Query 003463
Match_columns 818
No_of_seqs 685 out of 3490
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 23:54:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003463.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003463hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4660 Protein Mei2, essentia 100.0 6E-75 1.3E-79 639.9 26.5 518 90-797 2-524 (549)
2 PF04059 RRM_2: RNA recognitio 100.0 2.5E-46 5.5E-51 336.9 10.5 97 654-750 1-97 (97)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.4E-32 9.6E-37 300.2 25.3 241 74-314 3-351 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 9.2E-31 2E-35 307.8 24.5 265 76-340 2-311 (562)
5 KOG0117 Heterogeneous nuclear 100.0 1E-29 2.3E-34 274.2 27.1 250 58-316 68-335 (506)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.9E-29 4E-34 296.8 25.8 245 74-319 88-371 (562)
7 TIGR01648 hnRNP-R-Q heterogene 100.0 4.6E-29 1E-33 288.5 22.8 235 71-314 55-309 (578)
8 KOG0145 RNA-binding protein EL 100.0 3.3E-29 7.1E-34 253.9 14.6 213 149-387 38-268 (360)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.6E-27 1.4E-31 259.0 33.1 159 151-313 2-172 (352)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.5E-28 1.6E-32 278.0 25.3 262 75-340 3-420 (481)
11 KOG0145 RNA-binding protein EL 100.0 7.3E-29 1.6E-33 251.4 13.8 246 50-312 37-358 (360)
12 KOG0148 Apoptosis-promoting RN 99.9 1.8E-26 3.8E-31 236.0 20.0 213 75-314 7-240 (321)
13 TIGR01659 sex-lethal sex-letha 99.9 1.6E-26 3.5E-31 255.1 20.3 163 148-314 103-277 (346)
14 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 4.6E-26 1E-30 263.1 24.2 162 151-312 274-480 (481)
15 TIGR01622 SF-CC1 splicing fact 99.9 1.3E-25 2.8E-30 257.5 24.7 238 74-311 89-447 (457)
16 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.4E-25 5.2E-30 258.6 23.1 238 74-311 175-501 (509)
17 TIGR01645 half-pint poly-U bin 99.9 2.4E-24 5.3E-29 249.7 19.4 163 151-313 106-285 (612)
18 KOG0144 RNA-binding protein CU 99.9 9.7E-24 2.1E-28 227.2 22.2 163 151-316 33-210 (510)
19 KOG0127 Nucleolar protein fibr 99.9 3E-23 6.5E-28 228.4 19.4 240 75-314 6-380 (678)
20 KOG0144 RNA-binding protein CU 99.9 1.1E-23 2.4E-28 226.8 12.6 241 74-314 34-506 (510)
21 TIGR01622 SF-CC1 splicing fact 99.9 8.1E-23 1.8E-27 234.5 18.6 163 148-311 85-265 (457)
22 TIGR01645 half-pint poly-U bin 99.9 1E-21 2.2E-26 228.1 24.7 153 73-225 106-282 (612)
23 TIGR01648 hnRNP-R-Q heterogene 99.9 3.9E-22 8.4E-27 231.2 19.0 178 151-338 57-257 (578)
24 KOG0123 Polyadenylate-binding 99.9 7.7E-22 1.7E-26 219.2 19.8 229 76-315 3-249 (369)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.9E-21 4.2E-26 226.0 19.3 163 148-312 171-375 (509)
26 KOG0117 Heterogeneous nuclear 99.9 2E-21 4.4E-26 210.4 16.3 180 151-340 82-285 (506)
27 KOG0131 Splicing factor 3b, su 99.8 5.6E-21 1.2E-25 186.3 12.2 163 150-315 7-180 (203)
28 KOG0109 RNA-binding protein LA 99.8 9.2E-21 2E-25 195.9 10.0 148 153-312 3-150 (346)
29 KOG0127 Nucleolar protein fibr 99.8 1.4E-19 3.1E-24 199.7 15.3 161 153-313 6-197 (678)
30 KOG0123 Polyadenylate-binding 99.8 2.3E-19 5.1E-24 199.5 15.2 237 77-316 79-353 (369)
31 KOG0110 RNA-binding protein (R 99.8 2.3E-19 4.9E-24 204.1 13.9 161 154-314 517-695 (725)
32 TIGR01659 sex-lethal sex-letha 99.8 2E-18 4.2E-23 191.0 14.9 154 74-227 107-275 (346)
33 KOG0124 Polypyrimidine tract-b 99.8 3.1E-18 6.7E-23 181.0 11.1 157 152-310 113-288 (544)
34 KOG0148 Apoptosis-promoting RN 99.7 1E-17 2.2E-22 172.1 11.7 161 149-339 3-189 (321)
35 KOG0147 Transcriptional coacti 99.7 1.6E-17 3.5E-22 184.9 13.8 237 74-310 179-526 (549)
36 KOG4206 Spliceosomal protein s 99.7 1.5E-16 3.2E-21 161.1 15.9 162 149-310 6-220 (221)
37 KOG0146 RNA-binding protein ET 99.7 1.3E-17 2.9E-22 170.5 8.0 167 151-317 18-370 (371)
38 KOG4212 RNA-binding protein hn 99.7 1.8E-14 4E-19 155.8 30.1 159 152-310 44-292 (608)
39 KOG0124 Polypyrimidine tract-b 99.7 4.9E-16 1.1E-20 164.5 14.6 151 73-223 112-286 (544)
40 KOG1190 Polypyrimidine tract-b 99.6 2E-15 4.4E-20 162.5 16.0 237 74-313 28-374 (492)
41 KOG0147 Transcriptional coacti 99.6 3.1E-16 6.7E-21 174.8 5.0 162 148-310 175-356 (549)
42 KOG4205 RNA-binding protein mu 99.6 1.9E-15 4.2E-20 163.4 9.6 162 151-314 5-178 (311)
43 KOG0105 Alternative splicing f 99.6 1.3E-14 2.7E-19 142.1 13.0 149 150-300 4-176 (241)
44 KOG0110 RNA-binding protein (R 99.5 4.8E-14 1E-18 161.1 15.0 191 149-340 382-639 (725)
45 KOG1190 Polypyrimidine tract-b 99.5 6.5E-13 1.4E-17 143.4 17.5 160 152-311 297-490 (492)
46 KOG0109 RNA-binding protein LA 99.5 5.6E-14 1.2E-18 146.1 8.6 147 74-229 2-152 (346)
47 KOG0106 Alternative splicing f 99.4 8.2E-14 1.8E-18 142.6 6.5 150 153-308 2-167 (216)
48 KOG1457 RNA binding protein (c 99.4 5.8E-13 1.3E-17 134.0 11.7 150 151-300 33-274 (284)
49 KOG1456 Heterogeneous nuclear 99.4 5.8E-12 1.3E-16 134.6 17.9 231 75-311 32-362 (494)
50 PLN03134 glycine-rich RNA-bind 99.4 8.9E-13 1.9E-17 128.8 10.4 78 236-313 33-115 (144)
51 KOG4212 RNA-binding protein hn 99.4 1.2E-11 2.7E-16 134.2 18.7 70 238-309 537-608 (608)
52 PLN03134 glycine-rich RNA-bind 99.4 1.7E-12 3.8E-17 126.8 10.9 80 149-228 31-115 (144)
53 KOG0131 Splicing factor 3b, su 99.3 1.5E-12 3.2E-17 127.8 6.6 155 75-229 10-179 (203)
54 KOG1548 Transcription elongati 99.3 4E-11 8.6E-16 127.8 16.4 164 150-313 132-353 (382)
55 KOG4205 RNA-binding protein mu 99.3 7.8E-12 1.7E-16 135.5 10.3 190 74-264 6-214 (311)
56 KOG4211 Splicing factor hnRNP- 99.3 2.7E-11 5.7E-16 134.3 13.3 156 152-310 10-180 (510)
57 PF00076 RRM_1: RNA recognitio 99.3 8.7E-12 1.9E-16 104.9 6.6 66 240-305 1-70 (70)
58 KOG0107 Alternative splicing f 99.3 8.3E-12 1.8E-16 122.0 7.3 77 237-313 10-86 (195)
59 KOG0120 Splicing factor U2AF, 99.3 6.7E-11 1.4E-15 134.2 15.4 236 75-312 176-492 (500)
60 KOG1365 RNA-binding protein Fu 99.2 3.8E-11 8.2E-16 128.8 12.0 235 77-313 63-363 (508)
61 PF00076 RRM_1: RNA recognitio 99.2 1.6E-11 3.5E-16 103.3 7.4 66 155-220 1-70 (70)
62 KOG4211 Splicing factor hnRNP- 99.2 7.8E-11 1.7E-15 130.6 13.5 230 75-306 11-352 (510)
63 KOG0107 Alternative splicing f 99.2 3.4E-11 7.3E-16 117.7 6.2 77 152-228 10-86 (195)
64 COG0724 RNA-binding proteins ( 99.2 1.8E-10 3.8E-15 119.8 12.1 119 152-270 115-258 (306)
65 KOG0114 Predicted RNA-binding 99.1 3.3E-10 7.2E-15 101.9 10.3 81 236-316 17-99 (124)
66 KOG0121 Nuclear cap-binding pr 99.1 6.8E-11 1.5E-15 110.1 6.1 75 150-224 34-113 (153)
67 KOG0122 Translation initiation 99.1 1.2E-10 2.5E-15 119.3 8.3 77 236-312 188-269 (270)
68 KOG0125 Ataxin 2-binding prote 99.1 1.4E-10 3.1E-15 122.8 9.0 99 210-312 73-174 (376)
69 KOG1456 Heterogeneous nuclear 99.1 6.2E-10 1.4E-14 119.3 13.8 172 143-315 22-202 (494)
70 KOG4660 Protein Mei2, essentia 99.1 7.4E-11 1.6E-15 132.6 7.0 162 149-313 72-251 (549)
71 PLN03120 nucleic acid binding 99.1 2.6E-10 5.6E-15 120.0 10.0 74 237-311 4-79 (260)
72 KOG0121 Nuclear cap-binding pr 99.1 1.4E-10 3.1E-15 108.0 6.3 76 236-311 35-115 (153)
73 KOG0114 Predicted RNA-binding 99.1 3.4E-10 7.4E-15 101.9 8.4 80 149-228 15-96 (124)
74 smart00362 RRM_2 RNA recogniti 99.1 5.6E-10 1.2E-14 92.6 8.7 69 239-307 1-72 (72)
75 PF14259 RRM_6: RNA recognitio 99.1 3.2E-10 7E-15 96.2 7.3 66 240-305 1-70 (70)
76 KOG0125 Ataxin 2-binding prote 99.1 2.9E-10 6.3E-15 120.5 8.2 79 150-228 94-175 (376)
77 PLN03120 nucleic acid binding 99.1 4.7E-10 1E-14 118.0 9.6 75 152-227 4-80 (260)
78 KOG0122 Translation initiation 99.1 4.8E-10 1E-14 114.8 9.2 79 149-227 186-269 (270)
79 PF14259 RRM_6: RNA recognitio 99.0 4.7E-10 1E-14 95.2 7.3 66 155-220 1-70 (70)
80 PLN03213 repressor of silencin 99.0 4.2E-10 9.1E-15 123.9 8.4 88 235-327 8-98 (759)
81 PF13893 RRM_5: RNA recognitio 99.0 7.4E-10 1.6E-14 90.3 7.9 56 254-309 1-56 (56)
82 KOG0105 Alternative splicing f 99.0 5.9E-10 1.3E-14 109.7 7.7 77 236-312 5-83 (241)
83 KOG0149 Predicted RNA-binding 99.0 6.6E-10 1.4E-14 113.5 7.3 76 149-225 9-89 (247)
84 smart00362 RRM_2 RNA recogniti 99.0 1.9E-09 4.1E-14 89.4 7.9 69 154-222 1-72 (72)
85 KOG4207 Predicted splicing fac 99.0 6.4E-10 1.4E-14 111.2 5.5 76 237-312 13-93 (256)
86 KOG4207 Predicted splicing fac 99.0 9.8E-10 2.1E-14 109.9 6.6 79 148-226 9-92 (256)
87 KOG0113 U1 small nuclear ribon 98.9 2.9E-09 6.4E-14 111.8 10.1 93 222-314 86-183 (335)
88 cd00590 RRM RRM (RNA recogniti 98.9 4.8E-09 1E-13 87.4 9.1 70 239-308 1-74 (74)
89 KOG0113 U1 small nuclear ribon 98.9 2.3E-09 5.1E-14 112.5 8.3 79 147-225 96-179 (335)
90 smart00360 RRM RNA recognition 98.9 4.3E-09 9.3E-14 86.9 7.8 66 242-307 1-71 (71)
91 PLN03121 nucleic acid binding 98.9 4.6E-09 9.9E-14 109.1 9.5 73 237-310 5-79 (243)
92 KOG0111 Cyclophilin-type pepti 98.9 1.1E-09 2.3E-14 110.4 4.2 81 236-316 9-94 (298)
93 PLN03213 repressor of silencin 98.9 4E-09 8.8E-14 116.3 8.7 116 150-268 8-134 (759)
94 KOG0111 Cyclophilin-type pepti 98.9 1.6E-09 3.4E-14 109.1 4.0 80 151-230 9-93 (298)
95 PLN03121 nucleic acid binding 98.9 5.8E-09 1.3E-13 108.3 8.2 73 152-225 5-79 (243)
96 KOG0130 RNA-binding protein RB 98.8 3.7E-09 8E-14 99.4 6.0 78 235-312 70-152 (170)
97 cd00590 RRM RRM (RNA recogniti 98.8 1.2E-08 2.5E-13 85.1 7.9 70 154-223 1-74 (74)
98 smart00360 RRM RNA recognition 98.8 8.5E-09 1.8E-13 85.0 7.0 66 157-222 1-71 (71)
99 PF13893 RRM_5: RNA recognitio 98.8 7.8E-09 1.7E-13 84.3 6.1 56 169-224 1-56 (56)
100 COG0724 RNA-binding proteins ( 98.8 2.6E-08 5.5E-13 103.5 11.1 75 237-311 115-194 (306)
101 KOG0149 Predicted RNA-binding 98.8 1E-08 2.2E-13 105.0 6.5 78 235-313 10-92 (247)
102 KOG0126 Predicted RNA-binding 98.8 1.1E-09 2.3E-14 107.8 -0.7 75 236-310 34-113 (219)
103 KOG0112 Large RNA-binding prot 98.7 6.6E-09 1.4E-13 122.1 4.6 159 149-314 369-533 (975)
104 KOG0108 mRNA cleavage and poly 98.7 2E-08 4.4E-13 113.6 8.1 78 238-315 19-101 (435)
105 KOG0129 Predicted RNA-binding 98.7 9.7E-08 2.1E-12 107.2 13.0 141 150-293 257-432 (520)
106 KOG0108 mRNA cleavage and poly 98.7 1.9E-08 4.1E-13 113.8 6.8 76 153-228 19-99 (435)
107 KOG4206 Spliceosomal protein s 98.7 3.7E-08 8.1E-13 100.6 7.4 75 239-313 11-91 (221)
108 KOG0130 RNA-binding protein RB 98.7 2.5E-08 5.4E-13 93.9 5.2 77 151-227 71-152 (170)
109 KOG0146 RNA-binding protein ET 98.6 4.1E-08 8.8E-13 101.6 6.9 97 216-316 2-105 (371)
110 smart00361 RRM_1 RNA recogniti 98.6 7.8E-08 1.7E-12 82.3 7.1 57 251-307 2-70 (70)
111 KOG0126 Predicted RNA-binding 98.6 4.8E-09 1.1E-13 103.2 -0.8 75 151-225 34-113 (219)
112 KOG0120 Splicing factor U2AF, 98.6 1.3E-07 2.7E-12 107.9 8.5 161 151-313 174-370 (500)
113 KOG0132 RNA polymerase II C-te 98.6 1E-07 2.2E-12 110.6 7.6 107 152-259 421-528 (894)
114 KOG0132 RNA polymerase II C-te 98.5 1.3E-07 2.8E-12 109.8 7.9 79 237-316 421-499 (894)
115 KOG4454 RNA binding protein (R 98.5 1.6E-07 3.5E-12 95.1 4.9 143 150-306 7-157 (267)
116 smart00361 RRM_1 RNA recogniti 98.4 3.7E-07 7.9E-12 78.1 6.0 56 166-221 2-69 (70)
117 KOG0153 Predicted RNA-binding 98.4 4.8E-07 1E-11 97.2 7.6 87 140-227 216-303 (377)
118 KOG0128 RNA-binding protein SA 98.4 6.5E-08 1.4E-12 113.6 0.8 139 153-312 668-815 (881)
119 KOG0153 Predicted RNA-binding 98.3 1.2E-06 2.5E-11 94.3 7.9 78 233-311 224-302 (377)
120 KOG0106 Alternative splicing f 98.3 1.2E-06 2.5E-11 90.4 6.4 143 74-224 1-168 (216)
121 KOG4210 Nuclear localization s 98.3 1.2E-06 2.6E-11 95.0 6.4 163 150-314 86-266 (285)
122 KOG0415 Predicted peptidyl pro 98.2 1.2E-06 2.7E-11 93.9 5.7 76 236-311 238-318 (479)
123 KOG0226 RNA-binding proteins [ 98.2 1.3E-06 2.7E-11 90.6 4.5 129 185-313 136-271 (290)
124 KOG4208 Nucleolar RNA-binding 98.2 5.3E-06 1.2E-10 83.9 7.8 79 234-312 46-130 (214)
125 KOG0415 Predicted peptidyl pro 98.1 2.3E-06 5E-11 91.8 5.0 77 150-226 237-318 (479)
126 KOG1548 Transcription elongati 98.1 2.5E-05 5.4E-10 84.3 11.7 154 72-225 132-350 (382)
127 KOG4661 Hsp27-ERE-TATA-binding 98.1 6E-06 1.3E-10 93.0 7.0 74 238-311 406-484 (940)
128 KOG4208 Nucleolar RNA-binding 98.1 8.9E-06 1.9E-10 82.3 7.6 79 149-227 46-130 (214)
129 KOG0129 Predicted RNA-binding 98.0 4.5E-05 9.8E-10 86.2 12.8 142 67-208 252-432 (520)
130 PF03467 Smg4_UPF3: Smg-4/UPF3 98.0 5.3E-06 1.1E-10 84.0 3.9 90 652-741 5-99 (176)
131 KOG1457 RNA binding protein (c 98.0 2.2E-05 4.8E-10 80.0 8.1 78 237-314 34-120 (284)
132 KOG1365 RNA-binding protein Fu 98.0 7.2E-05 1.6E-09 81.4 12.3 153 151-305 59-236 (508)
133 KOG2193 IGF-II mRNA-binding pr 97.9 1E-06 2.2E-11 96.3 -2.7 151 153-310 2-155 (584)
134 KOG0112 Large RNA-binding prot 97.9 2.1E-05 4.5E-10 93.4 7.6 152 74-227 372-531 (975)
135 KOG0533 RRM motif-containing p 97.9 3.7E-05 8.1E-10 81.1 8.2 78 236-313 82-163 (243)
136 KOG0533 RRM motif-containing p 97.9 2.9E-05 6.2E-10 81.9 7.2 77 150-226 81-161 (243)
137 KOG0151 Predicted splicing reg 97.9 2.8E-05 6.2E-10 90.0 7.7 85 143-227 165-257 (877)
138 KOG4661 Hsp27-ERE-TATA-binding 97.8 3.8E-05 8.3E-10 86.7 7.9 76 150-225 403-483 (940)
139 KOG0151 Predicted splicing reg 97.8 2.3E-05 5E-10 90.8 6.3 78 234-311 171-256 (877)
140 KOG0116 RasGAP SH3 binding pro 97.7 4.3E-05 9.4E-10 86.5 5.6 74 152-226 288-366 (419)
141 KOG0116 RasGAP SH3 binding pro 97.7 6.3E-05 1.4E-09 85.2 6.9 75 238-313 289-368 (419)
142 PF11608 Limkain-b1: Limkain b 97.6 0.00021 4.6E-09 62.8 7.5 69 238-311 3-76 (90)
143 KOG4676 Splicing factor, argin 97.5 4E-05 8.6E-10 83.6 1.9 158 153-312 8-226 (479)
144 KOG4209 Splicing factor RNPS1, 97.5 0.00011 2.5E-09 77.3 5.1 79 233-312 97-180 (231)
145 KOG4307 RNA binding protein RB 97.5 0.00022 4.9E-09 82.6 7.6 160 151-311 310-513 (944)
146 PF04059 RRM_2: RNA recognitio 97.5 0.00042 9E-09 63.3 7.7 73 153-225 2-85 (97)
147 PF11608 Limkain-b1: Limkain b 97.4 0.00038 8.2E-09 61.3 6.7 68 153-225 3-75 (90)
148 KOG4454 RNA binding protein (R 97.4 9E-05 2E-09 75.6 3.2 75 236-311 8-86 (267)
149 KOG4210 Nuclear localization s 97.3 0.00035 7.6E-09 76.0 6.7 172 53-228 70-265 (285)
150 KOG0128 RNA-binding protein SA 97.3 9.7E-05 2.1E-09 87.6 2.2 139 76-226 669-814 (881)
151 KOG0226 RNA-binding proteins [ 97.3 0.00023 5.1E-09 74.1 4.4 76 152-227 190-270 (290)
152 PF08777 RRM_3: RNA binding mo 97.2 0.00073 1.6E-08 62.8 6.2 70 239-309 3-77 (105)
153 KOG4209 Splicing factor RNPS1, 97.1 0.0005 1.1E-08 72.6 4.8 77 148-225 97-178 (231)
154 COG5175 MOT2 Transcriptional r 97.0 0.0022 4.8E-08 69.1 8.6 76 237-312 114-203 (480)
155 COG5175 MOT2 Transcriptional r 96.6 0.0027 5.8E-08 68.4 5.4 75 152-226 114-202 (480)
156 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0051 1.1E-07 56.6 5.9 72 237-310 6-90 (100)
157 KOG1995 Conserved Zn-finger pr 96.4 0.0029 6.3E-08 69.2 4.4 78 236-313 65-155 (351)
158 PF14605 Nup35_RRM_2: Nup53/35 96.4 0.0066 1.4E-07 49.4 5.3 52 238-291 2-53 (53)
159 KOG2193 IGF-II mRNA-binding pr 96.4 0.0033 7.1E-08 69.6 4.5 103 238-341 2-107 (584)
160 KOG1855 Predicted RNA-binding 96.4 0.0047 1E-07 68.7 5.5 66 232-297 226-309 (484)
161 PF08777 RRM_3: RNA binding mo 96.3 0.0089 1.9E-07 55.6 6.3 59 153-212 2-60 (105)
162 KOG0115 RNA-binding protein p5 96.2 0.0075 1.6E-07 63.3 5.9 89 201-300 6-98 (275)
163 PF14605 Nup35_RRM_2: Nup53/35 96.2 0.011 2.4E-07 48.0 5.5 52 153-206 2-53 (53)
164 KOG1295 Nonsense-mediated deca 96.2 0.0025 5.5E-08 70.3 2.3 73 652-725 5-79 (376)
165 KOG4307 RNA binding protein RB 96.2 0.011 2.4E-07 69.0 7.4 70 239-308 869-943 (944)
166 KOG1995 Conserved Zn-finger pr 95.6 0.012 2.5E-07 64.6 4.3 76 151-226 65-153 (351)
167 KOG3152 TBP-binding protein, a 95.6 0.0073 1.6E-07 63.4 2.4 68 236-303 73-157 (278)
168 KOG1855 Predicted RNA-binding 95.5 0.014 3E-07 65.2 4.5 75 148-222 227-319 (484)
169 KOG2314 Translation initiation 95.4 0.026 5.7E-07 64.8 6.2 74 235-308 56-140 (698)
170 PF07576 BRAP2: BRCA1-associat 94.9 0.15 3.2E-06 47.9 8.9 86 652-740 10-96 (110)
171 KOG2202 U2 snRNP splicing fact 94.9 0.015 3.3E-07 61.1 2.4 62 252-313 83-149 (260)
172 PF08952 DUF1866: Domain of un 94.8 0.09 2E-06 51.5 7.2 75 235-313 25-108 (146)
173 PF05172 Nup35_RRM: Nup53/35/4 94.7 0.063 1.4E-06 49.5 5.6 72 151-224 5-89 (100)
174 KOG3152 TBP-binding protein, a 94.5 0.025 5.4E-07 59.5 2.8 68 151-218 73-157 (278)
175 KOG0804 Cytoplasmic Zn-finger 94.5 0.12 2.6E-06 58.3 8.2 81 654-738 74-154 (493)
176 KOG1996 mRNA splicing factor [ 94.3 0.087 1.9E-06 56.3 6.2 61 251-311 300-366 (378)
177 KOG2314 Translation initiation 94.2 0.087 1.9E-06 60.7 6.4 71 152-222 58-139 (698)
178 KOG4849 mRNA cleavage factor I 93.5 0.062 1.4E-06 58.5 3.5 70 152-221 80-156 (498)
179 PF08675 RNA_bind: RNA binding 93.2 0.27 5.9E-06 43.7 6.4 54 238-295 10-63 (87)
180 PF15023 DUF4523: Protein of u 93.0 0.39 8.4E-06 46.7 7.6 74 234-310 83-160 (166)
181 KOG2202 U2 snRNP splicing fact 92.7 0.05 1.1E-06 57.4 1.4 58 167-224 83-145 (260)
182 KOG4676 Splicing factor, argin 92.7 0.12 2.5E-06 57.3 4.2 72 238-310 8-87 (479)
183 KOG2416 Acinus (induces apopto 92.3 0.11 2.4E-06 60.3 3.5 76 237-313 444-523 (718)
184 KOG2591 c-Mpl binding protein, 91.7 0.33 7.3E-06 56.0 6.5 93 203-307 151-247 (684)
185 PF10309 DUF2414: Protein of u 91.6 0.8 1.7E-05 38.6 7.0 54 237-294 5-62 (62)
186 KOG2591 c-Mpl binding protein, 91.0 0.35 7.6E-06 55.9 5.7 79 142-222 165-247 (684)
187 PF08675 RNA_bind: RNA binding 90.9 1 2.2E-05 40.1 7.2 55 153-211 10-64 (87)
188 PF08952 DUF1866: Domain of un 90.8 0.5 1.1E-05 46.4 5.8 73 151-227 26-107 (146)
189 KOG2135 Proteins containing th 90.8 0.33 7.2E-06 55.2 5.1 73 240-314 375-448 (526)
190 PF04847 Calcipressin: Calcipr 90.5 0.52 1.1E-05 48.3 5.9 63 250-313 8-72 (184)
191 PF15023 DUF4523: Protein of u 89.9 1 2.2E-05 44.0 6.9 78 144-224 78-159 (166)
192 KOG2416 Acinus (induces apopto 89.9 0.22 4.9E-06 57.8 3.0 67 147-214 439-506 (718)
193 KOG1996 mRNA splicing factor [ 89.8 0.55 1.2E-05 50.4 5.6 74 152-225 281-365 (378)
194 KOG4849 mRNA cleavage factor I 89.7 0.33 7.1E-06 53.1 3.9 73 237-309 80-159 (498)
195 KOG4285 Mitotic phosphoprotein 89.1 1.5 3.3E-05 47.5 8.2 73 237-312 197-270 (350)
196 KOG2068 MOT2 transcription fac 87.7 0.32 6.9E-06 53.4 2.2 77 237-313 77-164 (327)
197 PF03467 Smg4_UPF3: Smg-4/UPF3 87.2 0.67 1.4E-05 47.1 4.1 77 150-226 5-97 (176)
198 PF10309 DUF2414: Protein of u 85.7 3.4 7.3E-05 34.9 6.7 53 153-209 6-62 (62)
199 KOG2068 MOT2 transcription fac 83.9 0.66 1.4E-05 51.0 2.3 76 152-227 77-163 (327)
200 PF14111 DUF4283: Domain of un 82.6 1.9 4.1E-05 41.9 4.8 105 164-272 29-140 (153)
201 KOG4574 RNA-binding protein (c 82.1 0.94 2E-05 54.9 2.8 73 239-312 300-374 (1007)
202 PF04847 Calcipressin: Calcipr 77.5 3.3 7.1E-05 42.5 4.7 62 165-227 8-71 (184)
203 PF03880 DbpA: DbpA RNA bindin 77.0 8.3 0.00018 33.3 6.4 59 247-309 11-74 (74)
204 KOG0115 RNA-binding protein p5 76.5 2.4 5.3E-05 45.0 3.5 58 153-210 32-93 (275)
205 KOG4285 Mitotic phosphoprotein 75.6 6.3 0.00014 42.9 6.3 62 153-217 198-259 (350)
206 PF07576 BRAP2: BRCA1-associat 74.8 20 0.00044 33.7 8.8 63 239-301 14-81 (110)
207 PF07292 NID: Nmi/IFP 35 domai 72.1 3 6.5E-05 37.7 2.5 67 192-259 1-74 (88)
208 KOG2135 Proteins containing th 69.8 2.4 5.2E-05 48.5 1.6 79 148-228 368-447 (526)
209 KOG2253 U1 snRNP complex, subu 64.4 4.5 9.7E-05 48.2 2.5 70 150-223 38-107 (668)
210 KOG4574 RNA-binding protein (c 64.1 3.7 8.1E-05 50.0 1.8 74 154-228 300-375 (1007)
211 PF11767 SET_assoc: Histone ly 60.8 30 0.00064 29.6 6.2 55 248-306 11-65 (66)
212 KOG4019 Calcineurin-mediated s 59.7 14 0.00031 37.6 4.7 74 239-313 12-91 (193)
213 PF10567 Nab6_mRNP_bdg: RNA-re 57.9 1.1E+02 0.0024 33.7 11.2 147 149-296 12-213 (309)
214 KOG2253 U1 snRNP complex, subu 57.3 10 0.00022 45.4 3.7 69 236-308 39-107 (668)
215 KOG2318 Uncharacterized conser 52.7 79 0.0017 37.6 9.8 130 147-309 169-305 (650)
216 KOG4483 Uncharacterized conser 47.8 40 0.00087 38.2 6.2 55 237-292 391-445 (528)
217 PF03880 DbpA: DbpA RNA bindin 43.4 67 0.0014 27.7 5.8 59 162-224 11-74 (74)
218 PF11767 SET_assoc: Histone ly 43.2 72 0.0016 27.3 5.8 55 163-221 11-65 (66)
219 KOG0804 Cytoplasmic Zn-finger 41.9 79 0.0017 36.6 7.5 65 237-301 74-142 (493)
220 KOG2891 Surface glycoprotein [ 40.4 17 0.00038 39.0 2.0 77 236-312 148-268 (445)
221 PRK14548 50S ribosomal protein 38.4 66 0.0014 28.9 5.0 56 239-294 22-81 (84)
222 KOG4410 5-formyltetrahydrofola 36.6 79 0.0017 34.4 6.1 48 152-200 330-378 (396)
223 TIGR03636 L23_arch archaeal ri 35.7 83 0.0018 27.8 5.2 55 239-293 15-73 (77)
224 KOG4483 Uncharacterized conser 34.0 91 0.002 35.5 6.3 56 151-207 390-445 (528)
225 KOG4410 5-formyltetrahydrofola 28.5 1.6E+02 0.0035 32.2 6.8 47 238-285 331-378 (396)
226 COG5105 MIH1 Mitotic inducer, 26.3 1.9E+02 0.0041 32.3 7.0 97 665-769 243-344 (427)
227 KOG2891 Surface glycoprotein [ 26.1 23 0.0005 38.1 0.1 62 153-214 150-247 (445)
228 COG5594 Uncharacterized integr 25.6 1.6E+02 0.0035 36.7 7.0 31 149-179 205-236 (827)
229 KOG4019 Calcineurin-mediated s 21.6 55 0.0012 33.5 1.7 74 153-227 11-90 (193)
No 1
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=6e-75 Score=639.89 Aligned_cols=518 Identities=53% Similarity=0.791 Sum_probs=390.7
Q ss_pred HHHHhhcCCCcEEEeecCCCCCcccEEEEEecChhhccccCccccCCCCccccCCCCCCCCCCcEEEEcCCCCCCcHHHH
Q 003463 90 EDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSEL 169 (818)
Q Consensus 90 el~diF~~~G~i~V~~d~~t~~skG~a~v~f~~~~~a~~~~~~~l~n~~~~~~g~~~~~e~~srtLfV~NLP~~vTEeeL 169 (818)
+++++|...|++++..+....... .. ...+....+.+++|..+ +++ +| .+|
T Consensus 2 ~d~~lf~~~G~~el~~~~~~~~~~---~~--------------~~~n~~~~~~~~~P~~~--s~~-~~---------~~l 52 (549)
T KOG4660|consen 2 EDCDLFSSGGGMELDADSFDNLSV---RN--------------SDRNSAGFVFPEHPPGE--SRT-FV---------SEL 52 (549)
T ss_pred CccccccCCCCCCcccccccchhh---cc--------------cccCCCccccCCCCCCC--CCC-Ch---------hhH
Confidence 567899999999877665433222 10 11244557778888887 666 77 678
Q ss_pred HHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCCCCCCCCccceeeecCCCCC
Q 003463 170 RALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSV 249 (818)
Q Consensus 170 r~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tL~V~NLp~~v 249 (818)
-.+|+.| +..+ +.+++.+++.++++|+|.|||.+|
T Consensus 53 ~a~f~~~----------------------------------~~p~-----------~~~np~~~~~~~~~L~v~nl~~~V 87 (549)
T KOG4660|consen 53 SALFEPF----------------------------------NKPL-----------RPDNPSEKDMNQGTLVVFNLPRSV 87 (549)
T ss_pred Hhhhhcc----------------------------------CCCC-----------CcCCCCcccCccceEEEEecCCcC
Confidence 8889888 1111 115566778889999999999999
Q ss_pred CHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcccchhhhccchhccHH
Q 003463 250 SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELEQD 329 (818)
Q Consensus 250 teedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r~~~~~ql~~~~~~~ 329 (818)
++++|+++|+.||+|+.|+.+...++.+||+|.|+++|++|+++|++.++.|++|+ ++.+.+++.+-+..
