPNIQEFIGDFGVE--GLLAGSMMAIARCLIEPDFELDPYLQLFFRDEIISWF 3481 (3550)
T ss_pred CCeeecCCchhhhcchhhh--hhhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHh
Confidence 9999999999999988888 9999999999999999988888888888776554443
No 51
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=97.12 E-value=0.0036 Score=60.73 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=62.1
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
..++.||++.+..+++.++. .+|.-+.-..++.|||-+.|+|.-.+|+. +.|.|+||+.....+...||.+.++.+.
T Consensus 33 ~~~d~yVkv~l~~~~~~~~~-~kT~v~~~~~nP~fnE~F~f~i~~~~l~~-~~L~~~V~~~~~~~~~~~lG~v~ig~~~ 109 (137)
T cd08409 33 AHTSVYVKVSLMIHNKVVKT-KKTEVVDGAASPSFNESFSFKVTSRQLDT-ASLSLSVMQSGGVRKSKLLGRVVLGPFM 109 (137)
T ss_pred CCCCeEEEEEEEECCEEeee-eecccEeCCCCCcccceEEEECCHHHhCc-cEEEEEEEeCCCCCCcceEEEEEECCcc
Confidence 34788999999988776533 35665555667899999999998888875 8899999998876677899999999764
No 52
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=97.09 E-value=0.0043 Score=59.93 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=60.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeeccc
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (818)
.+|-||.+.+.+|++... ...|..+.-+.++.|||.+.|+|.-.++. ++.|.|+|||.....+...||.+.++.+...
T Consensus 34 ~~DPyV~v~l~~~~~~~~-~~kT~v~~~t~nP~wnE~F~f~i~~~~l~-~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 34 GSDPFVKIQLVHGLKLIK-TKKTSCMRGTIDPFYNESFSFKVPQEELE-NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG 111 (135)
T ss_pred CCCeEEEEEEEcCCcccc-eEcCccccCCCCCccceeEEEeCCHHHhC-CCEEEEEEEeCCCCCCCcEEEEEEEcCccCC
Confidence 477899999987776542 23455554455689999999999877776 5689999999876667789999988776544
Q ss_pred c
Q 003462 132 M 132 (818)
Q Consensus 132 ~ 132 (818)
+
T Consensus 112 ~ 112 (135)
T cd08410 112 P 112 (135)
T ss_pred c
Confidence 3
No 53
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=96.98 E-value=0.0083 Score=57.02 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=71.9
Q ss_pred eEEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcc
Q 003462 5 EFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYC 84 (818)
Q Consensus 5 ~~~~~~s~~~~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~ 84 (818)
++.|.++.+ ...+.|+|..-.+-.+. . ...+|-||.+.+..+.+.. ...+|+.+.-+.++.
T Consensus 3 ~l~~~l~y~-~~~L~V~Vi~A~~L~~~--------------~---~~~~DpyVkv~l~~~~~~~-~~~kT~v~~~~~nP~ 63 (122)
T cd08381 3 QVKLSISYK-NGTLFVMVMHAKNLPLL--------------D---GSDPDPYVKTYLLPDPQKT-TKRKTKVVRKTRNPT 63 (122)
T ss_pred eEEEEEEEe-CCEEEEEEEEeeCCCCC--------------C---CCCCCCEEEEEEeeCCccC-CceeCCccCCCCCCC
Confidence 345555555 55677777666663221 1 2356779999988655332 233566555556789
Q ss_pred ccccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 85 WNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 85 Wnewl~fpI-~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
|||.+.|++ ...++ .++.|.|+|||...-.+...+|.+.++|=+
T Consensus 64 wnE~F~f~~~~~~~l-~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (122)
T cd08381 64 FNEMLVYDGLPVEDL-QQRVLQVSVWSHDSLVENEFLGGVCIPLKK 108 (122)
T ss_pred cccEEEEecCChHHh-CCCEEEEEEEeCCCCcCCcEEEEEEEeccc
Confidence 999999997 55555 467899999998765566799999999943
No 54
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=96.95 E-value=0.0092 Score=57.33 Aligned_cols=111 Identities=16% Similarity=0.197 Sum_probs=73.5
Q ss_pred CCCCeEEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCC
Q 003462 1 MSGNEFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMG 80 (818)
Q Consensus 1 ~~~~~~~~~~s~~~~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~ 80 (818)
||.-.|+..|..+- ..+.|+|..-.+-.+. + .+ ...+|-||.+.|..+..... ..+|+.+.-.
T Consensus 1 ~G~i~~sl~Y~~~~-~~L~V~V~~a~nL~~~--d------------~~-~g~~dpYVkv~llp~~~~~~-k~kT~v~~~t 63 (128)
T cd08392 1 TGEIEFALHYNFRT-SCLEITIKACRNLAYG--D------------EK-KKKCHPYVKVCLLPDKSHNS-KRKTAVKKGT 63 (128)
T ss_pred CcEEEEEEEEeCCC-CEEEEEEEecCCCCcc--C------------CC-CCCCCeEEEEEEEeCCcccc-eeecccccCC
Confidence 34434555554333 3577777766663221 0 00 13467799999986654332 3356665555
Q ss_pred CCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 81 ~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
..+.|||.+.|+|.-.+|+. ..|.++||+...-.+...+|.+.|+|=+
T Consensus 64 ~nPvfNE~F~f~v~~~~l~~-~~L~v~V~~~~~~~~~~~lG~~~i~L~~ 111 (128)
T cd08392 64 VNPVFNETLKYVVEADLLSS-RQLQVSVWHSRTLKRRVFLGEVLIPLAD 111 (128)
T ss_pred CCCccceEEEEEcCHHHhCC-cEEEEEEEeCCCCcCcceEEEEEEEcCC
Confidence 66889999999988777764 6799999998765566799999999843
No 55
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=96.94 E-value=0.01 Score=56.76 Aligned_cols=79 Identities=22% Similarity=0.244 Sum_probs=60.3
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 003462 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (818)
..++-||.+.|..+.+....-.+|+-+.-..++.|||.++|||...+|. +..|.|+||+...-++...+|++.++|=+.
T Consensus 33 ~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~ 111 (124)
T cd08680 33 ENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY-QKTLQVDVCSVGPDQQEECLGGAQISLADF 111 (124)
T ss_pred CCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh-cCEEEEEEEeCCCCCceeEEEEEEEEhhhc
Confidence 4578899999987765433334565554456688999999999988876 568999999987655677999999998543
No 56
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=96.91 E-value=0.0071 Score=59.01 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=59.7
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
+|-||.+.|..+++.+.. .+|+.+.-+.++.|||-++|+|.-.+|... .|.|+|||....++...+|++.+++-
T Consensus 38 ~DpYVKv~l~~~~~k~~k-kkT~v~k~t~nPvfNE~f~F~v~~~~L~~~-~L~~~V~d~d~~~~~d~iG~v~lg~~ 111 (138)
T cd08407 38 IDVSVKVTLKHQNAKLKK-KQTKRAKHKINPVWNEMIMFELPSELLAAS-SVELEVLNQDSPGQSLPLGRCSLGLH 111 (138)
T ss_pred CCeEEEEEEEcCCcccce-eccceeeCCCCCccccEEEEECCHHHhCcc-EEEEEEEeCCCCcCcceeceEEecCc
Confidence 688999999998877643 356665555668899999999997777654 59999999987667779999999884
No 57
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=96.91 E-value=0.01 Score=56.50 Aligned_cols=77 Identities=21% Similarity=0.277 Sum_probs=58.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (818)
.+|-||.+.+..++.... ..+|..+.-+.++.|||.+.|++.-.+|. +..|.|+|||...-.+...+|.+.++|=+.
T Consensus 36 ~~dpyVkv~l~p~~~~~~-~~kT~v~~~t~nP~~nE~f~f~v~~~~l~-~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~ 112 (125)
T cd08393 36 RSDPYVKTYLLPDKSNRG-KRKTSVKKKTLNPVFNETLRYKVEREELP-TRVLNLSVWHRDSLGRNSFLGEVEVDLGSW 112 (125)
T ss_pred CCCcEEEEEEEcCCCccc-cccCccCcCCCCCccCceEEEECCHHHhC-CCEEEEEEEeCCCCCCCcEeEEEEEecCcc
Confidence 467799999986654321 23566665556788999999999888874 457999999987655667999999998443
No 58
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=96.86 E-value=0.012 Score=56.20 Aligned_cols=76 Identities=22% Similarity=0.270 Sum_probs=57.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+..++..... .+|+.+.-+..+.|||.+.|+|...+|. +..|.|+||+...-++...+|.+.++|=+
T Consensus 36 ~~DpyVkv~l~p~~~~~~~-~kT~v~~~t~nP~wnE~f~f~i~~~~l~-~~~L~~~V~d~~~~~~~~~lG~~~i~l~~ 111 (125)
T cd04029 36 RSNPYVKTYLLPDKSRQSK-RKTSIKRNTTNPVYNETLKYSISHSQLE-TRTLQLSVWHYDRFGRNTFLGEVEIPLDS 111 (125)
T ss_pred CCCcEEEEEEEcCCccccc-eEeeeeeCCCCCcccceEEEECCHHHhC-CCEEEEEEEECCCCCCCcEEEEEEEeCCc
Confidence 4667999999766643322 2566555456788999999999988884 45699999998765677799999999843
No 59
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=96.85 E-value=0.0096 Score=52.17 Aligned_cols=74 Identities=20% Similarity=0.259 Sum_probs=56.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeeccc
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (818)
..+.||.+.+...+ ....+|....-...+.|||-+.|++.-.+ ...|.|+||+....++...+|++.+++.+-.
T Consensus 20 ~~~~yv~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~---~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~ 93 (101)
T smart00239 20 KSDPYVKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPPE---LAELEIEVYDKDRFGRDDFIGQVTIPLSDLL 93 (101)
T ss_pred CCCceEEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCcc---cCEEEEEEEecCCccCCceeEEEEEEHHHcc
Confidence 46779999887655 23345655555557899998888876555 8999999999876556789999999988753
No 60
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=96.81 E-value=0.0033 Score=61.13 Aligned_cols=74 Identities=15% Similarity=0.259 Sum_probs=58.0
Q ss_pred CceEEEEEEEeCCcccccceecccccCC-CCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMG-PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~-~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
+|-||.+.|+.+++-+..- .|+-+--+ +++.|||-+.|+|...++ +.+|.+++||....++...||++.++.-.
T Consensus 35 ~dpYVKV~L~~~~k~~~Kk-KT~v~k~t~~~P~fNEsF~Fdv~~~~~--~v~l~v~v~d~~~~~~n~~IG~v~lG~~~ 109 (135)
T cd08692 35 LSFFVKVGMFSTGGLLYKK-KTRLVKSSNGQVKWGETMIFPVTQQEH--GIQFLIKLYSRSSVRRKHFLGQVWISSDS 109 (135)
T ss_pred CCcEEEEEEEECCCcceee-cCccEECCCCCceecceEEEeCCchhh--eeEEEEEEEeCCCCcCCceEEEEEECCcc
Confidence 4679999999999988543 55554433 457899999999998653 68999999998765566789999887753
No 61
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.70 E-value=0.017 Score=55.67 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=56.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|.||.+.+..+++... ..+|..+.-+..+.|||...|++...++. ++.|.|+|||....++...+|.+.+++-.
T Consensus 35 ~~dpyV~v~l~~~~~~~~-~~kT~v~~~t~~P~wne~F~f~i~~~~~~-~~~l~~~v~d~~~~~~~~~lG~~~i~~~~ 110 (136)
T cd08405 35 TSDPYVKVWLMYKDKRVE-KKKTVIKKRTLNPVFNESFIFNIPLERLR-ETTLIITVMDKDRLSRNDLIGKIYLGWKS 110 (136)
T ss_pred CCCceEEEEEEeCCCccc-cccCcceeCCCCCcccceEEEeCCHHHhC-CCEEEEEEEECCCCCCCcEeEEEEECCcc
Confidence 467799999887665442 33565554455689999999998776654 67899999998765566789999998754
No 62
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=96.62 E-value=0.021 Score=54.34 Aligned_cols=101 Identities=15% Similarity=0.175 Sum_probs=72.8
Q ss_pred EEEEeeCCCCC-CeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcc
Q 003462 6 FRFFLSCDINL-PVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYC 84 (818)
Q Consensus 6 ~~~~~s~~~~~-~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~ 84 (818)
+.|-++.|-.. .++|+|..=.+.. .+..+|=||.+.|..+++. ...+|+-+.-+.++.
T Consensus 3 l~fsL~Y~~~~~~L~V~vikA~~L~-------------------~~g~sDPYVKv~L~~~~k~--~k~kT~v~rktlnPv 61 (118)
T cd08677 3 LHYSLSYDKQKAELHVNILEAENIS-------------------VDAGCECYISGCVSVSEGQ--KEAQTALKKLALHTQ 61 (118)
T ss_pred EEEEEEEcCcCCEEEEEEEEecCCC-------------------CCCCCCeEEEEEEcCCcCc--cEEEcceecCCCCCc
Confidence 45555555543 3666666555421 1123677999999876652 244677766666789
Q ss_pred ccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 85 WNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 85 Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
|||.+.|+|...+|+. ..|.|+|||...-++..+||.+.+++=
T Consensus 62 fnE~f~F~v~~~~l~~-~tL~~~V~d~Drfs~~d~IG~v~l~l~ 104 (118)
T cd08677 62 WEEELVFPLPEEESLD-GTLTLTLRCCDRFSRHSTLGELRLKLA 104 (118)
T ss_pred cccEEEEeCCHHHhCC-cEEEEEEEeCCCCCCCceEEEEEEccc
Confidence 9999999999999875 579999999987667789999999883
No 63
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=96.60 E-value=0.029 Score=54.01 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=56.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
.+|-||++.+-.+++... ..+|..+.-+.++.|||.+.|++...+|. ++.|.|+|||...-++...||.+.+++=
T Consensus 35 ~~dpyv~v~l~~~~~~~~-~~kT~v~~~t~nP~wne~f~f~i~~~~l~-~~~l~~~v~d~~~~~~~~~iG~~~i~~~ 109 (136)
T cd08402 35 LSDPYVKIHLMQNGKRLK-KKKTTIKKRTLNPYYNESFSFEVPFEQIQ-KVHLIVTVLDYDRIGKNDPIGKVVLGCN 109 (136)
T ss_pred CCCCeEEEEEEECCcccc-eeeccceeCCCCCcccceEEEECCHHHhC-CCEEEEEEEeCCCCCCCceeEEEEECCc
Confidence 467799999876665442 33455444455688999999998877764 4679999999876556679999999983
No 64
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=96.60 E-value=0.019 Score=54.36 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=69.4
Q ss_pred eEEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcc
Q 003462 5 EFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYC 84 (818)
Q Consensus 5 ~~~~~~s~~~~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~ 84 (818)
.++|.+. +..+.|+|..-.+-.+. . ...++-||.+.|..+.+..+ ..+|+.+.-+..+.
T Consensus 4 ~l~~~~~---~~~L~V~Vi~ar~L~~~--------------~---~g~~dpYVkv~l~p~~~~~~-~~kT~v~~~t~~P~ 62 (119)
T cd08685 4 KLSIEGQ---NRKLTLHVLEAKGLRST--------------N---SGTCNSYVKISLSPDKEVRF-RQKTSTVPDSANPL 62 (119)
T ss_pred EEEEEEc---CCEEEEEEEEEECCCCC--------------C---CCCCCeeEEEEEEeCCCCcc-eEeCccccCCCCCc
Confidence 3455552 34577777776663211 0 12467799999987664432 22566555556788
Q ss_pred ccccEEecccccCcCccCceEEEEEeecCCC-CceeEeEEEEeeec
Q 003462 85 WNEPITLSTKYRDLTAHSQLALTVWDVSCGK-DERLVGGTTILLFN 129 (818)
Q Consensus 85 Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~-~~~~vG~~~~~LFd 129 (818)
|||-+.|++.-.++.. .|.|+||+..... +...+|++.++|=+
T Consensus 63 ~nE~F~f~v~~~~~~~--~l~v~V~~~~~~~~~~~~lG~~~i~l~~ 106 (119)
T cd08685 63 FHETFSFDVNERDYQK--RLLVTVWNKLSKSRDSGLLGCMSFGVKS 106 (119)
T ss_pred cccEEEEEcChHHhCC--EEEEEEECCCCCcCCCEEEEEEEecHHH
Confidence 9999999998888753 6889999976543 35799999999944
No 65
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=96.60 E-value=0.021 Score=55.56 Aligned_cols=77 Identities=19% Similarity=0.150 Sum_probs=59.0
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
..+|-||.+.|..+++.... .+|+-+.-+.++.|||.+.|+|.-.+|+ ++.|.|+||+....++..++|.+.+....
T Consensus 34 g~~DpyVkv~l~~~~~~~~k-~kT~v~k~t~nP~~nE~f~F~v~~~~l~-~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 34 TTADPFVKVYLLQDGRKISK-KKTSVKRDDTNPIFNEAMIFSVPAIVLQ-DLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCeEEEEEEEeCCccccc-cCCccccCCCCCeeceeEEEECCHHHhC-CcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 35678999999988876543 2465544455688999999998877755 47899999998766667789999986653
No 66
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=96.59 E-value=0.02 Score=55.75 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=58.6
Q ss_pred CCceEEEEEEEeC-CcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYID-GAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~-~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|.||.+++..+ ++.++. .+|+-+.-..++.|||.+.|+|.-.+|+ +..|.|+||+...-.+...+|.+.+++..
T Consensus 35 ~~dpyVkv~llp~~~~~~~~-~kT~v~~~t~nPvfnEtF~f~i~~~~l~-~~~L~~~V~~~~~~~~~~~iG~v~l~~~~ 111 (138)
T cd08408 35 APDTYVKLTLLNSDGQEISK-SKTSIRRGQPDPEFKETFVFQVALFQLS-EVTLMFSVYNKRKMKRKEMIGWFSLGLNS 111 (138)
T ss_pred CCCeeEEEEEEeCCCcceee-ccceeecCCCCCcEeeeEEEECCHHHhC-ccEEEEEEEECCCCCCCcEEEEEEECCcC
Confidence 5788999999864 554443 3666655556789999999999887754 56799999998766677799998887764
No 67
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=96.52 E-value=0.022 Score=54.51 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=75.2
Q ss_pred eEEEEeeCCCCCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcc
Q 003462 5 EFRFFLSCDINLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYC 84 (818)
Q Consensus 5 ~~~~~~s~~~~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~ 84 (818)
.|++.|..+- ..++|+|.+-.+-.+. ... ...+|-||.+.+..+.+. ..+|..+.-+.++.
T Consensus 6 ~~~l~y~~~~-~~L~V~Vi~a~~L~~~--------------~~~-~~~~DpyV~v~l~~~~~~---~~kT~v~~~t~nP~ 66 (128)
T cd08388 6 FFSLRYNSEK-KALLVNIIECRDLPAM--------------DEQ-SGTSDPYVKLQLLPEKEH---KVKTRVLRKTRNPV 66 (128)
T ss_pred EEEEEEECCC-CEEEEEEEEeECCCCC--------------CCC-CCCcCCEEEEEEeCCcCc---eeeccEEcCCCCCc
Confidence 3444444432 3577888777763221 001 134677999998754332 23565554456789
Q ss_pred ccccEEe-cccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecccccccccceeEEeec
Q 003462 85 WNEPITL-STKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 145 (818)
Q Consensus 85 Wnewl~f-pI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp 145 (818)
|||...| .+...++... .|.|+||+...-++...+|.+.++|=+-. +. |...+.+|.
T Consensus 67 wnE~F~f~~~~~~~~~~~-~L~~~V~d~d~~~~d~~lG~~~i~L~~l~--~~-~~~~~~~~~ 124 (128)
T cd08388 67 YDETFTFYGIPYNQLQDL-SLHFAVLSFDRYSRDDVIGEVVCPLAGAD--LL-NEGELLVSR 124 (128)
T ss_pred eeeEEEEcccCHHHhCCC-EEEEEEEEcCCCCCCceeEEEEEeccccC--CC-CCceEEEEE
Confidence 9999999 5777777654 59999999866556779999999995432 22 223367885
No 68
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=96.51 E-value=0.024 Score=53.94 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=58.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.++.||++.+..++... ...+|..+.-+..+.|||.+.|++.-.+| ....|.|+||+.....+...+|.++++|-+
T Consensus 34 ~~dpyv~v~l~~~~~~~-~~~~T~~~~~~~~P~wne~f~f~i~~~~l-~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 34 LSDPYVKVSLLQGGKKL-KKKKTSVKKGTLNPVFNEAFSFDVPAEQL-EEVSLVITVVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred CCCcEEEEEEEcCCeEe-eeecCcceecCCCCeeeeeEEEECCHHHh-CCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence 57889999998766443 22355555445678999999999877666 467899999998765667899999999976
No 69
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=96.48 E-value=0.032 Score=56.81 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=53.8
Q ss_pred CCCccccccEEecccccCcCccCceEEEEEeecCCCC------ceeEeEEEEeeecccccccccceeEEeecCC
Q 003462 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD------ERLVGGTTILLFNSKMQLKTGKQKLRLWPGK 147 (818)
Q Consensus 80 ~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~------~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp~~ 147 (818)
.+.+.|+|-|+..+. .+|....-|.||+|.++...+ +.++|-+-++|+. +|+|+.|.+.|.+-...
T Consensus 64 nk~P~f~DEiKi~LP-~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~-~g~L~~g~~~LpV~~~~ 135 (179)
T cd08696 64 NKSPDFYDEIKIKLP-ADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR-NGRLQSGEFNLPVSLEK 135 (179)
T ss_pred CCCCcccceEEEEcC-CCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec-CCEEecCCEEEEEEecC
Confidence 456789999998877 467889999999999875322 4689999999996 67899999999886543
No 70
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=96.47 E-value=0.03 Score=52.76 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=65.5
Q ss_pred CCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccc
Q 003462 16 LPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKY 95 (818)
Q Consensus 16 ~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~ 95 (818)
..+.|+|.+-+|-.+. . ....++-||.+.+..+++ ...+|..+.-+.++.|||.+.|++..
T Consensus 16 ~~L~V~v~~a~~L~~~--------------d--~~~~~dpyv~v~l~~~~~---~~~kT~v~~~t~nP~wne~f~f~i~~ 76 (124)
T cd08385 16 NQLTVGIIQAADLPAM--------------D--MGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFTFKVPY 76 (124)
T ss_pred CEEEEEEEEeeCCCCc--------------c--CCCCCCCEEEEEEEcCCC---CceecccCcCCCCCceeeeEEEeCCH
Confidence 3577777777763221 0 112367799998864432 23466665555678999999999877
Q ss_pred cCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 96 RDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 96 ~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.++. +..|.|+|||...-.+...+|.+.++|=+
T Consensus 77 ~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 109 (124)
T cd08385 77 SELG-NKTLVFSVYDFDRFSKHDLIGEVRVPLLT 109 (124)
T ss_pred HHhC-CCEEEEEEEeCCCCCCCceeEEEEEecCc
Confidence 6664 46899999998655566799999999954
No 71
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=96.43 E-value=0.038 Score=52.15 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=56.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+..++.. .-+|..+.-+..+.|||.+.|++...+|+ +..|.|+|||...-.+...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~---~~kT~v~~~t~~P~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 109 (124)
T cd08387 36 TADPYCKVRLLPDRSN---TKQSKIHKKTLNPEFDESFVFEVPPQELP-KRTLEVLLYDFDQFSRDECIGVVELPLAE 109 (124)
T ss_pred CCCCeEEEEEecCCCC---cEeCceEcCCCCCCcccEEEEeCCHHHhC-CCEEEEEEEECCCCCCCceeEEEEEeccc
Confidence 3567999988655433 34566555556788999999999888874 56799999998655566789999998854
No 72
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=96.41 E-value=0.035 Score=53.11 Aligned_cols=74 Identities=24% Similarity=0.340 Sum_probs=56.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
.+|-||.+.+..++... ....|+.+.-+..+.|||.+.|++.-.+++ ...|.|+|||.....+...+|.+.+++
T Consensus 33 ~~DpyV~v~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~~~~~~l~-~~~l~~~V~d~d~~~~~~~lG~~~i~l 106 (133)
T cd08384 33 YSDPFVKLYLKPDAGKK-SKHKTQVKKKTLNPEFNEEFFYDIKHSDLA-KKTLEITVWDKDIGKSNDYIGGLQLGI 106 (133)
T ss_pred CCCcEEEEEEEcCCCcc-CCceeeeEeccCCCCcccEEEEECCHHHhC-CCEEEEEEEeCCCCCCccEEEEEEEec
Confidence 46779999987654332 223566665566789999999998877764 567999999976655667999999988
No 73
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=96.41 E-value=0.012 Score=55.96 Aligned_cols=90 Identities=21% Similarity=0.179 Sum_probs=61.9
Q ss_pred CCceEEEEEEEeCCcccccc-eecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 003462 52 RPELYVECALYIDGAPFGLP-MRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p-~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (818)
.+|-||.+.|.....+-... .+|..+.-+-++.|||.++|++.-.+.+..+.|.|+|||....++..+||.+.++|=+-
T Consensus 19 ~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~ 98 (120)
T cd08395 19 MFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDI 98 (120)
T ss_pred CCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHC
Confidence 46779999987322222222 24555543446889999999998777888899999999976545566999999997432
Q ss_pred cccccccceeEEeecC
Q 003462 131 KMQLKTGKQKLRLWPG 146 (818)
Q Consensus 131 ~~~Lr~G~~~L~lWp~ 146 (818)
. .+|. ..+|..
T Consensus 99 ~---~~~~--~~~w~~ 109 (120)
T cd08395 99 A---QAGS--CACWLP 109 (120)
T ss_pred c---CCCc--EEEEEE
Confidence 2 3332 456864
No 74
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=96.38 E-value=0.033 Score=53.67 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=58.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+..+++.+. ..+|..+.-+.++.|||...|++.-.++ .+..|.|+|||...-.+...||.+.+++..
T Consensus 35 ~~Dpyv~v~l~~~~~~~~-~~kT~v~k~t~nP~w~e~F~f~v~~~~~-~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 35 LADPYVKVNLYYGKKRIS-KKKTHVKKCTLNPVFNESFVFDIPSEEL-EDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred CCCeEEEEEEEcCCceee-eEcCccccCCCCCccCceEEEECCHHHh-CCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 467899999987766542 3355544444568899999999887777 567799999998765566799999998876
No 75
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=96.27 E-value=0.04 Score=62.33 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=100.4
Q ss_pred EEEEEecCcceeeccccceEEEEEEeCCCCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCC
Q 003462 532 LITGIVPSESSIFKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDE 611 (818)
Q Consensus 532 ~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~ 611 (818)
.|++|.....-.-+..++-.+|+|. +| ..+++|. -+++-|.....++..++.-... -++.+.+.+|+.-+.+.
T Consensus 44 ~i~~I~~~~GD~H~~Gr~V~~l~f~--~g--~kivYKP-Rsl~~d~~f~~l~~~ln~~~~~--~~~~l~~~~~l~~g~~Y 116 (370)
T PF13575_consen 44 KITSIEFGLGDTHNGGRSVAILEFS--SG--KKIVYKP-RSLSIDKAFNDLLEWLNEKNGT--PSLDLPTPKVLDRGDGY 116 (370)
T ss_pred CceEecCCCCCcCCCCceEEEEEEC--CC--CEEEEeC-cccHHHHHHHHHHHHHhhhccc--cccccccceeeeccCcc
Confidence 4666665544455556888888886 34 3589998 6899999988888877774221 23567788999988889
Q ss_pred CeeeeecCccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEE
Q 003462 612 GLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFH 691 (818)
Q Consensus 612 GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfH 691 (818)
|..|+|+..+..+ .+..++|-+-++++..+.|+||..|=|.+||.-+ .+.-+=
T Consensus 117 gW~EfI~~~~c~~--------------------------~~ev~~yY~r~G~llal~y~L~~~DlH~ENIIa~-g~~Pvl 169 (370)
T PF13575_consen 117 GWQEFIEHEPCNS--------------------------EEEVERYYYRLGVLLALLYLLNGTDLHFENIIAS-GEYPVL 169 (370)
T ss_pred eeEEEecCCCCCC--------------------------HHHHHHHHHHHHHHHHHHHHhCCCcccccceEEe-CCCcEE
Confidence 9999999544321 2346788889999999999999999999999875 345677
Q ss_pred EeeccccCC
Q 003462 692 VDFGYILGR 700 (818)
Q Consensus 692 IDFG~ilg~ 700 (818)
||.--+|..
T Consensus 170 IDlETlf~~ 178 (370)
T PF13575_consen 170 IDLETLFHP 178 (370)
T ss_pred EehhhhCCc
Confidence 887666654
No 76
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.22 E-value=0.051 Score=51.13 Aligned_cols=76 Identities=24% Similarity=0.306 Sum_probs=55.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI-~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.++-||++.+..++... ...+|..+.-+..+.|||.+.|++ .-.++ .++.|.|+|||....++...+|.+.++|=+
T Consensus 36 ~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~~~~~~~l-~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 36 LRNPYVKVYLLPDRSEK-SKRRTKTVKKTLNPEWNQTFEYSNVRRETL-KERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred CCCCEEEEEEccCCCcc-ccccccccCCCCCCccccEEEEcccCHHHh-CCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 46779999886544322 223566555556789999999994 44554 468899999998765566799999999865
No 77
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=96.19 E-value=0.046 Score=51.52 Aligned_cols=104 Identities=17% Similarity=0.235 Sum_probs=66.1
Q ss_pred EEEEeeCCC-CCCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcc
Q 003462 6 FRFFLSCDI-NLPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYC 84 (818)
Q Consensus 6 ~~~~~s~~~-~~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~ 84 (818)
+.|..+.+. ...+.|+|.+-.+-.+. + ....++-||++.+..++.. ..+|+.+.-+..+.
T Consensus 5 l~~~l~y~~~~~~L~v~v~~a~~L~~~--d--------------~~~~~dpyv~v~~~~~~~~---~~kT~v~~~t~~P~ 65 (125)
T cd08386 5 IQFSVSYDFQESTLTLKILKAVELPAK--D--------------FSGTSDPFVKIYLLPDKKH---KLETKVKRKNLNPH 65 (125)
T ss_pred EEEEEEECCCCCEEEEEEEEecCCCCc--c--------------CCCCCCceEEEEECCCCCc---ceeeeeecCCCCCc
Confidence 344444443 23577777776663221 0 1123567999887544322 24666655566789
Q ss_pred ccccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 85 WNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 85 Wnewl~fpI-~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
|||.+.|++ ...++ .+..|.|+|||...-++...+|.+.++|=+
T Consensus 66 Wne~f~f~~~~~~~l-~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~ 110 (125)
T cd08386 66 WNETFLFEGFPYEKL-QQRVLYLQVLDYDRFSRNDPIGEVSLPLNK 110 (125)
T ss_pred cceeEEEcccCHHHh-CCCEEEEEEEeCCCCcCCcEeeEEEEeccc
Confidence 999999984 34333 456899999998755566789999999843
No 78
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=96.17 E-value=0.03 Score=52.04 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=56.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+-..++. ..+|..+.-+..+.|||.+.|++...++-.++.|.|+|||...-.+...+|.+.++|=+
T Consensus 22 ~~Dpyv~v~~~~~~~~---~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 22 SSDPYVTASFAKFGKP---LYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKE 96 (111)
T ss_pred CCCccEEEEEccCCCc---cEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHH
Confidence 3567888887654432 24666665566789999999998877776778999999998655556789999998843
No 79
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=96.16 E-value=0.053 Score=52.04 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
.+|-||++.+..+|+.. ...+|..+.-+.++.|||-+.|++.-.++.. ..|.|+|||....++...||.+.+++.
T Consensus 34 ~~dpyvkv~l~~~~~~~-~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~-~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 34 FSDPYVKVSLMCEGRRL-KKKKTSVKKNTLNPTYNEALVFDVPPENVDN-VSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCceEEEEEEeCCccc-ceecCCcccCCCCCcccceEEEECCHHHhCC-CEEEEEEEECCCCCCCceeEEEEECCC
Confidence 46779999998776543 2335554444456889999999987666643 568999999876666779999999876
No 80
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=96.12 E-value=0.066 Score=50.58 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=70.3
Q ss_pred EEEEeeCCCC-CCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCcc
Q 003462 6 FRFFLSCDIN-LPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYC 84 (818)
Q Consensus 6 ~~~~~s~~~~-~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~ 84 (818)
+.+.+.++-. ..++|.|.+-.+-.+. .....++-||++.+..++... ..-.|..+.-+.++.
T Consensus 5 l~~~l~y~~~~~~L~V~vi~a~~L~~~----------------~~~~~~dpyv~v~l~~~~~~~-~~~kT~v~~~~~nP~ 67 (127)
T cd04030 5 IQLTIRYSSQRQKLIVTVHKCRNLPPC----------------DSSDIPDPYVRLYLLPDKSKS-TRRKTSVKKDNLNPV 67 (127)
T ss_pred EEEEEEEeCCCCEEEEEEEEEECCCCc----------------cCCCCCCceEEEEEEcCCCCC-ceEecccccCCCCCE
Confidence 3444444433 3477777666663221 012346779999987665432 233566555456789
Q ss_pred ccccEEecccccCcCccCceEEEEEeecCC--CCceeEeEEEEeeec
Q 003462 85 WNEPITLSTKYRDLTAHSQLALTVWDVSCG--KDERLVGGTTILLFN 129 (818)
Q Consensus 85 Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~--~~~~~vG~~~~~LFd 129 (818)
|||.+.|++.-.++. +..|.|+||+...- ++...+|.+.++|-+
T Consensus 68 wne~f~f~i~~~~l~-~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 68 FDETFEFPVSLEELK-RRTLDVAVKNSKSFLSREKKLLGQVLIDLSD 113 (127)
T ss_pred ECeEEEEecCHHHhc-CCEEEEEEEECCcccCCCCceEEEEEEeccc
Confidence 999999998877764 56899999997642 456799999999966
No 81
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=96.07 E-value=0.036 Score=51.41 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=53.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccc-cccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~W-newl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+ ++ ...+|+.+.-+..+.| ||.++|++.-.+| .++.|.|+|||....++...+|.+.++|=.
T Consensus 20 ~~Dpyv~v~~--~~----~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l-~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~ 91 (110)
T cd08688 20 LTDAFVEVKF--GS----TTYKTDVVKKSLNPVWNSEWFRFEVDDEEL-QDEPLQIRVMDHDTYSANDAIGKVYIDLNP 91 (110)
T ss_pred CCCceEEEEE--CC----eeEecceecCCCCCcccCcEEEEEcChHHc-CCCeEEEEEEeCCCCCCCCceEEEEEeHHH
Confidence 4577998876 33 3446665544556889 9999999887775 367899999997655566789999998854
No 82
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=96.06 E-value=0.021 Score=56.36 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=55.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEE-eecCCCCceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVW-DVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~-~~~~~~~~~~vG~~~~~LF 128 (818)
.+|=||.+.|..+++... --+|..+.-+.++.|||.++|+|. +.+..|.|+|| +.....+...+|.+.++|=
T Consensus 50 ~sDPYVKv~Llp~~~~~~-k~KT~v~kktlnPvfNE~F~f~v~----l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~ 122 (146)
T cd04028 50 LPAPYVKVYLLEGKKCIA-KKKTKIARKTLDPLYQQQLVFDVS----PTGKTLQVIVWGDYGRMDKKVFMGVAQILLD 122 (146)
T ss_pred CcCCeEEEEEECCCcccc-ceeceecCCCCCCccCCeEEEEEc----CCCCEEEEEEEeCCCCCCCCceEEEEEEEcc
Confidence 356699999998776543 235666555667889999999987 57889999999 4544345568999999993
No 83
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=96.06 E-value=0.056 Score=46.31 Aligned_cols=67 Identities=22% Similarity=0.444 Sum_probs=50.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEE
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTT 124 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~ 124 (818)
.++.||++.+-..+. .-..|..+.-+..+.|||-+.|++...++.. |.|.||+.....+...+|.+.
T Consensus 19 ~~~~yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~---l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 19 KPDPYVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS---LSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp SBEEEEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHGCGTE---EEEEEEEETSSSSEEEEEEEE
T ss_pred cccccceeecceeee---eeeeeeeeeccccceeeeeeeeeeecccccc---eEEEEEECCCCCCCCEEEEEC
Confidence 567888887765444 3346666666677899999999977666666 999999988766678899763
No 84
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=96.05 E-value=0.026 Score=57.99 Aligned_cols=67 Identities=19% Similarity=0.235 Sum_probs=55.6
Q ss_pred CCCccccccEEecccccCcCccCceEEEEEeecCC----CCceeEeEEEEeeecccc-cccccceeEEeecCC
Q 003462 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG----KDERLVGGTTILLFNSKM-QLKTGKQKLRLWPGK 147 (818)
Q Consensus 80 ~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~----~~~~~vG~~~~~LFd~~~-~Lr~G~~~L~lWp~~ 147 (818)
.+.+.|+|.|.+.|...+. ..+-|.|+++-++.. +.+.|+|-+-++|+..+| +|+.|.+.|.||...
T Consensus 63 ~~~P~W~EtIKl~lP~~~~-~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~~~gt~l~dG~H~L~vYK~d 134 (196)
T cd08694 63 VDKPKWFETFKVAIPIEDF-KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQENGTTLTDGEHDLIVYKVD 134 (196)
T ss_pred cCCCCCceeEEEecChhhC-CCeEEEEEEEeeccccccCCCCCceEEEEEeeeccCCcEEccCCEEEEEEEec
Confidence 4567899999999998777 578999999987632 234799999999997766 999999999999743
No 85
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=96.03 E-value=0.044 Score=51.46 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=56.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.++-||++.+..+++.. .+|..+.-+.++.|||.++|+|.-.++. ...|.|+||+....++...+|.+.++|=+
T Consensus 35 ~~dpyV~v~l~~~~~~~---~~T~v~~~~~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~L~~ 108 (123)
T cd08390 35 HCDPFVKVCLLPDERRS---LQSKVKRKTQNPNFDETFVFQVSFKELQ-RRTLRLSVYDVDRFSRHCIIGHVLFPLKD 108 (123)
T ss_pred CCCcEEEEEEeeCCCCc---eEeeeEcCCCCCccceEEEEEcCHHHhc-ccEEEEEEEECCcCCCCcEEEEEEEeccc
Confidence 35679999887655432 3565555556689999999998877774 35799999998766667899999999954
No 86
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=96.00 E-value=0.092 Score=50.44 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=53.1
Q ss_pred CCceEEEEEEEeCCc-ccccceecccccCCCCccccccEEeccccc-CcCccCceEEEEEeecCCCCceeEeEEEEee
Q 003462 52 RPELYVECALYIDGA-PFGLPMRTRLESMGPMYCWNEPITLSTKYR-DLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~-~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~-dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
.++-||.+.+-.+++ +-....+|..+.-+.++.|||.+.|++.-. ....++.|.|+|||....++...+|.+.++|
T Consensus 36 ~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l 113 (133)
T cd04009 36 SSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPL 113 (133)
T ss_pred CCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeH
Confidence 466788888764432 112334566554455688999999997643 3356789999999987655567899998877
No 87
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=95.97 E-value=0.081 Score=49.61 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=56.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+..++... ...+|..+.-+..+.|||.+.|++.-.+|. ...|.|.||+....++...+|.+.++|=+
T Consensus 35 ~~dpyv~v~l~~~~~~~-~~~kT~v~~~t~~P~wne~f~f~i~~~~l~-~~~l~i~v~d~~~~~~~~~iG~~~i~l~~ 110 (123)
T cd08521 35 RSNPYVKVYLLPDKSKQ-SKRKTSVKKNTTNPVFNETLKYHISKSQLE-TRTLQLSVWHHDRFGRNTFLGEVEIPLDS 110 (123)
T ss_pred CCCcEEEEEEecCCCcC-ceeeccccCCCCCCcccceEEEeCCHHHhC-CCEEEEEEEeCCCCcCCceeeEEEEeccc
Confidence 46779999988665432 234566555556789999999998877774 56899999997655566789999998843
No 88
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=95.96 E-value=0.07 Score=50.79 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=65.4
Q ss_pred CCeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEec-cc
Q 003462 16 LPVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLS-TK 94 (818)
Q Consensus 16 ~~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fp-I~ 94 (818)
..+.|+|..-.+-.+. .....++.||.+.+..+++. ..+|.-+.. .++.|||...|+ +.
T Consensus 16 ~~L~V~Vi~a~nL~~~----------------~~~~~~d~yVk~~llp~~~~---~~kTkv~~~-~nP~fnE~F~f~~i~ 75 (124)
T cd08389 16 RKLTVTVIRAQDIPTK----------------DRGGASSWQVHLVLLPSKKQ---RAKTKVQRG-PNPVFNETFTFSRVE 75 (124)
T ss_pred CEEEEEEEEecCCCch----------------hcCCCCCcEEEEEEccCCcc---eeecccccC-CCCcccCEEEECCCC
Confidence 3577777777763221 11234677998776655432 235554444 678899999999 77
Q ss_pred ccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 003462 95 YRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (818)
Q Consensus 95 ~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (818)
-.+|. +..|.|+||+...-++...+|.+.++|=+-
T Consensus 76 ~~~l~-~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l 110 (124)
T cd08389 76 PEELN-NMALRFRLYGVERMRKERLIGEKVVPLSQL 110 (124)
T ss_pred HHHhc-cCEEEEEEEECCCcccCceEEEEEEecccc
Confidence 77766 677999999987655677999999999654
No 89
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=95.90 E-value=0.068 Score=51.43 Aligned_cols=69 Identities=23% Similarity=0.405 Sum_probs=50.7
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
.+|-||++.+ +|+ ..+|..+.-...+.|||.+.|++ ..++....|.|+|||.....+...||.+.++|=
T Consensus 47 ~~DPYVkV~~--~~~----~~kT~vi~~t~nPvWNE~F~f~~--~~~~~~~~L~v~V~D~d~~s~dd~IG~~~i~l~ 115 (127)
T cd04032 47 STDGYVKVFF--GGQ----EKRTEVIWNNNNPRWNATFDFGS--VELSPGGKLRFEVWDRDNGWDDDLLGTCSVVPE 115 (127)
T ss_pred CCCeEEEEEE--CCc----cccCceecCCCCCcCCCEEEEec--ccCCCCCEEEEEEEeCCCCCCCCeeEEEEEEec
Confidence 4577888865 554 33565554445689999999973 344678899999999876656778999988773
No 90
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=95.87 E-value=0.065 Score=50.93 Aligned_cols=70 Identities=20% Similarity=0.212 Sum_probs=50.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
.+|-||.+.+ +++.. ..+|..+.-+..+.|||.+.|++ ..|.++.|.|+|||....++...+|.+.++|=
T Consensus 20 ~~DPYv~v~~--~~~~~--~~kT~~v~~t~nP~Wne~f~f~~---~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~ 89 (124)
T cd04037 20 KSDPYLKIKL--GKKKI--NDRDNYIPNTLNPVFGKMFELEA---TLPGNSILKISVMDYDLLGSDDLIGETVIDLE 89 (124)
T ss_pred CCCcEEEEEE--CCeec--cceeeEEECCCCCccceEEEEEe---cCCCCCEEEEEEEECCCCCCCceeEEEEEeec
Confidence 4566887776 44432 22344433355688999999986 45778999999999876556679999999884
No 91
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.75 E-value=0.048 Score=55.59 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=45.2
Q ss_pred CCCccccccEEecccccCcCccCceEEEEEeecCCCC---ceeEeEEEEeeeccccc-ccccceeEEeecC
Q 003462 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD---ERLVGGTTILLFNSKMQ-LKTGKQKLRLWPG 146 (818)
Q Consensus 80 ~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~---~~~vG~~~~~LFd~~~~-Lr~G~~~L~lWp~ 146 (818)
.+.+.|+|.+.+.+. -+|..++-|.||+|.++...+ ..++|.+-++|++ +|+ +..|.+.|.++..
T Consensus 69 ~k~P~f~deiKi~LP-~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~g~~i~dg~~~L~v~~~ 137 (184)
T PF14429_consen 69 NKNPQFNDEIKIQLP-PDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-NGTIIQDGEHELPVYKY 137 (184)
T ss_dssp -SS-EEEEEEEEEE--CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--TS-B--SEEEEEEEEE-
T ss_pred CCCCCccEEEEEEcC-chhcccEEEEEEEEeeccccccCccceeEEEEEEeee-CCeEecCCCEEEEEEEc
Confidence 356889999998777 467888999999999875431 2799999999999 776 8999999999854
No 92
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=95.73 E-value=0.067 Score=50.77 Aligned_cols=71 Identities=18% Similarity=0.181 Sum_probs=51.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEeccccc--CcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR--DLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~--dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
.+|-||++.+ +++ ..+|+.+.-+.++.|||.+.|++.-. +-+.+..|.|+|||...-++...+|.+.++|=
T Consensus 19 ~~dpYv~v~l--~~~----~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~ 91 (126)
T cd08682 19 TNDAYVIIQL--GKE----KYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLN 91 (126)
T ss_pred CCCceEEEEE--CCe----eeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHH
Confidence 4667988876 332 23565554456789999999987542 22567789999999865445678999999983
No 93
>PLN02952 phosphoinositide phospholipase C
Probab=95.71 E-value=0.057 Score=64.35 Aligned_cols=85 Identities=18% Similarity=0.341 Sum_probs=61.6
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
...|.||+++|+ |-|. +...+|..+.-.-++.|||.++|+|.. |.-|.|.|+|||.....+...+|++++|+
T Consensus 495 ~~~D~yV~V~i~--G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~---PELAllrf~V~D~D~~~~ddfiGq~~lPv-- 567 (599)
T PLN02952 495 SPPDFYTKMYIV--GVPADNAKKKTKIIEDNWYPAWNEEFSFPLTV---PELALLRIEVREYDMSEKDDFGGQTCLPV-- 567 (599)
T ss_pred CCCCceEEEEEe--ccCCCCcceeeeeccCCCCcccCCeeEEEEEc---CCccEEEEEEEecCCCCCCCeEEEEEcch--
Confidence 456889999988 2221 122345443222347799999999875 66699999999976555567899999999
Q ss_pred ccccccccceeEEee
Q 003462 130 SKMQLKTGKQKLRLW 144 (818)
Q Consensus 130 ~~~~Lr~G~~~L~lW 144 (818)
..||+|...+.|.
T Consensus 568 --~~Lr~GyR~VpL~ 580 (599)
T PLN02952 568 --SELRPGIRSVPLH 580 (599)
T ss_pred --hHhcCCceeEeCc
Confidence 4899999888764
No 94
>PLN02222 phosphoinositide phospholipase C 2
Probab=95.68 E-value=0.058 Score=64.07 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=63.2
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
...|.||+|.|+ |-|- +...+|..+.-.-.+.|||.++|+|. +|.=|.|.|+|||.........+|++++|+
T Consensus 477 ~~~dpyV~Vei~--G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~---~PeLAllRf~V~d~D~~~~ddfigq~~lPv-- 549 (581)
T PLN02222 477 SPPDFYTRVGIA--GVPGDTVMKKTKTLEDNWIPAWDEVFEFPLT---VPELALLRLEVHEYDMSEKDDFGGQTCLPV-- 549 (581)
T ss_pred CCCCeeEEEEEe--ccCCCcceeeeEecCCCCCcccCCeeEEEEE---cCceeEEEEEEEECCCCCCCcEEEEEEcch--
Confidence 567889999997 2221 12235554432234789999999986 466699999999975444566899999999
Q ss_pred ccccccccceeEEeec
Q 003462 130 SKMQLKTGKQKLRLWP 145 (818)
Q Consensus 130 ~~~~Lr~G~~~L~lWp 145 (818)
..||+|...+.|..
T Consensus 550 --~~Lr~GyR~V~L~~ 563 (581)
T PLN02222 550 --WELSQGIRAFPLHS 563 (581)
T ss_pred --hhhhCccceEEccC
Confidence 48999999998853
No 95
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=95.59 E-value=0.098 Score=45.19 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=54.1
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 003462 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (818)
...+.||++.+.. ....+|....-+..+.|||.+.|++.-. ....|.|.||+.........+|.+.+++-+-
T Consensus 18 ~~~~~~v~v~~~~-----~~~~~T~~~~~~~~P~w~~~~~~~~~~~---~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l 89 (102)
T cd00030 18 GKSDPYVKVSLGG-----KQKFKTKVVKNTLNPVWNETFEFPVLDP---ESDTLTVEVWDKDRFSKDDFLGEVEIPLSEL 89 (102)
T ss_pred CCCCcEEEEEecc-----CceEecceeCCCCCCcccceEEEEccCC---CCCEEEEEEEecCCCCCCceeEEEEEeHHHh
Confidence 3577788888775 1233455444445688999999997665 6788999999987665577999999998765
Q ss_pred c
Q 003462 131 K 131 (818)
Q Consensus 131 ~ 131 (818)
.
T Consensus 90 ~ 90 (102)
T cd00030 90 L 90 (102)
T ss_pred h
Confidence 4
No 96
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=95.57 E-value=0.19 Score=47.20 Aligned_cols=84 Identities=21% Similarity=0.324 Sum_probs=57.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCC-CccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGP-MYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~-~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (818)
..+-||++.+...+..-.....|....-.. .+.|||-++|++. .|..+.|.|.||+.... +...+|++.++|
T Consensus 24 ~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~---~~~~~~l~~~V~d~~~~-~~~~iG~~~~~l--- 96 (128)
T cd00275 24 IVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVT---VPELAFLRFVVYDEDSG-DDDFLGQACLPL--- 96 (128)
T ss_pred ccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEe---CCCeEEEEEEEEeCCCC-CCcEeEEEEEEh---
Confidence 467799999875442111233454433333 6889999999988 45567899999998765 667899999988
Q ss_pred cccccccceeEEe
Q 003462 131 KMQLKTGKQKLRL 143 (818)
Q Consensus 131 ~~~Lr~G~~~L~l 143 (818)
..|..|...+.+
T Consensus 97 -~~l~~g~~~~~l 108 (128)
T cd00275 97 -DSLRQGYRHVPL 108 (128)
T ss_pred -HHhcCceEEEEe
Confidence 345666655443
No 97
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=95.54 E-value=0.082 Score=49.57 Aligned_cols=70 Identities=23% Similarity=0.227 Sum_probs=49.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
.+|-||.+.+..++ ....+|..+.-+.++.|||.+.|++.-. ..+.|.|+|||.... +...+|.+.++|=
T Consensus 20 ~~Dpyv~v~~~~~~---~~~~kT~vv~~t~nP~Wne~f~f~i~~~---~~~~l~v~v~d~d~~-~~~~iG~~~~~l~ 89 (119)
T cd04036 20 TPDCYVELWLPTAS---DEKKRTKTIKNSINPVWNETFEFRIQSQ---VKNVLELTVMDEDYV-MDDHLGTVLFDVS 89 (119)
T ss_pred CCCcEEEEEEcCCC---CccCccceecCCCCCccceEEEEEeCcc---cCCEEEEEEEECCCC-CCcccEEEEEEHH
Confidence 46678888874222 1234566555455789999999987542 456799999997654 5668999999994
No 98
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=95.33 E-value=0.098 Score=53.16 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=56.9
Q ss_pred cccccCCCCccccccEEecccccCcCccCceEEEEEeecCCC-----CceeEeEEEEeeecc-cccccccceeEEeecCC
Q 003462 74 TRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-----DERLVGGTTILLFNS-KMQLKTGKQKLRLWPGK 147 (818)
Q Consensus 74 T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~-----~~~~vG~~~~~LFd~-~~~Lr~G~~~L~lWp~~ 147 (818)
|+.....+.+.|+|-+++.+.. ++..++-|.||+|+++... .+.++|.+-++|+++ ...++.|.+.|.+....
T Consensus 56 ~sv~~~~k~p~f~deiKi~LP~-~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~~i~dg~~~L~v~k~~ 134 (178)
T cd08679 56 TSVVYYHKNPVFNDEIKIQLPA-DLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGAFIKDGDHTLPVYKYD 134 (178)
T ss_pred EEEEEcCCCCCCceeEEEecCC-ccCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCcEEcCCCEEEEEEecC
Confidence 3333344578899999988744 4556899999999987433 367999999999995 45578899999998754
Q ss_pred C
Q 003462 148 E 148 (818)
Q Consensus 148 ~ 148 (818)
.
T Consensus 135 ~ 135 (178)
T cd08679 135 K 135 (178)
T ss_pred C
Confidence 3
No 99
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.27 E-value=0.052 Score=50.85 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=51.9
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
++-||.+.+-.+ ....+|..+.-+..+.|||.+.|++. +.+..|.|+|||.....+...+|.+.++|=+
T Consensus 24 ~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~----~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~ 92 (124)
T cd04044 24 VDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVN----SLTEPLNLTVYDFNDKRKDKLIGTAEFDLSS 92 (124)
T ss_pred CCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeC----CCCCEEEEEEEecCCCCCCceeEEEEEEHHH
Confidence 566888877432 23345655555667899999999876 5678999999998766567899999999754
No 100
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=95.21 E-value=0.26 Score=46.44 Aligned_cols=73 Identities=23% Similarity=0.220 Sum_probs=51.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEec-ccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLS-TKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fp-I~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
.++.||++.+..++... ...+|....-+..+.|||.+.|+ +.-.++ .+..|.|+|||.... +...+|.+.++|
T Consensus 35 ~~dpyv~v~~~~~~~~~-~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~-~~~~l~~~v~d~~~~-~~~~iG~~~i~l 108 (123)
T cd04035 35 LSDPYVKLNLLPGASKA-TKLRTKTVHKTRNPEFNETLTYYGITEEDI-QRKTLRLLVLDEDRF-GNDFLGETRIPL 108 (123)
T ss_pred CCCceEEEEEecCCCCC-CceeeeeecCCCCCCccceEEEcCCCHHHh-CCCEEEEEEEEcCCc-CCeeEEEEEEEc
Confidence 46789999986554422 23466665555678999999996 333332 245799999998665 667899999988
No 101
>PLN02230 phosphoinositide phospholipase C 4
Probab=95.10 E-value=0.098 Score=62.30 Aligned_cols=86 Identities=16% Similarity=0.309 Sum_probs=62.6
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
...|.||+|+|+- .|- +...+|.-+.=.-.+.|||..+||+. +|.=|.|.|.|||.....+...+|++++|+-
T Consensus 494 s~~DpyV~Vei~G--vp~D~~~~kT~v~~n~~nP~Wneef~F~l~---vPELAllRf~V~d~d~~~~ddfiGQ~~lPv~- 567 (598)
T PLN02230 494 SPPDFFVRVGIAG--APVDEVMEKTKIEYDTWTPIWNKEFIFPLA---VPELALLRVEVHEHDINEKDDFGGQTCLPVS- 567 (598)
T ss_pred CCCCceEEEEEEE--CCCCCcccceeccCCCCCCccCCeeEEEEE---cCceeEEEEEEEECCCCCCCCEEEEEEcchH-
Confidence 4578899999983 221 11224432111223779999999977 4778999999999765556678999999995
Q ss_pred ccccccccceeEEeec
Q 003462 130 SKMQLKTGKQKLRLWP 145 (818)
Q Consensus 130 ~~~~Lr~G~~~L~lWp 145 (818)
.||+|...+.|..
T Consensus 568 ---~Lr~GyR~V~L~~ 580 (598)
T PLN02230 568 ---EIRQGIHAVPLFN 580 (598)
T ss_pred ---HhhCccceEeccC
Confidence 8999999998753
No 102
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=95.06 E-value=0.13 Score=48.42 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=50.5
Q ss_pred CCceEEEEEEEeCCcccccceecccc-cCCCCccccccEEecccccCc-CccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLE-SMGPMYCWNEPITLSTKYRDL-TAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~-~~~~~~~Wnewl~fpI~~~dL-Pr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
..+-||.+.+.. ....+|... .-+..+.|||.+.|++.-..| ...+.|.|.|||.....+...+|++.++|=+
T Consensus 20 ~~dpYv~v~~~~-----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 94 (125)
T cd04051 20 KMKVYAVVWIDP-----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKD 94 (125)
T ss_pred CCceEEEEEECC-----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHH
Confidence 466788877642 122344432 224568899999998865544 4578899999997654456789999999865
No 103
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=95.06 E-value=0.17 Score=50.07 Aligned_cols=70 Identities=26% Similarity=0.391 Sum_probs=50.6
Q ss_pred CCCceEEEEEEEeCCcccccceecccccC-CCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 51 RRPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~-~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
..+|-||.+.+ |++ ..+|....- +..+.|||.++|++. + |.++.|+|+||+.....+...+|.+.++|=+
T Consensus 19 g~sDPYV~v~l--~~~----~~kTk~~~~~t~nP~WNE~F~f~v~--~-~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~ 89 (150)
T cd04019 19 RVPEVFVKAQL--GNQ----VLRTRPSQTRNGNPSWNEELMFVAA--E-PFEDHLILSVEDRVGPNKDEPLGRAVIPLND 89 (150)
T ss_pred CCCCeEEEEEE--CCE----EeeeEeccCCCCCCcccCcEEEEec--C-ccCCeEEEEEEEecCCCCCCeEEEEEEEHHH
Confidence 35677998887 443 224443322 356899999999874 2 5568999999998765556799999999875
No 104
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=95.05 E-value=0.15 Score=46.85 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=49.2
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
..++-||.+++ +| ....|+.+.-+..+.|||.+.|++.- |..+.|.|+|||... ...+|.+.++|-+
T Consensus 19 ~~~dpyv~v~~--~~----~~~kT~v~~~t~nP~Wne~f~f~v~~---~~~~~l~v~v~d~~~---~~~iG~~~i~l~~ 85 (105)
T cd04050 19 KEPSPYVELTV--GK----TTQKSKVKERTNNPVWEEGFTFLVRN---PENQELEIEVKDDKT---GKSLGSLTLPLSE 85 (105)
T ss_pred CCCCcEEEEEE--CC----EEEeCccccCCCCCcccceEEEEeCC---CCCCEEEEEEEECCC---CCccEEEEEEHHH
Confidence 35677888876 44 23456555445678999999999853 567799999999654 4579999999854
No 105
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=95.05 E-value=0.18 Score=47.75 Aligned_cols=69 Identities=20% Similarity=0.242 Sum_probs=48.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCC--ceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKD--ERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~--~~~vG~~~~~LFd 129 (818)
.++-||.+.+ +|. ...+|....-+.++.|||.++|++.. +..|.|+|||....+. ...+|.+.+++=+
T Consensus 20 ~~dpyv~v~~--~~~---~~~kT~v~~~t~nP~Wne~f~~~~~~-----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~ 89 (123)
T cd08382 20 LPDPFAVITV--DGG---QTHSTDVAKKTLDPKWNEHFDLTVGP-----SSIITIQVFDQKKFKKKDQGFLGCVRIRANA 89 (123)
T ss_pred CCCcEEEEEE--CCc---cceEccEEcCCCCCcccceEEEEeCC-----CCEEEEEEEECCCCCCCCCceEeEEEEEHHH
Confidence 4566887775 442 23356554445578999999999853 6799999999765332 4689999998865
Q ss_pred c
Q 003462 130 S 130 (818)
Q Consensus 130 ~ 130 (818)
-
T Consensus 90 l 90 (123)
T cd08382 90 V 90 (123)
T ss_pred c
Confidence 3
No 106
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=95.04 E-value=0.16 Score=48.15 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=53.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeeccc
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (818)
.++-||.+.+ +++.. .+|..+.-..++.|||.+.|++.- .+..|.|+|||....+....||.+.++|=+--
T Consensus 21 ~~DPYv~v~~--~~~~~---~kT~~~~~t~~P~Wne~f~~~v~~----~~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~ 91 (120)
T cd04045 21 KIDPYVRVLV--NGIVK---GRTVTISNTLNPVWDEVLYVPVTS----PNQKITLEVMDYEKVGKDRSLGSVEINVSDLI 91 (120)
T ss_pred CcCCEEEEEE--CCEEe---eceeEECCCcCCccCceEEEEecC----CCCEEEEEEEECCCCCCCCeeeEEEEeHHHhh
Confidence 4566888876 44322 344444445678999999998653 24699999999876556678999999964421
Q ss_pred ccccccceeE
Q 003462 132 MQLKTGKQKL 141 (818)
Q Consensus 132 ~~Lr~G~~~L 141 (818)
..-..|.+.+
T Consensus 92 ~~~~~~~~~~ 101 (120)
T cd04045 92 KKNEDGKYVE 101 (120)
T ss_pred CCCCCceEEe
Confidence 1123455444
No 107
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.97 E-value=0.19 Score=47.94 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=51.0
Q ss_pred CCceEEEEEEEeC--CcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYID--GAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~--~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+... ++... ..+|..+.-+.++.|||.+.|++. +.+..|.|+|||....++...+|.+.+++=+
T Consensus 20 ~~Dpyv~v~~~~~~~~~~~~-~~kT~v~~~t~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 94 (133)
T cd04033 20 ASDPYVKISLYDPDGNGEID-SVQTKTIKKTLNPKWNEEFFFRVN----PREHRLLFEVFDENRLTRDDFLGQVEVPLNN 94 (133)
T ss_pred CcCcEEEEEEECCCCCCccc-ceeeeEEcCCCCCcEeeEEEEEEc----CCCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 4566999988743 22222 335555444556889999999874 3357899999997765566789999998744
No 108
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=94.93 E-value=0.13 Score=48.77 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=49.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCC-CceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK-DERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~-~~~~vG~~~~~LF 128 (818)
.++-||.+.+ +++ ..+|+.+.-+.++.|||.+.|++.-..-..+..|.|+||+..... +...+|.+.++|=
T Consensus 20 ~~dpyv~v~~--~~~----~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~ 91 (127)
T cd04022 20 SSSAYVELDF--DGQ----KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGT 91 (127)
T ss_pred CcCcEEEEEE--CCE----EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHH
Confidence 4566877654 443 235555444556889999999976444334678999999965443 5668999999883
No 109
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.88 E-value=0.094 Score=52.00 Aligned_cols=70 Identities=20% Similarity=0.324 Sum_probs=53.4
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||++.+ +|+. .+|+.+.-+.++.|||-+.||+...++ +..|.|+|||.....+...+|.+.++|-+
T Consensus 34 ~~DPYV~V~~--~g~~----~kT~v~~~t~nPvWNE~f~f~v~~p~~--~~~l~~~v~D~d~~~~dd~iG~~~l~l~~ 103 (151)
T cd04018 34 LVDPYVEVSF--AGQK----VKTSVKKNSYNPEWNEQIVFPEMFPPL--CERIKIQIRDWDRVGNDDVIGTHFIDLSK 103 (151)
T ss_pred CcCcEEEEEE--CCEe----eecceEcCCCCCCcceEEEEEeeCCCc--CCEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence 4577998874 5543 467666555678999999999876543 46899999998765567799999999865
No 110
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=94.88 E-value=0.31 Score=48.80 Aligned_cols=74 Identities=24% Similarity=0.384 Sum_probs=52.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecc-cccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI-~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
.+|-||.+.+..++... ...+|.-+.-+.++.|||.+.|++ ...+| .+..|.|+|||...-++...+|.+.+++
T Consensus 47 ~~DPYVkv~l~~~~~~~-~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l-~~~~L~i~V~d~d~~~~d~~lG~v~i~l 121 (162)
T cd04020 47 TSDSFVKCYLLPDKSKK-SKQKTPVVKKSVNPVWNHTFVYDGVSPEDL-SQACLELTVWDHDKLSSNDFLGGVRLGL 121 (162)
T ss_pred CCCCEEEEEEEcCCCCC-cceeCCccCCCCCCCCCCEEEEecCCHHHh-CCCEEEEEEEeCCCCCCCceEEEEEEeC
Confidence 45669999887554332 123455443345688999999984 45666 3578999999976655677899999887
No 111
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=94.86 E-value=0.093 Score=48.85 Aligned_cols=68 Identities=12% Similarity=0.064 Sum_probs=50.0
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
+|=||.+.+ +++. .+|..+.-..++.|||.+.|++. +...+..|.|.|||....+....+|.+.++|=
T Consensus 26 ~DPYv~v~~--~~~~----~kT~v~~~t~nPvWne~f~f~v~--~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~L~ 93 (108)
T cd04039 26 MDPFVIISF--GRRV----FRTSWRRHTLNPVFNERLAFEVY--PHEKNFDIQFKVLDKDKFSFNDYVATGSLSVQ 93 (108)
T ss_pred cCceEEEEE--CCEe----EeeeeecCCCCCcccceEEEEEe--CccCCCEEEEEEEECCCCCCCcceEEEEEEHH
Confidence 456888775 4332 25666655667899999999875 33345789999999876666778999999985
No 112
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=94.85 E-value=0.19 Score=47.18 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=47.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
.+|-||.+.+ +|+.. .+|....-+..+.|||.+.|++. ++ +..|.|+|||.....+...+|.+.++|=
T Consensus 20 ~~Dpyv~v~~--~~~~~---~kT~~~~~t~nP~Wne~f~f~v~--~~--~~~l~~~v~D~d~~~~~~~iG~~~~~l~ 87 (121)
T cd04042 20 TSDPYVKFKY--GGKTV---YKSKTIYKNLNPVWDEKFTLPIE--DV--TQPLYIKVFDYDRGLTDDFMGSAFVDLS 87 (121)
T ss_pred CCCCeEEEEE--CCEEE---EEeeeccCCCCCccceeEEEEec--CC--CCeEEEEEEeCCCCCCCcceEEEEEEHH
Confidence 3566887764 44332 23433333456889999999864 32 5789999999876556679999999983
No 113
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=94.79 E-value=0.24 Score=47.17 Aligned_cols=66 Identities=30% Similarity=0.532 Sum_probs=48.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
.++-||.+.+ +|+ ...+|....-+..+.|||.+.|++. ....|.|+|||....+....+|.+.++|
T Consensus 21 ~~dPyv~v~~--~~~---~~~kT~v~~~t~~P~Wne~f~~~~~-----~~~~l~~~V~d~~~~~~~~~iG~~~i~l 86 (125)
T cd04021 21 KPDPYVEVTV--DGQ---PPKKTEVSKKTSNPKWNEHFTVLVT-----PQSTLEFKVWSHHTLKADVLLGEASLDL 86 (125)
T ss_pred CCCeEEEEEE--CCc---ccEEeeeeCCCCCCccccEEEEEeC-----CCCEEEEEEEeCCCCCCCcEEEEEEEEH
Confidence 3566887765 454 2335554444557899999999864 4578999999987655678999999997
No 114
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=94.75 E-value=0.24 Score=48.03 Aligned_cols=69 Identities=22% Similarity=0.344 Sum_probs=50.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+ +++ ..+|..+.-+.++.|||.+.|++. + +.+..|.|+|||...-.+...+|.++++|=+
T Consensus 35 ~~DPYv~v~~--~~~----~~kT~vi~~t~nP~Wne~f~f~v~--~-~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~ 103 (136)
T cd08375 35 KSDPYCEVSM--GSQ----EHKTKVVSDTLNPKWNSSMQFFVK--D-LEQDVLCITVFDRDFFSPDDFLGRTEIRVAD 103 (136)
T ss_pred CcCcEEEEEE--CCE----eeeccccCCCCCCccCceEEEEec--C-ccCCEEEEEEEECCCCCCCCeeEEEEEEHHH
Confidence 4666888765 443 235655555567899999999874 3 4467999999997654556799999999954
No 115
>PLN02223 phosphoinositide phospholipase C
Probab=94.68 E-value=0.18 Score=59.27 Aligned_cols=86 Identities=22% Similarity=0.438 Sum_probs=61.3
Q ss_pred CCCceEEEEEEEeCCccc-ccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 51 RRPELYVECALYIDGAPF-GLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
...|.||+++|+ |.|- +.-.+|..+.=+-.+.|||..+|+|.. |--|.|.|+|||.....+...+|.+++|+
T Consensus 433 s~~DpyV~VeI~--Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~---PELAlLrf~V~D~D~~~~ddfiGQ~~LPv-- 505 (537)
T PLN02223 433 SKPDLYVRISIA--GVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTY---PDLALISFEVYDYEVSTADAFCGQTCLPV-- 505 (537)
T ss_pred CCCCeEEEEEEe--eccCCcceeEEEeCCCCcCceecceeEEEEEc---cCceEEEEEEEecCCCCCCcEEEEEecch--
Confidence 457889999997 2221 112234322111237799999999854 77899999999987555567899999998
Q ss_pred ccccccccceeEEeec
Q 003462 130 SKMQLKTGKQKLRLWP 145 (818)
Q Consensus 130 ~~~~Lr~G~~~L~lWp 145 (818)
..||+|...+.|..