T Consensus 88 sn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k----~~~~~~~~~~~~~~------ 157 (549)
T KOG4660|consen 88 SNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK----RPGGARRAMGLQSG------ 157 (549)
T ss_pred CHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc----CCCcccccchhccc------
Confidence 99999999999999999999999999999999999999999999999999999999 77777776665554
Q ss_pred HHHHHHhhcCCCCCCCCCCCCccCCCCCCCCccccccCCCCCCCCCCCcCCCCCCCcccCCCCCCccccccccCCccCcc
Q 003463 330 ESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTISKSPNFRNMSPTTSNHMPGLASILHPQVSTLEKIAPIGKDQGRG 409 (818)
Q Consensus 330 ~l~~~f~~~GsP~a~s~P~~~~~~~~p~~~~~~~~~~~~~~~~~~sP~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~ 409 (818)
..+..++++|.++++|+.|.+ .+.+..++|..... ++...++ +-....+...+.-
T Consensus 158 --~~~~~~~~~p~a~s~pgg~~~---------------~~~~g~l~P~~s~~-------~~~~~~~-~~~~~~~~~~~~~ 212 (549)
T KOG4660|consen 158 --TSFLNHFGSPLANSPPGGWPR---------------GQLFGMLSPTRSSI-------LLEHISS-VDGSSPGRETPLL 212 (549)
T ss_pred --chhhhhccchhhcCCCCCCcC---------------Ccceeeeccchhhh-------hhhcchh-ccCccccccccch
Confidence 557789999999999999961 12233355654332 2222111 1111111222222
Q ss_pred cchhhhhccccccCCCccccCCCCCCCcCCccCCccCCCCCCCCCCCCcccCCCCcccCCCCCCCCCCCCCCcccCCCCC
Q 003463 410 SLMEHALTNTISANGASFQQSNSFSEPKIGLYRGTVSSFGPSPSNGSGVETLSGPQFLWGSPSRYSEHSSSPAWQTSSMG 489 (818)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 489 (818)
.| |.|.+ ....-+|+++++.. |..+++..++.+++++--+|
T Consensus 213 ~h--q~~~~------~~~~~s~a~~~~~~----------G~~~s~~~~v~t~S~~~g~~--------------------- 253 (549)
T KOG4660|consen 213 NH--QRFVE------FADNRSYAFSEPRG----------GFLISNSSGVITFSGPGGVW--------------------- 253 (549)
T ss_pred hh--hhhhh------hccccchhhcccCC----------ceecCCCCceEEecCCCccc---------------------
Confidence 23 33332 11124567777632 56677777888888774444
Q ss_pred CCCCCCCccCCCCCCCCCCCCCCCccccCcCCCCCCCCcccccCCCCCCCCCcCCCCccccCCCCCCCCCccccccCCCc
Q 003463 490 HPFSSNGKIHGLPYSGRQGSFLGSSQHHHVGSAPSGVPLERRFGFLPESPETSFMNPVAFCGMGIGQNDGSFMVNMGSRA 569 (818)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsap~~~~~~~~~~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 569 (818)
+++... .........+++||||+||+ ..+....+++++.+..+++.++.+.
T Consensus 254 n~~~~~---------r~~~~~~~~~~~~hi~~~Ps------------------~~~l~~~~~~~f~~~s~~~~~~~~~-- 304 (549)
T KOG4660|consen 254 NPFPSR---------RQRQNSSSSHYEHHIGSAPS------------------MHHLLSRISVGFNGGSGALEMNSNG-- 304 (549)
T ss_pred CCcccc---------ccccccCcccccCccCCCcc------------------cccccccCccccCCCCCCccccccc--
Confidence 122111 11222344567999999996 1223345567777777776554322
Q ss_pred CCCCC-ccCCCCCCCCCCc-ccccCCCCCCCcccCCCCCCCCCCCccccccc---cccccccccCCCCccccccccccch
Q 003463 570 SVNPG-ITVPRNLSDNGSS-FRVMSSPRLSPVFLGNGPYPGLTPANIEGLYE---RGRSRRIENNNGNQLDSKKQFQLEL 644 (818)
Q Consensus 570 ~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---r~r~rr~~~~~~~~~~~~~~~~~~~ 644 (818)
..|-| .+..+++.+..+. +++.+.++..+.|-+++.+. ...+...+ ..+.||.+. ...+ ...+++.+|+
T Consensus 305 ~~n~g~~~~t~~~~e~~s~n~~~e~~~rv~~~f~~~~~~~----~~~~~~~~~~~~~~~~Rtt~-~i~n-i~n~~~~~dl 378 (549)
T KOG4660|consen 305 QANQGFLTKTGNVTEFNSKNVGMESSPRVPKNFEGRRSYT----SQNDYPVELILNYRDRRTTV-MIKN-IPNKYGQLDL 378 (549)
T ss_pred cCCCCccccCcccccccCCCccccccCCCCcccccccccc----cccccccccccccccchhhh-hhhc-cccchhHHHH
Confidence 33444 4678899888886 99999999999999888653 33444444 677788886 3333 3489999999
Q ss_pred hhHhcCCCcceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCccc
Q 003463 645 EKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWE 724 (818)
Q Consensus 645 ~~i~~g~d~rTtvMirNIPn~~~~~~l~~~id~~~~~~ydf~Ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~g~~w~ 724 (818)
.+|.+|+|.|||+||||||||||++||++. ||.++|+|||+||||||+|+||||||||||++|+++++||++|||++|+
T Consensus 379 ~~Ildge~~rtt~~iknipNK~T~~ml~~~-d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~ 457 (549)
T KOG4660|consen 379 LRILDGECPRTTLMIKNIPNKYTSKMLLAA-DEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWE 457 (549)
T ss_pred HHHHhCcCchhhhHhhccCchhhHHhhhhh-hccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchh
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEEeeecccHHHHHHHhccCcccCCCCCccceEEcCCCCCCCCccccccCCCCCCcccccCCCCC
Q 003463 725 KFNSEKVASLAYARIQGRAALVAHFQNSSLMNEDKRCRPILFHSEGPEAGDQVTQEQLNSNSVNFQVCPSNGS 797 (818)
Q Consensus 725 ~~~s~k~~~~~~A~iQg~~~l~~~~~~s~~~~~~~~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (818)
+|+|+|||+|+|||||||++|++|||||++|||++.|+|++|++ ++.|. +|++|... +++.+....+
T Consensus 458 ~FnS~Kia~itYArIQGk~~Li~hFqnS~lm~E~e~y~Pvvf~p--p~dg~---~~~~p~~~-~~~a~~~~s~ 524 (549)
T KOG4660|consen 458 KFNSEKIASITYARIQGKEALIEHFQNSSLMCEDEAYRPVVFSP--PEDGR---EEPEPVKL-NQDAGAGHST 524 (549)
T ss_pred hhcceeeeeeehhhhhchHHHHHHhhcccccccchhcCceEecC--ccccc---ccCccccc-cccCCCCccc
Confidence 99999999999999999999999999999999999999999998 77777 99999988 8776655443
No 2
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=100.00 E-value=2.5e-46 Score=336.92 Aligned_cols=97 Identities=67% Similarity=1.202 Sum_probs=96.4
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEEE
Q 003463 654 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVAS 733 (818)
Q Consensus 654 rTtvMirNIPn~~~~~~l~~~id~~~~~~ydf~Ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 733 (818)
|||||||||||||||+||+++||+.++|+||||||||||+++||+|||||||+++++|.+|+++|+|++|+.++|+|||+
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccHHHHHHHhc
Q 003463 734 LAYARIQGRAALVAHFQ 750 (818)
Q Consensus 734 ~~~A~iQg~~~l~~~~~ 750 (818)
|+||||||++|||+|||
T Consensus 81 i~yAriQG~~alv~~f~ 97 (97)
T PF04059_consen 81 ISYARIQGKDALVEHFR 97 (97)
T ss_pred EehhHhhCHHHHHHhhC
Confidence 99999999999999997
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=4.4e-32 Score=300.25 Aligned_cols=241 Identities=18% Similarity=0.291 Sum_probs=199.6
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCCC
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP 146 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~~ 146 (818)
-++++|++||.+++|.++.++|+.+|.| .|..|..+++++||+||.|.+.+.|. .+++..+.+...++....+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 3689999999999999999999999987 57888889999999999999877554 4556666665555544433
Q ss_pred CC-CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccc--cc
Q 003463 147 YG-EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RK 218 (818)
Q Consensus 147 ~~-e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~g--r~ 218 (818)
.. ....++|||+|||.++++++|+++|++||.|..+++ .+.++|||||+|.+.++|++|++.|+|..+.| .+
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~ 162 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEP 162 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 32 235679999999999999999999999999988773 45689999999999999999999999998876 56
Q ss_pred ccccccCCCCCCCC----------------C-------------------------------------------------
Q 003463 219 LDIHFSIPKDNPSD----------------K------------------------------------------------- 233 (818)
Q Consensus 219 L~V~~a~pk~~~~~----------------~------------------------------------------------- 233 (818)
|.|.++........ .
T Consensus 163 i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR01661 163 ITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQ 242 (352)
T ss_pred EEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccc
Confidence 77777643220000 0
Q ss_pred -----------------------CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHH
Q 003463 234 -----------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVR 285 (818)
Q Consensus 234 -----------------------~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e 285 (818)
.....+|||+|||+++++++|+++|++||.|+++++ ++.++|||||+|.+.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~ 322 (352)
T TIGR01661 243 RASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYD 322 (352)
T ss_pred cCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHH
Confidence 000125999999999999999999999999999976 5678999999999999
Q ss_pred HHHHHHHHcCCCccCCceEEEEecCCCcc
Q 003463 286 AAEAALKSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 286 ~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
+|.+|+..|||..|.||+|+|.|..++..
T Consensus 323 ~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 323 EAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999987764
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=9.2e-31 Score=307.83 Aligned_cols=265 Identities=19% Similarity=0.331 Sum_probs=220.1
Q ss_pred ccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCC---
Q 003463 76 DFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH--- 145 (818)
Q Consensus 76 e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~--- 145 (818)
.+||++|+.+++|.+++++|+.+|.| .|+.|..+++++||+||.|.+.+.|. .++...+.+..+++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 58999999999999999999999986 68889889999999999999887554 233232444444443221
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 146 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 146 ~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
.......++|||+|||.++++++|+++|+.||.|.+|++ .++++|||||+|.+.++|++|++.++|..+.++.|.|
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence 112233568999999999999999999999999999874 4678999999999999999999999999999999999
Q ss_pred cccCCCCCC-CCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCC
Q 003463 222 HFSIPKDNP-SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNR 296 (818)
Q Consensus 222 ~~a~pk~~~-~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG 296 (818)
....++... ........+|||+||+.++|+++|+++|++||.|.++++ .+.++|||||+|.+.++|.+|++.|+|
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 876655433 123334568999999999999999999999999999865 345688999999999999999999999
Q ss_pred CccC----CceEEEEecCCCccc----------------------chhhhccchhccHHHHHHHHhhcCC
Q 003463 297 SDIA----GKRIKLEPSRPGGAR----------------------RNLMLQLNQELEQDESRILQHQVGS 340 (818)
Q Consensus 297 ~~i~----Gr~L~V~~a~~~~~r----------------------~~~~~ql~~~~~~~~l~~~f~~~Gs 340 (818)
..+. |+.|.|.+++.+.++ ..++.++...+++++++.+|.+||.
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~ 311 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGE 311 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCC
Confidence 9999 999999988766544 2467778889999999999999984
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=1e-29 Score=274.21 Aligned_cols=250 Identities=20% Similarity=0.333 Sum_probs=207.9
Q ss_pred ccCCCCCchhhhhhcCccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----ccC
Q 003463 58 IGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLL 130 (818)
Q Consensus 58 IgnLlPddeddl~~~v~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~~ 130 (818)
.+.-.|+ .|---...-+|+||++||.++.|++|+.+|...|.| +|+.|+.++.++||+||+|.+++.|. .++
T Consensus 68 ~ggPpP~-weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~ln 146 (506)
T KOG0117|consen 68 YGGPPPG-WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELN 146 (506)
T ss_pred cCCCCCc-ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhh
Confidence 4444554 345555678999999999999999999999999987 69999999999999999999988655 444
Q ss_pred ccccCCC-CccccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCC-EEEEE------eCCCcccEEEEEEccHHHH
Q 003463 131 HYSVPNG-AGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLY------TACKHRGFVMISYYDIRAA 202 (818)
Q Consensus 131 ~~~l~n~-~~~~~g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~-I~~v~------~~~ksrG~AFV~F~d~e~A 202 (818)
++.+..+ .+.+ .....+++|||+|||.+.++++|.+.|++.++ |..|. ...++||||||+|++...|
T Consensus 147 n~Eir~GK~igv-----c~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~A 221 (506)
T KOG0117|consen 147 NYEIRPGKLLGV-----CVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAA 221 (506)
T ss_pred CccccCCCEeEE-----EEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhH
Confidence 4444322 1111 12346799999999999999999999999886 55554 2568999999999999999
Q ss_pred HHHHHHhcC--cccccccccccccCCCCCCCCCCC-CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEE
Q 003463 203 RTAMRALQN--KPLRRRKLDIHFSIPKDNPSDKDL-NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFI 279 (818)
Q Consensus 203 ~~Al~~Lng--~~l~gr~L~V~~a~pk~~~~~~~~-~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFV 279 (818)
..|.++|-. ..+.|..+.|.|+.|+..+..+.. .-+.|||+||+.++|+|.|+++|++||.|.+|+.. +.||||
T Consensus 222 a~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFV 298 (506)
T KOG0117|consen 222 AMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFV 298 (506)
T ss_pred HHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEE
Confidence 999988754 456799999999999887665433 33689999999999999999999999999999764 669999
Q ss_pred EEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcccc
Q 003463 280 EFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 316 (818)
Q Consensus 280 eF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r~ 316 (818)
.|.++++|.+|++.+||++|.|..|.|.+|+|..+++
T Consensus 299 Hf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k 335 (506)
T KOG0117|consen 299 HFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKK 335 (506)
T ss_pred eecchHHHHHHHHHhcCceecCceEEEEecCChhhhc
Confidence 9999999999999999999999999999999976554
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.9e-29 Score=296.76 Aligned_cols=245 Identities=19% Similarity=0.319 Sum_probs=198.9
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcEE---EeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCC-
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGME---LEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH- 145 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i~---V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~- 145 (818)
...++|++|+.++++.+++++|+.+|.|. |..+ .++.++||+||.|.+.+.|. .+++..+.+....+....
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 46799999999999999999999999873 4333 46788999999999988665 233333333222221111
Q ss_pred -----CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccc-
Q 003463 146 -----PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR- 215 (818)
Q Consensus 146 -----~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~- 215 (818)
.......++|||+|||.++|+++|+++|+.||+|.++.+ .++++|||||+|.+.++|.+|++.|++..+.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~ 246 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGL 246 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecc
Confidence 112234578999999999999999999999999999874 4678999999999999999999999999999
Q ss_pred ---cccccccccCCCCCCCC--------------CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCC
Q 003463 216 ---RRKLDIHFSIPKDNPSD--------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKR 274 (818)
Q Consensus 216 ---gr~L~V~~a~pk~~~~~--------------~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~sr 274 (818)
|+.+.|..+..+..... ......+|||+||+.++|+++|+++|++||.|++|++ ++.++
T Consensus 247 ~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~ 326 (562)
T TIGR01628 247 AKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSR 326 (562)
T ss_pred cccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcC
Confidence 99999988765543210 1123457999999999999999999999999999976 46778
Q ss_pred ceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcccchhh
Q 003463 275 HHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLM 319 (818)
Q Consensus 275 G~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r~~~~ 319 (818)
|||||+|.+.++|.+|+..|||+.+.|++|.|.++..+..++..+
T Consensus 327 g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~ 371 (562)
T TIGR01628 327 GFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHL 371 (562)
T ss_pred CeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHH
Confidence 999999999999999999999999999999999999887665433
No 7
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=4.6e-29 Score=288.50 Aligned_cols=235 Identities=21% Similarity=0.320 Sum_probs=193.2
Q ss_pred hcCccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhccc----cCccccCCC-Ccccc
Q 003463 71 AGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNG-AGTVA 142 (818)
Q Consensus 71 ~~v~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~~----~~~~~l~n~-~~~~~ 142 (818)
....+++||++||.+++|++++++|..+|.| .|+.| .++.++||+||.|.+.+.|.. ++++.+.++ ...+.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 4456899999999999999999999999976 57778 789999999999999886653 334433322 11111
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCC-EEEEE------eCCCcccEEEEEEccHHHHHHHHHHhcC--cc
Q 003463 143 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGD-IRTLY------TACKHRGFVMISYYDIRAARTAMRALQN--KP 213 (818)
Q Consensus 143 g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~-I~~v~------~~~ksrG~AFV~F~d~e~A~~Al~~Lng--~~ 213 (818)
.....++|||+|||.++++++|.++|++++. |..+. ..++++|||||+|.+.++|.+|++.|.. ..
T Consensus 134 -----~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~ 208 (578)
T TIGR01648 134 -----ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQ 208 (578)
T ss_pred -----ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceE
Confidence 1234789999999999999999999999864 33332 1356899999999999999999998864 45
Q ss_pred cccccccccccCCCCCCCCCC-CCccceeeecCCCCCCHHHHHHHhhcc--CCeEEEEecCCCCceEEEEEcCHHHHHHH
Q 003463 214 LRRRKLDIHFSIPKDNPSDKD-LNQGTLVVFNLDPSVSNEDLRQIFGAY--GEVKEIRETPHKRHHKFIEFYDVRAAEAA 290 (818)
Q Consensus 214 l~gr~L~V~~a~pk~~~~~~~-~~~~tL~V~NLp~~vteedL~~lFs~f--G~I~~vr~~g~srG~aFVeF~d~e~A~~A 290 (818)
+.|+.|.|.|+.++....... ...++|||+||+.++++++|+++|++| |+|++|++. ++||||+|.+.++|++|
T Consensus 209 l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 209 LWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKA 285 (578)
T ss_pred ecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHH
Confidence 789999999998866443322 234689999999999999999999999 999999764 57999999999999999
Q ss_pred HHHcCCCccCCceEEEEecCCCcc
Q 003463 291 LKSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 291 i~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
++.|||.+|.|+.|+|.|+++...
T Consensus 286 i~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 286 MDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHHhCCCEECCEEEEEEEccCCCc
Confidence 999999999999999999988654
No 8
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.3e-29 Score=253.93 Aligned_cols=213 Identities=25% Similarity=0.422 Sum_probs=177.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
.+..++|+|..||..+|+|||+.+|...|+|++|+ +++.+.||+||.|.+++||++|+..|+|.++..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34567899999999999999999999999999998 5889999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEEcCHHHHHHHHHHcCCCc
Q 003463 224 SIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSD 298 (818)
Q Consensus 224 a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr-----~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~ 298 (818)
++|.. ..++..+|||++||+.+|..||+++|++||.|+..| +++.+||.+||+|+.+.+|++||+.|||.+
T Consensus 118 ARPSs----~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSS----DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCCh----hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 99865 445677999999999999999999999999998765 478899999999999999999999999999
Q ss_pred cCC--ceEEEEecCCCcccchhhhccchhccHHHHHHHHhhcCCCCCCCCCCCCccCCCCCCCCcccccc------CCCC
Q 003463 299 IAG--KRIKLEPSRPGGARRNLMLQLNQELEQDESRILQHQVGSPITNSPPGNWVQFSSPIEHNPLQTIS------KSPN 370 (818)
Q Consensus 299 i~G--r~L~V~~a~~~~~r~~~~~ql~~~~~~~~l~~~f~~~GsP~a~s~P~~~~~~~~p~~~~~~~~~~------~~~~ 370 (818)
..| .+|.|+|+..+.++..... + ..-|++|. +++++|++| +.|++. +...
T Consensus 194 P~g~tepItVKFannPsq~t~~a~----------l---s~ly~sp~--------rr~~Gp~hh-~~~r~r~~~~~~~~~~ 251 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQKTNQAL----------L---SQLYQSPA--------RRYGGPMHH-QAQRFRLDNLLNPHAA 251 (360)
T ss_pred CCCCCCCeEEEecCCcccccchhh----------h---HHhhcCcc--------ccCCCcccc-hhhhhccccccchhhh
Confidence 888 6899999987754432111 0 11233332 567889998 555542 2334
Q ss_pred CCCCCCCcCCCCCCCcc
Q 003463 371 FRNMSPTTSNHMPGLAS 387 (818)
Q Consensus 371 ~~~~sP~~~~~~~g~~s 387 (818)
..+|||++.+++.++++
T Consensus 252 ~~rfsP~~~d~m~~l~~ 268 (360)
T KOG0145|consen 252 QARFSPMTIDGMSGLAG 268 (360)
T ss_pred hccCCCccccccceeee
Confidence 55899998888877653
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=6.6e-27 Score=258.96 Aligned_cols=159 Identities=21% Similarity=0.406 Sum_probs=143.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
+.++|||+|||.+++|++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|++|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4789999999999999999999999999999874 56789999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccC
Q 003463 226 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA 300 (818)
Q Consensus 226 pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~ 300 (818)
++.. .....+|||+|||..+++++|+++|++||.|..+++ ++.++|||||+|.+.++|++|++.|||..+.
T Consensus 82 ~~~~----~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~ 157 (352)
T TIGR01661 82 PSSD----SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPS 157 (352)
T ss_pred cccc----ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccC
Confidence 7543 234568999999999999999999999999988865 3457899999999999999999999999998
Q ss_pred C--ceEEEEecCCCc
Q 003463 301 G--KRIKLEPSRPGG 313 (818)
Q Consensus 301 G--r~L~V~~a~~~~ 313 (818)
| .+|+|.++....
T Consensus 158 g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 158 GCTEPITVKFANNPS 172 (352)
T ss_pred CCceeEEEEECCCCC
Confidence 7 678899987654
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=7.5e-28 Score=277.95 Aligned_cols=262 Identities=18% Similarity=0.233 Sum_probs=201.3
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcEE-EeecCCCCCcccEEEEEecChhhccccC------ccccCCCCccccCCC--
Q 003463 75 DDFDLRGLPSSLEDLEDYDIFGSGGGME-LEGEPQESLSMSMSKISISDSASGNGLL------HYSVPNGAGTVAGEH-- 145 (818)
Q Consensus 75 ~e~~V~~Lp~s~~E~el~diF~~~G~i~-V~~d~~t~~skG~a~v~f~~~~~a~~~~------~~~l~n~~~~~~g~~-- 145 (818)
..++|++||.+++|.+++++|+.+|.|. |..- ..++++||.|.+.+.|..+. ...+.+....+....
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~----~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMML----PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE----CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 5689999999999999999999999984 2111 24689999999988665332 222333322221110
Q ss_pred ----CC-------CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCC-cccEEEEEEccHHHHHHHHHHhcCcc
Q 003463 146 ----PY-------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK-HRGFVMISYYDIRAARTAMRALQNKP 213 (818)
Q Consensus 146 ----~~-------~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~k-srG~AFV~F~d~e~A~~Al~~Lng~~ 213 (818)
+. ......+|||+||++.+|+++|+++|+.||+|.+|.+..+ .+++|||+|.+.++|++|++.|+|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~ 158 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGAD 158 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCc
Confidence 00 0112247999999999999999999999999999985333 34799999999999999999999999
Q ss_pred ccc--ccccccccCCCCCC-------C------------------------C----------------------------
Q 003463 214 LRR--RKLDIHFSIPKDNP-------S------------------------D---------------------------- 232 (818)
Q Consensus 214 l~g--r~L~V~~a~pk~~~-------~------------------------~---------------------------- 232 (818)
|.+ +.|+|.|+.+.... . .
T Consensus 159 i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 238 (481)
T TIGR01649 159 IYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGG 238 (481)
T ss_pred ccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCccccc
Confidence 964 47777776542100 0 0
Q ss_pred --------------------------------CCCCccceeeecCCC-CCCHHHHHHHhhccCCeEEEEecCCCCceEEE
Q 003463 233 --------------------------------KDLNQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFI 279 (818)
Q Consensus 233 --------------------------------~~~~~~tL~V~NLp~-~vteedL~~lFs~fG~I~~vr~~g~srG~aFV 279 (818)
......+|||+||++ .+|+++|+++|+.||.|.+|++...++|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV 318 (481)
T TIGR01649 239 DRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALI 318 (481)
T ss_pred ccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEE
Confidence 001235899999998 69999999999999999999987667899999
Q ss_pred EEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc-----------------------------------------ccchh
Q 003463 280 EFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG-----------------------------------------ARRNL 318 (818)
Q Consensus 280 eF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~-----------------------------------------~r~~~ 318 (818)
+|.+.++|.+|+..|||..|.|++|+|.+++... .+..+
T Consensus 319 ~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~ 398 (481)
T TIGR01649 319 EMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLH 398 (481)
T ss_pred EECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEE
Confidence 9999999999999999999999999999875421 01234
Q ss_pred hhccchhccHHHHHHHHhhcCC
Q 003463 319 MLQLNQELEQDESRILQHQVGS 340 (818)
Q Consensus 319 ~~ql~~~~~~~~l~~~f~~~Gs 340 (818)
+.++...+++++++++|..+|.
T Consensus 399 v~NLp~~~tee~L~~lF~~~G~ 420 (481)
T TIGR01649 399 LSNIPLSVSEEDLKELFAENGV 420 (481)
T ss_pred EecCCCCCCHHHHHHHHHhcCC
Confidence 5677778889999999998883
No 11
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=7.3e-29 Score=251.40 Aligned_cols=246 Identities=19% Similarity=0.305 Sum_probs=206.8
Q ss_pred CCCcccccccCCCCCchhhhhhcCccccccccCCCCCChHHHHHhhcCCCcEEEeecCCCCCcccEEEEEecChhhcc--
Q 003463 50 LEGVMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN-- 127 (818)
Q Consensus 50 ~ee~~~~~IgnLlPddeddl~~~v~~e~~V~~Lp~s~~E~el~diF~~~G~i~V~~d~~t~~skG~a~v~f~~~~~a~-- 127 (818)
.++.++..|.|+||.. |++..++.||.+++|+|.|++.+ |+.++++.||+||+|.+...|.
T Consensus 37 t~~skTNLIvNYLPQ~--------MTqdE~rSLF~SiGeiEScKLvR---------DKitGqSLGYGFVNYv~p~DAe~A 99 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQN--------MTQDELRSLFGSIGEIESCKLVR---------DKITGQSLGYGFVNYVRPKDAEKA 99 (360)
T ss_pred cCcccceeeeeecccc--------cCHHHHHHHhhcccceeeeeeee---------ccccccccccceeeecChHHHHHH
Confidence 5677899999999987 88888888888888888887765 6889999999999999876554
Q ss_pred --ccCccccCCCCccccCCCCCCC-CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccH
Q 003463 128 --GLLHYSVPNGAGTVAGEHPYGE-HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDI 199 (818)
Q Consensus 128 --~~~~~~l~n~~~~~~g~~~~~e-~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~ 199 (818)
.+++.++.++.++++..+|..+ ....+|||.+||..+|..||..+|++||.|..-+ +++.+||.+||.|+..
T Consensus 100 intlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr 179 (360)
T KOG0145|consen 100 INTLNGLRLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKR 179 (360)
T ss_pred HhhhcceeeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecch
Confidence 6777788888888888877644 4567999999999999999999999999986654 5788999999999999
Q ss_pred HHHHHHHHHhcCccccc--ccccccccCCCCCCCC-------------C-------------------------------
Q 003463 200 RAARTAMRALQNKPLRR--RKLDIHFSIPKDNPSD-------------K------------------------------- 233 (818)
Q Consensus 200 e~A~~Al~~Lng~~l~g--r~L~V~~a~pk~~~~~-------------~------------------------------- 233 (818)
++|++|++.|+|..-.| .+|.|+|+........ .
T Consensus 180 ~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~ 259 (360)
T KOG0145|consen 180 IEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMT 259 (360)
T ss_pred hHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCcc
Confidence 99999999999988765 4688887643211000 0
Q ss_pred ---------------CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHH
Q 003463 234 ---------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 293 (818)
Q Consensus 234 ---------------~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~ 293 (818)
.....+|||.||.++.+|.-|+++|.+||.|..|++ +.+.|||+||.+.+.++|..||..
T Consensus 260 ~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~s 339 (360)
T KOG0145|consen 260 IDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 339 (360)
T ss_pred ccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHH
Confidence 000138999999999999999999999999998865 467899999999999999999999
Q ss_pred cCCCccCCceEEEEecCCC
Q 003463 294 LNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 294 LnG~~i~Gr~L~V~~a~~~ 312 (818)
|||..+++|.|.|.|...+
T Consensus 340 LNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 340 LNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred hcCccccceEEEEEEecCC
Confidence 9999999999999997654
No 12
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.8e-26 Score=235.97 Aligned_cols=213 Identities=18% Similarity=0.355 Sum_probs=174.1
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhccccCccccCCCCccccCCCCCCC-C
Q 003463 75 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGTVAGEHPYGE-H 150 (818)
Q Consensus 75 ~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~~~~~~~l~n~~~~~~g~~~~~e-~ 150 (818)
+.++|++|...++|+-+..||...|.+ .|.+|.. +|. ++.. .+...... .
T Consensus 7 rtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~--------~v~-----wa~~-------------p~nQsk~t~~ 60 (321)
T KOG0148|consen 7 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL--------KVN-----WATA-------------PGNQSKPTSN 60 (321)
T ss_pred ceEEeeccChhhHHHHHHHHHHhccccccceeehhhh--------ccc-----cccC-------------cccCCCCccc
Confidence 568889999999999999999998877 3555510 010 0000 01111111 1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
.--.+||+.|...++-|+|++.|.+||+|.++++ ++|+|||+||.|.+.++|++||..|+|..|.+|.|+-.|+.
T Consensus 61 ~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 61 QHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred cceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 1246999999999999999999999999988873 78999999999999999999999999999999999999997
Q ss_pred CCCCCCC------------CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHH
Q 003463 226 PKDNPSD------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKS 293 (818)
Q Consensus 226 pk~~~~~------------~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~ 293 (818)
.|..... .....++|||+|++.-+||++|++.|++||.|.+||+.+ -+||+||+|++.|+|.+||..
T Consensus 141 RKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk-~qGYaFVrF~tkEaAahAIv~ 219 (321)
T KOG0148|consen 141 RKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK-DQGYAFVRFETKEAAAHAIVQ 219 (321)
T ss_pred cCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEec-ccceEEEEecchhhHHHHHHH
Confidence 6642211 123457999999999999999999999999999999974 479999999999999999999
Q ss_pred cCCCccCCceEEEEecCCCcc
Q 003463 294 LNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 294 LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
+|+.+|.|..+++.|.+....
T Consensus 220 mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 220 MNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred hcCceeCceEEEEeccccCCC
Confidence 999999999999999987654
No 13
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=1.6e-26 Score=255.09 Aligned_cols=163 Identities=23% Similarity=0.419 Sum_probs=145.4
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
.....++|||+|||+++||++|+++|+.||+|++|++ +++++|||||+|.+.++|++|++.|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 3456789999999999999999999999999999874 56789999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCC
Q 003463 223 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRS 297 (818)
Q Consensus 223 ~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~ 297 (818)
++.+... .....+|||.|||.++|+++|+++|++||.|+.+++ +++++++|||+|.+.++|++||+.||+.
T Consensus 183 ~a~p~~~----~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 183 YARPGGE----SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred ccccccc----ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 9876432 234568999999999999999999999999998865 4566899999999999999999999999
Q ss_pred ccCC--ceEEEEecCCCcc
Q 003463 298 DIAG--KRIKLEPSRPGGA 314 (818)
Q Consensus 298 ~i~G--r~L~V~~a~~~~~ 314 (818)
.+.| ++|+|.+++....
T Consensus 259 ~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 259 IPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred ccCCCceeEEEEECCcccc
Confidence 8876 7899999886543
No 14
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=4.6e-26 Score=263.13 Aligned_cols=162 Identities=25% Similarity=0.335 Sum_probs=140.1
Q ss_pred CCcEEEEcCCCC-CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCC
Q 003463 151 PSRTLFVRNINS-NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 229 (818)
Q Consensus 151 ~srtLfV~NLP~-~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 229 (818)
++++|||+|||. .+|+++|+++|+.||.|..|++....+|||||+|.+.++|++|++.|+|..|.|++|+|.++..+..
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~ 353 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNV 353 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccc
Confidence 567999999998 6999999999999999999997655689999999999999999999999999999999998754321
Q ss_pred CCC------------C---------------------CCCccceeeecCCCCCCHHHHHHHhhccCC--eEEEEecCC--
Q 003463 230 PSD------------K---------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGE--VKEIRETPH-- 272 (818)
Q Consensus 230 ~~~------------~---------------------~~~~~tL~V~NLp~~vteedL~~lFs~fG~--I~~vr~~g~-- 272 (818)
... + .....+|||+|||.++++++|+++|+.||. |+.|++...
T Consensus 354 ~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~ 433 (481)
T TIGR01649 354 QPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDN 433 (481)
T ss_pred cCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCC
Confidence 000 0 012358999999999999999999999998 888877433
Q ss_pred -CCceEEEEEcCHHHHHHHHHHcCCCccCCce------EEEEecCCC
Q 003463 273 -KRHHKFIEFYDVRAAEAALKSLNRSDIAGKR------IKLEPSRPG 312 (818)
Q Consensus 273 -srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~------L~V~~a~~~ 312 (818)
++++|||+|.+.++|.+||..|||..|.|+. |+|.|++++
T Consensus 434 ~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 434 ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3789999999999999999999999999985 999999864
No 15
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=1.3e-25 Score=257.54 Aligned_cols=238 Identities=21% Similarity=0.286 Sum_probs=189.1
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc---ccCccccCCCCccccC----
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGTVAG---- 143 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~---~~~~~~l~n~~~~~~g---- 143 (818)
...+||++||..+++.++.++|..+|.| .|..|..++.++||+||.|.+.+.|. .+.+..+.+..+.+..
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecchh
Confidence 4679999999999999999999999987 57778889999999999999877554 3333333333221110
Q ss_pred ---------CCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHh
Q 003463 144 ---------EHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRAL 209 (818)
Q Consensus 144 ---------~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~L 209 (818)
.........++|||+|||.++++++|+++|+.||.|..|.+ +++++|||||+|.+.++|.+|++.|
T Consensus 169 ~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 169 KNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred hhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhc
Confidence 00011123689999999999999999999999999999874 3578999999999999999999999
Q ss_pred cCcccccccccccccCCCCCCC----------------------------------C-----------------------
Q 003463 210 QNKPLRRRKLDIHFSIPKDNPS----------------------------------D----------------------- 232 (818)
Q Consensus 210 ng~~l~gr~L~V~~a~pk~~~~----------------------------------~----------------------- 232 (818)
+|..|.|++|.|.|+....... .
T Consensus 249 ~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRD 328 (457)
T ss_pred CCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccc
Confidence 9999999999999953110000 0
Q ss_pred -----------------------------CCCCccceeeecCCCCCC----------HHHHHHHhhccCCeEEEEec-CC
Q 003463 233 -----------------------------KDLNQGTLVVFNLDPSVS----------NEDLRQIFGAYGEVKEIRET-PH 272 (818)
Q Consensus 233 -----------------------------~~~~~~tL~V~NLp~~vt----------eedL~~lFs~fG~I~~vr~~-g~ 272 (818)
......+|+|.||....+ .+||++.|++||.|+.|.+. +.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~ 408 (457)
T TIGR01622 329 GIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKN 408 (457)
T ss_pred ccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 001234688888855443 37899999999999999875 67
Q ss_pred CCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 273 KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 273 srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
..|++||+|.+.++|.+|++.|||..++|+.|.|.|...
T Consensus 409 ~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 409 SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 789999999999999999999999999999999999754
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=2.4e-25 Score=258.58 Aligned_cols=238 Identities=16% Similarity=0.228 Sum_probs=178.9
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---------EEeecCCCCCcccEEEEEecChhhcc---ccCccccCCCCccc
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---------ELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGTV 141 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---------~V~~d~~t~~skG~a~v~f~~~~~a~---~~~~~~l~n~~~~~ 141 (818)
...+||++||..+++.+|.++|..++.. .+..+......+||+||.|.+.+.|. .+.+..+.+...++
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~l~v 254 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVFLKI 254 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCceeEe
Confidence 4679999999999999999999874110 01122234566899999999887554 23332222222111
Q ss_pred cCCC------------------------------CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CC
Q 003463 142 AGEH------------------------------PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----AC 186 (818)
Q Consensus 142 ~g~~------------------------------~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ 186 (818)
.... .......++|||+|||..+++++|+++|+.||.|..+.+ ++
T Consensus 255 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g 334 (509)
T TIGR01642 255 RRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATG 334 (509)
T ss_pred cCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCC
Confidence 1000 001234579999999999999999999999999998763 57
Q ss_pred CcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCCCC------------------------CCCCccceee
Q 003463 187 KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD------------------------KDLNQGTLVV 242 (818)
Q Consensus 187 ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~------------------------~~~~~~tL~V 242 (818)
+++|||||+|.+.++|+.|++.|+|..|.|+.|.|.++........ ......+|+|
T Consensus 335 ~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l 414 (509)
T TIGR01642 335 LSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQL 414 (509)
T ss_pred CcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEe
Confidence 7899999999999999999999999999999999998754321110 0113457899
Q ss_pred ecCCCC--C--------CHHHHHHHhhccCCeEEEEecC--------CCCceEEEEEcCHHHHHHHHHHcCCCccCCceE
Q 003463 243 FNLDPS--V--------SNEDLRQIFGAYGEVKEIRETP--------HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRI 304 (818)
Q Consensus 243 ~NLp~~--v--------teedL~~lFs~fG~I~~vr~~g--------~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L 304 (818)
.|+... + ..++|+++|++||.|+.|++.. ...|+|||+|.+.++|++|+.+|||..|.|+.|
T Consensus 415 ~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v 494 (509)
T TIGR01642 415 TNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVV 494 (509)
T ss_pred ccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 998632 1 2368999999999999998632 236899999999999999999999999999999
Q ss_pred EEEecCC
Q 003463 305 KLEPSRP 311 (818)
Q Consensus 305 ~V~~a~~ 311 (818)
.|.|...
T Consensus 495 ~~~~~~~ 501 (509)
T TIGR01642 495 VAAFYGE 501 (509)
T ss_pred EEEEeCH
Confidence 9999754
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=2.4e-24 Score=249.72 Aligned_cols=163 Identities=20% Similarity=0.402 Sum_probs=143.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
..++|||+|||+++++++|+++|++||+|.+|++ +++++|||||+|.+.++|++|++.|+|..|.|+.|+|.+..
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4589999999999999999999999999999984 67899999999999999999999999999999999998654
Q ss_pred CCCCCC-------CCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHH
Q 003463 226 PKDNPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKS 293 (818)
Q Consensus 226 pk~~~~-------~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~ 293 (818)
...... .......+|||+||++++++++|+++|+.||.|+++++ ++.++|||||+|.+.++|.+||..
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 221110 11123468999999999999999999999999999976 345789999999999999999999
Q ss_pred cCCCccCCceEEEEecCCCc
Q 003463 294 LNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 294 LnG~~i~Gr~L~V~~a~~~~ 313 (818)
||+.+++|+.|+|.++.++.
T Consensus 266 mNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hCCCeeCCeEEEEEecCCCc
Confidence 99999999999999988654
No 18
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=9.7e-24 Score=227.18 Aligned_cols=163 Identities=23% Similarity=0.442 Sum_probs=143.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcc-ccc--cccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKP-LRR--RKLDIH 222 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~-l~g--r~L~V~ 222 (818)
..-+|||+-||..++|+||+++|++||.|.+|. .++.++|||||.|++.++|.+|+.+|++.. |.| .+|.|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 456899999999999999999999999999886 477899999999999999999999998855 444 688999
Q ss_pred ccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCC-
Q 003463 223 FSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRS- 297 (818)
Q Consensus 223 ~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~- 297 (818)
|+....++. ..+.+|||+-|++.+||.|++++|++||.|++|++ .+.+||||||+|.+.+.|..||++|||.
T Consensus 113 ~Ad~E~er~---~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 113 YADGERERI---VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ccchhhhcc---ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 987654332 44678999999999999999999999999999965 5678999999999999999999999997
Q ss_pred ccCC--ceEEEEecCCCcccc
Q 003463 298 DIAG--KRIKLEPSRPGGARR 316 (818)
Q Consensus 298 ~i~G--r~L~V~~a~~~~~r~ 316 (818)
.+.| .+|.|+|+.+++.|.
T Consensus 190 tmeGcs~PLVVkFADtqkdk~ 210 (510)
T KOG0144|consen 190 TMEGCSQPLVVKFADTQKDKD 210 (510)
T ss_pred eeccCCCceEEEecccCCCch
Confidence 6666 689999999887664
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3e-23 Score=228.43 Aligned_cols=240 Identities=19% Similarity=0.293 Sum_probs=189.3
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----cc-----CccccCCCCc---
Q 003463 75 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GL-----LHYSVPNGAG--- 139 (818)
Q Consensus 75 ~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~-----~~~~l~n~~~--- 139 (818)
..+||++||.+++..++.++|+..|.| +|..+..++..+||+||+|+-.+... .. .+..+.-...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 469999999999999999999999987 68888889999999999999554322 11 1111111100
Q ss_pred -cc----cC-----CCCC---------CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEE
Q 003463 140 -TV----AG-----EHPY---------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISY 196 (818)
Q Consensus 140 -~~----~g-----~~~~---------~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F 196 (818)
+. .+ +.+. ...+.-+|+|+|||+.+.+.+|+.+|+.||.|..|.+ .++-.|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 00 00 1111 1223568999999999999999999999999999985 455679999999
Q ss_pred ccHHHHHHHHHHhcCcccccccccccccCCCCCCCC-----------------------------------------C--
Q 003463 197 YDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD-----------------------------------------K-- 233 (818)
Q Consensus 197 ~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~-----------------------------------------~-- 233 (818)
.+..+|.+|++.+|+..|.||+|-|.|+.++..-.. +
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~ 245 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEET 245 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccc
Confidence 999999999999999999999999999865431000 0
Q ss_pred CC-------------------------------------------CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-
Q 003463 234 DL-------------------------------------------NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE- 269 (818)
Q Consensus 234 ~~-------------------------------------------~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~- 269 (818)
+. ...+|||+|||+++|+++|.+.|++||.|..+.+
T Consensus 246 D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV 325 (678)
T KOG0127|consen 246 DGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIV 325 (678)
T ss_pred cccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEE
Confidence 00 0048999999999999999999999999998753
Q ss_pred ----cCCCCceEEEEEcCHHHHHHHHHHc-----CC-CccCCceEEEEecCCCcc
Q 003463 270 ----TPHKRHHKFIEFYDVRAAEAALKSL-----NR-SDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 270 ----~g~srG~aFVeF~d~e~A~~Ai~~L-----nG-~~i~Gr~L~V~~a~~~~~ 314 (818)
++.++|.|||.|.+..+|.+||... .| ..+.||.|+|..+-++..
T Consensus 326 ~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 326 KDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred eccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 7889999999999999999999977 23 678899999999876553
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.1e-23 Score=226.78 Aligned_cols=241 Identities=19% Similarity=0.330 Sum_probs=193.8
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhccc----cCccccCCC---CccccC
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNG----LLHYSVPNG---AGTVAG 143 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~~----~~~~~l~n~---~~~~~g 143 (818)
.-++||+.+|+..+|.|++.+|..+|.| -|.+|+.+++++||+||.|.+.+.|.+ +.+.+...+ +..+..
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 3569999999999999999999999987 478899999999999999998776542 222222222 222222
Q ss_pred CCCCCC--CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcc-ccc
Q 003463 144 EHPYGE--HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRR 216 (818)
Q Consensus 144 ~~~~~e--~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~-l~g 216 (818)
.....+ ...++|||+-|+..+||.|++++|++||.|++|++ .+.+||||||.|.+.|.|..||+.||+.. ++|
T Consensus 114 Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 114 ADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred cchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 211112 23689999999999999999999999999999984 56799999999999999999999999954 554
Q ss_pred --ccccccccCCCCCCCCCCC-----------------------------------------------------------
Q 003463 217 --RKLDIHFSIPKDNPSDKDL----------------------------------------------------------- 235 (818)
Q Consensus 217 --r~L~V~~a~pk~~~~~~~~----------------------------------------------------------- 235 (818)
.+|.|+|+++++.+..+..
T Consensus 194 cs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~ 273 (510)
T KOG0144|consen 194 CSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQ 273 (510)
T ss_pred CCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhH
Confidence 5788888776543110000
Q ss_pred --------------------------------------------------------------------------------
Q 003463 236 -------------------------------------------------------------------------------- 235 (818)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (818)
T Consensus 274 ~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~ 353 (510)
T KOG0144|consen 274 LQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAG 353 (510)
T ss_pred HHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccccccc
Confidence
Q ss_pred ---------------------------------------------------------------------CccceeeecCC
Q 003463 236 ---------------------------------------------------------------------NQGTLVVFNLD 246 (818)
Q Consensus 236 ---------------------------------------------------------------------~~~tL~V~NLp 246 (818)
...+|||.+||
T Consensus 354 a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlP 433 (510)
T KOG0144|consen 354 AGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLP 433 (510)
T ss_pred ccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCc
Confidence 00279999999
Q ss_pred CCCCHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Q 003463 247 PSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 247 ~~vteedL~~lFs~fG~I~~vr-----~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
.+.-+.||...|.+||.|++.+ .++-++.|+||.|++..+|.+||..|||..|+.++++|...+.+..
T Consensus 434 qefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 434 QEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred hhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 9999999999999999998875 3667899999999999999999999999999999999999876553
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.89 E-value=8.1e-23 Score=234.47 Aligned_cols=163 Identities=25% Similarity=0.450 Sum_probs=142.9
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
.+.+.++|||+|||.++++++|+++|++||.|..|++ +++++|||||+|.+.++|++||. |+|..+.|++|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 3456789999999999999999999999999999884 56789999999999999999997 89999999999998
Q ss_pred ccCCCCCCCC--------CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHH
Q 003463 223 FSIPKDNPSD--------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEA 289 (818)
Q Consensus 223 ~a~pk~~~~~--------~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~ 289 (818)
++........ ......+|||+|||..+|+++|+++|++||.|..|++. +.++|||||+|.+.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8654322111 11224789999999999999999999999999998753 4678999999999999999
Q ss_pred HHHHcCCCccCCceEEEEecCC
Q 003463 290 ALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 290 Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
|+..|||..|.|+.|+|.|+..
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 9999999999999999999873
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=1e-21 Score=228.08 Aligned_cols=153 Identities=12% Similarity=0.228 Sum_probs=126.0
Q ss_pred CccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCC
Q 003463 73 IMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH 145 (818)
Q Consensus 73 v~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~ 145 (818)
.+.++||++|+.+++|.+++++|..+|.| .+.+|..+++++||+||.|.+.+.+. .+++..+.+...++....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 46789999999999999999999999987 57788899999999999999987654 344444444433332111
Q ss_pred C------------CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHH
Q 003463 146 P------------YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRA 208 (818)
Q Consensus 146 ~------------~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~ 208 (818)
. ......++|||+|||.++++++|+++|+.||.|.++++ +++++|||||+|.+.++|.+|++.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHH
Confidence 0 11123579999999999999999999999999999874 467899999999999999999999
Q ss_pred hcCcccccccccccccC
Q 003463 209 LQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 209 Lng~~l~gr~L~V~~a~ 225 (818)
||+..|.|+.|+|.++.
T Consensus 266 mNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCV 282 (612)
T ss_pred hCCCeeCCeEEEEEecC
Confidence 99999999999987654
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.88 E-value=3.9e-22 Score=231.16 Aligned_cols=178 Identities=22% Similarity=0.321 Sum_probs=153.7
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccc-cccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~-gr~L~V~~a~ 225 (818)
..++|||+|||.+++|++|+++|++||.|.+|++ +++++|||||+|.+.++|++||+.|++..|. ++.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 3589999999999999999999999999999874 5789999999999999999999999999986 7777776553
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCC-eEEEEe------cCCCCceEEEEEcCHHHHHHHHHHcCC--
Q 003463 226 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNR-- 296 (818)
Q Consensus 226 pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~-I~~vr~------~g~srG~aFVeF~d~e~A~~Ai~~LnG-- 296 (818)
..++|||+|||.++++++|.+.|++++. |+++.+ ..+++|||||+|.+.++|.+|++.|+.
T Consensus 137 ----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 137 ----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred ----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 2468999999999999999999999863 333322 245689999999999999999998864
Q ss_pred CccCCceEEEEecCCCcc---------cchhhhccchhccHHHHHHHHhhc
Q 003463 297 SDIAGKRIKLEPSRPGGA---------RRNLMLQLNQELEQDESRILQHQV 338 (818)
Q Consensus 297 ~~i~Gr~L~V~~a~~~~~---------r~~~~~ql~~~~~~~~l~~~f~~~ 338 (818)
..+.|+.|.|+|+.+... +..++.++..++++++|+.+|.+|
T Consensus 207 i~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f 257 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEF 257 (578)
T ss_pred eEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhc
Confidence 367899999999987542 346889999999999999999999
No 24
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=7.7e-22 Score=219.25 Aligned_cols=229 Identities=15% Similarity=0.310 Sum_probs=189.8
Q ss_pred ccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCCCCC
Q 003463 76 DFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYG 148 (818)
Q Consensus 76 e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~~~~ 148 (818)
.++|+ .+++|..++++|+..|.+ +|+.|. + +.||++++|.+...|. .++...+.+..+++.+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r-- 74 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR-- 74 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc--
Confidence 35666 889999999999999976 799998 6 9999999999876543 4444444555666654422
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
..+.|||.||+++++.++|.++|+.||+|.+|++ ..-++|| ||+|.++++|++|++.++|..+.+++|.|....
T Consensus 75 --d~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 75 --DPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred --CCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 2233999999999999999999999999999994 2238999 999999999999999999999999999998876
Q ss_pred CCCCCCCCC----CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCC
Q 003463 226 PKDNPSDKD----LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRS 297 (818)
Q Consensus 226 pk~~~~~~~----~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~ 297 (818)
.+..+.... ..-..++|.|++.++++++|..+|..||.|..+.+ .+.+++|+||+|.+.++|..|++.|++.
T Consensus 152 ~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~ 231 (369)
T KOG0123|consen 152 RKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGK 231 (369)
T ss_pred chhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCC
Confidence 655433222 22358999999999999999999999999999865 4557899999999999999999999999
Q ss_pred ccCCceEEEEecCCCccc
Q 003463 298 DIAGKRIKLEPSRPGGAR 315 (818)
Q Consensus 298 ~i~Gr~L~V~~a~~~~~r 315 (818)
.+.++.+.|..+..+.++
T Consensus 232 ~~~~~~~~V~~aqkk~e~ 249 (369)
T KOG0123|consen 232 IFGDKELYVGRAQKKSER 249 (369)
T ss_pred cCCccceeecccccchhh
Confidence 999999999888775443
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.87 E-value=1.9e-21 Score=225.98 Aligned_cols=163 Identities=17% Similarity=0.304 Sum_probs=135.3
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcC------------CCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQY------------GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR 215 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~f------------G~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~ 215 (818)
.....++|||+|||+++|+++|+++|..+ +.|..+. .++.+|||||+|.+.++|..||+ |+|..|.
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~-~~~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN-INKEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE-ECCCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 34567899999999999999999999975 3445444 46789999999999999999995 9999999
Q ss_pred cccccccccCCCCC------------C-------------CCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-
Q 003463 216 RRKLDIHFSIPKDN------------P-------------SDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE- 269 (818)
Q Consensus 216 gr~L~V~~a~pk~~------------~-------------~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~- 269 (818)
|+.|+|........ . ........+|||+|||..+|+++|+++|+.||.|..+.+
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 328 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI 328 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 99999864321110 0 000112358999999999999999999999999998864
Q ss_pred ----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 270 ----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 270 ----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 329 ~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 329 KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 4668999999999999999999999999999999999998643
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=2e-21 Score=210.41 Aligned_cols=180 Identities=22% Similarity=0.353 Sum_probs=158.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccc-ccccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLDIHFS 224 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~-gr~L~V~~a 224 (818)
..+-|||+.||.++.|+||.-+|++.|+|-+++ .++.+||||||.|.+.++|++|++.||+.+|+ |+.|.|..+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 458999999999999999999999999999998 36889999999999999999999999999996 899999877
Q ss_pred CCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCC-eEEEEe------cCCCCceEEEEEcCHHHHHHHHHHcCCC
Q 003463 225 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGE-VKEIRE------TPHKRHHKFIEFYDVRAAEAALKSLNRS 297 (818)
Q Consensus 225 ~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~-I~~vr~------~g~srG~aFVeF~d~e~A~~Ai~~LnG~ 297 (818)
. .+++|||+|||++.++++|++.|++.++ |.+|.+ ..++||||||+|++..+|..|.++|-..
T Consensus 162 v----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 162 V----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred e----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 5 3568999999999999999999999863 444432 4567999999999999999999888543
Q ss_pred --ccCCceEEEEecCCCcc---------cchhhhccchhccHHHHHHHHhhcCC
Q 003463 298 --DIAGKRIKLEPSRPGGA---------RRNLMLQLNQELEQDESRILQHQVGS 340 (818)
Q Consensus 298 --~i~Gr~L~V~~a~~~~~---------r~~~~~ql~~~~~~~~l~~~f~~~Gs 340 (818)
.+-|..+.|+||.|... +..|++++...++++.|...|.++|.
T Consensus 232 ~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~ 285 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGK 285 (506)
T ss_pred ceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccc
Confidence 66799999999998653 34689999999999999999999983
No 27
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.85 E-value=5.6e-21 Score=186.31 Aligned_cols=163 Identities=24% Similarity=0.338 Sum_probs=143.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
....||||+||+..++++-|+++|-+.|+|..++ ++.+.+|||||+|.++|+|+-|++.|+...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3457999999999999999999999999999997 46679999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEE------EecCCCCceEEEEEcCHHHHHHHHHHcCCCc
Q 003463 225 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI------RETPHKRHHKFIEFYDVRAAEAALKSLNRSD 298 (818)
Q Consensus 225 ~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~v------r~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~ 298 (818)
... ........+|||+||++.+++..|.+.|+.||.+... ..++.+++++||.|.+.+.+.+|+..+||+.
T Consensus 87 s~~---~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 87 SAH---QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ccc---cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 621 1222234689999999999999999999999988763 2467889999999999999999999999999
Q ss_pred cCCceEEEEecCCCccc
Q 003463 299 IAGKRIKLEPSRPGGAR 315 (818)
Q Consensus 299 i~Gr~L~V~~a~~~~~r 315 (818)
+..++|+|.++..+..+
T Consensus 164 l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTK 180 (203)
T ss_pred hcCCceEEEEEEecCCC
Confidence 99999999999776543
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=9.2e-21 Score=195.90 Aligned_cols=148 Identities=28% Similarity=0.462 Sum_probs=137.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCCCC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSD 232 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~ 232 (818)
-+|||+|||..+++.+|+.+|++||+|.+|.+ -|.||||..++...|+.|++.|++-.|.|..|.|+-++.|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI---vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDI---VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeee---ecccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 36999999999999999999999999999986 46799999999999999999999999999999999887653
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 233 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 233 ~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
....+|+|+||.+.++.+||+..|++||.|+++++. ++|+||.|+-.++|..|++.|++.++.|++++|..+..+
T Consensus 76 --k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 --KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred --CCccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 245689999999999999999999999999999986 689999999999999999999999999999999998654
No 29
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=1.4e-19 Score=199.68 Aligned_cols=161 Identities=22% Similarity=0.365 Sum_probs=142.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
.||||++||++++.++|.++|+.+|+|..+.+ ...++||+||+|.-.+++++|++.+.+..+.|+.|.|.++.++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999873 3468999999999999999999999999999999999998765
Q ss_pred CCCCCC----------------------CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec----CCCCceEEEEE
Q 003463 228 DNPSDK----------------------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEF 281 (818)
Q Consensus 228 ~~~~~~----------------------~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~----g~srG~aFVeF 281 (818)
...... +.....|.|+|||+.+...+|+.+|+.||.|.+|.+. ++-+|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 432210 0113589999999999999999999999999999763 34469999999
Q ss_pred cCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 282 YDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 282 ~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
.+..+|.+|++.+||.+|.||+|-|.||-++.
T Consensus 166 k~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred eeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 99999999999999999999999999998765
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=2.3e-19 Score=199.48 Aligned_cols=237 Identities=24% Similarity=0.392 Sum_probs=190.3
Q ss_pred cccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcccc----CccccCCCCccc-------c
Q 003463 77 FDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGNGL----LHYSVPNGAGTV-------A 142 (818)
Q Consensus 77 ~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~~~----~~~~l~n~~~~~-------~ 142 (818)
++|.+|+.+++..++.|+|+.+|.| .|..|.. -++|+ ||.|.+.+.|..+ ++..+.+...-+ .
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~--g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN--GSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC--Cceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999998 5665543 29999 9999998876532 222222221111 1
Q ss_pred CCCCCCC--CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccc
Q 003463 143 GEHPYGE--HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR 216 (818)
Q Consensus 143 g~~~~~e--~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~g 216 (818)
...+..+ ..-+.++|.+++.++++++|..+|..||.|.++.+ .+++++|+||.|.+.++|..|++.|++..+.+
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~ 235 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGD 235 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCc
Confidence 1111111 23468999999999999999999999999999873 56789999999999999999999999999999
Q ss_pred ccccccccCCCCCCC--------------CCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEE
Q 003463 217 RKLDIHFSIPKDNPS--------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKF 278 (818)
Q Consensus 217 r~L~V~~a~pk~~~~--------------~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aF 278 (818)
..+.|..+..+.... .......+|||.||+..++.+.|+++|+.||.|..+++ .+.++|++|
T Consensus 236 ~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gf 315 (369)
T KOG0123|consen 236 KELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGF 315 (369)
T ss_pred cceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEE
Confidence 998888765532111 11234468999999999999999999999999999865 467899999
Q ss_pred EEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcccc
Q 003463 279 IEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 316 (818)
Q Consensus 279 VeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r~ 316 (818)
|+|.+.++|.+|+..+|+..+.++.|.|.++.....++
T Consensus 316 V~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~ 353 (369)
T KOG0123|consen 316 VEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRR 353 (369)
T ss_pred EEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccch
Confidence 99999999999999999999999999999988555444
No 31
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.80 E-value=2.3e-19 Score=204.10 Aligned_cols=161 Identities=25% Similarity=0.456 Sum_probs=139.5
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCC--------CcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 154 TLFVRNINSNVEDSELRALFEQYGDIRTLYTAC--------KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 154 tLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~--------ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
+|||+||++++|.++|..+|...|.|.++.+.. .+.|||||+|.+.++|+.|++.|+|..|+|+.|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999996421 245999999999999999999999999999999999987
Q ss_pred CCCC-----CCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCC-----CCceEEEEEcCHHHHHHHHHHcC
Q 003463 226 PKDN-----PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-----KRHHKFIEFYDVRAAEAALKSLN 295 (818)
Q Consensus 226 pk~~-----~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~-----srG~aFVeF~d~e~A~~Ai~~Ln 295 (818)
.+.. ..........|.|+|||+..+..+++++|..||.|++|++..+ .+|||||+|-+.++|.+|+.+|.
T Consensus 597 ~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~ 676 (725)
T KOG0110|consen 597 NKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALG 676 (725)
T ss_pred CccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhc
Confidence 2111 0111112358999999999999999999999999999988543 48899999999999999999999
Q ss_pred CCccCCceEEEEecCCCcc
Q 003463 296 RSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 296 G~~i~Gr~L~V~~a~~~~~ 314 (818)
.+.+.||+|.++|++....
T Consensus 677 STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 677 STHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred ccceechhhheehhccchH
Confidence 9999999999999987653
No 32
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=2e-18 Score=191.02 Aligned_cols=154 Identities=20% Similarity=0.310 Sum_probs=128.2
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCCC
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHP 146 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~~ 146 (818)
.+++||++||.+++|.+|+++|+.+|.| .|..|..+++++||+||.|.+.+.|. .++...+.+..+++....+
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 5789999999999999999999999987 57778889999999999999887554 3455555555555544333
Q ss_pred C-CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccc--cc
Q 003463 147 Y-GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RK 218 (818)
Q Consensus 147 ~-~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~g--r~ 218 (818)
. .....++|||+|||.++|+++|+++|++||+|+.|++ +++.+|||||+|.+.++|++||+.|++..+.+ ++
T Consensus 187 ~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~ 266 (346)
T TIGR01659 187 GGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQP 266 (346)
T ss_pred cccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 2 2234678999999999999999999999999998873 56788999999999999999999999998876 68
Q ss_pred ccccccCCC
Q 003463 219 LDIHFSIPK 227 (818)
Q Consensus 219 L~V~~a~pk 227 (818)
|.|.++...
T Consensus 267 l~V~~a~~~ 275 (346)
T TIGR01659 267 LTVRLAEEH 275 (346)
T ss_pred EEEEECCcc
Confidence 888887653
No 33
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=3.1e-18 Score=181.03 Aligned_cols=157 Identities=22% Similarity=0.465 Sum_probs=138.6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
-++|||+.|.+.+.|+.|+..|..||+|++|. .+++++|||||+|+-.|.|+-|++.+||..+.||.|+|.. |
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr--P 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR--P 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC--C
Confidence 47899999999999999999999999999998 5889999999999999999999999999999999999984 3
Q ss_pred CCCCCC---------CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHH
Q 003463 227 KDNPSD---------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALK 292 (818)
Q Consensus 227 k~~~~~---------~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~ 292 (818)
...+.. +...-.+|||..+.++++++||+.+|+.||+|+.|.+ ....+||+||||.+..+-.+||.
T Consensus 191 sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 191 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhh
Confidence 222211 1122358999999999999999999999999999976 23468999999999999999999
Q ss_pred HcCCCccCCceEEEEecC
Q 003463 293 SLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 293 ~LnG~~i~Gr~L~V~~a~ 310 (818)
.||=..++|..|+|..+-
T Consensus 271 sMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 271 SMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hcchhhcccceEeccccc
Confidence 999999999999997654
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1e-17 Score=172.14 Aligned_cols=161 Identities=24% Similarity=0.371 Sum_probs=130.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
++..|||||+||..+|||+-|..||.+.|.|..+++... .|+|.++....
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------e~~v~wa~~p~ 52 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------ELKVNWATAPG 52 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh------------------------------hhccccccCcc
Confidence 345699999999999999999999999999998874221 45666655443
Q ss_pred CCCCCCCC-ccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCc
Q 003463 229 NPSDKDLN-QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 302 (818)
Q Consensus 229 ~~~~~~~~-~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr 302 (818)
..+....+ .--++|+.|.+.++.++|++.|.+||+|.++|+ ++++|||+||.|.+.++|++||..|||..|++|
T Consensus 53 nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 53 NQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred cCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 33333322 346899999999999999999999999998875 678999999999999999999999999999999
Q ss_pred eEEEEecCCCccc--------------------chhhhccchhccHHHHHHHHhhcC
Q 003463 303 RIKLEPSRPGGAR--------------------RNLMLQLNQELEQDESRILQHQVG 339 (818)
Q Consensus 303 ~L~V~~a~~~~~r--------------------~~~~~ql~~~~~~~~l~~~f~~~G 339 (818)
.|+-.||..|... ..|+...+..++++.++..|.+||
T Consensus 133 ~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG 189 (321)
T KOG0148|consen 133 TIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG 189 (321)
T ss_pred eeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCC
Confidence 9999999665422 235556666678888888888777
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.73 E-value=1.6e-17 Score=184.89 Aligned_cols=237 Identities=19% Similarity=0.244 Sum_probs=179.1
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChh---hccccCccccCCCCcccc---C-
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSA---SGNGLLHYSVPNGAGTVA---G- 143 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~---~a~~~~~~~l~n~~~~~~---g- 143 (818)
...+++-.|.....+-++.++|+..|.| .+..|..+.+++|++++.|.+.. .+..+.+..+..-+..+. .
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEae 258 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEAE 258 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHHH
Confidence 3567888888888899999999999976 57789999999999999999765 233333333332211110 0
Q ss_pred ----------CC-CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHH
Q 003463 144 ----------EH-PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMR 207 (818)
Q Consensus 144 ----------~~-~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~ 207 (818)
.. .....|-+.|||+||..+++|++|+.+|+.||.|..|.. ++.++||+||+|.+.++|++|+.
T Consensus 259 knr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e 338 (549)
T KOG0147|consen 259 KNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALE 338 (549)
T ss_pred HHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHH
Confidence 00 011234455999999999999999999999999999872 78899999999999999999999
Q ss_pred HhcCcccccccccccccCCCCCCCCC-------C----------------------------------------------
Q 003463 208 ALQNKPLRRRKLDIHFSIPKDNPSDK-------D---------------------------------------------- 234 (818)
Q Consensus 208 ~Lng~~l~gr~L~V~~a~pk~~~~~~-------~---------------------------------------------- 234 (818)
.|||..|.|+.|+|.....+-..... +
T Consensus 339 ~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~ 418 (549)
T KOG0147|consen 339 QLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASA 418 (549)
T ss_pred HhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchH
Confidence 99999999999988643211100000 0
Q ss_pred ----------------------CCccceeeecCCCC--CC--------HHHHHHHhhccCCeEEEEecCCCCceEEEEEc
Q 003463 235 ----------------------LNQGTLVVFNLDPS--VS--------NEDLRQIFGAYGEVKEIRETPHKRHHKFIEFY 282 (818)
Q Consensus 235 ----------------------~~~~tL~V~NLp~~--vt--------eedL~~lFs~fG~I~~vr~~g~srG~aFVeF~ 282 (818)
+...++.++|+=.. .| .||+.+.+.+||.|..|.+...+-|+.||.|.
T Consensus 419 ~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~ 498 (549)
T KOG0147|consen 419 AQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCP 498 (549)
T ss_pred HhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecC
Confidence 00113344444211 11 37888899999999999998888899999999
Q ss_pred CHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 283 DVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 283 d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
+.++|..|+++|||.+|.||.|++.|-.