T Consensus 506 --~~Lr~GyR~VpL~~ 519 (537)
T PLN02223 506 --SELIEGIRAVPLYD 519 (537)
T ss_pred --HHhcCCceeEeccC
Confidence 58999999987753
No 116
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=94.60 E-value=0.4 Score=45.64 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=51.4
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
..+-||++.+-..+. ....-+|..+.-...+.|||.+.|++.-.+ .+..|.|+|||.....+...+|.+.++|
T Consensus 33 ~~dpyv~v~~~~~~~-~~~~~rT~v~~~~~~P~wne~f~~~~~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l 105 (131)
T cd04026 33 LSDPYVKLKLIPDPK-NETKQKTKTIKKTLNPVWNETFTFDLKPAD--KDRRLSIEVWDWDRTTRNDFMGSLSFGV 105 (131)
T ss_pred CCCCcEEEEEEcCCC-CCceecceeecCCCCCCccceEEEeCCchh--cCCEEEEEEEECCCCCCcceeEEEEEeH
Confidence 356789888864332 122334554444556899999999976544 3578999999976545667999999998
No 117
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=94.60 E-value=0.3 Score=45.32 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=50.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+ +++ ..+|+.+.-+..+.|||.+.|++.- +.+..|.|+|||.....+...+|.+.++|=+
T Consensus 20 ~~dPyv~v~~--~~~----~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~ 88 (116)
T cd08376 20 LSDPYVKFRL--GNE----KYKSKVCSKTLNPQWLEQFDLHLFD---DQSQILEIEVWDKDTGKKDEFIGRCEIDLSA 88 (116)
T ss_pred CCCcEEEEEE--CCE----eEecccccCCCCCceeEEEEEEecC---CCCCEEEEEEEECCCCCCCCeEEEEEEeHHH
Confidence 3566888876 443 2355555445678899999998752 2478999999998765567899999999853
No 118
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=94.45 E-value=0.35 Score=45.51 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=48.9
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
+|-||.+.+ ++.. .+|..+.-+..+.|||.+.|++.-. .++.|.|+|||....++...+|.+.++|=+
T Consensus 21 ~DPyv~v~~--~~~~----~kT~v~~~t~nP~Wne~f~f~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (123)
T cd04025 21 SDPFVRVFY--NGQT----LETSVVKKSCYPRWNEVFEFELMEG---ADSPLSVEVWDWDLVSKNDFLGKVVFSIQT 88 (123)
T ss_pred cCceEEEEE--CCEE----EeceeecCCCCCccCcEEEEEcCCC---CCCEEEEEEEECCCCCCCcEeEEEEEEHHH
Confidence 456887764 4432 3555544455688999999997653 378899999997655556789999999843
No 119
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=94.44 E-value=0.31 Score=45.15 Aligned_cols=69 Identities=23% Similarity=0.376 Sum_probs=50.1
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
++-||.+.+ +++. .-+|..+.-+..+.|||-+.|++.-. .+..|.|.||+....++...+|.+.+++=+
T Consensus 20 ~dpyv~v~~--~~~~---~~~T~v~~~~~~P~Wne~f~~~~~~~---~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (115)
T cd04040 20 SDPFVKFYL--NGEK---VFKTKTIKKTLNPVWNESFEVPVPSR---VRAVLKVEVYDWDRGGKDDLLGSAYIDLSD 88 (115)
T ss_pred CCCeEEEEE--CCCc---ceeeceecCCCCCcccccEEEEeccC---CCCEEEEEEEeCCCCCCCCceEEEEEEHHH
Confidence 466888876 3422 23555554456789999999987532 567899999998765566789999999865
No 120
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=94.31 E-value=0.17 Score=46.89 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=50.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccC-cCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRD-LTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~d-LPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+- ++ ..+|..+.-+.++.|||.+.|++.... -..++.|.|+|||....++...+|.++++|=+
T Consensus 20 ~~dpyv~v~~~--~~----~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~ 92 (111)
T cd04011 20 NIDPVVKVEVG--GQ----KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGT 92 (111)
T ss_pred CCCCEEEEEEC--CE----eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCcc
Confidence 35668877763 43 335555444456889999999976533 22367899999997655556789999999864
No 121
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=94.20 E-value=0.36 Score=46.01 Aligned_cols=70 Identities=17% Similarity=0.328 Sum_probs=48.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (818)
.+|-||.+.+ +++.. .+|..+. +.++.|||.+.|++.-.++ ..+.|.|||-....+...||.+.++|-+-
T Consensus 21 ~~DPYv~v~l--~~~~~---~kT~v~~-~~nP~WnE~f~f~~~~~~~---~~l~v~v~d~~~~~~d~~iG~v~i~l~~l 90 (126)
T cd08400 21 VPHPYCVISL--NEVKV---ARTKVRE-GPNPVWSEEFVFDDLPPDV---NSFTISLSNKAKRSKDSEIAEVTVQLSKL 90 (126)
T ss_pred CCCeeEEEEE--CCEeE---EEeecCC-CCCCccCCEEEEecCCCCc---CEEEEEEEECCCCCCCCeEEEEEEEHhHc
Confidence 3567888888 44332 2444333 4568899999998533222 46889999976655677999999998753
No 122
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=94.20 E-value=0.31 Score=46.26 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=50.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+ ++. ....+|..+.-+.++.|||-+.|++. +.+..|.|.|||.....+...+|.+.++|=+
T Consensus 17 ~~dpyv~v~~--~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~----~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~ 86 (126)
T cd08678 17 SSNPYCVLEM--DEP--PQKYQSSTQKNTSNPFWDEHFLFELS----PNSKELLFEVYDNGKKSDSKFLGLAIVPFDE 86 (126)
T ss_pred CcCCEEEEEE--CCC--CcEEEeEEEecCCCCccCceEEEEeC----CCCCEEEEEEEECCCCCCCceEEEEEEeHHH
Confidence 4666888876 221 12245655544457899999999974 3467899999998776667899999999854
No 123
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=94.08 E-value=0.4 Score=46.11 Aligned_cols=68 Identities=24% Similarity=0.242 Sum_probs=49.4
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCC------CCceeEeEEE
Q 003462 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG------KDERLVGGTT 124 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~------~~~~~vG~~~ 124 (818)
..+|-||.+.+ |++. .+|+-+.-+.++.|||...|++.- | ++.|.|+|||...- .+...+|-+.
T Consensus 22 g~sDPYv~i~~--g~~~----~rTk~~~~~~nP~WnE~f~f~v~~---~-~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~ 91 (126)
T cd08379 22 GSTDAYCVAKY--GPKW----VRTRTVEDSSNPRWNEQYTWPVYD---P-CTVLTVGVFDNSQSHWKEAVQPDVLIGKVR 91 (126)
T ss_pred CCCCeeEEEEE--CCEE----eEcCcccCCCCCcceeEEEEEecC---C-CCEEEEEEEECCCccccccCCCCceEEEEE
Confidence 35677999885 5553 356655556678999999999752 2 35899999997653 2567899999
Q ss_pred Eeee
Q 003462 125 ILLF 128 (818)
Q Consensus 125 ~~LF 128 (818)
++|=
T Consensus 92 i~l~ 95 (126)
T cd08379 92 IRLS 95 (126)
T ss_pred EEHH
Confidence 9864
No 124
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=94.03 E-value=0.49 Score=47.23 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=55.6
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEeccccc------CcCccCceEEEEEeecCC-CCceeEeEE
Q 003462 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR------DLTAHSQLALTVWDVSCG-KDERLVGGT 123 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~------dLPr~a~L~~ti~~~~~~-~~~~~vG~~ 123 (818)
..+|-||...+...+.. ....+|+.+.-+.++.|||..+|+|.-. .+++.+ |.|+||+..+- .+...+|.+
T Consensus 23 ~~~DpYVk~~l~~p~~~-~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~-L~~~V~d~~~f~~~D~~iG~~ 100 (155)
T cd08690 23 KDLDTYVKFEFPYPNEE-PQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHG-LKFEVYHKGGFLRSDKLLGTA 100 (155)
T ss_pred CCCCeEEEEEEecCCCC-CceeecCcccCCCCCcccceEEEEeccccchhhhhccCCc-EEEEEEeCCCcccCCCeeEEE
Confidence 35788999997544321 1244677766677799999999998655 477655 99999997642 356789999
Q ss_pred EEeeec
Q 003462 124 TILLFN 129 (818)
Q Consensus 124 ~~~LFd 129 (818)
.++|=+
T Consensus 101 ~i~L~~ 106 (155)
T cd08690 101 QVKLEP 106 (155)
T ss_pred EEEccc
Confidence 888844
No 125
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=93.95 E-value=0.25 Score=50.66 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=53.6
Q ss_pred CCCCccccccEEecccccCcCccCceEEEEEeecCC---------CCceeEeEEEEeeecccccccccceeEEeec
Q 003462 79 MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG---------KDERLVGGTTILLFNSKMQLKTGKQKLRLWP 145 (818)
Q Consensus 79 ~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~---------~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp 145 (818)
..+.+.|+|-|++.+.. +|....-|-||+|.++.. ..+.++|-+-++|+...++|..|.+.|.+-.
T Consensus 65 h~k~P~f~dEiKI~LP~-~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~~~~~l~~g~~~LpV~~ 139 (185)
T cd08697 65 HNQNPEFYDEIKIELPT-QLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLKDKGRLNSEEQTPPVAN 139 (185)
T ss_pred cCCCCccceeEEEecCC-cCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeecCCCEEecCCEeeeEEe
Confidence 34668899998887666 456788999999998721 1246899999999998899999999999864
No 126
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.91 E-value=0.45 Score=45.09 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=48.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
.++-||.+.+ ++. +.+|....-...+.|||.+.|++.-.. ..+..|.|+||+.....+...+|.+.++|
T Consensus 14 ~~Dpyv~v~~--~~~----~~kT~v~~~~~nP~Wne~f~f~~~~~~-~~~~~l~~~v~d~~~~~~d~~iG~~~~~l 82 (127)
T cd08373 14 KGDRIAKVTF--RGV----KKKTRVLENELNPVWNETFEWPLAGSP-DPDESLEIVVKDYEKVGRNRLIGSATVSL 82 (127)
T ss_pred CCCCEEEEEE--CCE----eeecceeCCCcCCcccceEEEEeCCCc-CCCCEEEEEEEECCCCCCCceEEEEEEEh
Confidence 3555777765 443 345655544456889999999975433 46788999999987655556888888775
No 127
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=93.88 E-value=0.2 Score=47.82 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=48.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+ +++.. -+|+.+.-+..+.|||-++|++. ..+.|.|.||+-....+...+|.+.++|=+
T Consensus 34 ~~dpyv~v~~--~~~~~---~kT~~~~~t~~P~Wne~f~~~v~-----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~ 101 (132)
T cd04014 34 LLDPYVSIDV--DDTHI---GKTSTKPKTNSPVWNEEFTTEVH-----NGRNLELTVFHDAAIGPDDFVANCTISFED 101 (132)
T ss_pred CcCcEEEEEE--CCEEE---eEEeEcCCCCCCCcceeEEEEcC-----CCCEEEEEEEeCCCCCCCceEEEEEEEhHH
Confidence 4677888876 45432 13433333556889999999985 568999999986544455689999999843
No 128
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=93.83 E-value=0.48 Score=44.63 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=47.3
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
.++-||.+.+ ++.. ....+|..+.-+..+.|||-+.|++.-. ....|.|+||+....++...+|.+.++|
T Consensus 21 ~~Dpyv~v~~--~~~~-~~~~kT~~~~~t~~P~Wne~f~f~i~~~---~~~~L~i~v~d~d~~~~~~~iG~~~i~l 90 (126)
T cd04043 21 LSDPYVTLVD--TNGK-RRIAKTRTIYDTLNPRWDEEFELEVPAG---EPLWISATVWDRSFVGKHDLCGRASLKL 90 (126)
T ss_pred CCCceEEEEE--CCCC-eeeecccEecCCCCCcccceEEEEcCCC---CCCEEEEEEEECCCCCCCceEEEEEEec
Confidence 4566887753 2221 0122454443345688999999997553 4678999999987655667899999987
No 129
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=93.67 E-value=0.48 Score=44.59 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=49.1
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
++-||.+.+ +++. .+|+.+.-+.++.|||.+.|++.- +.+..|.|+|||.....+...+|.++++|=+
T Consensus 24 ~dPyv~v~~--~~~~----~kT~~~~~t~~P~Wne~f~~~~~~---~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~ 91 (128)
T cd04024 24 SDPYAILSV--GAQR----FKTQTIPNTLNPKWNYWCEFPIFS---AQNQLLKLILWDKDRFAGKDYLGEFDIALEE 91 (128)
T ss_pred cCCeEEEEE--CCEE----EecceecCCcCCccCCcEEEEecC---CCCCEEEEEEEECCCCCCCCcceEEEEEHHH
Confidence 455776654 4432 356555445678999999998754 5678999999997765556789999999854
No 130
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=93.65 E-value=0.19 Score=47.29 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=53.9
Q ss_pred CCceEEEEEEEeCC-cccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecC----CCCceeEeEEEEe
Q 003462 52 RPELYVECALYIDG-APFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSC----GKDERLVGGTTIL 126 (818)
Q Consensus 52 ~~~l~V~~~l~~~~-~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~----~~~~~~vG~~~~~ 126 (818)
.+|-||.+.+..+. .......+|..+.-...+.|||.+.|++.. +....|.|+|||... .++...+|.+.++
T Consensus 20 ~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~---~~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~ 96 (120)
T cd04048 20 KSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF---EEVQKLRFEVYDVDSKSKDLSDHDFLGEAECT 96 (120)
T ss_pred CCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe---EeeeEEEEEEEEecCCcCCCCCCcEEEEEEEE
Confidence 35668888876543 112234467766656678999999999654 445689999999875 4566789999999
Q ss_pred eec
Q 003462 127 LFN 129 (818)
Q Consensus 127 LFd 129 (818)
+=+
T Consensus 97 l~~ 99 (120)
T cd04048 97 LGE 99 (120)
T ss_pred HHH
Confidence 864
No 131
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=93.47 E-value=0.52 Score=43.89 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=47.0
Q ss_pred CCceEEEEEEEeCCcccccceeccccc-CCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLES-MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~-~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.++-||.+.+ +++ ..+|+.+. -+.++.|||-++|++.. +.+..|.|+|||....+ ...+|.+.+++=+
T Consensus 21 ~~dpyv~v~~--~~~----~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~~l~i~v~d~~~~~-~~~iG~~~~~l~~ 89 (118)
T cd08681 21 KQDPYCVLRI--GGV----TKKTKTDFRGGQHPEWDEELRFEITE---DKKPILKVAVFDDDKRK-PDLIGDTEVDLSP 89 (118)
T ss_pred CCCceEEEEE--CCC----ccccccccCCCCCCccCceEEEEecC---CCCCEEEEEEEeCCCCC-CcceEEEEEecHH
Confidence 3566888875 331 22344322 12468899999999865 35678999999976543 6789999999854
No 132
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=93.44 E-value=0.58 Score=46.06 Aligned_cols=66 Identities=27% Similarity=0.374 Sum_probs=48.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
.+|-||.+.+ +++ ..+|+.+.-+..+.|||-++|++. + | ...|.|+|||.........+|.+.+++
T Consensus 21 ~sDPYV~v~~--g~~----~~kT~vvk~t~nP~WnE~f~f~i~--~-~-~~~l~~~V~D~d~~~~dd~iG~a~i~l 86 (145)
T cd04038 21 SSDPYVVLTL--GNQ----KVKTRVIKKNLNPVWNEELTLSVP--N-P-MAPLKLEVFDKDTFSKDDSMGEAEIDL 86 (145)
T ss_pred CcCcEEEEEE--CCE----EEEeeeEcCCCCCeecccEEEEec--C-C-CCEEEEEEEECCCCCCCCEEEEEEEEH
Confidence 4566888775 443 346666554566899999999975 2 2 778999999987655667899999877
No 133
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=93.20 E-value=0.71 Score=43.48 Aligned_cols=72 Identities=21% Similarity=0.332 Sum_probs=50.3
Q ss_pred CCceEEEEEEEeCCcccccceeccccc-CCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLES-MGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~-~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.++-||.+.+ ++.. ..|+... -+..+.|||-+.|++.-.+...+..|.|.|||.....+...+|.+.++|=+
T Consensus 21 ~~dpyv~v~~--~~~~----~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~ 93 (124)
T cd04049 21 KIDPYVIIQC--RTQE----RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKG 93 (124)
T ss_pred CcCceEEEEE--CCEe----eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHH
Confidence 3556888765 3332 2343322 134688999999998776655678899999997654456789999999843
No 134
>PLN02228 Phosphoinositide phospholipase C
Probab=93.05 E-value=0.6 Score=55.56 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=61.4
Q ss_pred CCCceEEEEEEEeCCcccc-cceecccccCCCCccc-cccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 51 RRPELYVECALYIDGAPFG-LPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~-~p~~T~~~~~~~~~~W-newl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
...+.||+++|+- -|.. ...+|....-.-.+.| ||.++|++. +|.=|.|.|+|+|.........+|+.++++
T Consensus 456 ~~~DpyV~Vei~G--~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~---~pELA~lRf~V~D~d~~~~d~figq~~lPv- 529 (567)
T PLN02228 456 SPPDFFVKIGIAG--VPRDTVSYRTETAVDQWFPIWGNDEFLFQLR---VPELALLWFKVQDYDNDTQNDFAGQTCLPL- 529 (567)
T ss_pred CCCCcEEEEEEEe--cCCCCCcceeeccCCCCCceECCCeEEEEEE---cCceeEEEEEEEeCCCCCCCCEEEEEEcch-
Confidence 4578899999972 2211 1224443221124789 999999976 577899999999976544566889999999
Q ss_pred cccccccccceeEEee
Q 003462 129 NSKMQLKTGKQKLRLW 144 (818)
Q Consensus 129 d~~~~Lr~G~~~L~lW 144 (818)
..||+|...+.|.
T Consensus 530 ---~~Lr~GYR~VpL~ 542 (567)
T PLN02228 530 ---PELKSGVRAVRLH 542 (567)
T ss_pred ---hHhhCCeeEEEcc
Confidence 4899999999884
No 135
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=93.01 E-value=0.24 Score=50.89 Aligned_cols=67 Identities=21% Similarity=0.327 Sum_probs=55.1
Q ss_pred CCCccccccEEecccccCcCccCceEEEEEeecCC--CCceeEeEEEEeeeccc-ccccccceeEEeecCC
Q 003462 80 GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG--KDERLVGGTTILLFNSK-MQLKTGKQKLRLWPGK 147 (818)
Q Consensus 80 ~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~--~~~~~vG~~~~~LFd~~-~~Lr~G~~~L~lWp~~ 147 (818)
.+.+.|||.|.+.|...+.+ .+-|.||++-++.. +++.|+|-+-++|++.+ -+|+.|.+.|.+|...
T Consensus 63 ~~~P~W~EtiKi~lP~~~~~-~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~~~gt~l~Dg~H~L~vyk~d 132 (189)
T cd08695 63 NNSPRWNETIKLPIPIDKFR-GSHLRFEFRHCSTKDKGEKKLFGFSFVPLMREDGTTLPDGSHELYVYKCD 132 (189)
T ss_pred CCCCCCceeEEEecChhhCC-CeeEEEEEEEeeeccCCCCCceEEEEEeecccCCcEEcCCcEEEEEEecc
Confidence 35678999999999987765 67999999987653 23479999999999985 6789999999999743
No 136
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=92.90 E-value=0.74 Score=43.59 Aligned_cols=68 Identities=22% Similarity=0.303 Sum_probs=47.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+ +++ ..+|.-+.-+.++.|||.+.|++. + +.+..|.|+|||.... +...+|.++++|=+
T Consensus 16 ~~Dpyv~v~l--~~~----~~kT~v~~~t~nP~Wne~F~f~~~--~-~~~~~L~~~v~d~d~~-~~~~lG~~~i~l~~ 83 (121)
T cd08378 16 SNDPVVEVKL--GNY----KGSTKAIERTSNPEWNQVFAFSKD--R-LQGSTLEVSVWDKDKA-KDDFLGGVCFDLSE 83 (121)
T ss_pred cCCCEEEEEE--CCc----cccccccCCCCCCccceEEEEEcC--C-CcCCEEEEEEEeCCCC-cCceeeeEEEEhHh
Confidence 3566888886 332 335554443456899999999853 2 3678899999997543 55689999988754
No 137
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=92.80 E-value=0.95 Score=42.05 Aligned_cols=68 Identities=25% Similarity=0.358 Sum_probs=47.8
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.+|-||.+.+ ++.. .+|....-+.++.|||.+.|++. ++ ...|.|+|||.....+...+|.+.+++-+
T Consensus 21 ~~dPyv~v~~--~~~~----~~T~~~~~t~nP~W~e~f~~~~~--~~--~~~l~~~v~d~~~~~~~~~iG~~~~~l~~ 88 (119)
T cd08377 21 KSDPFCVLEL--VNAR----LQTHTIYKTLNPEWNKIFTFPIK--DI--HDVLEVTVYDEDKDKKPEFLGKVAIPLLS 88 (119)
T ss_pred CCCcEEEEEE--CCEe----eecceecCCcCCccCcEEEEEec--Cc--CCEEEEEEEECCCCCCCceeeEEEEEHHH
Confidence 3566888776 3322 35554443456889999999864 32 57899999997654566789999999855
No 138
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=92.80 E-value=0.35 Score=47.80 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=52.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccc--------cCcC----ccCceEEEEEeecCCCCcee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKY--------RDLT----AHSQLALTVWDVSCGKDERL 119 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~--------~dLP----r~a~L~~ti~~~~~~~~~~~ 119 (818)
.+|-||.+.+..+.+.- ...+|+-+.-+.++.|||.+.|++.. -++| ....|.|+||+.........
T Consensus 18 ~sDPYV~V~l~~~~~k~-~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddf 96 (148)
T cd04010 18 TCDPYASVTLIYSNKKQ-DTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVF 96 (148)
T ss_pred CCCceEEEEEeCCcccC-cccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCCCCCce
Confidence 46679998887543321 12345544445568899999999852 1233 24679999999766556679
Q ss_pred EeEEEEeeec
Q 003462 120 VGGTTILLFN 129 (818)
Q Consensus 120 vG~~~~~LFd 129 (818)
+|.+.++|=+
T Consensus 97 LG~v~i~l~~ 106 (148)
T cd04010 97 LGEVRIPLRG 106 (148)
T ss_pred eEEEEEeccc
Confidence 9999998754
No 139
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=92.78 E-value=0.39 Score=44.57 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=47.7
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
++-||.+.+ +++. ..+|+.+.-+.++.|||.+.|++. + +.+..|.|+|||-..- +...+|.+.++|=
T Consensus 13 ~dPYv~v~v--~~~~---~~kT~v~~~t~nP~Wne~f~f~v~--~-~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~ 79 (111)
T cd04052 13 LSPYAELYL--NGKL---VYTTRVKKKTNNPSWNASTEFLVT--D-RRKSRVTVVVKDDRDR-HDPVLGSVSISLN 79 (111)
T ss_pred CCceEEEEE--CCEE---EEEEeeeccCCCCccCCceEEEec--C-cCCCEEEEEEEECCCC-CCCeEEEEEecHH
Confidence 566888877 4432 224444333567889999999874 2 3577899999997654 5678999999974
No 140
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.78 E-value=0.35 Score=58.20 Aligned_cols=107 Identities=22% Similarity=0.384 Sum_probs=72.1
Q ss_pred eEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCccc-ccceecccccC-CCCccccccEEecccc
Q 003462 18 VKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPF-GLPMRTRLESM-GPMYCWNEPITLSTKY 95 (818)
Q Consensus 18 ~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l-~~p~~T~~~~~-~~~~~Wnewl~fpI~~ 95 (818)
++|||.+=+|..+.... +.......++++|++ + |-|. |.--+|.++.- +-.+.|+|-.+|++.+
T Consensus 618 L~IkI~sGq~~~~~~~~----------~~~~~~~dP~v~VeI---~-Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~v 683 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGK----------TKFGEISDPDVYVEI---A-GVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSV 683 (746)
T ss_pred eEEEEEecCcccCCCCC----------CcccccCCCCEEEEE---c-ccccchhhhhceeeccCCcCcccCCeEEEEEec
Confidence 67777777765443211 222333457777772 2 3332 22235554321 1136799999999988
Q ss_pred cCcCccCceEEEEEeecCCCCceeEeEEEEeeecccccccccceeEEeec
Q 003462 96 RDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLKTGKQKLRLWP 145 (818)
Q Consensus 96 ~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr~G~~~L~lWp 145 (818)
-+| |.|.|.|+|....++.-.+|-+++|+ ..|++|...+++.-
T Consensus 684 PEL---AliRF~V~d~d~~~~ddF~GQ~tlP~----~~L~~GyRhVpL~~ 726 (746)
T KOG0169|consen 684 PEL---ALIRFEVHDYDYIGKDDFIGQTTLPV----SELRQGYRHVPLLS 726 (746)
T ss_pred cce---eEEEEEEEecCCCCcccccceeeccH----HHhhCceeeeeecC
Confidence 776 88999999988777778899999998 58999999998853
No 141
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=92.74 E-value=0.32 Score=47.27 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=54.3
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCc--------------------CccCceEEEEEe
Q 003462 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDL--------------------TAHSQLALTVWD 110 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dL--------------------Pr~a~L~~ti~~ 110 (818)
..+|+||.+-|-.. +.-..-+.+-|.+......||+.+.||+.|... =..+.|.++|||
T Consensus 23 ~~sD~yVK~~L~~~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD 101 (133)
T cd08374 23 KMSDIYVKGWLDGL-EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWD 101 (133)
T ss_pred cccCeEEEEEEccC-cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEEEEEE
Confidence 46999999988764 333334455666666668899999999888322 235789999998
Q ss_pred ecCCCCceeEeEEEEeee
Q 003462 111 VSCGKDERLVGGTTILLF 128 (818)
Q Consensus 111 ~~~~~~~~~vG~~~~~LF 128 (818)
...-.....+|.+.++|=
T Consensus 102 ~D~~s~dd~iG~~~l~l~ 119 (133)
T cd08374 102 NDKFSPDDFLGSLELDLS 119 (133)
T ss_pred CcccCCCCcceEEEEEhh
Confidence 775444557888877763
No 142
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=92.47 E-value=0.42 Score=43.97 Aligned_cols=74 Identities=15% Similarity=0.241 Sum_probs=49.9
Q ss_pred CCceEEEEEEEeCC-cccccceecccccCCCCccccccEEecccccCcCc---cCceEEEEEeecCCCCceeEeEEEEee
Q 003462 52 RPELYVECALYIDG-APFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTA---HSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 52 ~~~l~V~~~l~~~~-~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr---~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
.+|-||.+.+..++ +.. ...+|....-+..+.|| +|.+.+.+|.. +..|.|+|||....++...+|.++++|
T Consensus 20 ~~DPyv~v~~~~~~~~~~-~~~kT~vi~~t~nP~Wn---~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l 95 (110)
T cd04047 20 KSDPFLEISRQSEDGTWV-LVYRTEVIKNTLNPVWK---PFTIPLQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTL 95 (110)
T ss_pred CCCeeEEEEEECCCCCEE-EEEeeeEeccCCCCceE---EEEEEHHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEH
Confidence 45668888765332 222 23356555555678899 45555555543 689999999987666678999999988
Q ss_pred ec
Q 003462 128 FN 129 (818)
Q Consensus 128 Fd 129 (818)
=+
T Consensus 96 ~~ 97 (110)
T cd04047 96 DE 97 (110)
T ss_pred HH
Confidence 54
No 143
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=92.40 E-value=0.46 Score=45.36 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=47.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccC-CCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESM-GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~-~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
.+|-||.+.+ |++. .+|+-..- ..++.|||.+.|++.- -...|.|+|||-..-++..++|.+.++|=
T Consensus 21 ~sDPYv~i~l--g~~~----~kT~v~~~~~~nP~WNe~F~f~v~~----~~~~l~~~V~d~d~~~~dd~iG~~~i~l~ 88 (121)
T cd04016 21 RMDPYCRIRV--GHAV----YETPTAYNGAKNPRWNKTIQCTLPE----GVDSIYIEIFDERAFTMDERIAWTHITIP 88 (121)
T ss_pred CCCceEEEEE--CCEE----EEeEEccCCCCCCccCeEEEEEecC----CCcEEEEEEEeCCCCcCCceEEEEEEECc
Confidence 4777999988 4432 24544322 3468899999999742 13569999999776556679999999885
No 144
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=92.27 E-value=0.53 Score=43.76 Aligned_cols=68 Identities=15% Similarity=0.237 Sum_probs=49.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.++-||.+.+ ++ ...+|..+.-+..+.|||...|++.- +.+..|.|+|||.... +...+|.+.++|-+
T Consensus 27 ~~dPyv~v~~--~~----~~~kT~~~~~t~~P~W~e~f~~~v~~---~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~ 94 (121)
T cd08391 27 KSDPYVIVRV--GA----QTFKSKVIKENLNPKWNEVYEAVVDE---VPGQELEIELFDEDPD-KDDFLGRLSIDLGS 94 (121)
T ss_pred CcCCEEEEEE--CC----EeEEccccCCCCCCcccceEEEEeCC---CCCCEEEEEEEecCCC-CCCcEEEEEEEHHH
Confidence 4566888875 33 23456555445668899999888632 3578999999997655 56689999999865
No 145
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=92.20 E-value=0.47 Score=46.02 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=52.9
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEeccccc------------CcCccCceEEEEEeecCCCCcee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYR------------DLTAHSQLALTVWDVSCGKDERL 119 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~------------dLPr~a~L~~ti~~~~~~~~~~~ 119 (818)
.++-||++.+-.+.+. ..-+|+.+.-+..+.|||-+.|++.-. +-.....|.|+|||.....+...
T Consensus 18 ~~dPyv~v~~~~~~~~--~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~ 95 (137)
T cd08675 18 TCDPFARVTLNYSSKT--DTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDF 95 (137)
T ss_pred CCCcEEEEEEecCCcC--CeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcCcCCcE
Confidence 4677888877532111 223555555456789999999997654 34467789999999876556778
Q ss_pred EeEEEEeee
Q 003462 120 VGGTTILLF 128 (818)
Q Consensus 120 vG~~~~~LF 128 (818)
+|.+.++|=
T Consensus 96 IG~~~i~l~ 104 (137)
T cd08675 96 LGEVRIPLQ 104 (137)
T ss_pred EEEEEEehh
Confidence 999999854
No 146
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=92.02 E-value=1 Score=44.88 Aligned_cols=51 Identities=25% Similarity=0.489 Sum_probs=39.0
Q ss_pred eecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 72 MRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 72 ~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
-+|..+.-+..+.|||.+.|++. ++ .+..|.|+|||.. ...+|.+.+++=+
T Consensus 91 ~kT~v~~~tlnP~WnE~F~f~v~--~~-~~~~L~i~V~D~d----d~~IG~v~i~l~~ 141 (153)
T cd08676 91 KVTEVKPQTLNPVWNETFRFEVE--DV-SNDQLHLDIWDHD----DDFLGCVNIPLKD 141 (153)
T ss_pred EecceecCCCCCccccEEEEEec--cC-CCCEEEEEEEecC----CCeEEEEEEEHHH
Confidence 35655555567899999999973 33 4689999999975 5689999999844
No 147
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=91.93 E-value=1.3 Score=41.82 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=47.6
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
.+|-||.+.+ +++.+ -+|....-+.++.|||-..|++.- -...|.|.||+...-++...+|.+.+++-
T Consensus 20 ~~DPYv~v~~--~~~~~---~kT~v~~~t~nP~Wne~f~~~~~~----~~~~l~v~v~d~~~~~~d~~iG~~~~~~~ 87 (121)
T cd04054 20 SSDPYCIVKV--DNEVI---IRTATVWKTLNPFWGEEYTVHLPP----GFHTVSFYVLDEDTLSRDDVIGKVSLTRE 87 (121)
T ss_pred CCCceEEEEE--CCEee---eeeeeEcCCCCCcccceEEEeeCC----CCCEEEEEEEECCCCCCCCEEEEEEEcHH
Confidence 3566887765 45443 245544445678899999998742 23789999999765555678999999864
No 148
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=91.67 E-value=0.64 Score=46.29 Aligned_cols=68 Identities=25% Similarity=0.329 Sum_probs=48.0
Q ss_pred CCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 003462 50 ERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 50 ~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
...+|-||++++ ++... .+|.-+.-+.++.|||...|++. ...+.|.|+|||-..- +...||.+++++
T Consensus 55 ~g~sDPYv~V~l--~~~~~---~rT~v~~~~~nP~WnE~F~~~~~----~~~~~l~~~V~d~d~~-~~~~IG~~~i~l 122 (158)
T cd04015 55 KITSDPYATVDL--AGARV---ARTRVIENSENPVWNESFHIYCA----HYASHVEFTVKDNDVV-GAQLIGRAYIPV 122 (158)
T ss_pred CCCcCeEEEEEE--CCeEe---eEEEEeCCCCCCccceEEEEEcc----CCCCEEEEEEEeCCCc-CCcEEEEEEEEh
Confidence 345788999987 44433 24544443456889999999864 2346899999996543 346899999998
No 149
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=91.62 E-value=1.2 Score=42.47 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=45.8
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeec-------CCCCceeEeEEEE
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVS-------CGKDERLVGGTTI 125 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~-------~~~~~~~vG~~~~ 125 (818)
+|-||+..+-.+++.- ....|.-+.-+.++.|||-.+|++. ..-.|.|++||.. ..++...+|.+.+
T Consensus 15 sDPYV~l~v~~~~~~~-~~~KTk~i~~TlnPvWnE~F~i~l~-----~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i 88 (118)
T cd08686 15 ANLYCTLEVDSFGYFV-KKAKTRVCRDTTEPNWNEEFEIELE-----GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQI 88 (118)
T ss_pred CCCEEEEEEcCccccc-eeeeeeeecCCCCCccceEEEEEeC-----CCCEEEEEEEEcccccccccccCcccEEEEEEE
Confidence 5668888765444321 2335554444556899999999875 2448999999973 1234567888877
Q ss_pred ee
Q 003462 126 LL 127 (818)
Q Consensus 126 ~L 127 (818)
.|
T Consensus 89 ~L 90 (118)
T cd08686 89 QL 90 (118)
T ss_pred EE
Confidence 76
No 150
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.72 E-value=0.52 Score=54.42 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=59.2
Q ss_pred cCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEe
Q 003462 49 EERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTIL 126 (818)
Q Consensus 49 ~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~ 126 (818)
....+|-||.+.+.++++.+.. ..|+.+.-+.++.|||.+.|.|.-.+|-. +.|.++|||...-+....||++.+.
T Consensus 315 ~~~~~d~~Vk~~l~~~~~~~~k-kkT~~~~~~~npv~nesf~F~vp~~~l~~-~~l~l~V~d~d~~~~~~~iG~~~lG 390 (421)
T KOG1028|consen 315 VGGLSDPYVKVTLLDGDKRLSK-KKTSVKKKTLNPVFNETFVFDVPPEQLAE-VSLELTVWDHDTLGSNDLIGRCILG 390 (421)
T ss_pred CCCCCCccEEEEEecCCceeee-eeeecccCCCCCcccccEEEeCCHHHhhe-eEEEEEEEEcccccccceeeEEEec
Confidence 3445678999999999977744 35666665667889999999999999987 8999999998866555578865443
No 151
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=90.61 E-value=1.9 Score=54.01 Aligned_cols=120 Identities=23% Similarity=0.375 Sum_probs=88.9
Q ss_pred eccccceEEEEEEeCCCCeEEEEEEeCCCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeecCccHH
Q 003462 544 FKSALHPLRLTFRTASGGTCKMIFKKGDDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLA 623 (818)
Q Consensus 544 ~~S~~~P~~l~f~~~dg~~~~~i~K~gDDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~s~tl~ 623 (818)
-+..+.=..++|. +| ..+++|. -+|+-|+...+++..+|.-. ....+.+++|+.-+ +.|..|+|+..+..
T Consensus 99 H~~g~~V~~l~f~--~g--~kivYKP-r~l~~d~~f~~~l~~ln~~~----~~~~~~~~~~l~~~-~ygw~EfI~~~~c~ 168 (825)
T cd04792 99 HNGGRVVAILTFS--SG--LKLVYKP-RSLSVDALFQELLEWLNSFL----GALPLRTPKVLDRG-DYGWEEFIEHQPCQ 168 (825)
T ss_pred CCCCceEEEEEEC--CC--CEEEECC-CCchHHHHHHHHHHHHHhcC----CccccccceeeecC-CcceEEeecCCCCC
Confidence 3344555666663 44 3589998 68999999999888877632 22334677888655 58999999853321
Q ss_pred HHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccccCC
Q 003462 624 QILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGR 700 (818)
Q Consensus 624 ~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~ 700 (818)
+ .+..++|-+-++.+..+.|+||..|=|.+|| |..-++-+=||+--+|..
T Consensus 169 ~--------------------------~~e~~~fY~r~G~llal~y~L~~tD~H~ENi-IA~g~~PvlIDlETlf~~ 218 (825)
T cd04792 169 S--------------------------KEEVERYYYRLGGLLALLYLLNATDLHFENI-IASGEYPVLIDLETLFHP 218 (825)
T ss_pred C--------------------------HHHHHHHHHHHHHHHHHHHHcCCcccchhhh-eeeCCCceEEeeHHhcCC
Confidence 1 2346788999999999999999999999999 776778899999766654
No 152
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=90.60 E-value=0.96 Score=44.09 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=50.9
Q ss_pred CCceEEEEEEEeCCccc-------ccceecccccCCCCccc-cccEEecccccCcCccCceEEEEEeecCCCC---ceeE
Q 003462 52 RPELYVECALYIDGAPF-------GLPMRTRLESMGPMYCW-NEPITLSTKYRDLTAHSQLALTVWDVSCGKD---ERLV 120 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l-------~~p~~T~~~~~~~~~~W-newl~fpI~~~dLPr~a~L~~ti~~~~~~~~---~~~v 120 (818)
.+|=||.+.+..+++.+ ...-+|..+.-+-++.| ||-+.|++.. +..|.|+|||....+. ...+
T Consensus 20 ~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-----~~~L~v~V~D~~~~~~~~~~d~l 94 (137)
T cd08691 20 NPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-----TDVLEIEVKDKFAKSRPIIRRFL 94 (137)
T ss_pred CCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-----CCEEEEEEEecCCCCCccCCceE
Confidence 45668999887655542 12345666554557899 9999999853 3479999999654322 4689
Q ss_pred eEEEEeeec
Q 003462 121 GGTTILLFN 129 (818)
Q Consensus 121 G~~~~~LFd 129 (818)
|.+.++|=+
T Consensus 95 G~~~i~l~~ 103 (137)
T cd08691 95 GKLSIPVQR 103 (137)
T ss_pred EEEEEEHHH
Confidence 999998743
No 153
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=90.52 E-value=1.8 Score=42.84 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=57.8
Q ss_pred CceEEEEEEEe-CCcccccceecccccC--CCCccccccEEecccccCcCccCceEEEEEeecCCCCce-eEeEEEEeee
Q 003462 53 PELYVECALYI-DGAPFGLPMRTRLESM--GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDER-LVGGTTILLF 128 (818)
Q Consensus 53 ~~l~V~~~l~~-~~~~l~~p~~T~~~~~--~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~-~vG~~~~~LF 128 (818)
.+=++++.|.+ +|++++.+-.|+...- .+...||..+.+...+.+||.+|.+.|.+-.+...++.. .-+|+-+.+
T Consensus 31 ~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~kH~K~kk~k~S~kcw~fme~- 109 (147)
T PF14186_consen 31 IDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFKHYKPKKKKTSTKCWAFMEL- 109 (147)
T ss_dssp EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEEEEETTTTCEEEEEEEEEEG-
T ss_pred cCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEEeeeccceeeeeeEEEEEEh-
Confidence 44588899996 8888988877766422 234668999999999999999999999999987655444 457776666
Q ss_pred cccccccccceeEEeec
Q 003462 129 NSKMQLKTGKQKLRLWP 145 (818)
Q Consensus 129 d~~~~Lr~G~~~L~lWp 145 (818)
..++.|...+.+|.
T Consensus 110 ---dei~~g~~~lely~ 123 (147)
T PF14186_consen 110 ---DEIKPGPVVLELYK 123 (147)
T ss_dssp ---GG--SEEEEE--EE
T ss_pred ---hhccCCceeeehhc
Confidence 78899999999985
No 154
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=89.89 E-value=2.4 Score=40.25 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=47.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.++-||.+. .+++ ...|+.+.-+..+.|||-..|.+. + .+..|.|+|||.... +...+|.+++++-.
T Consensus 23 ~~dPyv~v~--~~~~----~~kT~v~~~t~nP~Wne~f~f~~~--~--~~~~l~i~V~d~~~~-~d~~lG~~~~~l~~ 89 (126)
T cd04046 23 GADPYVIIK--CEGE----SVRSPVQKDTLSPEFDTQAIFYRK--K--PRSPIKIQVWNSNLL-CDEFLGQATLSADP 89 (126)
T ss_pred CcCccEEEE--ECCE----EEEeCccCCCCCCcccceEEEEec--C--CCCEEEEEEEECCCC-CCCceEEEEEeccc
Confidence 355577764 3454 346666555567899999988754 3 367899999996543 35789999999843
No 155
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=89.52 E-value=1.7 Score=41.77 Aligned_cols=69 Identities=6% Similarity=0.218 Sum_probs=46.5
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecc-ccc----CcCc-cCceEEEEEeecCCCCceeEeEEEE
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLST-KYR----DLTA-HSQLALTVWDVSCGKDERLVGGTTI 125 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI-~~~----dLPr-~a~L~~ti~~~~~~~~~~~vG~~~~ 125 (818)
.++-||.+.+. +. ..+|..+.-+.++.|||.++|++ .+. ++.. ...|.|+|||....++...+|.+.+
T Consensus 21 ~~dpyv~v~~~--~~----~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i 94 (135)
T cd04017 21 LSDPFARVSFL--NQ----SQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVA 94 (135)
T ss_pred CCCCEEEEEEC--Ce----eeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEe
Confidence 45668888763 32 33555554455688999999984 332 2322 3569999999876556679999987
Q ss_pred e
Q 003462 126 L 126 (818)
Q Consensus 126 ~ 126 (818)
.
T Consensus 95 ~ 95 (135)
T cd04017 95 K 95 (135)
T ss_pred e
Confidence 3
No 156
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=88.57 E-value=3.2 Score=39.44 Aligned_cols=66 Identities=20% Similarity=0.365 Sum_probs=44.1
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCC-----------CCceeEe
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCG-----------KDERLVG 121 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~-----------~~~~~vG 121 (818)
+|-||.+.+ +++ ..+|..+.-+..+.|||...|++.- | ...|.|.|||.... ++...+|
T Consensus 22 ~DPyv~v~~--~~~----~~kT~~v~~t~~P~Wne~f~f~~~~---~-~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG 91 (127)
T cd04027 22 SDPYVTVQV--GKT----KKRTKTIPQNLNPVWNEKFHFECHN---S-SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLG 91 (127)
T ss_pred cCcEEEEEE--CCE----eeecceecCCCCCccceEEEEEecC---C-CCEEEEEEEECCCCcccccceeccccCCCcce
Confidence 455777765 332 2355554434568899999998642 2 45799999996531 2456899
Q ss_pred EEEEeee
Q 003462 122 GTTILLF 128 (818)
Q Consensus 122 ~~~~~LF 128 (818)
.+.+++=
T Consensus 92 ~~~i~l~ 98 (127)
T cd04027 92 QTIIEVR 98 (127)
T ss_pred EEEEEhH
Confidence 9999873
No 157
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=88.29 E-value=4.4 Score=37.33 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=44.1
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
.++-||.+.+ +++.. -+|+-+.- .++.|||...|++.-.+++ ...|.+.+|+-....+...+|.+.+....
T Consensus 17 ~~dpyv~v~~--~~~~~---~kT~~~~~-~~P~Wne~f~f~v~~~~~~-~~~l~i~v~d~~~~~~~~~~g~v~l~~~~ 87 (117)
T cd08383 17 TRDPYCTVSL--DQVEV---ARTKTVEK-LNPFWGEEFVFDDPPPDVT-FFTLSFYNKDKRSKDRDIVIGKVALSKLD 87 (117)
T ss_pred CCCceEEEEE--CCEEe---EecceEEC-CCCcccceEEEecCCcccc-EEEEEEEEEecccCCCeeEEEEEEecCcC
Confidence 4666887776 44332 23443333 5688999999998654442 35677888886543344567776665543
No 158
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=87.83 E-value=1.9 Score=40.87 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=47.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
.+|-||.+.+ +++.. -+|.-+.-+.++.|||-.+|++.-. ...|.|+||+...-.+...+|.+.++|=
T Consensus 21 ~sDpYv~v~l--~~~~~---~kT~v~~kt~~P~WnE~F~f~v~~~----~~~l~~~v~d~~~~~~~~~iG~~~i~l~ 88 (121)
T cd08401 21 MRDCYCTVNL--DQEEV---FRTKTVEKSLCPFFGEDFYFEIPRT----FRHLSFYIYDRDVLRRDSVIGKVAIKKE 88 (121)
T ss_pred CcCcEEEEEE--CCccE---EEeeEEECCCCCccCCeEEEEcCCC----CCEEEEEEEECCCCCCCceEEEEEEEHH
Confidence 4566888877 44432 2333332345688999999997621 3589999999876556678999999873
No 159
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=85.96 E-value=3.9 Score=40.46 Aligned_cols=67 Identities=24% Similarity=0.386 Sum_probs=48.4
Q ss_pred ceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCC----CceeEeEEEEeeec
Q 003462 54 ELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGK----DERLVGGTTILLFN 129 (818)
Q Consensus 54 ~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~----~~~~vG~~~~~LFd 129 (818)
+.|++++| ||... .+|+-+.-+..+.|+|-..|+ ++|.-+.|+|+||...+.. +...||.+.|++-+
T Consensus 28 ~~Y~~i~L--d~~~v---aRT~v~~~~~nP~W~E~F~f~----~~~~~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~ 98 (146)
T cd04013 28 RYYCELCL--DKTLY---ARTTSKLKTDTLFWGEHFEFS----NLPPVSVITVNLYRESDKKKKKDKSQLIGTVNIPVTD 98 (146)
T ss_pred CceEEEEE--CCEEE---EEEEEEcCCCCCcceeeEEec----CCCcccEEEEEEEEccCccccccCCcEEEEEEEEHHH
Confidence 45666554 45433 255555545578899999996 8888888999999765432 45799999999875
No 160
>PLN03008 Phospholipase D delta
Probab=83.77 E-value=2.3 Score=52.57 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=56.1
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc
Q 003462 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS 130 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~ 130 (818)
..+|.||++.| +++.+. +|.-+.-..++.|||.++|++.- ..+.|.|+|||-..-+ ..+||.+.++|=
T Consensus 75 ~tSDPYV~I~L--g~~rv~---RTrVi~n~~NPvWNE~F~f~vah----~~s~L~f~VkD~D~~g-aD~IG~a~IPL~-- 142 (868)
T PLN03008 75 ITSDPYVTVVV--PQATLA---RTRVLKNSQEPLWDEKFNISIAH----PFAYLEFQVKDDDVFG-AQIIGTAKIPVR-- 142 (868)
T ss_pred CCCCceEEEEE--CCccee---eEEeCCCCCCCCcceeEEEEecC----CCceEEEEEEcCCccC-CceeEEEEEEHH--
Confidence 46799999999 543332 56554444568899999999764 3578999999965443 468999999974
Q ss_pred cccccccceeEEeec
Q 003462 131 KMQLKTGKQKLRLWP 145 (818)
Q Consensus 131 ~~~Lr~G~~~L~lWp 145 (818)
.|..|... ..|.
T Consensus 143 --~L~~Ge~v-d~Wl 154 (868)
T PLN03008 143 --DIASGERI-SGWF 154 (868)
T ss_pred --HcCCCCce-EEEE
Confidence 35556443 4564
No 161
>TIGR03724 arch_bud32 Kae1-associated kinase Bud32. Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.
Probab=83.05 E-value=5.6 Score=40.05 Aligned_cols=73 Identities=23% Similarity=0.418 Sum_probs=46.1
Q ss_pred cccEEEEeeCC--CCeeeeecCccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--CC
Q 003462 600 TPYNVLATGQD--EGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GD 675 (818)
Q Consensus 600 ~~Y~Vlp~~~~--~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGI--GD 675 (818)
..+.++....+ .=+.|+++..++.+....... ..+..+|.....-+-.|+ ||
T Consensus 60 ~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~~------------------------~~~~~i~~~l~~lH~~gi~H~D 115 (199)
T TIGR03724 60 NTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGND------------------------ELLREIGRLVGKLHKAGIVHGD 115 (199)
T ss_pred CCCEEEEEECCCCEEEEEEECCccHHHHHhhcHH------------------------HHHHHHHHHHHHHHHCCeecCC
Confidence 34455555554 334788887787776543211 222333333333344565 89
Q ss_pred CCCCceeEcCCCCEEEEeeccc
Q 003462 676 RHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 676 RH~dNIli~~~G~lfHIDFG~i 697 (818)
-|++|||++ +|++.-||||..
T Consensus 116 l~~~Nil~~-~~~~~liDfg~a 136 (199)
T TIGR03724 116 LTTSNIIVR-DDKLYLIDFGLG 136 (199)
T ss_pred CCcceEEEE-CCcEEEEECCCC
Confidence 999999999 899999999964
No 162
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=82.79 E-value=1.1 Score=47.75 Aligned_cols=112 Identities=23% Similarity=0.345 Sum_probs=69.0
Q ss_pred hcCCCccccccEEEEeeC-CCCeee-eecC-cc--HHHHHhhhhhHHHHHHHhC-CCCCCCCcccHHHHHHHHHHHHHHH
Q 003462 592 LENLDLHLTPYNVLATGQ-DEGLLE-FIPS-RS--LAQILSEHRSIISYLQKFH-PDEHGPFGITATCLETFIKSCAGYS 665 (818)
Q Consensus 592 ~~~ldL~l~~Y~Vlp~~~-~~GlIE-~V~s-~t--l~~I~~~~~~l~~~l~~~~-~~~~~~~~i~~~~~~~F~~S~Agys 665 (818)
++.+...+.|+.|+--|+ ..|++| ||.. .. +-++......-..|+.--. .++.+.. + ..+...-..+.-++
T Consensus 63 s~~lGw~~VPpTvlrDGP~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~-v--~l~h~d~~~l~ria 139 (253)
T TIGR03843 63 SEALGWGLVPPTVLRDGPFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEP-V--VLVHADHPQLRRMA 139 (253)
T ss_pred HHHhCCCcCCCeeeecCCCCCceEEEeccCCCccchhhcccccccCCccccccccccccCcc-e--eecccccHHHhhhh
Confidence 445678899999997655 468887 4553 22 1111111100011111000 0110100 0 01233455677889
Q ss_pred HHHHHhccCCCCCCceeEcCCCCEEEEeeccccCCCCCCCC
Q 003462 666 VITYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFP 706 (818)
Q Consensus 666 v~tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~~p~pf~ 706 (818)
|+=+++.=.|||.+|||..++|+++-||=|++|..++|-..
T Consensus 140 VfDi~inNaDRk~GhiL~~~dg~l~~IDHGl~f~~~~klrt 180 (253)
T TIGR03843 140 VFDALVNNADRKGGHVLPGPDGRVWGVDHGVCFHVEPKLRT 180 (253)
T ss_pred hheeeeecCCCCCCcEeEcCCCcEEEecCceecCCCCcccc
Confidence 99999999999999999999999999999999998876433
No 163
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=82.56 E-value=2.7 Score=49.87 Aligned_cols=86 Identities=21% Similarity=0.265 Sum_probs=52.4
Q ss_pred CccccccEEEE--eeCCCCeeeeecCccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc
Q 003462 596 DLHLTPYNVLA--TGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI 673 (818)
Q Consensus 596 dL~l~~Y~Vlp--~~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGI 673 (818)
+-.+...+|.. ++++.=..|||+...+.++..-. + .+-+ .+..-+++++++--. +...=+==
T Consensus 225 ~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~--------~-~g~d------~k~ia~~~~~~f~~q-~~~dgffH 288 (517)
T COG0661 225 DPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALK--------S-AGID------RKELAELLVRAFLRQ-LLRDGFFH 288 (517)
T ss_pred CCCeEeceeehhccCCcEEEEEeeCCEecccHHHHH--------h-cCCC------HHHHHHHHHHHHHHH-HHhcCccc
Confidence 45667777774 68888789999987777764211 0 0000 011222333322111 11111223
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|=|++||+++.+|+++-+|||.+
T Consensus 289 aDpHpGNi~v~~~g~i~~lDfGi~ 312 (517)
T COG0661 289 ADPHPGNILVRSDGRIVLLDFGIV 312 (517)
T ss_pred cCCCccceEEecCCcEEEEcCcce
Confidence 799999999999999999999976
No 164
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=81.79 E-value=4.4 Score=39.19 Aligned_cols=62 Identities=19% Similarity=0.300 Sum_probs=43.4
Q ss_pred EEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeec
Q 003462 56 YVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFN 129 (818)
Q Consensus 56 ~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd 129 (818)
||.+++ |++ -..|....- +++.|||-..|.+. + +.+ .|.+.|||-.. .....+|.+.++|=+
T Consensus 23 YV~Ik~--g~~----k~kT~v~~~-~nP~WnE~F~F~~~--~-~~~-~L~v~V~dkd~-~~DD~lG~v~i~L~~ 84 (127)
T cd08394 23 YVTLKV--QNV----KSTTIAVRG-SQPCWEQDFMFEIN--R-LDL-GLVIELWNKGL-IWDTLVGTVWIPLST 84 (127)
T ss_pred eEEEEE--CCE----EeEeeECCC-CCCceeeEEEEEEc--C-CCC-EEEEEEEeCCC-cCCCceEEEEEEhHH
Confidence 888877 553 335555443 47899999999973 3 333 39999999542 355689999999854
No 165
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=79.44 E-value=4.1 Score=41.06 Aligned_cols=66 Identities=26% Similarity=0.372 Sum_probs=45.2
Q ss_pred CceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 53 PELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 53 ~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
+|=||... .|++.+ +|.-..-..++.|||-++|+|+=.. .-|.++|||...-...-.+|-++|+|=
T Consensus 27 SDPyVVl~--lg~q~l----kT~~v~~n~NPeWNe~ltf~v~d~~----~~lkv~VyD~D~fs~dD~mG~A~I~l~ 92 (168)
T KOG1030|consen 27 SDPYVVLE--LGNQKL----KTRVVYKNLNPEWNEELTFTVKDPN----TPLKVTVYDKDTFSSDDFMGEATIPLK 92 (168)
T ss_pred CCCeEEEE--ECCeee----eeeeecCCCCCcccceEEEEecCCC----ceEEEEEEeCCCCCcccccceeeeccH
Confidence 33365554 355444 4443333456889999999987554 457899999876666678999999874
No 166
>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Probab=73.97 E-value=30 Score=37.56 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=22.4
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||-.++||||+.+|++.=+|||..
T Consensus 120 ~Dlkp~NIll~~~~~~kl~Dfg~~ 143 (321)
T cd05603 120 RDLKPENILLDSQGHVVLTDFGLC 143 (321)
T ss_pred ccCCHHHeEECCCCCEEEccCCCC
Confidence 788999999999999999999965
No 167
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=72.85 E-value=11 Score=47.91 Aligned_cols=88 Identities=23% Similarity=0.346 Sum_probs=62.5
Q ss_pred eEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccC
Q 003462 18 VKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRD 97 (818)
Q Consensus 18 ~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~d 97 (818)
|.|+|.+.+|.+. +.+-.....|=||+++ +++-..= .|+-+.=..++.|||.+-.||.
T Consensus 438 v~vkI~sa~~lk~--------------~d~~i~~~vDpyit~~-~~~r~~g----kT~v~~nt~nPvwNEt~Yi~ln--- 495 (1227)
T COG5038 438 VEVKIKSAEGLKK--------------SDSTINGTVDPYITVT-FSDRVIG----KTRVKKNTLNPVWNETFYILLN--- 495 (1227)
T ss_pred EEEEEeeccCccc--------------ccccccCCCCceEEEE-eccccCC----ccceeeccCCccccceEEEEec---
Confidence 6799999999644 2223344566688888 5432111 4444443445789999999988
Q ss_pred cCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 98 LTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 98 LPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
..+..|.+.+||-........+|.+-+.|=
T Consensus 496 -s~~d~L~LslyD~n~~~sd~vvG~~~l~L~ 525 (1227)
T COG5038 496 -SFTDPLNLSLYDFNSFKSDKVVGSTQLDLA 525 (1227)
T ss_pred -ccCCceeEEEEeccccCCcceeeeEEechH
Confidence 788899999999776667788999977763
No 168
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=72.75 E-value=69 Score=34.41 Aligned_cols=46 Identities=22% Similarity=0.120 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
...++..++.-.-.-+=.|| ||-.++|||++++|.+.=+|||..-+
T Consensus 126 ~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~ 173 (303)
T cd05088 126 LLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRG 173 (303)
T ss_pred HHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEEeCccccCcc
Confidence 34444444432222234455 78889999999999999999997754
No 169
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.23 E-value=24 Score=40.96 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=58.0
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeeccc
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSK 131 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~ 131 (818)
.+|=||.+.+.-+- -.-.+|.-+--...+.|||.+.|+|.+.+|.. ..|.|+||+...=.....+|-+.++|.+-+
T Consensus 187 ~sdpyVK~~llPdk---~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~-~~L~l~V~~~drfsr~~~iGev~~~l~~~~ 262 (421)
T KOG1028|consen 187 TSDPYVKVYLLPDK---KGKFKTRVHRKTLNPVFNETFRFEVPYEELSN-RVLHLSVYDFDRFSRHDFIGEVILPLGEVD 262 (421)
T ss_pred CCCCeeEEEEcCCC---CCcceeeeeecCcCCccccceEeecCHHHhcc-CEEEEEEEecCCcccccEEEEEEecCcccc
Confidence 45668988877444 12345665555566889999999999999975 589999999876456678999999977644
Q ss_pred c
Q 003462 132 M 132 (818)
Q Consensus 132 ~ 132 (818)
-
T Consensus 263 ~ 263 (421)
T KOG1028|consen 263 L 263 (421)
T ss_pred c
Confidence 3
No 170
>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal
Probab=72.07 E-value=31 Score=37.64 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.7
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=+++|||++.+|.+.-+|||..-
T Consensus 120 ~dlkp~NIli~~~~~~kL~DfG~~~ 144 (320)
T cd05590 120 RDLKLDNVLLDHEGHCKLADFGMCK 144 (320)
T ss_pred CCCCHHHeEECCCCcEEEeeCCCCe
Confidence 7889999999999999999999643
No 171
>PRK14879 serine/threonine protein kinase; Provisional
Probab=70.38 E-value=34 Score=34.60 Aligned_cols=77 Identities=18% Similarity=0.314 Sum_probs=45.8
Q ss_pred ccccEEEEeeCCCC--eeeeecCccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--C
Q 003462 599 LTPYNVLATGQDEG--LLEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--G 674 (818)
Q Consensus 599 l~~Y~Vlp~~~~~G--lIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGI--G 674 (818)
+.+..++....+.+ +.|+++..++.+++..... .+......++.....-+-.|+ |
T Consensus 61 i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~~~---------------------~~~~i~~~i~~~l~~lH~~~i~H~ 119 (211)
T PRK14879 61 VNVPAVYFVDPENFIIVMEYIEGEPLKDLINSNGM---------------------EELELSREIGRLVGKLHSAGIIHG 119 (211)
T ss_pred CCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhccH---------------------HHHHHHHHHHHHHHHHHhCCcccC
Confidence 34444444443333 4678887788776642210 122333333333222333444 8
Q ss_pred CCCCCceeEcCCCCEEEEeeccc
Q 003462 675 DRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 675 DRH~dNIli~~~G~lfHIDFG~i 697 (818)
|-|++|||++ +|.+.-||||..
T Consensus 120 Dl~p~Nil~~-~~~~~liDf~~a 141 (211)
T PRK14879 120 DLTTSNMILS-GGKIYLIDFGLA 141 (211)
T ss_pred CCCcccEEEE-CCCEEEEECCcc
Confidence 9999999999 899999999964
No 172
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=70.10 E-value=1e+02 Score=31.75 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=22.4
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=+++||+++.+|++.=+|||..
T Consensus 128 ~dl~p~nilv~~~~~~~l~dfg~~ 151 (263)
T cd06625 128 RDIKGANILRDSAGNVKLGDFGAS 151 (263)
T ss_pred CCCCHHHEEEcCCCCEEEeecccc
Confidence 899999999999999999999965
No 173
>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane
Probab=69.45 E-value=35 Score=35.19 Aligned_cols=98 Identities=20% Similarity=0.341 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhcCCCccccccEEEEeeCC-CC-------eeeeec-CccHHHHHhhhhhHHHHHHHhCCCCCCCCc
Q 003462 578 LVVQMVSLMDRLLKLENLDLHLTPYNVLATGQD-EG-------LLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFG 648 (818)
Q Consensus 578 lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~-~G-------lIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~ 648 (818)
++.+=++.+..+.+ .| +.+..+++.+.. .| +.|.++ +.+|.+++..... .+
T Consensus 57 ra~~E~~~~~~L~~-~G----i~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~---------~~------ 116 (206)
T PF06293_consen 57 RAKREWRNLQRLRE-AG----IPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQ---------LD------ 116 (206)
T ss_pred HHHHHHHHHHHHHH-cC----CCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcc---------cc------
Confidence 45555555555443 33 556666666554 11 457777 6778777643211 11
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCC---CEEEEeeccc
Q 003462 649 ITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDG---RLFHVDFGYI 697 (818)
Q Consensus 649 i~~~~~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G---~lfHIDFG~i 697 (818)
....+.+.+.+|.+..--+--|| ||=|+.|||++.++ +++=|||+-.
T Consensus 117 --~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~ 168 (206)
T PF06293_consen 117 --PSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRM 168 (206)
T ss_pred --hhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhc
Confidence 23467888888888888888887 89999999999877 9999999754
No 174
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=69.36 E-value=7.9 Score=35.25 Aligned_cols=72 Identities=15% Similarity=0.275 Sum_probs=52.9
Q ss_pred CCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 51 RRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
+++.+||..-+- =.||. +..|+.+-..+.+.+.|...|.|+.-+|+. ..|.|.||. .-+ +...+||.+++|=
T Consensus 19 e~~~i~ikg~~t-l~kpv--~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~-V~L~fsv~~-~~~-RKe~iG~~sL~l~ 90 (103)
T cd08684 19 ENPTIYIKGILT-LPKPV--HFKSSAKEGSNDIEFMETFVFAIKLQNLQT-VRLVFKIQT-QTP-RKRTIGECSLSLR 90 (103)
T ss_pred cCCeeEEEEEEe-cCCCc--cccchhhcCCCChhHHHHHHHHHHHhhccc-eEEEEEeec-cCC-ccceeeEEEeecc
Confidence 567788876443 22232 445777777778899999999999999985 678999998 322 3457999999874
No 175
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=68.63 E-value=7.2 Score=46.80 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=27.9
Q ss_pred HHHHHHhcc----CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 665 SVITYILGI----GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 665 sv~tYiLGI----GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
|.+-||=-+ .|=-+||||||.+||+=-.|||.+-|
T Consensus 740 cAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTG 778 (1034)
T KOG0608|consen 740 CAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTG 778 (1034)
T ss_pred HHHHHHHhccceecccCccceEEccCCceeeeecccccc
Confidence 444444444 47779999999999999999999987
No 176
>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt
Probab=67.52 E-value=53 Score=35.76 Aligned_cols=28 Identities=36% Similarity=0.598 Sum_probs=24.3
Q ss_pred Hhcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 670 ILGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 670 iLGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
=.|| +|-.++|||++++|.+.=+|||..
T Consensus 114 ~~giiHrDlkp~Nili~~~~~~kl~DfG~a 143 (325)
T cd05602 114 SLNIVYRDLKPENILLDSQGHIVLTDFGLC 143 (325)
T ss_pred HCCeEecCCCHHHeEECCCCCEEEccCCCC
Confidence 3455 799999999999999999999975
No 177
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=67.31 E-value=89 Score=33.00 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.8
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=.++||+++.+|.+.=+|||..-
T Consensus 156 ~dlkp~Nil~~~~~~~kL~Dfg~~~ 180 (293)
T cd05053 156 RDLAARNVLVTEDHVMKIADFGLAR 180 (293)
T ss_pred cccceeeEEEcCCCeEEeCcccccc
Confidence 5667899999999999999999653
No 178
>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul
Probab=67.05 E-value=42 Score=37.20 Aligned_cols=28 Identities=43% Similarity=0.599 Sum_probs=24.3
Q ss_pred hcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 671 LGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 671 LGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
.|| +|=+++||||+.+|++.-+|||..-
T Consensus 120 ~givHrDLkp~NIli~~~~~vkL~DfG~~~ 149 (360)
T cd05627 120 LGFIHRDIKPDNLLLDAKGHVKLSDFGLCT 149 (360)
T ss_pred CCeEccCCCHHHEEECCCCCEEEeeccCCc
Confidence 444 7889999999999999999999754
No 179
>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,
Probab=66.93 E-value=59 Score=35.39 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
...++..++.---.-+=.|| ||=+++|||++.+|++.=+|||..-
T Consensus 98 ~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~ 144 (325)
T cd05604 98 ARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCK 144 (325)
T ss_pred HHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcc
Confidence 34444444432222233454 6888999999999999999999753
No 180
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=64.41 E-value=20 Score=33.76 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=36.5
Q ss_pred CCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeeccccccc
Q 003462 81 PMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKMQLK 135 (818)
Q Consensus 81 ~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~~Lr 135 (818)
.+.+|||-..||| | ..-.+.++|||-.+ ....|||-.=+.|.|--..+|
T Consensus 43 rnd~WnE~F~i~V---d--k~nEiel~VyDk~~-~~~~Pi~llW~~~sdi~Ee~R 91 (109)
T cd08689 43 RNDRWNEDFEIPV---E--KNNEEEVIVYDKGG-DQPVPVGLLWLRLSDIAEEIR 91 (109)
T ss_pred CCCcccceEEEEe---c--CCcEEEEEEEeCCC-CeecceeeehhhHHHHHHHHH
Confidence 4567999988887 3 47899999999744 467899988777777443443
No 181
>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase. Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr
Probab=63.56 E-value=73 Score=34.64 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=22.5
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=.++||||+.+|.+--+|||..-
T Consensus 120 ~dikp~NIll~~~~~~kl~Dfg~~~ 144 (323)
T cd05575 120 RDLKPENILLDSQGHVVLTDFGLCK 144 (323)
T ss_pred CCCCHHHeEECCCCcEEEeccCCCc
Confidence 6888999999999999999999653
No 182
>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=62.88 E-value=19 Score=36.99 Aligned_cols=60 Identities=23% Similarity=0.424 Sum_probs=42.3
Q ss_pred hHHHHHHHhCCCCCCCCcccHHHHHHHHHHH---HHHHHHHHHhccCCCCCCceeEcCCCCEEEEeeccc
Q 003462 631 SIISYLQKFHPDEHGPFGITATCLETFIKSC---AGYSVITYILGIGDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 631 ~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~---Agysv~tYiLGIGDRH~dNIli~~~G~lfHIDFG~i 697 (818)
.+..||.+.|++- .++..+.|+-.+ -|+|-...+|. .|-.+.|++|+++|.+=-.|||..
T Consensus 86 dlkkyfdslng~~------d~~~~rsfmlqllrgl~fchshnvlh-rdlkpqnllin~ngelkladfgla 148 (292)
T KOG0662|consen 86 DLKKYFDSLNGDL------DPEIVRSFMLQLLRGLGFCHSHNVLH-RDLKPQNLLINRNGELKLADFGLA 148 (292)
T ss_pred HHHHHHHhcCCcC------CHHHHHHHHHHHHhhhhhhhhhhhhh-ccCCcceEEeccCCcEEecccchh
Confidence 4566666666542 245566666655 34565556664 588899999999999999999954
No 183
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=62.41 E-value=4.5 Score=48.28 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=22.5
Q ss_pred CCCCCCceeEcCCC----CEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDG----RLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G----~lfHIDFG~i 697 (818)
+|=|++||+++.+| ++.-+|||..
T Consensus 284 aDpHPGNIlv~~~g~~~~~i~llDFGiv 311 (537)
T PRK04750 284 ADMHPGNIFVSYDPPENPRYIALDFGIV 311 (537)
T ss_pred CCCChHHeEEecCCCCCCeEEEEecceE
Confidence 89999999999888 9999999976
No 184
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=61.87 E-value=5.2 Score=42.63 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.5
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=|++|||++++| +.=||||..
T Consensus 159 ~Dikp~Nili~~~g-i~liDfg~~ 181 (232)
T PRK10359 159 GDPHKGNFIVSKNG-LRIIDLSGK 181 (232)
T ss_pred CCCChHHEEEeCCC-EEEEECCCc
Confidence 89999999999999 999999866
No 185
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=61.66 E-value=9.1 Score=43.76 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=50.4
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEee
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILL 127 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~L 127 (818)
-||=||.++|.-+.+-.+... |.-.--.-++.|||..+|.++=+| ++-||.+.|||-......-..|..++.+
T Consensus 200 lSDPYvk~kliPD~~~~sKqK-TkTik~~LNP~wNEtftf~Lkp~D--kdrRlsiEvWDWDrTsRNDFMGslSFgi 272 (683)
T KOG0696|consen 200 LSDPYVKLKLIPDPKNESKQK-TKTIKATLNPVWNETFTFKLKPSD--KDRRLSIEVWDWDRTSRNDFMGSLSFGI 272 (683)
T ss_pred CCCcceeEEeccCCcchhhhh-hhhhhhhcCccccceeEEeccccc--ccceeEEEEecccccccccccceecccH
Confidence 367799999987665554431 221112335789999999988877 4668999999987665555677766555
No 186
>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C. Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory
Probab=60.66 E-value=95 Score=33.75 Aligned_cols=27 Identities=41% Similarity=0.684 Sum_probs=23.8
Q ss_pred hcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 671 LGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 671 LGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
.|| ||=+++|||++.+|.+--+|||..
T Consensus 120 ~~ivH~dlkp~Nill~~~~~~kL~Dfg~~ 148 (324)
T cd05587 120 KGIIYRDLKLDNVMLDAEGHIKIADFGMC 148 (324)
T ss_pred CCeEecCCCHHHeEEcCCCCEEEeecCcc
Confidence 454 788999999999999999999964
No 187
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=60.54 E-value=71 Score=35.79 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
...++..++.---..+-.|| +|=.++||||+.+|++.=+|||..
T Consensus 103 ~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~ 148 (381)
T cd05626 103 ARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLC 148 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCC
Confidence 44455554433333344555 788999999999999999999964
No 188
>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1. Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus
Probab=60.45 E-value=68 Score=35.62 Aligned_cols=27 Identities=44% Similarity=0.647 Sum_probs=23.7
Q ss_pred hcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 671 LGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 671 LGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
.|| +|=.++||||+.+|++.=+|||..