T Consensus 499 s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 499 SAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred cHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 9999999999999999999999999853
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.71 E-value=1.5e-16 Score=161.13 Aligned_cols=162 Identities=27% Similarity=0.457 Sum_probs=142.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHH----HhhcCCCEEEEE--eCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRA----LFEQYGDIRTLY--TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~----lFs~fG~I~~v~--~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
..++.||||+||+..+..++|++ +|++||.|.+|. .+.+.+|-|||.|.+.+.|-.|+++|+|..+.|++++|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34667999999999999999988 999999999998 367899999999999999999999999999999999999
Q ss_pred ccCCCCCCCCC----------------------------------------------CCCccceeeecCCCCCCHHHHHH
Q 003463 223 FSIPKDNPSDK----------------------------------------------DLNQGTLVVFNLDPSVSNEDLRQ 256 (818)
Q Consensus 223 ~a~pk~~~~~~----------------------------------------------~~~~~tL~V~NLp~~vteedL~~ 256 (818)
|+..+.+...+ ......|++.|||.+++.+.|..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 98654321111 12235799999999999999999
Q ss_pred HhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccC-CceEEEEecC
Q 003463 257 IFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKRIKLEPSR 310 (818)
Q Consensus 257 lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~-Gr~L~V~~a~ 310 (818)
+|.+|.-.++|+......+.|||+|.+...|..|...|.|..|. ...++|.+++
T Consensus 166 lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999988778899999999999999999999999887 7889988875
No 37
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=1.3e-17 Score=170.49 Aligned_cols=167 Identities=23% Similarity=0.434 Sum_probs=138.2
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcc-ccc--ccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKP-LRR--RKLDIHF 223 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~-l~g--r~L~V~~ 223 (818)
..|+|||+-|.+.-.|||++.+|..||.|.+|.+ .+.+||+|||.|.+..+|+.||..|+|.. +-| ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 5789999999999999999999999999999973 67799999999999999999999999854 222 2333333
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q 003463 224 SIPKDNPS------------------------------------------------------------------------ 231 (818)
Q Consensus 224 a~pk~~~~------------------------------------------------------------------------ 231 (818)
++..+++.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 22211000
Q ss_pred --------------------------------------------------------------------------------
Q 003463 232 -------------------------------------------------------------------------------- 231 (818)
Q Consensus 232 -------------------------------------------------------------------------------- 231 (818)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ----------------------CCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCH
Q 003463 232 ----------------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDV 284 (818)
Q Consensus 232 ----------------------~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~ 284 (818)
.+....++|||..||.+..+.||.++|-+||.|++.++ +..+|+|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00001158999999999999999999999999998753 778999999999999
Q ss_pred HHHHHHHHHcCCCccCCceEEEEecCCCcccch
Q 003463 285 RAAEAALKSLNRSDIAGKRIKLEPSRPGGARRN 317 (818)
Q Consensus 285 e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r~~ 317 (818)
.+|+.||.+|||..|+-|+|+|...+|+...|.
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRP 370 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRP 370 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCccccCCC
Confidence 999999999999999999999999999987653
No 38
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.69 E-value=1.8e-14 Score=155.82 Aligned_cols=159 Identities=24% Similarity=0.391 Sum_probs=132.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhh-cCCCEEEEE----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 152 SRTLFVRNINSNVEDSELRALFE-QYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs-~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
.|.+||.|||+++...+|++||. +.|+|+.|. ..+|.+|+|.|+|+++|.+++|++.|+...+.||+|.|+-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 46799999999999999999997 689999987 4789999999999999999999999999999999998864211
Q ss_pred CCC------------------------------------------CCCCC------------------------------
Q 003463 227 KDN------------------------------------------PSDKD------------------------------ 234 (818)
Q Consensus 227 k~~------------------------------------------~~~~~------------------------------ 234 (818)
.+. +.+++
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 000 00000
Q ss_pred ---------CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCC
Q 003463 235 ---------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 301 (818)
Q Consensus 235 ---------~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G 301 (818)
+...++||.||.+.+..+.|++.|.-.|.|..|.+ .+.++|+|.|+|+.+-+|..||..|++.-+..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 01137899999999999999999999999988853 46788999999999999999999999988888
Q ss_pred ceEEEEecC
Q 003463 302 KRIKLEPSR 310 (818)
Q Consensus 302 r~L~V~~a~ 310 (818)
++..+...+
T Consensus 284 ~~~~~Rl~~ 292 (608)
T KOG4212|consen 284 RRMTVRLDR 292 (608)
T ss_pred ccceeeccc
Confidence 888887754
No 39
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=4.9e-16 Score=164.54 Aligned_cols=151 Identities=13% Similarity=0.229 Sum_probs=122.8
Q ss_pred CccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCC
Q 003463 73 IMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEH 145 (818)
Q Consensus 73 v~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~ 145 (818)
+|+++||+.+...+.|+.++..|..||.| ...-|+.|+..+||+||.|.-.++|. .+++..+-++.+++....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 48899999999999999999999999987 46678999999999999999777553 444444433333332211
Q ss_pred CC------------CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHH
Q 003463 146 PY------------GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRA 208 (818)
Q Consensus 146 ~~------------~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~ 208 (818)
.. ..+.-.+|||..+.++.+|+||+..|+.||+|..|.. .+.++||+||+|.+......|+..
T Consensus 192 NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 11 1123468999999999999999999999999999983 567999999999999999999999
Q ss_pred hcCcccccccccccc
Q 003463 209 LQNKPLRRRKLDIHF 223 (818)
Q Consensus 209 Lng~~l~gr~L~V~~ 223 (818)
+|-..+.|+.|+|..
T Consensus 272 MNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGK 286 (544)
T ss_pred cchhhcccceEeccc
Confidence 999999988887754
No 40
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.65 E-value=2e-15 Score=162.49 Aligned_cols=237 Identities=22% Similarity=0.307 Sum_probs=172.8
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcEEEeecCCCCCcccEEEEEecChhhccccCccccCCC----------------
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHYSVPNG---------------- 137 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i~V~~d~~t~~skG~a~v~f~~~~~a~~~~~~~l~n~---------------- 137 (818)
..-+.+|+||++++|.|+..++..+|.|.- ...-+.+-.+|+.|++.+.|..++.|...-.
T Consensus 28 SkV~HlRnlp~e~tE~elI~Lg~pFG~vtn---~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn~~ 104 (492)
T KOG1190|consen 28 SKVVHLRNLPWEVTEEELISLGLPFGKVTN---LLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSNHS 104 (492)
T ss_pred cceeEeccCCccccHHHHHHhcccccceee---eeeeccchhhhhhhcchhhhhheeecccccCccccCcceeehhhhHH
Confidence 456889999999999999999999998720 0011122245666666655544222211000
Q ss_pred -------Cc-------------------cccC--CCC-CCCCCC--cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCC
Q 003463 138 -------AG-------------------TVAG--EHP-YGEHPS--RTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC 186 (818)
Q Consensus 138 -------~~-------------------~~~g--~~~-~~e~~s--rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ 186 (818)
+. .... ... ....++ -+++|.++-+.|+-+-|..+|++||.|..|.+..
T Consensus 105 ~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~ 184 (492)
T KOG1190|consen 105 ELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT 184 (492)
T ss_pred HHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe
Confidence 00 0000 000 011122 2567899999999999999999999999998888
Q ss_pred CcccE-EEEEEccHHHHHHHHHHhcCcccc--cccccccccCC----------CCC-------CCC--------------
Q 003463 187 KHRGF-VMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIP----------KDN-------PSD-------------- 232 (818)
Q Consensus 187 ksrG~-AFV~F~d~e~A~~Al~~Lng~~l~--gr~L~V~~a~p----------k~~-------~~~-------------- 232 (818)
|..|| |.|+|.|.+.|+.|...|+|+.|. .+.|+|.|+.- +.+ +..
T Consensus 185 Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~ 264 (492)
T KOG1190|consen 185 KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAF 264 (492)
T ss_pred cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccc
Confidence 88887 999999999999999999999885 35666665421 110 000
Q ss_pred --------------------------CCC--CccceeeecCCC-CCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcC
Q 003463 233 --------------------------KDL--NQGTLVVFNLDP-SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYD 283 (818)
Q Consensus 233 --------------------------~~~--~~~tL~V~NLp~-~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d 283 (818)
-.. ....|.|.||.. .+|.+-|..+|+.||+|.+|++.-+++..|.|+|.|
T Consensus 265 ~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd 344 (492)
T KOG1190|consen 265 GSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSD 344 (492)
T ss_pred cccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecc
Confidence 000 024677888875 579999999999999999999877777899999999
Q ss_pred HHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 284 VRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 284 ~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
...|+-|+..|+|..+.||+|+|.+++...
T Consensus 345 ~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 345 GQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred hhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 999999999999999999999999998754
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.61 E-value=3.1e-16 Score=174.82 Aligned_cols=162 Identities=23% Similarity=0.376 Sum_probs=139.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
.++..||+|+--|+..++..+|.++|+.+|+|..|. .++.++|.|||+|.|.+....|+. |.|..+.|.+|.|+
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEec
Confidence 345568999999999999999999999999999987 366799999999999999999996 99999999999998
Q ss_pred ccCCCCCCCCC----------CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHH
Q 003463 223 FSIPKDNPSDK----------DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAA 287 (818)
Q Consensus 223 ~a~pk~~~~~~----------~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A 287 (818)
.....++.... ...-..|||+||...+++++|+.+|++||.|..|.+ ++.++||+||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 76443322110 011123999999999999999999999999999853 788999999999999999
Q ss_pred HHHHHHcCCCccCCceEEEEecC
Q 003463 288 EAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 288 ~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
.+|+..|||.+|.|+.|+|....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred HHHHHHhccceecCceEEEEEee
Confidence 99999999999999999997653
No 42
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.60 E-value=1.9e-15 Score=163.35 Aligned_cols=162 Identities=18% Similarity=0.397 Sum_probs=141.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
..++|||++|++++++|.|++.|.+||+|..|.+ +++++||+||+|.+.+...+++. .....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 5789999999999999999999999999999873 67899999999999999999987 46788999999999988
Q ss_pred CCCCCCCCCC--CccceeeecCCCCCCHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEEcCHHHHHHHHHHcCCCc
Q 003463 226 PKDNPSDKDL--NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSD 298 (818)
Q Consensus 226 pk~~~~~~~~--~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr-----~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~ 298 (818)
++........ ...+|||++||.+++++++++.|.+||.|..+. .+.+.++|+||.|++++++.+++. ..-+.
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 8775443322 356899999999999999999999999887763 255679999999999999999886 67889
Q ss_pred cCCceEEEEecCCCcc
Q 003463 299 IAGKRIKLEPSRPGGA 314 (818)
Q Consensus 299 i~Gr~L~V~~a~~~~~ 314 (818)
|.|+.+.|.-|.|+..
T Consensus 163 ~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEV 178 (311)
T ss_pred ecCceeeEeeccchhh
Confidence 9999999999988763
No 43
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.3e-14 Score=142.06 Aligned_cols=149 Identities=22% Similarity=0.329 Sum_probs=126.8
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCC--cccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK--HRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~k--srG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
..+++|||+|||.++.+.||.++|-+||.|..|.+... .-.||||+|++..+|+.||..-+|..+.|..|+|+|+...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 45789999999999999999999999999999986444 3469999999999999999999999999999999997543
Q ss_pred CCCCC----------------------CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHH
Q 003463 228 DNPSD----------------------KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVR 285 (818)
Q Consensus 228 ~~~~~----------------------~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e 285 (818)
..... ....+..+.|++||++.+.+||++...+-|.|....+.. .+++.|+|...|
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~r--Dg~GvV~~~r~e 161 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQR--DGVGVVEYLRKE 161 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeec--ccceeeeeeehh
Confidence 21110 011234799999999999999999999999998887754 468999999999
Q ss_pred HHHHHHHHcCCCccC
Q 003463 286 AAEAALKSLNRSDIA 300 (818)
Q Consensus 286 ~A~~Ai~~LnG~~i~ 300 (818)
+.+-|++.|+...+.
T Consensus 162 DMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 162 DMKYAVRKLDDQKFR 176 (241)
T ss_pred hHHHHHHhhcccccc
Confidence 999999999887665
No 44
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=4.8e-14 Score=161.11 Aligned_cols=191 Identities=25% Similarity=0.373 Sum_probs=153.8
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC--
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP-- 226 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p-- 226 (818)
+...+.|+|+|||..+..++|...|..||+|..+.+. ...--++|.|.+..+|++|++.|....+...++++.++..
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecC-cccceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 3445789999999999999999999999999998543 3333499999999999999999999999888887766421
Q ss_pred -----CCC-------------CCC------------CC-------------CCc-cceeeecCCCCCCHHHHHHHhhccC
Q 003463 227 -----KDN-------------PSD------------KD-------------LNQ-GTLVVFNLDPSVSNEDLRQIFGAYG 262 (818)
Q Consensus 227 -----k~~-------------~~~------------~~-------------~~~-~tL~V~NLp~~vteedL~~lFs~fG 262 (818)
+.. +.. .+ ... .+|||.||++++|.++|...|..+|
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 100 000 00 011 2499999999999999999999999
Q ss_pred CeEEEEecCC--------CCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC--------C---cc--cchhhhc
Q 003463 263 EVKEIRETPH--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP--------G---GA--RRNLMLQ 321 (818)
Q Consensus 263 ~I~~vr~~g~--------srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~--------~---~~--r~~~~~q 321 (818)
.|..+.+..+ +.|||||+|.+.++|+.|++.|+|+.|+|+.|.|+++.. + .. .+.++++
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRN 620 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRN 620 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeec
Confidence 9999966322 349999999999999999999999999999999999871 1 11 1347788
Q ss_pred cchhccHHHHHHHHhhcCC
Q 003463 322 LNQELEQDESRILQHQVGS 340 (818)
Q Consensus 322 l~~~~~~~~l~~~f~~~Gs 340 (818)
++-+.+..+++.+|..||.
T Consensus 621 ipFeAt~rEVr~LF~aFGq 639 (725)
T KOG0110|consen 621 IPFEATKREVRKLFTAFGQ 639 (725)
T ss_pred cchHHHHHHHHHHHhcccc
Confidence 8889999999999999983
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.49 E-value=6.5e-13 Score=143.39 Aligned_cols=160 Identities=26% Similarity=0.359 Sum_probs=136.4
Q ss_pred CcEEEEcCCCCC-CcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCC
Q 003463 152 SRTLFVRNINSN-VEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNP 230 (818)
Q Consensus 152 srtLfV~NLP~~-vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~ 230 (818)
+..|.|.||..+ ||.+.|..+|.-||+|.+|++..+.+--|.|+|.|...|+-|++.|+|..+.|++|+|.+++.....
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 478889998654 9999999999999999999987777789999999999999999999999999999999988643211
Q ss_pred CCC----C---------------------------CCccceeeecCCCCCCHHHHHHHhhccCCe-EEEEecCCCCceEE
Q 003463 231 SDK----D---------------------------LNQGTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRETPHKRHHKF 278 (818)
Q Consensus 231 ~~~----~---------------------------~~~~tL~V~NLp~~vteedL~~lFs~fG~I-~~vr~~g~srG~aF 278 (818)
..+ + ....+|.+.|+|.+++||||+..|..-|-. +..+..++.+.+|+
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal 456 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMAL 456 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceee
Confidence 100 0 122489999999999999999999988755 55677777788999
Q ss_pred EEEcCHHHHHHHHHHcCCCccCC-ceEEEEecCC
Q 003463 279 IEFYDVRAAEAALKSLNRSDIAG-KRIKLEPSRP 311 (818)
Q Consensus 279 VeF~d~e~A~~Ai~~LnG~~i~G-r~L~V~~a~~ 311 (818)
+++.++|+|..|+..++.+.+++ ..|+|+|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999986 5999999875
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.49 E-value=5.6e-14 Score=146.06 Aligned_cols=147 Identities=21% Similarity=0.329 Sum_probs=124.4
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcEEEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccCCCCCCC
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPYGE 149 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~~~~e 149 (818)
+.++||+|||...++.++..+|..+|.| |+.|. .|.|+||++.+..++. -+.+|++.+..+.++..+.. .
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkV-lECDI----vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-s 75 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKV-LECDI----VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-S 75 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCce-Eeeee----ecccceEEeecccccHHHHhhcccceecceEEEEEecccc-C
Confidence 4679999999999999999999999988 33332 3468999998876544 36778887776666554443 5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDN 229 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~ 229 (818)
+.+++|+|+||.+.++.+||+..|++||.|..|++ -++|+||.|+-.++|..|++.|++..+.|++++|+.+..+-.
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdi---vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDI---VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 152 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeee---ecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccc
Confidence 67899999999999999999999999999999976 478999999999999999999999999999999999876543
No 47
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=8.2e-14 Score=142.59 Aligned_cols=150 Identities=26% Similarity=0.430 Sum_probs=129.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCCC-
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPS- 231 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~- 231 (818)
..+||++||+.+.+++|..+|..||.|..+.+ ..||+||+|.+..+|+.|+..|++..|.+..+.|.++.......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m---k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g 78 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM---KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRG 78 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee---ecccceeccCchhhhhcccchhcCceecceeeeeecccccccccC
Confidence 46999999999999999999999999999865 35889999999999999999999999999888888887421100
Q ss_pred ---------------CCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCC
Q 003463 232 ---------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNR 296 (818)
Q Consensus 232 ---------------~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG 296 (818)
........|.|.++...+.+.+|.+.|.++|.+..... ..+++||+|...++|.+|+..|++
T Consensus 79 ~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~ 155 (216)
T KOG0106|consen 79 RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDG 155 (216)
T ss_pred CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccc
Confidence 01223457889999999999999999999999955554 578999999999999999999999
Q ss_pred CccCCceEEEEe
Q 003463 297 SDIAGKRIKLEP 308 (818)
Q Consensus 297 ~~i~Gr~L~V~~ 308 (818)
.++.++.|++..
T Consensus 156 ~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 156 KKLNGRRISVEK 167 (216)
T ss_pred hhhcCceeeecc
Confidence 999999999943
No 48
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.44 E-value=5.8e-13 Score=133.95 Aligned_cols=150 Identities=21% Similarity=0.347 Sum_probs=115.3
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEE--EeCCCc----ccEEEEEEccHHHHHHHHHHhcCcccc---cccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTL--YTACKH----RGFVMISYYDIRAARTAMRALQNKPLR---RRKLDI 221 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v--~~~~ks----rG~AFV~F~d~e~A~~Al~~Lng~~l~---gr~L~V 221 (818)
.-|||||.+||.++...||..+|..|--.+.+ +.+.+. +-+|||.|.+..+|..|+.+|||..++ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46999999999999999999999988654443 333333 479999999999999999999999986 667777
Q ss_pred cccCCCCCCCCC---------------------------------------------------CC---------------
Q 003463 222 HFSIPKDNPSDK---------------------------------------------------DL--------------- 235 (818)
Q Consensus 222 ~~a~pk~~~~~~---------------------------------------------------~~--------------- 235 (818)
++++......+. +.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 765432110000 00
Q ss_pred ----------------CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCC-CCceEEEEEcCHHHHHHHHHHcCCCc
Q 003463 236 ----------------NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-KRHHKFIEFYDVRAAEAALKSLNRSD 298 (818)
Q Consensus 236 ----------------~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~-srG~aFVeF~d~e~A~~Ai~~LnG~~ 298 (818)
...||||-||.+++||++|+++|+.|-.....++..+ ....||++|++.+.|..|+..|.|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 0038999999999999999999999976555555322 23579999999999999999999876
Q ss_pred cC
Q 003463 299 IA 300 (818)
Q Consensus 299 i~ 300 (818)
|.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 64
No 49
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=5.8e-12 Score=134.61 Aligned_cols=231 Identities=18% Similarity=0.267 Sum_probs=171.2
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE------------EEeecCCCCCcccEEEEEecChhhc-----cccCccccCCC
Q 003463 75 DDFDLRGLPSSLEDLEDYDIFGSGGGM------------ELEGEPQESLSMSMSKISISDSASG-----NGLLHYSVPNG 137 (818)
Q Consensus 75 ~e~~V~~Lp~s~~E~el~diF~~~G~i------------~V~~d~~t~~skG~a~v~f~~~~~a-----~~~~~~~l~n~ 137 (818)
--+.||+|-..+.|.++.+..+.+|.| .|+|++.+++ ..-|+|+....- ..+.+|....
T Consensus 32 pvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~a---kn~Vnfaa~n~i~i~gq~Al~NyStsq- 107 (494)
T KOG1456|consen 32 PVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGA---KNCVNFAADNQIYIAGQQALFNYSTSQ- 107 (494)
T ss_pred ceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccch---hhheehhccCcccccCchhhcccchhh-
Confidence 347899999999999999999999987 2444443332 222333322110 0122221111
Q ss_pred CccccCCCCCCCCCCcEEEEcCC--CCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccc
Q 003463 138 AGTVAGEHPYGEHPSRTLFVRNI--NSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR 215 (818)
Q Consensus 138 ~~~~~g~~~~~e~~srtLfV~NL--P~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~ 215 (818)
++.........++..|.+.=| =+.+|-+-|..+....|+|.+|.+..|.--.|+|+|++.+.|++|..+|||..|.
T Consensus 108 --~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIY 185 (494)
T KOG1456|consen 108 --CIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIY 185 (494)
T ss_pred --hhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhccccccc
Confidence 122222333455666665544 4668999999999999999999988887678999999999999999999998885
Q ss_pred --cccccccccCCCCCCCCCC-----------------------------------------------------------
Q 003463 216 --RRKLDIHFSIPKDNPSDKD----------------------------------------------------------- 234 (818)
Q Consensus 216 --gr~L~V~~a~pk~~~~~~~----------------------------------------------------------- 234 (818)
..+|+|+|++|.+....+.
T Consensus 186 sGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P 265 (494)
T KOG1456|consen 186 SGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPP 265 (494)
T ss_pred ccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCC
Confidence 5789999987753110000
Q ss_pred -------------------CCccceeeecCCCC-CCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHc
Q 003463 235 -------------------LNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL 294 (818)
Q Consensus 235 -------------------~~~~tL~V~NLp~~-vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~L 294 (818)
.....+.|.+|+.. +.-+.|..+|-.||.|.+|++...+.|.|+||+.|..+.++|+..|
T Consensus 266 ~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hL 345 (494)
T KOG1456|consen 266 SRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHL 345 (494)
T ss_pred CCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHh
Confidence 00126889999865 5778999999999999999998888899999999999999999999
Q ss_pred CCCccCCceEEEEecCC
Q 003463 295 NRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 295 nG~~i~Gr~L~V~~a~~ 311 (818)
|+..+.|.+|.|.+++.
T Consensus 346 nn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 346 NNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred ccCccccceEEEeeccc
Confidence 99999999999999863
No 50
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.41 E-value=8.9e-13 Score=128.83 Aligned_cols=78 Identities=24% Similarity=0.453 Sum_probs=71.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..++|||+|||+.+|+++|+++|++||.|++|++ ++++++||||+|.+.++|++|++.||+..|.|++|+|++++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 3468999999999999999999999999999865 45679999999999999999999999999999999999987
Q ss_pred CCc
Q 003463 311 PGG 313 (818)
Q Consensus 311 ~~~ 313 (818)
++.
T Consensus 113 ~~~ 115 (144)
T PLN03134 113 DRP 115 (144)
T ss_pred cCC
Confidence 654
No 51
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.39 E-value=1.2e-11 Score=134.19 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=64.3
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEe--cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~--~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
++|+|+|||.++|++.|++-|..||.|..+++ .++++ +.|+|.++++|++|+..|+|..+.|+.|+|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gksk--GVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSK--GVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccceehhhhhccCCcc--ceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 37999999999999999999999999999887 55555 599999999999999999999999999999873
No 52
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.39 E-value=1.7e-12 Score=126.80 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
...+++|||+|||.+++|++|+++|++||.|.+|.+ +++++|||||+|.+.++|++|++.|++..|.|++|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 345789999999999999999999999999999874 567899999999999999999999999999999999999
Q ss_pred cCCCC
Q 003463 224 SIPKD 228 (818)
Q Consensus 224 a~pk~ 228 (818)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87654
No 53
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.33 E-value=1.5e-12 Score=127.80 Aligned_cols=155 Identities=16% Similarity=0.260 Sum_probs=128.4
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc----ccCccccCCCCccccC--CC
Q 003463 75 DDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAG--EH 145 (818)
Q Consensus 75 ~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g--~~ 145 (818)
..+||++|+..+++.-++++|-+.|.| .+..|..+...+||+|+.|.+.+.|. .++..++-+.++++.. .+
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc
Confidence 468999999999999999999999965 67888889999999999999887664 3444455565555432 23
Q ss_pred CCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEE---E---eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccc
Q 003463 146 PYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTL---Y---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 219 (818)
Q Consensus 146 ~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v---~---~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L 219 (818)
...-....+|||+||.+.++|..|.+.|+.||.+... . .++..+||+||.|.+.+.+.+|++.++|+.+..+++
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~i 169 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPI 169 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCce
Confidence 3333455799999999999999999999999987652 1 467899999999999999999999999999999999
Q ss_pred cccccCCCCC
Q 003463 220 DIHFSIPKDN 229 (818)
Q Consensus 220 ~V~~a~pk~~ 229 (818)
.|.++..+..
T Consensus 170 tv~ya~k~~~ 179 (203)
T KOG0131|consen 170 TVSYAFKKDT 179 (203)
T ss_pred EEEEEEecCC
Confidence 9999876544
No 54
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.31 E-value=4e-11 Score=127.76 Aligned_cols=164 Identities=15% Similarity=0.238 Sum_probs=132.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEE--------E----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTL--------Y----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 217 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v--------~----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr 217 (818)
.-++.|||.|||.++|.+++.++|++||-|..- + ..|+-+|-|.+.|...++++-|++.|++..++|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 345679999999999999999999999987542 2 2577899999999999999999999999999999
Q ss_pred cccccccCCCCC--------C--------------------------CCCCCCccceeeecCCC----CCC-------HH
Q 003463 218 KLDIHFSIPKDN--------P--------------------------SDKDLNQGTLVVFNLDP----SVS-------NE 252 (818)
Q Consensus 218 ~L~V~~a~pk~~--------~--------------------------~~~~~~~~tL~V~NLp~----~vt-------ee 252 (818)
+|+|+.|.-... . ..+....++|.|.|+=. ..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 999987632110 0 00111235888988842 222 46
Q ss_pred HHHHHhhccCCeEEEEe-cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 253 DLRQIFGAYGEVKEIRE-TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 253 dL~~lFs~fG~I~~vr~-~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
+|++-+++||.|.+|.+ ...+.|.+-|.|.+.++|..||+.|+|+.+.||+|..+....+.
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 77788999999999976 45678999999999999999999999999999999998876543
No 55
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.30 E-value=7.8e-12 Score=135.53 Aligned_cols=190 Identities=15% Similarity=0.225 Sum_probs=135.5
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhh-ccccC--ccccCCCCccc------
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSAS-GNGLL--HYSVPNGAGTV------ 141 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~-a~~~~--~~~l~n~~~~~------ 141 (818)
..++||++|.|+.+++.|.+.|.++|.+ .|+.|..+++++||+||+|++.+. ...+. ...+.......
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~r 85 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVSR 85 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccCc
Confidence 4789999999999999999999999987 488899999999999999996542 22211 12222221111
Q ss_pred -cCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccc
Q 003463 142 -AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR 215 (818)
Q Consensus 142 -~g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~ 215 (818)
..........+.+|||++||.+++++++++.|++||.|..+. .+.+.+||+||.|.+.+.+++++. ..-+.|.
T Consensus 86 ~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~ 164 (311)
T KOG4205|consen 86 EDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN 164 (311)
T ss_pred ccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeec
Confidence 111112222466999999999999999999999999887775 367789999999999999999988 5788999
Q ss_pred cccccccccCCCCCCCCCCCCc-cceeeecCCCCCCHHHHHHHhhccCCe
Q 003463 216 RRKLDIHFSIPKDNPSDKDLNQ-GTLVVFNLDPSVSNEDLRQIFGAYGEV 264 (818)
Q Consensus 216 gr~L~V~~a~pk~~~~~~~~~~-~tL~V~NLp~~vteedL~~lFs~fG~I 264 (818)
++.+.|..+.|++......... ......++....+.-.|...|.-|+.+
T Consensus 165 gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~ 214 (311)
T KOG4205|consen 165 GKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPV 214 (311)
T ss_pred CceeeEeeccchhhccccccccccccccccccccccccccchhccccCcc
Confidence 9999999999887543322111 112222344344444455555555544
No 56
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.28 E-value=2.7e-11 Score=134.27 Aligned_cols=156 Identities=18% Similarity=0.284 Sum_probs=124.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE---eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLY---TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~---~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
.--|-+++||+++|++||.++|+.++ |+.+. .+++..|-|||+|.+.+++++|++ .+...+..+-|.|-.+.+++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcc
Confidence 34677899999999999999999986 55554 468899999999999999999999 58888888888887664443
Q ss_pred CCC-------CCCCCccceeeecCCCCCCHHHHHHHhhccCCeEE-EE----ecCCCCceEEEEEcCHHHHHHHHHHcCC
Q 003463 229 NPS-------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IR----ETPHKRHHKFIEFYDVRAAEAALKSLNR 296 (818)
Q Consensus 229 ~~~-------~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~-vr----~~g~srG~aFVeF~d~e~A~~Ai~~LnG 296 (818)
... ........|.+++||+.+|++||.++|+..-.|.. |- -.+++.|-|||+|++.+.|++|+.. |.
T Consensus 88 ~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hr 166 (510)
T KOG4211|consen 88 ADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HR 166 (510)
T ss_pred ccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HH
Confidence 211 11135568999999999999999999998755444 21 2345678999999999999999984 66
Q ss_pred CccCCceEEEEecC
Q 003463 297 SDIAGKRIKLEPSR 310 (818)
Q Consensus 297 ~~i~Gr~L~V~~a~ 310 (818)
..|.-|-|.|-.+.
T Consensus 167 e~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 167 ENIGHRYIEVFRSS 180 (510)
T ss_pred HhhccceEEeehhH
Confidence 77887888887664
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.26 E-value=8.7e-12 Score=104.86 Aligned_cols=66 Identities=36% Similarity=0.634 Sum_probs=61.2
Q ss_pred eeeecCCCCCCHHHHHHHhhccCCeEEEEec----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEE
Q 003463 240 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 305 (818)
Q Consensus 240 L~V~NLp~~vteedL~~lFs~fG~I~~vr~~----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~ 305 (818)
|||+|||.++|+++|+++|++||.|..+++. +..+++|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999988653 45688999999999999999999999999999985
No 58
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=8.3e-12 Score=121.95 Aligned_cols=77 Identities=30% Similarity=0.475 Sum_probs=72.8
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
..+|||+||+..+++.||+.+|..||.|..|.+.....|||||||+|..+|+.|+..|+|+.|.|.+|+|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 56899999999999999999999999999999888889999999999999999999999999999999999987544
No 59
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=6.7e-11 Score=134.21 Aligned_cols=236 Identities=15% Similarity=0.258 Sum_probs=160.3
Q ss_pred cccccccCCCCCChHHHHHhhcCC-----------CcEEEeecCCCCCcccEEEEEecChhhcc---ccCccccCCCCcc
Q 003463 75 DDFDLRGLPSSLEDLEDYDIFGSG-----------GGMELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGAGT 140 (818)
Q Consensus 75 ~e~~V~~Lp~s~~E~el~diF~~~-----------G~i~V~~d~~t~~skG~a~v~f~~~~~a~---~~~~~~l~n~~~~ 140 (818)
..+++.+++..+.+.....+|..- |.-+|.. .....+.++++.|.....+. ........+...+
T Consensus 176 ~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~--~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~ 253 (500)
T KOG0120|consen 176 RRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSV--QLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLK 253 (500)
T ss_pred hhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeee--eecccccceeEEecCCCchhhhhcccchhhCCCCce
Confidence 458899999999999988888763 2212211 12344556677666543221 1111111111000
Q ss_pred ------------------------ccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccE
Q 003463 141 ------------------------VAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGF 191 (818)
Q Consensus 141 ------------------------~~g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~ 191 (818)
.....+........+||++||..+++.+++++.+.||+++... .++.++||
T Consensus 254 ~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~ 333 (500)
T KOG0120|consen 254 IRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGF 333 (500)
T ss_pred ecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccce
Confidence 0111122223456899999999999999999999999987765 35689999
Q ss_pred EEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCCCCCC--------------------CCccceeeecCCC--CC
Q 003463 192 VMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKD--------------------LNQGTLVVFNLDP--SV 249 (818)
Q Consensus 192 AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~--------------------~~~~tL~V~NLp~--~v 249 (818)
||.+|.+......|+..|+|+.+.+++|.|+.+.+........ .....|.+.|+=. ++
T Consensus 334 af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deL 413 (500)
T KOG0120|consen 334 AFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDEL 413 (500)
T ss_pred eeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHh
Confidence 9999999999999999999999999999998875543211111 1112233333310 00
Q ss_pred -CH-------HHHHHHhhccCCeEEEEecCC--------CCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 250 -SN-------EDLRQIFGAYGEVKEIRETPH--------KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 250 -te-------edL~~lFs~fG~I~~vr~~g~--------srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
.+ |+++..+.+||.|..|.+... ..|..||||.+.+++++|..+|+|.++.|+.|...|....