T Consensus 120 ~givHrDlKp~NILi~~~~~vkL~DFGla 148 (363)
T cd05628 120 LGFIHRDIKPDNLLLDSKGHVKLSDFGLC 148 (363)
T ss_pred CCeEecCCCHHHeEECCCCCEEEeeccCc
Confidence 455 788999999999999999999975
No 189
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=60.04 E-value=7 Score=37.95 Aligned_cols=27 Identities=37% Similarity=0.503 Sum_probs=23.1
Q ss_pred hccCCCCCCceeEcCCCCEEEEeecccc
Q 003462 671 LGIGDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 671 LGIGDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+-=||=|++|||++ +|++.-||||..-
T Consensus 109 ~~HgD~~~~Nil~~-~~~~~liDf~~a~ 135 (170)
T cd05151 109 PCHNDLLPGNFLLD-DGRLWLIDWEYAG 135 (170)
T ss_pred eecCCCCcCcEEEE-CCeEEEEeccccc
Confidence 34499999999999 7889999999764
No 190
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=59.98 E-value=6.5 Score=45.66 Aligned_cols=24 Identities=33% Similarity=0.764 Sum_probs=22.7
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=|++|||++++|++.=||||..
T Consensus 281 ~D~hPgNilv~~~g~i~liDfG~~ 304 (437)
T TIGR01982 281 ADLHPGNIFVLKDGKIIALDFGIV 304 (437)
T ss_pred CCCCcccEEECCCCcEEEEeCCCe
Confidence 699999999999999999999976
No 191
>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and
Probab=59.61 E-value=84 Score=34.15 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=22.7
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|-.++|||++++|++--+|||..-
T Consensus 125 rDlkp~Nill~~~~~~kL~DfG~~~ 149 (323)
T cd05616 125 RDLKLDNVMLDSEGHIKIADFGMCK 149 (323)
T ss_pred cCCCHHHeEECCCCcEEEccCCCce
Confidence 7888999999999999999999764
No 192
>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1. Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto
Probab=59.27 E-value=67 Score=33.38 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.9
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=+++||+++.+|++..+|||...
T Consensus 126 ~dl~~~ni~i~~~~~~~l~df~~~~ 150 (280)
T cd05581 126 RDLKPENILLDKDMHIKITDFGTAK 150 (280)
T ss_pred cCCCHHHeEECCCCCEEecCCcccc
Confidence 7999999999999999999999654
No 193
>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways
Probab=59.25 E-value=1e+02 Score=33.70 Aligned_cols=25 Identities=40% Similarity=0.618 Sum_probs=22.7
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|=.++|||++.+|++.-+|||...
T Consensus 120 rDlkp~Nili~~~~~~kl~Dfg~~~ 144 (327)
T cd05617 120 RDLKLDNVLLDADGHIKLTDYGMCK 144 (327)
T ss_pred cCCCHHHEEEeCCCCEEEeccccce
Confidence 7888999999999999999999764
No 194
>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro
Probab=59.05 E-value=6.6 Score=39.76 Aligned_cols=27 Identities=30% Similarity=0.555 Sum_probs=23.6
Q ss_pred hcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 671 LGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 671 LGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
-|| +|=|++|||++ +|++.=||||..-
T Consensus 137 ~givHrDlkP~NIll~-~~~~~liDFG~a~ 165 (190)
T cd05145 137 AGLVHGDLSEYNILYH-DGKPYIIDVSQAV 165 (190)
T ss_pred CCEecCCCChhhEEEE-CCCEEEEEcccce
Confidence 455 89999999999 8999999999763
No 195
>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of
Probab=58.17 E-value=94 Score=33.81 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=23.8
Q ss_pred hcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 671 LGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 671 LGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
.|| +|=.++||||+.+|++.=+|||..
T Consensus 115 ~~ivHrDlkp~Nili~~~~~~kl~Dfg~a 143 (330)
T cd05586 115 YDIVYRDLKPENILLDATGHIALCDFGLS 143 (330)
T ss_pred CCeEeccCCHHHeEECCCCCEEEecCCcC
Confidence 455 788999999999999999999964
No 196
>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]
Probab=57.89 E-value=20 Score=39.99 Aligned_cols=77 Identities=23% Similarity=0.391 Sum_probs=48.3
Q ss_pred hHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccccCCCCCCCCCC
Q 003462 631 SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPPP 708 (818)
Q Consensus 631 ~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~ilg~~p~pf~~P 708 (818)
.+..|+....+.. .|+.....+.|++.+-----.++-=|| .|-+++||||+++|.+=-+|||-.- -+.+|
T Consensus 102 DL~~ymd~~~~~~---~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAr-----a~~ip 173 (323)
T KOG0594|consen 102 DLKKYMDSLPKKP---QGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLAR-----AFSIP 173 (323)
T ss_pred cHHHHHHhccccc---cCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHH-----HhcCC
Confidence 4566666654321 233344567777776443333444444 5779999999999999999999653 23344
Q ss_pred cc-ccHHH
Q 003462 709 MK-LCKEM 715 (818)
Q Consensus 709 Fr-LT~~m 715 (818)
.+ +|+|.
T Consensus 174 ~~~yt~ev 181 (323)
T KOG0594|consen 174 MRTYTPEV 181 (323)
T ss_pred cccccccE
Confidence 44 55554
No 197
>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c
Probab=57.22 E-value=6.6 Score=40.08 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=24.3
Q ss_pred hcc--CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 671 LGI--GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 671 LGI--GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
.|| ||=|++|||++ +|++.=||||..-.
T Consensus 137 ~giiHrDlkP~NIli~-~~~v~LiDFG~a~~ 166 (190)
T cd05147 137 CRLVHADLSEYNLLYH-DGKLYIIDVSQSVE 166 (190)
T ss_pred CCcccCCCCHHHEEEE-CCcEEEEEcccccc
Confidence 477 89999999998 58999999997753
No 198
>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the
Probab=57.12 E-value=63 Score=35.29 Aligned_cols=25 Identities=36% Similarity=0.558 Sum_probs=22.7
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=.++||||+.+|++.-+|||..-
T Consensus 125 ~Dlkp~NIll~~~~~~kL~Dfg~~~ 149 (350)
T cd05573 125 RDIKPDNILIDADGHIKLADFGLCK 149 (350)
T ss_pred cCCCHHHeEECCCCCEEeecCCCCc
Confidence 6888999999999999999999764
No 199
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=56.68 E-value=78 Score=35.22 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
...++..++.---..+-.|| ||-.++|||++.+|++.-+|||..
T Consensus 103 ~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a 148 (376)
T cd05598 103 ARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC 148 (376)
T ss_pred HHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCC
Confidence 34444444332222233455 788999999999999999999975
No 200
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=54.94 E-value=41 Score=40.42 Aligned_cols=115 Identities=19% Similarity=0.298 Sum_probs=71.5
Q ss_pred EEEeC-CCcchhHHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCCeeeeecCccHHHHHhhhhhHHHHHHHhCCCCC
Q 003462 566 IFKKG-DDIRQDQLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEGLLEFIPSRSLAQILSEHRSIISYLQKFHPDEH 644 (818)
Q Consensus 566 i~K~g-DDLRqD~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~GlIE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~ 644 (818)
|+|+. +=.||-+--+-++..||+ ...++-.-.++-|.+.=.-...-| +-|++ ...|++|++.+...
T Consensus 218 IiKN~k~f~~Q~~~Ei~iL~~ln~-~d~~~~~n~Vrm~d~F~fr~Hlci--------VfELL--~~NLYellK~n~f~-- 284 (586)
T KOG0667|consen 218 IIKNKKRFLRQAQIEIRILELLNK-HDPDDKYNIVRMLDYFYFRNHLCI--------VFELL--STNLYELLKNNKFR-- 284 (586)
T ss_pred eeccChHHHHHHHHHHHHHHHHhc-cCCCCCeeEEEeeeccccccceee--------eehhh--hhhHHHHHHhcCCC--
Confidence 55543 566777777777777666 333331112222222221111111 12444 24577877765432
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcC--CCCEEEEeecc
Q 003462 645 GPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRD--DGRLFHVDFGY 696 (818)
Q Consensus 645 ~~~~i~~~~~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~--~G~lfHIDFG~ 696 (818)
|+.....+.|++++.-.-+.-.-+|| +|--++||||.. .-.+==||||.
T Consensus 285 ---Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGS 337 (586)
T KOG0667|consen 285 ---GLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGS 337 (586)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEeccc
Confidence 35567789999999988888888898 799999999983 44788899993
No 201
>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl
Probab=54.41 E-value=1.3e+02 Score=32.84 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
...++..++.-.-.-+-.|| ||=+++|||++.+|.+-=+|||..-
T Consensus 98 ~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~ 144 (329)
T cd05588 98 ARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCK 144 (329)
T ss_pred HHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCcccc
Confidence 34455555433333344555 7889999999999999999999753
No 202
>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases. Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core
Probab=53.91 E-value=2.4e+02 Score=28.24 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=34.6
Q ss_pred hccCCCCCCceeEcCCCCEEEEeeccccCCCCC-----CCCCCccccHHHHHHh
Q 003462 671 LGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPK-----PFPPPMKLCKEMVEAM 719 (818)
Q Consensus 671 LGIGDRH~dNIli~~~G~lfHIDFG~ilg~~p~-----pf~~PFrLT~~mv~~m 719 (818)
+--||-+++||+++++|.+.=+|||......+. ....+.-+.||++...
T Consensus 119 i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~ 172 (253)
T cd05122 119 IIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGK 172 (253)
T ss_pred EecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHHHcCC
Confidence 456899999999999999999999976543322 1123444678876543
No 203
>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase. Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor
Probab=53.56 E-value=1.7e+02 Score=31.78 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=22.4
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=+++|||++.+|++.=+|||..
T Consensus 126 ~Dlkp~NIll~~~~~~kL~Dfg~a 149 (330)
T cd05601 126 RDIKPENVLIDRTGHIKLADFGSA 149 (330)
T ss_pred ccCchHheEECCCCCEEeccCCCC
Confidence 788999999999999999999965
No 204
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=53.36 E-value=23 Score=48.48 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=54.2
Q ss_pred CCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeeecc-
Q 003462 52 RPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLFNS- 130 (818)
Q Consensus 52 ~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~- 130 (818)
.+|=||.+.+=. .++.+|+.+.-..++.|||-++|.+ .+-|.+-.|.|.|||.+.-+++ .+|-++|+|=+-
T Consensus 1998 ~sdPyv~l~~g~-----~~~~kTkvvk~~~nP~Wne~f~~~~--~~p~~~~~l~iev~d~d~f~kd-~~G~~~i~l~~vv 2069 (2102)
T PLN03200 1998 NTNAFCKLTLGN-----GPPRQTKVVSHSSSPEWKEGFTWAF--DSPPKGQKLHISCKSKNTFGKS-SLGKVTIQIDRVV 2069 (2102)
T ss_pred CCCCeEEEEECC-----CCcccccccCCCCCCCcccceeeee--cCCCCCCceEEEEEecCccCCC-CCceEEEEHHHHh
Confidence 355577765432 2344677766666789999999854 3557788899999997643333 799999998653
Q ss_pred cccccccceeE
Q 003462 131 KMQLKTGKQKL 141 (818)
Q Consensus 131 ~~~Lr~G~~~L 141 (818)
.+.=.+|.+.|
T Consensus 2070 ~~~~~~~~~~L 2080 (2102)
T PLN03200 2070 MEGTYSGEYSL 2080 (2102)
T ss_pred cCceeeeeeec
Confidence 23223444444
No 205
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=52.64 E-value=13 Score=37.66 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=24.7
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCC
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRD 701 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~ 701 (818)
||=|++||+++++|.+.=||||...+-+
T Consensus 149 ~Dl~p~Nill~~~~~~~liDfg~~~~~~ 176 (198)
T cd05144 149 GDLSEFNILVDDDEKIYIIDWPQMVSTD 176 (198)
T ss_pred CCCCcccEEEcCCCcEEEEECCccccCC
Confidence 5889999999999999999999886554
No 206
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=52.51 E-value=8.6 Score=42.36 Aligned_cols=58 Identities=24% Similarity=0.452 Sum_probs=39.5
Q ss_pred HHHHHHHHhcc----CCCCCCceeEcCCCCEEEEeeccccCCCCCCC---CCCccccHHHHHHhC
Q 003462 663 GYSVITYILGI----GDRHLDNLLLRDDGRLFHVDFGYILGRDPKPF---PPPMKLCKEMVEAMG 720 (818)
Q Consensus 663 gysv~tYiLGI----GDRH~dNIli~~~G~lfHIDFG~ilg~~p~pf---~~PFrLT~~mv~~mG 720 (818)
..|.+-|+=+. .|--++|||||++||+=-+||||.=--..... ..|==|.||++..-|
T Consensus 153 ivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ 217 (355)
T KOG0616|consen 153 IVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKG 217 (355)
T ss_pred HHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCC
Confidence 34556677555 48899999999999999999998732111111 134457788876655
No 207
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=52.27 E-value=1.2e+02 Score=33.78 Aligned_cols=45 Identities=24% Similarity=0.331 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 653 CLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 653 ~~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
....++..++.-.-..+-.|| +|-.++|||++.+|++.=+|||..
T Consensus 102 ~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla 148 (382)
T cd05625 102 LARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLC 148 (382)
T ss_pred HHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCC
Confidence 344455444432222233454 788999999999999999999975
No 208
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=52.21 E-value=1.3e+02 Score=32.83 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=22.2
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=.++||||+.+|.+.=+|||..
T Consensus 119 rDlkp~NIll~~~~~~kl~DfG~a 142 (323)
T cd05571 119 RDLKLENLMLDKDGHIKITDFGLC 142 (323)
T ss_pred CCCCHHHEEECCCCCEEEeeCCCC
Confidence 788899999999999999999965
No 209
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=52.02 E-value=92 Score=29.81 Aligned_cols=93 Identities=15% Similarity=0.172 Sum_probs=55.5
Q ss_pred CeEEEEEeecCCCCCCCCCCCCCCCCCCCCCccCCCCceEEEEEEEeCCcccccceecccccCC-CCccccccEEecccc
Q 003462 17 PVKFRVDRLEGTLPSIKSPNSVNDRSGISSTTEERRPELYVECALYIDGAPFGLPMRTRLESMG-PMYCWNEPITLSTKY 95 (818)
Q Consensus 17 ~~~ikI~~Leg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~-~~~~Wnewl~fpI~~ 95 (818)
.+.|.|..|+|... ... .|.+..--|++..+ ...|...+.. ....|||-+.+++.+
T Consensus 8 ~~~l~i~~l~~~p~--------------------~~~--~v~v~wkr~~~~~~-~~~t~~~~~~~~~v~w~e~~~~~~tl 64 (143)
T PF10358_consen 8 QFDLTIHELENLPS--------------------SNG--KVFVKWKRGDKSKG-SGTTSRANVKNGKVQWNEEFSFPCTL 64 (143)
T ss_pred EEEEEEEEeECcCC--------------------CCC--EEEEEEEECCCCcc-ceeeeeeeccccEEEEeeEEEEEEEE
Confidence 46788888888422 123 33443333444332 2233333333 347899999999655
Q ss_pred cC-----cCccCceEEEEEeecCCCCceeEeEEEEeeecccc
Q 003462 96 RD-----LTAHSQLALTVWDVSCGKDERLVGGTTILLFNSKM 132 (818)
Q Consensus 96 ~d-----LPr~a~L~~ti~~~~~~~~~~~vG~~~~~LFd~~~ 132 (818)
-- --..-.+.|+|+...+.++...+|.+++.|=++=+
T Consensus 65 ~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~ 106 (143)
T PF10358_consen 65 YRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYAN 106 (143)
T ss_pred EEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhC
Confidence 33 13455789999988533333689999998866533
No 210
>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to
Probab=51.86 E-value=1.6e+02 Score=31.94 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.8
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=.++|||++.+|++.-+|||..
T Consensus 120 rDikp~Nill~~~~~~kL~Dfg~~ 143 (321)
T cd05591 120 RDLKLDNILLDAEGHCKLADFGMC 143 (321)
T ss_pred cCCCHHHeEECCCCCEEEeecccc
Confidence 677889999999999999999965
No 211
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=51.84 E-value=1.5e+02 Score=30.74 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=22.5
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|-+++|||++++|.+.=+|||..
T Consensus 126 ~dl~~~Nill~~~~~~~l~dfg~~ 149 (260)
T cd05069 126 RDLRAANILVGDNLVCKIADFGLA 149 (260)
T ss_pred cccCcceEEEcCCCeEEECCCccc
Confidence 899999999999999999999965
No 212
>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota. Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o
Probab=51.46 E-value=1.9e+02 Score=31.60 Aligned_cols=25 Identities=36% Similarity=0.602 Sum_probs=22.7
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=.++||||+.+|++-=+|||..-
T Consensus 120 ~Dikp~Nili~~~~~~kL~DfG~~~ 144 (329)
T cd05618 120 RDLKLDNVLLDSEGHIKLTDYGMCK 144 (329)
T ss_pred CCCCHHHEEECCCCCEEEeeCCccc
Confidence 7889999999999999999999653
No 213
>PRK12274 serine/threonine protein kinase; Provisional
Probab=51.09 E-value=24 Score=37.25 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=25.8
Q ss_pred HHHhcc--CCC-CCCceeEcCCCCEEEEeecccc
Q 003462 668 TYILGI--GDR-HLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 668 tYiLGI--GDR-H~dNIli~~~G~lfHIDFG~il 698 (818)
.+=.|| +|= .++|||++.+|++.=||||...
T Consensus 107 lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~ 140 (218)
T PRK12274 107 LHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAV 140 (218)
T ss_pred HHHCcCccCCCCCcceEEEcCCCCEEEEECCCce
Confidence 345677 787 4799999999999999999874
No 214
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=51.05 E-value=26 Score=24.33 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=19.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 003462 372 VRAYAVCILERADDDELQCYLLQLVQALR 400 (818)
Q Consensus 372 VR~yAv~~L~~~~d~~l~~yL~QLVQaLk 400 (818)
||.+|+..|.++.|++ .++-|+++|+
T Consensus 1 VR~~Aa~aLg~igd~~---ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPR---AIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHH---HHHHHHHHhc
Confidence 8999999999999854 5566666664
No 215
>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin
Probab=49.85 E-value=3.5e+02 Score=28.88 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=24.3
Q ss_pred cCCCCCCceeEcCCCCEEEEeeccccC
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
-||-+++||||+.+|.+.=+|||....
T Consensus 126 H~dlkp~Nili~~~~~~~l~dfg~~~~ 152 (316)
T cd05574 126 YRDLKPENILLHESGHIMLSDFDLSKQ 152 (316)
T ss_pred ccCCChHHeEEcCCCCEEEeecchhhc
Confidence 489999999999999999999997654
No 216
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=49.49 E-value=2.6e+02 Score=29.80 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|-.++||+++.+|.+.=+|||..-
T Consensus 161 ~dlkp~Nili~~~~~~kl~D~g~~~ 185 (304)
T cd05101 161 RDLAARNVLVTENNVMKIADFGLAR 185 (304)
T ss_pred cccccceEEEcCCCcEEECCCccce
Confidence 6889999999999999999999764
No 217
>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,
Probab=49.30 E-value=2.5e+02 Score=30.59 Aligned_cols=66 Identities=26% Similarity=0.319 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccccC--CCCC-----CCCCCccccHHHHHHh
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYILG--RDPK-----PFPPPMKLCKEMVEAM 719 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~ilg--~~p~-----pf~~PFrLT~~mv~~m 719 (818)
...++..++.---..+-.|| ||=.++|||++.+|++.=+|||.... .... ....|.=+.||++..+
T Consensus 104 ~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 178 (331)
T cd05597 104 ARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAM 178 (331)
T ss_pred HHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhc
Confidence 34455544433222333444 78889999999999999999996532 1111 1123445778887654
No 218
>PRK10271 thiK thiamine kinase; Provisional
Probab=49.06 E-value=14 Score=38.11 Aligned_cols=35 Identities=26% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHhccCCCCCCceeEcCCCCEEEEeeccccCCCCC
Q 003462 668 TYILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPK 703 (818)
Q Consensus 668 tYiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~~p~ 703 (818)
..++.=||=|++||+++++| +.=|||++.=..||.
T Consensus 76 ~~~p~H~D~~~~N~~~~~~~-~~lIDwe~a~~gDp~ 110 (188)
T PRK10271 76 RLAPLHMDVHAGNLVHSASG-LRLIDWEYAGDGDIA 110 (188)
T ss_pred CeeeecCCCCCccEEEECCC-EEEEeCCcccCCCHH
Confidence 45777899999999998888 889999998777754
No 219
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=49.06 E-value=38 Score=35.39 Aligned_cols=45 Identities=20% Similarity=0.097 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 655 ETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 655 ~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
..++..+|.-.-.-+=.|| +|=+++||+++.+|.+.-+|||....
T Consensus 103 ~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~ 149 (269)
T cd05042 103 QRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALE 149 (269)
T ss_pred HHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccc
Confidence 3444444333223334455 78899999999999999999997643
No 220
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=48.50 E-value=1.3e+02 Score=31.12 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.2
Q ss_pred cCCCCCCceeEcCCCCEEEEeecccc
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~il 698 (818)
-||-+++||+++++|.+.=+|||..-
T Consensus 125 H~dl~p~nil~~~~~~~~l~dfg~~~ 150 (265)
T cd06631 125 HRDIKGNNVMLMPNGIIKLIDFGCAR 150 (265)
T ss_pred cCCcCHHhEEECCCCeEEeccchhhH
Confidence 48999999999999999999999653
No 221
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=48.22 E-value=1.9e+02 Score=31.34 Aligned_cols=27 Identities=37% Similarity=0.635 Sum_probs=24.0
Q ss_pred hcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 671 LGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 671 LGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
.|| +|=.++|||++.+|.+.=+|||..
T Consensus 115 ~~ivHrDikp~NIll~~~~~~kL~Dfg~~ 143 (325)
T cd05594 115 KNVVYRDLKLENLMLDKDGHIKITDFGLC 143 (325)
T ss_pred CCEEecCCCCCeEEECCCCCEEEecCCCC
Confidence 355 899999999999999999999965
No 222
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=47.72 E-value=2.6e+02 Score=29.99 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.1
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
||=.++|||++.+|++.=+|||..-.
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~~ 183 (314)
T cd05099 158 RDLAARNVLVTEDNVMKIADFGLARG 183 (314)
T ss_pred ccccceeEEEcCCCcEEEcccccccc
Confidence 78889999999999999999997643
No 223
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=47.53 E-value=1.9e+02 Score=31.00 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=31.2
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCCCC--CCCCCccccHHHHH
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK--PFPPPMKLCKEMVE 717 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~p~--pf~~PFrLT~~mv~ 717 (818)
||-+++||+++++|.+.=+|||......+. ....+.-+.||++.
T Consensus 139 ~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~~~~~~~~~y~aPE~~~ 184 (307)
T cd06607 139 RDIKAGNILLTEPGTVKLADFGSASLVSPANSFVGTPYWMAPEVIL 184 (307)
T ss_pred cCCCcccEEECCCCCEEEeecCcceecCCCCCccCCccccCceeee
Confidence 789999999999999999999966433222 12234446677653
No 224
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=47.52 E-value=29 Score=44.53 Aligned_cols=49 Identities=29% Similarity=0.430 Sum_probs=39.5
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCCC-------CCCCCCccccHHHHHHhCCC
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRDP-------KPFPPPMKLCKEMVEAMGGA 722 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~p-------~pf~~PFrLT~~mv~~mGg~ 722 (818)
.|=-||||||+..||+=-.|||-++--+. .+.+.|==++||+..+||+-
T Consensus 199 RDiKPDNvLld~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~ 254 (1317)
T KOG0612|consen 199 RDIKPDNVLLDKSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDG 254 (1317)
T ss_pred ccCCcceeEecccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCC
Confidence 47789999999999999999998874331 23455777999999999864
No 225
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=46.76 E-value=40 Score=37.34 Aligned_cols=65 Identities=23% Similarity=0.222 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccccCCCCC--C-CCCCccccHHHHHH
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYILGRDPK--P-FPPPMKLCKEMVEA 718 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~ilg~~p~--p-f~~PFrLT~~mv~~ 718 (818)
...++..++.---.-+=.|| +|-.++|||++.+|++.-+|||..-.-... . ...|-=+.||+...
T Consensus 133 ~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~ 202 (340)
T PTZ00426 133 GCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLN 202 (340)
T ss_pred HHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCCCcceecCChhhcCHHHHhC
Confidence 33444444432222233454 788899999999999999999976432211 1 12233366776643
No 226
>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172. This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.
Probab=46.05 E-value=14 Score=38.81 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.0
Q ss_pred ccCCCCCCceeEcCCCCEEEEeeccc
Q 003462 672 GIGDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 672 GIGDRH~dNIli~~~G~lfHIDFG~i 697 (818)
-=||=|++|||++++| +.=|||++.
T Consensus 156 ~HgD~~~~Nii~~~~~-~~iIDwe~a 180 (226)
T TIGR02172 156 LHGDFQIGNLITSGKG-TYWIDLGDF 180 (226)
T ss_pred EecCCCCCcEEEcCCC-cEEEechhc
Confidence 3689999999999988 889999875
No 227
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=45.94 E-value=1.7e+02 Score=31.83 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.8
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=+++|||++.+|++.=+|||..-
T Consensus 125 ~dlkp~Nil~~~~~~~kL~Dfg~a~ 149 (333)
T cd05600 125 RDLKPENFLIDASGHIKLTDFGLSK 149 (333)
T ss_pred cCCCHHHEEECCCCCEEEEeCcCCc
Confidence 7889999999999999999999664
No 228
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=45.77 E-value=3.4e+02 Score=27.59 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.8
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||-+++|||++.+|.+.=+|||...
T Consensus 117 ~dl~p~nili~~~~~~~l~d~g~~~ 141 (250)
T cd05085 117 RDLAARNCLVGENNVLKISDFGMSR 141 (250)
T ss_pred cccChheEEEcCCCeEEECCCccce
Confidence 8999999999999999999999653
No 229
>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as
Probab=45.68 E-value=3.3e+02 Score=28.79 Aligned_cols=46 Identities=20% Similarity=0.124 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 653 CLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 653 ~~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
....++..++.--..-+-.|| +|=.++||+++++|.+.=+|||...
T Consensus 103 ~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~ 150 (285)
T cd05630 103 RAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAV 150 (285)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeecccee
Confidence 344444444432222233455 6888999999999999999999664
No 230
>PRK05231 homoserine kinase; Provisional
Probab=45.14 E-value=43 Score=36.53 Aligned_cols=71 Identities=15% Similarity=0.067 Sum_probs=38.4
Q ss_pred HhccCCCCCCceeEcCCCCEEEEeeccccCCCCCCCCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCc
Q 003462 670 ILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSS 745 (818)
Q Consensus 670 iLGIGDRH~dNIli~~~G~lfHIDFG~ilg~~p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~ 745 (818)
-+-=||=|++|||++.++-..-|||+.+--..+. |-|..-+...+...+......+...+..+|...|.=.
T Consensus 188 ~liHgD~~~~Nil~~~~~~~~iIDf~~~~~~~~~-----~DlA~~~~~~~~~~~~~~~~~~~~~~l~gY~~~~~Ls 258 (319)
T PRK05231 188 GVIHADLFRDNVLFEGDRLSGFIDFYFACNDKLL-----YDVAITLNDWCFEADGSLDATKARALLAAYQSVRPLT 258 (319)
T ss_pred ccCCCCCCCCcEEEECCceEEEEecccccCCchH-----HHHHHHHHHHHccCCCCcCHHHHHHHHHHHhhcCCCC
Confidence 3555999999999985443479999876322211 1121111111111111111356777777787666544
No 231
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=44.86 E-value=3.6e+02 Score=28.46 Aligned_cols=45 Identities=29% Similarity=0.411 Sum_probs=31.0
Q ss_pred cCCCCCCceeEcCCCCEEEEeeccccCCCCC--C-CCCCccccHHHHH
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYILGRDPK--P-FPPPMKLCKEMVE 717 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~ilg~~p~--p-f~~PFrLT~~mv~ 717 (818)
-||=+++||+|+.+|.+--+|||+.-..... . ...|.-..||++.
T Consensus 124 H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (290)
T cd05580 124 YRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEIIL 171 (290)
T ss_pred cCCCCHHHEEECCCCCEEEeeCCCccccCCCCCCCCCCccccChhhhc
Confidence 4899999999999999999999976432211 1 1223345677654
No 232
>cd05119 RIO RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct
Probab=44.62 E-value=16 Score=36.32 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.3
Q ss_pred cCCCCCCceeEcCCCCEEEEeeccccCC
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYILGR 700 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~ilg~ 700 (818)
=||=|++|||++ +|.+.=||||..-..
T Consensus 138 H~Dl~p~Nili~-~~~~~liDfg~a~~~ 164 (187)
T cd05119 138 HGDLSEYNILVD-DGKVYIIDVPQAVEI 164 (187)
T ss_pred cCCCChhhEEEE-CCcEEEEECcccccc
Confidence 478899999999 999999999987443
No 233
>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]
Probab=44.59 E-value=2.8e+02 Score=29.19 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCccccccEEEEeeCCCC--eeeeec-CccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHH
Q 003462 577 QLVVQMVSLMDRLLKLENLDLHLTPYNVLATGQDEG--LLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATC 653 (818)
Q Consensus 577 ~lvlQli~lmd~ll~~~~ldL~l~~Y~Vlp~~~~~G--lIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~ 653 (818)
.++.|=.+++.++.. +-+....++......| .+||++ +.++.+ |+.+...++.. .+.
T Consensus 55 ~Rt~~Ear~l~k~~~-----~GI~~P~l~~~D~~~~~i~ME~~~g~~~vk~----------~i~~~~~~~~~-----d~~ 114 (229)
T KOG3087|consen 55 KRTKQEARLLAKCRA-----LGIPAPRLIFIDTYGGQIYMEFIDGASTVKD----------FILSTMEDESE-----DEG 114 (229)
T ss_pred HHHHHHHHHHHHHHH-----hCCCCceEEEEecCCCeEEEEeccchhHHHH----------HHHHHccCccc-----chh
Confidence 455566666666554 3456677777655544 589998 566544 33444333222 223
Q ss_pred HHHHHHHHHHHHHHHHHhc--cCCCCCCceeEcC-CCCE--EEEeeccccCC
Q 003462 654 LETFIKSCAGYSVITYILG--IGDRHLDNLLLRD-DGRL--FHVDFGYILGR 700 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLG--IGDRH~dNIli~~-~G~l--fHIDFG~ilg~ 700 (818)
..+|.+-...-----+.=+ =||--..|||+.+ .++. +-||||.-.+.
T Consensus 115 ~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~~s 166 (229)
T KOG3087|consen 115 LAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSSVS 166 (229)
T ss_pred HHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchhcc
Confidence 3444444322111111111 3899999999995 5566 89999977665
No 234
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=44.46 E-value=2.2e+02 Score=30.98 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||-.++|||++.+|.+.=+|||..-
T Consensus 158 ~dlkp~Nill~~~~~~kL~Dfg~~~ 182 (334)
T cd05100 158 RDLAARNVLVTEDNVMKIADFGLAR 182 (334)
T ss_pred cccccceEEEcCCCcEEECCcccce
Confidence 5667999999999999999999653
No 235
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=44.08 E-value=53 Score=34.79 Aligned_cols=108 Identities=17% Similarity=0.273 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceeEc--CCCCEEEEeeccccCCCCCCCCCCccccHHHHHHhCCCCccccchHHHHHH
Q 003462 658 IKSCAGYSVITYILGIGDRHLDNLLLR--DDGRLFHVDFGYILGRDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCC 735 (818)
Q Consensus 658 ~~S~Agysv~tYiLGIGDRH~dNIli~--~~G~lfHIDFG~ilg~~p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~ 735 (818)
.-.+.-.+|+=|+.|=+|||--|+.=. ..|-++|+|=|--||+-...+..= | -+ -.+-..|+....
T Consensus 89 LldliDm~IFDFLigN~DRhhye~f~~fgn~~~l~~LDNgrgFG~~~~de~sI--l--------aP--L~QcC~iRrST~ 156 (221)
T PF06702_consen 89 LLDLIDMAIFDFLIGNMDRHHYETFNKFGNEGFLLHLDNGRGFGRPSHDELSI--L--------AP--LYQCCRIRRSTW 156 (221)
T ss_pred hhHHHHHHHHHHHhcCCcchhhhhhhccCCCceEEEEeCCcccCCCCCCccch--h--------cc--HHHhhhccccHH
Confidence 345567789999999999999885522 467799999999999875543110 1 11 112256777777
Q ss_pred HHHHHHHcCchHHHHHHHHH-ccCCCCCCcCCchHHHHHHHHHcC
Q 003462 736 EAYNILRKSSNLILNLFHLM-AGSNIPDIASDPEKGILKLQEKFR 779 (818)
Q Consensus 736 ~a~~~LRk~~~~il~l~~lm-~~~~ip~~~~~~~~~i~~l~~~l~ 779 (818)
..+..|++....+..++.-. ..+.+.-+-.+ ..+..+.+|+.
T Consensus 157 ~rL~~l~~~~~~Ls~~m~~s~~~D~l~PvL~e--~Hl~AldrRL~ 199 (221)
T PF06702_consen 157 ERLQLLSKGGYRLSDLMRESLSRDPLAPVLTE--PHLEALDRRLD 199 (221)
T ss_pred HHHHHhccCCCcHHHHHHHHhccCccCccCcH--HHHHHHHHHHH
Confidence 77777776666666655543 34444333333 24556666654
No 236
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=43.62 E-value=18 Score=38.38 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 661 CAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 661 ~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|......+=-|| +|=+++|||++.+|++.=||||..
T Consensus 151 i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~ 189 (239)
T PRK01723 151 IGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRG 189 (239)
T ss_pred HHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCc
Confidence 3433334444555 599999999999999999999955
No 237
>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha. Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a
Probab=43.14 E-value=2.1e+02 Score=31.08 Aligned_cols=25 Identities=36% Similarity=0.609 Sum_probs=22.4
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|=.++|||++.+|++.-+|||..-
T Consensus 125 rDikp~Nill~~~~~ikL~Dfg~~~ 149 (323)
T cd05615 125 RDLKLDNVMLDSEGHIKIADFGMCK 149 (323)
T ss_pred cCCCHHHeEECCCCCEEEecccccc
Confidence 6888999999999999999999653
No 238
>cd05156 ChoK_euk Choline Kinase (ChoK) in eukaryotes. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC) and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. Along with PCho, it is involved in malignant transformation through Ras oncogenes in various human cancer
Probab=42.61 E-value=19 Score=38.99 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=29.1
Q ss_pred HHHHhccCCCCCCceeEcCC----CCEEEEeeccccCCC
Q 003462 667 ITYILGIGDRHLDNLLLRDD----GRLFHVDFGYILGRD 701 (818)
Q Consensus 667 ~tYiLGIGDRH~dNIli~~~----G~lfHIDFG~ilg~~ 701 (818)
...++-=||=|++|||++++ |.+.-|||.+.--.+
T Consensus 177 ~~~~lcH~Dl~~~Nil~~~~~~~~~~i~lIDwEya~~~~ 215 (302)
T cd05156 177 SPVVFCHNDLQEGNILLLNPSSETKKLVLIDFEYASYNY 215 (302)
T ss_pred CCceEEecCCCcCeEEecCCCCCCCcEEEEeeCCCCCCC
Confidence 45678889999999999974 999999998874444
No 239
>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp
Probab=42.49 E-value=2.2e+02 Score=30.91 Aligned_cols=24 Identities=46% Similarity=0.707 Sum_probs=22.0
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=.++|||++.+|++--+|||..
T Consensus 120 ~dlkp~Nill~~~~~~kL~Dfg~a 143 (316)
T cd05592 120 RDLKLDNVLLDKDGHIKIADFGMC 143 (316)
T ss_pred CCCCHHHeEECCCCCEEEccCcCC
Confidence 688899999999999999999965
No 240
>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional
Probab=42.14 E-value=86 Score=34.09 Aligned_cols=70 Identities=21% Similarity=0.205 Sum_probs=49.7
Q ss_pred eeeeec-CccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcC----
Q 003462 613 LLEFIP-SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLLRD---- 685 (818)
Q Consensus 613 lIE~V~-s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~---- 685 (818)
+.|.++ +.|+.+++.. |.. .+. .........+.+|....--+--|| ||=++.|||++.
T Consensus 113 Vte~l~~~~sL~~~~~~------~~~--~~~-------~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~ 177 (268)
T PRK15123 113 ITEDLAPTISLEDYCAD------WAT--NPP-------DPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPG 177 (268)
T ss_pred EEeeCCCCccHHHHHHh------hcc--cCC-------CHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccC
Confidence 578888 6788877632 111 010 123456778888888877788887 899999999985
Q ss_pred ---CCCEEEEeeccc
Q 003462 686 ---DGRLFHVDFGYI 697 (818)
Q Consensus 686 ---~G~lfHIDFG~i 697 (818)
+++++=|||+-+
T Consensus 178 ~~~~~~~~LIDl~r~ 192 (268)
T PRK15123 178 REEDLKLSVIDLHRA 192 (268)
T ss_pred CCCCceEEEEECCcc
Confidence 578999999855
No 241
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=42.10 E-value=13 Score=41.68 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.5
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|--++|||++.+||+.-.|||..=
T Consensus 149 RDlKPENILLd~~GHi~LtDFgL~k 173 (357)
T KOG0598|consen 149 RDLKPENILLDEQGHIKLTDFGLCK 173 (357)
T ss_pred ccCCHHHeeecCCCcEEEeccccch
Confidence 4888999999999999999999663
No 242
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=42.08 E-value=2.2e+02 Score=31.13 Aligned_cols=43 Identities=26% Similarity=0.260 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 655 ETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 655 ~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
..++..++--.-.-+-.|| +|-.++||||+.+|++.=+|||..
T Consensus 98 ~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~ 142 (328)
T cd05593 98 RFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLC 142 (328)
T ss_pred HHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCC
Confidence 3444444432222233455 788999999999999999999965
No 243
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=41.83 E-value=2.8e+02 Score=29.08 Aligned_cols=30 Identities=33% Similarity=0.517 Sum_probs=25.5
Q ss_pred HHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 669 YILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 669 YiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+-.|+ ||-+++||+++.+|++.=+|||+..
T Consensus 133 H~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~ 164 (286)
T cd06614 133 HSQNVIHRDIKSDNILLSKDGSVKLADFGFAA 164 (286)
T ss_pred HhCCeeeCCCChhhEEEcCCCCEEECccchhh
Confidence 33565 8999999999999999999999754
No 244
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=41.61 E-value=3.7e+02 Score=28.60 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=22.5
Q ss_pred cCCCCCCceeEcCCCCEEEEeeccc
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~i 697 (818)
-||=|++||+++.+|.+.-+|||..
T Consensus 124 H~dl~p~NIll~~~~~~~l~dfg~~ 148 (305)
T cd05609 124 HRDLKPDNLLITSMGHIKLTDFGLS 148 (305)
T ss_pred ccCCchHHEEECCCCCEEEeeCCCc
Confidence 3788999999999999999999964
No 245
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=41.51 E-value=1.8e+02 Score=29.22 Aligned_cols=90 Identities=19% Similarity=0.273 Sum_probs=60.2
Q ss_pred CCCceEEEEEEEeCCc-------ccccceecccccC---CCCccccccEEecccccCcCccCceEEEEEeecCCCCceeE
Q 003462 51 RRPELYVECALYIDGA-------PFGLPMRTRLESM---GPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLV 120 (818)
Q Consensus 51 ~~~~l~V~~~l~~~~~-------~l~~p~~T~~~~~---~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~v 120 (818)
+.+.||++.++.+|.. .+.--.|+.+..- .+...||--+++-.+.....-==+|.|+||..+.-+...+.
T Consensus 15 ~~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~~~ 94 (168)
T PF07162_consen 15 EEDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDRVE 94 (168)
T ss_pred CCCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeEEe
Confidence 3568999999987442 2111223333222 34467999999999888885556999999998876666777
Q ss_pred eEEEEeeecccccccccceeE--Eeec
Q 003462 121 GGTTILLFNSKMQLKTGKQKL--RLWP 145 (818)
Q Consensus 121 G~~~~~LFd~~~~Lr~G~~~L--~lWp 145 (818)
|-..+.| -+..|.+.+ .+|.
T Consensus 95 GYG~~~l-----P~~pG~h~~~v~~wr 116 (168)
T PF07162_consen 95 GYGFCHL-----PTQPGRHEVEVPTWR 116 (168)
T ss_pred EEeEEEe-----CCCCceEEEEEEEEe
Confidence 7666666 345777655 4664
No 246
>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481
Probab=40.95 E-value=2.5e+02 Score=34.49 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.7
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|=.++||||+.+|++.=+|||..
T Consensus 128 rDLKP~NILl~~~g~vkL~DFGls 151 (669)
T cd05610 128 RDLKPDNMLISNEGHIKLTDFGLS 151 (669)
T ss_pred CCccHHHEEEcCCCCEEEEeCCCC
Confidence 577899999999999999999965
No 247
>PHA00451 protein kinase
Probab=40.95 E-value=59 Score=35.49 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=43.7
Q ss_pred HHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccC--CCCCCceeEcCCCCEEEEe
Q 003462 624 QILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIG--DRHLDNLLLRDDGRLFHVD 693 (818)
Q Consensus 624 ~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIG--DRH~dNIli~~~G~lfHID 693 (818)
++...+..+..++...+.++..++.. ...|+..|--. =-|..||. |=|.+|||++++|..+-.|
T Consensus 147 d~h~~ya~~a~~~~e~~~d~~~~~~~----~~~FIETCk~I--RkFF~GIASFDmHSGNiMf~~~g~p~ITD 212 (362)
T PHA00451 147 DVHHHYAAAAYIIIECCSDAAEEYPG----SQEFIETCKMI--RKFFYGIASFDMHSGNIMFDQDGVPYITD 212 (362)
T ss_pred hHHHHHHHHHHHHHhccCCHHhccCC----chhHHHHHHHH--HHHHhhhhcccccCCceeeCCCCCeEecC
Confidence 44444567778888877776655543 34677777532 23444443 8999999999999998776
No 248
>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily.; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....
Probab=40.82 E-value=16 Score=36.89 Aligned_cols=30 Identities=37% Similarity=0.497 Sum_probs=20.6
Q ss_pred HHHhccCCCCCCceeEc-CCCCEEEEeeccc
Q 003462 668 TYILGIGDRHLDNLLLR-DDGRLFHVDFGYI 697 (818)
Q Consensus 668 tYiLGIGDRH~dNIli~-~~G~lfHIDFG~i 697 (818)
...+.=||=|++|||++ ++|++--|||+..
T Consensus 165 ~~~~~HgD~~~~Nil~~~~~~~i~iID~e~a 195 (239)
T PF01636_consen 165 PPVLIHGDLHPGNILVDPSDGRIGIIDFEDA 195 (239)
T ss_dssp CEEEE-SS-SGGGEEEESSTTEEEE--GTT-
T ss_pred CcEEEEeccccccceeeeccceeEEEecccc
Confidence 45566799999999999 6777779999875
No 249
>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of
Probab=40.49 E-value=4.5e+02 Score=27.43 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.3
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=+++||+++.+|.+.=+|||...
T Consensus 119 ~di~p~Nil~~~~~~~~l~dfg~~~ 143 (277)
T cd05577 119 RDLKPENVLLDDHGNVRISDLGLAV 143 (277)
T ss_pred CCCCHHHEEECCCCCEEEccCcchh
Confidence 7888999999999999999999654
No 250
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=40.38 E-value=2.6e+02 Score=28.82 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=22.5
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=+++|||++++|.+.=+|||..-
T Consensus 126 ~di~p~Nili~~~~~~~l~dfg~~~ 150 (260)
T cd05070 126 RDLRSANILVGDGLVCKIADFGLAR 150 (260)
T ss_pred CCCccceEEEeCCceEEeCCceeee
Confidence 7889999999999999999999763
No 251
>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2. Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph
Probab=40.05 E-value=62 Score=35.20 Aligned_cols=24 Identities=38% Similarity=0.692 Sum_probs=22.1
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=.++|||++.+|++.-+|||..
T Consensus 129 rDlkp~Nili~~~~~~kl~DfG~~ 152 (332)
T cd05614 129 RDIKLENILLDSEGHVVLTDFGLS 152 (332)
T ss_pred cCCCHHHeEECCCCCEEEeeCcCC
Confidence 788899999999999999999965
No 252
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=39.91 E-value=1e+02 Score=36.68 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=50.1
Q ss_pred eeeeecCccHHHHHhhh-----hhHHHHHHHhCCCCC--CCCcccHHHHHHHHHHHHHHHHHHHHhcc--CCCCCCceeE
Q 003462 613 LLEFIPSRSLAQILSEH-----RSIISYLQKFHPDEH--GPFGITATCLETFIKSCAGYSVITYILGI--GDRHLDNLLL 683 (818)
Q Consensus 613 lIE~V~s~tl~~I~~~~-----~~l~~~l~~~~~~~~--~~~~i~~~~~~~F~~S~Agysv~tYiLGI--GDRH~dNIli 683 (818)
+.|++++.||.+.+... +.+.+|+......+. ............++..++......+=.|| +|-+++|||+
T Consensus 263 V~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl 342 (507)
T PLN03224 263 VWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLV 342 (507)
T ss_pred EEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEE
Confidence 35677778888887642 345666653221110 00001122344555555433222233344 7889999999
Q ss_pred cCCCCEEEEeecccc
Q 003462 684 RDDGRLFHVDFGYIL 698 (818)
Q Consensus 684 ~~~G~lfHIDFG~il 698 (818)
+.+|.+.=+|||...
T Consensus 343 ~~~~~~kL~DFGla~ 357 (507)
T PLN03224 343 TVDGQVKIIDFGAAV 357 (507)
T ss_pred CCCCcEEEEeCcCcc
Confidence 999999999999763
No 253
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=39.89 E-value=4.9e+02 Score=27.68 Aligned_cols=44 Identities=32% Similarity=0.460 Sum_probs=32.3
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCCCC------CCCCCccccHHHHH
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK------PFPPPMKLCKEMVE 717 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~p~------pf~~PFrLT~~mv~ 717 (818)
||-+++|||++.+|.+.=+|||......+. ....|.-+.||+..
T Consensus 139 ~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 188 (297)
T cd06656 139 RDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVT 188 (297)
T ss_pred CCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHc
Confidence 889999999999999999999976432211 12345567788765
No 254
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=39.45 E-value=2.5e+02 Score=30.23 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=22.0
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|=+++|||++.+|++.-+|||..
T Consensus 117 rDlkp~Nili~~~~~~kl~Dfg~~ 140 (312)
T cd05585 117 RDLKPENILLDYQGHIALCDFGLC 140 (312)
T ss_pred CCCCHHHeEECCCCcEEEEECccc
Confidence 678899999999999999999965
No 255
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=39.04 E-value=2.2e+02 Score=30.93 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=22.5
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=.++|||++.+|.+.=+|||..-
T Consensus 119 ~Dlkp~NIll~~~~~~kL~Dfg~~~ 143 (323)
T cd05595 119 RDIKLENLMLDKDGHIKITDFGLCK 143 (323)
T ss_pred cCCCHHHEEEcCCCCEEecccHHhc
Confidence 6888999999999999999999653
No 256
>smart00090 RIO RIO-like kinase.
Probab=38.72 E-value=49 Score=35.08 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhc-c--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 655 ETFIKSCAGYSVITYILG-I--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 655 ~~F~~S~Agysv~tYiLG-I--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
..+..+++...-.-+--| | ||=|++|||++ +|++.=||||...
T Consensus 151 ~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~ 196 (237)
T smart00090 151 FELYDDILEEMRKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSV 196 (237)
T ss_pred HHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-CCCEEEEEChhhh
Confidence 455556554433333345 4 79999999999 8999999999754
No 257
>TIGR00938 thrB_alt homoserine kinase, Neisseria type. Homoserine kinase is required in the biosynthesis of threonine from aspartate.The member of this family from Pseudomonas aeruginosa was shown by direct assay and complementation to act specifically as a homoserine kinase.
Probab=38.67 E-value=71 Score=34.84 Aligned_cols=29 Identities=24% Similarity=0.167 Sum_probs=24.7
Q ss_pred HHhccCCCCCCceeEcCCCCEEEEeeccc
Q 003462 669 YILGIGDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 669 YiLGIGDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+.+-=||=|.+||+++++|...-|||+++
T Consensus 187 ~~l~HgD~~~~Nvl~~~~~~~~vIDfd~~ 215 (307)
T TIGR00938 187 RGVIHADLFPDNVLFDGDSVKGVIDFYFA 215 (307)
T ss_pred CccCCCCCCcCcEEEECCceEEEeecccc
Confidence 45666999999999998887789999876
No 258
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=38.26 E-value=1.2e+02 Score=34.13 Aligned_cols=51 Identities=29% Similarity=0.488 Sum_probs=35.4
Q ss_pred Hhcc--CCCCCCceeEcCCCCEEEEeeccccCCCCC-------CCCCCccccHHHHHHhC
Q 003462 670 ILGI--GDRHLDNLLLRDDGRLFHVDFGYILGRDPK-------PFPPPMKLCKEMVEAMG 720 (818)
Q Consensus 670 iLGI--GDRH~dNIli~~~G~lfHIDFG~ilg~~p~-------pf~~PFrLT~~mv~~mG 720 (818)
-.|| +|=.++|||++++|++.=+|||........ ....|.=+.||++...+
T Consensus 160 ~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~ 219 (370)
T cd05621 160 SMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQG 219 (370)
T ss_pred HCCeEecCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccC
Confidence 3455 688899999999999999999976432211 12334457788876654
No 259
>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr
Probab=38.23 E-value=4.4e+02 Score=27.67 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=25.1
Q ss_pred HHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 669 YILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 669 YiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+-.|| ||=.++||+++.+|.+.=+|||...
T Consensus 112 H~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~ 143 (277)
T cd05607 112 HSMDIVYRDMKPENVLLDDQGNCRLSDLGLAV 143 (277)
T ss_pred HHCCEEEccCChHhEEEcCCCCEEEeeceeee
Confidence 33465 7889999999999999999999654
No 260
>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins. This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain
Probab=37.28 E-value=25 Score=35.46 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=23.9
Q ss_pred HHHhccCCCCCCceeEcC--CCCEEEEeeccc
Q 003462 668 TYILGIGDRHLDNLLLRD--DGRLFHVDFGYI 697 (818)
Q Consensus 668 tYiLGIGDRH~dNIli~~--~G~lfHIDFG~i 697 (818)
...+-=||=|++|||++. +|.+.=|||+..
T Consensus 173 ~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~ 204 (223)
T cd05154 173 RPGLVHGDYRLGNVLFHPDEPRVVAVLDWELA 204 (223)
T ss_pred CcEEEECCCCcccEEEcCCCCcEEEEEecccc
Confidence 345566999999999997 566778999865
No 261
>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C. Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re
Probab=36.90 E-value=2.9e+02 Score=29.85 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=22.0
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=.++|||++++|.+--+|||+.
T Consensus 120 ~dlkp~Nill~~~~~~kl~Dfg~~ 143 (318)
T cd05570 120 RDLKLDNVLLDSEGHIKIADFGMC 143 (318)
T ss_pred cCCCHHHeEECCCCcEEecccCCC
Confidence 777899999999999999999965
No 262
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=36.68 E-value=4.9e+02 Score=26.74 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
...++..++.-.-.-+--|| ||-+++|||++++|.+--+|||..-
T Consensus 97 ~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~ 143 (257)
T cd05116 97 ITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSK 143 (257)
T ss_pred HHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCcccc
Confidence 44444444433333334454 8899999999999999999999653
No 263
>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament
Probab=36.42 E-value=66 Score=34.21 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
...++..++.--..-+=.|| ||=.++|||++.+|++.=+|||..-
T Consensus 105 ~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~ 151 (288)
T cd07871 105 VKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLAR 151 (288)
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCccee
Confidence 33444444332222233454 7889999999999999999999764
No 264
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=36.32 E-value=5e+02 Score=26.76 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=+++||+++.+|.+.-+|||...
T Consensus 130 ~di~p~nili~~~~~~~l~dfg~~~ 154 (266)
T cd05033 130 RDLAARNILVNSNLVCKVSDFGLSR 154 (266)
T ss_pred CCCCcceEEEcCCCCEEECccchhh
Confidence 6889999999999999999999664
No 265
>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re
Probab=36.13 E-value=3.1e+02 Score=27.86 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=23.3
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
||=+++|||++++|.+.=+|||....
T Consensus 117 ~di~~~nil~~~~~~~~l~dfg~~~~ 142 (265)
T cd05579 117 RDLKPDNILIDSNGHLKLTDFGLSKV 142 (265)
T ss_pred CCCCHHHeEEcCCCCEEEEecccchh
Confidence 88999999999999999999996543
No 266
>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=35.69 E-value=92 Score=32.31 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.3
Q ss_pred CCCCCCceeEcCCC-----CEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDG-----RLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G-----~lfHIDFG~i 697 (818)
||-+++|||++.++ .+.-+|||..
T Consensus 130 ~dl~p~nil~~~~~~~~~~~~~l~dfg~~ 158 (269)
T cd05044 130 RDLAARNCLVSEKGYDADRVVKIGDFGLA 158 (269)
T ss_pred CCCChheEEEecCCCCCCcceEECCcccc
Confidence 78899999999877 8889999965
No 267
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=35.61 E-value=57 Score=35.06 Aligned_cols=29 Identities=24% Similarity=0.152 Sum_probs=24.0
Q ss_pred HHhccCCCCCCceeEcCCCCEEEEeeccc
Q 003462 669 YILGIGDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 669 YiLGIGDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+.+-=||-|++|||+++++-.--|||++.
T Consensus 175 ~~l~HgD~~~~Nil~~~~~~~~iIDfe~a 203 (296)
T cd05153 175 RGVIHADLFRDNVLFDGDELSGVIDFYFA 203 (296)
T ss_pred CcCCccCcCcccEEEeCCceEEEeehhhh
Confidence 44556999999999998776779999875
No 268
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=35.59 E-value=86 Score=32.92 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=30.1
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCCCC------CCCCCccccHHHH
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK------PFPPPMKLCKEMV 716 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~p~------pf~~PFrLT~~mv 716 (818)
||-.++|||++++|.+.-+|||....-... ....+.-+.||..
T Consensus 148 ~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~ 196 (286)
T cd06638 148 RDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVI 196 (286)
T ss_pred cCCCHHhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChhhh
Confidence 788999999999999999999976432111 1123445667764
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=35.59 E-value=71 Score=32.40 Aligned_cols=76 Identities=20% Similarity=0.179 Sum_probs=48.0
Q ss_pred HhhHhhcCCCCCCCHHHHHHHHHHHhcCC--chHHHHHHHH---HHHHHhcccc---chhhHHHHHHHHhhc--Cchhhh
Q 003462 356 VCDALELLSPVFESEEVRAYAVCILERAD--DDELQCYLLQ---LVQALRFERS---DKSRLSQFLVQRSSH--NIELAS 425 (818)
Q Consensus 356 ~~~aLeLL~~~f~~~~VR~yAv~~L~~~~--d~~l~~yL~Q---LVQaLkyE~~---~~s~L~~fLi~ra~~--n~~i~~ 425 (818)
..-|..||+-.=.+|.+++.|++.|+++. ++++...|++ .++||||=.. .++.-++-+++-|.+ |+.+=+
T Consensus 61 k~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~ 140 (167)
T PF07035_consen 61 KPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFY 140 (167)
T ss_pred HHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHH
Confidence 34455555555557999999999998866 4556555664 8999998532 344455656666644 334444
Q ss_pred HHHhhh
Q 003462 426 FLRWYV 431 (818)
Q Consensus 426 ~l~W~L 431 (818)
..||++
T Consensus 141 ~V~~ff 146 (167)
T PF07035_consen 141 AVFRFF 146 (167)
T ss_pred HHHHHH
Confidence 455544
No 270
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=35.08 E-value=80 Score=32.68 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.4
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|-.++||+++.+|.+.-+|||..
T Consensus 124 ~dl~p~ni~i~~~~~~kl~dfg~~ 147 (256)
T cd05059 124 RDLAARNCLVGEDNVVKVSDFGLA 147 (256)
T ss_pred ccccHhhEEECCCCcEEECCcccc
Confidence 888999999999999999999965
No 271
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=34.93 E-value=1e+02 Score=34.64 Aligned_cols=44 Identities=41% Similarity=0.640 Sum_probs=32.0
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc-----cCCCCCCC-CCCccccHHHHH
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI-----LGRDPKPF-PPPMKLCKEMVE 717 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i-----lg~~p~pf-~~PFrLT~~mv~ 717 (818)
.|-.++|+|++++||+=-.|||.+ .|...+.| ..|=-|.||.++
T Consensus 292 RDlKLENLlLDkDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVle 341 (516)
T KOG0690|consen 292 RDLKLENLLLDKDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLE 341 (516)
T ss_pred eechhhhheeccCCceEeeecccchhcccccceeccccCChhhcCchhhc
Confidence 577889999999999999999976 45544555 344456666554
No 272
>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They
Probab=34.75 E-value=4.7e+02 Score=26.37 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=23.5
Q ss_pred cCCCCCCceeEcCCCCEEEEeeccccC
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
-||=+++||+++.+|.+.=+|||+..-
T Consensus 126 H~dl~~~nil~~~~~~~~l~d~~~~~~ 152 (258)
T cd08215 126 HRDIKPQNIFLTSNGLVKLGDFGISKV 152 (258)
T ss_pred cccCChHHeEEcCCCcEEECCccceee
Confidence 468899999999999999999997643
No 273
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=33.51 E-value=38 Score=29.16 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Q 003462 368 ESEEVRAYAVCILERADDDELQCYLLQLVQALRFE 402 (818)
Q Consensus 368 ~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQaLkyE 402 (818)
+|+.||..|+..|..+.+++ .+++|+++++-+
T Consensus 43 ~~~~vr~~a~~aL~~i~~~~---~~~~L~~~l~~~ 74 (88)
T PF13646_consen 43 EDPMVRRAAARALGRIGDPE---AIPALIKLLQDD 74 (88)
T ss_dssp SSHHHHHHHHHHHHCCHHHH---THHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHhCCHH---HHHHHHHHHcCC
Confidence 56677777777777776544 455555555544
No 274
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=33.35 E-value=5.2e+02 Score=26.77 Aligned_cols=96 Identities=21% Similarity=0.187 Sum_probs=48.1
Q ss_pred ccccEEEEeeCCCCe-eeeecCccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--CC
Q 003462 599 LTPYNVLATGQDEGL-LEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGI--GD 675 (818)
Q Consensus 599 l~~Y~Vlp~~~~~Gl-IE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGI--GD 675 (818)
+..|.+...+....+ .|+++..+|.+.+...+.-...+... +.....+ .......++..++.-...-+-.|+ ||
T Consensus 71 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~-~~~~~~l--~~~~~~~~~~~i~~~l~~lH~~~i~h~d 147 (280)
T cd05049 71 VKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSP-DSPMGEL--TLSQLLQIAVQIASGMVYLASQHFVHRD 147 (280)
T ss_pred hheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhccc-ccccccc--cHHHHHHHHHHHHHHHHHHhhCCeeccc
Confidence 344455544444444 46666677777765543222222100 1111111 112223333333321111122233 66
Q ss_pred CCCCceeEcCCCCEEEEeeccc
Q 003462 676 RHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 676 RH~dNIli~~~G~lfHIDFG~i 697 (818)
-.++|||++.+|.+-=+|||..
T Consensus 148 lkp~nili~~~~~~kl~d~g~~ 169 (280)
T cd05049 148 LATRNCLVGYDLVVKIGDFGMS 169 (280)
T ss_pred cccceEEEcCCCeEEECCcccc
Confidence 6799999999999999999964
No 275
>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.
Probab=33.20 E-value=99 Score=33.80 Aligned_cols=46 Identities=30% Similarity=0.439 Sum_probs=31.8
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCCC--C-----CCCCCccccHHHHHHh
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRDP--K-----PFPPPMKLCKEMVEAM 719 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~p--~-----pf~~PFrLT~~mv~~m 719 (818)
+|=.++|||++.+|++.=+|||....... . ....|.=+.||+...+
T Consensus 126 rDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 178 (331)
T cd05624 126 RDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAM 178 (331)
T ss_pred ccCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhcc
Confidence 67789999999999999999997532211 0 1123445678877654
No 276
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=33.11 E-value=2e+02 Score=30.91 Aligned_cols=46 Identities=28% Similarity=0.314 Sum_probs=32.1
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCCCC--CCCCCccccHHHHHHh
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK--PFPPPMKLCKEMVEAM 719 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~p~--pf~~PFrLT~~mv~~m 719 (818)
||-+++||+++.+|.+.=+|||....-.+. ....+.-+.||....+
T Consensus 139 ~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~~ 186 (308)
T cd06634 139 RDVKAGNILLSEPGLVKLGDFGSASIMAPANXFVGTPYWMAPEVILAM 186 (308)
T ss_pred CCCCHHhEEECCCCcEEECCcccceeecCcccccCCccccCHHHHhhc
Confidence 788899999999999999999965432221 1223445678876543
No 277
>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of
Probab=33.09 E-value=4.4e+02 Score=29.26 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.9
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|-.++|||++.+|++.=+|||..
T Consensus 125 rDlkp~NIll~~~~~~kl~DfGla 148 (377)
T cd05629 125 RDIKPDNILIDRGGHIKLSDFGLS 148 (377)
T ss_pred cCCCHHHEEECCCCCEEEeecccc
Confidence 677899999999999999999965
No 278
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=33.04 E-value=95 Score=33.17 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 655 ETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 655 ~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
..++..+|.-...-+=.|| ||=.++||+++.+|.+.=+|||..
T Consensus 141 ~~i~~~i~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~DfG~~ 185 (304)
T cd05096 141 LHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMS 185 (304)
T ss_pred HHHHHHHHHHHHHHHHCCccccCcchhheEEcCCccEEECCCccc
Confidence 3444444332222233454 788999999999999999999965
No 279
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=32.84 E-value=80 Score=33.69 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.9
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=+++|||++.+|.+.-+|||...
T Consensus 128 ~dlkp~Nil~~~~~~~kl~dfg~~~ 152 (301)
T cd07873 128 RDLKPQNLLINERGELKLADFGLAR 152 (301)
T ss_pred CCCCHHHEEECCCCcEEECcCcchh
Confidence 7889999999999999999999764
No 280
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=32.60 E-value=64 Score=30.19 Aligned_cols=75 Identities=23% Similarity=0.342 Sum_probs=50.8
Q ss_pred hhHhhhccchhHhhhhccccCCCHHHHHHHHHHhcCC--------CCCCHhhHhhcCCCCCC-------C---HHHHHHH
Q 003462 315 FRFSLMSEKRALTKFLRSVEWSDVQEAKQALELMGRW--------EMIDVCDALELLSPVFE-------S---EEVRAYA 376 (818)
Q Consensus 315 ~R~~l~~~~~aL~k~L~sV~W~~~~e~~~a~~lL~~W--------~~~~~~~aLeLL~~~f~-------~---~~VR~yA 376 (818)
+|-|+..+|..+..||+.-||.+.+++++.+.--.+| ..=-...||+||..--. + ..+...+
T Consensus 6 lk~Yl~~~~~~l~~llr~~N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~i 85 (108)
T PF10366_consen 6 LKCYLETNPSLLGPLLRLPNYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETI 85 (108)
T ss_pred HHHHHHhCHHHHHHHHccCCcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHH
Confidence 3556666899999999988999999998865422332 44457889998763222 1 2355567
Q ss_pred HHHHhcCCchHHH
Q 003462 377 VCILERADDDELQ 389 (818)
Q Consensus 377 v~~L~~~~d~~l~ 389 (818)
|+.|++++.+++-
T Consensus 86 v~yL~~L~~~~~d 98 (108)
T PF10366_consen 86 VQYLQKLGNEDLD 98 (108)
T ss_pred HHHHHhCChhhhH
Confidence 7888887665543
No 281
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=32.51 E-value=4.1e+02 Score=29.66 Aligned_cols=48 Identities=29% Similarity=0.491 Sum_probs=33.5
Q ss_pred hcc--CCCCCCceeEcCCCCEEEEeeccccCCCCC-------CCCCCccccHHHHHH
Q 003462 671 LGI--GDRHLDNLLLRDDGRLFHVDFGYILGRDPK-------PFPPPMKLCKEMVEA 718 (818)
Q Consensus 671 LGI--GDRH~dNIli~~~G~lfHIDFG~ilg~~p~-------pf~~PFrLT~~mv~~ 718 (818)
.|| ||=.++|||++++|++.=+|||........ ....|--+.||++..
T Consensus 161 ~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 217 (370)
T cd05596 161 MGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKS 217 (370)
T ss_pred CCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhcc
Confidence 454 788999999999999999999976432211 112344567887654
No 282
>PRK11768 serine/threonine protein kinase; Provisional
Probab=32.45 E-value=83 Score=34.91 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=22.8
Q ss_pred HHHHhccCCCCCCceeEcCCCCEEEEeeccc
Q 003462 667 ITYILGIGDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 667 ~tYiLGIGDRH~dNIli~~~G~lfHIDFG~i 697 (818)
..+.+-=||=|++|||++ +| +.-|||+.+
T Consensus 194 ~~~~liHgD~h~~NvL~~-d~-~~iIDFDd~ 222 (325)
T PRK11768 194 VRLLRLHGDCHPGNILWR-DG-PHFVDLDDA 222 (325)
T ss_pred CCccceecCCCchhcccc-CC-cEEEeCCCC
Confidence 356777899999999995 44 556999865
No 283
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=32.34 E-value=2.4e+02 Score=30.36 Aligned_cols=45 Identities=27% Similarity=0.352 Sum_probs=31.3
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCCCC--CCCCCccccHHHHHH
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK--PFPPPMKLCKEMVEA 718 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~p~--pf~~PFrLT~~mv~~ 718 (818)
||-+++||+++.+|++.=+|||......+. ....+.=+.||++..
T Consensus 149 ~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~y~aPE~~~~ 195 (317)
T cd06635 149 RDIKAGNILLTEPGQVKLADFGSASIASPANSFVGTPYWMAPEVILA 195 (317)
T ss_pred CCCCcccEEECCCCCEEEecCCCccccCCcccccCCccccChhhhhc
Confidence 788999999999999999999965432221 112233467777643
No 284
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=32.31 E-value=35 Score=36.29 Aligned_cols=125 Identities=21% Similarity=0.313 Sum_probs=66.4
Q ss_pred eeeccccceEEEEEEeCCCCeEEEEEEeC--CCcchhHHHHHHH------HHHHHHHh--hcCCCccccccEEEE-----
Q 003462 542 SIFKSALHPLRLTFRTASGGTCKMIFKKG--DDIRQDQLVVQMV------SLMDRLLK--LENLDLHLTPYNVLA----- 606 (818)
Q Consensus 542 ~v~~S~~~P~~l~f~~~dg~~~~~i~K~g--DDLRqD~lvlQli------~lmd~ll~--~~~ldL~l~~Y~Vlp----- 606 (818)
.|+++..+- .+.....||+. +|+|.- .+-|.....+-++ +++..+.+ ++|+.-...+|-+.-
T Consensus 37 kv~k~~~r~-~ValIei~~~k--yIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~ekk~~~ 113 (229)
T PF06176_consen 37 KVFKNTKRN-YVALIEIDGKK--YILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAAEKKIFR 113 (229)
T ss_pred EeecCCCcc-EEEEEEECCcE--EEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeeeeeeecc
Confidence 455554332 23344456644 688853 5666666555442 44444432 456554444443321
Q ss_pred eeCCC-CeeeeecCccHHHHHhh----hhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccCCCCCCce
Q 003462 607 TGQDE-GLLEFIPSRSLAQILSE----HRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILGIGDRHLDNL 681 (818)
Q Consensus 607 ~~~~~-GlIE~V~s~tl~~I~~~----~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLGIGDRH~dNI 681 (818)
..... =++|+|+...+.++..- ...+.+++.+.+.. + +==||=|++|+
T Consensus 114 ~~~~~~ll~EYIeG~~l~d~~~i~e~~~~ki~~~ikqlH~~--G-------------------------~~HGD~hpgNF 166 (229)
T PF06176_consen 114 YTSSYVLLMEYIEGVELNDIEDIDEDLAEKIVEAIKQLHKH--G-------------------------FYHGDPHPGNF 166 (229)
T ss_pred ceeEEEEEEEEecCeecccchhcCHHHHHHHHHHHHHHHHc--C-------------------------CccCCCCcCcE
Confidence 11222 27899997666543211 12234444433211 1 12389999999
Q ss_pred eEcCCCCEEEEeeccc
Q 003462 682 LLRDDGRLFHVDFGYI 697 (818)
Q Consensus 682 li~~~G~lfHIDFG~i 697 (818)
+++++| +.=|||+..
T Consensus 167 lv~~~~-i~iID~~~k 181 (229)
T PF06176_consen 167 LVSNNG-IRIIDTQGK 181 (229)
T ss_pred EEECCc-EEEEECccc
Confidence 999655 999999654
No 285
>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular
Probab=32.14 E-value=1.1e+02 Score=31.56 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.7
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||-+++|||++.+|++.=+|||..-
T Consensus 118 ~dl~p~nil~~~~~~~kl~dfg~~~ 142 (252)
T cd05084 118 RDLAARNCLVTEKNVLKISDFGMSR 142 (252)
T ss_pred cccchheEEEcCCCcEEECccccCc
Confidence 7889999999999999999999754
No 286
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=32.14 E-value=40 Score=30.96 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.8
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=|++|||++++|.+.=+|||..-
T Consensus 113 ~Dl~~~Nil~~~~~~~~l~Df~~~~ 137 (155)
T cd05120 113 GDLHPGNILVDDGKILGIIDWEYAG 137 (155)
T ss_pred cCCCcceEEEECCcEEEEEeccccc
Confidence 8999999999999999999998653
No 287
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=32.00 E-value=5.4e+02 Score=26.59 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.8
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||-+++|||++.+|++.=+|||..-
T Consensus 130 ~dlkp~nili~~~~~~~l~dfg~~~ 154 (267)
T cd05066 130 RDLAARNILVNSNLVCKVSDFGLSR 154 (267)
T ss_pred hhhchhcEEECCCCeEEeCCCCccc
Confidence 8999999999999999999999654
No 288
>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]
Probab=31.97 E-value=31 Score=41.48 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=24.7
Q ss_pred cCCCCCCceeEc-CCCCEEEEeeccccCC
Q 003462 673 IGDRHLDNLLLR-DDGRLFHVDFGYILGR 700 (818)
Q Consensus 673 IGDRH~dNIli~-~~G~lfHIDFG~ilg~ 700 (818)
.+|-|++|||++ ..|++--+|||+.=+.