T Consensus 414 kdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 414 KDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred cchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 11 556677889999999965321 3567899999999999999999999999999999997643
No 60
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.25 E-value=3.8e-11 Score=128.80 Aligned_cols=235 Identities=13% Similarity=0.157 Sum_probs=154.7
Q ss_pred cccccCCCCCChHHHHHhhcC----CCcEEEeecCCCCCcccEEEEEecChhhcc---ccCccccCCCC-----------
Q 003463 77 FDLRGLPSSLEDLEDYDIFGS----GGGMELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNGA----------- 138 (818)
Q Consensus 77 ~~V~~Lp~s~~E~el~diF~~----~G~i~V~~d~~t~~skG~a~v~f~~~~~a~---~~~~~~l~n~~----------- 138 (818)
+-.|+|||+-.+.++..+|.- .|++-++.. ..++-.|.+.+.|.+.+.-. +.....+....
T Consensus 63 vRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~-~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge~f 141 (508)
T KOG1365|consen 63 VRARGLPWQSSDQDIARFFKGLNIANGGRALCLN-AQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGEEF 141 (508)
T ss_pred EEecCCCCCcccCCHHHHHhhhhccccceeeeeh-hhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCchhh
Confidence 445999999999999888874 334444432 35666788888888755221 11111111110
Q ss_pred ccc------cCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcC-----CC--EEEEE-eCCCcccEEEEEEccHHHHHH
Q 003463 139 GTV------AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQY-----GD--IRTLY-TACKHRGFVMISYYDIRAART 204 (818)
Q Consensus 139 ~~~------~g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~f-----G~--I~~v~-~~~ksrG~AFV~F~d~e~A~~ 204 (818)
.++ ...........-.|-+++||+++++.++.++|..- |. |.-|. ..++-.|-|||.|..+++|+.
T Consensus 142 ~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~ 221 (508)
T KOG1365|consen 142 LKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQF 221 (508)
T ss_pred eEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHH
Confidence 001 11111111223456779999999999999999622 22 33333 378889999999999999999
Q ss_pred HHHHhcCcccccccccccccCCC---------------------------CCCCCCCCCccceeeecCCCCCCHHHHHHH
Q 003463 205 AMRALQNKPLRRRKLDIHFSIPK---------------------------DNPSDKDLNQGTLVVFNLDPSVSNEDLRQI 257 (818)
Q Consensus 205 Al~~Lng~~l~gr~L~V~~a~pk---------------------------~~~~~~~~~~~tL~V~NLp~~vteedL~~l 257 (818)
|+.+ +...|..|.|.+-.+... ...........+|.+++||++.+.|||.++
T Consensus 222 aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~F 300 (508)
T KOG1365|consen 222 ALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDF 300 (508)
T ss_pred HHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHH
Confidence 9985 555555554443221000 000111223568999999999999999999
Q ss_pred hhccCCeEE---EE----ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 258 FGAYGEVKE---IR----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 258 Fs~fG~I~~---vr----~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
|..|-.-++ |. -.++..|-|||+|.+.++|..|....+++..++|.|.|-.+....
T Consensus 301 lgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~ee 363 (508)
T KOG1365|consen 301 LGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEE 363 (508)
T ss_pred HHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHH
Confidence 998853222 32 246677899999999999999999988888889999998775544
No 61
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.24 E-value=1.6e-11 Score=103.26 Aligned_cols=66 Identities=29% Similarity=0.603 Sum_probs=61.5
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccc
Q 003463 155 LFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 220 (818)
Q Consensus 155 LfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 220 (818)
|||+|||.++|+++|+++|++||.|..+.+ .++.+|+|||+|.+.++|++|++.|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999988873 456899999999999999999999999999999874
No 62
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.23 E-value=7.8e-11 Score=130.63 Aligned_cols=230 Identities=14% Similarity=0.172 Sum_probs=155.5
Q ss_pred cccccccCCCCCChHHHHHhhcCCCcEEEeecCCCCCcccEEEEEecChhhcc---ccCccccCCC----------Cccc
Q 003463 75 DDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGN---GLLHYSVPNG----------AGTV 141 (818)
Q Consensus 75 ~e~~V~~Lp~s~~E~el~diF~~~G~i~V~~d~~t~~skG~a~v~f~~~~~a~---~~~~~~l~n~----------~~~~ 141 (818)
-.+-|++|||+|+++|+.++|++++.-.+++-..+++..|-++|.|...+... +.....+.+. ....
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~ 90 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCGIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEADW 90 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccccc
Confidence 55778999999999999999999886556677778999999999999766432 2211112111 0000
Q ss_pred --cCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEE-E----EeCCCcccEEEEEEccHHHHHHHHHHhcCccc
Q 003463 142 --AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRT-L----YTACKHRGFVMISYYDIRAARTAMRALQNKPL 214 (818)
Q Consensus 142 --~g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~-v----~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l 214 (818)
....+........|-+++||+.||++||.++|+..-.|.. | ...++..|-|||+|.+.+.|++|+.. +...|
T Consensus 91 ~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~i 169 (510)
T KOG4211|consen 91 VMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENI 169 (510)
T ss_pred cccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhh
Confidence 0011112235568999999999999999999996643333 1 12466889999999999999999984 55555
Q ss_pred cccccccccc-----------------------CCCCCCC---------------C------------------------
Q 003463 215 RRRKLDIHFS-----------------------IPKDNPS---------------D------------------------ 232 (818)
Q Consensus 215 ~gr~L~V~~a-----------------------~pk~~~~---------------~------------------------ 232 (818)
..+-|.|-.+ .+..... .
T Consensus 170 GhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~g 249 (510)
T KOG4211|consen 170 GHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFG 249 (510)
T ss_pred ccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccc
Confidence 5444433211 0000000 0
Q ss_pred -----CC---------------------CC-ccceeeecCCCCCCHHHHHHHhhccCCe---EEEEecCCCCceEEEEEc
Q 003463 233 -----KD---------------------LN-QGTLVVFNLDPSVSNEDLRQIFGAYGEV---KEIRETPHKRHHKFIEFY 282 (818)
Q Consensus 233 -----~~---------------------~~-~~tL~V~NLp~~vteedL~~lFs~fG~I---~~vr~~g~srG~aFVeF~ 282 (818)
++ .. ...++.++||+..++.+|..+|+..-.+ .+|..+++..|-|+|+|.
T Consensus 250 s~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~ 329 (510)
T KOG4211|consen 250 SYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFA 329 (510)
T ss_pred ccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecc
Confidence 00 00 0257788999999999999999976443 233346777889999999
Q ss_pred CHHHHHHHHHHcCCCccCCceEEE
Q 003463 283 DVRAAEAALKSLNRSDIAGKRIKL 306 (818)
Q Consensus 283 d~e~A~~Ai~~LnG~~i~Gr~L~V 306 (818)
+.++|..|+. -++..+..+-|.+
T Consensus 330 t~edav~Ams-kd~anm~hrYVEl 352 (510)
T KOG4211|consen 330 TGEDAVGAMG-KDGANMGHRYVEL 352 (510)
T ss_pred cchhhHhhhc-cCCcccCcceeee
Confidence 9999999997 3666666655554
No 63
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.4e-11 Score=117.75 Aligned_cols=77 Identities=26% Similarity=0.516 Sum_probs=73.0
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
.++|||+||+.++++.||..+|..||.|..|.+.....|||||+|++..+|+.|+..|+|..|.|..|.|+++.-..
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 68999999999999999999999999999999988999999999999999999999999999999999999886443
No 64
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.17 E-value=1.8e-10 Score=119.80 Aligned_cols=119 Identities=27% Similarity=0.444 Sum_probs=101.1
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC-
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI- 225 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~- 225 (818)
.++|||+|||.++++++|+++|.+||.|..+.+ +++.+|||||.|.+.++|..|++.+++..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999977762 57899999999999999999999999999999999999954
Q ss_pred ---CCCCCC----------------CCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec
Q 003463 226 ---PKDNPS----------------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET 270 (818)
Q Consensus 226 ---pk~~~~----------------~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~ 270 (818)
++.... ........+++.+++..++..++...|..+|.+..+.+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 222111 011123579999999999999999999999999777653
No 65
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=3.3e-10 Score=101.93 Aligned_cols=81 Identities=23% Similarity=0.407 Sum_probs=73.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe--cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~--~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
-...|||.|||+++|.|+..++|.+||.|..||+ +...+|.|||-|++..+|.+|+..|+|..+.++.|.|-|..+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 3468999999999999999999999999999997 45568999999999999999999999999999999999988766
Q ss_pred ccc
Q 003463 314 ARR 316 (818)
Q Consensus 314 ~r~ 316 (818)
..+
T Consensus 97 ~~~ 99 (124)
T KOG0114|consen 97 AFK 99 (124)
T ss_pred HHH
Confidence 444
No 66
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=6.8e-11 Score=110.07 Aligned_cols=75 Identities=27% Similarity=0.494 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
..++||||+||+..++||+|.+||+++|+|+.|.+ +....|||||+|.+.++|+.|++.+++..+..++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999873 4557899999999999999999999999999999999875
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=1.2e-10 Score=119.29 Aligned_cols=77 Identities=25% Similarity=0.428 Sum_probs=72.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr-----~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
...+|.|.||+.++++++|+++|.+||.|.+|. .++.++|||||.|.++++|++||..|||.-++.-.|+|+|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 456899999999999999999999999999884 588999999999999999999999999999999999999999
Q ss_pred CC
Q 003463 311 PG 312 (818)
Q Consensus 311 ~~ 312 (818)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.12 E-value=1.4e-10 Score=122.78 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=80.3
Q ss_pred cCcccccccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe---cCCCCceEEEEEcCHHH
Q 003463 210 QNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE---TPHKRHHKFIEFYDVRA 286 (818)
Q Consensus 210 ng~~l~gr~L~V~~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~---~g~srG~aFVeF~d~e~ 286 (818)
++....|..+.+..+.. +......++|+|+|||+...+-||+.+|.+||+|.+|.| ...+|||+||+|++.+|
T Consensus 73 ~~~~t~g~~~~~~~st~----s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~d 148 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTN----SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPAD 148 (376)
T ss_pred CCCCCCCCccccCCCCc----CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhh
Confidence 44555566655543322 122224568999999999999999999999999999875 34579999999999999
Q ss_pred HHHHHHHcCCCccCCceEEEEecCCC
Q 003463 287 AEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 287 A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
|++|..+|||..+.||+|.|..+..+
T Consensus 149 adRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 149 ADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHHHHhhcceeeceEEEEeccchh
Confidence 99999999999999999999988654
No 69
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.12 E-value=6.2e-10 Score=119.30 Aligned_cols=172 Identities=20% Similarity=0.309 Sum_probs=135.4
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHh--cCccccccccc
Q 003463 143 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL--QNKPLRRRKLD 220 (818)
Q Consensus 143 g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~L--ng~~l~gr~L~ 220 (818)
+..+....++-.|.|++|-..++|.+|.+.++.||.|..+.. ...+..|.|+|+|++.|++++..- +...+.|+.--
T Consensus 22 ~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~-~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 22 NADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTC-MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEe-ccccceeeeeeccccchhhheehhccCcccccCchhh
Confidence 344555667889999999999999999999999999998854 445678999999999999998632 34556788777
Q ss_pred ccccCCCCCCCCCC---CCcccee--eecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcC
Q 003463 221 IHFSIPKDNPSDKD---LNQGTLV--VFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 295 (818)
Q Consensus 221 V~~a~pk~~~~~~~---~~~~tL~--V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~Ln 295 (818)
+.|+..+......+ ...+.|. |-|--+.+|.+-|..++.+.|+|.+|-+..+..-.|.|||++.+.|++|..+||
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alN 180 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALN 180 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcc
Confidence 77775443322111 1223344 445557899999999999999999998876655579999999999999999999
Q ss_pred CCccC-C-ceEEEEecCCCccc
Q 003463 296 RSDIA-G-KRIKLEPSRPGGAR 315 (818)
Q Consensus 296 G~~i~-G-r~L~V~~a~~~~~r 315 (818)
|..|. | ++|+|+||+|..-+
T Consensus 181 GADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 181 GADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred cccccccceeEEEEecCcceee
Confidence 99886 4 78999999997643
No 70
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=7.4e-11 Score=132.62 Aligned_cols=162 Identities=27% Similarity=0.408 Sum_probs=131.4
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
..+.++|+|-|||..|++++|+.+|+.||+|+.|+.+...+|.+||+|+|.++|++|+++|++.++.|+.|+........
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~~ 151 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARRA 151 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccccc
Confidence 56789999999999999999999999999999999888899999999999999999999999999999988833221110
Q ss_pred C------------------CCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHH
Q 003463 229 N------------------PSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAA 290 (818)
Q Consensus 229 ~------------------~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~A 290 (818)
. .....-....+++- |++..+..-++.+|+.+|.+.. +.++..+..-|++|.+..++..+
T Consensus 152 ~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~ 229 (549)
T KOG4660|consen 152 MGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFS 229 (549)
T ss_pred chhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhc
Confidence 0 00011122345544 9999998888889999999988 88888777899999999999777
Q ss_pred HHHcCCCccCCceEEEEecCCCc
Q 003463 291 LKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 291 i~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
.... |..+.+....+.++.+.+
T Consensus 230 ~~~~-G~~~s~~~~v~t~S~~~g 251 (549)
T KOG4660|consen 230 EPRG-GFLISNSSGVITFSGPGG 251 (549)
T ss_pred ccCC-ceecCCCCceEEecCCCc
Confidence 7744 777788888888887744
No 71
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.10 E-value=2.6e-10 Score=119.98 Aligned_cols=74 Identities=20% Similarity=0.413 Sum_probs=67.7
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEecC--CCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g--~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
.++|||+||++.+|+++|+++|+.||+|++|++.. ..+|||||+|.+.++|+.|+. |+|..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 45899999999999999999999999999998743 357999999999999999996 999999999999999764
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.4e-10 Score=107.97 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=69.4
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr-----~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
...||||+||...++||+|.++|+++|+|+.|- .+....|||||+|...++|+.|++-++|..++.+.|+|.|.-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 456999999999999999999999999999983 455678999999999999999999999999999999999864
Q ss_pred C
Q 003463 311 P 311 (818)
Q Consensus 311 ~ 311 (818)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 73
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=3.4e-10 Score=101.88 Aligned_cols=80 Identities=29% Similarity=0.490 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~--~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
...++.|||+|||.++|.|++.++|.+||.|+.|++ +...+|.|||.|+++.+|++|++.|.|..+.++.|.|.|..+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 345789999999999999999999999999999995 556799999999999999999999999999999999998876
Q ss_pred CC
Q 003463 227 KD 228 (818)
Q Consensus 227 k~ 228 (818)
.+
T Consensus 95 ~~ 96 (124)
T KOG0114|consen 95 ED 96 (124)
T ss_pred HH
Confidence 43
No 74
>smart00362 RRM_2 RNA recognition motif.
Probab=99.07 E-value=5.6e-10 Score=92.62 Aligned_cols=69 Identities=32% Similarity=0.643 Sum_probs=63.0
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCeEEEEecCC---CCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEE
Q 003463 239 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH---KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 307 (818)
Q Consensus 239 tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~---srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~ 307 (818)
+|+|+|||..+++++|+++|++||.|..+++... .+++|||+|.+.++|.+|++.+++..+.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999876433 47999999999999999999999999999999874
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.07 E-value=3.2e-10 Score=96.20 Aligned_cols=66 Identities=35% Similarity=0.644 Sum_probs=58.6
Q ss_pred eeeecCCCCCCHHHHHHHhhccCCeEEEEecCC----CCceEEEEEcCHHHHHHHHHHcCCCccCCceEE
Q 003463 240 LVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 305 (818)
Q Consensus 240 L~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~----srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~ 305 (818)
|||+|||+.+++++|+++|+.||.|..+++... .+++|||+|.+.++|.+|++.+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999976433 478999999999999999999999999999885
No 76
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2.9e-10 Score=120.47 Aligned_cols=79 Identities=23% Similarity=0.400 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe---CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT---ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~---~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
...++|+|.|||....|-||+.+|++||+|.+|.+ .+-+|||+||+|++.+||++|.++|+|..+.||+|.|..+.+
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 34579999999999999999999999999999874 566899999999999999999999999999999999998876
Q ss_pred CC
Q 003463 227 KD 228 (818)
Q Consensus 227 k~ 228 (818)
+-
T Consensus 174 rV 175 (376)
T KOG0125|consen 174 RV 175 (376)
T ss_pred hh
Confidence 53
No 77
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.06 E-value=4.7e-10 Score=118.03 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=68.4
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~--~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
.++|||+|||+.+||++|+++|+.||+|.+|.+ .+..+|||||+|.+.++|+.|+. |+|..|.|+.|.|..+...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 589999999999999999999999999999985 33368999999999999999996 9999999999999987643
No 78
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=4.8e-10 Score=114.82 Aligned_cols=79 Identities=22% Similarity=0.430 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
.+...+|-|.||+.+++|++|++||.+||.|..|+ .++.++|||||.|.+.++|.+||+.|+|.-+..--|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678999999999999999999999999999987 4889999999999999999999999999999999999999
Q ss_pred cCCC
Q 003463 224 SIPK 227 (818)
Q Consensus 224 a~pk 227 (818)
++|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9885
No 79
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.04 E-value=4.7e-10 Score=95.18 Aligned_cols=66 Identities=23% Similarity=0.548 Sum_probs=58.2
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccc
Q 003463 155 LFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 220 (818)
Q Consensus 155 LfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 220 (818)
|||+|||+++++++|+++|+.||.|..+.. .+..+|+|||+|.+.++|++|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999998874 244689999999999999999999888999999874
No 80
>PLN03213 repressor of silencing 3; Provisional
Probab=99.04 E-value=4.2e-10 Score=123.90 Aligned_cols=88 Identities=25% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecC-CCCceEEEEEcCH--HHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP-HKRHHKFIEFYDV--RAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g-~srG~aFVeF~d~--e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
....+|||+||.+.++++||+.+|+.||.|.+|.+.. ..||||||+|.+. .++.+||..|||.++.|+.|+|..|++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3446899999999999999999999999999986521 2289999999987 789999999999999999999999987
Q ss_pred Ccccchhhhccchhcc
Q 003463 312 GGARRNLMLQLNQELE 327 (818)
Q Consensus 312 ~~~r~~~~~ql~~~~~ 327 (818)
. |+..|.+++.
T Consensus 88 ~-----YLeRLkrERe 98 (759)
T PLN03213 88 H-----YLARLKREWE 98 (759)
T ss_pred H-----HHHHHHHHHH
Confidence 4 4555544433
No 81
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.04 E-value=7.4e-10 Score=90.31 Aligned_cols=56 Identities=34% Similarity=0.594 Sum_probs=51.6
Q ss_pred HHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 254 LRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 254 L~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
|+++|++||+|+++.+....+++|||+|.+.++|.+|++.|||..+.|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987666799999999999999999999999999999999986
No 82
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=5.9e-10 Score=109.66 Aligned_cols=77 Identities=30% Similarity=0.466 Sum_probs=70.2
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecC--CCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETP--HKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g--~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
..++|||+|||.++.+.||.++|.+||.|..|.+.. ....||||+|++..+|+.||..-+|..++|++|+|+|++..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 457899999999999999999999999999997643 33579999999999999999999999999999999998765
No 83
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=6.6e-10 Score=113.51 Aligned_cols=76 Identities=22% Similarity=0.421 Sum_probs=66.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
+..-++|||++|++.+..|+|+++|++||+|++.. .++++|||+||+|.|.++|.+|++. .+-.|+||+..+..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 34457999999999999999999999999998876 3789999999999999999999984 45678899888877
Q ss_pred cC
Q 003463 224 SI 225 (818)
Q Consensus 224 a~ 225 (818)
+.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 64
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=98.97 E-value=1.9e-09 Score=89.42 Aligned_cols=69 Identities=30% Similarity=0.580 Sum_probs=62.2
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC---CCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 154 TLFVRNINSNVEDSELRALFEQYGDIRTLYTA---CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 154 tLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~---~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
+|||+|||..+++++|+++|++||.|..+.+. +..+|+|||+|.+.++|++|++.+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999988743 3357999999999999999999999999999888763
No 85
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.96 E-value=6.4e-10 Score=111.20 Aligned_cols=76 Identities=33% Similarity=0.543 Sum_probs=70.4
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
..+|.|.||-+-++.++|+.+|++||.|-+|.| +..++|||||.|.+..+|+.|+.+|+|..|+|+.|+|++|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 458999999999999999999999999999854 778899999999999999999999999999999999998864
Q ss_pred C
Q 003463 312 G 312 (818)
Q Consensus 312 ~ 312 (818)
+
T Consensus 93 g 93 (256)
T KOG4207|consen 93 G 93 (256)
T ss_pred C
Confidence 4
No 86
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.95 E-value=9.8e-10 Score=109.91 Aligned_cols=79 Identities=27% Similarity=0.484 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
+.....+|.|-||-+-++.++|+.+|++||.|-+|++ +..++|||||.|.+..+|+.|+++|+|..|.|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 3445689999999999999999999999999999984 78899999999999999999999999999999999999
Q ss_pred ccCC
Q 003463 223 FSIP 226 (818)
Q Consensus 223 ~a~p 226 (818)
++.-
T Consensus 89 ~ary 92 (256)
T KOG4207|consen 89 MARY 92 (256)
T ss_pred hhhc
Confidence 8863
No 87
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=2.9e-09 Score=111.77 Aligned_cols=93 Identities=30% Similarity=0.411 Sum_probs=80.2
Q ss_pred cccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEEcCHHHHHHHHHHcCC
Q 003463 222 HFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNR 296 (818)
Q Consensus 222 ~~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr-----~~g~srG~aFVeF~d~e~A~~Ai~~LnG 296 (818)
....|..++......-+||||.-|+++++|.+|+..|+.||.|+.|+ ++++++|||||+|+++.+...|.+..+|
T Consensus 86 ~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG 165 (335)
T KOG0113|consen 86 KLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG 165 (335)
T ss_pred HhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC
Confidence 33455555444445567999999999999999999999999999985 5889999999999999999999999999
Q ss_pred CccCCceEEEEecCCCcc
Q 003463 297 SDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 297 ~~i~Gr~L~V~~a~~~~~ 314 (818)
..|+|+.|.|.+-+....
T Consensus 166 ~~Idgrri~VDvERgRTv 183 (335)
T KOG0113|consen 166 IKIDGRRILVDVERGRTV 183 (335)
T ss_pred ceecCcEEEEEecccccc
Confidence 999999999999775543
No 88
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.93 E-value=4.8e-09 Score=87.44 Aligned_cols=70 Identities=39% Similarity=0.672 Sum_probs=64.0
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCeEEEEecCC----CCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 239 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH----KRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 239 tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~----srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
+|+|+|||..+++++|+++|+.||.|..+.+... .+++|||+|.+.++|..|++.+++..+.|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999876443 378999999999999999999999999999999874
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.92 E-value=2.3e-09 Score=112.50 Aligned_cols=79 Identities=27% Similarity=0.476 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
...+|-+||||.-|+++++|.+|+..|+.||+|+.|. ++++++|||||+|++..+...|.+..+|..|.|+.|-|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 3457889999999999999999999999999999987 58999999999999999999999999999999999998
Q ss_pred cccC
Q 003463 222 HFSI 225 (818)
Q Consensus 222 ~~a~ 225 (818)
.+-.
T Consensus 176 DvER 179 (335)
T KOG0113|consen 176 DVER 179 (335)
T ss_pred Eecc
Confidence 8754
No 90
>smart00360 RRM RNA recognition motif.
Probab=98.91 E-value=4.3e-09 Score=86.86 Aligned_cols=66 Identities=33% Similarity=0.649 Sum_probs=59.6
Q ss_pred eecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEE
Q 003463 242 VFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 307 (818)
Q Consensus 242 V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~ 307 (818)
|+|||..+++++|+++|++||.|..+++. +..+++|||+|.+.++|.+|++.|++..+.|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999998753 3447899999999999999999999999999999874
No 91
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.90 E-value=4.6e-09 Score=109.06 Aligned_cols=73 Identities=22% Similarity=0.322 Sum_probs=66.1
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEec--CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~--g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..+|+|+||++.+|+++|+++|+.||+|.+|++. +..+++|||+|.++++|+.|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 3589999999999999999999999999999863 3456899999999999999995 99999999999998764
No 92
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.1e-09 Score=110.38 Aligned_cols=81 Identities=27% Similarity=0.505 Sum_probs=74.6
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..++|||++|-.++++.-|...|=+||.|+.|.+ +.+.|||+||+|.-.|+|..||..||+.++.||.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4579999999999999999999999999999964 56789999999999999999999999999999999999999
Q ss_pred CCcccc
Q 003463 311 PGGARR 316 (818)
Q Consensus 311 ~~~~r~ 316 (818)
|...+.
T Consensus 89 P~kike 94 (298)
T KOG0111|consen 89 PEKIKE 94 (298)
T ss_pred CccccC
Confidence 976543
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=98.88 E-value=4e-09 Score=116.30 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=84.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-CCCcccEEEEEEccH--HHHHHHHHHhcCcccccccccccccCC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-ACKHRGFVMISYYDI--RAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-~~ksrG~AFV~F~d~--e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
....+|||+||++++++++|+.+|..||.|..|.+ ..+.||||||+|.+. .++.+||..|+|..+.|+.|+|..+++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34579999999999999999999999999999884 223499999999987 789999999999999999999998866
Q ss_pred CCCC-------CCCCCCccceeeecCCCC-CCHHHHHHHhhccCCeEEEE
Q 003463 227 KDNP-------SDKDLNQGTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIR 268 (818)
Q Consensus 227 k~~~-------~~~~~~~~tL~V~NLp~~-vteedL~~lFs~fG~I~~vr 268 (818)
.-.. ........++. |+.. .....|+-+|-+.++|+.+-
T Consensus 88 ~YLeRLkrEReea~s~~~~~~k---l~k~~~e~~qLnifFPrLrKvKslP 134 (759)
T PLN03213 88 HYLARLKREWEAASSTSDNTIK---APSDSPPATHLNIFFPRLRKVKAMP 134 (759)
T ss_pred HHHHHHHHHHHHhhcccccccc---ccccCCccceeeEeccccccccccc
Confidence 3110 00001111221 2221 23345677777777777663
No 94
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.6e-09 Score=109.14 Aligned_cols=80 Identities=26% Similarity=0.508 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
..|+|||++|..+|+|.-|...|-.||+|..|.+ +.++|||+||+|.-.|+|..||..|++.+|.||.|+|.++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4689999999999999999999999999999983 67899999999999999999999999999999999999999
Q ss_pred CCCCC
Q 003463 226 PKDNP 230 (818)
Q Consensus 226 pk~~~ 230 (818)
|.+..
T Consensus 89 P~kik 93 (298)
T KOG0111|consen 89 PEKIK 93 (298)
T ss_pred Ccccc
Confidence 87643
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.85 E-value=5.8e-09 Score=108.29 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=66.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~--~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
..+|||+||++.+|+++|+++|+.||+|.+|++ .++.+++|||+|++.++|+.|+. |+|..|.+++|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 479999999999999999999999999999984 45667899999999999999996 99999999999987643
No 96
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=3.7e-09 Score=99.39 Aligned_cols=78 Identities=22% Similarity=0.397 Sum_probs=70.8
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
.....|||.++....|+++|.+.|..||+|+.+.+ ++-.+|||+|+|++.++|++|+.+|||..+.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34458999999999999999999999999999954 5667999999999999999999999999999999999998
Q ss_pred CCC
Q 003463 310 RPG 312 (818)
Q Consensus 310 ~~~ 312 (818)
-.+
T Consensus 150 Fv~ 152 (170)
T KOG0130|consen 150 FVK 152 (170)
T ss_pred Eec
Confidence 543
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.83 E-value=1.2e-08 Score=85.11 Aligned_cols=70 Identities=34% Similarity=0.652 Sum_probs=63.0
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCC----CcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 154 TLFVRNINSNVEDSELRALFEQYGDIRTLYTAC----KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 154 tLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~----ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
+|+|+|||..+++++|+++|+.||.|..+.+.. ..+|+|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999987432 3489999999999999999999999999999988764
No 98
>smart00360 RRM RNA recognition motif.
Probab=98.83 E-value=8.5e-09 Score=85.05 Aligned_cols=66 Identities=32% Similarity=0.584 Sum_probs=59.4
Q ss_pred EcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 157 VRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 157 V~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
|+|||..+++++|+++|++||.|..+.+ +++++|+|||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999988874 34568999999999999999999999999999988763
No 99
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.81 E-value=7.8e-09 Score=84.26 Aligned_cols=56 Identities=23% Similarity=0.591 Sum_probs=50.7
Q ss_pred HHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 169 LRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 169 Lr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
|+++|++||+|..+.+..+.+++|||+|.+.++|++|++.|++..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999875555799999999999999999999999999999999875
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.80 E-value=2.6e-08 Score=103.55 Aligned_cols=75 Identities=36% Similarity=0.625 Sum_probs=69.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
..+|||+|||.++|+++|+++|..||.|..+++ ++..+|+|||+|.+.++|..|+..++|..+.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 589999999999999999999999999987753 567899999999999999999999999999999999999765
No 101
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=1e-08 Score=104.96 Aligned_cols=78 Identities=27% Similarity=0.352 Sum_probs=67.7
Q ss_pred CCccceeeecCCCCCCHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 235 LNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 235 ~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr-----~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
..-.+|||+||++.++.|+|++.|++||+|++.. .++++|||+||+|.|.++|.+|++.- .-.|+||+..|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchh
Confidence 3446899999999999999999999999999874 47889999999999999999999843 45789999999887
Q ss_pred CCCc
Q 003463 310 RPGG 313 (818)
Q Consensus 310 ~~~~ 313 (818)
.-+.
T Consensus 89 ~lg~ 92 (247)
T KOG0149|consen 89 SLGG 92 (247)
T ss_pred hhcC
Confidence 6644
No 102
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=1.1e-09 Score=107.77 Aligned_cols=75 Identities=23% Similarity=0.422 Sum_probs=69.5
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr-----~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
...-|||+|||+++||.||..+|++||+|+.|. -||+++||||+.|+|.++..-|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 456799999999999999999999999999984 388999999999999999999999999999999999997653
No 103
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=6.6e-09 Score=122.05 Aligned_cols=159 Identities=21% Similarity=0.365 Sum_probs=138.3
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC----CCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA----CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~----~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
...++|||++||+..+++.+|+..|..+|.|..|.+. +....|+||.|.+...+-.|...+.+..|..-.+++.+.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 3457899999999999999999999999999998753 334559999999999999999999999998777777777
Q ss_pred CCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCC--c
Q 003463 225 IPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG--K 302 (818)
Q Consensus 225 ~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G--r 302 (818)
.++. .....+++++|...+....|...|..||.|..|.+. +..-||+|.|++...|..|...|.|..|+| +
T Consensus 449 ~~ks------t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~-hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~ 521 (975)
T KOG0112|consen 449 QPKS------TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR-HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPR 521 (975)
T ss_pred cccc------ccceeeccCCCCCCChHHHHHHHhhccCcceeeecc-cCCcceeeecccCccchhhHHHHhcCcCCCCCc
Confidence 6532 345579999999999999999999999999999874 445699999999999999999999999997 8
Q ss_pred eEEEEecCCCcc
Q 003463 303 RIKLEPSRPGGA 314 (818)
Q Consensus 303 ~L~V~~a~~~~~ 314 (818)
+|+|.|+.+...
T Consensus 522 r~rvdla~~~~~ 533 (975)
T KOG0112|consen 522 RLRVDLASPPGA 533 (975)
T ss_pred ccccccccCCCC
Confidence 899999987654
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.73 E-value=2e-08 Score=113.63 Aligned_cols=78 Identities=28% Similarity=0.420 Sum_probs=73.0
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr-----~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
..+||+|+|+++++++|..+|+..|.|.+++ .+++.+||||++|.+.++|.+|++.|||.++.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 6899999999999999999999999999986 47889999999999999999999999999999999999999876
Q ss_pred ccc
Q 003463 313 GAR 315 (818)
Q Consensus 313 ~~r 315 (818)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 544
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=9.7e-08 Score=107.15 Aligned_cols=141 Identities=18% Similarity=0.294 Sum_probs=103.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-------CCCccc---EEEEEEccHHHHHHHHHHhcCcccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-------ACKHRG---FVMISYYDIRAARTAMRALQNKPLRRRKL 219 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-------~~ksrG---~AFV~F~d~e~A~~Al~~Lng~~l~gr~L 219 (818)
.-+++|||++||++++|++|...|..||.+..-.. ....+| |+|+.|+++..++.-+.+... ...++
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 45789999999999999999999999998764321 112456 999999999999887765322 22222
Q ss_pred cccccCCCCC-------------------CCCCCCCccceeeecCCCCCCHHHHHHHhh-ccCCeEEEEec-----CCCC
Q 003463 220 DIHFSIPKDN-------------------PSDKDLNQGTLVVFNLDPSVSNEDLRQIFG-AYGEVKEIRET-----PHKR 274 (818)
Q Consensus 220 ~V~~a~pk~~-------------------~~~~~~~~~tL~V~NLp~~vteedL~~lFs-~fG~I~~vr~~-----g~sr 274 (818)
.++.+.+... ....-...+||||++||.-++.++|..+|+ -||.|..+-|+ +-.+
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 2222221111 111112457999999999999999999999 69999887543 2368
Q ss_pred ceEEEEEcCHHHHHHHHHH
Q 003463 275 HHKFIEFYDVRAAEAALKS 293 (818)
Q Consensus 275 G~aFVeF~d~e~A~~Ai~~ 293 (818)
|-|-|.|.+..+-.+||.+
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 8999999999999999973
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.70 E-value=1.9e-08 Score=113.85 Aligned_cols=76 Identities=24% Similarity=0.438 Sum_probs=71.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
+.|||+|||++++|++|..+|+..|.|.+++ .+++.+||||++|.+.++|+.|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999988 48899999999999999999999999999999999999998654
Q ss_pred C
Q 003463 228 D 228 (818)
Q Consensus 228 ~ 228 (818)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 107
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.67 E-value=3.7e-08 Score=100.60 Aligned_cols=75 Identities=28% Similarity=0.576 Sum_probs=70.6
Q ss_pred ceeeecCCCCCCHHHHHH----HhhccCCeEEEEe--cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 239 TLVVFNLDPSVSNEDLRQ----IFGAYGEVKEIRE--TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 239 tL~V~NLp~~vteedL~~----lFs~fG~I~~vr~--~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
||||.||+..+..++|+. +|++||+|.+|.. +++.+|.|||.|.+.+.|..|+++|+|..+.|+.++|.||+.+
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 999999999999999998 9999999999965 5678999999999999999999999999999999999999876
Q ss_pred c
Q 003463 313 G 313 (818)
Q Consensus 313 ~ 313 (818)
.
T Consensus 91 s 91 (221)
T KOG4206|consen 91 S 91 (221)
T ss_pred c
Confidence 5
No 108
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=2.5e-08 Score=93.89 Aligned_cols=77 Identities=18% Similarity=0.486 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
..-.|||.++...++|++|.+.|..||+|+.+. .++-.+|||+|+|.+.++|+.|+..+||..|.+++|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 345899999999999999999999999999987 367789999999999999999999999999999999999985
Q ss_pred CC
Q 003463 226 PK 227 (818)
Q Consensus 226 pk 227 (818)
-+
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 43
No 109
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=4.1e-08 Score=101.59 Aligned_cols=97 Identities=20% Similarity=0.348 Sum_probs=81.7
Q ss_pred cccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHH
Q 003463 216 RRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAAL 291 (818)
Q Consensus 216 gr~L~V~~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai 291 (818)
.|+|.|+.+...... ..+++|||+-|.+.-.|||++.+|.+||.|.+|.+ ++.+||+|||.|.+..+|..||
T Consensus 2 nrpiqvkpadsesrg----~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG----GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCC----ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHH
Confidence 467788776654332 25678999999999999999999999999999965 5678999999999999999999
Q ss_pred HHcCCC-ccCC--ceEEEEecCCCcccc
Q 003463 292 KSLNRS-DIAG--KRIKLEPSRPGGARR 316 (818)
Q Consensus 292 ~~LnG~-~i~G--r~L~V~~a~~~~~r~ 316 (818)
..|+|. .+.| ..|.|+|+...++|.
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERT 105 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHH
Confidence 999996 5555 789999998877664
No 110
>smart00361 RRM_1 RNA recognition motif.
Probab=98.63 E-value=7.8e-08 Score=82.30 Aligned_cols=57 Identities=33% Similarity=0.513 Sum_probs=50.5
Q ss_pred HHHHHHHhh----ccCCeEEEE---e---c--CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEE
Q 003463 251 NEDLRQIFG----AYGEVKEIR---E---T--PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 307 (818)
Q Consensus 251 eedL~~lFs----~fG~I~~vr---~---~--g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~ 307 (818)
+++|+++|+ +||.|.+|. + + +.++|+|||+|.+.++|.+|++.|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678899998 999999874 2 2 6679999999999999999999999999999999863
No 111
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.62 E-value=4.8e-09 Score=103.22 Aligned_cols=75 Identities=20% Similarity=0.435 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
.+.-|||+|||++.||.||.-.|++||+|..|. .+|+++||||+.|+|.++..-|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 467899999999999999999999999999986 489999999999999999999999999999999999997653
No 112
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.57 E-value=1.3e-07 Score=107.94 Aligned_cols=161 Identities=20% Similarity=0.354 Sum_probs=129.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC-----------C-CEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQY-----------G-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 218 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~f-----------G-~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~ 218 (818)
..+.++|+++|..++++.+..+|..- | .|..+.+ +..+.|||++|.+.++|..|+. +++..+.|+.
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-n~~~nfa~ie~~s~~~at~~~~-~~~~~f~g~~ 251 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-NLEKNFAFIEFRSISEATEAMA-LDGIIFEGRP 251 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-cccccceeEEecCCCchhhhhc-ccchhhCCCC
Confidence 35789999999999999999998743 3 2566654 5678999999999999999998 7888888887
Q ss_pred ccccccCCCC-------------------CCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCC
Q 003463 219 LDIHFSIPKD-------------------NPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKR 274 (818)
Q Consensus 219 L~V~~a~pk~-------------------~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~sr 274 (818)
+++.--.... ...........++|++||..+++++++++...||.++..++ ++.++
T Consensus 252 ~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~sk 331 (500)
T KOG0120|consen 252 LKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSK 331 (500)
T ss_pred ceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccccc
Confidence 7654211100 00001112358999999999999999999999999887642 56789
Q ss_pred ceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 275 HHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 275 G~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
||||.+|-+......|+..|||..+++++|.|..+-.+.
T Consensus 332 g~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~ 370 (500)
T KOG0120|consen 332 GFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGA 370 (500)
T ss_pred ceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccc
Confidence 999999999999999999999999999999999987654
No 113
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.56 E-value=1e-07 Score=110.63 Aligned_cols=107 Identities=28% Similarity=0.408 Sum_probs=82.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCCC
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPS 231 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~ 231 (818)
+|||||+.|+..++|.||.++|+.||+|.+|.+ ...+|+|||.+....+|++|+.+|.+..+.++.|+|.|+.-+.-..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~l-i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIIL-IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEee-ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 689999999999999999999999999999975 4479999999999999999999999999999999999997655332
Q ss_pred C-CCCCccceeeecCCCCCCHHHHHHHhh
Q 003463 232 D-KDLNQGTLVVFNLDPSVSNEDLRQIFG 259 (818)
Q Consensus 232 ~-~~~~~~tL~V~NLp~~vteedL~~lFs 259 (818)
+ ++.-+-.|=|.-||++.-.+||+.+++
T Consensus 500 e~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 500 EYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred hhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 1 111112233444565433333554443
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.55 E-value=1.3e-07 Score=109.82 Aligned_cols=79 Identities=29% Similarity=0.410 Sum_probs=74.3
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcccc
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARR 316 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~r~ 316 (818)
.+||||++|+..+++.||..+|+.||.|.+|.+. .+++||||.+..+.+|.+|+.+|+...+.++.|+|.|+..++-+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 3699999999999999999999999999999886 468899999999999999999999999999999999999888765
No 115
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.45 E-value=1.6e-07 Score=95.06 Aligned_cols=143 Identities=20% Similarity=0.307 Sum_probs=115.5
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
...+||||.|+-..|+|+-|.++|-+-|+|..|.+ ..+.+ ||||.|.++-.+.-|++.++|..+.++.++|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34689999999999999999999999999999884 33344 99999999999999999999999999988887532
Q ss_pred CCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCC
Q 003463 226 PKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 301 (818)
Q Consensus 226 pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G 301 (818)
-.. .. -|+..++++.+...|+.-|.+..+|+ +++++.++|+.+....+.-.|+....+..+.-
T Consensus 86 G~s--------ha-----pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 86 GNS--------HA-----PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred CCC--------cc-----hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 111 00 16677899999999999999988865 45577899999988888888888777766655
Q ss_pred ceEEE
Q 003463 302 KRIKL 306 (818)
Q Consensus 302 r~L~V 306 (818)
+++.+
T Consensus 153 ~~~~~ 157 (267)
T KOG4454|consen 153 KKVTI 157 (267)
T ss_pred CCccc
Confidence 55444
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=98.44 E-value=3.7e-07 Score=78.14 Aligned_cols=56 Identities=20% Similarity=0.374 Sum_probs=49.8
Q ss_pred HHHHHHHhh----cCCCEEEEE---e---C--CCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 166 DSELRALFE----QYGDIRTLY---T---A--CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 166 EeeLr~lFs----~fG~I~~v~---~---~--~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
+++|+++|+ +||.|.++. + + +.++|||||+|.+.++|.+|++.|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678888888 999999874 2 2 678999999999999999999999999999999875
No 117
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.41 E-value=4.8e-07 Score=97.16 Aligned_cols=87 Identities=23% Similarity=0.440 Sum_probs=73.1
Q ss_pred cccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHh-cCccccccc
Q 003463 140 TVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRAL-QNKPLRRRK 218 (818)
Q Consensus 140 ~~~g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~L-ng~~l~gr~ 218 (818)
...-..+..+...++|||++|-..++|.+|++.|.+||+|+++.+. ..+++|||+|.+.++|+.|.+++ +...|.|++
T Consensus 216 ~~~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 216 SAGTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred cccccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3334455566677999999999999999999999999999999853 35679999999999999998864 556679999
Q ss_pred ccccccCCC
Q 003463 219 LDIHFSIPK 227 (818)
Q Consensus 219 L~V~~a~pk 227 (818)
|+|.|..++
T Consensus 295 l~i~Wg~~~ 303 (377)
T KOG0153|consen 295 LKIKWGRPK 303 (377)
T ss_pred EEEEeCCCc
Confidence 999999883
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=6.5e-08 Score=113.57 Aligned_cols=139 Identities=14% Similarity=0.229 Sum_probs=118.9
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk 227 (818)
.++||+||+..+.+++|...|..+|.+..+. ..++.+|+|||.|...+++.+|+....+..+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------ 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------ 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh------------
Confidence 4789999999999999999999999877765 35778999999999999999999854443332
Q ss_pred CCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCce
Q 003463 228 DNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR 303 (818)
Q Consensus 228 ~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~ 303 (818)
...|+|.|+|+..|.++|+.++..+|.+++.++ .++.+|.|+|.|.+..+|.+++...++..+.-+.
T Consensus 736 ---------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 736 ---------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred ---------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 236899999999999999999999999999864 4677899999999999999999988888888777
Q ss_pred EEEEecCCC
Q 003463 304 IKLEPSRPG 312 (818)
Q Consensus 304 L~V~~a~~~ 312 (818)
+.|..+.|.
T Consensus 807 ~~v~vsnp~ 815 (881)
T KOG0128|consen 807 GEVQVSNPE 815 (881)
T ss_pred ccccccCCc
Confidence 777776553
No 119
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.33 E-value=1.2e-06 Score=94.33 Aligned_cols=78 Identities=35% Similarity=0.509 Sum_probs=68.5
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHc-CCCccCCceEEEEecCC
Q 003463 233 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL-NRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 233 ~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~L-nG~~i~Gr~L~V~~a~~ 311 (818)
++..-.+|||++|-..+++.+|++.|-+||+|+.|++... +++|||+|.+.++|+.|..++ |...|.|++|+|.|+++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 4455679999999999999999999999999999998654 569999999999999988765 55688999999999988
No 120
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.28 E-value=1.2e-06 Score=90.42 Aligned_cols=143 Identities=17% Similarity=0.302 Sum_probs=102.8
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcEEEeecCCCCCcccEEEEEecChhhccccCcc----ccCCCC-----------
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEPQESLSMSMSKISISDSASGNGLLHY----SVPNGA----------- 138 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i~V~~d~~t~~skG~a~v~f~~~~~a~~~~~~----~l~n~~----------- 138 (818)
|.+++|++|++...+.++..+|..+|.+.. -....||+||.|.+.-.|...+.. .+....
T Consensus 1 m~rv~vg~~~~~~~~~d~E~~f~~yg~~~d-----~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 1 MPRVYIGRLPYRARERDVERFFKGYGKIPD-----ADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CCceeecccCCccchhHHHHHHhhcccccc-----ceeecccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 457899999999999999999999998721 112336677777766554422211 111000
Q ss_pred --ccc-cC----CCC---CCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHH
Q 003463 139 --GTV-AG----EHP---YGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRA 208 (818)
Q Consensus 139 --~~~-~g----~~~---~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~ 208 (818)
+.. .+ ... ......+.|+|.+++..+.+.+|.+.|..+|.+..... ..+++||+|...++|.+|+..
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~ 152 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEK 152 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchh
Confidence 000 01 000 11234568899999999999999999999999954432 678999999999999999999
Q ss_pred hcCccccccccccccc
Q 003463 209 LQNKPLRRRKLDIHFS 224 (818)
Q Consensus 209 Lng~~l~gr~L~V~~a 224 (818)
|++..+.++.|.+...
T Consensus 153 l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 153 LDGKKLNGRRISVEKN 168 (216)
T ss_pred ccchhhcCceeeeccc
Confidence 9999999999999543
No 121
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.26 E-value=1.2e-06 Score=95.02 Aligned_cols=163 Identities=20% Similarity=0.290 Sum_probs=128.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
...+++|++++...+.+.++..++..+|.+.... -...++|++.|.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3468999999999999999999999999766554 34568999999999999999999954444555555444333
Q ss_pred CCCCC-------CCCCCCCcccee-eecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHH
Q 003463 225 IPKDN-------PSDKDLNQGTLV-VFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAAL 291 (818)
Q Consensus 225 ~pk~~-------~~~~~~~~~tL~-V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai 291 (818)
..... ..... ...+++ |.+|+..+++++|+..|..+|.|..+++ ++..+++|+|+|.+..++..|+
T Consensus 166 ~~~~~~~~n~~~~~~~~-~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSG-PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccC-ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 22221 11111 223555 9999999999999999999999999975 4567899999999999999999
Q ss_pred HHcCCCccCCceEEEEecCCCcc
Q 003463 292 KSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 292 ~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
.. ....+.++.+.+.+..+...
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred hc-ccCcccCcccccccCCCCcc
Confidence 87 88899999999999887653
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.2e-06 Score=93.88 Aligned_cols=76 Identities=28% Similarity=0.446 Sum_probs=69.9
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSR 310 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~ 310 (818)
..+.|||--|.+-+|++||.-+|+.||+|+.|.+ ++.+-.||||+|++.+++++|.-+|++..|..++|.|.|+.
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4568999999999999999999999999999854 56677899999999999999999999999999999999986
Q ss_pred C
Q 003463 311 P 311 (818)
Q Consensus 311 ~ 311 (818)
.
T Consensus 318 S 318 (479)
T KOG0415|consen 318 S 318 (479)
T ss_pred h
Confidence 4
No 123
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.20 E-value=1.3e-06 Score=90.56 Aligned_cols=129 Identities=17% Similarity=0.181 Sum_probs=101.9
Q ss_pred CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCCC--CCCCCccceeeecCCCCCCHHHHHHHhhccC
Q 003463 185 ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPS--DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYG 262 (818)
Q Consensus 185 ~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~--~~~~~~~tL~V~NLp~~vteedL~~lFs~fG 262 (818)
.+..++++|+.|.....-.++-..-+++.+.-+.+++.-.....++. +.+.++-+||.+.|..+++++-|...|.+|-
T Consensus 136 p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfp 215 (290)
T KOG0226|consen 136 PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFP 215 (290)
T ss_pred CCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhcc
Confidence 46678999999999888888877667777776666654443333322 3345567899999999999999999999985
Q ss_pred Ce-----EEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 263 EV-----KEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 263 ~I-----~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
.. ..-+-+++++||+||.|.+..++..|+++|+|+.++.+.|++.-+..+.
T Consensus 216 sf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 216 SFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred chhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 33 2224578999999999999999999999999999999999987766554
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.15 E-value=5.3e-06 Score=83.86 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=71.5
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhcc-CCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEE
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAY-GEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 307 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~f-G~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~ 307 (818)
....+.++|..+|.-+.+.+|..+|.+| |.|..+|+ ||+++|||||+|++.+.|+-|-+.||+..+.++.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3445689999999999999999999998 77777765 88999999999999999999999999999999999999
Q ss_pred ecCCC
Q 003463 308 PSRPG 312 (818)
Q Consensus 308 ~a~~~ 312 (818)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 98776
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.3e-06 Score=91.84 Aligned_cols=77 Identities=21% Similarity=0.419 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
.|...|||..|.+-+|+++|.-+|+.||.|.+|.+ ++.+.-||||+|++.+++++|.-+|++..|..+.|.|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 46789999999999999999999999999999873 6778889999999999999999999999999999999998
Q ss_pred CC
Q 003463 225 IP 226 (818)
Q Consensus 225 ~p 226 (818)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 64
No 126
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.09 E-value=2.5e-05 Score=84.25 Aligned_cols=154 Identities=14% Similarity=0.198 Sum_probs=105.2
Q ss_pred cCccccccccCCCCCChHHHHHhhcCCCcEE---------Ee-ecCCCCCcccEEEEEecChhh---cc------ccCcc
Q 003463 72 GIMDDFDLRGLPSSLEDLEDYDIFGSGGGME---------LE-GEPQESLSMSMSKISISDSAS---GN------GLLHY 132 (818)
Q Consensus 72 ~v~~e~~V~~Lp~s~~E~el~diF~~~G~i~---------V~-~d~~t~~skG~a~v~f~~~~~---a~------~~~~~ 132 (818)
.+-+.+||.+||.+++..+..++|+.+|.|- |. .....+.-+|=+.+.|...+. |. .+.+.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 3567899999999999999999999999871 11 112236667766666664432 11 11111
Q ss_pred ccC---------CC---Ccc-----------------ccC-----CCCCCCCCCcEEEEcCCCC----CCc-------HH
Q 003463 133 SVP---------NG---AGT-----------------VAG-----EHPYGEHPSRTLFVRNINS----NVE-------DS 167 (818)
Q Consensus 133 ~l~---------n~---~~~-----------------~~g-----~~~~~e~~srtLfV~NLP~----~vT-------Ee 167 (818)
.+. +. ..+ ..+ ..+......++|.++|+=. ..+ ++
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlke 291 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKE 291 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHH
Confidence 110 00 000 001 1123334567999999831 222 35
Q ss_pred HHHHHhhcCCCEEEEEe-CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 168 ELRALFEQYGDIRTLYT-ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 168 eLr~lFs~fG~I~~v~~-~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
+|++-.++||.|+.|.+ .....|.+-|.|.+.++|..||+.|+|+.+.||.|......
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 67777899999999986 45678999999999999999999999999999999877654
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.07 E-value=6e-06 Score=92.99 Aligned_cols=74 Identities=24% Similarity=0.466 Sum_probs=67.6
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEe-----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE-----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~-----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
++|+|.+|...+...||+.||++||+|+-.++ ++..++|+||++.+.++|.++|..|+.++|.|+.|.|+.++.
T Consensus 406 RNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 406 RNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 58999999999999999999999999988764 344578999999999999999999999999999999998875
No 128
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.07 E-value=8.9e-06 Score=82.28 Aligned_cols=79 Identities=18% Similarity=0.377 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcC-CCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQY-GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~f-G~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
......+||..+|.-+-+.+|..+|.+| |.|+.++ .+|.++|||||+|++.+.|+-|-+.||+..+.++-|.|+
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3456789999999999999999999998 6777766 488999999999999999999999999999999999999
Q ss_pred ccCCC
Q 003463 223 FSIPK 227 (818)
Q Consensus 223 ~a~pk 227 (818)
+-.|.
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 87654
No 129
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=4.5e-05 Score=86.16 Aligned_cols=142 Identities=17% Similarity=0.191 Sum_probs=102.4
Q ss_pred hhhhhcCccccccccCCCCCChHHHHHhhcCCCcEEEeecC-CC----CCccc---EEEEEecChhhcc--------ccC
Q 003463 67 DELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGMELEGEP-QE----SLSMS---MSKISISDSASGN--------GLL 130 (818)
Q Consensus 67 ddl~~~v~~e~~V~~Lp~s~~E~el~diF~~~G~i~V~~d~-~t----~~skG---~a~v~f~~~~~a~--------~~~ 130 (818)
+.........+||++||++++|.++...|..||.+.|+-.- .+ .-.+| |.|+-|.+..... ...
T Consensus 252 ~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~ 331 (520)
T KOG0129|consen 252 GYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEG 331 (520)
T ss_pred CCCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhccc
Confidence 34555567899999999999999999999999999776541 11 12446 9999998755321 111
Q ss_pred cccc-------CCCCcc----------ccCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhh-cCCCEEEEEeC-----CC
Q 003463 131 HYSV-------PNGAGT----------VAGEHPYGEHPSRTLFVRNINSNVEDSELRALFE-QYGDIRTLYTA-----CK 187 (818)
Q Consensus 131 ~~~l-------~n~~~~----------~~g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs-~fG~I~~v~~~-----~k 187 (818)
.+.+ ...... ........-++.+||||++||.-++.++|..+|+ -||.|..+-+. +-
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 1111 111000 0112333456889999999999999999999999 89999887642 23
Q ss_pred cccEEEEEEccHHHHHHHHHH
Q 003463 188 HRGFVMISYYDIRAARTAMRA 208 (818)
Q Consensus 188 srG~AFV~F~d~e~A~~Al~~ 208 (818)
.+|-|-|+|.+..+-.+||.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 689999999999999999984
No 130
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.97 E-value=5.3e-06 Score=83.98 Aligned_cols=90 Identities=21% Similarity=0.368 Sum_probs=60.5
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEee--eccc--ccceeEEEEEecCCcccHHHHHHHhcCCcccCCC
Q 003463 652 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP--IDFK--NKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFN 727 (818)
Q Consensus 652 d~rTtvMirNIPn~~~~~~l~~~id~~~~~~ydf~Ylp--~d~~--~~~n~gyafin~~~~~~~~~f~~~f~g~~w~~~~ 727 (818)
..++.|.||++|..+|++.+++.|+......++|-|++ .+.. ..+-...|||||.+.+++..|.+.|+|+.|..-.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46789999999999999999998887666665566665 3222 3344567999999999999999999999998654
Q ss_pred C-ccEEEEEeeeccc
Q 003463 728 S-EKVASLAYARIQG 741 (818)
Q Consensus 728 s-~k~~~~~~A~iQg 741 (818)
. .-++.|.||--|-
T Consensus 85 g~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 85 GNEYPAVVEFAPYQK 99 (176)
T ss_dssp S-EEEEEEEE-SS--
T ss_pred CCCcceeEEEcchhc
Confidence 3 4889999998764
No 131
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.96 E-value=2.2e-05 Score=80.01 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=65.7
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEE--EecCCC----CceEEEEEcCHHHHHHHHHHcCCCccC---CceEEEE
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI--RETPHK----RHHKFIEFYDVRAAEAALKSLNRSDIA---GKRIKLE 307 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~v--r~~g~s----rG~aFVeF~d~e~A~~Ai~~LnG~~i~---Gr~L~V~ 307 (818)
-+||||.+||.++...||..+|..|---+.+ +.+.+. +-+|||.|.+..+|..|+.+|||..|+ +..|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 4799999999999999999999998544443 444433 368999999999999999999999887 6899999
Q ss_pred ecCCCcc
Q 003463 308 PSRPGGA 314 (818)
Q Consensus 308 ~a~~~~~ 314 (818)
+++....
T Consensus 114 lAKSNtK 120 (284)
T KOG1457|consen 114 LAKSNTK 120 (284)
T ss_pred ehhcCcc
Confidence 9987653
No 132
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.95 E-value=7.2e-05 Score=81.39 Aligned_cols=153 Identities=16% Similarity=0.240 Sum_probs=110.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhc-----CCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQ-----YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~-----fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
.+..|-.++||+.-++.+|..+|+- -|.+......++..|.+.|.|.|.|.-+.|++. +...+.++.|.|..+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 4556778999999999999999983 234444445677889999999999999999984 7777788888876554
Q ss_pred CCCC---------CCC---CCCCccceeeecCCCCCCHHHHHHHhhcc----CCeEE---EEe-cCCCCceEEEEEcCHH
Q 003463 226 PKDN---------PSD---KDLNQGTLVVFNLDPSVSNEDLRQIFGAY----GEVKE---IRE-TPHKRHHKFIEFYDVR 285 (818)
Q Consensus 226 pk~~---------~~~---~~~~~~tL~V~NLp~~vteedL~~lFs~f----G~I~~---vr~-~g~srG~aFVeF~d~e 285 (818)
..+- ... ...+.-.|.+++||+++++.|+.++|.+- |.++. |+- +++..|-|||.|..++
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee 217 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEE 217 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHH
Confidence 3321 000 11234467789999999999999999742 22223 332 6777899999999999
Q ss_pred HHHHHHHHcCCCccCCceEE
Q 003463 286 AAEAALKSLNRSDIAGKRIK 305 (818)
Q Consensus 286 ~A~~Ai~~LnG~~i~Gr~L~ 305 (818)
+|..|+.+ |...++-|.|.
T Consensus 218 ~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 218 DAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred HHHHHHHH-HHHHHhHHHHH
Confidence 99999984 44444434443
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.91 E-value=1e-06 Score=96.29 Aligned_cols=151 Identities=19% Similarity=0.334 Sum_probs=121.4
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCc-ccccccccccccCCCCCCC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK-PLRRRKLDIHFSIPKDNPS 231 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~-~l~gr~L~V~~a~pk~~~~ 231 (818)
..||++||.+.++..+|..+|..-- +-.-...--..||+||.+.+...|.+|++.++|+ .+.|+.+.+..+.++...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak-~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr- 79 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK-IPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR- 79 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc-CCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH-
Confidence 4689999999999999999997541 0000001124689999999999999999999885 588999999998876643
Q ss_pred CCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCC--CceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 232 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHK--RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 232 ~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~s--rG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
.+.+-|.|+|+...++-|..+...||.|..|...... .-..-|+|...+.+..||.+|+|..+....++|.|-
T Consensus 80 -----srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 -----SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred -----hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 3458999999999999999999999999998643221 223457889999999999999999999999999885
Q ss_pred C
Q 003463 310 R 310 (818)
Q Consensus 310 ~ 310 (818)
-
T Consensus 155 P 155 (584)
T KOG2193|consen 155 P 155 (584)
T ss_pred c
Confidence 3
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.90 E-value=2.1e-05 Score=93.42 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=118.3
Q ss_pred ccccccccCCCCCChHHHHHhhcCCCcE-EEeecCC-CCCcccEEEEEecChhhcc----ccCccccCCCCccccCCCCC
Q 003463 74 MDDFDLRGLPSSLEDLEDYDIFGSGGGM-ELEGEPQ-ESLSMSMSKISISDSASGN----GLLHYSVPNGAGTVAGEHPY 147 (818)
Q Consensus 74 ~~e~~V~~Lp~s~~E~el~diF~~~G~i-~V~~d~~-t~~skG~a~v~f~~~~~a~----~~~~~~l~n~~~~~~g~~~~ 147 (818)
.+.+|+++|...+++.++..+|..+|.+ +|.++.. -++..+++|+.|....++. .+....+.++..++.-..+
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~- 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP- 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc-
Confidence 5789999999999999999999999988 4766664 5677789999888665443 2222223233222221111
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccc--ccccccccC
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRR--RKLDIHFSI 225 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~g--r~L~V~~a~ 225 (818)
...+++.++|++|+.++....|...|..||.|+.|.. .+..-||+|.|.+...|+.|++.+.|..|.+ +.+.|.|+.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy-~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY-RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec-ccCCcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 4567899999999999999999999999999999864 4456799999999999999999999999975 668888875
Q ss_pred CC
Q 003463 226 PK 227 (818)
Q Consensus 226 pk 227 (818)
+.
T Consensus 530 ~~ 531 (975)
T KOG0112|consen 530 PP 531 (975)
T ss_pred CC
Confidence 54
No 135
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.87 E-value=3.7e-05 Score=81.05 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=69.4
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
...+|+|.|||+.|+++||+++|..||.++.+-+ .+.+.|.|-|.|...++|.+|++.++|..++|+.|++....+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 4468999999999999999999999998887743 567789999999999999999999999999999999988765
Q ss_pred Cc
Q 003463 312 GG 313 (818)
Q Consensus 312 ~~ 313 (818)
..
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 44
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.86 E-value=2.9e-05 Score=81.88 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
.-..+|+|.|||+.|++++|+++|+.||.+..+- ..+.+.|.|-|.|...++|+.|++.+++..+.|+.|++....
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3447899999999999999999999999887765 367889999999999999999999999999999999888664
Q ss_pred C
Q 003463 226 P 226 (818)
Q Consensus 226 p 226 (818)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 137
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.86 E-value=2.8e-05 Score=90.02 Aligned_cols=85 Identities=18% Similarity=0.364 Sum_probs=73.3
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe--------CCCcccEEEEEEccHHHHHHHHHHhcCccc
Q 003463 143 GEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT--------ACKHRGFVMISYYDIRAARTAMRALQNKPL 214 (818)
Q Consensus 143 g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~--------~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l 214 (818)
|....+...+++|||+||++.++++.|...|..||+|.++++ ..+.+.++||.|.+..+|++|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 344444556789999999999999999999999999999984 234577999999999999999999999999
Q ss_pred ccccccccccCCC
Q 003463 215 RRRKLDIHFSIPK 227 (818)
Q Consensus 215 ~gr~L~V~~a~pk 227 (818)
.+..+++.|+++-
T Consensus 245 ~~~e~K~gWgk~V 257 (877)
T KOG0151|consen 245 MEYEMKLGWGKAV 257 (877)
T ss_pred eeeeeeecccccc
Confidence 9999999998543
No 138
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.83 E-value=3.8e-05 Score=86.70 Aligned_cols=76 Identities=18% Similarity=0.340 Sum_probs=66.7
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
.-.++|||.+|...+...+|+.||++||+|.-.++ +.-.+.|+||++.+.++|.+||..|+...|.|+-|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999987662 2234679999999999999999999999999999999875
Q ss_pred C
Q 003463 225 I 225 (818)
Q Consensus 225 ~ 225 (818)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 3
No 139
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.83 E-value=2.3e-05 Score=90.75 Aligned_cols=78 Identities=29% Similarity=0.414 Sum_probs=70.2
Q ss_pred CCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEec--------CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEE
Q 003463 234 DLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET--------PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 305 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~--------g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~ 305 (818)
+...++|||+||++.++++.|...|..||.|..+++. ...+.++||-|.+..+|++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4456799999999999999999999999999999752 23467999999999999999999999999999999
Q ss_pred EEecCC
Q 003463 306 LEPSRP 311 (818)
Q Consensus 306 V~~a~~ 311 (818)
+.|+++
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999864
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.69 E-value=4.3e-05 Score=86.50 Aligned_cols=74 Identities=24% Similarity=0.413 Sum_probs=62.8
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDIRTLYT-----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
..+|||+|||.++++++|+++|..||.|+...+ .++...||||+|++.++++.|+.+ +-..|.+++|.|+--.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 456999999999999999999999999988763 244448999999999999999996 57788899998875443
No 141
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.69 E-value=6.3e-05 Score=85.20 Aligned_cols=75 Identities=27% Similarity=0.493 Sum_probs=64.4
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEec-----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET-----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~-----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
.+|||.|||.++++++|+++|..||.|+..++. ++..+||||+|.+.+++..||.+ +-..+++++|.|+-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 469999999999999999999999999987542 22338999999999999999985 577899999999987764
Q ss_pred c
Q 003463 313 G 313 (818)
Q Consensus 313 ~ 313 (818)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 4
No 142
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.61 E-value=0.00021 Score=62.84 Aligned_cols=69 Identities=26% Similarity=0.332 Sum_probs=48.0
Q ss_pred cceeeecCCCCCCHHH----HHHHhhccC-CeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 238 GTLVVFNLDPSVSNED----LRQIFGAYG-EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 238 ~tL~V~NLp~~vteed----L~~lFs~fG-~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
..|+|.|||.+.+... |++++.-+| +|..| . .+.|+|.|.+.+.|++|.+.|+|..+.|++|.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~---~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S---GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e---CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 3689999999887655 556777775 77766 2 36799999999999999999999999999999999843
No 143
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.51 E-value=4e-05 Score=83.64 Aligned_cols=158 Identities=16% Similarity=0.135 Sum_probs=116.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC--------CCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTA--------CKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~--------~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
..|-|.||.+.+|.++++.||...|+|..+.+. ......|||.|.|...+..|.. |.+..+-++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 489999999999999999999999999988732 2245689999999999998877 7777766665554322
Q ss_pred CCCCCC-----------------------------C--CCC---------------------CCccceeeecCCCCCCHH
Q 003463 225 IPKDNP-----------------------------S--DKD---------------------LNQGTLVVFNLDPSVSNE 252 (818)
Q Consensus 225 ~pk~~~-----------------------------~--~~~---------------------~~~~tL~V~NLp~~vtee 252 (818)
...-.+ . ... .-..+++|.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 100000 0 000 001479999999999999
Q ss_pred HHHHHhhccCCeEEEEec-CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCC
Q 003463 253 DLRQIFGAYGEVKEIRET-PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPG 312 (818)
Q Consensus 253 dL~~lFs~fG~I~~vr~~-g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~ 312 (818)
++-+.|..+|.|...+.. +....+|.|+|........|+. ++|.++.-...++..-+|.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCcc
Confidence 999999999999988753 3345678899999999999997 6777776444444444443
No 144
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.49 E-value=0.00011 Score=77.35 Aligned_cols=79 Identities=24% Similarity=0.372 Sum_probs=69.2
Q ss_pred CCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEE-----ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEE
Q 003463 233 KDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR-----ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLE 307 (818)
Q Consensus 233 ~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr-----~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~ 307 (818)
+......+||+|++..+|.+++...|+.||.|..+. ..++.+||+||+|.+.+.+++|++ |+|..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 344567899999999999999999999999997553 456689999999999999999999 99999999999999
Q ss_pred ecCCC
Q 003463 308 PSRPG 312 (818)
Q Consensus 308 ~a~~~ 312 (818)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87643
No 145
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.48 E-value=0.00022 Score=82.56 Aligned_cols=160 Identities=15% Similarity=0.066 Sum_probs=114.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcC-CCEEEE---EeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQY-GDIRTL---YTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~f-G~I~~v---~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
.++.+-+.+.+.+.++.+++++|... -.-..+ .+.+...|-++|.|....++++|++. +......|.+.|.....