T Consensus 438 hRDLkp~NIL~~~~~g~lrltyFG~a~~~ 466 (612)
T KOG0603|consen 438 HRDLKPGNILLDGSAGHLRLTYFGFWSEL 466 (612)
T ss_pred ecCCChhheeecCCCCcEEEEEechhhhC
Confidence 589999999995 8999999999987553
No 289
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=31.66 E-value=73 Score=25.93 Aligned_cols=42 Identities=12% Similarity=0.347 Sum_probs=34.8
Q ss_pred CCCCCCcCCc-hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Q 003462 758 SNIPDIASDP-EKGILKLQEKFRLDLDDEACVHFFQDLINESV 799 (818)
Q Consensus 758 ~~ip~~~~~~-~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~ 799 (818)
+++|.++.+. ..++.++++-..-++|..||+..+-+.|.+.-
T Consensus 3 ~~lp~LtHeeQQ~AvE~Iq~LMaqGmSsgEAI~~VA~~iRe~~ 45 (51)
T PF03701_consen 3 NDLPSLTHEEQQQAVERIQELMAQGMSSGEAIAIVAQEIREEH 45 (51)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 6789888654 45788999988999999999999888887653
No 290
>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha. Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw
Probab=31.40 E-value=1.1e+02 Score=33.50 Aligned_cols=46 Identities=30% Similarity=0.442 Sum_probs=32.1
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCC--CCC-----CCCCCccccHHHHHHh
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGR--DPK-----PFPPPMKLCKEMVEAM 719 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~--~p~-----pf~~PFrLT~~mv~~m 719 (818)
+|=.++|||++.+|++.=+|||..... ... ....|.=+.||++..+
T Consensus 126 rDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~ 178 (332)
T cd05623 126 RDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAM 178 (332)
T ss_pred cCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhcc
Confidence 788899999999999999999975421 111 1123445678887643
No 291
>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an
Probab=31.28 E-value=2.5e+02 Score=29.95 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.6
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|=+++|||++.+|.+-=+|||..-
T Consensus 127 ~dlkp~Nill~~~~~~kl~Dfg~~~ 151 (303)
T cd07869 127 RDLKPQNLLISDTGELKLADFGLAR 151 (303)
T ss_pred CCCCHHHEEECCCCCEEECCCCcce
Confidence 6889999999999999999999753
No 292
>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase. Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ
Probab=30.91 E-value=6.1e+02 Score=26.11 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=31.2
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCCC------CCCCCCccccHHHHH
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRDP------KPFPPPMKLCKEMVE 717 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~p------~pf~~PFrLT~~mv~ 717 (818)
+|-+++||+++++|.+.-+|||....... .....+.=+.||++.
T Consensus 135 ~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~ 184 (272)
T cd06637 135 RDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIA 184 (272)
T ss_pred CCCCHHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhc
Confidence 78899999999999999999997643211 112234456778764
No 293
>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also
Probab=30.87 E-value=3.1e+02 Score=28.59 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
...++..++--...-+-.|+ ||=+++|||++.+|.+.=+|||..
T Consensus 101 ~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~ 146 (284)
T cd07839 101 VKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLA 146 (284)
T ss_pred HHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchh
Confidence 34444444433333344555 888999999999999999999965
No 294
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=30.74 E-value=1.2e+02 Score=31.12 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=23.0
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=+++||+++.+|.+-=+|||...
T Consensus 124 ~dl~p~nili~~~~~~kl~Dfg~~~ 148 (254)
T cd05083 124 RDLAARNILVSEDGVAKVSDFGLAR 148 (254)
T ss_pred cccCcceEEEcCCCcEEECCCccce
Confidence 8999999999999999999999764
No 295
>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members. The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista
Probab=30.52 E-value=38 Score=35.37 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=23.4
Q ss_pred HHHhccCCCCCCceeEcCCCCEEEEeeccc
Q 003462 668 TYILGIGDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 668 tYiLGIGDRH~dNIli~~~G~lfHIDFG~i 697 (818)
.+.|-=||=|++|||++..+-.--|||+..
T Consensus 163 ~~~l~HGD~~~~Nvlv~~~~i~giIDw~~a 192 (235)
T cd05155 163 PPVWFHGDLAPGNLLVQDGRLSAVIDFGCL 192 (235)
T ss_pred CceEEeCCCCCCcEEEECCCEEEEEeCccc
Confidence 455667999999999986543458999975
No 296
>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica
Probab=30.41 E-value=3.6e+02 Score=29.65 Aligned_cols=45 Identities=29% Similarity=0.269 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
...++..++.---.-+-.|| ||=.++|||++.+|.+-=+|||..-
T Consensus 103 ~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~ 149 (364)
T cd05599 103 TRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCT 149 (364)
T ss_pred HHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccce
Confidence 34455444432222233343 7888999999999999999999753
No 297
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=30.36 E-value=3.3e+02 Score=28.47 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCC-CEEEEeeccccCCC--CCCCCCCccccHHHHHH
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDG-RLFHVDFGYILGRD--PKPFPPPMKLCKEMVEA 718 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G-~lfHIDFG~ilg~~--p~pf~~PFrLT~~mv~~ 718 (818)
...++..++--.-.-+-.|+ ||=.++|||++.+| ++.=+|||..-..+ ......+.-+.||+...
T Consensus 111 ~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~y~aPE~~~~ 180 (267)
T PHA03390 111 VKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTPSCYDGTLDYFSPEKIKG 180 (267)
T ss_pred HHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCCccCCCCCcccChhhhcC
Confidence 34444454433333333444 78899999999877 99999999653322 11122333456776643
No 298
>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2. Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve
Probab=29.99 E-value=1.1e+02 Score=32.09 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.1
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|=+++|||++.+|++.=+|||..
T Consensus 133 ~dlkp~Nil~~~~~~~kL~dfG~~ 156 (279)
T cd05109 133 RDLAARNVLVKSPNHVKITDFGLA 156 (279)
T ss_pred cccccceEEEcCCCcEEECCCCce
Confidence 888999999999999999999965
No 299
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=29.40 E-value=1.3e+02 Score=31.20 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.4
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|=.++|||++++|.+.-+|||..-
T Consensus 136 ~dlkp~Nil~~~~~~~kl~Dfg~~~ 160 (272)
T cd05075 136 RDLAARNCMLNENMNVCVADFGLSK 160 (272)
T ss_pred cccchhheEEcCCCCEEECCCCccc
Confidence 6888999999999999999999653
No 300
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=29.34 E-value=1.2e+02 Score=32.81 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.5
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=.++|||++.+|.+.=+|||...
T Consensus 122 ~dlkp~Nil~~~~~~~kL~Dfg~~~ 146 (318)
T cd05582 122 RDLKPENILLDEEGHIKLTDFGLSK 146 (318)
T ss_pred CCCCHHHeEECCCCcEEEeeccCCc
Confidence 7888999999999999999999653
No 301
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=29.21 E-value=1.3e+02 Score=31.39 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|-.++|||++.+|++.=+|||..-
T Consensus 124 ~dlkp~nil~~~~~~~kL~dfg~~~ 148 (269)
T cd05087 124 SDLALRNCLLTADLTVKIGDYGLSH 148 (269)
T ss_pred cccCcceEEEcCCCcEEECCccccc
Confidence 7889999999999999999999653
No 302
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=29.20 E-value=1.7e+02 Score=30.56 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=23.0
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||-+++||+++++|.+.=+|||...
T Consensus 145 ~dl~~~nili~~~~~~~l~dfg~~~ 169 (282)
T cd06636 145 RDIKGQNVLLTENAEVKLVDFGVSA 169 (282)
T ss_pred CCCCHHHEEECCCCCEEEeeCcchh
Confidence 8999999999999999999999754
No 303
>COG0510 ycfN Thiamine kinase and related kinases [Coenzyme transport and metabolism]
Probab=29.13 E-value=43 Score=36.37 Aligned_cols=34 Identities=38% Similarity=0.544 Sum_probs=29.6
Q ss_pred HHhccCCCCCCceeEcCCCCEEEEeeccccCCCC
Q 003462 669 YILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDP 702 (818)
Q Consensus 669 YiLGIGDRH~dNIli~~~G~lfHIDFG~ilg~~p 702 (818)
+++.=||=|++|++.++.|.++=|||-+.--.+|
T Consensus 153 ~v~cH~Dl~~~N~l~t~~~~l~LIDWEyAg~~D~ 186 (269)
T COG0510 153 LVPCHNDLNPGNLLLTDKGGLFLIDWEYAGLNDP 186 (269)
T ss_pred eeeecCCCCccceEEcCCCcEEEEecccCCCccH
Confidence 5677799999999999999999999988866554
No 304
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.09 E-value=73 Score=26.34 Aligned_cols=44 Identities=11% Similarity=0.290 Sum_probs=35.2
Q ss_pred cCCCCCCcCCc-hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Q 003462 757 GSNIPDIASDP-EKGILKLQEKFRLDLDDEACVHFFQDLINESVS 800 (818)
Q Consensus 757 ~~~ip~~~~~~-~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~ 800 (818)
.+++|.++.+. .++|.++++-..-++|..||+..+.+-|.+--.
T Consensus 2 ~~~lp~LtHeqQQ~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk 46 (60)
T COG3140 2 FAGLPSLTHEQQQKAVERIQELMAEGMSSGEAIALVAQELRENHK 46 (60)
T ss_pred CCccccccHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHhc
Confidence 46788888654 458899999999999999999998887776543
No 305
>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2
Probab=28.67 E-value=1e+02 Score=32.24 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=22.6
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=+++||+++.+|.+--+|||..
T Consensus 125 ~dl~p~nil~~~~~~~~l~dfg~~ 148 (285)
T cd07861 125 RDLKPQNLLIDNKGVIKLADFGLA 148 (285)
T ss_pred cCCCHHHEEEcCCCcEEECcccce
Confidence 899999999999999999999965
No 306
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=28.61 E-value=1.1e+02 Score=37.46 Aligned_cols=107 Identities=24% Similarity=0.414 Sum_probs=0.0
Q ss_pred cccccCCCCccccccEEecccccCcCccCceEEEEEeecC---------------------------------CCC---c
Q 003462 74 TRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSC---------------------------------GKD---E 117 (818)
Q Consensus 74 T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~---------------------------------~~~---~ 117 (818)
|+.++-+-+++|+|...|.|. |+..+ ++.+-|||... ++. .
T Consensus 181 tsvk~~TLnPkW~EkF~F~Ie--Dv~tD-qfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tD 257 (1103)
T KOG1328|consen 181 TSVKKKTLNPKWSEKFQFTIE--DVQTD-QFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTD 257 (1103)
T ss_pred cccccccCCcchhhheeeehh--ccccc-eeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccc
Q ss_pred eeEeEEEEee-----------ec----ccccccccceeEEeecCCCCCCCCCCCCCCCCCCCchhhHHHHHHH--Hhhhh
Q 003462 118 RLVGGTTILL-----------FN----SKMQLKTGKQKLRLWPGKEADGSLPTSTPGKVPKNERGELERLEKL--INKYE 180 (818)
Q Consensus 118 ~~vG~~~~~L-----------Fd----~~~~Lr~G~~~L~lWp~~~~d~~~~~~~p~~~~~~~~~~~~rl~~l--~~~~~ 180 (818)
-.+|+.||+| |. .+..=.||..+|++|-.+..++...+ .++..+.+..+|.| +-.|+
T Consensus 258 DFLGciNipl~EiP~~Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~~~a~s------e~~~~~~~~hielL~~f~~~E 331 (1103)
T KOG1328|consen 258 DFLGCINIPLAEIPPDGLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGRAGS------EDETLDVKEHIELLRQFALYE 331 (1103)
T ss_pred ccccccccchhcCCcchHHHHhccCcccccccccceEEEEEEEeeeccccccC------ccchhhHHHHHHHHHHHHHHH
Q ss_pred cccccccch
Q 003462 181 REQIQRVDW 189 (818)
Q Consensus 181 ~g~~~~~~w 189 (818)
-.+..+..|
T Consensus 332 ~~~~ep~s~ 340 (1103)
T KOG1328|consen 332 IRQTEPPSR 340 (1103)
T ss_pred hhccCCCCc
No 307
>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi
Probab=28.47 E-value=6.6e+02 Score=25.73 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=24.6
Q ss_pred hccCCCCCCceeEcCCCCEEEEeecccc
Q 003462 671 LGIGDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 671 LGIGDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+--||=+++||+++.+|.+.=+|||..-
T Consensus 114 ~~h~dl~~~nilv~~~~~~~l~df~~~~ 141 (262)
T cd05572 114 IIYRDLKPENLLLDSNGYVKLVDFGFAK 141 (262)
T ss_pred cccCCCCHHHEEEcCCCCEEEeeCCccc
Confidence 4558999999999999999999999764
No 308
>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins. Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha
Probab=28.45 E-value=1.2e+02 Score=31.06 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=22.0
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|=+++|||++.+|.+-=+|||..
T Consensus 109 ~dlkp~Nil~~~~~~~~l~df~~~ 132 (237)
T cd05576 109 RDLNPNNILLDDRGHIQLTYFSRW 132 (237)
T ss_pred cCCCHHHEEEcCCCCEEEecccch
Confidence 788999999999999999999954
No 309
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=28.43 E-value=1.3e+02 Score=31.67 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.8
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|-.++|||++.+|.+.-+|||..
T Consensus 133 ~dlkp~nili~~~~~~kl~Dfg~~ 156 (279)
T cd05111 133 RNLAARNILLKSDSIVQIADFGVA 156 (279)
T ss_pred cccCcceEEEcCCCcEEEcCCccc
Confidence 677899999999999999999965
No 310
>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I
Probab=28.30 E-value=75 Score=32.83 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=23.0
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||-+++||+++.+|++.-+|||...
T Consensus 137 ~~l~p~ni~~~~~~~~~l~d~~~~~ 161 (275)
T cd06608 137 RDIKGQNILLTKNAEVKLVDFGVSA 161 (275)
T ss_pred CCCCHHHEEEccCCeEEECCCccce
Confidence 8999999999999999999999753
No 311
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=28.29 E-value=6.5e+02 Score=25.65 Aligned_cols=47 Identities=17% Similarity=-0.001 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 653 CLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 653 ~~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
....++..++.-...-+--|+ ||-+++||+++.+|.+.=+|||..-.
T Consensus 103 ~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~ 151 (256)
T cd05039 103 QQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKE 151 (256)
T ss_pred HHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccc
Confidence 344444444433333334454 78899999999999999999997654
No 312
>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase. Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm
Probab=28.25 E-value=4.9e+02 Score=27.27 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=21.4
Q ss_pred CCCCCCceeEcC-CCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRD-DGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~-~G~lfHIDFG~i 697 (818)
||-+++|||++. +|.+-=+|||..
T Consensus 134 ~dl~~~nil~~~~~~~~kl~dfg~~ 158 (295)
T cd07837 134 RDLKPQNLLVDKQKGLLKIADLGLG 158 (295)
T ss_pred cCCChHHEEEecCCCeEEEeecccc
Confidence 788999999997 899999999954
No 313
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=27.88 E-value=7.4e+02 Score=26.11 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=22.6
Q ss_pred cCCCCCCceeEcCCCCEEEEeeccc
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~i 697 (818)
-||-+++|||++++|.+-=+|||..
T Consensus 152 H~dlkp~Nill~~~~~~kl~dfg~~ 176 (295)
T cd05097 152 HRDLATRNCLVGNHYTIKIADFGMS 176 (295)
T ss_pred ccccChhhEEEcCCCcEEecccccc
Confidence 4799999999999999999999965
No 314
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=27.68 E-value=3.8e+02 Score=27.55 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.6
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=+++||+++++|.+.=+|||..-
T Consensus 130 ~di~p~nil~~~~~~~~l~dfg~~~ 154 (267)
T cd06628 130 RDIKGANILVDNKGGIKISDFGISK 154 (267)
T ss_pred ccCCHHHEEEcCCCCEEecccCCCc
Confidence 7899999999999999999999653
No 315
>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes. ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo
Probab=27.63 E-value=50 Score=34.15 Aligned_cols=33 Identities=12% Similarity=0.193 Sum_probs=26.9
Q ss_pred HHhccCCCCCCceeEcC-CCCEEEEeeccccCCC
Q 003462 669 YILGIGDRHLDNLLLRD-DGRLFHVDFGYILGRD 701 (818)
Q Consensus 669 YiLGIGDRH~dNIli~~-~G~lfHIDFG~ilg~~ 701 (818)
.+|.=||=|++|||++. +|.+.=|||-+.--.+
T Consensus 170 ~~l~H~Dl~~~Nil~~~~~~~~~lIDwe~a~~~~ 203 (235)
T cd05157 170 IVFCHNDLLSGNIIYNEEKNSVKFIDYEYAGYNY 203 (235)
T ss_pred EEEEcCCCCcCcEEEeCCCCCEEEEEcccCCcCc
Confidence 56777999999999997 6889999997664333
No 316
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=27.54 E-value=6.9e+02 Score=26.72 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=24.1
Q ss_pred Hhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 670 ILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 670 iLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
=.|| +|=.++|||++.+|.+.=+|||..-
T Consensus 127 ~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~ 157 (316)
T cd05108 127 ERRLVHRDLAARNVLVKTPQHVKITDFGLAK 157 (316)
T ss_pred hcCeeccccchhheEecCCCcEEEccccccc
Confidence 3454 6888999999999999999999763
No 317
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=27.39 E-value=1.6e+02 Score=30.80 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=22.0
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||-.++||+++++|.+.=+|||..
T Consensus 148 ~dlkp~Nil~~~~~~~~L~dfg~~ 171 (283)
T cd05048 148 RDLAARNCLVGEGLTVKISDFGLS 171 (283)
T ss_pred cccccceEEEcCCCcEEECCCcce
Confidence 699999999999999999999965
No 318
>PRK10345 hypothetical protein; Provisional
Probab=27.17 E-value=1.4e+02 Score=31.09 Aligned_cols=23 Identities=13% Similarity=-0.152 Sum_probs=18.4
Q ss_pred cCCCCCCceeEcCC----CCEEEEeec
Q 003462 673 IGDRHLDNLLLRDD----GRLFHVDFG 695 (818)
Q Consensus 673 IGDRH~dNIli~~~----G~lfHIDFG 695 (818)
..|=.++|||+++. ++++=|||+
T Consensus 128 hrDlKp~NILl~~~~~~~~~~~LiDg~ 154 (210)
T PRK10345 128 TMELKPQNILCQRISESEVIPVVCDNI 154 (210)
T ss_pred ecCCCHHHEEEeccCCCCCcEEEEECC
Confidence 57889999999842 379999953
No 319
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=27.13 E-value=1.7e+02 Score=30.51 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.7
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||-.++||+++.+|.+.=+|||..-
T Consensus 133 ~dl~p~nil~~~~~~~~l~dfg~~~ 157 (284)
T cd05038 133 RDLAARNILVESEDLVKISDFGLAK 157 (284)
T ss_pred CCCCHHhEEEcCCCCEEEccccccc
Confidence 8999999999999999999999653
No 320
>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g
Probab=27.07 E-value=7.5e+02 Score=25.92 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.0
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|=.++|||++.+|.+.=+|||...
T Consensus 121 ~dlkp~Nili~~~~~~~l~dfg~~~ 145 (280)
T cd05608 121 RDLKPENVLLDNDGNVRISDLGLAV 145 (280)
T ss_pred CCCCHHHEEECCCCCEEEeeCccce
Confidence 6777899999999999999999753
No 321
>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a
Probab=26.99 E-value=6.9e+02 Score=25.49 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=22.2
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||-+++||+++.+|.+.=+|||..
T Consensus 130 ~dl~p~nil~~~~~~~~l~d~~~~ 153 (267)
T cd08224 130 RDIKPANVFITATGVVKLGDLGLG 153 (267)
T ss_pred CCcChhhEEECCCCcEEEecccee
Confidence 899999999999999999999965
No 322
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=26.93 E-value=7.2e+02 Score=25.66 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.5
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||-+++||+++++|.+.=+|||...
T Consensus 126 ~dl~p~Nill~~~~~~~L~dfg~~~ 150 (262)
T cd05071 126 RDLRAANILVGENLVCKVADFGLAR 150 (262)
T ss_pred cccCcccEEEcCCCcEEeccCCcee
Confidence 7888999999999999999999763
No 323
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=26.91 E-value=1.2e+02 Score=37.00 Aligned_cols=116 Identities=23% Similarity=0.372 Sum_probs=60.6
Q ss_pred CCCeEEE-EEEeCCCcchhHHHHHHHHHHHHHHhhcC-CCccccccEEEEeeCCCC-eeeeec-CccHHHHHhhhhhHHH
Q 003462 559 SGGTCKM-IFKKGDDIRQDQLVVQMVSLMDRLLKLEN-LDLHLTPYNVLATGQDEG-LLEFIP-SRSLAQILSEHRSIIS 634 (818)
Q Consensus 559 dg~~~~~-i~K~gDDLRqD~lvlQli~lmd~ll~~~~-ldL~l~~Y~Vlp~~~~~G-lIE~V~-s~tl~~I~~~~~~l~~ 634 (818)
++..|.+ .+|.| ++=||--|.++..- .+|+.-.+ -..-...|.+.-|....= ++|++. .. +..|+..
T Consensus 392 ~~e~yAIK~LKK~-~Il~~d~Ve~~~~E-krI~~la~~HPFL~~L~~~fQT~~~l~fvmey~~Ggd-m~~~~~~------ 462 (694)
T KOG0694|consen 392 TNEYYAIKVLKKG-DILQRDEVESLMCE-KRIFELANRHPFLVNLFSCFQTKEHLFFVMEYVAGGD-LMHHIHT------ 462 (694)
T ss_pred CCcEEEEEEeecc-ceeccccHHHHHHH-HHHHHHhccCCeEeecccccccCCeEEEEEEecCCCc-EEEEEec------
Confidence 3445544 34554 44444334444322 22332222 234445677777766553 367776 33 3333211
Q ss_pred HHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHh--cc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 635 YLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYIL--GI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 635 ~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiL--GI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+. .++++-.|..-|- .+.+.|+= || .|--+||||+|.+||+=-+|||..
T Consensus 463 ----------~~---F~e~rarfyaAev-~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlc 515 (694)
T KOG0694|consen 463 ----------DV---FSEPRARFYAAEV-VLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLC 515 (694)
T ss_pred ----------cc---ccHHHHHHHHHHH-HHHHHHHHhcCceeeecchhheEEcccCcEEecccccc
Confidence 11 1344555543322 12223332 22 488899999999999999999976
No 324
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=26.90 E-value=83 Score=33.70 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 655 ETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 655 ~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
..++..++...-..+--|+ ||=++.||+++++|++.=+|||..-
T Consensus 119 ~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~ 164 (292)
T cd06657 119 AAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCA 164 (292)
T ss_pred HHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccce
Confidence 3444444433333333444 9999999999999999999999753
No 325
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=26.78 E-value=1.4e+02 Score=33.47 Aligned_cols=47 Identities=28% Similarity=0.439 Sum_probs=32.9
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCCC-------CCCCCCccccHHHHHHhC
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRDP-------KPFPPPMKLCKEMVEAMG 720 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~p-------~pf~~PFrLT~~mv~~mG 720 (818)
+|=.++||||+++|++.=+|||....... .....|-=+.||++...+
T Consensus 166 rDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~ 219 (371)
T cd05622 166 RDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQG 219 (371)
T ss_pred CCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccC
Confidence 78889999999999999999997643211 111234456788876543
No 326
>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They
Probab=26.57 E-value=1.1e+02 Score=31.82 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=31.2
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCCCC--C----CCCCccccHHHHHH
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK--P----FPPPMKLCKEMVEA 718 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~p~--p----f~~PFrLT~~mv~~ 718 (818)
||-+++||+++++|.+-=+|||..-.-.+. . ...+.-..||+...
T Consensus 122 ~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~ 172 (283)
T cd05118 122 RDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLG 172 (283)
T ss_pred cCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhc
Confidence 899999999999999999999976432211 1 12233366777653
No 327
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=26.37 E-value=1.8e+02 Score=29.81 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.7
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=.++|||++++|.+.=+|||...
T Consensus 124 ~dl~p~nili~~~~~~~l~dfg~~~ 148 (255)
T cd08219 124 RDIKSKNIFLTQNGKVKLGDFGSAR 148 (255)
T ss_pred CCCCcceEEECCCCcEEEcccCcce
Confidence 7889999999999999999999753
No 328
>PRK05114 hypothetical protein; Provisional
Probab=26.31 E-value=97 Score=25.91 Aligned_cols=44 Identities=9% Similarity=0.329 Sum_probs=36.5
Q ss_pred CCCCCCcCCc-hHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Q 003462 758 SNIPDIASDP-EKGILKLQEKFRLDLDDEACVHFFQDLINESVSA 801 (818)
Q Consensus 758 ~~ip~~~~~~-~~~i~~l~~~l~l~lsdeeA~~~f~~lI~~s~~s 801 (818)
+++|.++... ..++.++++-..-++|..||+..+-+.|.+....
T Consensus 3 ~~lp~LtHeeQQ~AVErIq~LMaqGmSsgEAI~~VA~eiRe~~~~ 47 (59)
T PRK05114 3 AGLPSLTHEQQQKAVERIQELMAQGMSSGEAIALVAEELRANHQG 47 (59)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhc
Confidence 4889888654 4578999999999999999999999988886543
No 329
>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity. Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....
Probab=26.20 E-value=34 Score=35.21 Aligned_cols=44 Identities=23% Similarity=0.459 Sum_probs=30.9
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc--CCCCCC----CCCCccccHHHHH
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL--GRDPKP----FPPPMKLCKEMVE 717 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il--g~~p~p----f~~PFrLT~~mv~ 717 (818)
+|=.++|||++++|++.-+|||... ...... ...+.=..||++.
T Consensus 122 ~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~ 171 (260)
T PF00069_consen 122 RDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQ 171 (260)
T ss_dssp SSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6778999999999999999999864 222111 1234446677765
No 330
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=25.99 E-value=7e+02 Score=25.25 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=23.6
Q ss_pred cCCCCCCceeEcCCCCEEEEeecccc
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~il 698 (818)
-||-.++|||++.+|++-=+|||..-
T Consensus 116 h~di~p~nili~~~~~~~l~d~g~~~ 141 (251)
T cd05041 116 HRDLAARNCLVGENNVLKISDFGMSR 141 (251)
T ss_pred hhhcCcceEEEcCCCcEEEeeccccc
Confidence 48999999999999999999999764
No 331
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=25.76 E-value=6.6e+02 Score=27.22 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=22.3
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||-.++|||++.+|++.=+|||..
T Consensus 128 ~dlkp~Nil~~~~~~~kl~Dfg~~ 151 (331)
T cd06649 128 RDVKPSNILVNSRGEIKLCDFGVS 151 (331)
T ss_pred CCCChhhEEEcCCCcEEEccCccc
Confidence 799999999999999999999965
No 332
>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=25.40 E-value=1.8e+02 Score=30.32 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.5
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|-.++|||++.+|++.=+|||...
T Consensus 123 ~dikp~nil~~~~~~~~l~Dfg~~~ 147 (268)
T cd05086 123 SDLALRNCFLTSDLTVKVGDYGIGP 147 (268)
T ss_pred cCCccceEEEcCCccEEeccccccc
Confidence 7888999999999999999999754
No 333
>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta. Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in
Probab=25.37 E-value=1.4e+02 Score=32.42 Aligned_cols=25 Identities=44% Similarity=0.658 Sum_probs=22.6
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|-.++|||++++|.+--+|||..-
T Consensus 120 rdikp~Nil~~~~~~~kl~Dfg~~~ 144 (316)
T cd05619 120 RDLKLDNILLDTDGHIKIADFGMCK 144 (316)
T ss_pred CCCCHHHEEECCCCCEEEccCCcce
Confidence 7889999999999999999999653
No 334
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=25.36 E-value=8.3e+02 Score=25.87 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=23.3
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
||-.++|||++.+|.+.=+|||....
T Consensus 140 ~dLkp~Nill~~~~~~kl~dfg~~~~ 165 (296)
T cd06654 140 RDIKSDNILLGMDGSVKLTDFGFCAQ 165 (296)
T ss_pred CCCCHHHEEEcCCCCEEECccccchh
Confidence 89999999999999999999997543
No 335
>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.
Probab=25.26 E-value=51 Score=33.89 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=43.9
Q ss_pred ccccEEEEeeCCCCeeeeec--CccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHH-HHhcc--
Q 003462 599 LTPYNVLATGQDEGLLEFIP--SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVIT-YILGI-- 673 (818)
Q Consensus 599 l~~Y~Vlp~~~~~GlIE~V~--s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~t-YiLGI-- 673 (818)
+...+++..+.+.=++|+|+ ..++..+....-+ +. +..+-|. .+....... .-.||
T Consensus 70 v~vP~p~~~~~~~ivME~I~~~G~~~~~l~~~~~~---------~~---------~~~~~~~-~il~~~~~~~~~~givH 130 (188)
T PF01163_consen 70 VPVPKPYDYNRNVIVMEYIGEDGVPLPRLKDVDLS---------PE---------EPKELLE-EILEEIIKMLHKAGIVH 130 (188)
T ss_dssp -SS--EEEEETTEEEEE--EETTEEGGCHHHCGGG---------GS---------THHHHHH-HHHHHHHHHHHCTTEEE
T ss_pred ccCCcEEEEeCCEEEEEecCCCccchhhHHhcccc---------ch---------hHHHHHH-HHHHHHHHHHHhcCcee
Confidence 44557778888888899999 6666554432100 00 0111111 222211111 24455
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCC
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRD 701 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~ 701 (818)
||-+..|||++++ +++=||||-.....
T Consensus 131 GDLs~~NIlv~~~-~~~iIDf~qav~~~ 157 (188)
T PF01163_consen 131 GDLSEYNILVDDG-KVYIIDFGQAVDSS 157 (188)
T ss_dssp SS-STTSEEEETT-CEEE--GTTEEETT
T ss_pred cCCChhhEEeecc-eEEEEecCcceecC
Confidence 9999999999976 99999999776654
No 336
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.92 E-value=6.2e+02 Score=32.93 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHH----hcCCchHHHHHHHHHHH
Q 003462 366 VFESEEVRAYAVCIL----ERADDDELQCYLLQLVQ 397 (818)
Q Consensus 366 ~f~~~~VR~yAv~~L----~~~~d~~l~~yL~QLVQ 397 (818)
...+++|-.+|...| +.++.+.|.-||++|++
T Consensus 442 ~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 442 STQNVRVQAHAAAALVNFSEECDKSILEPYLDGLME 477 (1075)
T ss_pred ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 445667777777666 45777888888888888
No 337
>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio
Probab=24.57 E-value=3.9e+02 Score=27.76 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=23.6
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
||-+++||+++.+|.+.=+|||....
T Consensus 124 ~dl~p~nil~~~~~~~~l~dfg~~~~ 149 (286)
T cd07847 124 RDVKPENILITKQGQIKLCDFGFARI 149 (286)
T ss_pred cCCChhhEEEcCCCcEEECcccccee
Confidence 89999999999999999999997643
No 338
>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou
Probab=24.53 E-value=1e+02 Score=32.30 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.7
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
+|-.++|||++.+|.+.=+|||+.-
T Consensus 132 ~dikp~Nili~~~~~~kl~dfg~~~ 156 (288)
T cd07863 132 RDLKPENILVTSGGQVKLADFGLAR 156 (288)
T ss_pred CCCCHHHEEECCCCCEEECccCccc
Confidence 7889999999999999999999653
No 339
>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do
Probab=24.17 E-value=7.8e+02 Score=25.14 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=22.6
Q ss_pred cCCCCCCceeEcCCCCEEEEeecccc
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~il 698 (818)
=||=+++||+++.+|.+.=+|||..-
T Consensus 120 H~dl~p~nil~~~~~~~~l~dfg~~~ 145 (260)
T cd05611 120 HRDIKPENLLIDQTGHLKLTDFGLSR 145 (260)
T ss_pred cCCCCHHHeEECCCCcEEEeecccce
Confidence 37888999999999999999999653
No 340
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=24.05 E-value=48 Score=39.42 Aligned_cols=34 Identities=38% Similarity=0.667 Sum_probs=26.6
Q ss_pred HHHHHhccC----CCCCCceeEcCCCCEEEEeecc--ccC
Q 003462 666 VITYILGIG----DRHLDNLLLRDDGRLFHVDFGY--ILG 699 (818)
Q Consensus 666 v~tYiLGIG----DRH~dNIli~~~G~lfHIDFG~--ilg 699 (818)
.+-|+=+.| |--++|||++++||+--.|||- +|+
T Consensus 186 AleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~ 225 (604)
T KOG0592|consen 186 ALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILS 225 (604)
T ss_pred HHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCC
Confidence 345665555 6678999999999999999994 455
No 341
>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=24.05 E-value=8.1e+02 Score=25.32 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.0
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
||-.++|||++++|.+--+|||..-+
T Consensus 136 ~dikp~nili~~~~~~kl~dfgl~~~ 161 (270)
T cd05047 136 RDLAARNILVGENYVAKIADFGLSRG 161 (270)
T ss_pred cccccceEEEcCCCeEEECCCCCccc
Confidence 68889999999999999999997644
No 342
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=23.87 E-value=1e+02 Score=34.15 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.8
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||=.++|||++.+|.+.-+|||..-
T Consensus 150 ~Dlkp~NIll~~~~~~kL~DfG~a~ 174 (364)
T cd07875 150 RDLKPSNIVVKSDCTLKILDFGLAR 174 (364)
T ss_pred CCCCHHHEEECCCCcEEEEeCCCcc
Confidence 7889999999999999999999764
No 343
>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast
Probab=23.78 E-value=7.6e+02 Score=24.84 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=23.9
Q ss_pred cCCCCCCceeEcCCCCEEEEeeccccC
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
-||=+++||+++.+|.+.=+|||+...
T Consensus 122 H~dl~p~ni~i~~~~~~~l~d~~~~~~ 148 (254)
T cd06627 122 HRDIKAANILTTKDGVVKLADFGVATK 148 (254)
T ss_pred cCCCCHHHEEECCCCCEEEecccccee
Confidence 478899999999999999999997754
No 344
>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops
Probab=23.68 E-value=7.7e+02 Score=24.91 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.5
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||-.++||+++++|.+-=+|||...
T Consensus 126 ~dl~~~ni~~~~~~~~kl~d~~~~~ 150 (258)
T cd06632 126 RDIKGANILVDTNGVVKLADFGMAK 150 (258)
T ss_pred CCCCHHHEEECCCCCEEEccCccce
Confidence 7888999999999999999999654
No 345
>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=23.60 E-value=1.9e+02 Score=30.00 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=22.2
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||-+++||+++.+|.+.=+|||..