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 34455567999999999999999732 222222 24455589999999999999999983 55556666666543211
Q ss_pred CCC-------------------------CC----------CCCCCccceeeecCCCCCCHHHHHHHhhccCCeEE-EEec
Q 003463 227 KDN-------------------------PS----------DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKE-IRET 270 (818)
Q Consensus 227 k~~-------------------------~~----------~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~-vr~~ 270 (818)
... +. ........|||..||..+++.++.++|...-.|++ |.++
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 000 00 00011258999999999999999999998777776 6553
Q ss_pred ----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 271 ----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 271 ----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
++.++.|||+|..++++.+|...-+...++-+.|+|.-...
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 34567899999999999999987777777789999976543
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.46 E-value=0.00042 Score=63.34 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=58.6
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcC--CCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccc----cccccc
Q 003463 153 RTLFVRNINSNVEDSELRALFEQY--GDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLR----RRKLDI 221 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~f--G~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~----gr~L~V 221 (818)
+||.|+|||...|.++|.+++... |...-++ .++.+.|||||.|.+.+.|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 699999999999999999988753 3333333 35678999999999999999999999998875 345566
Q ss_pred cccC
Q 003463 222 HFSI 225 (818)
Q Consensus 222 ~~a~ 225 (818)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6664
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.44 E-value=0.00038 Score=61.30 Aligned_cols=68 Identities=21% Similarity=0.400 Sum_probs=48.7
Q ss_pred cEEEEcCCCCCCcHHHH----HHHhhcCC-CEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccC
Q 003463 153 RTLFVRNINSNVEDSEL----RALFEQYG-DIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSI 225 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeL----r~lFs~fG-~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~ 225 (818)
..|+|.|||.+.+...| +.++..+| +|..| ..+.|+|.|.+.+.|++|.+.|+|..+.|++|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46999999999887664 56666775 67776 35789999999999999999999999999999999974
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.43 E-value=9e-05 Score=75.55 Aligned_cols=75 Identities=20% Similarity=0.198 Sum_probs=66.8
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEec----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
...||||.|+...++|+-|.++|-+-|.|.+|.+. ++.+ ||||+|.++....-|++.+||..+.+..++|.+-..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 45799999999999999999999999999999763 2334 999999999999999999999999999999988543
No 149
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.34 E-value=0.00035 Score=75.97 Aligned_cols=172 Identities=16% Similarity=0.194 Sum_probs=120.8
Q ss_pred cccccccCCCCCchhhhhhcCccccccccCCCCCChHHHHHhhcCCCcE---EEeecCCCCCcccEEEEEecChhhcc--
Q 003463 53 VMNPAIGNSLPDDEDELLAGIMDDFDLRGLPSSLEDLEDYDIFGSGGGM---ELEGEPQESLSMSMSKISISDSASGN-- 127 (818)
Q Consensus 53 ~~~~~IgnLlPddeddl~~~v~~e~~V~~Lp~s~~E~el~diF~~~G~i---~V~~d~~t~~skG~a~v~f~~~~~a~-- 127 (818)
.-..+++++....+.+ +....++++.+-+..++.++..++...|.. .+.+......++++..+.|.....+.
T Consensus 70 ~~~~~~~~~s~~~~~~---~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~ 146 (285)
T KOG4210|consen 70 DGLSEEDSLSSKEELR---GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAA 146 (285)
T ss_pred cchhhcccccCCcccc---cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHH
Confidence 4455666666643222 456789999999999998888888888754 33333456678899999998766332
Q ss_pred -ccCccccCC-C-----CccccCCC------CCCCCCCcEEE-EcCCCCCCcHHHHHHHhhcCCCEEEEEe-----CCCc
Q 003463 128 -GLLHYSVPN-G-----AGTVAGEH------PYGEHPSRTLF-VRNINSNVEDSELRALFEQYGDIRTLYT-----ACKH 188 (818)
Q Consensus 128 -~~~~~~l~n-~-----~~~~~g~~------~~~e~~srtLf-V~NLP~~vTEeeLr~lFs~fG~I~~v~~-----~~ks 188 (818)
.+....... . .....+.. .....+..++| |++|+.++++++|+..|..+|.|..++. ++..
T Consensus 147 l~~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~ 226 (285)
T KOG4210|consen 147 LEESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDS 226 (285)
T ss_pred HHhhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccch
Confidence 111110100 0 00001110 11222344565 9999999999999999999999999983 6778
Q ss_pred ccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCC
Q 003463 189 RGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKD 228 (818)
Q Consensus 189 rG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~ 228 (818)
+|||+|.|.+...+..|+.. +...+.++++.+.+..+..
T Consensus 227 kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 227 KGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 99999999999999999987 8889999999999887654
No 150
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.31 E-value=9.7e-05 Score=87.59 Aligned_cols=139 Identities=14% Similarity=0.184 Sum_probs=112.5
Q ss_pred ccccccCCCCCChHHHHHhhcCCCcEEE---eecCCCCCcccEEEEEecChhhccccCccccCCCCccccCCCCCCCCCC
Q 003463 76 DFDLRGLPSSLEDLEDYDIFGSGGGMEL---EGEPQESLSMSMSKISISDSASGNGLLHYSVPNGAGTVAGEHPYGEHPS 152 (818)
Q Consensus 76 e~~V~~Lp~s~~E~el~diF~~~G~i~V---~~d~~t~~skG~a~v~f~~~~~a~~~~~~~l~n~~~~~~g~~~~~e~~s 152 (818)
+.|+++|+..+.+.++.+.|..+|.|++ ..-..+++-+|++++.|...+.+...+.+... .+.+ .
T Consensus 669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~----~~~g--------K 736 (881)
T KOG0128|consen 669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS----CFFG--------K 736 (881)
T ss_pred HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh----hhhh--------h
Confidence 4889999999999999999999998842 22335778889999999987765544333221 1111 5
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
..|+|+|.|+..|.++|+.++..+|.+.+++ ..++.+|.|+|.|.+..+|.+++...+...+..+.+.|..+.|
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 6899999999999999999999999998886 3678899999999999999999998888888877777777655
No 151
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.29 E-value=0.00023 Score=74.10 Aligned_cols=76 Identities=21% Similarity=0.304 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCE-----EEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDI-----RTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I-----~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
.-+||.+.|..+++++-|...|.+|-.. ..-+.+++++||+||.|.+..++..|+++++|..++.+.|++..+.-
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 4589999999999999999999988643 22235899999999999999999999999999999999999886654
Q ss_pred C
Q 003463 227 K 227 (818)
Q Consensus 227 k 227 (818)
+
T Consensus 270 k 270 (290)
T KOG0226|consen 270 K 270 (290)
T ss_pred H
Confidence 3
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.19 E-value=0.00073 Score=62.78 Aligned_cols=70 Identities=29% Similarity=0.448 Sum_probs=45.0
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCC-----ccCCceEEEEec
Q 003463 239 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-----DIAGKRIKLEPS 309 (818)
Q Consensus 239 tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~-----~i~Gr~L~V~~a 309 (818)
.|.|.+++..++.++|++.|+.||.|..|++.. ....|+|+|.+.++|++|+..+.-. .+.+..++++.-
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~-G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR-GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T-T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC-CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 578999999999999999999999999999864 3347999999999999999877543 566666666553
No 153
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.12 E-value=0.0005 Score=72.58 Aligned_cols=77 Identities=16% Similarity=0.304 Sum_probs=67.6
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccc
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIH 222 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~ 222 (818)
.+.+.+.+||+|+...+|.+++...|+.||.|..+. ..+..+||+||+|.+.+.+++|++ |++..|.++.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 345678999999999999999999999999997544 345689999999999999999999 99999999999987
Q ss_pred ccC
Q 003463 223 FSI 225 (818)
Q Consensus 223 ~a~ 225 (818)
+..
T Consensus 176 ~~r 178 (231)
T KOG4209|consen 176 LKR 178 (231)
T ss_pred eee
Confidence 654
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.03 E-value=0.0022 Score=69.06 Aligned_cols=76 Identities=22% Similarity=0.451 Sum_probs=62.2
Q ss_pred ccceeeecCCCCCCHHH----H--HHHhhccCCeEEEEecCCC------Cce--EEEEEcCHHHHHHHHHHcCCCccCCc
Q 003463 237 QGTLVVFNLDPSVSNED----L--RQIFGAYGEVKEIRETPHK------RHH--KFIEFYDVRAAEAALKSLNRSDIAGK 302 (818)
Q Consensus 237 ~~tL~V~NLp~~vteed----L--~~lFs~fG~I~~vr~~g~s------rG~--aFVeF~d~e~A~~Ai~~LnG~~i~Gr 302 (818)
..-+||-+|++.+-.|+ | .++|.+||.|+.|.+..+. .+. .||.|.+.++|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 44689999999987776 3 3789999999999664321 122 39999999999999999999999999
Q ss_pred eEEEEecCCC
Q 003463 303 RIKLEPSRPG 312 (818)
Q Consensus 303 ~L~V~~a~~~ 312 (818)
.|+..|...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999997643
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.61 E-value=0.0027 Score=68.45 Aligned_cols=75 Identities=24% Similarity=0.398 Sum_probs=61.9
Q ss_pred CcEEEEcCCCCCCcHHHH------HHHhhcCCCEEEEEeCCCc------ccE--EEEEEccHHHHHHHHHHhcCcccccc
Q 003463 152 SRTLFVRNINSNVEDSEL------RALFEQYGDIRTLYTACKH------RGF--VMISYYDIRAARTAMRALQNKPLRRR 217 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeL------r~lFs~fG~I~~v~~~~ks------rG~--AFV~F~d~e~A~~Al~~Lng~~l~gr 217 (818)
..-+||-+||+.+-.|+. .++|.+||.|..|.+..+. .+. +||+|.+.|+|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 456899999999888872 3789999999998753331 222 59999999999999999999999999
Q ss_pred cccccccCC
Q 003463 218 KLDIHFSIP 226 (818)
Q Consensus 218 ~L~V~~a~p 226 (818)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988754
No 156
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.52 E-value=0.0051 Score=56.62 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=53.2
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEE------------ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCce-
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIR------------ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKR- 303 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr------------~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~- 303 (818)
..-|.|.+.|+. ....|.+.|++||+|.+.. -.....++.-|+|+++.+|.+||+ -||..+.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456899999988 5577889999999998875 123446789999999999999998 6999999864
Q ss_pred EEEEecC
Q 003463 304 IKLEPSR 310 (818)
Q Consensus 304 L~V~~a~ 310 (818)
+-|.+++
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4477764
No 157
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.44 E-value=0.0029 Score=69.23 Aligned_cols=78 Identities=24% Similarity=0.329 Sum_probs=69.1
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEE-------------EecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI-------------RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK 302 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~v-------------r~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr 302 (818)
...+|||-+||..+++++|.++|.++|.|+.= +++...|+-|.|.|+|...|+.|+.-++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 34589999999999999999999999988653 24667789999999999999999999999999999
Q ss_pred eEEEEecCCCc
Q 003463 303 RIKLEPSRPGG 313 (818)
Q Consensus 303 ~L~V~~a~~~~ 313 (818)
.|+|.++..+.
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999887554
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.41 E-value=0.0066 Score=49.36 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=43.2
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHH
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAAL 291 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai 291 (818)
+.|.|.|.+++.. +++...|..||+|..+.++ ......+|+|.++.+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 3578999998765 4566688899999999986 44578999999999999985
No 159
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.39 E-value=0.0033 Score=69.58 Aligned_cols=103 Identities=25% Similarity=0.346 Sum_probs=79.7
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCC-ccCCceEEEEecCCCcccc
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRS-DIAGKRIKLEPSRPGGARR 316 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~-~i~Gr~L~V~~a~~~~~r~ 316 (818)
..||++||.+.++..||..+|... .+-.....--..||+||.+.|..-|.+|++.++|+ ++.|+++.|..+-++..+.
T Consensus 2 nklyignL~p~~~psdl~svfg~a-k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrs 80 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA-KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRS 80 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc-cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHh
Confidence 368999999999999999999764 11100000123589999999999999999999997 8999999999998877653
Q ss_pred --hhhhccchhccHHHHHHHHhhcCCC
Q 003463 317 --NLMLQLNQELEQDESRILQHQVGSP 341 (818)
Q Consensus 317 --~~~~ql~~~~~~~~l~~~f~~~GsP 341 (818)
..+++..+++..+-+..+..+||.+
T Consensus 81 rk~Qirnippql~wevld~Ll~qyg~v 107 (584)
T KOG2193|consen 81 RKIQIRNIPPQLQWEVLDSLLAQYGTV 107 (584)
T ss_pred hhhhHhcCCHHHHHHHHHHHHhccCCH
Confidence 4566777777777777777777755
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.35 E-value=0.0047 Score=68.74 Aligned_cols=66 Identities=33% Similarity=0.473 Sum_probs=55.1
Q ss_pred CCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCC------------------CCceEEEEEcCHHHHHHHHHH
Q 003463 232 DKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH------------------KRHHKFIEFYDVRAAEAALKS 293 (818)
Q Consensus 232 ~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~------------------srG~aFVeF~d~e~A~~Ai~~ 293 (818)
.++...++|.+.|||.+-.-+-|.+||+.+|.|+.||+..- .+-+|+|||+..+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34456789999999999989999999999999999986321 144699999999999999997
Q ss_pred cCCC
Q 003463 294 LNRS 297 (818)
Q Consensus 294 LnG~ 297 (818)
|+..
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7543
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.30 E-value=0.0089 Score=55.57 Aligned_cols=59 Identities=14% Similarity=0.253 Sum_probs=39.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCc
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNK 212 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~ 212 (818)
..|.|.+++..++-++|++.|+.||.|..|... +....|+|.|.+.++|+.|+..+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~-~G~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS-RGDTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE---TT-SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec-CCCCEEEEEECCcchHHHHHHHHHhc
Confidence 468899999999999999999999999998753 34558999999999999999976544
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.23 E-value=0.0075 Score=63.30 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCcccccccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEE----EecCCCCce
Q 003463 201 AARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEI----RETPHKRHH 276 (818)
Q Consensus 201 ~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~v----r~~g~srG~ 276 (818)
-|+.|...|++....++.|+|.|+.. ..|||.||..-++.|.|.+.|+.||.|... +..++..+-
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-----------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~e 74 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-----------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTRE 74 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-----------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccccccc
Confidence 46677778999999999999999863 469999999999999999999999987653 445566678
Q ss_pred EEEEEcCHHHHHHHHHHcCCCccC
Q 003463 277 KFIEFYDVRAAEAALKSLNRSDIA 300 (818)
Q Consensus 277 aFVeF~d~e~A~~Ai~~LnG~~i~ 300 (818)
++|+|...-.|.+|+..+.-.-+.
T Consensus 75 g~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 75 GIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred chhhhhcchhHHHHHHHhccCccc
Confidence 999999999999999987544333
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.18 E-value=0.011 Score=48.00 Aligned_cols=52 Identities=15% Similarity=0.404 Sum_probs=43.1
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHH
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAM 206 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al 206 (818)
+.|-|.+.+.+..+. +...|..||+|..+... ......+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 678899998876654 55588899999999865 45678999999999999985
No 164
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=96.18 E-value=0.0025 Score=70.34 Aligned_cols=73 Identities=19% Similarity=0.402 Sum_probs=60.5
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEee-eccccc-ceeEEEEEecCCcccHHHHHHHhcCCcccC
Q 003463 652 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLP-IDFKNK-CNVGYAFINMLSPLHIIPFYEAFNGKKWEK 725 (818)
Q Consensus 652 d~rTtvMirNIPn~~~~~~l~~~id~~~~~~ydf~Ylp-~d~~~~-~n~gyafin~~~~~~~~~f~~~f~g~~w~~ 725 (818)
+....|.||++|+++|...|+..||- +...+.|.|+- -|+... |-.+.|||||..+.++..|...|+|+.+=.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p-~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINP-FPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCC-CccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 44578999999999999999999999 88888888765 554432 225569999999999999999999987754
No 165
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.16 E-value=0.011 Score=69.01 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=60.5
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCeE-EE--E--ecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 239 TLVVFNLDPSVSNEDLRQIFGAYGEVK-EI--R--ETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 239 tL~V~NLp~~vteedL~~lFs~fG~I~-~v--r--~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
.|-+.|+|++++-+||.++|..|-.+. +| | ..+...|-|.|-|++.++|.+|...|+++.|..+.|+|..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 688999999999999999999995432 22 2 3566788999999999999999999999999999998864
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=95.62 E-value=0.012 Score=64.65 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=67.4
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE-------------eCCCcccEEEEEEccHHHHHHHHHHhcCcccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY-------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 217 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~-------------~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr 217 (818)
..-+|||-+||..+++.+|..+|.++|.|..-+ .+.+.||-|.|.|.|...|+.|+.-++++.+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 356899999999999999999999999885533 3677899999999999999999999999999999
Q ss_pred cccccccCC
Q 003463 218 KLDIHFSIP 226 (818)
Q Consensus 218 ~L~V~~a~p 226 (818)
+|+|.++..
T Consensus 145 ~ikvs~a~~ 153 (351)
T KOG1995|consen 145 TIKVSLAER 153 (351)
T ss_pred Cchhhhhhh
Confidence 999887753
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.56 E-value=0.0073 Score=63.36 Aligned_cols=68 Identities=29% Similarity=0.523 Sum_probs=58.3
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCC-------------CCc----eEEEEEcCHHHHHHHHHHcCCCc
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPH-------------KRH----HKFIEFYDVRAAEAALKSLNRSD 298 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~-------------srG----~aFVeF~d~e~A~~Ai~~LnG~~ 298 (818)
..+.||+++||+.+....|+++|+.||.|-.|.+.+. ++. -|.|||.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5678999999999999999999999999999865321 111 27899999999999999999999
Q ss_pred cCCce
Q 003463 299 IAGKR 303 (818)
Q Consensus 299 i~Gr~ 303 (818)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99964
No 168
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.52 E-value=0.014 Score=65.17 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=59.2
Q ss_pred CCCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCC------------------cccEEEEEEccHHHHHHHHHHh
Q 003463 148 GEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACK------------------HRGFVMISYYDIRAARTAMRAL 209 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~k------------------srG~AFV~F~d~e~A~~Al~~L 209 (818)
.+-++++|.+-|||.+-.-+-|.++|..+|.|..|++... .+-+|+|+|+..+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3458999999999999999999999999999999984111 2558999999999999999977
Q ss_pred cCccccccccccc
Q 003463 210 QNKPLRRRKLDIH 222 (818)
Q Consensus 210 ng~~l~gr~L~V~ 222 (818)
+...-...-|+|.
T Consensus 307 ~~e~~wr~glkvk 319 (484)
T KOG1855|consen 307 NPEQNWRMGLKVK 319 (484)
T ss_pred chhhhhhhcchhh
Confidence 5544443344443
No 169
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.37 E-value=0.026 Score=64.78 Aligned_cols=74 Identities=19% Similarity=0.216 Sum_probs=57.6
Q ss_pred CCccceeeecCCCC--CCH----HHHHHHhhccCCeEEEEe----cCCCCceEEEEEcCHHHHHHHHHHcCCCccC-Cce
Q 003463 235 LNQGTLVVFNLDPS--VSN----EDLRQIFGAYGEVKEIRE----TPHKRHHKFIEFYDVRAAEAALKSLNRSDIA-GKR 303 (818)
Q Consensus 235 ~~~~tL~V~NLp~~--vte----edL~~lFs~fG~I~~vr~----~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~-Gr~ 303 (818)
.-...|+|.|+|.- ... .-|.++|+++|+|....+ .+..+||.|++|.+.++|+.|++.|||+.|. .++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34568899999852 222 346688999999988743 4668999999999999999999999999887 466
Q ss_pred EEEEe
Q 003463 304 IKLEP 308 (818)
Q Consensus 304 L~V~~ 308 (818)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66643
No 170
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.95 E-value=0.15 Score=47.86 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=66.9
Q ss_pred CcceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccE
Q 003463 652 DTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKV 731 (818)
Q Consensus 652 d~rTtvMirNIPn~~~~~~l~~~id~~~~~~ydf~Ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~g~~w~~~~s~k~ 731 (818)
..+|+|-+=-+|+.++..+++..+-+.+.....-+.+.-|.. -|.-=+-|-|.+..+|..||+.|||++++..-. -+
T Consensus 10 ~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEp-E~ 86 (110)
T PF07576_consen 10 ERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEP-ET 86 (110)
T ss_pred CCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCC-ce
Confidence 344666666899999988777667677777777666666643 466669999999999999999999999988765 45
Q ss_pred EEEEe-eecc
Q 003463 732 ASLAY-ARIQ 740 (818)
Q Consensus 732 ~~~~~-A~iQ 740 (818)
|.|.| .+||
T Consensus 87 ChvvfV~~Ve 96 (110)
T PF07576_consen 87 CHVVFVKSVE 96 (110)
T ss_pred eEEEEEEEEE
Confidence 99999 4555
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.91 E-value=0.015 Score=61.14 Aligned_cols=62 Identities=31% Similarity=0.399 Sum_probs=50.2
Q ss_pred HHHHHHhh-ccCCeEEEEec----CCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Q 003463 252 EDLRQIFG-AYGEVKEIRET----PHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 252 edL~~lFs-~fG~I~~vr~~----g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~ 313 (818)
+||...|+ +||+|+++.+. ..-.|-++|.|...++|++|+..||+..+.|++|..+++.-..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 45555555 89999988542 2336779999999999999999999999999999999975433
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=94.79 E-value=0.09 Score=51.46 Aligned_cols=75 Identities=31% Similarity=0.434 Sum_probs=53.8
Q ss_pred CCccceeeecCCC------CCCH---HHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEE
Q 003463 235 LNQGTLVVFNLDP------SVSN---EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 305 (818)
Q Consensus 235 ~~~~tL~V~NLp~------~vte---edL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~ 305 (818)
+...||.|.=+.+ ...+ .+|.+.|..||+|.=+|+.+ +.-.|.|.+-+.|.+|+. |+|.++.|+.|+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~ 100 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLK 100 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEE
Confidence 3456777775551 1221 37888899999999999875 468999999999999997 999999999999
Q ss_pred EEecCCCc
Q 003463 306 LEPSRPGG 313 (818)
Q Consensus 306 V~~a~~~~ 313 (818)
|+...|.-
T Consensus 101 i~LKtpdW 108 (146)
T PF08952_consen 101 IRLKTPDW 108 (146)
T ss_dssp EEE-----
T ss_pred EEeCCccH
Confidence 99977654
No 173
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.69 E-value=0.063 Score=49.51 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=52.0
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE------------eCCCcccEEEEEEccHHHHHHHHHHhcCccccccc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLY------------TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRK 218 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~------------~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~ 218 (818)
..+-|.|-+.|+. ....|.+.|++||+|.+.. ..........|+|.+..+|++||. .||..+.|.-
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcE
Confidence 4567889899988 5567889999999998875 112356689999999999999999 5999998754
Q ss_pred c-ccccc
Q 003463 219 L-DIHFS 224 (818)
Q Consensus 219 L-~V~~a 224 (818)
| -|.++
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 3 45555
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.51 E-value=0.025 Score=59.48 Aligned_cols=68 Identities=21% Similarity=0.414 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeC-------------CCccc----EEEEEEccHHHHHHHHHHhcCcc
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTA-------------CKHRG----FVMISYYDIRAARTAMRALQNKP 213 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~-------------~ksrG----~AFV~F~d~e~A~~Al~~Lng~~ 213 (818)
.+-.||+.+||+.+.-.-|+++|+.||.|-.|+.. +..+. -|.|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45689999999999999999999999999999831 11222 37899999999999999999999
Q ss_pred ccccc
Q 003463 214 LRRRK 218 (818)
Q Consensus 214 l~gr~ 218 (818)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.48 E-value=0.12 Score=58.30 Aligned_cols=81 Identities=30% Similarity=0.349 Sum_probs=70.8
Q ss_pred ceeEEeecCCCCCCHHHHHHHHHhhCCCcccEEEeeecccccceeEEEEEecCCcccHHHHHHHhcCCcccCCCCccEEE
Q 003463 654 RTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPLHIIPFYEAFNGKKWEKFNSEKVAS 733 (818)
Q Consensus 654 rTtvMirNIPn~~~~~~l~~~id~~~~~~ydf~Ylp~d~~~~~n~gyafin~~~~~~~~~f~~~f~g~~w~~~~s~k~~~ 733 (818)
-|+|-|=-||+.+|..+|+..+.....---|+--++ | .--|.--+-|-|.+..+|..||+.|||+.++..-.+ +|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivR-d--~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e-~Ch 149 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVR-D--GMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPE-VCH 149 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEee-c--CCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCcc-cee
Confidence 589999999999999999999998888888888888 3 444555599999999999999999999999887766 999
Q ss_pred EEeee
Q 003463 734 LAYAR 738 (818)
Q Consensus 734 ~~~A~ 738 (818)
|-|+.
T Consensus 150 ll~V~ 154 (493)
T KOG0804|consen 150 LLYVD 154 (493)
T ss_pred EEEEE
Confidence 99964
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.26 E-value=0.087 Score=56.35 Aligned_cols=61 Identities=20% Similarity=0.248 Sum_probs=49.7
Q ss_pred HHHHHHHhhccCCeEEEEec---CCC---CceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCC
Q 003463 251 NEDLRQIFGAYGEVKEIRET---PHK---RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRP 311 (818)
Q Consensus 251 eedL~~lFs~fG~I~~vr~~---g~s---rG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~ 311 (818)
++++++.+++||+|..|-+. +.. .--.||+|...++|.+|+-.|||..|+|+.++..|..-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 57788999999999987542 111 11379999999999999999999999999999888653
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.18 E-value=0.087 Score=60.71 Aligned_cols=71 Identities=20% Similarity=0.368 Sum_probs=55.2
Q ss_pred CcEEEEcCCCCCCc--H----HHHHHHhhcCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCcccc-ccccc
Q 003463 152 SRTLFVRNINSNVE--D----SELRALFEQYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLR-RRKLD 220 (818)
Q Consensus 152 srtLfV~NLP~~vT--E----eeLr~lFs~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~-gr~L~ 220 (818)
...|+|-|+|.--. . .-|.++|+++|+|..+.. .+..+||.|++|.+.++|+.|++.|+|..|. .+++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 45777888874322 1 236689999999988873 5679999999999999999999999998886 44554
Q ss_pred cc
Q 003463 221 IH 222 (818)
Q Consensus 221 V~ 222 (818)
|.
T Consensus 138 v~ 139 (698)
T KOG2314|consen 138 VR 139 (698)
T ss_pred ee
Confidence 43
No 178
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.51 E-value=0.062 Score=58.49 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=57.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCC--CEEEEE-----eCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYG--DIRTLY-----TACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG--~I~~v~-----~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
.-.+||+||-+.+|++||.+.+...| .+.+++ ..+.+||||+|...+..+.++.|+.|..+.|.|+.-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 34799999999999999998887666 233333 57899999999999999999999999999898875444
No 179
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.24 E-value=0.27 Score=43.67 Aligned_cols=54 Identities=13% Similarity=0.278 Sum_probs=42.1
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcC
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN 295 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~Ln 295 (818)
...+|. .|..+...||.++|++||.|.-.-+.. .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d---TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND---TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEECT---TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC---CcEEEEeecHHHHHHHHHHhc
Confidence 455666 999999999999999999987666653 459999999999999999876
No 180
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.98 E-value=0.39 Score=46.71 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=57.0
Q ss_pred CCCccceeeecCCCCC-CHHHHH---HHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 234 DLNQGTLVVFNLDPSV-SNEDLR---QIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 234 ~~~~~tL~V~NLp~~v-teedL~---~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
+..-.||.|+=|...+ ..+||+ +..+.||.|.+|...| +.-|.|.|.|..+|.+|+.++.. ...|..+.+.|.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 4455689998776665 334554 5567899999998876 45799999999999999999876 566788888875
Q ss_pred C
Q 003463 310 R 310 (818)
Q Consensus 310 ~ 310 (818)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 181
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.73 E-value=0.05 Score=57.37 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=47.4
Q ss_pred HHHHHHhh-cCCCEEEEEe----CCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 167 SELRALFE-QYGDIRTLYT----ACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 167 eeLr~lFs-~fG~I~~v~~----~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
|+|...|+ +||+|+.+.+ .-.-.|-++|.|...++|++|+..|++..+.|++|...++
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34555555 8999998853 2235788999999999999999999999999999988765
No 182
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=92.66 E-value=0.12 Score=57.35 Aligned_cols=72 Identities=22% Similarity=0.519 Sum_probs=59.5
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCC--------CceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHK--------RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~s--------rG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
+.|.|.||.+.+|.+++..+|.-.|+|.++++.+.- .-.|||.|.|...+..|.. |..+.+-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 478999999999999999999999999999875532 3469999999999988876 7777777777777654
Q ss_pred C
Q 003463 310 R 310 (818)
Q Consensus 310 ~ 310 (818)
-
T Consensus 87 ~ 87 (479)
T KOG4676|consen 87 G 87 (479)
T ss_pred C
Confidence 3
No 183
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.32 E-value=0.11 Score=60.28 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=62.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhhc-cCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccC---CceEEEEecCCC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGA-YGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA---GKRIKLEPSRPG 312 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~-fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~---Gr~L~V~~a~~~ 312 (818)
.+.|+|.||-..+|.-+|+.++.. .|.|.+..+ .+-+.+|||.|.+.++|.+.+.+|||..+- ++.|.+.|....
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 468999999999999999999995 556666644 344678999999999999999999998653 589999998654
Q ss_pred c
Q 003463 313 G 313 (818)
Q Consensus 313 ~ 313 (818)
.
T Consensus 523 e 523 (718)
T KOG2416|consen 523 E 523 (718)
T ss_pred H
Confidence 3
No 184
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.74 E-value=0.33 Score=56.03 Aligned_cols=93 Identities=15% Similarity=0.198 Sum_probs=65.9
Q ss_pred HHHHHHhcCcccccccccccccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhc--cCCeEEEEecCCCCceEEEE
Q 003463 203 RTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGA--YGEVKEIRETPHKRHHKFIE 280 (818)
Q Consensus 203 ~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~--fG~I~~vr~~g~srG~aFVe 280 (818)
.++++...+..++.+-.+|.. ..+.+.|.|+-||..+.+|+++.||+. +-++++|.+.-.. --||.
T Consensus 151 ~Evlresp~VqvDekgekVrp----------~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~--nWyIT 218 (684)
T KOG2591|consen 151 VEVLRESPNVQVDEKGEKVRP----------NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND--NWYIT 218 (684)
T ss_pred HHHHhcCCCceeccCcccccc----------CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC--ceEEE
Confidence 344444444445544444432 224567889999999999999999985 6788888763222 36999
Q ss_pred EcCHHHHHHHHHHcCC--CccCCceEEEE
Q 003463 281 FYDVRAAEAALKSLNR--SDIAGKRIKLE 307 (818)
Q Consensus 281 F~d~e~A~~Ai~~LnG--~~i~Gr~L~V~ 307 (818)
|++..||+.|.+.|.. ++|.||+|...
T Consensus 219 fesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 219 FESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 9999999999998864 47778776544
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.64 E-value=0.8 Score=38.57 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=41.4
Q ss_pred ccceeeecCCCCCCHHHHHHHhhcc----CCeEEEEecCCCCceEEEEEcCHHHHHHHHHHc
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAY----GEVKEIRETPHKRHHKFIEFYDVRAAEAALKSL 294 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~f----G~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~L 294 (818)
...|+|.|++ +++.+||+.+|..| + ...|.-... .-|-|-|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 3479999996 58889999999999 4 234432222 24889999999999999865
No 186
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.00 E-value=0.35 Score=55.89 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=59.3
Q ss_pred cCCCCCCCCCCcEEEEcCCCCCCcHHHHHHHhhc--CCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcC--cccccc
Q 003463 142 AGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQ--YGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN--KPLRRR 217 (818)
Q Consensus 142 ~g~~~~~e~~srtLfV~NLP~~vTEeeLr~lFs~--fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng--~~l~gr 217 (818)
.|++....+..+.|+++-||..+-+|+++.||+. +-++.+|...- ..--||+|++..||+.|.+.|.. +.|.|+
T Consensus 165 kgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~--N~nWyITfesd~DAQqAykylreevk~fqgK 242 (684)
T KOG2591|consen 165 KGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH--NDNWYITFESDTDAQQAYKYLREEVKTFQGK 242 (684)
T ss_pred CccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee--cCceEEEeecchhHHHHHHHHHHHHHhhcCc
Confidence 4444444555678889999999999999999984 67788876321 22368999999999999998865 456777
Q ss_pred ccccc
Q 003463 218 KLDIH 222 (818)
Q Consensus 218 ~L~V~ 222 (818)
+|..+
T Consensus 243 pImAR 247 (684)
T KOG2591|consen 243 PIMAR 247 (684)
T ss_pred chhhh
Confidence 66544
No 187
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=90.92 E-value=1 Score=40.13 Aligned_cols=55 Identities=15% Similarity=0.316 Sum_probs=42.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcC
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQN 211 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng 211 (818)
...+|. +|..+...||.++|+.||.|.--.+. ..-|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhcc
Confidence 456666 99999999999999999998866553 45699999999999999997754
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=90.80 E-value=0.5 Score=46.38 Aligned_cols=73 Identities=25% Similarity=0.371 Sum_probs=51.5
Q ss_pred CCcEEEEcCCC-----CCCcH----HHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 151 PSRTLFVRNIN-----SNVED----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 151 ~srtLfV~NLP-----~~vTE----eeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
|..||.|.=+. ...-+ .+|.+.|..||+|.-++.. .+.-.|+|.+.+.|.+|+. ++|..+.|+.|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~~mwVTF~dg~sALaals-~dg~~v~g~~l~i 101 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GDTMWVTFRDGQSALAALS-LDGIQVNGRTLKI 101 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TTCEEEEESSCHHHHHHHH-GCCSEETTEEEEE
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CCeEEEEECccHHHHHHHc-cCCcEECCEEEEE
Confidence 45677776444 11223 3677889999998887642 3568999999999999999 8999999999999
Q ss_pred cccCCC
Q 003463 222 HFSIPK 227 (818)
Q Consensus 222 ~~a~pk 227 (818)
+...|.