T Consensus 124 ~dl~p~nili~~~~~~kl~d~g~~ 147 (256)
T cd05113 124 RDLAARNCLVDDQGCVKVSDFGLS 147 (256)
T ss_pred cccCcceEEEcCCCCEEECCCccc
Confidence 888999999999999999999965
No 346
>PHA03212 serine/threonine kinase US3; Provisional
Probab=23.56 E-value=1.3e+02 Score=34.03 Aligned_cols=44 Identities=18% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
...++..++.--..-+-.|| +|=.++|||++.+|.+.=+|||..
T Consensus 184 ~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a 229 (391)
T PHA03212 184 ILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAA 229 (391)
T ss_pred HHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcc
Confidence 34444444432222233455 688899999999999999999965
No 347
>TIGR02721 ycfN_thiK thiamine kinase. Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.
Probab=23.47 E-value=59 Score=34.35 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=26.1
Q ss_pred HhccCCCCCCceeEcCCCCEEEEeeccccCCCC
Q 003462 670 ILGIGDRHLDNLLLRDDGRLFHVDFGYILGRDP 702 (818)
Q Consensus 670 iLGIGDRH~dNIli~~~G~lfHIDFG~ilg~~p 702 (818)
+|.=||=|++|||++++| +.=|||.+.--.+|
T Consensus 147 ~l~H~Dl~~~Nil~~~~~-~~lIDwE~a~~gdp 178 (256)
T TIGR02721 147 APLHMDVHAYNLVVTPQG-LKLIDWEYASDGDI 178 (256)
T ss_pred eeecCCCCcCcEEEeCCC-CEEEeccccCcCCH
Confidence 456699999999999887 78999988755554
No 348
>PF01633 Choline_kinase: Choline/ethanolamine kinase; InterPro: IPR002573 Choline kinase, (ATP:choline phosphotransferase, 2.7.1.32 from EC) belongs to the choline/ethanolamine kinase family. Ethanolamine and choline are major membrane phospholipids, in the form of glycerophosphoethanolamine and glycerophosphocholine. Ethanolamine is also a component of the glycosylphosphatidylinositol (GPI) anchor, which is necessary for cell-surface protein attachment []. The de novo synthesis of these phospholipids begins with the creation of phosphoethanolamine and phosphocholine by ethanolamine and choline kinases in the first step of the CDP-ethanolamine pathway [, ]. There are two putative choline/ethanolamine kinases (C/EKs) in the Trypanosoma brucei genome. Ethanolamine kinase has no choline kinase activity [] and its activity is inhibited by ADP []. Inositol supplementation represses ethanolamine kinase, decreasing the incorporation of ethanolamine into the CDP-ethanolamine pathway and into phosphatidylethanolamine and phosphatidylcholine []. ; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 3C5I_A 2IG7_A 3LQ3_A 3FEG_A 2QG7_E 3FI8_A 1NW1_A 3MES_A 3G15_A 2CKP_B ....
Probab=23.31 E-value=51 Score=33.76 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=20.9
Q ss_pred HHhccCCCCCCceeE-cCCCCEEEEeeccc
Q 003462 669 YILGIGDRHLDNLLL-RDDGRLFHVDFGYI 697 (818)
Q Consensus 669 YiLGIGDRH~dNIli-~~~G~lfHIDFG~i 697 (818)
-++.=+|=|++|||+ +++|++.=|||-|.
T Consensus 143 ~v~cHnDl~~~Nil~~~~~~~~~lIDfEya 172 (211)
T PF01633_consen 143 LVFCHNDLNPGNILINNKDGEVKLIDFEYA 172 (211)
T ss_dssp EEEE-S--SGGGEEETSSSSCEEE--GTT-
T ss_pred ceEeeccCccccEEeccCCCeEEEecHHHH
Confidence 578889999999999 68999999999775
No 349
>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=22.70 E-value=2.2e+02 Score=30.05 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.9
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=+++|||++.+|.+.=+|||..
T Consensus 143 ~dikp~nili~~~~~~~L~Dfg~~ 166 (288)
T cd05061 143 RDLAARNCMVAHDFTVKIGDFGMT 166 (288)
T ss_pred CCCChheEEEcCCCcEEECcCCcc
Confidence 788899999999999999999964
No 350
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=22.61 E-value=1.1e+02 Score=26.26 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 003462 368 ESEEVRAYAVCILERADDDELQCYLLQLVQALR 400 (818)
Q Consensus 368 ~~~~VR~yAv~~L~~~~d~~l~~yL~QLVQaLk 400 (818)
+++.||..|+.+|.+..+.+. ++.|+++|+
T Consensus 12 ~~~~vr~~a~~~L~~~~~~~~---~~~L~~~l~ 41 (88)
T PF13646_consen 12 PDPQVRAEAARALGELGDPEA---IPALIELLK 41 (88)
T ss_dssp SSHHHHHHHHHHHHCCTHHHH---HHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCCHhH---HHHHHHHHc
Confidence 578999999999999988866 455556664
No 351
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=22.60 E-value=70 Score=36.95 Aligned_cols=88 Identities=25% Similarity=0.439 Sum_probs=54.3
Q ss_pred CccccccEEEEeeCCCCe-eeeecCccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHH--Hhc
Q 003462 596 DLHLTPYNVLATGQDEGL-LEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITY--ILG 672 (818)
Q Consensus 596 dL~l~~Y~Vlp~~~~~Gl-IE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tY--iLG 672 (818)
.+-.+.|..+-+..-.++ ||+.+.--|..+. +..++ ..|. ..+.+=|+.- .-+.+-| .||
T Consensus 137 PFlPTLYa~fet~~~~cl~meyCpGGdL~~Lr-----------qkQp~--~~fs--e~~aRFYaAE--vl~ALEYLHmlG 199 (459)
T KOG0610|consen 137 PFLPTLYASFETDKYSCLVMEYCPGGDLHSLR-----------QKQPG--KRFS--ESAARFYAAE--VLLALEYLHMLG 199 (459)
T ss_pred CccchhhheeeccceeEEEEecCCCccHHHHH-----------hhCCC--Cccc--hhhHHHHHHH--HHHHHHHHHhhc
Confidence 456788888888877666 7888754444332 22222 2221 1222222222 2233444 466
Q ss_pred c--CCCCCCceeEcCCCCEEEEeeccccCC
Q 003462 673 I--GDRHLDNLLLRDDGRLFHVDFGYILGR 700 (818)
Q Consensus 673 I--GDRH~dNIli~~~G~lfHIDFG~ilg~ 700 (818)
| .|--++||||.++||+.-.||-..+--
T Consensus 200 ivYRDLKPENILvredGHIMLsDFDLS~~~ 229 (459)
T KOG0610|consen 200 IVYRDLKPENILVREDGHIMLSDFDLSLRC 229 (459)
T ss_pred eeeccCCcceeEEecCCcEEeeeccccccC
Confidence 6 488899999999999999999877654
No 352
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.52 E-value=84 Score=35.18 Aligned_cols=77 Identities=22% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCCCceEEEEEEEeCCcccccceecccccCCCCccccccEEecccccCcCccCceEEEEEeecCCCCceeEeEEEEeee
Q 003462 50 ERRPELYVECALYIDGAPFGLPMRTRLESMGPMYCWNEPITLSTKYRDLTAHSQLALTVWDVSCGKDERLVGGTTILLF 128 (818)
Q Consensus 50 ~~~~~l~V~~~l~~~~~~l~~p~~T~~~~~~~~~~Wnewl~fpI~~~dLPr~a~L~~ti~~~~~~~~~~~vG~~~~~LF 128 (818)
+..+|+||+.-+-.+..--. --.|+.+--+..+.+|+-..+.|.-.|| ..-++++++||....+...++|+.-..+.
T Consensus 251 ng~sDpyvS~~l~pdv~~~f-kkKt~~~K~t~~p~fd~~~~~~i~pgdL-a~~kv~lsvgd~~~G~s~d~~GG~~~g~~ 327 (362)
T KOG1013|consen 251 NGYSDPYVSQRLSPDVGKKF-KKKTQQKKKTLNPEFDEEFFYDIGPGDL-AYKKVALSVGDYDIGKSNDSIGGSMLGGY 327 (362)
T ss_pred CCCCCccceeecCCCcchhh-cccCcchhccCCccccccccccCCccch-hcceEEEeecccCCCcCccCCCccccccc
Confidence 34567777765552221111 1122222223346789999999999999 89999999999765545566777655544
No 353
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=22.43 E-value=98 Score=28.43 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHh
Q 003462 369 SEEVRAYAVCILERA---DDDELQCYLLQLVQALR 400 (818)
Q Consensus 369 ~~~VR~yAv~~L~~~---~d~~l~~yL~QLVQaLk 400 (818)
|.+||-||.+.|-.+ ..++++.|+.++.-+|-
T Consensus 40 d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~ 74 (97)
T PF12755_consen 40 DSRVRYYACEALYNISKVARGEILPYFNEIFDALC 74 (97)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999543 34667778888777654
No 354
>TIGR01767 MTRK 5-methylthioribose kinase. This enzyme is involved in the methionine salvage pathway in certain bacteria.
Probab=22.35 E-value=3.4e+02 Score=31.13 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=22.2
Q ss_pred HhccCCCCCCceeEcCCCCEEEEeecccc
Q 003462 670 ILGIGDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 670 iLGIGDRH~dNIli~~~G~lfHIDFG~il 698 (818)
-|=-||-|.+|||+++++ .+=||+-+.+
T Consensus 193 ~llHGDl~~gNi~~~~~~-~~~iD~e~~~ 220 (370)
T TIGR01767 193 TLLHGDLHSGSIFVSEHE-TKVIDPEFAF 220 (370)
T ss_pred eeeeccCCcccEEEcCCC-CEEEcCcccc
Confidence 345699999999998765 7789997543
No 355
>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]
Probab=22.05 E-value=81 Score=36.46 Aligned_cols=30 Identities=43% Similarity=0.637 Sum_probs=23.3
Q ss_pred CCCCCCceeEc--CCC--CEEEEeeccccCCCCC
Q 003462 674 GDRHLDNLLLR--DDG--RLFHVDFGYILGRDPK 703 (818)
Q Consensus 674 GDRH~dNIli~--~~G--~lfHIDFG~ilg~~p~ 703 (818)
.|-..|||||. +|| .++-.|||++|..+..
T Consensus 365 RDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~h 398 (598)
T KOG4158|consen 365 RDLKSDNILLELDDDEIPQLVVADFGCCLADDNH 398 (598)
T ss_pred hcccccceEEEecCCCCcEEEEcccceeeecccc
Confidence 35567999997 455 6889999999986643
No 356
>cd05152 MPH2' Macrolide 2'-Phosphotransferase (MPH2'). MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported
Probab=22.03 E-value=64 Score=35.04 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=23.6
Q ss_pred HHhccCCCCCCceeEcCCCCEE-EEeecccc
Q 003462 669 YILGIGDRHLDNLLLRDDGRLF-HVDFGYIL 698 (818)
Q Consensus 669 YiLGIGDRH~dNIli~~~G~lf-HIDFG~il 698 (818)
..|==||=|++|||++++|++. =|||+..-
T Consensus 185 ~~lvHGD~~~~Nilv~~~~~~~gviDWe~a~ 215 (276)
T cd05152 185 TVLVHGDLHPGHILIDEDARVTGLIDWTEAK 215 (276)
T ss_pred CeeEeCCCCCCcEEEeCCCCEEEEECcHhcc
Confidence 3455599999999999768764 89999753
No 357
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=22.03 E-value=2.1e+02 Score=30.24 Aligned_cols=25 Identities=24% Similarity=0.117 Sum_probs=22.4
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||-.++|||++.+|.+.=+|||..-
T Consensus 147 ~dlkp~Nil~~~~~~~~l~dfg~a~ 171 (291)
T cd05094 147 RDLATRNCLVGANLLVKIGDFGMSR 171 (291)
T ss_pred cccCcceEEEccCCcEEECCCCccc
Confidence 6888999999999999999999763
No 358
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=21.98 E-value=9.1e+02 Score=25.15 Aligned_cols=24 Identities=25% Similarity=0.142 Sum_probs=22.0
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||-.++|||++++|.+.-+|||..
T Consensus 146 ~dlkp~nil~~~~~~~kL~dfg~~ 169 (280)
T cd05092 146 RDLATRNCLVGQGLVVKIGDFGMS 169 (280)
T ss_pred ccccHhhEEEcCCCCEEECCCCce
Confidence 688899999999999999999965
No 359
>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.96 E-value=1.9e+02 Score=30.28 Aligned_cols=126 Identities=18% Similarity=0.220 Sum_probs=69.6
Q ss_pred cccccEEEEeeCCCCe--eeeecCccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc--c
Q 003462 598 HLTPYNVLATGQDEGL--LEFIPSRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILG--I 673 (818)
Q Consensus 598 ~l~~Y~Vlp~~~~~Gl--IE~V~s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLG--I 673 (818)
-+.+.-|..+.+..|+ +|+|+...+.+.+.... .+.+ +-..-+----+--| =
T Consensus 60 GV~~P~v~dvD~~~~~I~me~I~G~~lkd~l~~~~--~~~~----------------------r~vG~~vg~lH~~givH 115 (204)
T COG3642 60 GVPVPIVYDVDPDNGLIVMEYIEGELLKDALEEAR--PDLL----------------------REVGRLVGKLHKAGIVH 115 (204)
T ss_pred CCCCCeEEEEcCCCCEEEEEEeCChhHHHHHHhcc--hHHH----------------------HHHHHHHHHHHhcCeec
Confidence 4567778888888866 69999877876664330 0111 11111100111112 2
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccC-CCCCCCCCCccccHHHHHHhCCCCccccchHHHHHHHHHHHHHcCchHHHHHH
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILG-RDPKPFPPPMKLCKEMVEAMGGAESQYYTRFKSYCCEAYNILRKSSNLILNLF 752 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg-~~p~pf~~PFrLT~~mv~~mGg~~s~~~~~F~~~c~~a~~~LRk~~~~il~l~ 752 (818)
||--..||++..++ ++-||||.--- +......|-.. -+..++.++..+ ++.+...+..+|..-..-+..++..+
T Consensus 116 GDLTtsNiIl~~~~-i~~IDfGLg~~s~~~Ed~aVDl~---Vleral~sth~~-~e~l~~~f~~gY~~~~~~~~~Vl~~~ 190 (204)
T COG3642 116 GDLTTSNIILSGGR-IYFIDFGLGEFSDEVEDKAVDLH---VLERALESTHEK-AEELFAAFLEGYREEFGEAKEVLERL 190 (204)
T ss_pred CCCccceEEEeCCc-EEEEECCcccccccHHhhhchHH---HHHHHHHhcccc-HHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 88899999998665 99999995432 22112222111 123445555444 56777777788855554454444444
No 360
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=21.95 E-value=1.4e+02 Score=31.53 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=22.8
Q ss_pred CCCCCCceeEcCCCCEEEEeecccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
||-+++||+++.+|.+.=+|||...
T Consensus 134 ~dlkp~Nili~~~~~~kl~dfg~~~ 158 (292)
T cd06644 134 RDLKAGNVLLTLDGDIKLADFGVSA 158 (292)
T ss_pred cCCCcceEEEcCCCCEEEccCccce
Confidence 8999999999999999999999653
No 361
>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH). The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio
Probab=21.94 E-value=70 Score=33.37 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=22.9
Q ss_pred HhccCCCCCCceeEcCCCCEEEEeeccc
Q 003462 670 ILGIGDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 670 iLGIGDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|-=||=|++|||++.++..-=|||+..
T Consensus 164 ~l~HgD~~~~Nil~~~~~~~~iIDwe~a 191 (244)
T cd05150 164 VVTHGDACLPNIIVDPGKFSGFIDLGRL 191 (244)
T ss_pred EEECCCCCCccEEEeCCcEEEEEEcccc
Confidence 3444999999999998766678999866
No 362
>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla
Probab=21.85 E-value=47 Score=35.09 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 653 CLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 653 ~~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
....++..+|.--..-+-.|| +|=.++|||++.+|.+.-+|||..
T Consensus 111 ~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~ 157 (290)
T cd07862 111 TIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 157 (290)
T ss_pred HHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccce
Confidence 344555554433222233454 788999999999999999999975
No 363
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=21.77 E-value=70 Score=33.96 Aligned_cols=43 Identities=30% Similarity=0.493 Sum_probs=33.1
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc--c--------CCCCCCCCCCccccHHHH
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI--L--------GRDPKPFPPPMKLCKEMV 716 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i--l--------g~~p~pf~~PFrLT~~mv 716 (818)
.|=-+.||||+.+|++=-.|||.. | ..+-+|.-+|=|+.++.-
T Consensus 173 RDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n 225 (282)
T KOG0984|consen 173 RDVKPSNILINYDGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELN 225 (282)
T ss_pred ccCCcceEEEccCCcEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccC
Confidence 466899999999999999999853 2 234578878878776653
No 364
>PHA03209 serine/threonine kinase US3; Provisional
Probab=21.69 E-value=1.8e+02 Score=32.17 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccc
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
...++..+|.--..-+-.|| +|=.++|||++.+|.+.=+|||..
T Consensus 159 ~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a 204 (357)
T PHA03209 159 ALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAA 204 (357)
T ss_pred HHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccc
Confidence 34455544432222223343 788899999999999999999965
No 365
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.66 E-value=59 Score=37.54 Aligned_cols=24 Identities=38% Similarity=0.663 Sum_probs=22.0
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
.|--+||+|++.+||+=-.|||..
T Consensus 474 RDLKLDNvmLd~eGHiKi~DFGmc 497 (683)
T KOG0696|consen 474 RDLKLDNVMLDSEGHIKIADFGMC 497 (683)
T ss_pred eeccccceEeccCCceEeeecccc
Confidence 578899999999999999999965
No 366
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=21.53 E-value=2.4e+02 Score=34.00 Aligned_cols=83 Identities=16% Similarity=0.263 Sum_probs=43.3
Q ss_pred eeeeecCccHHHHHhhhh---hHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHH--hcc--CCCCCCceeEcC
Q 003462 613 LLEFIPSRSLAQILSEHR---SIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYI--LGI--GDRHLDNLLLRD 685 (818)
Q Consensus 613 lIE~V~s~tl~~I~~~~~---~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYi--LGI--GDRH~dNIli~~ 685 (818)
+.|+.+..+|.+++.... .+.+|+....................+...++.. +.|+ .|| +|=.++|||++.
T Consensus 213 V~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~a--L~yLH~~gIiHRDLKP~NILl~~ 290 (566)
T PLN03225 213 VWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFA--LDGLHSTGIVHRDVKPQNIIFSE 290 (566)
T ss_pred EEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHH--HHHHHHCCEEeCcCCHHHEEEeC
Confidence 457777778888876532 2334443211110000000011122333332222 2233 343 577899999995
Q ss_pred -CCCEEEEeeccc
Q 003462 686 -DGRLFHVDFGYI 697 (818)
Q Consensus 686 -~G~lfHIDFG~i 697 (818)
+|.+-=+|||..
T Consensus 291 ~~~~~KL~DFGlA 303 (566)
T PLN03225 291 GSGSFKIIDLGAA 303 (566)
T ss_pred CCCcEEEEeCCCc
Confidence 799999999975
No 367
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=21.49 E-value=2.4e+02 Score=29.89 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=22.0
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=-++|||++.+|++.=+|||..
T Consensus 154 ~dlkp~Nili~~~~~~~l~dfg~~ 177 (296)
T cd05095 154 RDLATRNCLVGKNYTIKIADFGMS 177 (296)
T ss_pred ccCChheEEEcCCCCEEeccCccc
Confidence 788899999999999999999974
No 368
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=21.36 E-value=58 Score=34.27 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.8
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||-+++||+++++|.+.-+|||..
T Consensus 125 ~dl~p~Nil~~~~~~~~l~dfg~~ 148 (277)
T cd06640 125 RDIKAANVLLSEQGDVKLADFGVA 148 (277)
T ss_pred cCCChhhEEEcCCCCEEEcccccc
Confidence 899999999999999999999976
No 369
>PHA03207 serine/threonine kinase US3; Provisional
Probab=21.32 E-value=1.2e+02 Score=34.11 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+|=+++|||++.+|.+.=+|||..
T Consensus 209 rDlkp~Nill~~~~~~~l~DfG~a 232 (392)
T PHA03207 209 RDVKTENIFLDEPENAVLGDFGAA 232 (392)
T ss_pred cCCCHHHEEEcCCCCEEEccCccc
Confidence 788899999999999999999965
No 370
>TIGR02906 spore_CotS spore coat protein, CotS family. Members of this family include the spore coat proteins CotS and YtaA from Bacillus subtilis and, from other endospore-forming bacteria, homologs that are more closely related to these two than to the spore coat proteins YutH and YsxE. The CotS family is more broadly distributed than YutH or YsxE, but still is not universal among spore-formers.
Probab=21.16 E-value=69 Score=34.57 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=24.4
Q ss_pred HHhccCCCCCCceeEcCCCCEEEEeeccc
Q 003462 669 YILGIGDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 669 YiLGIGDRH~dNIli~~~G~lfHIDFG~i 697 (818)
+.+.=||=|.+|||++. |.+.-|||+.+
T Consensus 187 ~~liHgD~~~~Nil~~~-~~i~lIDfd~~ 214 (313)
T TIGR02906 187 RGFCHQDYAYHNILLKD-NEVYVIDFDYC 214 (313)
T ss_pred CceEcCCCCcccEEEeC-CcEEEEECccc
Confidence 56678999999999998 78999999865
No 371
>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes
Probab=21.10 E-value=1.5e+02 Score=31.19 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 653 CLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 653 ~~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
....++..++.-...-+-.|| +|=.++|||++.+|.+-=+|||...
T Consensus 101 ~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~ 148 (287)
T cd07848 101 KVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFAR 148 (287)
T ss_pred HHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcc
Confidence 344555555433222233454 6778999999999999999999764
No 372
>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=21.07 E-value=8.9e+02 Score=24.68 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||=.++|||++.+|++.=+|||..
T Consensus 119 ~di~p~nili~~~~~~kl~df~~~ 142 (257)
T cd05060 119 RDLAARNVLLVNRHQAKISDFGMS 142 (257)
T ss_pred cCcccceEEEcCCCcEEecccccc
Confidence 788999999999999999999964
No 373
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=21.02 E-value=1.5e+02 Score=37.01 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=58.7
Q ss_pred chhHhhhhccccCCCHHHHHHH-HHHhcCCCCCCHhhHhhcCC---C--CCCCHHHHHHHHHHHhcCCchHHHHHHHH-H
Q 003462 323 KRALTKFLRSVEWSDVQEAKQA-LELMGRWEMIDVCDALELLS---P--VFESEEVRAYAVCILERADDDELQCYLLQ-L 395 (818)
Q Consensus 323 ~~aL~k~L~sV~W~~~~e~~~a-~~lL~~W~~~~~~~aLeLL~---~--~f~~~~VR~yAv~~L~~~~d~~l~~yL~Q-L 395 (818)
+.-++.+++.|. ++..|++.. |-.|...+...|+.||.... . .-+|+.+|.+|++-|-.+.+.+|..++.- +
T Consensus 54 ssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~i 132 (757)
T COG5096 54 SSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPI 132 (757)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 456778888888 555666654 45666778899988876654 2 33678999999999999999997766555 5
Q ss_pred HHHHhccc
Q 003462 396 VQALRFER 403 (818)
Q Consensus 396 VQaLkyE~ 403 (818)
.|.|.+..
T Consensus 133 k~~l~d~~ 140 (757)
T COG5096 133 KKLLTDPH 140 (757)
T ss_pred HHHccCCc
Confidence 56666553
No 374
>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP. PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].
Probab=21.01 E-value=2.4e+02 Score=29.36 Aligned_cols=75 Identities=25% Similarity=0.366 Sum_probs=48.4
Q ss_pred cccEEEEeeCCCCe-eeeec------CccHHHHHhhhhhHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc
Q 003462 600 TPYNVLATGQDEGL-LEFIP------SRSLAQILSEHRSIISYLQKFHPDEHGPFGITATCLETFIKSCAGYSVITYILG 672 (818)
Q Consensus 600 ~~Y~Vlp~~~~~Gl-IE~V~------s~tl~~I~~~~~~l~~~l~~~~~~~~~~~~i~~~~~~~F~~S~Agysv~tYiLG 672 (818)
+.|..+.|+...|+ +|.|. +.||.+.+++.+ + ++ ...++.+.|.+-+....|++
T Consensus 81 r~~G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~-~---------~~-----~~~~~L~~f~~~l~~~~Iv~---- 141 (199)
T PF10707_consen 81 RFYGFVETNLGLGLVVELIRDADGNISPTLEDYLKEGG-L---------TE-----ELRQALDEFKRYLLDHHIVI---- 141 (199)
T ss_pred cEeEEEecCCceEEEEEEEECCCCCcCccHHHHHHcCC-c---------cH-----HHHHHHHHHHHHHHHcCCee----
Confidence 56999999999888 56664 245555543211 1 10 01346777777776655554
Q ss_pred cCCCCCCceeEcC--CC--CEEEEee
Q 003462 673 IGDRHLDNLLLRD--DG--RLFHVDF 694 (818)
Q Consensus 673 IGDRH~dNIli~~--~G--~lfHIDF 694 (818)
.|=+++||++.. +| +++=||-
T Consensus 142 -~dl~~~NIv~~~~~~~~~~lvlIDG 166 (199)
T PF10707_consen 142 -RDLNPHNIVVQRRDSGEFRLVLIDG 166 (199)
T ss_pred -cCCCcccEEEEecCCCceEEEEEeC
Confidence 588999999983 44 4888884
No 375
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=20.97 E-value=49 Score=36.54 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=22.1
Q ss_pred CCCCCCceeEcCCCCEEEEeeccc
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYI 697 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~i 697 (818)
||-+++||||+.+|.+.-+|||..
T Consensus 192 rDlkp~NIll~~~~~~kL~DfG~~ 215 (353)
T PLN00034 192 RDIKPSNLLINSAKNVKIADFGVS 215 (353)
T ss_pred cCCCHHHEEEcCCCCEEEcccccc
Confidence 788999999999999999999964
No 376
>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription
Probab=20.96 E-value=1.4e+02 Score=33.26 Aligned_cols=46 Identities=24% Similarity=0.205 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 653 CLETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 653 ~~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
....++..++.---.-+-.|| ||=.++|||++.+|.+--+|||..-
T Consensus 104 ~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~ 151 (372)
T cd07853 104 HVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLAR 151 (372)
T ss_pred HHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEecccccee
Confidence 344555554432222223343 6777889999999999999999653
No 377
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=20.89 E-value=2.8e+02 Score=33.41 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.3
Q ss_pred CCCCCCceeEcC----CCCEEEEeeccccC
Q 003462 674 GDRHLDNLLLRD----DGRLFHVDFGYILG 699 (818)
Q Consensus 674 GDRH~dNIli~~----~G~lfHIDFG~ilg 699 (818)
+|=|++||++++ +++++--|||..-.
T Consensus 325 aDPHPGNilv~~~~~~~~~ivllDhGl~~~ 354 (538)
T KOG1235|consen 325 ADPHPGNILVRPNPEGDEEIVLLDHGLYAV 354 (538)
T ss_pred CCCCCCcEEEecCCCCCccEEEEccccccc
Confidence 699999999993 78999999997643
No 378
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=20.76 E-value=6.9e+02 Score=30.28 Aligned_cols=108 Identities=19% Similarity=0.206 Sum_probs=75.6
Q ss_pred cCCCHHHHHHHHHHhcCCCCCCHhhHhhcCCCCC------CCHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHhccc
Q 003462 334 EWSDVQEAKQALELMGRWEMIDVCDALELLSPVF------ESEEVRAYAVCILER----ADDDELQCYLLQLVQALRFER 403 (818)
Q Consensus 334 ~W~~~~e~~~a~~lL~~W~~~~~~~aLeLL~~~f------~~~~VR~yAv~~L~~----~~d~~l~~yL~QLVQaLkyE~ 403 (818)
.|.....+-|.+..|..-+|...+..+.=+-|.- +++.||+-|.++|.+ .++.++..|+|-|++++--=.
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc
Confidence 6888877777776666666666665555554432 369999999999966 467889999999999986422
Q ss_pred -c-----------------chh--hHHHHHHHHhhcC-----chhhhHHHhhhhhhccCchhh
Q 003462 404 -S-----------------DKS--RLSQFLVQRSSHN-----IELASFLRWYVSVEFHDPVHA 441 (818)
Q Consensus 404 -~-----------------~~s--~L~~fLi~ra~~n-----~~i~~~l~W~L~~e~~~~~~~ 441 (818)
+ ... +|.-=+++|++.. .+-+-..+|++-.+.+|+.-.
T Consensus 347 ~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~l 409 (569)
T KOG1242|consen 347 CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDL 409 (569)
T ss_pred cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHH
Confidence 1 011 2333455665543 367888999999999887743
No 379
>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N. Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved
Probab=20.74 E-value=1.3e+02 Score=32.76 Aligned_cols=28 Identities=43% Similarity=0.522 Sum_probs=24.0
Q ss_pred hcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 671 LGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 671 LGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
.|| +|=.++|||++++|.+.=+|||..-
T Consensus 120 ~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~ 149 (324)
T cd05589 120 NKIVYRDLKLDNLLLDTEGFVKIADFGLCK 149 (324)
T ss_pred CCeEecCCCHHHeEECCCCcEEeCcccCCc
Confidence 455 7888999999999999999999653
No 380
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=20.72 E-value=60 Score=34.66 Aligned_cols=44 Identities=25% Similarity=0.429 Sum_probs=29.8
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccCCCCC---CCCCCccccHHHHH
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILGRDPK---PFPPPMKLCKEMVE 717 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg~~p~---pf~~PFrLT~~mv~ 717 (818)
||=.++|||++.+|.+.-+|||..-..... ....|-=+.||+..
T Consensus 125 ~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~ 171 (291)
T cd05612 125 RDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQ 171 (291)
T ss_pred cCCCHHHeEECCCCCEEEEecCcchhccCCcccccCChhhcCHHHHc
Confidence 678899999999999999999975422111 11223335677654
No 381
>cd00180 PKc Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which
Probab=20.68 E-value=7.3e+02 Score=23.49 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=24.1
Q ss_pred hccCCCCCCceeEcC-CCCEEEEeecccc
Q 003462 671 LGIGDRHLDNLLLRD-DGRLFHVDFGYIL 698 (818)
Q Consensus 671 LGIGDRH~dNIli~~-~G~lfHIDFG~il 698 (818)
+--||=+++||+++. +|++.=+|||..-
T Consensus 113 ~~H~dl~~~ni~~~~~~~~~~l~d~~~~~ 141 (215)
T cd00180 113 IIHRDLKPENILLDSDNGKVKLADFGLSK 141 (215)
T ss_pred eeccCCCHhhEEEeCCCCcEEEecCCceE
Confidence 335799999999998 9999999999764
No 382
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=20.57 E-value=1.5e+02 Score=32.41 Aligned_cols=46 Identities=22% Similarity=0.185 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
...++..++.---.-+-.|| +|=+++|||++.+|.+-=+|||....
T Consensus 120 ~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~ 167 (343)
T cd07878 120 VQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQ 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCcccee
Confidence 34444444432222233444 78889999999999999999997653
No 383
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=20.55 E-value=4.8e+02 Score=28.58 Aligned_cols=49 Identities=22% Similarity=0.198 Sum_probs=32.6
Q ss_pred HHhcc--CCCCCCceeEcCCCCEEEEeeccccCCCCC---CCCCCccccHHHHH
Q 003462 669 YILGI--GDRHLDNLLLRDDGRLFHVDFGYILGRDPK---PFPPPMKLCKEMVE 717 (818)
Q Consensus 669 YiLGI--GDRH~dNIli~~~G~lfHIDFG~ilg~~p~---pf~~PFrLT~~mv~ 717 (818)
+-.|| +|=+++||+++++|.+.=+|||........ ....+.-..||...
T Consensus 137 H~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~ 190 (345)
T cd07877 137 HSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIML 190 (345)
T ss_pred HHCCeeecCCChHHEEEcCCCCEEEecccccccccccccccccCCCccCHHHHh
Confidence 33454 688899999999999999999976543211 11233345677653
No 384
>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain. Phosphotransferases. Serine or threonine-specific kinase subfamily.
Probab=20.49 E-value=8.2e+02 Score=24.02 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.2
Q ss_pred cCCCCCCceeEcCCCCEEEEeeccccCC
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYILGR 700 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~ilg~ 700 (818)
-||=+++||+++.+|.+.=+|||...-.
T Consensus 110 h~~i~~~ni~~~~~~~~~l~d~~~~~~~ 137 (244)
T smart00220 110 HRDLKPENILLDEDGHVKLADFGLARQL 137 (244)
T ss_pred cCCcCHHHeEECCCCcEEEccccceeee
Confidence 4888999999999999999999976543
No 385
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=20.31 E-value=1e+03 Score=24.99 Aligned_cols=45 Identities=18% Similarity=0.073 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhcc--CCCCCCceeEcCCCCEEEEeecccc
Q 003462 654 LETFIKSCAGYSVITYILGI--GDRHLDNLLLRDDGRLFHVDFGYIL 698 (818)
Q Consensus 654 ~~~F~~S~Agysv~tYiLGI--GDRH~dNIli~~~G~lfHIDFG~il 698 (818)
...++..++.--..-+-.|| +|=+++|||++++|.+-=+|||...
T Consensus 104 ~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~ 150 (285)
T cd05632 104 ALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAV 150 (285)
T ss_pred HHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcce
Confidence 34444444432222234455 7889999999999999999999664
No 386
>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1. Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.
Probab=20.25 E-value=1e+03 Score=25.06 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCCCCCceeEcCCCCEEEEeeccccC
Q 003462 674 GDRHLDNLLLRDDGRLFHVDFGYILG 699 (818)
Q Consensus 674 GDRH~dNIli~~~G~lfHIDFG~ilg 699 (818)
||-.++|||++.+|.+-=+|||...+
T Consensus 143 ~dlkp~Nill~~~~~~kl~dfg~~~~ 168 (297)
T cd05089 143 RDLAARNVLVGENLASKIADFGLSRG 168 (297)
T ss_pred CcCCcceEEECCCCeEEECCcCCCcc
Confidence 78899999999999999999997654
No 387
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=20.19 E-value=60 Score=35.48 Aligned_cols=46 Identities=26% Similarity=0.426 Sum_probs=31.2
Q ss_pred cCCCCCCceeEcCCCCEEEEeeccccCCCCCC---CCCCccccHHHHHH
Q 003462 673 IGDRHLDNLLLRDDGRLFHVDFGYILGRDPKP---FPPPMKLCKEMVEA 718 (818)
Q Consensus 673 IGDRH~dNIli~~~G~lfHIDFG~ilg~~p~p---f~~PFrLT~~mv~~ 718 (818)
-||=.++||||+.+|++.=+|||..-...... ...|.=+.||++..
T Consensus 141 H~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~ 189 (329)
T PTZ00263 141 YRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQS 189 (329)
T ss_pred ecCCCHHHEEECCCCCEEEeeccCceEcCCCcceecCChhhcCHHHHcC
Confidence 47888999999999999999999764322111 12333456776543
Done!