T Consensus 102 ~LKtpd 107 (146)
T PF08952_consen 102 RLKTPD 107 (146)
T ss_dssp EE----
T ss_pred EeCCcc
Confidence 876553
No 189
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=90.76 E-value=0.33 Score=55.20 Aligned_cols=73 Identities=21% Similarity=0.239 Sum_probs=58.6
Q ss_pred eeeecCCCCC-CHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEecCCCcc
Q 003463 240 LVVFNLDPSV-SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGA 314 (818)
Q Consensus 240 L~V~NLp~~v-teedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a~~~~~ 314 (818)
|-+.-.+..+ +.++|...|.+||+|..|.+.-. .-.|.|+|.+..+|-+|-. ..+..|+++.|+|.|-.+...
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~~ 448 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSPV 448 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecCCcc
Confidence 3344444444 67899999999999999987433 4579999999999988876 799999999999999988663
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.45 E-value=0.52 Score=48.28 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=45.5
Q ss_pred CHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcC--CCccCCceEEEEecCCCc
Q 003463 250 SNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLN--RSDIAGKRIKLEPSRPGG 313 (818)
Q Consensus 250 teedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~Ln--G~~i~Gr~L~V~~a~~~~ 313 (818)
..+.|+++|..|+.+.....-+.- +-..|.|.+.++|.+|...|+ +..+.|..++|-|+.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999988887654332 348999999999999999999 999999999999996544
No 191
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.88 E-value=1 Score=43.97 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=57.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCcH-HH---HHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccc
Q 003463 144 EHPYGEHPSRTLFVRNINSNVED-SE---LRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKL 219 (818)
Q Consensus 144 ~~~~~e~~srtLfV~NLP~~vTE-ee---Lr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L 219 (818)
.+...+.|-.||.|+=|..++.. +| +...++.||+|.+|...| +--|.|.|+|..+|-+|+.+++. ...|..+
T Consensus 78 kk~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 78 KKNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred cccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 33445667889999877776543 34 445667899999996544 56799999999999999998876 5556666
Q ss_pred ccccc
Q 003463 220 DIHFS 224 (818)
Q Consensus 220 ~V~~a 224 (818)
++.|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 66654
No 192
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=89.86 E-value=0.22 Score=57.82 Aligned_cols=67 Identities=21% Similarity=0.344 Sum_probs=55.7
Q ss_pred CCCCCCcEEEEcCCCCCCcHHHHHHHhh-cCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccc
Q 003463 147 YGEHPSRTLFVRNINSNVEDSELRALFE-QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPL 214 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~vTEeeLr~lFs-~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l 214 (818)
....+++.|+|.||-.-.|.-+|+.++. ..|.|....+ .+-+..|||.|.+.++|.....+|+|..+
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm-DkIKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM-DKIKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH-HHhhcceeEecccHHHHHHHHHHHhcccc
Confidence 3455788999999999999999999999 5666666643 34577899999999999999999998554
No 193
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.83 E-value=0.55 Score=50.44 Aligned_cols=74 Identities=18% Similarity=0.344 Sum_probs=55.1
Q ss_pred CcEEEEcCC--CCCCcH---HHHHHHhhcCCCEEEEEeC---C---CcccEEEEEEccHHHHHHHHHHhcCccccccccc
Q 003463 152 SRTLFVRNI--NSNVED---SELRALFEQYGDIRTLYTA---C---KHRGFVMISYYDIRAARTAMRALQNKPLRRRKLD 220 (818)
Q Consensus 152 srtLfV~NL--P~~vTE---eeLr~lFs~fG~I~~v~~~---~---ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 220 (818)
++.|.++|. +-.+++ +++++.+++||.|..|.+. + ...--.||+|...++|.+|+-.|+|..+.|+.+.
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 344555554 233443 5788899999999988631 1 1123489999999999999999999999999988
Q ss_pred ccccC
Q 003463 221 IHFSI 225 (818)
Q Consensus 221 V~~a~ 225 (818)
..|..
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 87754
No 194
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=89.69 E-value=0.33 Score=53.09 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=60.1
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccC--CeEEE-----EecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYG--EVKEI-----RETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG--~I~~v-----r~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
.-++||+||-+.+|++||.+.....| .+.++ |..+.+||||+|-..+..+.++.++.|-.++|.|..-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 34799999999999999999888766 23333 457889999999999999999999999999999966555443
No 195
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.06 E-value=1.5 Score=47.48 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=57.4
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCc-eEEEEecCCC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKLEPSRPG 312 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr-~L~V~~a~~~ 312 (818)
+.=|-|.++++.- ..-|..+|++||.|.+.... .+..+-.|+|.++-+|.+||. -||+.|+|. -|-|+.+..+
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 4457788998764 35678899999999887654 666799999999999999998 599999984 4556665544
No 196
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.69 E-value=0.32 Score=53.39 Aligned_cols=77 Identities=16% Similarity=0.320 Sum_probs=60.5
Q ss_pred ccceeeecCCCCCCHHHH-H--HHhhccCCeEEEEecCCC--------CceEEEEEcCHHHHHHHHHHcCCCccCCceEE
Q 003463 237 QGTLVVFNLDPSVSNEDL-R--QIFGAYGEVKEIRETPHK--------RHHKFIEFYDVRAAEAALKSLNRSDIAGKRIK 305 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL-~--~lFs~fG~I~~vr~~g~s--------rG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~ 305 (818)
..-+||-+|+..+..+++ + +.|.+||.|..|...... ..-++|.|...++|..||...+|..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 346788889887755444 3 579999999998654321 12389999999999999999999999999999
Q ss_pred EEecCCCc
Q 003463 306 LEPSRPGG 313 (818)
Q Consensus 306 V~~a~~~~ 313 (818)
..+...+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88877654
No 197
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=87.18 E-value=0.67 Score=47.14 Aligned_cols=77 Identities=8% Similarity=0.060 Sum_probs=49.4
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhc-CCCE---EEEE--eC-----CCcccEEEEEEccHHHHHHHHHHhcCcccccc-
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQ-YGDI---RTLY--TA-----CKHRGFVMISYYDIRAARTAMRALQNKPLRRR- 217 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~-fG~I---~~v~--~~-----~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr- 217 (818)
....+|.||+||+.+||+++.+.+.. +++- ..+. .. .....-|||.|.+.+++...+..++|..+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999998876 6665 3332 11 11233599999999999999999999877543
Q ss_pred ----cccccccCC
Q 003463 218 ----KLDIHFSIP 226 (818)
Q Consensus 218 ----~L~V~~a~p 226 (818)
...|.+|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 234555543
No 198
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.70 E-value=3.4 Score=34.89 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=40.3
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcC----CCEEEEEeCCCcccEEEEEEccHHHHHHHHHHh
Q 003463 153 RTLFVRNINSNVEDSELRALFEQY----GDIRTLYTACKHRGFVMISYYDIRAARTAMRAL 209 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~f----G~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~L 209 (818)
.+|+|+++. +++.++|+.+|..| ++.+--.+.. .-|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD---tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD---TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC---CcEEEEECCHHHHHHHHHcC
Confidence 579999985 58889999999999 5432212322 34789999999999999864
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=83.90 E-value=0.66 Score=50.97 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=60.2
Q ss_pred CcEEEEcCCCCCCcHHHHH---HHhhcCCCEEEEEeCCCc------cc--EEEEEEccHHHHHHHHHHhcCccccccccc
Q 003463 152 SRTLFVRNINSNVEDSELR---ALFEQYGDIRTLYTACKH------RG--FVMISYYDIRAARTAMRALQNKPLRRRKLD 220 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr---~lFs~fG~I~~v~~~~ks------rG--~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~ 220 (818)
.+-+||-+|+..+.++++. +.|.+||.|..|.+.+.. .+ -++|+|...++|..||...+|..+.|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3567888999887766654 478899999998743321 11 389999999999999999999999999988
Q ss_pred ccccCCC
Q 003463 221 IHFSIPK 227 (818)
Q Consensus 221 V~~a~pk 227 (818)
..+...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8877654
No 200
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=82.56 E-value=1.9 Score=41.95 Aligned_cols=105 Identities=16% Similarity=0.145 Sum_probs=73.0
Q ss_pred CcHHHHHHHhh----cCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCCCCCCCCCCCC--c
Q 003463 164 VEDSELRALFE----QYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDLN--Q 237 (818)
Q Consensus 164 vTEeeLr~lFs----~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~pk~~~~~~~~~--~ 237 (818)
.+-..|...+. ..|.+.-.. -..++..+.|.+.++++++++ .....+.+..+.++.-.|.......... .
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~---l~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~ 104 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRD---LGDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIP 104 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEE---eCCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccc
Confidence 44555555444 444444332 356899999999999999988 3556677888888766655444332222 2
Q ss_pred cceeeecCCCC-CCHHHHHHHhhccCCeEEEEecCC
Q 003463 238 GTLVVFNLDPS-VSNEDLRQIFGAYGEVKEIRETPH 272 (818)
Q Consensus 238 ~tL~V~NLp~~-vteedL~~lFs~fG~I~~vr~~g~ 272 (818)
-=|.|.|||.. .+++-|+++-+.+|++.+++....
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 24678899987 588889999999999999986533
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.09 E-value=0.94 Score=54.87 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=59.8
Q ss_pred ceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccC--CceEEEEecCCC
Q 003463 239 TLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIA--GKRIKLEPSRPG 312 (818)
Q Consensus 239 tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~--Gr~L~V~~a~~~ 312 (818)
+.++.|.+-..+-.-|..+|++||.|.+++.- +.-..|.|+|...+.|..|+.+|+|+++- |-+.+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheec-ccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 44555556677788899999999999999763 22457999999999999999999999764 788999998764
No 202
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=77.50 E-value=3.3 Score=42.48 Aligned_cols=62 Identities=19% Similarity=0.297 Sum_probs=45.0
Q ss_pred cHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhc--CcccccccccccccCCC
Q 003463 165 EDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQ--NKPLRRRKLDIHFSIPK 227 (818)
Q Consensus 165 TEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Ln--g~~l~gr~L~V~~a~pk 227 (818)
..+.|+++|..|+.+..+... ++-+-..|.|.+.++|.+|...|+ +..+.|..++|.|+.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEc-CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999998887643 344558899999999999999999 89999999999998543
No 203
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=76.97 E-value=8.3 Score=33.31 Aligned_cols=59 Identities=22% Similarity=0.387 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHhhccC-----CeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEec
Q 003463 247 PSVSNEDLRQIFGAYG-----EVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEPS 309 (818)
Q Consensus 247 ~~vteedL~~lFs~fG-----~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~a 309 (818)
..++..+|..++..-+ .|-.|++. ..|+||+-.. +.|.+++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3577888888887764 44566664 4689999875 4889999999999999999999864
No 204
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=76.51 E-value=2.4 Score=45.04 Aligned_cols=58 Identities=21% Similarity=0.288 Sum_probs=50.7
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEE----eCCCcccEEEEEEccHHHHHHHHHHhc
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLY----TACKHRGFVMISYYDIRAARTAMRALQ 210 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~----~~~ksrG~AFV~F~d~e~A~~Al~~Ln 210 (818)
..|||.||..-++.+.|.+-|+.||+|.... ..++..+-++|.|...-.|.+|++.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 6899999999999999999999999976533 466778889999999999999998764
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.59 E-value=6.3 Score=42.91 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=48.8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccc
Q 003463 153 RTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR 217 (818)
Q Consensus 153 rtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr 217 (818)
.=|-|-++|+.- -.-|..+|++||+|.+... .....+-+|.|.+.-+|++||. .+|+.|.|.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~-~~ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVT-PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeec-CCCCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 345566777653 3567889999999998864 4666799999999999999999 488877664
No 206
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=74.76 E-value=20 Score=33.69 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=43.5
Q ss_pred ceeeecCC-CCCCHHHHHHHhhccC-CeEEEEecCC---CCceEEEEEcCHHHHHHHHHHcCCCccCC
Q 003463 239 TLVVFNLD-PSVSNEDLRQIFGAYG-EVKEIRETPH---KRHHKFIEFYDVRAAEAALKSLNRSDIAG 301 (818)
Q Consensus 239 tL~V~NLp-~~vteedL~~lFs~fG-~I~~vr~~g~---srG~aFVeF~d~e~A~~Ai~~LnG~~i~G 301 (818)
+|.|--.| .-++-++|..+.+.+- .|..+|+... ++-.+.++|.+.++|.+-.+..||+.+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44444444 4556667776666663 4555555322 34469999999999999999999998764
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=72.13 E-value=3 Score=37.65 Aligned_cols=67 Identities=15% Similarity=0.253 Sum_probs=44.4
Q ss_pred EEEEEccHHHHHHHHHHhcCc--ccccccccccccCCCCC-----CCCCCCCccceeeecCCCCCCHHHHHHHhh
Q 003463 192 VMISYYDIRAARTAMRALQNK--PLRRRKLDIHFSIPKDN-----PSDKDLNQGTLVVFNLDPSVSNEDLRQIFG 259 (818)
Q Consensus 192 AFV~F~d~e~A~~Al~~Lng~--~l~gr~L~V~~a~pk~~-----~~~~~~~~~tL~V~NLp~~vteedL~~lFs 259 (818)
|.|+|.+.+-|++.++. ... .+.+..+.|....-... ........++|.|+|||..+++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999883 332 34455555543221111 111234567999999999999999987643
No 208
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=69.76 E-value=2.4 Score=48.54 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=63.6
Q ss_pred CCCCCcEEEEcCCCCCCc-HHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccccCC
Q 003463 148 GEHPSRTLFVRNINSNVE-DSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIP 226 (818)
Q Consensus 148 ~e~~srtLfV~NLP~~vT-EeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a~p 226 (818)
.+...+.|-+.-+|.... .++|...|.+||+|..|.+... --.|.|+|.+..+|-+|-. ..+..|.++.|+|.|-.+
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 344567777777777755 4789999999999999986443 4469999999999977776 689999999999999876
Q ss_pred CC
Q 003463 227 KD 228 (818)
Q Consensus 227 k~ 228 (818)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=64.42 E-value=4.5 Score=48.20 Aligned_cols=70 Identities=20% Similarity=0.225 Sum_probs=60.9
Q ss_pred CCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccccc
Q 003463 150 HPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHF 223 (818)
Q Consensus 150 ~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~ 223 (818)
.+.-++||+|+...+..+-++.+...+|-|.+++... |+|..|.....+.+|+..+....++++.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3567999999999999999999999999999875322 999999999999999999999999888776653
No 210
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=64.09 E-value=3.7 Score=50.00 Aligned_cols=74 Identities=22% Similarity=0.341 Sum_probs=59.6
Q ss_pred EEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccc--cccccccccCCCC
Q 003463 154 TLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLR--RRKLDIHFSIPKD 228 (818)
Q Consensus 154 tLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~--gr~L~V~~a~pk~ 228 (818)
+.++-|.+-..+..-|..+|.+||.|.+.+. -+....|.|+|...+.|..|+.+|+|+++. |-+.+|.++++-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wt-lr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWT-LRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhhee-cccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 4455566667888899999999999999874 344567999999999999999999998864 6777888776543
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=60.80 E-value=30 Score=29.63 Aligned_cols=55 Identities=22% Similarity=0.378 Sum_probs=44.1
Q ss_pred CCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEE
Q 003463 248 SVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKL 306 (818)
Q Consensus 248 ~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V 306 (818)
.++-++++..+..|+- .+|+.. ..| =||-|.+.++|+++....+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d--~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDD--RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEec--CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999974 445442 234 489999999999999999999988877664
No 212
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=59.74 E-value=14 Score=37.55 Aligned_cols=74 Identities=22% Similarity=0.304 Sum_probs=50.7
Q ss_pred ceeeecCCCCC-CH----HHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCc-eEEEEecCCC
Q 003463 239 TLVVFNLDPSV-SN----EDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGK-RIKLEPSRPG 312 (818)
Q Consensus 239 tL~V~NLp~~v-te----edL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr-~L~V~~a~~~ 312 (818)
++.+.+++..+ ++ .....+|.+|.+....++. ++.+..-|-|.+.+.|..|...+++..+.|+ .++.-|+.+.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 46666676654 22 2334555555544443332 2344577899999999999999999999998 8888888765
Q ss_pred c
Q 003463 313 G 313 (818)
Q Consensus 313 ~ 313 (818)
.
T Consensus 91 ~ 91 (193)
T KOG4019|consen 91 H 91 (193)
T ss_pred C
Confidence 4
No 213
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.91 E-value=1.1e+02 Score=33.65 Aligned_cols=147 Identities=17% Similarity=0.301 Sum_probs=90.6
Q ss_pred CCCCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCC------------CcccEEEEEEccHHHHHHHHH----HhcC-
Q 003463 149 EHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTAC------------KHRGFVMISYYDIRAARTAMR----ALQN- 211 (818)
Q Consensus 149 e~~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~------------ksrG~AFV~F~d~e~A~~Al~----~Lng- 211 (818)
+-.+|.|...|+..+++--++...|.+||+|++|+... +......+.|-+.+.+..... .|..
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999998422 224578999999887665432 2222
Q ss_pred -cccccccccccccCCCCC------CCCCC----------------CCccceeeecCCCCCCHHHH-HHHh---hccC--
Q 003463 212 -KPLRRRKLDIHFSIPKDN------PSDKD----------------LNQGTLVVFNLDPSVSNEDL-RQIF---GAYG-- 262 (818)
Q Consensus 212 -~~l~gr~L~V~~a~pk~~------~~~~~----------------~~~~tL~V~NLp~~vteedL-~~lF---s~fG-- 262 (818)
..++...|.+.|..-+-. ..+.. ...+.|.|. +...+.++++ .+.+ ..=+
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~ 170 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNK 170 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCc
Confidence 335566677666431100 00000 112456555 3344434443 3322 1113
Q ss_pred --CeEEEEec-------CCCCceEEEEEcCHHHHHHHHHHcCC
Q 003463 263 --EVKEIRET-------PHKRHHKFIEFYDVRAAEAALKSLNR 296 (818)
Q Consensus 263 --~I~~vr~~-------g~srG~aFVeF~d~e~A~~Ai~~LnG 296 (818)
.|++|++. .-++.||.+.|-+..-|.+.+.-|.-
T Consensus 171 RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 171 RYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred eEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 23444431 12467999999999999999987763
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=57.30 E-value=10 Score=45.35 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=60.7
Q ss_pred CccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCCceEEEEe
Q 003463 236 NQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAGKRIKLEP 308 (818)
Q Consensus 236 ~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~Gr~L~V~~ 308 (818)
...++||+|+-..+.++-++.+...+|.|..+.... |+|.+|.....+.+|+..|+-..++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 445899999999999999999999999998886542 999999999999999999999999887776654
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.72 E-value=79 Score=37.64 Aligned_cols=130 Identities=14% Similarity=0.222 Sum_probs=74.2
Q ss_pred CCCCCCcEEEEcCCCCC-CcHHHHHHHhhcC----CCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 147 YGEHPSRTLFVRNINSN-VEDSELRALFEQY----GDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 147 ~~e~~srtLfV~NLP~~-vTEeeLr~lFs~f----G~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
.....+++|-|-|+.++ |.-++|..+|..| |.|.+|.+-.. +|- ...|....+.|.++.+
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS-------eFG--------keRM~eEeV~GP~~el 233 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS-------EFG--------KERMKEEEVHGPPKEL 233 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh-------hhh--------HHHhhhhcccCChhhh
Confidence 34567899999999988 7788999999865 47888865221 111 1223334444544433
Q ss_pred cccCCCCCCCCCCCCccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHHHcCCCccCC
Q 003463 222 HFSIPKDNPSDKDLNQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKSLNRSDIAG 301 (818)
Q Consensus 222 ~~a~pk~~~~~~~~~~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~~LnG~~i~G 301 (818)
- .+........ .+...-++-.+.-+..|+ +.. ...-||.|+|++.+.|.+....++|.++..
T Consensus 234 ~--~~~e~~~~s~----------sD~ee~~~~~~~kLR~Yq-~~r-----LkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 234 F--KPVEEYKESE----------SDDEEEEDVDREKLRQYQ-LNR-----LKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred c--cccccCcccc----------cchhhhhhHHHHHHHHHH-hhh-----heeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 2 1111110000 111111111223333332 111 123479999999999999999999999975
Q ss_pred --ceEEEEec
Q 003463 302 --KRIKLEPS 309 (818)
Q Consensus 302 --r~L~V~~a 309 (818)
..|-+.|-
T Consensus 296 S~~~~DLRFI 305 (650)
T KOG2318|consen 296 SANKLDLRFI 305 (650)
T ss_pred ccceeeeeec
Confidence 55555654
No 216
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.83 E-value=40 Score=38.18 Aligned_cols=55 Identities=24% Similarity=0.326 Sum_probs=42.9
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccCCeEEEEecCCCCceEEEEEcCHHHHHHHHH
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALK 292 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG~I~~vr~~g~srG~aFVeF~d~e~A~~Ai~ 292 (818)
...|-|.++|.....+||...|..|+. +.+++.-....+||--|.+...|..||.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecceeEEeecchHHHHHHhh
Confidence 458899999999999999999999963 2222211123479999999999999997
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=43.44 E-value=67 Score=27.67 Aligned_cols=59 Identities=12% Similarity=0.244 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHhhcCCC-----EEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCccccccccccccc
Q 003463 162 SNVEDSELRALFEQYGD-----IRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFS 224 (818)
Q Consensus 162 ~~vTEeeLr~lFs~fG~-----I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V~~a 224 (818)
..++..+|..++..-+. |-.|.+ ...|+||+-.. +.|+.+++.|++..+.|+++.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I---~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDI---FDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEE---eeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34778888888876643 555555 34588888654 5888999999999999999998753
No 218
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=43.23 E-value=72 Score=27.32 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=41.7
Q ss_pred CCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccccccc
Q 003463 163 NVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDI 221 (818)
Q Consensus 163 ~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr~L~V 221 (818)
.++-++|+..+..|+-.. |.. ...| -||.|.+.++|+++....++..+....|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~-I~~--d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR-IRD--DRTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce-EEe--cCCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999997533 322 2234 489999999999999999998887665543
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=41.91 E-value=79 Score=36.57 Aligned_cols=65 Identities=17% Similarity=0.304 Sum_probs=52.8
Q ss_pred ccceeeecCCCCCCHHHHHHHhhccC-CeEEEEec--CC-CCceEEEEEcCHHHHHHHHHHcCCCccCC
Q 003463 237 QGTLVVFNLDPSVSNEDLRQIFGAYG-EVKEIRET--PH-KRHHKFIEFYDVRAAEAALKSLNRSDIAG 301 (818)
Q Consensus 237 ~~tL~V~NLp~~vteedL~~lFs~fG-~I~~vr~~--g~-srG~aFVeF~d~e~A~~Ai~~LnG~~i~G 301 (818)
...|.|-.+|..+|-.||..+...+- .|..+++. +. .+-.+.|+|.+.++|..-.+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 66899999999999999999998763 45555543 22 23458999999999999999999998864
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=40.43 E-value=17 Score=39.00 Aligned_cols=77 Identities=18% Similarity=0.380 Sum_probs=49.9
Q ss_pred CccceeeecCCCC------------CCHHHHHHHhhccCCeEEEEe----------cCCC-----Cce---------EEE
Q 003463 236 NQGTLVVFNLDPS------------VSNEDLRQIFGAYGEVKEIRE----------TPHK-----RHH---------KFI 279 (818)
Q Consensus 236 ~~~tL~V~NLp~~------------vteedL~~lFs~fG~I~~vr~----------~g~s-----rG~---------aFV 279 (818)
...||++.+||-. -+++.|+..|..||.|..|++ +++. .|| |||
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 3458898888842 367889999999999998853 2222 222 456
Q ss_pred EEcCHHHHHHHHHHcCCCccC----C----ceEEEEecCCC
Q 003463 280 EFYDVRAAEAALKSLNRSDIA----G----KRIKLEPSRPG 312 (818)
Q Consensus 280 eF~d~e~A~~Ai~~LnG~~i~----G----r~L~V~~a~~~ 312 (818)
+|....--..|+.+|.|..+. | -.++|.|.+..
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 666555556666666665432 2 36777776654
No 221
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=38.39 E-value=66 Score=28.87 Aligned_cols=56 Identities=14% Similarity=0.360 Sum_probs=41.2
Q ss_pred ceeeecCCCCCCHHHHHHHhhc-cC-CeEEEEec--CCCCceEEEEEcCHHHHHHHHHHc
Q 003463 239 TLVVFNLDPSVSNEDLRQIFGA-YG-EVKEIRET--PHKRHHKFIEFYDVRAAEAALKSL 294 (818)
Q Consensus 239 tL~V~NLp~~vteedL~~lFs~-fG-~I~~vr~~--g~srG~aFVeF~d~e~A~~Ai~~L 294 (818)
+-|+.-++...+..+|++.++. || +|.+|+.. ....--|||.+..-.+|.+....+
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 4577778999999999999987 55 66677532 222235999999988888776543
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=36.63 E-value=79 Score=34.42 Aligned_cols=48 Identities=8% Similarity=0.166 Sum_probs=36.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhhcCCCE-EEEEeCCCcccEEEEEEccHH
Q 003463 152 SRTLFVRNINSNVEDSELRALFEQYGDI-RTLYTACKHRGFVMISYYDIR 200 (818)
Q Consensus 152 srtLfV~NLP~~vTEeeLr~lFs~fG~I-~~v~~~~ksrG~AFV~F~d~e 200 (818)
.+-|+|+|||.++.-.||+..+.+-|-+ .++.- .-+.|-||+.|-+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCcc
Confidence 3569999999999999999999887643 23322 336788999998754
No 223
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=35.73 E-value=83 Score=27.78 Aligned_cols=55 Identities=15% Similarity=0.356 Sum_probs=40.0
Q ss_pred ceeeecCCCCCCHHHHHHHhhc-cC-CeEEEEec--CCCCceEEEEEcCHHHHHHHHHH
Q 003463 239 TLVVFNLDPSVSNEDLRQIFGA-YG-EVKEIRET--PHKRHHKFIEFYDVRAAEAALKS 293 (818)
Q Consensus 239 tL~V~NLp~~vteedL~~lFs~-fG-~I~~vr~~--g~srG~aFVeF~d~e~A~~Ai~~ 293 (818)
+-|+..++...+..+|++.++. || +|..|+.. +...--|||.+..-..|...-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 4578889999999999999887 55 56666532 22223499999988888776554
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.04 E-value=91 Score=35.52 Aligned_cols=56 Identities=13% Similarity=0.228 Sum_probs=43.5
Q ss_pred CCcEEEEcCCCCCCcHHHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHH
Q 003463 151 PSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMR 207 (818)
Q Consensus 151 ~srtLfV~NLP~~vTEeeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~ 207 (818)
=.+.|=|.++|.....+||...|+.|+. ..+++.--..-.||..|.+...|..|+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDTHALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecceeEEeecchHHHHHHhh
Confidence 3478899999999999999999999974 1111112234579999999999999997
No 225
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=28.45 E-value=1.6e+02 Score=32.16 Aligned_cols=47 Identities=15% Similarity=0.144 Sum_probs=36.2
Q ss_pred cceeeecCCCCCCHHHHHHHhhccCCe-EEEEecCCCCceEEEEEcCHH
Q 003463 238 GTLVVFNLDPSVSNEDLRQIFGAYGEV-KEIRETPHKRHHKFIEFYDVR 285 (818)
Q Consensus 238 ~tL~V~NLp~~vteedL~~lFs~fG~I-~~vr~~g~srG~aFVeF~d~e 285 (818)
.-|+++||+.++...||+..+.+-|-+ .++...+ ..+-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-HFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec-CCcceeEecCCcc
Confidence 469999999999999999999887643 3444433 3567999998753
No 226
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=26.29 E-value=1.9e+02 Score=32.29 Aligned_cols=97 Identities=16% Similarity=0.225 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHhhCCCcccEEEeeecccccceeEE-----EEEecCCcccHHHHHHHhcCCcccCCCCccEEEEEeeec
Q 003463 665 KYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGY-----AFINMLSPLHIIPFYEAFNGKKWEKFNSEKVASLAYARI 739 (818)
Q Consensus 665 ~~~~~~l~~~id~~~~~~ydf~Ylp~d~~~~~n~gy-----afin~~~~~~~~~f~~~f~g~~w~~~~s~k~~~~~~A~i 739 (818)
+++++.|+.+|+-.....|+- ..=|| |..-| --||=++...-.++...|-.+.... .---|..+.+..+
T Consensus 243 RIs~etlk~vl~g~~~~~f~k-CiIID----CRFeYEY~GGHIinaVNi~s~~~l~~~F~hkplTh-p~aLifHCEfSsh 316 (427)
T COG5105 243 RISVETLKQVLEGMYNIDFLK-CIIID----CRFEYEYRGGHIINAVNISSTKKLGLLFRHKPLTH-PRALIFHCEFSSH 316 (427)
T ss_pred hcCHHHHHHHHhchhhhhhhc-eeEEe----ecceeeecCceeeeeeecchHHHHHHHHHhccccC-ceeEEEEeecccc
Confidence 568999999999776655542 22233 33334 3355555555556666666654321 1123444455555
Q ss_pred ccHHHHHHHhccCcccCCCCCccceEEcCC
Q 003463 740 QGRAALVAHFQNSSLMNEDKRCRPILFHSE 769 (818)
Q Consensus 740 Qg~~~l~~~~~~s~~~~~~~~~~p~~f~~~ 769 (818)
.|. .|-+||||.--|.....| |+||+++
T Consensus 317 RaP-~LA~HlRN~DR~~N~dhY-P~L~yPe 344 (427)
T COG5105 317 RAP-RLAQHLRNMDRMKNPDHY-PLLTYPE 344 (427)
T ss_pred cch-hHHHHHhhhhhhcCcccC-cccccce
Confidence 565 489999998866554444 7777765
No 227
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=26.07 E-value=23 Score=38.13 Aligned_cols=62 Identities=27% Similarity=0.495 Sum_probs=43.1
Q ss_pred cEEEEcCCCCC------------CcHHHHHHHhhcCCCEEEEEe----------CCCc-----ccE---------EEEEE
Q 003463 153 RTLFVRNINSN------------VEDSELRALFEQYGDIRTLYT----------ACKH-----RGF---------VMISY 196 (818)
Q Consensus 153 rtLfV~NLP~~------------vTEeeLr~lFs~fG~I~~v~~----------~~ks-----rG~---------AFV~F 196 (818)
.||++.+||-. -+++-|+..|+.||.|+.|.+ +++. .|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57888888843 356789999999999998862 3332 333 44666
Q ss_pred ccHHHHHHHHHHhcCccc
Q 003463 197 YDIRAARTAMRALQNKPL 214 (818)
Q Consensus 197 ~d~e~A~~Al~~Lng~~l 214 (818)
....--..||..|.|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 666666677777777654
No 228
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=25.57 E-value=1.6e+02 Score=36.69 Aligned_cols=31 Identities=29% Similarity=0.442 Sum_probs=25.2
Q ss_pred CCCCcEEEEcCCCCC-CcHHHHHHHhhcCCCE
Q 003463 149 EHPSRTLFVRNINSN-VEDSELRALFEQYGDI 179 (818)
Q Consensus 149 e~~srtLfV~NLP~~-vTEeeLr~lFs~fG~I 179 (818)
.-.+|||+|..||.+ .++++|.++|.+.+..
T Consensus 205 ~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~ 236 (827)
T COG5594 205 NLSSRTVLISGLPSELRSDEELKELFDKLKVG 236 (827)
T ss_pred CCCCceEEeecCChhhcCchhHHHHHhhcCee
Confidence 347899999999988 4567899999987543
No 229
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=21.58 E-value=55 Score=33.50 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=51.9
Q ss_pred cEEEEcCCCCCCcH-----HHHHHHhhcCCCEEEEEeCCCcccEEEEEEccHHHHHHHHHHhcCcccccc-cccccccCC
Q 003463 153 RTLFVRNINSNVED-----SELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRR-KLDIHFSIP 226 (818)
Q Consensus 153 rtLfV~NLP~~vTE-----eeLr~lFs~fG~I~~v~~~~ksrG~AFV~F~d~e~A~~Al~~Lng~~l~gr-~L~V~~a~p 226 (818)
.++++.+|+..+-. .....+|.+|-+...... -++.+..-|.|.+.+.|..|...+++..+.|+ .++..++.+
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~-lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL-LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH-HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 46777777765432 223456666555433321 34667788999999999999999999999988 777777765
Q ss_pred C
Q 003463 227 K 227 (818)
Q Consensus 227 k 227 (818)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 4
Done!